Query 022176
Match_columns 301
No_of_seqs 204 out of 1425
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 1.1E-47 3.7E-52 341.9 26.5 242 46-293 2-252 (254)
2 3re1_A Uroporphyrinogen-III sy 100.0 4.9E-48 1.7E-52 347.1 19.4 246 45-296 9-263 (269)
3 3d8t_A Uroporphyrinogen-III sy 100.0 5E-47 1.7E-51 343.4 23.1 251 26-297 17-283 (286)
4 1jr2_A Uroporphyrinogen-III sy 100.0 2.7E-46 9.2E-51 338.6 24.4 251 42-300 13-285 (286)
5 3mw8_A Uroporphyrinogen-III sy 100.0 7.9E-46 2.7E-50 327.2 24.1 233 50-292 1-239 (240)
6 1wcw_A Uroporphyrinogen III sy 100.0 2.2E-45 7.7E-50 328.0 24.6 240 45-297 3-258 (261)
7 3p9z_A Uroporphyrinogen III co 100.0 1.3E-37 4.5E-42 273.0 18.1 202 75-294 17-224 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 3.2E-16 1.1E-20 136.7 11.9 117 48-174 108-224 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.7 2.6E-16 9.1E-21 141.7 11.2 123 47-175 154-280 (286)
10 3re1_A Uroporphyrinogen-III sy 99.6 3.8E-16 1.3E-20 139.5 9.4 122 47-175 138-262 (269)
11 4es6_A Uroporphyrinogen-III sy 99.6 1.1E-15 3.6E-20 135.3 10.9 120 47-173 130-252 (254)
12 3mw8_A Uroporphyrinogen-III sy 99.6 9.2E-16 3.2E-20 134.5 9.7 113 178-292 1-114 (240)
13 1wcw_A Uroporphyrinogen III sy 99.6 8.8E-16 3E-20 136.2 8.1 118 50-174 130-255 (261)
14 3d8t_A Uroporphyrinogen-III sy 99.6 1.7E-15 5.7E-20 136.5 9.9 118 50-174 155-280 (286)
15 3gbv_A Putative LACI-family tr 96.4 0.059 2E-06 46.9 13.6 194 64-274 30-246 (304)
16 3gv0_A Transcriptional regulat 96.3 0.013 4.6E-07 51.0 8.6 206 64-294 31-253 (288)
17 3l49_A ABC sugar (ribose) tran 96.2 0.1 3.4E-06 45.2 13.5 207 63-292 25-256 (291)
18 2q5c_A NTRC family transcripti 96.1 0.21 7E-06 41.6 14.4 131 127-295 50-181 (196)
19 3egc_A Putative ribose operon 96.0 0.034 1.2E-06 48.4 9.7 182 63-264 28-225 (291)
20 3g1w_A Sugar ABC transporter; 95.9 0.14 4.7E-06 44.7 13.2 202 50-270 4-232 (305)
21 3h75_A Periplasmic sugar-bindi 95.9 0.21 7.3E-06 44.6 14.8 201 64-277 25-259 (350)
22 3qk7_A Transcriptional regulat 95.7 0.043 1.5E-06 47.9 9.2 181 64-263 31-225 (294)
23 3g85_A Transcriptional regulat 95.6 0.074 2.5E-06 46.0 10.0 176 63-261 32-224 (289)
24 2rir_A Dipicolinate synthase, 95.5 0.027 9.3E-07 50.1 7.1 178 46-238 3-225 (300)
25 3k4h_A Putative transcriptiona 95.4 0.055 1.9E-06 46.9 8.6 179 64-264 34-231 (292)
26 3d8u_A PURR transcriptional re 95.2 0.06 2.1E-06 46.2 8.1 176 64-263 24-219 (275)
27 3tb6_A Arabinose metabolism tr 95.2 0.14 4.9E-06 44.2 10.5 182 63-264 35-240 (298)
28 2pju_A Propionate catabolism o 95.0 1.4 4.8E-05 37.4 17.2 129 128-295 63-192 (225)
29 3rot_A ABC sugar transporter, 95.0 0.1 3.5E-06 45.5 9.2 196 51-265 4-229 (297)
30 2fep_A Catabolite control prot 95.0 0.16 5.4E-06 44.1 10.3 176 64-263 37-233 (289)
31 3kke_A LACI family transcripti 95.0 0.2 6.8E-06 43.8 11.0 177 63-264 35-236 (303)
32 3o74_A Fructose transport syst 94.7 0.1 3.5E-06 44.5 8.2 176 63-263 22-217 (272)
33 3gyb_A Transcriptional regulat 94.4 0.1 3.5E-06 44.9 7.6 175 64-264 26-215 (280)
34 2yxb_A Coenzyme B12-dependent 94.4 0.72 2.5E-05 37.0 12.2 114 177-297 17-145 (161)
35 3dbi_A Sugar-binding transcrip 94.3 0.17 5.9E-06 45.0 9.0 176 64-263 84-280 (338)
36 3d4o_A Dipicolinate synthase s 94.3 0.25 8.5E-06 43.6 9.9 207 48-275 3-262 (293)
37 3k9c_A Transcriptional regulat 94.2 0.32 1.1E-05 42.1 10.4 176 64-263 32-223 (289)
38 3c3k_A Alanine racemase; struc 94.2 0.83 2.8E-05 39.3 13.1 174 64-262 29-221 (285)
39 2vk2_A YTFQ, ABC transporter p 94.1 0.93 3.2E-05 39.4 13.4 213 65-296 24-264 (306)
40 3e3m_A Transcriptional regulat 94.1 0.65 2.2E-05 41.5 12.6 176 64-263 91-288 (355)
41 3jy6_A Transcriptional regulat 94.1 0.36 1.2E-05 41.4 10.4 176 64-263 28-219 (276)
42 3bbl_A Regulatory protein of L 94.1 0.35 1.2E-05 41.8 10.3 179 64-264 29-227 (287)
43 2rgy_A Transcriptional regulat 94.0 0.26 8.9E-06 42.7 9.4 176 64-263 29-227 (290)
44 3brq_A HTH-type transcriptiona 93.9 0.34 1.2E-05 41.7 10.0 177 64-263 42-238 (296)
45 3huu_A Transcription regulator 93.8 0.18 6.1E-06 44.1 8.0 178 64-264 48-241 (305)
46 3hcw_A Maltose operon transcri 93.8 0.38 1.3E-05 41.8 10.1 177 63-264 32-231 (295)
47 1dbq_A Purine repressor; trans 93.8 0.16 5.5E-06 43.8 7.6 178 64-263 28-225 (289)
48 2fvy_A D-galactose-binding per 93.8 1.9 6.4E-05 37.2 14.6 181 64-262 23-237 (309)
49 3e61_A Putative transcriptiona 93.5 1.1 3.9E-05 38.0 12.6 174 63-262 28-214 (277)
50 3jvd_A Transcriptional regulat 93.4 0.19 6.6E-06 44.8 7.5 168 64-264 85-270 (333)
51 3ksm_A ABC-type sugar transpor 93.3 0.43 1.5E-05 40.6 9.4 180 63-263 20-223 (276)
52 2o20_A Catabolite control prot 93.2 0.5 1.7E-05 41.8 10.0 175 64-262 84-276 (332)
53 3fwz_A Inner membrane protein 92.8 0.75 2.6E-05 35.5 9.3 61 227-288 70-134 (140)
54 3l6u_A ABC-type sugar transpor 92.8 1.4 4.6E-05 37.8 12.0 179 63-263 28-230 (293)
55 1ccw_A Protein (glutamate muta 92.7 1.3 4.3E-05 34.5 10.4 110 50-172 3-131 (137)
56 3clk_A Transcription regulator 92.6 2.2 7.5E-05 36.6 13.1 178 64-264 29-224 (290)
57 2hsg_A Glucose-resistance amyl 92.5 0.38 1.3E-05 42.5 8.2 177 64-263 81-277 (332)
58 3kjx_A Transcriptional regulat 92.3 0.13 4.3E-06 46.1 4.7 175 64-262 89-284 (344)
59 3cs3_A Sugar-binding transcrip 92.3 0.75 2.6E-05 39.3 9.6 170 64-264 29-216 (277)
60 2dri_A D-ribose-binding protei 92.1 0.87 3E-05 38.8 9.7 176 64-262 22-216 (271)
61 2yxb_A Coenzyme B12-dependent 92.0 1.1 3.8E-05 35.9 9.6 101 49-161 17-130 (161)
62 1mio_B Nitrogenase molybdenum 91.9 6.4 0.00022 36.9 16.2 199 61-276 183-407 (458)
63 3hs3_A Ribose operon repressor 91.9 0.18 6.3E-06 43.4 5.1 170 63-263 30-216 (277)
64 3c85_A Putative glutathione-re 91.7 1.3 4.5E-05 35.5 9.9 118 178-295 39-175 (183)
65 3k5p_A D-3-phosphoglycerate de 91.6 3.1 0.00011 38.7 13.3 172 46-239 11-219 (416)
66 2h0a_A TTHA0807, transcription 91.4 0.99 3.4E-05 38.3 9.2 178 64-264 20-219 (276)
67 3lft_A Uncharacterized protein 90.8 3.7 0.00013 35.4 12.6 185 64-263 22-222 (295)
68 2ioy_A Periplasmic sugar-bindi 90.8 1.9 6.5E-05 36.9 10.6 176 64-262 22-217 (283)
69 1ccw_A Protein (glutamate muta 90.8 1.3 4.3E-05 34.5 8.5 100 190-296 20-135 (137)
70 1qpz_A PURA, protein (purine n 90.7 1.2 4.1E-05 39.4 9.5 178 64-263 79-276 (340)
71 2h3h_A Sugar ABC transporter, 90.7 0.77 2.6E-05 40.1 8.1 178 65-264 22-219 (313)
72 3m9w_A D-xylose-binding peripl 90.6 1.6 5.6E-05 37.8 10.2 176 63-262 22-223 (313)
73 3miz_A Putative transcriptiona 90.6 0.2 6.8E-06 43.6 4.0 180 64-263 35-235 (301)
74 3llv_A Exopolyphosphatase-rela 90.4 2.1 7.4E-05 32.6 9.6 68 227-298 69-138 (141)
75 2qh8_A Uncharacterized protein 90.3 6 0.0002 34.2 13.5 185 64-263 28-229 (302)
76 2g1u_A Hypothetical protein TM 90.1 1.1 3.8E-05 35.1 7.8 113 177-291 18-149 (155)
77 2x7x_A Sensor protein; transfe 90.0 3.6 0.00012 36.0 11.9 174 66-262 28-223 (325)
78 3llv_A Exopolyphosphatase-rela 89.8 3.8 0.00013 31.1 10.6 116 49-172 5-136 (141)
79 2hmt_A YUAA protein; RCK, KTN, 89.8 1.4 4.8E-05 33.3 8.0 114 48-171 4-136 (144)
80 4fe7_A Xylose operon regulator 89.7 1 3.5E-05 41.3 8.3 164 65-250 46-225 (412)
81 2hmt_A YUAA protein; RCK, KTN, 89.7 1.9 6.4E-05 32.6 8.7 66 226-291 68-136 (144)
82 1lss_A TRK system potassium up 89.6 3.5 0.00012 30.9 10.2 56 226-281 67-124 (140)
83 4dik_A Flavoprotein; TM0755, e 89.6 1.9 6.5E-05 39.9 10.0 84 190-275 283-382 (410)
84 1lss_A TRK system potassium up 89.5 5 0.00017 30.0 11.0 115 50-172 4-135 (140)
85 2iks_A DNA-binding transcripti 89.5 2.5 8.5E-05 36.3 10.3 176 64-264 41-236 (293)
86 4gx0_A TRKA domain protein; me 89.3 6.6 0.00023 37.6 14.1 114 49-172 126-257 (565)
87 2g1u_A Hypothetical protein TM 89.3 1.5 5.2E-05 34.3 8.0 119 45-173 14-151 (155)
88 3fwz_A Inner membrane protein 89.1 3.1 0.00011 31.8 9.6 113 51-172 8-138 (140)
89 1byk_A Protein (trehalose oper 89.0 1.6 5.6E-05 36.6 8.5 172 64-265 23-209 (255)
90 2rjo_A Twin-arginine transloca 88.9 1.3 4.3E-05 39.1 8.0 181 64-263 26-233 (332)
91 2qu7_A Putative transcriptiona 88.8 0.28 9.7E-06 42.3 3.6 177 65-264 29-226 (288)
92 1id1_A Putative potassium chan 88.3 3.7 0.00013 31.8 9.6 53 226-279 69-125 (153)
93 3bil_A Probable LACI-family tr 88.1 4.2 0.00014 36.1 11.0 175 64-263 87-279 (348)
94 1id1_A Putative potassium chan 88.0 4.9 0.00017 31.1 10.2 114 50-172 3-138 (153)
95 3c85_A Putative glutathione-re 87.0 4.4 0.00015 32.3 9.6 117 47-172 36-172 (183)
96 1gud_A ALBP, D-allose-binding 86.6 14 0.00047 31.4 13.4 184 64-264 22-230 (288)
97 3h5o_A Transcriptional regulat 86.6 0.99 3.4E-05 39.9 5.9 175 64-262 83-276 (339)
98 2fn9_A Ribose ABC transporter, 86.5 3.8 0.00013 34.9 9.5 176 64-262 23-225 (290)
99 2pln_A HP1043, response regula 86.3 8.3 0.00028 28.4 11.4 110 177-299 17-135 (137)
100 3d02_A Putative LACI-type tran 86.0 3.6 0.00012 35.3 9.1 191 64-274 25-238 (303)
101 3aek_A Light-independent proto 85.8 9.2 0.00031 35.5 12.3 190 63-275 198-398 (437)
102 3h5t_A Transcriptional regulat 85.3 1.2 4E-05 40.0 5.7 171 100-293 126-330 (366)
103 2hqb_A Transcriptional activat 85.1 7.7 0.00026 33.6 10.9 167 64-249 28-202 (296)
104 5nul_A Flavodoxin; electron tr 84.4 7.7 0.00026 29.3 9.4 94 191-296 17-133 (138)
105 2wm8_A MDP-1, magnesium-depend 84.2 9.9 0.00034 30.2 10.5 105 58-173 69-178 (187)
106 2wm8_A MDP-1, magnesium-depend 84.1 5.4 0.00019 31.8 8.8 109 164-298 73-183 (187)
107 1jx6_A LUXP protein; protein-l 83.7 3.9 0.00013 35.8 8.4 186 64-264 65-270 (342)
108 2i2x_B MTAC, methyltransferase 83.3 8.7 0.0003 32.9 10.2 111 49-172 122-242 (258)
109 1y80_A Predicted cobalamin bin 82.4 5.4 0.00018 33.0 8.3 90 50-145 88-188 (210)
110 2xij_A Methylmalonyl-COA mutas 81.3 17 0.00059 36.3 12.6 111 49-172 603-726 (762)
111 1jye_A Lactose operon represso 81.3 4.5 0.00015 35.8 7.9 174 64-262 82-275 (349)
112 2pln_A HP1043, response regula 80.4 15 0.00051 27.0 10.2 113 46-174 14-130 (137)
113 4eyg_A Twin-arginine transloca 80.4 9.3 0.00032 33.5 9.7 148 101-261 71-230 (368)
114 2cuk_A Glycerate dehydrogenase 79.8 25 0.00086 30.9 12.2 165 51-239 1-204 (311)
115 2xij_A Methylmalonyl-COA mutas 79.7 19 0.00064 36.0 12.2 112 178-296 604-730 (762)
116 3rht_A (gatase1)-like protein; 79.7 3 0.0001 36.2 5.8 74 50-136 4-87 (259)
117 3brs_A Periplasmic binding pro 79.4 2.1 7.2E-05 36.5 4.9 182 63-261 27-224 (289)
118 3gt7_A Sensor protein; structu 79.2 18 0.00063 27.3 13.8 111 178-298 7-128 (154)
119 3ctp_A Periplasmic binding pro 79.1 9.5 0.00033 33.2 9.2 172 64-263 81-269 (330)
120 3l4b_C TRKA K+ channel protien 79.1 14 0.0005 30.2 9.9 114 51-172 1-132 (218)
121 1tjy_A Sugar transport protein 79.0 14 0.00046 32.1 10.2 187 64-272 24-234 (316)
122 1j4a_A D-LDH, D-lactate dehydr 78.9 15 0.00051 32.8 10.5 167 51-239 2-210 (333)
123 3l9w_A Glutathione-regulated p 78.8 11 0.00038 34.7 9.9 59 221-280 59-123 (413)
124 3aek_B Light-independent proto 78.7 46 0.0016 31.6 18.3 194 60-276 170-371 (525)
125 5nul_A Flavodoxin; electron tr 78.6 2.3 8E-05 32.3 4.4 61 63-135 17-86 (138)
126 2fqx_A Membrane lipoprotein TM 78.1 22 0.00076 31.0 11.3 165 64-248 28-208 (318)
127 4evq_A Putative ABC transporte 77.4 36 0.0012 29.7 12.8 149 101-261 81-239 (375)
128 3ezx_A MMCP 1, monomethylamine 77.4 8.3 0.00028 32.2 7.8 91 49-145 91-194 (215)
129 3td9_A Branched chain amino ac 77.3 36 0.0012 29.7 13.9 146 101-260 80-236 (366)
130 3gl9_A Response regulator; bet 77.3 18 0.00061 26.1 12.6 107 179-296 3-121 (122)
131 4dad_A Putative pilus assembly 77.2 20 0.00067 26.6 10.3 114 177-300 19-144 (146)
132 2amj_A Modulator of drug activ 77.2 3.6 0.00012 34.0 5.5 65 178-246 12-95 (204)
133 3eod_A Protein HNR; response r 76.9 18 0.00063 26.1 11.1 113 46-173 3-122 (130)
134 3d64_A Adenosylhomocysteinase; 76.5 35 0.0012 32.3 12.7 37 44-80 69-106 (494)
135 4dgs_A Dehydrogenase; structur 76.4 25 0.00087 31.5 11.3 164 49-238 29-232 (340)
136 1qgu_B Protein (nitrogenase mo 76.4 16 0.00056 34.7 10.5 141 61-209 232-391 (519)
137 3hly_A Flavodoxin-like domain; 75.9 26 0.00089 27.3 10.2 92 191-287 19-128 (161)
138 1sc6_A PGDH, D-3-phosphoglycer 75.9 48 0.0016 30.4 13.7 168 50-239 4-208 (404)
139 3hdv_A Response regulator; PSI 75.9 20 0.0007 26.1 9.9 111 178-298 7-128 (136)
140 3pdi_B Nitrogenase MOFE cofact 75.8 51 0.0018 30.7 17.0 202 50-275 169-396 (458)
141 2yq5_A D-isomer specific 2-hyd 75.6 4.4 0.00015 36.6 5.9 170 50-238 1-210 (343)
142 2q9u_A A-type flavoprotein; fl 75.5 46 0.0016 30.0 13.3 90 192-286 276-388 (414)
143 3hdv_A Response regulator; PSI 74.5 22 0.00076 25.8 11.6 113 49-174 6-124 (136)
144 3lkv_A Uncharacterized conserv 74.4 41 0.0014 28.9 12.5 197 50-262 8-228 (302)
145 3f6r_A Flavodoxin; FMN binding 74.3 26 0.00089 26.5 9.6 76 191-275 20-119 (148)
146 3fni_A Putative diflavin flavo 74.2 29 0.00099 27.0 10.6 93 191-287 23-133 (159)
147 1v8b_A Adenosylhomocysteinase; 74.1 26 0.0009 33.0 11.1 36 44-79 40-76 (479)
148 4dik_A Flavoprotein; TM0755, e 74.1 8.6 0.00029 35.5 7.7 82 51-136 266-360 (410)
149 3f2v_A General stress protein 73.8 1.1 3.9E-05 36.9 1.4 50 62-112 19-68 (192)
150 4g2n_A D-isomer specific 2-hyd 73.4 51 0.0017 29.5 13.5 168 48-238 26-237 (345)
151 2fp4_A Succinyl-COA ligase [GD 73.0 48 0.0016 29.0 14.9 243 46-298 9-302 (305)
152 3f2v_A General stress protein 72.5 2.5 8.7E-05 34.8 3.3 59 190-248 19-85 (192)
153 3f6r_A Flavodoxin; FMN binding 72.5 3.8 0.00013 31.5 4.2 63 63-136 20-93 (148)
154 2vzf_A NADH-dependent FMN redu 72.4 1.6 5.4E-05 35.8 2.0 85 51-135 3-109 (197)
155 3rht_A (gatase1)-like protein; 71.6 9.3 0.00032 33.0 6.8 64 179-249 5-78 (259)
156 2iuf_A Catalase; oxidoreductas 71.6 5.2 0.00018 39.5 5.7 118 177-300 528-680 (688)
157 3kp1_A D-ornithine aminomutase 71.3 56 0.0019 32.1 12.6 127 162-298 589-736 (763)
158 3hut_A Putative branched-chain 71.0 33 0.0011 29.7 10.7 146 100-260 70-226 (358)
159 3gt7_A Sensor protein; structu 70.9 31 0.0011 25.9 11.6 111 49-173 6-123 (154)
160 3npg_A Uncharacterized DUF364 70.9 7.2 0.00025 33.5 5.9 142 133-293 83-232 (249)
161 2q62_A ARSH; alpha/beta, flavo 70.7 12 0.00041 31.9 7.3 72 178-249 34-126 (247)
162 3s2u_A UDP-N-acetylglucosamine 70.7 39 0.0013 30.0 11.2 105 179-298 212-325 (365)
163 1req_A Methylmalonyl-COA mutas 70.5 31 0.0011 34.2 11.1 110 49-171 595-717 (727)
164 2fzv_A Putative arsenical resi 70.5 8.2 0.00028 33.7 6.3 72 178-249 58-151 (279)
165 3fni_A Putative diflavin flavo 70.0 7.5 0.00026 30.6 5.5 68 63-136 23-95 (159)
166 2i2x_B MTAC, methyltransferase 69.9 51 0.0017 28.0 11.7 110 177-297 122-244 (258)
167 2aef_A Calcium-gated potassium 69.7 10 0.00035 31.4 6.7 111 50-170 9-136 (234)
168 4fs3_A Enoyl-[acyl-carrier-pro 69.7 17 0.00059 30.7 8.2 74 46-123 2-82 (256)
169 1fs0_G ATP synthase gamma subu 69.7 14 0.00047 31.2 7.4 67 229-295 58-142 (230)
170 3l4b_C TRKA K+ channel protien 69.2 14 0.00048 30.3 7.3 66 226-295 63-131 (218)
171 1sqs_A Conserved hypothetical 69.1 14 0.00049 30.9 7.5 57 192-248 23-106 (242)
172 3lte_A Response regulator; str 69.1 29 0.001 24.9 11.5 112 178-299 6-127 (132)
173 2xdq_B Light-independent proto 68.8 20 0.00068 34.0 9.1 194 61-275 184-393 (511)
174 2fz5_A Flavodoxin; alpha/beta 68.5 5.7 0.0002 29.8 4.3 60 64-135 19-87 (137)
175 3i42_A Response regulator rece 68.0 28 0.00094 24.9 8.1 112 179-300 4-125 (127)
176 3hly_A Flavodoxin-like domain; 68.0 8.6 0.0003 30.2 5.5 67 63-136 19-90 (161)
177 2q1w_A Putative nucleotide sug 68.0 13 0.00045 32.5 7.3 74 36-110 7-97 (333)
178 2aef_A Calcium-gated potassium 67.9 6 0.0002 33.0 4.7 54 226-280 69-126 (234)
179 2xdq_A Light-independent proto 67.6 29 0.00097 32.2 9.8 140 51-208 197-347 (460)
180 3kht_A Response regulator; PSI 67.6 34 0.0012 25.1 12.5 113 178-298 5-129 (144)
181 1rtt_A Conserved hypothetical 67.5 11 0.00039 30.2 6.3 84 51-135 7-115 (193)
182 2vzf_A NADH-dependent FMN redu 67.4 5.7 0.0002 32.3 4.4 58 192-249 24-97 (197)
183 4e5n_A Thermostable phosphite 66.7 28 0.00094 31.0 9.1 165 50-238 2-210 (330)
184 1pea_A Amidase operon; gene re 66.5 33 0.0011 30.3 9.8 147 101-260 74-232 (385)
185 3grc_A Sensor protein, kinase; 66.3 35 0.0012 24.8 13.1 112 178-299 6-129 (140)
186 4gx0_A TRKA domain protein; me 66.2 23 0.00078 33.7 9.1 101 179-280 128-245 (565)
187 2gk3_A Putative cytoplasmic pr 66.2 1.9 6.4E-05 37.2 1.2 47 58-110 38-85 (256)
188 2qip_A Protein of unknown func 66.1 3.7 0.00013 32.7 2.9 82 61-145 62-152 (165)
189 3oet_A Erythronate-4-phosphate 65.7 7 0.00024 35.8 5.0 162 50-239 3-181 (381)
190 3lte_A Response regulator; str 65.0 36 0.0012 24.4 10.0 112 49-174 5-122 (132)
191 2q62_A ARSH; alpha/beta, flavo 64.9 8.6 0.0003 32.8 5.2 84 28-112 10-108 (247)
192 1xrs_B D-lysine 5,6-aminomutas 64.9 67 0.0023 27.6 13.2 130 162-298 104-259 (262)
193 3l9w_A Glutathione-regulated p 64.7 43 0.0015 30.7 10.3 102 50-160 4-123 (413)
194 3eaf_A ABC transporter, substr 64.2 53 0.0018 29.0 10.7 146 100-260 74-231 (391)
195 1u7z_A Coenzyme A biosynthesis 63.8 15 0.00051 31.0 6.4 34 46-79 4-54 (226)
196 1req_A Methylmalonyl-COA mutas 63.5 49 0.0017 32.9 10.8 112 178-296 596-722 (727)
197 4a26_A Putative C-1-tetrahydro 63.3 11 0.00039 33.2 5.7 149 65-238 58-220 (300)
198 1xdw_A NAD+-dependent (R)-2-hy 62.8 54 0.0019 29.0 10.3 167 51-238 1-208 (331)
199 3m3p_A Glutamine amido transfe 62.8 7 0.00024 33.5 4.2 53 50-111 3-57 (250)
200 3evt_A Phosphoglycerate dehydr 62.7 82 0.0028 27.8 12.0 161 50-238 1-201 (324)
201 1oi7_A Succinyl-COA synthetase 62.6 76 0.0026 27.4 14.5 179 50-237 7-208 (288)
202 3otg_A CALG1; calicheamicin, T 62.6 82 0.0028 27.8 19.8 67 226-298 306-377 (412)
203 3cg0_A Response regulator rece 62.4 39 0.0013 24.5 8.1 112 46-172 5-123 (140)
204 4gi5_A Quinone reductase; prot 62.4 4.9 0.00017 35.2 3.2 38 48-85 20-65 (280)
205 2h1q_A Hypothetical protein; Z 62.1 15 0.00051 31.9 6.2 110 177-293 140-253 (270)
206 1rtt_A Conserved hypothetical 62.1 15 0.00053 29.4 6.1 70 179-249 7-100 (193)
207 2ekl_A D-3-phosphoglycerate de 62.0 81 0.0028 27.5 12.1 164 49-238 4-206 (313)
208 3l5o_A Uncharacterized protein 61.8 22 0.00074 30.9 7.2 109 177-292 140-252 (270)
209 1e5d_A Rubredoxin\:oxygen oxid 61.8 61 0.0021 28.9 10.7 104 178-286 252-381 (402)
210 3uce_A Dehydrogenase; rossmann 61.7 5.2 0.00018 33.0 3.1 63 47-109 3-66 (223)
211 3h1g_A Chemotaxis protein CHEY 61.6 42 0.0014 24.1 10.2 111 48-173 3-123 (129)
212 4fgs_A Probable dehydrogenase 61.4 27 0.00093 30.1 7.8 86 25-123 10-99 (273)
213 3lkb_A Probable branched-chain 61.3 28 0.00094 30.8 8.2 148 101-260 74-230 (392)
214 3h5i_A Response regulator/sens 61.3 35 0.0012 25.0 7.7 110 48-172 3-119 (140)
215 3gbv_A Putative LACI-family tr 61.2 38 0.0013 28.5 8.8 75 63-138 159-235 (304)
216 3tem_A Ribosyldihydronicotinam 61.1 4.6 0.00016 34.1 2.7 70 179-248 2-119 (228)
217 3kto_A Response regulator rece 61.1 44 0.0015 24.2 10.3 110 178-298 6-127 (136)
218 1usg_A Leucine-specific bindin 61.0 75 0.0026 27.1 10.9 145 101-259 68-224 (346)
219 2g76_A 3-PGDH, D-3-phosphoglyc 60.7 91 0.0031 27.6 13.3 165 49-239 25-230 (335)
220 2hpv_A FMN-dependent NADH-azor 60.6 9.6 0.00033 31.0 4.6 58 191-248 24-121 (208)
221 3k1y_A Oxidoreductase; structu 60.6 13 0.00045 30.3 5.3 71 179-249 12-113 (191)
222 3ipc_A ABC transporter, substr 60.2 42 0.0014 29.0 9.1 146 101-260 68-225 (356)
223 2qr3_A Two-component system re 60.1 46 0.0016 24.0 11.9 108 179-298 4-127 (140)
224 3kp1_A D-ornithine aminomutase 60.1 26 0.0009 34.4 7.9 111 50-172 602-730 (763)
225 3k5i_A Phosphoribosyl-aminoimi 60.0 33 0.0011 31.1 8.6 34 177-211 23-56 (403)
226 1dxy_A D-2-hydroxyisocaproate 59.9 47 0.0016 29.4 9.4 167 51-239 1-208 (333)
227 3l7n_A Putative uncharacterize 59.5 16 0.00056 30.6 5.9 83 51-146 1-101 (236)
228 2yv2_A Succinyl-COA synthetase 59.2 89 0.0031 27.1 14.2 175 52-237 15-215 (297)
229 3fro_A GLGA glycogen synthase; 59.0 69 0.0023 28.3 10.5 175 101-296 187-394 (439)
230 3o74_A Fructose transport syst 59.0 46 0.0016 27.4 8.8 62 138-207 24-88 (272)
231 3pp8_A Glyoxylate/hydroxypyruv 58.8 94 0.0032 27.3 12.8 59 177-238 138-203 (315)
232 3ia7_A CALG4; glycosysltransfe 58.7 93 0.0032 27.2 21.6 67 226-298 295-367 (402)
233 1xg5_A ARPG836; short chain de 58.5 79 0.0027 26.5 10.4 33 47-79 29-62 (279)
234 3rsc_A CALG2; TDP, enediyne, s 58.2 99 0.0034 27.3 19.0 65 227-297 312-381 (415)
235 2hna_A Protein MIOC, flavodoxi 58.1 14 0.00049 28.2 5.0 61 63-136 20-90 (147)
236 1cyd_A Carbonyl reductase; sho 57.6 40 0.0014 27.5 8.1 34 46-79 3-37 (244)
237 3gvp_A Adenosylhomocysteinase 57.5 1.2E+02 0.0041 28.1 11.9 36 44-79 48-84 (435)
238 1y80_A Predicted cobalamin bin 57.4 21 0.00073 29.2 6.2 107 178-294 88-208 (210)
239 3tem_A Ribosyldihydronicotinam 57.2 6 0.0002 33.3 2.7 35 50-84 1-43 (228)
240 2qh8_A Uncharacterized protein 57.1 89 0.0031 26.4 10.8 17 227-243 68-84 (302)
241 3k1y_A Oxidoreductase; structu 56.6 7.6 0.00026 31.8 3.2 87 49-135 10-125 (191)
242 3lop_A Substrate binding perip 56.4 31 0.001 30.2 7.5 145 101-260 72-228 (364)
243 1q7r_A Predicted amidotransfer 56.3 22 0.00074 29.4 6.1 50 48-112 21-70 (219)
244 3h9u_A Adenosylhomocysteinase; 56.2 1.3E+02 0.0043 27.9 14.6 36 44-79 37-73 (436)
245 2fzv_A Putative arsenical resi 55.9 37 0.0013 29.5 7.7 73 49-122 57-150 (279)
246 3hzh_A Chemotaxis response reg 55.9 61 0.0021 24.2 8.9 108 179-296 37-156 (157)
247 4gi5_A Quinone reductase; prot 55.9 8.3 0.00028 33.7 3.5 71 177-247 21-138 (280)
248 2a5l_A Trp repressor binding p 55.9 45 0.0015 26.4 7.9 84 50-134 5-114 (200)
249 2fep_A Catabolite control prot 55.8 90 0.0031 26.1 11.1 62 138-208 38-102 (289)
250 1e5d_A Rubredoxin\:oxygen oxid 55.7 23 0.00078 31.8 6.7 79 50-135 252-343 (402)
251 3q2o_A Phosphoribosylaminoimid 55.6 24 0.00081 31.8 6.8 34 177-210 13-46 (389)
252 3q2o_A Phosphoribosylaminoimid 55.6 1.1E+02 0.0038 27.2 11.7 35 46-80 10-44 (389)
253 3u7q_A Nitrogenase molybdenum- 55.5 1.4E+02 0.0046 28.1 16.1 215 59-295 232-464 (492)
254 1rli_A Trp repressor binding p 55.3 14 0.00049 29.1 4.7 28 221-248 64-98 (184)
255 3i09_A Periplasmic branched-ch 55.3 77 0.0026 27.6 10.1 140 101-251 70-219 (375)
256 3n0w_A ABC branched chain amin 55.2 41 0.0014 29.5 8.2 138 101-251 72-221 (379)
257 1rli_A Trp repressor binding p 54.9 7.4 0.00025 30.9 2.8 70 51-121 4-97 (184)
258 1wwk_A Phosphoglycerate dehydr 54.7 1.1E+02 0.0037 26.7 11.1 137 50-212 3-173 (307)
259 2rdm_A Response regulator rece 54.6 55 0.0019 23.3 9.6 112 178-300 5-126 (132)
260 3hv2_A Response regulator/HD d 54.4 63 0.0022 23.9 10.6 112 46-172 10-128 (153)
261 4id9_A Short-chain dehydrogena 54.3 67 0.0023 27.8 9.4 64 44-110 13-85 (347)
262 3jtm_A Formate dehydrogenase, 54.2 67 0.0023 28.8 9.4 154 63-238 30-230 (351)
263 3l5o_A Uncharacterized protein 54.1 33 0.0011 29.7 7.0 115 46-173 137-253 (270)
264 4b79_A PA4098, probable short- 54.0 45 0.0015 28.2 7.8 32 48-79 9-41 (242)
265 3hcw_A Maltose operon transcri 53.8 98 0.0034 25.9 12.7 61 138-207 34-97 (295)
266 3hdg_A Uncharacterized protein 53.6 60 0.002 23.4 10.4 107 49-173 6-121 (137)
267 3nrc_A Enoyl-[acyl-carrier-pro 53.6 45 0.0015 28.2 7.9 74 46-124 22-100 (280)
268 2zay_A Response regulator rece 53.6 63 0.0021 23.6 12.3 111 178-298 8-129 (147)
269 3gl9_A Response regulator; bet 53.6 57 0.002 23.2 10.7 109 51-173 3-118 (122)
270 3rd5_A Mypaa.01249.C; ssgcid, 53.4 58 0.002 27.7 8.7 34 46-79 12-46 (291)
271 2qxy_A Response regulator; reg 53.4 62 0.0021 23.5 13.9 110 178-298 4-122 (142)
272 3f9i_A 3-oxoacyl-[acyl-carrier 53.4 53 0.0018 27.0 8.2 34 46-79 10-44 (249)
273 2rjn_A Response regulator rece 53.3 66 0.0023 23.8 13.0 113 47-173 4-122 (154)
274 2gk4_A Conserved hypothetical 53.2 39 0.0013 28.5 7.2 31 49-79 2-49 (232)
275 3oig_A Enoyl-[acyl-carrier-pro 52.8 53 0.0018 27.4 8.2 74 46-123 3-83 (266)
276 3oec_A Carveol dehydrogenase ( 52.7 36 0.0012 29.6 7.3 77 46-123 42-131 (317)
277 3t4x_A Oxidoreductase, short c 52.7 64 0.0022 27.0 8.7 34 46-79 6-40 (267)
278 2j48_A Two-component sensor ki 52.6 53 0.0018 22.5 8.0 108 50-174 1-115 (119)
279 3lua_A Response regulator rece 52.6 63 0.0022 23.4 12.5 111 178-298 4-128 (140)
280 1fs0_G ATP synthase gamma subu 52.5 17 0.00058 30.6 4.8 49 102-156 57-116 (230)
281 3rpe_A MDAB, modulator of drug 52.5 9.2 0.00032 32.1 3.1 58 49-112 24-93 (218)
282 1p90_A NAFY protein, hypotheti 52.3 17 0.00057 28.3 4.4 39 259-297 75-113 (145)
283 3r6w_A FMN-dependent NADH-azor 52.2 13 0.00044 30.5 4.0 56 192-247 24-113 (212)
284 1p77_A Shikimate 5-dehydrogena 52.1 53 0.0018 28.0 8.1 121 66-212 21-150 (272)
285 3sg0_A Extracellular ligand-bi 51.8 38 0.0013 29.5 7.4 144 101-259 88-245 (386)
286 1xrs_B D-lysine 5,6-aminomutas 51.7 53 0.0018 28.2 7.9 91 69-172 152-253 (262)
287 1t0i_A YLR011WP; FMN binding p 51.7 20 0.00069 28.5 5.0 57 192-248 22-111 (191)
288 2dr1_A PH1308 protein, 386AA l 51.5 17 0.00059 31.9 5.0 63 49-112 94-156 (386)
289 2pzm_A Putative nucleotide sug 51.4 37 0.0013 29.4 7.2 68 42-110 12-96 (330)
290 1lnq_A MTHK channels, potassiu 51.3 64 0.0022 28.2 8.8 111 50-170 115-242 (336)
291 3mwd_B ATP-citrate synthase; A 51.1 1.3E+02 0.0045 26.7 12.1 72 177-249 167-247 (334)
292 2ohh_A Type A flavoprotein FPR 51.0 18 0.00062 32.5 5.1 65 64-135 276-350 (404)
293 3egc_A Putative ribose operon 51.0 45 0.0015 28.0 7.5 62 138-208 30-94 (291)
294 4hs4_A Chromate reductase; tri 51.0 15 0.00051 30.1 4.1 84 51-135 7-116 (199)
295 3u7r_A NADPH-dependent FMN red 51.0 21 0.00072 29.0 5.1 84 51-135 3-111 (190)
296 2ag5_A DHRS6, dehydrogenase/re 50.9 58 0.002 26.8 8.0 33 47-79 3-36 (246)
297 3kht_A Response regulator; PSI 50.8 69 0.0024 23.3 10.3 112 49-172 4-123 (144)
298 3sx2_A Putative 3-ketoacyl-(ac 50.6 51 0.0017 27.8 7.7 35 45-79 8-43 (278)
299 3ek2_A Enoyl-(acyl-carrier-pro 50.5 50 0.0017 27.5 7.6 75 46-124 10-89 (271)
300 2hpv_A FMN-dependent NADH-azor 50.4 6.8 0.00023 32.0 1.9 20 63-82 24-45 (208)
301 3ixl_A Amdase, arylmalonate de 50.3 30 0.001 29.2 6.1 70 227-299 65-142 (240)
302 3njr_A Precorrin-6Y methylase; 50.2 79 0.0027 25.3 8.6 101 109-217 85-187 (204)
303 1wdi_A Hypothetical protein TT 49.9 1.2E+02 0.0041 27.1 10.0 74 190-271 190-267 (345)
304 3kke_A LACI family transcripti 49.8 1.2E+02 0.004 25.6 10.6 62 138-208 37-101 (303)
305 3uug_A Multiple sugar-binding 49.6 50 0.0017 28.2 7.7 171 64-251 24-227 (330)
306 3lft_A Uncharacterized protein 49.5 1.1E+02 0.0038 25.7 9.9 17 227-243 61-77 (295)
307 3g85_A Transcriptional regulat 49.5 42 0.0014 28.0 7.1 73 63-135 147-224 (289)
308 3svl_A Protein YIEF; E. coli C 49.4 17 0.00059 29.5 4.3 84 51-135 5-115 (193)
309 2nm0_A Probable 3-oxacyl-(acyl 49.4 51 0.0018 27.5 7.5 39 41-79 12-51 (253)
310 1sqs_A Conserved hypothetical 49.4 9.5 0.00033 32.0 2.8 48 65-112 24-89 (242)
311 2hsg_A Glucose-resistance amyl 49.3 1.2E+02 0.0042 25.8 13.3 62 138-208 82-146 (332)
312 3orq_A N5-carboxyaminoimidazol 49.0 34 0.0012 30.7 6.6 34 177-210 11-44 (377)
313 3m6m_D Sensory/regulatory prot 49.0 76 0.0026 23.3 11.2 115 46-174 10-133 (143)
314 3e48_A Putative nucleoside-dip 48.8 1.2E+02 0.004 25.3 10.2 72 51-125 1-97 (289)
315 3ruf_A WBGU; rossmann fold, UD 48.7 1.3E+02 0.0045 25.9 10.6 63 46-111 21-109 (351)
316 2nv0_A Glutamine amidotransfer 48.6 26 0.0009 28.1 5.3 78 51-144 2-87 (196)
317 3fvw_A Putative NAD(P)H-depend 48.5 16 0.00053 29.6 3.9 61 51-112 3-77 (192)
318 3ddh_A Putative haloacid dehal 48.4 31 0.0011 27.3 5.8 90 59-160 107-203 (234)
319 3d3w_A L-xylulose reductase; u 48.3 79 0.0027 25.7 8.5 34 46-79 3-37 (244)
320 3r6w_A FMN-dependent NADH-azor 48.2 12 0.00041 30.6 3.2 21 64-84 24-46 (212)
321 3to5_A CHEY homolog; alpha(5)b 47.8 87 0.003 23.5 10.7 111 176-297 10-133 (134)
322 4evq_A Putative ABC transporte 47.6 70 0.0024 27.7 8.4 92 49-143 150-247 (375)
323 3t6k_A Response regulator rece 47.5 78 0.0027 22.9 13.1 110 178-298 4-125 (136)
324 2gcg_A Glyoxylate reductase/hy 47.5 1.4E+02 0.005 26.0 10.6 140 47-205 5-182 (330)
325 3k31_A Enoyl-(acyl-carrier-pro 47.4 66 0.0022 27.5 8.1 74 46-123 26-104 (296)
326 2xok_G ATP synthase subunit ga 47.4 78 0.0027 27.9 8.5 65 228-294 104-183 (311)
327 2f9f_A First mannosyl transfer 47.4 94 0.0032 23.9 9.6 122 164-299 38-164 (177)
328 1f0k_A MURG, UDP-N-acetylgluco 47.3 28 0.00097 30.2 5.7 60 227-293 253-321 (364)
329 1t0i_A YLR011WP; FMN binding p 47.2 17 0.00057 29.0 3.9 19 94-112 76-94 (191)
330 2q9u_A A-type flavoprotein; fl 47.1 28 0.00097 31.4 5.8 79 50-135 256-348 (414)
331 2ohh_A Type A flavoprotein FPR 46.9 31 0.001 30.9 6.0 80 191-275 275-373 (404)
332 3cz5_A Two-component response 46.9 84 0.0029 23.1 9.6 114 48-175 3-123 (153)
333 1lnq_A MTHK channels, potassiu 46.8 33 0.0011 30.1 6.1 54 226-280 175-232 (336)
334 3cg0_A Response regulator rece 46.7 78 0.0027 22.7 10.1 109 177-297 8-128 (140)
335 2ywj_A Glutamine amidotransfer 46.2 30 0.001 27.5 5.2 70 51-138 1-78 (186)
336 3ej6_A Catalase-3; heme, hydro 46.1 93 0.0032 30.6 9.5 114 177-300 536-676 (688)
337 1kjq_A GART 2, phosphoribosylg 45.6 69 0.0023 28.4 8.1 32 178-209 11-42 (391)
338 3c48_A Predicted glycosyltrans 45.6 1.6E+02 0.0055 26.0 10.8 67 226-298 323-392 (438)
339 4dim_A Phosphoribosylglycinami 45.5 51 0.0017 29.5 7.3 77 48-125 5-95 (403)
340 3f6p_A Transcriptional regulat 45.5 77 0.0026 22.3 13.2 106 179-297 3-119 (120)
341 3h5l_A Putative branched-chain 45.5 69 0.0024 28.5 8.2 92 49-143 163-262 (419)
342 4fs3_A Enoyl-[acyl-carrier-pro 45.4 29 0.00099 29.2 5.3 8 227-234 85-92 (256)
343 2k6g_A Replication factor C su 45.3 30 0.001 25.5 4.7 32 46-77 31-64 (109)
344 2yvq_A Carbamoyl-phosphate syn 45.2 1E+02 0.0034 23.6 8.3 36 113-158 38-73 (143)
345 1p9l_A Dihydrodipicolinate red 45.1 1.4E+02 0.0047 25.1 11.1 96 180-286 2-109 (245)
346 3i1j_A Oxidoreductase, short c 45.0 72 0.0025 26.1 7.7 74 46-123 10-90 (247)
347 4g65_A TRK system potassium up 44.9 1.6E+02 0.0054 27.3 10.7 127 164-296 221-366 (461)
348 3tnl_A Shikimate dehydrogenase 44.8 40 0.0014 29.8 6.2 33 46-78 150-183 (315)
349 3i45_A Twin-arginine transloca 44.7 72 0.0025 28.0 8.1 147 101-260 72-233 (387)
350 3h75_A Periplasmic sugar-bindi 44.7 1.5E+02 0.0052 25.5 10.4 73 63-138 165-244 (350)
351 2bkw_A Alanine-glyoxylate amin 44.7 27 0.00091 30.6 5.1 75 49-124 85-166 (385)
352 3k4h_A Putative transcriptiona 44.6 1.3E+02 0.0045 24.8 13.5 62 138-208 35-99 (292)
353 3rot_A ABC sugar transporter, 44.6 1.4E+02 0.0047 25.0 13.9 63 137-208 24-93 (297)
354 3m6m_D Sensory/regulatory prot 44.6 90 0.0031 22.8 13.7 111 177-298 13-137 (143)
355 3hzh_A Chemotaxis response reg 44.6 95 0.0032 23.1 9.9 113 49-174 35-154 (157)
356 2gk3_A Putative cytoplasmic pr 44.5 33 0.0011 29.1 5.5 48 186-236 38-85 (256)
357 3rpe_A MDAB, modulator of drug 44.5 17 0.00058 30.4 3.5 52 192-247 51-109 (218)
358 3lcm_A SMU.1420, putative oxid 44.2 12 0.0004 30.5 2.5 56 57-112 11-83 (196)
359 1f4p_A Flavodoxin; electron tr 44.2 18 0.00063 27.4 3.5 62 64-136 20-92 (147)
360 3grk_A Enoyl-(acyl-carrier-pro 44.2 75 0.0026 27.1 7.9 75 46-124 27-106 (293)
361 3o38_A Short chain dehydrogena 44.2 76 0.0026 26.3 7.8 74 46-123 18-97 (266)
362 3cg4_A Response regulator rece 44.2 81 0.0028 22.7 7.2 109 47-172 4-122 (142)
363 3i6i_A Putative leucoanthocyan 44.1 67 0.0023 27.9 7.7 33 47-79 7-40 (346)
364 3eod_A Protein HNR; response r 43.9 83 0.0029 22.3 12.0 109 177-296 6-125 (130)
365 4iin_A 3-ketoacyl-acyl carrier 43.9 25 0.00085 29.7 4.6 75 46-123 25-103 (271)
366 3l4e_A Uncharacterized peptida 43.9 39 0.0013 27.8 5.7 72 46-125 23-101 (206)
367 3h1g_A Chemotaxis protein CHEY 43.9 85 0.0029 22.3 10.3 110 178-297 5-127 (129)
368 3dhn_A NAD-dependent epimerase 43.9 1.2E+02 0.0041 24.1 10.4 59 50-111 4-76 (227)
369 2z9v_A Aspartate aminotransfer 43.8 22 0.00076 31.3 4.5 63 49-112 82-144 (392)
370 1a4i_A Methylenetetrahydrofola 43.8 71 0.0024 28.1 7.5 148 66-238 57-218 (301)
371 3snr_A Extracellular ligand-bi 43.5 90 0.0031 26.7 8.4 145 101-260 68-222 (362)
372 3hv2_A Response regulator/HD d 43.5 96 0.0033 22.8 12.9 110 177-297 13-133 (153)
373 3lcm_A SMU.1420, putative oxid 43.3 13 0.00044 30.3 2.5 50 199-248 28-100 (196)
374 4imr_A 3-oxoacyl-(acyl-carrier 43.3 64 0.0022 27.3 7.2 95 25-125 10-108 (275)
375 4dad_A Putative pilus assembly 43.2 93 0.0032 22.6 9.6 114 46-173 16-137 (146)
376 3rqi_A Response regulator prot 43.1 1.1E+02 0.0038 23.5 10.3 112 47-173 4-121 (184)
377 3dzz_A Putative pyridoxal 5'-p 43.0 91 0.0031 27.1 8.5 60 49-111 108-169 (391)
378 3grc_A Sensor protein, kinase; 43.0 91 0.0031 22.4 10.4 111 49-173 5-123 (140)
379 3edm_A Short chain dehydrogena 42.9 66 0.0022 26.8 7.2 74 46-123 4-82 (259)
380 3snr_A Extracellular ligand-bi 42.8 92 0.0032 26.6 8.4 87 49-138 134-227 (362)
381 2rdm_A Response regulator rece 42.8 87 0.003 22.1 11.0 109 48-173 3-119 (132)
382 1ycg_A Nitric oxide reductase; 42.7 27 0.00093 31.2 4.9 66 63-135 270-342 (398)
383 3u7q_B Nitrogenase molybdenum- 42.5 39 0.0013 32.2 6.1 141 61-209 236-395 (523)
384 3p2o_A Bifunctional protein fo 42.4 75 0.0026 27.7 7.4 148 65-237 54-212 (285)
385 2vsy_A XCC0866; transferase, g 42.2 39 0.0014 31.6 6.2 110 178-298 406-523 (568)
386 2ebu_A Replication factor C su 42.1 35 0.0012 25.3 4.6 32 46-77 21-54 (112)
387 2nu8_A Succinyl-COA ligase [AD 41.9 1.7E+02 0.0057 25.2 13.5 226 50-295 7-287 (288)
388 4id3_A DNA repair protein REV1 41.9 36 0.0012 23.4 4.5 33 45-77 5-38 (92)
389 3s99_A Basic membrane lipoprot 41.7 1.9E+02 0.0064 25.7 11.3 123 101-236 85-216 (356)
390 3qhp_A Type 1 capsular polysac 41.5 1.1E+02 0.0037 22.9 8.7 120 163-298 16-141 (166)
391 1d4a_A DT-diaphorase, quinone 41.4 18 0.00061 31.1 3.3 35 50-84 2-44 (273)
392 1ygy_A PGDH, D-3-phosphoglycer 41.3 79 0.0027 29.9 8.1 136 50-212 4-173 (529)
393 2amj_A Modulator of drug activ 41.2 15 0.00052 30.1 2.7 43 64-112 38-80 (204)
394 1t0b_A THUA-like protein; treh 41.2 52 0.0018 28.0 6.2 64 63-137 35-106 (252)
395 1t5b_A Acyl carrier protein ph 41.1 34 0.0012 27.1 4.9 57 192-248 24-113 (201)
396 2cok_A Poly [ADP-ribose] polym 41.0 45 0.0015 24.7 5.1 33 45-77 8-41 (113)
397 1nyt_A Shikimate 5-dehydrogena 41.0 59 0.002 27.6 6.6 117 65-204 20-145 (271)
398 3lkb_A Probable branched-chain 41.0 1.4E+02 0.0046 26.1 9.4 85 48-135 141-231 (392)
399 3kjx_A Transcriptional regulat 40.9 1.7E+02 0.0059 25.0 10.8 61 138-207 90-153 (344)
400 1o5i_A 3-oxoacyl-(acyl carrier 40.8 95 0.0032 25.6 7.8 34 46-79 15-49 (249)
401 3h5o_A Transcriptional regulat 40.6 1.7E+02 0.0059 25.0 12.8 61 138-207 84-147 (339)
402 2iss_D Glutamine amidotransfer 40.5 47 0.0016 26.9 5.7 50 47-111 17-66 (208)
403 1ka9_H Imidazole glycerol phos 40.4 59 0.002 26.1 6.2 48 51-113 3-51 (200)
404 1d4a_A DT-diaphorase, quinone 40.3 19 0.00064 31.0 3.3 57 192-248 24-120 (273)
405 3qi7_A Putative transcriptiona 40.2 65 0.0022 29.2 6.9 185 100-299 85-294 (371)
406 3ib6_A Uncharacterized protein 40.1 56 0.0019 25.7 6.0 94 58-160 35-143 (189)
407 3tb6_A Arabinose metabolism tr 40.0 32 0.0011 28.9 4.7 74 64-137 157-239 (298)
408 3gv0_A Transcriptional regulat 39.8 40 0.0014 28.4 5.3 87 50-138 127-227 (288)
409 3g1w_A Sugar ABC transporter; 39.8 1.1E+02 0.0039 25.5 8.4 76 63-138 146-224 (305)
410 2jba_A Phosphate regulon trans 39.5 96 0.0033 21.7 10.1 111 179-300 3-125 (127)
411 2a5l_A Trp repressor binding p 39.4 34 0.0012 27.2 4.6 59 191-249 24-99 (200)
412 2xw6_A MGS, methylglyoxal synt 39.3 61 0.0021 24.9 5.7 89 127-249 30-124 (134)
413 3ej6_A Catalase-3; heme, hydro 39.2 65 0.0022 31.7 7.1 92 46-145 533-646 (688)
414 3l6u_A ABC-type sugar transpor 39.1 40 0.0014 28.2 5.2 71 63-137 155-230 (293)
415 4e3z_A Putative oxidoreductase 39.0 88 0.003 26.1 7.4 73 47-123 23-100 (272)
416 2fwm_X 2,3-dihydro-2,3-dihydro 38.9 94 0.0032 25.6 7.5 34 46-79 3-37 (250)
417 4e7p_A Response regulator; DNA 38.7 1.1E+02 0.0039 22.3 11.0 116 46-174 16-137 (150)
418 2hqr_A Putative transcriptiona 38.6 1.5E+02 0.005 23.5 10.4 106 180-297 2-115 (223)
419 3c3k_A Alanine racemase; struc 38.5 1.7E+02 0.0057 24.2 10.4 61 138-208 30-93 (285)
420 2zay_A Response regulator rece 38.5 1.1E+02 0.0038 22.1 9.1 108 48-172 6-123 (147)
421 1l7b_A DNA ligase; BRCT, autos 38.5 37 0.0013 24.1 4.1 33 45-77 5-38 (92)
422 1ydg_A Trp repressor binding p 38.4 22 0.00076 28.8 3.3 70 179-248 7-105 (211)
423 3ly1_A Putative histidinol-pho 38.2 54 0.0018 28.3 6.1 62 49-113 91-152 (354)
424 3n75_A LDC, lysine decarboxyla 38.1 1.7E+02 0.0057 28.9 10.1 79 51-138 2-86 (715)
425 3l07_A Bifunctional protein fo 37.9 75 0.0026 27.7 6.7 148 65-237 55-213 (285)
426 3i4f_A 3-oxoacyl-[acyl-carrier 37.9 85 0.0029 26.0 7.1 74 47-123 4-81 (264)
427 2ark_A Flavodoxin; FMN, struct 37.8 53 0.0018 26.0 5.5 49 192-249 24-80 (188)
428 1qv9_A F420-dependent methylen 37.8 31 0.0011 29.4 4.0 52 102-159 64-120 (283)
429 3h5l_A Putative branched-chain 37.6 1.4E+02 0.0047 26.5 8.9 79 178-259 164-251 (419)
430 2yv1_A Succinyl-COA ligase [AD 37.5 2E+02 0.0068 24.8 15.9 175 51-237 14-214 (294)
431 3u62_A Shikimate dehydrogenase 37.5 24 0.00084 30.0 3.5 151 61-240 14-178 (253)
432 3l4e_A Uncharacterized peptida 37.5 62 0.0021 26.5 5.9 68 177-250 26-100 (206)
433 2hqr_A Putative transcriptiona 37.4 1.5E+02 0.0052 23.4 11.3 110 51-175 1-113 (223)
434 2qr3_A Two-component system re 37.4 1.1E+02 0.0038 21.8 10.5 109 50-173 3-122 (140)
435 3nnk_A Ureidoglycine-glyoxylat 37.2 25 0.00084 31.2 3.7 62 49-112 87-148 (411)
436 1vjo_A Alanine--glyoxylate ami 37.2 30 0.001 30.5 4.2 62 49-112 108-169 (393)
437 1rpn_A GDP-mannose 4,6-dehydra 37.2 87 0.003 26.8 7.2 34 46-79 10-44 (335)
438 2iw1_A Lipopolysaccharide core 36.9 2E+02 0.0067 24.6 13.8 174 102-298 136-338 (374)
439 3bbl_A Regulatory protein of L 36.9 1.8E+02 0.0061 24.1 11.0 61 138-207 30-93 (287)
440 4a5o_A Bifunctional protein fo 36.9 64 0.0022 28.1 6.1 147 65-237 56-213 (286)
441 3okp_A GDP-mannose-dependent a 36.8 1.8E+02 0.0063 24.9 9.5 19 279-297 326-344 (394)
442 3eqz_A Response regulator; str 36.8 1.1E+02 0.0038 21.6 8.7 109 50-175 3-123 (135)
443 4eyg_A Twin-arginine transloca 36.7 1.2E+02 0.0043 26.0 8.3 93 49-143 138-239 (368)
444 3rfq_A Pterin-4-alpha-carbinol 36.4 46 0.0016 27.0 4.8 50 61-114 50-101 (185)
445 2dr1_A PH1308 protein, 386AA l 36.4 1.9E+02 0.0065 24.9 9.5 33 177-209 94-126 (386)
446 3oaa_G ATP synthase gamma chai 36.4 1.5E+02 0.0052 25.6 8.5 40 254-293 111-154 (286)
447 3fij_A LIN1909 protein; 11172J 36.3 1.4E+02 0.0047 25.0 8.2 41 63-112 31-71 (254)
448 1xq1_A Putative tropinone redu 36.2 1.3E+02 0.0044 24.8 8.0 34 46-79 10-44 (266)
449 1iuk_A Hypothetical protein TT 36.2 56 0.0019 24.9 5.1 91 179-275 14-120 (140)
450 4dry_A 3-oxoacyl-[acyl-carrier 36.1 78 0.0027 26.9 6.6 74 46-123 29-107 (281)
451 3m3p_A Glutamine amido transfe 36.1 48 0.0016 28.1 5.1 53 178-237 3-57 (250)
452 2gkg_A Response regulator homo 36.1 1.1E+02 0.0037 21.3 10.7 110 179-298 6-126 (127)
453 2jgn_A DBX, DDX3, ATP-dependen 35.6 94 0.0032 24.5 6.7 70 164-236 33-104 (185)
454 2rgy_A Transcriptional regulat 35.2 1.6E+02 0.0055 24.4 8.5 62 138-208 30-97 (290)
455 3cnb_A DNA-binding response re 35.1 1.2E+02 0.0042 21.6 13.7 112 178-299 8-132 (143)
456 2iuf_A Catalase; oxidoreductas 35.0 1.7E+02 0.0057 28.9 9.3 92 46-145 525-648 (688)
457 2ch1_A 3-hydroxykynurenine tra 35.0 34 0.0012 30.1 4.3 62 49-112 92-153 (396)
458 2lnd_A De novo designed protei 34.9 1.1E+02 0.0039 21.2 7.2 68 230-299 30-103 (112)
459 1kjq_A GART 2, phosphoribosylg 34.9 74 0.0025 28.2 6.5 74 49-123 10-95 (391)
460 3ksm_A ABC-type sugar transpor 34.9 66 0.0023 26.4 5.9 84 50-138 127-224 (276)
461 3eul_A Possible nitrate/nitrit 34.9 1.3E+02 0.0045 21.9 10.9 113 177-298 14-136 (152)
462 1t2a_A GDP-mannose 4,6 dehydra 34.7 95 0.0033 27.1 7.2 41 39-79 10-54 (375)
463 3tsc_A Putative oxidoreductase 34.7 1.1E+02 0.0039 25.5 7.4 77 46-123 7-97 (277)
464 1m32_A 2-aminoethylphosphonate 34.5 39 0.0013 29.1 4.5 63 49-112 79-141 (366)
465 2huf_A Alanine glyoxylate amin 34.5 36 0.0012 29.9 4.3 62 49-112 93-154 (393)
466 2yxd_A Probable cobalt-precorr 34.4 1.5E+02 0.005 22.4 9.8 94 109-212 65-159 (183)
467 3ek2_A Enoyl-(acyl-carrier-pro 34.4 52 0.0018 27.3 5.2 28 177-204 13-43 (271)
468 3rih_A Short chain dehydrogena 34.4 1.8E+02 0.0061 24.7 8.8 74 46-123 37-115 (293)
469 3e8x_A Putative NAD-dependent 34.3 40 0.0014 27.5 4.3 34 46-79 17-51 (236)
470 2wsb_A Galactitol dehydrogenas 34.1 1.3E+02 0.0045 24.4 7.7 71 46-123 7-82 (254)
471 3r0j_A Possible two component 34.0 1.9E+02 0.0065 23.5 11.2 111 48-173 21-137 (250)
472 3gem_A Short chain dehydrogena 34.0 37 0.0013 28.6 4.1 73 44-124 21-96 (260)
473 3kcn_A Adenylate cyclase homol 34.0 1.4E+02 0.0047 21.9 11.7 109 50-173 4-119 (151)
474 3pk0_A Short-chain dehydrogena 33.9 1.2E+02 0.0042 25.2 7.5 74 46-123 6-84 (262)
475 3iwh_A Rhodanese-like domain p 33.9 52 0.0018 23.5 4.4 32 47-78 54-85 (103)
476 3snk_A Response regulator CHEY 33.9 1.3E+02 0.0044 21.5 9.5 109 178-297 14-133 (135)
477 1b0a_A Protein (fold bifunctio 33.8 72 0.0025 27.8 5.9 146 66-237 55-211 (288)
478 2d1y_A Hypothetical protein TT 33.8 1.2E+02 0.0043 24.9 7.5 68 47-123 3-73 (256)
479 1ykg_A SIR-FP, sulfite reducta 33.7 22 0.00074 27.9 2.4 61 64-135 29-100 (167)
480 1vjo_A Alanine--glyoxylate ami 33.7 1.6E+02 0.0053 25.7 8.5 13 257-269 231-243 (393)
481 1k68_A Phytochrome response re 33.6 1.3E+02 0.0043 21.3 12.8 111 178-297 2-131 (140)
482 1obo_A Flavodoxin; electron tr 33.5 53 0.0018 25.3 4.7 38 99-136 43-88 (169)
483 3d7l_A LIN1944 protein; APC893 33.4 64 0.0022 25.4 5.3 59 51-110 4-66 (202)
484 3kto_A Response regulator rece 33.4 1.3E+02 0.0045 21.5 9.5 109 50-173 6-122 (136)
485 2z61_A Probable aspartate amin 33.3 58 0.002 28.4 5.5 53 49-112 112-164 (370)
486 2pjk_A 178AA long hypothetical 33.3 68 0.0023 25.6 5.4 49 62-114 42-93 (178)
487 3s5j_B Ribose-phosphate pyroph 33.2 1.2E+02 0.0039 27.0 7.3 246 1-280 1-273 (326)
488 2ywd_A Glutamine amidotransfer 33.0 55 0.0019 25.9 4.9 79 51-145 3-90 (191)
489 3gyb_A Transcriptional regulat 32.9 1.1E+02 0.0038 25.1 7.1 86 50-138 118-215 (280)
490 3k9c_A Transcriptional regulat 32.8 2.1E+02 0.0072 23.7 13.2 136 138-298 33-183 (289)
491 4gkb_A 3-oxoacyl-[acyl-carrier 32.8 2.2E+02 0.0076 23.9 9.2 74 46-123 3-79 (258)
492 3nbm_A PTS system, lactose-spe 32.8 1.1E+02 0.0036 22.4 5.9 78 178-265 6-89 (108)
493 4egb_A DTDP-glucose 4,6-dehydr 32.7 51 0.0017 28.5 5.0 63 48-111 22-107 (346)
494 3d8u_A PURR transcriptional re 32.6 2E+02 0.0069 23.4 9.9 62 138-208 25-89 (275)
495 2dri_A D-ribose-binding protei 32.5 62 0.0021 26.8 5.3 82 51-137 124-217 (271)
496 3pzy_A MOG; ssgcid, seattle st 32.5 45 0.0015 26.3 4.1 49 61-114 28-78 (164)
497 2ayx_A Sensor kinase protein R 32.5 2.1E+02 0.0071 23.5 11.6 110 177-298 128-248 (254)
498 3bul_A Methionine synthase; tr 32.5 1.6E+02 0.0054 28.4 8.6 86 49-141 97-192 (579)
499 3dbi_A Sugar-binding transcrip 32.4 2.3E+02 0.008 24.0 11.5 63 137-207 84-149 (338)
500 3get_A Histidinol-phosphate am 32.3 26 0.00089 30.6 2.9 60 49-113 105-164 (365)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-47 Score=341.93 Aligned_cols=242 Identities=18% Similarity=0.173 Sum_probs=214.2
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~ 125 (301)
+||.|++||||||.+++.++.+.|+++|++++.+|+|++++.++...+.+.+.+++.||||||||+|||++|++.+...+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999988777888887789999999999999999999987765
Q ss_pred C--CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc--c-CCCCCCEEEEEcCCcChhHHHHHHHhC
Q 022176 126 T--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (301)
Q Consensus 126 ~--~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~--~-~~~~~~~vLi~rg~~~~~~L~~~L~~~ 200 (301)
. .+.+++|||++|+++|+++ |+.++++|+.+++++|++.+. . ....+++||++||+.+++.|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 4 3589999999999999999 999999988899999999886 3 234689999999999999999999999
Q ss_pred CCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCee
Q 022176 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNV 276 (301)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~--~~~~~~i~aIG~~Ta~al~~~G~~~~ 276 (301)
|++|.++++|++++.+...+.+.+.+ +.+|+|+|||++++++|++.+... ...+++++|||++|+++++++|++++
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~~ 235 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWPEIGRLPLFVPSPRVAEMARELGAQRV 235 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGGGHHHHTTSCEEESSHHHHHHHHHTTCSSE
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHcCCCce
Confidence 99999999999998887655443332 689999999999999999998754 12378999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHH
Q 022176 277 YYPTHPGLEGWVDSILE 293 (301)
Q Consensus 277 ~v~~~ps~e~ll~ai~~ 293 (301)
+++++|+.++|+++|.+
T Consensus 236 ~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 236 IDCRGASAPALLAALTS 252 (254)
T ss_dssp EECSSSSHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHh
Confidence 99999999999999976
No 2
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=4.9e-48 Score=347.14 Aligned_cols=246 Identities=20% Similarity=0.189 Sum_probs=209.6
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022176 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~ 124 (301)
+.+..|++||||||.++++++++.|+++|++++.+|++++++.++...+.+.+.+++.||||||||+|||++|++.+...
T Consensus 9 ~~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~ 88 (269)
T 3re1_A 9 SMDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEV 88 (269)
T ss_dssp ----CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999998876788888778999999999999999999998776
Q ss_pred CCC--CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc--c-CCCCCCEEEEEcCCcChhHHHHHHHh
Q 022176 125 GTP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSN 199 (301)
Q Consensus 125 ~~~--~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~--~-~~~~~~~vLi~rg~~~~~~L~~~L~~ 199 (301)
+.+ +++++|||++|+++|+++ |+.++++|+.+++++|++.+. . ....+++||++||+.+++.|.+.|++
T Consensus 89 ~~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~ 162 (269)
T 3re1_A 89 WPQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRE 162 (269)
T ss_dssp CSSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHH
T ss_pred CCCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHH
Confidence 543 589999999999999999 999999888899999998875 3 13368999999999999999999999
Q ss_pred CCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCe
Q 022176 200 RGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~~~l~~~--~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
+|++|.++++|++++.+...+.+.+. .+.+|+|+|||++++++|++.+... ...+++++|||++|+++++++|+++
T Consensus 163 ~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~ 242 (269)
T 3re1_A 163 RGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSWPDLAGLPLFVPSPRVASLAQAAGARN 242 (269)
T ss_dssp TTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGHHHHTTSCEEESSHHHHHHHHHHTCSS
T ss_pred CCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHCCCCc
Confidence 99999999999999887654433322 2689999999999999999988653 1237899999999999999999999
Q ss_pred eEecCCCCHHHHHHHHHHHHH
Q 022176 276 VYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 276 ~~v~~~ps~e~ll~ai~~~~~ 296 (301)
++++++|+.++|+++|.++++
T Consensus 243 ~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 243 VIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp EEECSSSSHHHHHHHHHHSCC
T ss_pred eEECCCCCHHHHHHHHHHHhc
Confidence 999999999999999998764
No 3
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=5e-47 Score=343.45 Aligned_cols=251 Identities=18% Similarity=0.127 Sum_probs=206.5
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC-CCcc
Q 022176 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFD 104 (301)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d 104 (301)
+.-+.+++|||. +||.|++|||||+.+ ++.+.+.|+++|++++++|++++++. +.+.+.+.+.++ +.||
T Consensus 17 ~~~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d 86 (286)
T 3d8t_A 17 GLDSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVD 86 (286)
T ss_dssp ------------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCS
T ss_pred hccCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCC
Confidence 445668999999 999999999999987 99999999999999999999999997 556677777666 4799
Q ss_pred EEEEeChHHHHHHHHHHHHcCCC------CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCC
Q 022176 105 WIIITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKK 178 (301)
Q Consensus 105 ~IiftS~~av~~f~~~l~~~~~~------~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~ 178 (301)
||||||+|||++|++.+.+.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.. +
T Consensus 87 ~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g 155 (286)
T 3d8t_A 87 LFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----G 155 (286)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----C
T ss_pred EEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----C
Confidence 99999999999999998876544 689999999999999999 99999999 8999999998865 6
Q ss_pred C-EEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc----
Q 022176 179 C-TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---- 251 (301)
Q Consensus 179 ~-~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~---- 251 (301)
+ +||++||+.+++.|.+.|+++|++|.++++|++++.......+.+.+ +.+|+|+|||+++|++|++.+...+
T Consensus 156 ~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~~~~~~~~~~~~~~~ 235 (286)
T 3d8t_A 156 RGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALRE 235 (286)
T ss_dssp CSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHH
T ss_pred CceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHHhccchhh
Confidence 8 99999999999999999999999999999999995432223333333 6799999999999999999886421
Q ss_pred -CC-CceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 252 -QW-SNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 252 -~~-~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.. +++++|||++|+++++++|++++++++.|+.++|+++|.+++..
T Consensus 236 ~l~~~~~i~aIG~~TA~al~~~G~~~~~~a~~~~~~~L~~~l~~~~~~ 283 (286)
T 3d8t_A 236 ALNTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKRALQK 283 (286)
T ss_dssp HHTTTSEEEEESHHHHHHHHHTTCCCSEEECSSCHHHHHHHHHHHHHH
T ss_pred HhhcCCEEEEECHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 23 68899999999999999999998999999999999999998754
No 4
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=2.7e-46 Score=338.60 Aligned_cols=251 Identities=19% Similarity=0.232 Sum_probs=209.2
Q ss_pred cccCCCCCCCeEEEeCCC-Cch---HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHH
Q 022176 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (301)
Q Consensus 42 ~~~~~~l~g~~IlitR~~-~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f 117 (301)
++.++++.||+|++||+. +++ +++++.|+++|++++.+|++++++.+ .+.+...+..+..||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 567899999999999997 777 99999999999999999999999974 3567777766789999999999999999
Q ss_pred HHHHHHcCC------------CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEc
Q 022176 118 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 185 (301)
Q Consensus 118 ~~~l~~~~~------------~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~r 185 (301)
++.+.+.+. .+.+++|||++|+++|+++ |+.+ ++|..+++++|++.+......+++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998876542 3689999999999999999 9988 78888999999999976654678999999
Q ss_pred CCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH---cCCCCEEEEEChHHHHHHHHhhhcc---cCCCceEEE
Q 022176 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ---ALSIPVVAVASPSAVRSWVNLISDT---EQWSNSVAC 259 (301)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~I~ftS~sav~~~~~~l~~~---~~~~~~i~a 259 (301)
|+.+++.|.+.|+++|++|.++++|++++.+...+.+.+. .+.+|+|+|||+++|++|++.+... ...+++++|
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~a 244 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAA 244 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEE
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhccccccCCEEEE
Confidence 9999999999999999999999999999876543333222 2689999999999999999988652 123678999
Q ss_pred ECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccCC
Q 022176 260 IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 260 IG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
||++|+++++++|++++++|+.|+.++|+++|.+++..||.
T Consensus 245 IG~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~~~~~~ 285 (286)
T 1jr2_A 245 IGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQPHGC 285 (286)
T ss_dssp SSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHTC----
T ss_pred ECHHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHHhhcCC
Confidence 99999999999999998999999999999999999988874
No 5
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=7.9e-46 Score=327.18 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=203.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~ 129 (301)
||+||||||.++++++++.|+++|++++.+|++++++.++.+ ..+..++.||||||||+|||++|++.+.. .+.+.
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~---~~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQ---AQLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCH---HHHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHH---HHHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 799999999999999999999999999999999999987543 33345688999999999999999998753 45679
Q ss_pred eEEEEchhhHHHHHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 130 ~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
+++|||++|+++|+++ |+.++++|+.+ ++++|++.+......+++||++||+.+++.|.+.|+++|++|.+++
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999887 9999998776544478999999999999999999999999999999
Q ss_pred eeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc---CCCceEEEECHHHHHHHHHcCCCeeEecCCCC
Q 022176 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (301)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~---~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps 283 (301)
+|++++.+...+.+.+.+ +.+|+|+|||++++++|++.++... ..+++++|||++|+++++++|+++++++++|+
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~~ta~~l~~~G~~~~~va~~p~ 230 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAAN 230 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSSS
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECHHHHHHHHHcCCCceEeCCCCC
Confidence 999999887665544333 5899999999999999999987542 12688999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 022176 284 LEGWVDSIL 292 (301)
Q Consensus 284 ~e~ll~ai~ 292 (301)
.++|+++|+
T Consensus 231 ~~~ll~al~ 239 (240)
T 3mw8_A 231 QAAVLDALG 239 (240)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999999874
No 6
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=2.2e-45 Score=327.96 Aligned_cols=240 Identities=19% Similarity=0.152 Sum_probs=206.5
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC-CCccEEEEeChHHHHHHHHHHHH
Q 022176 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d~IiftS~~av~~f~~~l~~ 123 (301)
++||.|++||+||+.+ ++.+.+.|+++|++++++|++++++. +.+.+...+.++ +.||||||||+|+|++|++.+.+
T Consensus 3 ~~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~ 80 (261)
T 1wcw_A 3 RLEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKA 80 (261)
T ss_dssp -----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHH
Confidence 3899999999999997 99999999999999999999999998 666777777666 58999999999999999999877
Q ss_pred cCCC------CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCC-EEEEEcCCcChhHHHHH
Q 022176 124 AGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEG 196 (301)
Q Consensus 124 ~~~~------~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~-~vLi~rg~~~~~~L~~~ 196 (301)
.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.. ++ +||++||+.+++.|.+.
T Consensus 81 ~~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~ 149 (261)
T 1wcw_A 81 LGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENA 149 (261)
T ss_dssp TTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHH
T ss_pred hCchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHH
Confidence 6543 589999999999999999 99999999 8999999998865 68 99999999999999999
Q ss_pred HHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhccc-----CC-CceEEEECHHHHHHH
Q 022176 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----QW-SNSVACIGETTASAA 268 (301)
Q Consensus 197 L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~-----~~-~~~i~aIG~~Ta~al 268 (301)
|+++|++|.++++|++++.....+.+.+.+ +.+|+|+|||++++++|++.+...+ .. +++++|||++|++++
T Consensus 150 L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~l~~~~~~~aIG~~Ta~~l 229 (261)
T 1wcw_A 150 LAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADAL 229 (261)
T ss_dssp HHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHH
T ss_pred HHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHhhccchhHHhhcCCEEEEECHHHHHHH
Confidence 999999999999999995432222333323 6899999999999999999876421 22 678999999999999
Q ss_pred HHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 269 KRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 269 ~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+++|++++++++.|+.++|+++|.+++..
T Consensus 230 ~~~G~~~~~~a~~~~~~~l~~~l~~~~~~ 258 (261)
T 1wcw_A 230 REWGVKPFYVDETERLGSLLQGFKRALQK 258 (261)
T ss_dssp HHTTCCCSEEECSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCceecCCCCHHHHHHHHHHHhhh
Confidence 99999998899999999999999998753
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=100.00 E-value=1.3e-37 Score=272.96 Aligned_cols=202 Identities=21% Similarity=0.226 Sum_probs=167.2
Q ss_pred cEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC----CCCceEEEEchhhHHHHHHHhhccc
Q 022176 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (301)
Q Consensus 75 ~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~----~~~~~i~avG~~Ta~~L~~~~~~~~ 150 (301)
.++.+|+++|++.++. .++++||||||||+|||++|++.+.+.+ +.+.+++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 5889999999998752 2678999999999999999998765322 34789999999999999999
Q ss_pred CCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CC
Q 022176 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS 228 (301)
Q Consensus 151 ~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~ 228 (301)
|+.++++|+.+++++|++.|.... .+++||++||+.+++.|.+.|+++|++|.++++|++++.+.... ..+.+ +.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLS-EQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHH-HHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHH-HHHHHhcCC
Confidence 999999999899999999886532 57899999999999999999999999999999999999876543 33333 68
Q ss_pred CCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHH
Q 022176 229 IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 229 ~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~ 294 (301)
+|+|+|||++++++|++.+.. ..+.+++|||++|+++++++|+++ .++++|+.++|+++|++.
T Consensus 162 ~d~v~ftS~s~v~~~~~~~~~--~~~~~~~aIG~~Ta~~l~~~G~~v-~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 162 KSILIFTAISHAKAFLHYFEF--LENYTAISIGNTTALYLQEQGIPS-YIAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEECSHHHHHHHHHHSCC--CTTCEEEESSHHHHHHHHHTTCCE-EECSSSSHHHHHHHHHHT
T ss_pred CeEEEEECHHHHHHHHHHhCc--ccCCEEEEECHHHHHHHHHcCCCc-eeCCCCCHHHHHHHHHHH
Confidence 999999999999999998852 236899999999999999999986 579999999999999875
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.67 E-value=3.2e-16 Score=136.74 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=102.1
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~ 127 (301)
+.|++||++|+....+.|.+.|+++|++|..+|+|++++.++...+.+.+ ..+.+|||+|||+++|+.|++.+. ...
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 46899999999999999999999999999999999999987644444555 457899999999999999998663 345
Q ss_pred CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 128 ~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
+.+++|||+.|+++++++ |++++ +|+.++.++|++.+.+.
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHT
T ss_pred CCEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHH
Confidence 899999999999999999 99974 78899999999988764
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.66 E-value=2.6e-16 Score=141.68 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=105.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~- 124 (301)
...|++||++|+....+.|.+.|+++|++|..+|+|++++.++. +.+.+.+...+.+|+|+|||+++|+.|++.+.+.
T Consensus 154 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~ 233 (286)
T 1jr2_A 154 ESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELS 233 (286)
T ss_dssp CCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhc
Confidence 35689999999998899999999999999999999999987653 3455555444789999999999999999987652
Q ss_pred --CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC
Q 022176 125 --GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (301)
Q Consensus 125 --~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~ 175 (301)
.+.+++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+..
T Consensus 234 ~~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 234 GDNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred cccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 245789999999999999999 999988899999999999887654
No 10
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.64 E-value=3.8e-16 Score=139.49 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=105.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~- 124 (301)
...|++||++|+....+.|.+.|+++|++|..+|+|++++.+. .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRV-EVERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHH-HHTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHH-HcCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998763 34444445 33689999999999999999887542
Q ss_pred -CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC
Q 022176 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (301)
Q Consensus 125 -~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~ 175 (301)
.+.+++++|||+.|+++++++ |++++++|+.++.++|++.|.+..
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~ 262 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQP 262 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHh
Confidence 245899999999999999999 999988899999999999997764
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.1e-15 Score=135.33 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=104.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~- 124 (301)
...|++||++|+....+.|.+.|+++|++|..+++|++++.++ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 5678999999999999999999999999999999999998764 34555555 34689999999999999999987543
Q ss_pred -CCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 125 -~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.+.+++++|||+.|+++++++ |++++++++.++.++|++.|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 245799999999999999999 9999888999999999988864
No 12
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.62 E-value=9.2e-16 Score=134.54 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceE
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSV 257 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i 257 (301)
|++||+.|+....+.|.+.|+++|+++..+++|+..+.++. ...+..+.++|+|+|||+++|+.|++.+... ..+.++
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~-~~~~~~l~~~d~viftS~~aV~~~~~~l~~~-l~~~~~ 78 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVT-QAQLDELSRADILIFISTSAVSFATPWLKDQ-WPKATY 78 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCC-HHHHHHHTTCSEEEECSHHHHHHHHHHHTTC-CCSSEE
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccH-HHHHHHhcCCCEEEEECHHHHHHHHHHHHhh-CcCCeE
Confidence 57999999999999999999999999999999999998754 3344456889999999999999999987632 236899
Q ss_pred EEECHHHHHHHHHcCCCeeEecCCC-CHHHHHHHHH
Q 022176 258 ACIGETTASAAKRLGLKNVYYPTHP-GLEGWVDSIL 292 (301)
Q Consensus 258 ~aIG~~Ta~al~~~G~~~~~v~~~p-s~e~ll~ai~ 292 (301)
+|||++|+++|+++|+.++++|+.+ +.++|++.+.
T Consensus 79 ~aVG~~Ta~~L~~~G~~~~~~p~~~~~~e~L~~~~~ 114 (240)
T 3mw8_A 79 YAVGDATADALALQGITAERSPADSQATEGLLTLPS 114 (240)
T ss_dssp EESSHHHHHHHHHTTCCCEECC---CCGGGGGGCGG
T ss_pred EEECHHHHHHHHHcCCCCccCCCCcCCHHHHHHhhh
Confidence 9999999999999999999999988 9999998654
No 13
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.61 E-value=8.8e-16 Score=136.21 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=98.2
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---
Q 022176 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (301)
Q Consensus 50 g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~--- 124 (301)
|+ +||++|+....+.|.+.|+++|++|..+|+|++++.++ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAL-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHH-HHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 88 99999999999999999999999999999999996432 23333334 23679999999999999999865321
Q ss_pred --CCC-CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 125 --~~~-~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
.+. +.+++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 124 689999999999999999 99998889899999999888653
No 14
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.61 E-value=1.7e-15 Score=136.48 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=98.9
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---
Q 022176 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (301)
Q Consensus 50 g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~--- 124 (301)
|+ +||++|+....+.|.+.|+++|++|..+|+|++++.++ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999996432 23333344 34789999999999999999865321
Q ss_pred --CCC-CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 125 --~~~-~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
.+. +++++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 134 789999999999999999 99998889899999999888653
No 15
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.42 E-value=0.059 Score=46.86 Aligned_cols=194 Identities=9% Similarity=0.015 Sum_probs=109.6
Q ss_pred HHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++ |+++.......-. .+.+...+.++. -.++|.||+.... +...+++.+.+. ++++++++...
T Consensus 30 gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 104 (304)
T 3gbv_A 30 GIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSCC
T ss_pred HHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 345566777 8888765543221 232222222322 3689999998754 345555555543 68899998653
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEc----CCcC-------hhHHHHHHHhCCCeeEE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVVR 206 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~r----g~~~-------~~~L~~~L~~~G~~v~~ 206 (301)
. .. ..+.. +..+. ..+..+++.|.+.....++|+++. |... ..-+.+.|+++|..+..
T Consensus 105 ~----~~-----~~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 105 K----DA-----PPLAF-FGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp T----TS-----CCSEE-EECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred C----CC-----CceEE-EecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 1 11 01222 22222 234455666666543347999997 4322 23467788888887766
Q ss_pred EeeeeeeeCCCCcHH----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHH--HHHHHHcCCC
Q 022176 207 LNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT--ASAAKRLGLK 274 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~T--a~al~~~G~~ 274 (301)
..++..........+ ++....++++|+..+-. +-.+++.+.+.+..++.+++++... .+.+. -|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~~~~~~~-~~~~ 246 (304)
T 3gbv_A 175 LELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLERNVTCLK-EGTV 246 (304)
T ss_dssp EEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHHHHHHHH-HTSE
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHH-cCce
Confidence 655544332222222 22222478999999887 6667777666554467888886544 44444 4654
No 16
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.30 E-value=0.013 Score=51.03 Aligned_cols=206 Identities=10% Similarity=0.029 Sum_probs=114.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++..+..-.-. .....+.+.+ .-.+.|.||+.+...-...++.+.+ .+++++++|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~----~ 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYIL-ETGSADGVIISKIEPNDPRVRFMTE---RNMPFVTHGRSD----M 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHH-HHTCCSEEEEESCCTTCHHHHHHHH---TTCCEEEESCCC----S
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHH-HcCCccEEEEecCCCCcHHHHHHhh---CCCCEEEECCcC----C
Confidence 3445666789888766432211 1112333333 2268999999865543344555554 478899998653 1
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.. ++..+.......+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++. .+
T Consensus 101 ~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---~~ 169 (288)
T 3gv0_A 101 GI------EHAFHDFDNEAYAYEAVERLAQC--GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVT---IE 169 (288)
T ss_dssp SC------CCEEEEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCC---TT
T ss_pred CC------CCcEEEeCcHHHHHHHHHHHHHC--CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheec---cc
Confidence 12 33322221122345566677665 34789999887542 346678889987664332221 22
Q ss_pred CCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHH
Q 022176 217 HVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (301)
Q Consensus 217 ~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ 286 (301)
...+ +.... + ..+|+|+..+-..+..+++.+.+.+. .++.+++++..-......-++..+. .+.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~----~~~~~ 245 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQSAEFLNWIKPQIHTVN----EDIKL 245 (288)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEESSTTHHHHCTTSEEEE----CCHHH
T ss_pred cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEecChHHHhccCCCceEEe----cCHHH
Confidence 2222 12222 2 36899999998888888888877653 3677888765443333323343222 34555
Q ss_pred HHHHHHHH
Q 022176 287 WVDSILEA 294 (301)
Q Consensus 287 ll~ai~~~ 294 (301)
|.+...+.
T Consensus 246 ~g~~a~~~ 253 (288)
T 3gv0_A 246 AGRELAKA 253 (288)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 17
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.16 E-value=0.1 Score=45.18 Aligned_cols=207 Identities=10% Similarity=-0.002 Sum_probs=110.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..... ..+.+...+.++. -.++|.||+.... .....++.+.+ .++++++++...
T Consensus 25 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 96 (291)
T 3l49_A 25 QAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKIND---AGIPLFTVDTAT 96 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHH---TTCCEEEESCCC
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCcEEEecCCC
Confidence 3455667788988876532 1222222222222 2579999988654 55555665655 468899998754
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEE-Eee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR-LNT 209 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~-~~v 209 (301)
. . ++..+.......+..+++.|.+.....++|+++.+.... .-+.+.|++. |+++.. ..+
T Consensus 97 ~-----~------~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~ 165 (291)
T 3l49_A 97 P-----H------AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELR 165 (291)
T ss_dssp T-----T------CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBC
T ss_pred C-----C------cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeecc
Confidence 1 2 332222211223455666666521134789999876542 2456777777 454211 111
Q ss_pred eeeeeCCCCcH-------HHHHHcC---CCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH--HHHHHHHcCCCeeE
Q 022176 210 YTTEPVHHVDQ-------TVLKQAL---SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET--TASAAKRLGLKNVY 277 (301)
Q Consensus 210 Y~~~~~~~~~~-------~~~~~~~---~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~--Ta~al~~~G~~~~~ 277 (301)
+ ......+ ++++... ++|+|+..+-..+..+++.+.+.+..++.+++++.. ..+.+. .|..+..
T Consensus 166 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~-~~~~p~l 241 (291)
T 3l49_A 166 D---VIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVA-DPESPAG 241 (291)
T ss_dssp C---CSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHH-CTTSCEE
T ss_pred C---CCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHH-CCCCCeE
Confidence 1 1111111 1222224 789999999888888888887765336777777543 333333 3553333
Q ss_pred ecCCCCHHHHHHHHH
Q 022176 278 YPTHPGLEGWVDSIL 292 (301)
Q Consensus 278 v~~~ps~e~ll~ai~ 292 (301)
..-..+.+.+.....
T Consensus 242 ttv~~~~~~~g~~av 256 (291)
T 3l49_A 242 AVAAQQPSEIGKLAV 256 (291)
T ss_dssp EEEECCHHHHHHHHH
T ss_pred EEEecCHHHHHHHHH
Confidence 222344555544433
No 18
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=96.07 E-value=0.21 Score=41.64 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=86.6
Q ss_pred CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEE
Q 022176 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (301)
Q Consensus 127 ~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~ 206 (301)
.+..++.-.-.|++.|++.+ ++++..+ +.++-++++.|......+.+|.++.-..
T Consensus 50 ~~~dVIISRGgta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg~~~------------------ 104 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIAYKH------------------ 104 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEEESS------------------
T ss_pred CCCeEEEECChHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEeCcc------------------
Confidence 34556666667899999875 7776555 3567788888765443445766664332
Q ss_pred EeeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHH
Q 022176 207 LNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 285 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e 285 (301)
.... ...+.+.+ -++....++|+..++..++.+.+. ++.++.=|..+.+.++++|++.+.+ ..+.+
T Consensus 105 ------~~~~--~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~---G~~vvVG~~~~~~~A~~~Gl~~vli--~sg~e 171 (196)
T 2q5c_A 105 ------SIVD--KHEIEAMLGVKIKEFLFSSEDEITTLISKVKTE---NIKIVVSGKTVTDEAIKQGLYGETI--NSGEE 171 (196)
T ss_dssp ------CSSC--HHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHT---TCCEEEECHHHHHHHHHTTCEEEEC--CCCHH
T ss_pred ------hhhH--HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCeEEECCHHHHHHHHHcCCcEEEE--ecCHH
Confidence 2111 12222222 255667777777777777777664 4677767889999999999987654 24688
Q ss_pred HHHHHHHHHH
Q 022176 286 GWVDSILEAL 295 (301)
Q Consensus 286 ~ll~ai~~~~ 295 (301)
++.+++.++.
T Consensus 172 SI~~Ai~eA~ 181 (196)
T 2q5c_A 172 SLRRAIEEAL 181 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 19
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=96.00 E-value=0.034 Score=48.36 Aligned_cols=182 Identities=9% Similarity=-0.002 Sum_probs=103.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+.......++ .....+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 98 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT-----AEDIVREREAVGQFFERRVDGLILAPSEGEHDYLR---TELPKTFPIVAVNRELR- 98 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHH---HSSCTTSCEEEESSCCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH---HhhccCCCEEEEecccC-
Confidence 3455677788998875432 1122222222222 26899999988765333333 33335889999987642
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..+.......+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++...
T Consensus 99 ---~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 99 ---IP------GCGAVLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp ---CT------TCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 12 44332222222344566667664 34689999887642 34667888888765432221111
Q ss_pred eCCCCc-HHHHHHc---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 214 PVHHVD-QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 214 ~~~~~~-~~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
...... +.+.+.+ ..+|+|+..+-..+..+++.+.+.+. .++.+++++..-
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 111111 2222222 57899999998888888888876653 367788876543
No 20
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.90 E-value=0.14 Score=44.67 Aligned_cols=202 Identities=8% Similarity=-0.025 Sum_probs=111.4
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHH
Q 022176 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (301)
Q Consensus 50 g~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~ 118 (301)
+++|.+.-+...+ ..+.+.++++|+++..+. ....+.+...+.++. -.++|.||+.+.. .....+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4566554443322 344556778898887531 111232222222222 2579999987543 334455
Q ss_pred HHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhH
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNE 192 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~ 192 (301)
+.+.+ .++++++++.... .. ..+..+.......+..+++.|.+.....++|+++.+... ..-
T Consensus 80 ~~~~~---~~iPvV~~~~~~~----~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g 147 (305)
T 3g1w_A 80 NKAVD---AGIPIVLFDSGAP----DS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTG 147 (305)
T ss_dssp HHHHH---TTCCEEEESSCCT----TS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHH
T ss_pred HHHHH---CCCcEEEECCCCC----CC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHH
Confidence 55554 4688999987542 11 012222221122344455666554223468999987643 234
Q ss_pred HHHHHHhCCCeeEEEeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022176 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (301)
Q Consensus 193 L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~T 264 (301)
+.+.|+++|..+....++.. ....+ + ++....++++|+..+-..+-.+++.+.+.+. .++.+++++..-
T Consensus 148 f~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~ 224 (305)
T 3g1w_A 148 FKETLEAEFPAIEVIAVEDG---RGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDK 224 (305)
T ss_dssp HHHHHHHHCTTEEEEEEEEC---TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCH
T ss_pred HHHHHHhhCCCCEEEEEecC---CCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCH
Confidence 67778888877766555432 22222 1 1222247899999988888888887776653 367888887643
Q ss_pred --HHHHHH
Q 022176 265 --ASAAKR 270 (301)
Q Consensus 265 --a~al~~ 270 (301)
...+..
T Consensus 225 ~~~~~~~~ 232 (305)
T 3g1w_A 225 GTLDLVDE 232 (305)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 444444
No 21
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.89 E-value=0.21 Score=44.59 Aligned_cols=201 Identities=11% Similarity=0.046 Sum_probs=105.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCch----HHHHHHhcCCCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~----~l~~~l~~l~~~d~IiftS~-~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+++..+.. ..+.+ .++..+..-.++|.||++.. .....+++.+. ..++++++++...
T Consensus 25 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~---~~giPvV~~~~~~ 96 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQ---GSGIKLFIVNSPL 96 (350)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHT---TSCCEEEEEESCC
T ss_pred HHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHH---hCCCcEEEEcCCC
Confidence 345566778998876521 12222 23333311148999999862 34444444443 3578999998764
Q ss_pred HHHHHHHhhcc---cCC-CceeecCCC-CcHHHHHHHhccCC----CCC-CEEEEEcCCcC-------hhHHHHHHHhCC
Q 022176 139 ASIFEEVIQSS---KCS-LDVAFSPSK-ATGKILASELPKNG----KKK-CTVLYPASAKA-------SNEIEEGLSNRG 201 (301)
Q Consensus 139 a~~L~~~~~~~---~~G-~~~~~~p~~-~~~e~L~~~l~~~~----~~~-~~vLi~rg~~~-------~~~L~~~L~~~G 201 (301)
...-+..++.. ... +.. +..+. ..+..+++.|.+.. ... ++|+++.|... ..-+.+.|++.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~-V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~ 175 (350)
T 3h75_A 97 TLDQRELIGQSRQNYSDWIGS-MVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHP 175 (350)
T ss_dssp CTTTC------------CEEE-EECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCT
T ss_pred ChHHHhhhcCCchhccceeee-ecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCC
Confidence 32211000000 000 111 22222 22344555554432 112 58999988754 235778888888
Q ss_pred CeeEEEeeeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHH--HHHH
Q 022176 202 FEVVRLNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAK 269 (301)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~-------~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta--~al~ 269 (301)
. +....++. .....+. ++....++++|+..+-..+...++.+.+.+. .++.+++++.... +.+.
T Consensus 176 ~-~~~~~~~~---~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~l~~~~ 251 (350)
T 3h75_A 176 Q-VHLRQLVY---GEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALI 251 (350)
T ss_dssp T-EEEEEEEE---CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHHHHHHH
T ss_pred C-eEEEEEee---CCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHH
Confidence 6 33332322 2222221 2222246889998888888788887776653 2678888875433 3666
Q ss_pred HcCCCeeE
Q 022176 270 RLGLKNVY 277 (301)
Q Consensus 270 ~~G~~~~~ 277 (301)
.-.+..+.
T Consensus 252 ~~~lttv~ 259 (350)
T 3h75_A 252 DGKLSVLE 259 (350)
T ss_dssp HTSSCEEE
T ss_pred cCCeeEEE
Confidence 55555433
No 22
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.73 E-value=0.043 Score=47.94 Aligned_cols=181 Identities=10% Similarity=0.049 Sum_probs=103.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++..+..-. ......+.+.+ .-...|.||+.+...-...++.+.+ .+++++.+|... .
T Consensus 31 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~----~ 99 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEP---GEKYQSLIHLV-ETRRVDALIVAHTQPEDFRLQYLQK---QNFPFLALGRSH----L 99 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECT---TCCCHHHHHHH-HHTCCSEEEECSCCSSCHHHHHHHH---TTCCEEEESCCC----C
T ss_pred HHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHH-HcCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCCC----C
Confidence 45567778999998776432 22223343444 2257999999876433334454544 368899998752 1
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.. ++..+.......+...++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++......
T Consensus 100 ~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~ 171 (294)
T 3qk7_A 100 PK------PYAWFDFDNHAGASLAVKRLLEL--GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTR 171 (294)
T ss_dssp SS------CCEEEEECHHHHHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSH
T ss_pred CC------CCCEEEcChHHHHHHHHHHHHHC--CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCH
Confidence 12 33332221122344455666664 34689998877532 34667888888765432222221111
Q ss_pred CCcHHHHHH----cCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 217 HVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 217 ~~~~~~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
....+..+. ...+|+|+.++-..+-.+++.+.+.+. .++.++.++..
T Consensus 172 ~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 225 (294)
T 3qk7_A 172 PGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGL 225 (294)
T ss_dssp HHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCS
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 111111221 247899999998888778777776653 36777777654
No 23
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.56 E-value=0.074 Score=46.04 Aligned_cols=176 Identities=11% Similarity=0.044 Sum_probs=100.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
..+.+.++++|+++..+..-.- ......+.+.+ .-.+.|.||+.+...-.. . +.+....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~-~~~~~~~~iPvV~~~~~~---- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--E-YLNKASLTLPIILFNRLS---- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--H-HHHHCCCSSCEEEESCCC----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--H-HHHhccCCCCEEEECCCC----
Confidence 3455677788998876533211 11111111112 135799999987654431 1 112223579999999742
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
- ++..+.......+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++..
T Consensus 102 --~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~--- 168 (289)
T 3g85_A 102 --N------KYSSVNVDNYKMGEKASLLFAKK--RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAA--- 168 (289)
T ss_dssp --S------SSEEEEECHHHHHHHHHHHHHHT--TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEEC---
T ss_pred --C------CCCEEEeCHHHHHHHHHHHHHHc--CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheecc---
Confidence 1 33322222223345566777665 34689988876532 3467788899876543223221
Q ss_pred CCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEEC
Q 022176 216 HHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (301)
Q Consensus 216 ~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG 261 (301)
....+ +.... + ..+|+|+.++-..+..+++.+.+.+. .++.+++++
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 169 ENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp CSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 22222 12222 2 36899999999888888888877653 367788887
No 24
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=95.52 E-value=0.027 Score=50.09 Aligned_cols=178 Identities=15% Similarity=0.117 Sum_probs=102.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCch-HHHHHHhcCCCccEEEE----eC----------
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIII----TS---------- 110 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~-~l~~~l~~l~~~d~Iif----tS---------- 110 (301)
+.+.||+|++...........+.|.+.|+++.....-+........ ..++..+.+.++|.|+. ..
T Consensus 3 ~~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 3 AMLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 4577899999987777788899999999998765321111000000 00011123467888876 21
Q ss_pred hHH--H-HHHHHHHHHcCCCCceEEEEchhhHH---HHHHHhhcccCCCceeecCCCCcHHHHHHHh-------------
Q 022176 111 PEA--G-SVFLEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASEL------------- 171 (301)
Q Consensus 111 ~~a--v-~~f~~~l~~~~~~~~~i~avG~~Ta~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l------------- 171 (301)
..- + ..+++. .++.+++++|-..-. ++.+. |+.+.-.|... .-.++..+
T Consensus 83 ~~~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~~-~v~~~r~~~~~~g~~~~~~~~ 150 (300)
T 2rir_A 83 NEEVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFERD-DIAIYNSIPTVEGTIMLAIQH 150 (300)
T ss_dssp SSCEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGSH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCCC-ceEEEcCccHHHHHHHHHHHh
Confidence 111 1 222322 245566668766544 56666 99886666532 11222211
Q ss_pred ccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC-----------cHHHHHHcCCCCEEEEEChH
Q 022176 172 PKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------DQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 172 ~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------~~~~~~~~~~~d~I~ftS~s 238 (301)
......+++++++........+...|...|++| .+|++.+.... ...+.+.+.+.|+|+.+.|.
T Consensus 151 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANV---KVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp CSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred cCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 112236889999998877888999999999865 45554321100 01122235689999999885
No 25
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.39 E-value=0.055 Score=46.90 Aligned_cols=179 Identities=6% Similarity=0.005 Sum_probs=102.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~--~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+..- .+.+...+.++ .-.++|.||+.+...-...++.+.+ .+++++.+|......
T Consensus 34 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~~ 105 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHE---QNFPFVLIGKPYDRK 105 (292)
T ss_dssp HHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHH---TTCCEEEESCCSSCT
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHH---CCCCEEEECCCCCCC
Confidence 4556777899987754321 11122122222 2368999999776544445555554 368899998653110
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
. ++..+.......+...++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++..
T Consensus 106 ---~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~-- 172 (292)
T 3k4h_A 106 ---D------EITYVDNDNYTAAREVAEYLISL--GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHF-- 172 (292)
T ss_dssp ---T------TSCEEECCHHHHHHHHHHHHHHT--TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEEC--
T ss_pred ---C------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEec--
Confidence 0 12221111112344566667664 34689999887542 3467788888876543222221
Q ss_pred CCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
....+ +.... + ..+|+|+.++-..+..+++.+.+.+. .++.+++++..-
T Consensus 173 -~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 173 -DFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp -CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred -CCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 22221 11222 2 37899999998888888888876653 367788887643
No 26
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=95.19 E-value=0.06 Score=46.18 Aligned_cols=176 Identities=10% Similarity=0.015 Sum_probs=97.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-...++.+.+ .++++++++....
T Consensus 24 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGYS-----DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEA---SNTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEEC-----TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHH---HTCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEeeccC--
Confidence 445667788987754321 1222222222222 367899998765322334444544 3678898886431
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +..+. ..+..+++.|.+. ..++|+++.+... ..-+.+.|+++|..+....++..
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 161 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE- 161 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSS-
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeC-
Confidence 12 3322 22222 2244456666654 3468999887643 23466788889876543333321
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
+...+ +..+. + ..+|+|+.++-..+..+++.+.+.+. .++.+++++..
T Consensus 162 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 219 (275)
T 3d8u_A 162 --APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGS 219 (275)
T ss_dssp --CCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCCc
Confidence 22222 11222 2 35899999998888888887776542 36778888654
No 27
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.15 E-value=0.14 Score=44.17 Aligned_cols=182 Identities=11% Similarity=0.067 Sum_probs=101.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~-----av~~f~~~l~~~~~~~~~i~avG 135 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.... .....++.+.+ .+++++.++
T Consensus 35 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~---~~iPvV~~~ 106 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLTST-----NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK---NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH---TTCCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh---cCCCEEEEe
Confidence 3455677789998875432 1222222222222 2689999997653 22334455544 478899998
Q ss_pred hhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEee
Q 022176 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~v 209 (301)
.... .. ++..+.......+..+++.|.+.. .++|+++.+... ..-+.+.|+++|..+....+
T Consensus 107 ~~~~----~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~ 174 (298)
T 3tb6_A 107 ASYA----EL------AAPSFTLDDVKGGMMAAEHLLSLG--HTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMI 174 (298)
T ss_dssp SCCT----TC------SSCEEEECHHHHHHHHHHHHHHTT--CCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGE
T ss_pred cCcC----CC------CCCEEEeCcHHHHHHHHHHHHHCC--CCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceE
Confidence 6531 11 332222222233455666676653 467888876554 23467888899876543222
Q ss_pred eee--eeCCCC-cH---HHHHHcCC--CCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 210 YTT--EPVHHV-DQ---TVLKQALS--IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 210 Y~~--~~~~~~-~~---~~~~~~~~--~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
+.. ...... .. ++++...+ +|+|+..+-..+-.+++.+.+.+. .++.+++++...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 240 (298)
T 3tb6_A 175 VTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYDDSH 240 (298)
T ss_dssp EEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCCT
T ss_pred EEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecCCcH
Confidence 221 111110 11 12222345 899999999888888888877653 367777776543
No 28
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=95.04 E-value=1.4 Score=37.40 Aligned_cols=129 Identities=12% Similarity=0.137 Sum_probs=88.7
Q ss_pred CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 128 ~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
+..++.-.-.|++.|++.+ ++++..+ +.++-+++..|......+.+|.++.-...-..+
T Consensus 63 ~~dVIISRGgta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~-------------- 121 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPAL-------------- 121 (225)
T ss_dssp CCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHH--------------
T ss_pred CCeEEEeCChHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHH--------------
Confidence 3556666667899999875 7776555 456788888887665445677666443321111
Q ss_pred eeeeeeeCCCCcHHHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHH
Q 022176 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (301)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ 286 (301)
..+.+.+ -++....+.|+..++..++.+.+. ++.++.=|..+.+.++++|++.+.+- +.++
T Consensus 122 ------------~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~---G~~vVVG~~~~~~~A~~~Gl~~vlI~---s~eS 183 (225)
T 2pju_A 122 ------------VAFQKTFNLRLDQRSYITEEDARGQINELKAN---GTEAVVGAGLITDLAEEAGMTGIFIY---SAAT 183 (225)
T ss_dssp ------------HHHHHHHTCCEEEEEESSHHHHHHHHHHHHHT---TCCEEEESHHHHHHHHHTTSEEEESS---CHHH
T ss_pred ------------HHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCCEEECCHHHHHHHHHcCCcEEEEC---CHHH
Confidence 1122222 356677888888888888887764 46777678899999999999986653 4799
Q ss_pred HHHHHHHHH
Q 022176 287 WVDSILEAL 295 (301)
Q Consensus 287 ll~ai~~~~ 295 (301)
+-+++.+++
T Consensus 184 I~~Ai~eA~ 192 (225)
T 2pju_A 184 VRQAFSDAL 192 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888875
No 29
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=95.03 E-value=0.1 Score=45.50 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=109.0
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHH
Q 022176 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLE 119 (301)
Q Consensus 51 ~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~ 119 (301)
.+|.+.-+...+ ..+.+.++++|+++.....-. ..+.+...+.++. -.+.|.||+.... +....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPG---ANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSS---SCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCC---cCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 455555444322 334556778898887544210 0122222222322 2579999987543 3355555
Q ss_pred HHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hh
Q 022176 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SN 191 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~ 191 (301)
.+.+ .++++++++......-... .+.. +..+. ..+..+++.|.+.....++|+++.+... ..
T Consensus 81 ~~~~---~giPvV~~~~~~~~~~~~~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 81 RANK---LNIPVIAVDTRPKDKTKNP------YLVF-LGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp HHHH---HTCCEEEESCCCSCTTTSC------CSCE-EECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHH---CCCCEEEEcCCCccccccC------cceE-EccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 5554 3678898886542100001 2222 12222 2344455666655423578999987754 24
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC----CCceEEEE
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ----WSNSVACI 260 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~----~~~~i~aI 260 (301)
-+.+.|++.|+++.... .....+ . ++....++|+|+..+-..+...++.+.+.+. .++.++.+
T Consensus 151 Gf~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~ 224 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD------VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSF 224 (297)
T ss_dssp HHHHHHHHTTCEEEEEE------CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEE
T ss_pred HHHHHHHhcCCeEEEee------cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEe
Confidence 57788889998775432 112221 1 1222357899999998888888888876653 37888888
Q ss_pred CHHHH
Q 022176 261 GETTA 265 (301)
Q Consensus 261 G~~Ta 265 (301)
+..-.
T Consensus 225 D~~~~ 229 (297)
T 3rot_A 225 DKTPN 229 (297)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 66433
No 30
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.96 E-value=0.16 Score=44.12 Aligned_cols=176 Identities=7% Similarity=0.011 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-...++.+.+ .++++++++....
T Consensus 37 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSNS-----DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR---SPVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH---SSSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEccccC--
Confidence 445567789998764321 1232222222222 267999999764322333444443 4688999987532
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCc-C-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. ++..+ ..+. ..+...++.|.+. ..++|+++.+.. . ..-+.+.|++.|..+....++..
T Consensus 107 --~~------~~~~V-~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 175 (289)
T 2fep_A 107 --QE------ETPSV-AIDYEQAIYDAVKLLVDK--GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEG 175 (289)
T ss_dssp --TC------CSCEE-ECCHHHHHHHHHHHHHHT--TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred --CC------CCCEE-EECcHHHHHHHHHHHHHC--CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeC
Confidence 12 33222 2222 2344456666664 347899988765 3 23467888899876543222221
Q ss_pred eeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
+...+ +..+. + ..+|+|+..+-..+..+++.+.+.+. .++.++.++..
T Consensus 176 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~ 233 (289)
T 2fep_A 176 ---DYTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNT 233 (289)
T ss_dssp ---CSCHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 22221 12222 2 36899999998877777777766542 36677777653
No 31
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.96 E-value=0.2 Score=43.80 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=101.4
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~-f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|+++..+.. . .+.+...+.++. -.+.|.||+.+...-.. .++.+.+ +++++.+|....
T Consensus 35 ~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~ 105 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVP 105 (303)
T ss_dssp HHHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCT
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCC
Confidence 3455677789999875432 1 122222222222 36899999987654333 4444433 688999987642
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. .. ..+.......+...++.|.+. ..++|+++.+... ..-+.+.|++.|..+....++..
T Consensus 106 ~---~~--------~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 172 (303)
T 3kke_A 106 G---RV--------GSVILDDQKGGGIATEHLITL--GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDA 172 (303)
T ss_dssp T---CC--------CEEEECHHHHHHHHHHHHHHT--TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred C---CC--------CEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEec
Confidence 2 11 111111112344455666664 3468999987654 23466788899977643222221
Q ss_pred eeCCCCcH---H-HHHH-----c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 213 EPVHHVDQ---T-VLKQ-----A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~---~-~~~~-----~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
....+ + +.+. + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++..-
T Consensus 173 ---~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 236 (303)
T 3kke_A 173 ---GWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTTW 236 (303)
T ss_dssp ---CSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred ---CCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEcChh
Confidence 11111 1 2222 2 36899999998888888888777653 367788887653
No 32
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=94.68 E-value=0.1 Score=44.54 Aligned_cols=176 Identities=9% Similarity=0.043 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+... ....++.+.+ .+++++++|....
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASS-----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD---KGLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH---TTCCEEEESSCCC
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH---cCCCEEEEccCCC
Confidence 3455677788998876532 1222222222222 25799999976541 1334444544 4688999986542
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. ++..+.......+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+.. ++.
T Consensus 94 ----~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~- 158 (272)
T 3o74_A 94 ----PA------HFCSVISDDRDASRQLAASLLSS--APRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQG- 158 (272)
T ss_dssp ----TT------TCEEEEECHHHHHHHHHHHHHTT--CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEE-
T ss_pred ----cc------ccCEEEEchHHHHHHHHHHHHHC--CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eec-
Confidence 12 33222221122344566667664 34789999876542 3466778888865422 221
Q ss_pred eeCCCCcH---H----HHHHcC-CCCEEEEEChHHHHHHHHhhhcccC--CCceEEEECHH
Q 022176 213 EPVHHVDQ---T----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~---~----~~~~~~-~~d~I~ftS~sav~~~~~~l~~~~~--~~~~i~aIG~~ 263 (301)
.....+ + ++.... .+++|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 159 --~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~~ 217 (272)
T 3o74_A 159 --EAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGDN 217 (272)
T ss_dssp --SSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEESCC
T ss_pred --CCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeCCh
Confidence 122221 1 222224 6999999998888888888776653 46778888754
No 33
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=94.44 E-value=0.1 Score=44.92 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=99.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++..+..- .+....+.++. + .-.++|.|| .+...-...++ . .+++++.+|.... .
T Consensus 26 gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~-l-~~~~vdgiI-~~~~~~~~~~~---~---~~iPvV~~~~~~~---~ 91 (280)
T 3gyb_A 26 SLSDVLTPKGYRLSVIDSL--TSQAGTDPITS-A-LSMRPDGII-IAQDIPDFTVP---D---SLPPFVIAGTRIT---Q 91 (280)
T ss_dssp HHHHHHGGGTCEEEEECSS--SSCSSSCHHHH-H-HTTCCSEEE-EESCC--------------CCCEEEESCCCS---S
T ss_pred HHHHHHHHCCCEEEEEeCC--CchHHHHHHHH-H-HhCCCCEEE-ecCCCChhhHh---h---cCCCEEEECCCCC---C
Confidence 4455677889998876654 22112233333 3 236899999 54433332222 2 5789999987541 1
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 218 (301)
.. ++..+.......+..+++.|.+. ..++|+++.+... ..-+.+.|++.|..+.....+ ....
T Consensus 92 ~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~----~~~~ 159 (280)
T 3gyb_A 92 AS------THDSVANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL----GPAV 159 (280)
T ss_dssp SC------STTEEEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC----SCCC
T ss_pred CC------CCCEEEechHHHHHHHHHHHHHC--CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccccc----CCCC
Confidence 11 33322222223345566667664 3468999998764 345677888999876533221 1222
Q ss_pred cH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 219 DQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 219 ~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.+ + ++.....+|+|+.++-..+..+++.+.+.+. .++.+++++..-
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 160 EHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEECCch
Confidence 21 1 2222257899999998888888888776653 367888887544
No 34
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.44 E-value=0.72 Score=36.98 Aligned_cols=114 Identities=16% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHH
Q 022176 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWV 244 (301)
Q Consensus 177 ~~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-----sav~~~~ 244 (301)
...+|++..... +...+...|+..|++|..+-... ..+++.+.. .++|+|.+++. ..++.+.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~------p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ------TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC------CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 345777654332 34678889999999886555431 223333332 58899988885 3456666
Q ss_pred HhhhcccCCCceEEEECHHHHH---HHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 245 NLISDTEQWSNSVACIGETTAS---AAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 245 ~~l~~~~~~~~~i~aIG~~Ta~---al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+.+++.+..++++++-|....+ .+++.|...++ ....+.+..++.+.+.++.
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~-~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIF-LPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEE-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEE-CCCCCHHHHHHHHHHHHHH
Confidence 6666543335788887854432 37789997655 4445667777777777643
No 35
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.28 E-value=0.17 Score=44.97 Aligned_cols=176 Identities=9% Similarity=0.010 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+.. ....+.+.+.+ .+++++++|.....
T Consensus 84 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA---HSQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHH---CSSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHc---CCCCEEEEcCCCCC
Confidence 445667789998875441 1222221222222 2579999997643 22334444444 35788888865321
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. ++.. +..+. ..+...++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++..
T Consensus 156 ----~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 222 (338)
T 3dbi_A 156 ----N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 222 (338)
T ss_dssp ----S------GGGE-ECBCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEChHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeC
Confidence 1 2222 12222 2344455666654 3468999988643 23467788899976543222221
Q ss_pred eeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 EPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 ~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
....+ + +++...++|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 223 ---~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vvg~D~~ 280 (338)
T 3dbi_A 223 ---KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDI 280 (338)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred ---CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 22221 1 2222247899999998888777777776653 36778777643
No 36
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=94.28 E-value=0.25 Score=43.62 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=116.4
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCC----CchHHHHHHhcCCCccEEEEe--------------
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP----DTDRLSSVLNADTIFDWIIIT-------------- 109 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~----d~~~l~~~l~~l~~~d~Iift-------------- 109 (301)
+.||+|++.........+.+.|++.|+++.....-...... ..+++ .+.+.++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRID---EVDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGG---GCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccch---HHHHhcCCEEEeccccccCCceeeccc
Confidence 57899999987777788899999999998765321110000 00111 1235678888763
Q ss_pred --ChHHH-HHHHHHHHHcCCCCceEEEEchhhH---HHHHHHhhcccCCCceeecCC-----CCcH----HHHHHHh-c-
Q 022176 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATG----KILASEL-P- 172 (301)
Q Consensus 110 --S~~av-~~f~~~l~~~~~~~~~i~avG~~Ta---~~L~~~~~~~~~G~~~~~~p~-----~~~~----e~L~~~l-~- 172 (301)
++.-+ ..+++ . .++.++++.|-..- +++++. |+.+.-.|. ..++ |..+..+ .
T Consensus 80 ~~~~~~~~~~~l~---~--~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIE---K--TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHH---T--SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHH---h--CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11111 22222 2 24567777886654 457777 998866653 2222 2222212 1
Q ss_pred -cCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC--------C---cHHHHHHcCCCCEEEEEChHHH
Q 022176 173 -KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 173 -~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~~~~~d~I~ftS~sav 240 (301)
.....+++++++........+...|...|.+| .+|++.+... . ...+.+.+.+.|+|+.+.|...
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~ 225 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALV 225 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCC
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHH
Confidence 12236889999998887888999999999865 4554432110 0 0112223568999999988532
Q ss_pred --HHHHHhhhcccCCCceEEEEC--H--HHHHHHHHcCCCe
Q 022176 241 --RSWVNLISDTEQWSNSVACIG--E--TTASAAKRLGLKN 275 (301)
Q Consensus 241 --~~~~~~l~~~~~~~~~i~aIG--~--~Ta~al~~~G~~~ 275 (301)
+..++.++. +..++-++ + ...+.+++.|+..
T Consensus 226 i~~~~l~~mk~----~~~lin~ar~~~~~~~~~a~~~Gv~~ 262 (293)
T 3d4o_A 226 VTANVLAEMPS----HTFVIDLASKPGGTDFRYAEKRGIKA 262 (293)
T ss_dssp BCHHHHHHSCT----TCEEEECSSTTCSBCHHHHHHHTCEE
T ss_pred hCHHHHHhcCC----CCEEEEecCCCCCCCHHHHHHCCCEE
Confidence 123333332 23333333 1 1125667778754
No 37
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.22 E-value=0.32 Score=42.11 Aligned_cols=176 Identities=10% Similarity=0.037 Sum_probs=101.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++.....-. ..+.....+.+ .-.+.|.||+.+...-...++.+. .+++++.+|....
T Consensus 32 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~~----~~iPvV~i~~~~~---- 99 (289)
T 3k9c_A 32 QIYAAATRRGYDVMLSAVAP---SRAEKVAVQAL-MRERCEAAILLGTRFDTDELGALA----DRVPALVVARASG---- 99 (289)
T ss_dssp HHHHHHHHTTCEEEEEEEBT---TBCHHHHHHHH-TTTTEEEEEEETCCCCHHHHHHHH----TTSCEEEESSCCS----
T ss_pred HHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHH-HhCCCCEEEEECCCCCHHHHHHHH----cCCCEEEEcCCCC----
Confidence 45567778999887654321 11111112222 236799999987543333444443 2789999997542
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeeeCCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (301)
.. ++..+.......+...++.|.+. ..++|.++.+... ..-+.+.|++.|..+.....+ ...
T Consensus 100 ~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~----~~~ 167 (289)
T 3k9c_A 100 LP------GVGAVRGDDVAGITLAVDHLTEL--GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVT----GGT 167 (289)
T ss_dssp ST------TSEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEEC----CCS
T ss_pred CC------CCCEEEeChHHHHHHHHHHHHHC--CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEE----CCC
Confidence 12 44332222222344456666664 3468999988653 235778889999875442222 122
Q ss_pred CcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 218 VDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 218 ~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
..+ +..+. + ..+|+|+..+-..+-..++.+.+.+. .++.++.++..
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 168 TETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCH
Confidence 222 12222 2 47899999998888888887776653 36777777654
No 38
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=94.21 E-value=0.83 Score=39.27 Aligned_cols=174 Identities=12% Similarity=0.019 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -.++|.||+.+...-...++.+. .++++++++....
T Consensus 29 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~-- 97 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCNT-----ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDP-- 97 (285)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccC--
Confidence 345567788998765321 1232222222222 36799999976433233344443 4688999986531
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +..+. ..+..+++.|.+. ..++|.++.+.... .-+.+.|++.|..+. ++...
T Consensus 98 --~~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~ 163 (285)
T 3c3k_A 98 --LS------TVSS-VSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYA 163 (285)
T ss_dssp --TS------SSCE-EECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecC
Confidence 12 3322 12222 2234455666654 34689998876532 346677888887765 22221
Q ss_pred eCCCCcHHHHHH---c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 214 PVHHVDQTVLKQ---A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 214 ~~~~~~~~~~~~---~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
.......+..+. + .++|+|+..+-..+..+++.+.+.+. .++.++.++.
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vvg~d~ 221 (285)
T 3c3k_A 164 ENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSIPQDVAVVGFDG 221 (285)
T ss_dssp SSSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 111111122222 2 36899999988877777777766542 2566666654
No 39
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=94.13 E-value=0.93 Score=39.38 Aligned_cols=213 Identities=12% Similarity=0.053 Sum_probs=107.7
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+... ....++.+.+ .++++++++.....
T Consensus 24 i~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 95 (306)
T 2vk2_A 24 AKSEAEKRGITLKIADG-----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD---AEIPVFLLDRSIDV 95 (306)
T ss_dssp HHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHH---TTCCEEEESSCCCC
T ss_pred HHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHH---CCCCEEEecCCCCC
Confidence 45567788988765321 1232222222222 15799999876542 2334454544 36889998864311
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC-CCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~-~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (301)
.-... .+.. +..+. ..+..+++.|.+... +.++|+++.+.... .-+.+.|++.|. +..+.++.
T Consensus 96 ~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~ 167 (306)
T 2vk2_A 96 KDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQS 167 (306)
T ss_dssp SCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEE
T ss_pred CCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEecc
Confidence 00000 1222 22222 223445556655321 13689999876432 236667777775 32222221
Q ss_pred eeeCCCCcH-------HHHHHc---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHH--HHHHHcCCCee
Q 022176 212 TEPVHHVDQ-------TVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNV 276 (301)
Q Consensus 212 ~~~~~~~~~-------~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta--~al~~~G~~~~ 276 (301)
.....+ .+++.. ..+|+|+..+-..+-.+++.+.+.+. .++.++.++.... ..+..-.+..+
T Consensus 168 ---~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~~~p~lttv 244 (306)
T 2vk2_A 168 ---GDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 244 (306)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHTTCCCEE
T ss_pred ---CCCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCCHHHHHHHHcCCceEE
Confidence 122221 122222 36899999998877777777776543 3667777754332 24444445444
Q ss_pred EecCCCCHHHHHHHHHHHHH
Q 022176 277 YYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 277 ~v~~~ps~e~ll~ai~~~~~ 296 (301)
..+..---...++.+.+.++
T Consensus 245 ~~~~~~~g~~a~~~l~~~i~ 264 (306)
T 2vk2_A 245 VELTPNMAGPAFDALEKYKK 264 (306)
T ss_dssp EECCSCCHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHc
Confidence 43333222344445555443
No 40
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=94.11 E-value=0.65 Score=41.51 Aligned_cols=176 Identities=9% Similarity=0.041 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -...|.||+.....-...++.+.+ .+++++++|....
T Consensus 91 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~-- 160 (355)
T 3e3m_A 91 SLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQR---ASIPIVEIWEKPA-- 160 (355)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHH---CCSCEEEESSCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEECCccC--
Confidence 455667788998865421 1222222222222 257999999865433344454544 4678888875321
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh--------hHHHHHHHhCCCeeEE-Eeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVR-LNTYT 211 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~--------~~L~~~L~~~G~~v~~-~~vY~ 211 (301)
.. .... +..+. ..+...++.|.+.. .++|.++.+.... .-+.+.|+++|..+.. +.++.
T Consensus 161 --~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 229 (355)
T 3e3m_A 161 --HP------IGHT-VGFSNERAAYDMTNALLARG--FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGA 229 (355)
T ss_dssp --SC------SSEE-EECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESC
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEec
Confidence 11 2211 22222 23444566676653 4689888775421 3467788899987653 22221
Q ss_pred eeeCCCCcH-------HHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 212 TEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~-------~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.....+ .+++....+|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 230 ---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~ 288 (355)
T 3e3m_A 230 ---PPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFGNF 288 (355)
T ss_dssp ---SSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSSCC
T ss_pred ---CCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCh
Confidence 111111 12222357899999998887777777776553 36677776654
No 41
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=94.09 E-value=0.36 Score=41.39 Aligned_cols=176 Identities=10% Similarity=0.048 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+... ...++.+.+ .+++++.+|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~---~~iPvV~i~~~~~-- 96 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-----NADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILH---QQMPVVSVDREMD-- 96 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHT---TSSCEEEESCCCT--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHH---CCCCEEEEecccC--
Confidence 455567788998876432 1222222222222 36899999998776 555555544 4788999987542
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-hhHHH---HHHHhCCCeeEEEeeeeeeeCCC
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIE---EGLSNRGFEVVRLNTYTTEPVHH 217 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-~~~L~---~~L~~~G~~v~~~~vY~~~~~~~ 217 (301)
.. ++..+.......+...++.|.+. ..++|+++.+... ..... +++++.=.+ ...+.......
T Consensus 97 --~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~---~~~~~~~~~~~ 163 (276)
T 3jy6_A 97 --AC------PWPQVVTDNFEAAKAATTAFRQQ--GYQHVVVLTSELELSRTRQERYRGILAAAQD---VDVLEVSESSY 163 (276)
T ss_dssp --TC------SSCEEECCHHHHHHHHHHHHHTT--TCCEEEEEEECSTTCHHHHHHHHHHHTTCSE---EEEEEECSSSC
T ss_pred --CC------CCCEEEEChHHHHHHHHHHHHHc--CCCeEEEEecCCCCCchHHHHHHHHHHHHHh---CCcEEEecccc
Confidence 12 33322222223345566667664 3468999988765 22222 222221111 11111111111
Q ss_pred Cc----HHHHHHc---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 218 VD----QTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 218 ~~----~~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.. ..+.+.+ ..+|+|+.++-..+..+++.+.+.+. .++.+++++..
T Consensus 164 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~ 219 (276)
T 3jy6_A 164 NHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFADT 219 (276)
T ss_dssp CHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBCCC
T ss_pred CCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCCCCCCcEEEEEECCh
Confidence 11 1122222 57899999999888888888777653 35667777653
No 42
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=94.06 E-value=0.35 Score=41.78 Aligned_cols=179 Identities=6% Similarity=0.003 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
.+.+.++++|+++..... ...++ ...+.+.+ .-.++|.||+.+...-...++.+.+ .+++++.++....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 98 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLI-RSGNVDGFVLSSINYNDPRVQFLLK---QKFPFVAFGRSNP--- 98 (287)
T ss_dssp HHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHH-HTTCCSEEEECSCCTTCHHHHHHHH---TTCCEEEESCCST---
T ss_pred HHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHH-HcCCCCEEEEeecCCCcHHHHHHHh---cCCCEEEECCcCC---
Confidence 445567789998876442 11111 12222233 2367999999764322233444544 3688999987532
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
.. ++..+.......+...++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++..
T Consensus 99 -~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--- 166 (287)
T 3bbl_A 99 -DW------DFAWVDIDGTAGTRQAVEYLIGR--GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRG--- 166 (287)
T ss_dssp -TC------CCCEEEECHHHHHHHHHHHHHHH--TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEEC---
T ss_pred -CC------CCCEEEeccHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC---
Confidence 12 33222221112344455666654 24689998876432 2467788888876542212221
Q ss_pred CCCcH---HHHHH-cC-----CCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 216 HHVDQ---TVLKQ-AL-----SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 216 ~~~~~---~~~~~-~~-----~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
+...+ +..+. +. .+|+|+..+-..+..+++.+.+.+. .++.++.++...
T Consensus 167 ~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 167 EGTFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp CSSHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred CCCHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 22221 11111 23 6899999988877777777776542 367788776543
No 43
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=94.03 E-value=0.26 Score=42.67 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHH---HHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~---~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+++..... . .+.+...+ .++. -.++|.||+.+...-...++.+.+ .++++++++...
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~ 100 (290)
T 2rgy_A 29 QTDLELRAVHRHVVVATG---C--GESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDLDELHR---MHPKMVFLNRAF 100 (290)
T ss_dssp HHHHHHHHTTCEEEEECC---C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHH---HCSSEEEESSCC
T ss_pred HHHHHHHHCCCEEEEEeC---C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHHHHHhh---cCCCEEEEcccc
Confidence 345567788998765432 1 12111112 2222 257999998764322333444444 367899998653
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 210 (301)
.. . ++.. +..+. ..+..+++.|.+. ..++|.++.+... ..-+.+.|++.|..+....++
T Consensus 101 ~~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~ 167 (290)
T 2rgy_A 101 DA----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI 167 (290)
T ss_dssp TT----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE
T ss_pred CC----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE
Confidence 21 1 2221 12222 2244455666664 3468999988643 124667788888765432222
Q ss_pred eeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 211 TTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 211 ~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.. +...+ + +++....+|+|+..+-..+..+++.+.+.+. .++.++.++..
T Consensus 168 ~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~ 227 (290)
T 2rgy_A 168 ES---DFSPEGGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGISVPGDVSVIGYDDD 227 (290)
T ss_dssp EC---CSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred ec---CCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCCc
Confidence 21 22211 1 2222247899999988877777777766542 36677777553
No 44
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=93.93 E-value=0.34 Score=41.70 Aligned_cols=177 Identities=10% Similarity=0.004 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+...-...++.+.+. .++++++++.....
T Consensus 42 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~~- 113 (296)
T 3brq_A 42 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA--HSQPIMVLNRRLRK- 113 (296)
T ss_dssp HHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHT--CSSCEEEESCCCSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCCEEEEccccCC-
Confidence 445567788988764321 1222222222222 2579999987653222334444441 36789999864311
Q ss_pred HHHHhhcccCCCceeecCCCC-cHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
. ++.. +..+.+ .+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+....++..
T Consensus 114 ---~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 180 (296)
T 3brq_A 114 ---N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG- 180 (296)
T ss_dssp ---S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC-
T ss_pred ---C------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeC-
Confidence 1 2211 122222 234455666654 34789999887432 3466788888876543222221
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
....+ ...+. + ..+|+|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 181 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 238 (296)
T 3brq_A 181 --KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDI 238 (296)
T ss_dssp --CSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 22221 12222 2 36899999998878788777766542 35677777654
No 45
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.83 E-value=0.18 Score=44.09 Aligned_cols=178 Identities=9% Similarity=-0.033 Sum_probs=100.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~--~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+..- .+.+...+.++ .-.+.|.||+.+...-...++.+.+ .+++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNE---FKVPYLIVGKSL--- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHH---TTCCEEEESCCC---
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHH---cCCCEEEECCCC---
Confidence 3455677889988764321 11111122222 2368999999865433334555544 468899998764
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
... ++..+.......+...++.|.+.. .++|+++.+.... .-+.+.|++.|..+.. ++....
T Consensus 117 -~~~------~~~~V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~~ 185 (305)
T 3huu_A 117 -NYE------NIIHIDNDNIDAAYQLTQYLYHLG--HRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKSM 185 (305)
T ss_dssp -SST------TCCEEECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECSH
T ss_pred -ccc------CCcEEEeCHHHHHHHHHHHHHHCC--CCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecCc
Confidence 111 333222211223445566676653 4689998876542 3466788899987765 222211
Q ss_pred CCCCc---HHH-HHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVD---QTV-LKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~---~~~-~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.. .. .++ ++....+|+|+..+-..+-..++.+.+.+. .++.++.++..-
T Consensus 186 ~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~di~vig~D~~~ 241 (305)
T 3huu_A 186 ND-LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSF 241 (305)
T ss_dssp HH-HHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCSH
T ss_pred HH-HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEEECCcc
Confidence 11 11 112 332357899999998888878887776653 367788887643
No 46
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.80 E-value=0.38 Score=41.79 Aligned_cols=177 Identities=8% Similarity=0.049 Sum_probs=98.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~--~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
..+.+.++++|++++.+..- .+.+...+.++ .-...|.||+.....-...++.+.+ .+++++++|.....
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMIKQRMVDAFILLYSKENDPIKQMLID---ESMPFIVIGKPTSD 103 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHH---TTCCEEEESCCCSS
T ss_pred HHHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHh---CCCCEEEECCCCcc
Confidence 34556777889988754321 11111122222 2368999999765433344554544 46889999865321
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
. .. ++.. +..+. ..+...++.|.+. ..++|+++.+.... .-+.+.|+++|..+. ++..
T Consensus 104 ~--~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~~~ 169 (295)
T 3hcw_A 104 I--DH------QFTH-IDNDNILASENLTRHVIEQ--GVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ---IIET 169 (295)
T ss_dssp G--GG------GSCE-EEECHHHHHHHHHHHHHHH--CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE---EEEE
T ss_pred c--cC------CceE-EecCcHHHHHHHHHHHHHc--CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee---EEec
Confidence 1 00 1111 11121 2344455666654 34789999876442 346778889998765 2221
Q ss_pred eeCCCCcH-------HHHHHcC---CCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 213 EPVHHVDQ-------TVLKQAL---SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~-------~~~~~~~---~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
....+ ++++... .+++|+..+-..+-..++.+.+.+. .++.++.++..-
T Consensus 170 ---~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~ 231 (295)
T 3hcw_A 170 ---SNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFNDSY 231 (295)
T ss_dssp ---CSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECCSH
T ss_pred ---cCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeCChh
Confidence 22221 1222222 6889888888877777777776553 367777776543
No 47
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=93.80 E-value=0.16 Score=43.76 Aligned_cols=178 Identities=9% Similarity=0.001 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++.... ...+.+...+.++. -.++|.||+.+...-....+.+.+ ..++++++++....
T Consensus 28 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 98 (289)
T 1dbq_A 28 AVEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 98 (289)
T ss_dssp HHHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH--TTTSCEEEEECSSC--
T ss_pred HHHHHHHHcCCeEEEEc-----CCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh--ccCCCEEEEccCCC--
Confidence 34456677898876432 11232222222222 257999998765422223444433 24688999886431
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++...+..+. ..+..+++.|.+. ..++|+++.+... ..-+.+.|+++|..+....++.
T Consensus 99 --~~------~~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~-- 166 (289)
T 1dbq_A 99 --KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ-- 166 (289)
T ss_dssp --CS------SSCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCC--
T ss_pred --cc------CcCCEEEeCcHHHHHHHHHHHHHC--CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEe--
Confidence 11 2111122222 2344566666664 3468999987642 2347788888887653222221
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.+...+ ...+. + .++|+|+..+-..+..+++.+.+.+. .++.+++++..
T Consensus 167 -~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~ 225 (289)
T 1dbq_A 167 -GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 225 (289)
T ss_dssp -CCSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred -CCCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 122221 12222 2 36899999988877778777776542 35677777653
No 48
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=93.76 E-value=1.9 Score=37.17 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=96.3
Q ss_pred HHHHHHHhCCC-cEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~-~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+ ++.... ...+.+...+.++. -.++|.||+.... .....++.+.+ .++++++++...
T Consensus 23 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 94 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMND-----SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNKEP 94 (309)
T ss_dssp HHHHHHHTCTTEEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEec-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecCCC
Confidence 44566778897 655432 11232222222222 2579999997643 23444555543 468899998753
Q ss_pred HHH-HHHHhhcccCCCceeecCCC-CcHHHHHHHhcc----------CCCCCCEEEEEcCCcC-------hhHHHHHHHh
Q 022176 139 ASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPK----------NGKKKCTVLYPASAKA-------SNEIEEGLSN 199 (301)
Q Consensus 139 a~~-L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~----------~~~~~~~vLi~rg~~~-------~~~L~~~L~~ 199 (301)
... +... .++.. +..+. ..+..+++.|.+ .....++|+++.+... ..-+.+.|++
T Consensus 95 ~~~~~~~~-----~~~~~-V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 168 (309)
T 2fvy_A 95 SRKALDSY-----DKAYY-VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 168 (309)
T ss_dssp CHHHHHTC-----TTEEE-EECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHH
T ss_pred Cccccccc-----CccEE-EecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHh
Confidence 221 1111 01211 12222 223334455544 1112347888877643 2346788889
Q ss_pred CCCeeEEEeeeeeeeCCCCcH---HHHHH-c---C--CCCEEEEEChHHHHHHHHhhhcccCC-CceEEEECH
Q 022176 200 RGFEVVRLNTYTTEPVHHVDQ---TVLKQ-A---L--SIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGE 262 (301)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~---~~~~~-~---~--~~d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aIG~ 262 (301)
.|..+....++.. ....+ ...+. + . .+++|+..+-..+..+++.+.+.+ . ++.++.++.
T Consensus 169 ~g~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g-~~di~vig~d~ 237 (309)
T 2fvy_A 169 KGIKTEQLQLDTA---MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 237 (309)
T ss_dssp TTCCEEEEEEEEC---TTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT-CTTSCEECSBC
T ss_pred cCCceEEEEEecC---CCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcC-CCCceEEecCC
Confidence 9987765444322 22222 12222 2 2 589999998887777888777655 3 677777754
No 49
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=93.53 E-value=1.1 Score=38.01 Aligned_cols=174 Identities=13% Similarity=0.014 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHH-HHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~-~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.+.+ ...++ .+.+ .+++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~---~~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTD---HHIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHH---C-CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHc---CCCCEEEEeccCC
Confidence 4555677788998875322 1222222222222 2689999998733 22344 5544 4788999987653
Q ss_pred HHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
..- +. +. .....+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+.. ++..
T Consensus 98 ~~~--~V-----~~-----D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~ 161 (277)
T 3e61_A 98 EHN--GI-----ST-----NHFKGGQLQAEVVRKG--KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM--LEAT 161 (277)
T ss_dssp --------------------HHHHHHHHHHHHHHT--TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE--EEGG
T ss_pred CCC--eE-----Ee-----chHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--eecC
Confidence 221 10 11 1112345566667664 34689999876542 3467788888887765 2222
Q ss_pred eeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
........+.+.....+|+|+..+-..+..+++.+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~ 214 (277)
T 3e61_A 162 LLDNDKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYHFKVPAEIQIIGYDN 214 (277)
T ss_dssp GGGSHHHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCHHHHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCC
Confidence 1111111112222357999999998888888887776653 3566666654
No 50
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.35 E-value=0.19 Score=44.75 Aligned_cols=168 Identities=10% Similarity=0.005 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+..-. .+...+.++. -...|.||+.+. +......+++++.+|....
T Consensus 85 gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~---------~~~~~~~~iPvV~~~~~~~-- 147 (333)
T 3jvd_A 85 TIQQDLKAAGYQMLVAEANS------VQAQDVVMESLISIQAAGIIHVPV---------VGSIAPEGIPMVQLTRGEL-- 147 (333)
T ss_dssp HHHHHHHHHTCEEEEEECCS------HHHHHHHHHHHHHHTCSEEEECCC---------TTCCC-CCSCEEEECC-----
T ss_pred HHHHHHHHCCCEEEEECCCC------hHHHHHHHHHHHhCCCCEEEEcch---------HHHHhhCCCCEEEECccCC--
Confidence 34456677899887654322 1111122211 257999999887 2222235889999997542
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. ++..+.......+...++.|.+. ..++|.++.+.... .-+.+.|++.|.. +..+ .
T Consensus 148 --~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~-~-- 211 (333)
T 3jvd_A 148 --GP------GFPRVLCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGISHAASIYGAE---VTFH-F-- 211 (333)
T ss_dssp ---C------CSCEEEECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE---EEEE-E--
T ss_pred --CC------CCCEEEEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC---EEEe-c--
Confidence 12 44332222222345566677665 34789999887542 3466788899876 2111 0
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.....+ +.... + ..+|+|+..+-..+-..++.+.+.+. .++.++.++..-
T Consensus 212 ~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~~ 270 (333)
T 3jvd_A 212 GHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYDDPE 270 (333)
T ss_dssp CCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEESCCG
T ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECChH
Confidence 122221 11221 1 22899999998888788887776653 367788876544
No 51
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=93.29 E-value=0.43 Score=40.56 Aligned_cols=180 Identities=13% Similarity=0.073 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CC-ccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~-~d~IiftS~--~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
..+.+.++++|+++.....- ...+.+...+.++.+ .+ +|.||+... ......++.+.+ .+++++.+|..
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~---~~ipvV~~~~~ 93 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRA---RNIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSC
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHH---CCCcEEEEecC
Confidence 34556677889888755321 112222212222221 35 999999873 344555665655 36889999865
Q ss_pred hHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC--CCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~--~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~ 206 (301)
.. .. +....+..+. ..+..+++.|.+... ..++|+++.+.... .-+.+.|++. |..+..
T Consensus 94 ~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 163 (276)
T 3ksm_A 94 LA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA 163 (276)
T ss_dssp CS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE
Confidence 41 11 2212122222 234445556655421 34689999876432 3466777777 765541
Q ss_pred EeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
++ ......+ + ++....++|+|+.++-..+..+++.+.+.+. .++.+++++..
T Consensus 164 --~~---~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 164 --AP---YAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp --CC---BCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCC
T ss_pred --Ee---cCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcCCCCCeEEEEeCCC
Confidence 11 1122222 1 2222247899999998888888887776653 46788888654
No 52
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=93.20 E-value=0.5 Score=41.83 Aligned_cols=175 Identities=9% Similarity=0.050 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-...++.+.+ .+++++.+|....
T Consensus 84 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 153 (332)
T 2o20_A 84 GVDDIASMYKYNMILANS-----DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN---SRTPVVLVGTIDG-- 153 (332)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHH---HCCCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEccccC--
Confidence 344566788998765421 1222222222222 267999998764221223444433 3678999986531
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++.. +..+. ..+...++.|.+. ..++|.++.+.... .-+.+.|++.|..+....++..
T Consensus 154 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 221 (332)
T 2o20_A 154 --DK------EIPS-VNIDYHLAAYQSTKKLIDS--GNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG- 221 (332)
T ss_dssp --TS------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECS-
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC-
Confidence 12 3332 22222 2234455666664 34789999887432 3466788889876543222221
Q ss_pred eCCCCcH---HHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 214 PVHHVDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
+...+ +..+. + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++.
T Consensus 222 --~~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvig~D~ 276 (332)
T 2o20_A 222 --NYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGAN 276 (332)
T ss_dssp --CCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred --CCCHHHHHHHHHHHhccCCCEEEECChHHHHHHHHHHHHcCCCCccCEEEEEeCC
Confidence 22221 11111 1 27899999998877777777776542 3566776654
No 53
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=92.79 E-value=0.75 Score=35.49 Aligned_cols=61 Identities=7% Similarity=-0.044 Sum_probs=37.7
Q ss_pred CCCCEEEEEChHHHHHH--HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeeEecCCCCHHHHH
Q 022176 227 LSIPVVAVASPSAVRSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWV 288 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~--~~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll 288 (301)
.+.|+++.+.+....+. ...++... ...+++ +-++.-.+.+++.|...++.|+.-..+.|+
T Consensus 70 ~~ad~vi~~~~~~~~n~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~ 134 (140)
T 3fwz_A 70 ECAKWLILTIPNGYEAGEIVASARAKN-PDIEIIARAHYDDEVAYITERGANQVVMGEREIARTML 134 (140)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHH
T ss_pred ccCCEEEEECCChHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHHHHH
Confidence 57899998877655443 22333321 234444 458888999999999987765543333333
No 54
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=92.78 E-value=1.4 Score=37.83 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..+.. ..+.+...+.++. -.++|.||+.... .....++.+.+ .+++++++|...
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 99 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATS-----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK---AGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHH---TTCCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---cCCCEEEecCCC
Confidence 3455667788998876532 1222222222222 2679999997543 32244555544 368899998654
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC--C---CCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--G---KKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 205 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~--~---~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~ 205 (301)
... . ++..+.......+..+++.|.+. . ...++|+++.|.... .-+.+.|++. |+.+.
T Consensus 100 ~~~---~------~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 170 (293)
T 3l6u_A 100 RSD---A------VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIV 170 (293)
T ss_dssp CCT---T------CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCC---c------ceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEe
Confidence 210 1 22221111112234444555442 2 112389999876542 3566778888 87654
Q ss_pred EEeeeeeeeCCCCcHH---HHHH----cCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH
Q 022176 206 RLNTYTTEPVHHVDQT---VLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (301)
Q Consensus 206 ~~~vY~~~~~~~~~~~---~~~~----~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~ 263 (301)
.. + ......+. .... ..++|+|+.++-..+-.+++.+.+.+..++.+++++..
T Consensus 171 ~~--~---~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 171 DS--V---SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp EE--E---ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred ee--c---cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 32 2 11222221 1111 25789999999988888888887765446777777543
No 55
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.68 E-value=1.3 Score=34.46 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=68.8
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHH
Q 022176 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~ 119 (301)
+++|++..+.. ...-.+..|+..|++|+++-.. .|. +.+.+...+ .+.|.|.+.+..+ +..+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p~---e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SPQ---ELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--ECH---HHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHH
Confidence 35677654432 2345667899999999988662 322 334444422 4678887766433 344566
Q ss_pred HHHHcCCCCceEEEEchhh---------HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 120 AWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~~T---------a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+++.+.+++++++=|..+ .+.+++. |+...+.| ..+..+.++.+.
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~~~~-g~~~~~~~~~l~ 131 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRVYAP-GTPPEVGIADLK 131 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEECCT-TCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEEECC-CCCHHHHHHHHH
Confidence 7777776678998888641 4568888 99875544 345666656554
No 56
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=92.62 E-value=2.2 Score=36.57 Aligned_cols=178 Identities=11% Similarity=0.024 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCcEEEe-ceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
.+.+.++++|+++... ..-. .+....+.++..+ -.+.|.||+.+...-...++.+.+ .++++++++.....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~-- 100 (290)
T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFDD-- 100 (290)
T ss_dssp HHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC--C--
T ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCCC--
Confidence 3455677889887755 3211 1111112233322 367999998765432333444433 46889999875311
Q ss_pred HHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.+.. +..+. ..+..+++.|.+. ..++|+++.+... ..-+.+.|++.|..+....++.
T Consensus 101 ---------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~--- 165 (290)
T 3clk_A 101 ---------DRPF-ISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKP--- 165 (290)
T ss_dssp ---------CSCE-EECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEEC---
T ss_pred ---------CCCE-EEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEc---
Confidence 1111 12222 2244455666654 3468999987643 2346778888887653211221
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.+...+ +..+. + ..+|+|+.++-..+..+++.+.+.+. .++.+++++...
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 224 (290)
T 3clk_A 166 GDYSYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDGTE 224 (290)
T ss_dssp CCSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCCChhhHHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCChH
Confidence 122222 12222 2 46899999998878778877776542 367788876544
No 57
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=92.55 E-value=0.38 Score=42.54 Aligned_cols=177 Identities=10% Similarity=0.033 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++.+ .+.|.||+.+...-...++.+. ..+++++.++....
T Consensus 81 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~---~~~iPvV~~~~~~~-- 150 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSNS-----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELK---KSPVPVVLAASIES-- 150 (332)
T ss_dssp HHHHHHHHHTCEEEEEEC-----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHT---TSSSCEEEESCCCS--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---hCCCCEEEEccccC--
Confidence 344566678998765421 11222222333333 5799999876432222333332 24788999986531
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCc-C-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..........+..+++.|.+. ..++|.++.+.. . ..-+.+.|++.|..+....++..
T Consensus 151 --~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 219 (332)
T 2hsg_A 151 --TN------QIPSVTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG- 219 (332)
T ss_dssp --CT------TSCEEEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC-
T ss_pred --CC------CCCEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC-
Confidence 12 33222221112244456667654 346899998875 3 23477888899976542222221
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
+...+ +..+. + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 220 --~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvvg~D~~ 277 (332)
T 2hsg_A 220 --DYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNT 277 (332)
T ss_dssp --CSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCC
T ss_pred --CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 22221 11222 2 36899999988877777777766543 24567777553
No 58
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=92.32 E-value=0.13 Score=46.05 Aligned_cols=175 Identities=10% Similarity=0.053 Sum_probs=97.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++.... ...+.+...+.++. -...|.||+.....-...++.+.+ .+++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGV-----TDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA---AGIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEE-----CTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH---CSSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEe-----CCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh---CCCCEEEEeCCC---
Confidence 44556667898875432 11222222222222 367999999865433344555544 468888886421
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCc--C------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~--~------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
... .... +..+. ..+...++.|.+.. .++|.++.+.. . ..-+.+.|+++|..+....++..
T Consensus 158 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VDAM-VGISHRRAGREMAQAILKAG--YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SSEE-EEECHHHHHHHHHHHHHHHT--CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 011 2211 22222 23444556666543 36788888764 1 13467888899987765544432
Q ss_pred eeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 213 EPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 213 ~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
....+ + +++...++|+|+..+-..+-..++.+.+.+. .++.++.++.
T Consensus 228 ---~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~disvvg~D~ 284 (344)
T 3kjx_A 228 ---GSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQGIDIPGQIGLAGFNN 284 (344)
T ss_dssp ---CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred ---CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 22221 1 2222247899999998888777777776553 3566666654
No 59
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=92.28 E-value=0.75 Score=39.31 Aligned_cols=170 Identities=11% Similarity=0.029 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++..+.. . .+.+. . ..+ ++|.||+.+...-...++.+.+ .++++++++....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~---~-~~~-~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 91 (277)
T 3cs3_A 29 GIKKGLALFDYEMIVCSG---K--KSHLF---I-PEK-MVDGAIILDWTFPTKEIEKFAE---RGHSIVVLDRTTE---- 91 (277)
T ss_dssp HHHHHHHTTTCEEEEEES---T--TTTTC---C-CTT-TCSEEEEECTTSCHHHHHHHHH---TTCEEEESSSCCC----
T ss_pred HHHHHHHHCCCeEEEEeC---C--CCHHH---H-hhc-cccEEEEecCCCCHHHHHHHHh---cCCCEEEEecCCC----
Confidence 445567788988764322 1 11110 0 012 7999998765322233444444 4688999986431
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
.. ++..........+..+++.|.+. ..++|+++.+.... .-+.+.|++.|..+. ++.. .
T Consensus 92 ~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~---~ 157 (277)
T 3cs3_A 92 HR------NIRQVLLDNRGGATQAIEQFVNV--GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQG---D 157 (277)
T ss_dssp ST------TEEEEEECHHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEEC---C
T ss_pred CC------CCCEEEeCcHHHHHHHHHHHHHc--CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeC---C
Confidence 11 22221111112244455666654 24689998876432 246677888997765 2221 2
Q ss_pred CCcH---HHHHH-c----CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 217 HVDQ---TVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 217 ~~~~---~~~~~-~----~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
...+ ...+. + ..+|+|+.++-..+..+++.+.+.+. .++.+++++...
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 216 (277)
T 3cs3_A 158 FTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDNSE 216 (277)
T ss_dssp SSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSCCH
T ss_pred CChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCCcH
Confidence 2221 12222 2 25789998888888888888876653 255666665443
No 60
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=92.07 E-value=0.87 Score=38.81 Aligned_cols=176 Identities=10% Similarity=0.084 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++.... ...+.+...+.++. -.+.|.||+.+.. .....++.+.+ .++|++.++....
T Consensus 22 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~i~~~~~ 93 (271)
T 2dri_A 22 GAQKEADKLGYNLVVLD-----SQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRQAT 93 (271)
T ss_dssp HHHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCcEEEEeC-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEecCCCC
Confidence 34556778898876532 11222222222222 3579999987643 22233444444 3688999986421
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (301)
.. +....+..+. ..+...++.|.+.....++|+++.|.... .-+.+.|++.|..+... +
T Consensus 94 ----~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~- 160 (271)
T 2dri_A 94 ----KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--Q- 160 (271)
T ss_dssp ----SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--E-
T ss_pred ----CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--c-
Confidence 11 2111122222 22344555665542223699999876432 34677888888765331 1
Q ss_pred eeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 212 TEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 212 ~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
......+ + ++.....+++|+.++-..+-..++.+.+.+..++.++.++.
T Consensus 161 --~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~~dv~vvGfD~ 216 (271)
T 2dri_A 161 --PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDG 216 (271)
T ss_dssp --ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEEC
T ss_pred --CCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCCCCcEEEEecC
Confidence 1122222 1 22222468999999988888888887766544677877754
No 61
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=92.00 E-value=1.1 Score=35.86 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~ 118 (301)
++++|++..+.. ...-++..|+..|++|+++.... | .+.+.+...+ .+.|.|.+++. ..+..++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~--p---~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ--T---PEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC--C---HHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC--C---HHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHH
Confidence 456777764432 33567778999999999887652 1 2345455533 57888888775 3456667
Q ss_pred HHHHHcCCCCceEEEEchhhHHH---HHHHhhcccCCCceeecCCC
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASI---FEEVIQSSKCSLDVAFSPSK 161 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~---L~~~~~~~~~G~~~~~~p~~ 161 (301)
+.+++.+.+++++++=|....+. +++. |+...+.|..
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~~ 130 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPGT 130 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTTC
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCCC
Confidence 77777766679999989766543 6666 9875565543
No 62
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=91.92 E-value=6.4 Score=36.86 Aligned_cols=199 Identities=11% Similarity=0.040 Sum_probs=113.1
Q ss_pred chHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~ 128 (301)
+..++.+.|++.|+++..+|=+. ..+..+ ..++ .+.++.....-+..++.+-....+.+++.. +
T Consensus 183 d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~-ei~~~~~A~~niv~~~~~~~~~A~~Le~~~--G 258 (458)
T 1mio_B 183 DMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIE-DLKDTGNSDLTLSLGSYASDLGAKTLEKKC--K 258 (458)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHH-HHHTTSSCSEEEEESHHHHHHHHHHHHHHS--C
T ss_pred HHHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHH-HHHhhccCCEEEEEchhhHHHHHHHHHHHh--C
Confidence 34799999999999999877332 222111 1233 344778888888889887677777776532 3
Q ss_pred ceEEE----Ec-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHh
Q 022176 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (301)
Q Consensus 129 ~~i~a----vG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~ 199 (301)
++++. +| ..|.+.|++..+ ..|.. +|+... -+.+.+.+.... ..|+++++..+....-.|...|.+
T Consensus 259 iP~~~~~~p~G~~~T~~~l~~la~--~~g~~---~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~e 333 (458)
T 1mio_B 259 VPFKTLRTPIGVSATDEFIMALSE--ATGKE---VPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIE 333 (458)
T ss_dssp CCEEEECCCBHHHHHHHHHHHHHH--HHCCC---CCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHT
T ss_pred CCEEecCCCcCHHHHHHHHHHHHH--HHCCC---chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHH
Confidence 44444 44 678777777521 11432 121100 111333332211 267899998887667789999999
Q ss_pred CCCeeEEEeeeeeeeCCCCcHHHHHHcCC---CC-EEEEE-ChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCC
Q 022176 200 RGFEVVRLNTYTTEPVHHVDQTVLKQALS---IP-VVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 274 (301)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~~~~---~d-~I~ft-S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~ 274 (301)
.|.++..+.+.. ..+...+.+.+.+.. .+ .|++. ....++.+++.. ...++.-|..-...+++.|+.
T Consensus 334 lG~~vv~v~~~~--~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~------~pDl~ig~~~~~~~a~k~gip 405 (458)
T 1mio_B 334 LGAIPKYVVTGT--PGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNE------GVDLLISNTYGKFIAREENIP 405 (458)
T ss_dssp TTCEEEEEEESS--CCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHS------CCSEEEESGGGHHHHHHHTCC
T ss_pred CCCEEEEEEeCC--CCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhc------CCCEEEeCcchHHHHHHcCCC
Confidence 999886655533 111111122111222 34 46664 666655555433 234555555555566677876
Q ss_pred ee
Q 022176 275 NV 276 (301)
Q Consensus 275 ~~ 276 (301)
-+
T Consensus 406 ~~ 407 (458)
T 1mio_B 406 FV 407 (458)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 63
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=91.89 E-value=0.18 Score=43.40 Aligned_cols=170 Identities=9% Similarity=0.015 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCc-EEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh-h
Q 022176 63 GKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-T 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~-v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~-T 138 (301)
..+.+.++++|++ +...+.- .+.+...+.++. -.+.|.||+.+ ..+......+++++.+|.. .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~ 96 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANI 96 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCC
T ss_pred HHHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEccccc
Confidence 3455667788998 5543221 122221222222 26899999988 1122222357899999875 3
Q ss_pred HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeee
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
. .. ++ .+.......+...++.|. . ..++|.++.+... ..-+.+.|++.|..+... ++.
T Consensus 97 ~----~~------~~-~V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~ 161 (277)
T 3hs3_A 97 N----DD------IV-RIVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP 161 (277)
T ss_dssp C----SS------SE-EEEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC
T ss_pred C----CC------CE-EEEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc
Confidence 1 12 33 222211223445566666 3 3579999988743 234677889999877655 332
Q ss_pred eeeCCCCcHH---HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 212 TEPVHHVDQT---VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 212 ~~~~~~~~~~---~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.. ...+. +++...++++|+..+-..+-..++.+.+.+. .++.++.++..
T Consensus 162 ~~---~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 162 EN---NPYISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp SS---CHHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CC---chHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeeCCc
Confidence 21 11221 2222247899999998888778777776653 35666666543
No 64
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.69 E-value=1.3 Score=35.54 Aligned_cols=118 Identities=10% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCEEEEEcCCcChhHHHHHHHhC-CCeeEEEeeee------------eeeCCCCcHHHHHH---cCCCCEEEEEChHH--
Q 022176 178 KCTVLYPASAKASNEIEEGLSNR-GFEVVRLNTYT------------TEPVHHVDQTVLKQ---ALSIPVVAVASPSA-- 239 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~-G~~v~~~~vY~------------~~~~~~~~~~~~~~---~~~~d~I~ftS~sa-- 239 (301)
+.+|+++....-...+.+.|.+. |++|.-+..-. ....+......+.. +.+.|+|+.+.+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~ 118 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQG 118 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHH
Confidence 34666665554455666666666 66554332100 00111111222332 35789999877643
Q ss_pred HHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 240 VRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 240 v~~~~~~l~~~~~-~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
.......++..+. ..+.+.+.++...+.+++.|...++.|..-....|.+.+...+
T Consensus 119 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~ 175 (183)
T 3c85_A 119 NQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQL 175 (183)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHHHhc
Confidence 3333344443321 1223345678888999999998877666555556666655443
No 65
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=91.60 E-value=3.1 Score=38.68 Aligned_cols=172 Identities=15% Similarity=0.085 Sum_probs=98.7
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~ 123 (301)
.+...++|+++.+-. +...+.|++.|+ ++...+- . .+.+++.+ .+.++|.|++.|..-+. .+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~---~~~~~d~l~v~~~~~i~~~~l~~~-- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIK---AISSAHIIGIRSRTQLTEEIFAAA-- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHH---HHTTCSEEEECSSCCBCHHHHHHC--
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHH---HccCCEEEEEcCCCCCCHHHHHhC--
Confidence 344467899998654 556678999998 6665431 1 12233433 45789999887754432 233322
Q ss_pred cCCCCceEE-EEchhh----HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc------------------
Q 022176 124 AGTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK------------------ 173 (301)
Q Consensus 124 ~~~~~~~i~-avG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~------------------ 173 (301)
++++++ +.|-++ -+++++. |+.+.-.|. .+++..++. +.+
T Consensus 79 ---p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 79 ---NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp ---TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred ---CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 345554 334444 5677888 998866664 333332221 110
Q ss_pred ---CCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC--cHHHHHHcCCCCEEEEEChHH
Q 022176 174 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 174 ---~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~I~ftS~sa 239 (301)
....|+++.++.-......++..|+..|.+|..+..+........ ...+.+.+.+.|+|++.-|.+
T Consensus 149 ~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 112578899999888888999999999987654443322111100 001122235678888877654
No 66
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=91.35 E-value=0.99 Score=38.34 Aligned_cols=178 Identities=13% Similarity=0.094 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~ 143 (301)
.+.+.++++|+++.....-. .+....+.++. + .-.++|.||+.+...-...++ .....++++++++....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~-l-~~~~vdgiI~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~---- 89 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILS-LARLKRYLENT-T-LAYLTDGLILASYDLTERFEE---GRLPTERPVVLVDAQNP---- 89 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCS-CCCCC-----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCT----
T ss_pred HHHHHHHHCCCEEEEEeCCC-chhhHHHHHHH-H-HhCCCCEEEEecCCCCHHHHH---HHhhcCCCEEEEeccCC----
Confidence 44556678898887654211 10011112222 2 125799999876543222222 22234789999987532
Q ss_pred HHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCc-C---h--------hHHHHHHHhCCCeeEEEeeee
Q 022176 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~-~---~--------~~L~~~L~~~G~~v~~~~vY~ 211 (301)
++..........+..+++.|.+. ..++|.++.+.. . . .-+.+.|++.|..+....++.
T Consensus 90 --------~~~~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 159 (276)
T 2h0a_A 90 --------RYDSVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI 159 (276)
T ss_dssp --------TSEEEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred --------CCCEEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeee
Confidence 21111111222345566777665 346899988764 3 1 235677888887654322222
Q ss_pred eeeCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 212 TEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 212 ~~~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
. +...+ +..+. + ..+|+|+..+-..+..+++.+.+.+. .++.++.++...
T Consensus 160 ~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 219 (276)
T 2h0a_A 160 T---RHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDGHP 219 (276)
T ss_dssp E---CSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESCCT
T ss_pred c---CCChHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc
Confidence 1 11211 12222 2 35889998888888888888776552 356677776543
No 67
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=90.84 E-value=3.7 Score=35.36 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=93.6
Q ss_pred HHHHHHHhCCC---cEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~---~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+ ++... +... ..+.+.....++. -.+.|.||+++..+...+.. . ..++|++.+|..-
T Consensus 22 gi~~~l~~~gy~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~~ 93 (295)
T 3lft_A 22 GIQDGLAEEGYKDDQVKID-FMNS--EGDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS---A--TKDLPVIMAAITD 93 (295)
T ss_dssp HHHHHHHHTTCCGGGEEEE-EEEC--TTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH---H--CSSSCEEEESCSC
T ss_pred HHHHHHHHcCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH---c--CCCCCEEEEeccC
Confidence 45567788999 65432 1111 1233333333322 36799999998766554322 1 2578898887421
Q ss_pred HHH---HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEee
Q 022176 139 ASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 139 a~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~v 209 (301)
-.. .... ...+-...-+.........++.|.+.....++|.++.+... .+.+.+.|++.|+++....+
T Consensus 94 ~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~ 170 (295)
T 3lft_A 94 PIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAV 170 (295)
T ss_dssp TTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEec
Confidence 100 0000 00011111111122234444555544223478998876643 24567788899988766554
Q ss_pred eeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHhhhccc-CCCceEEEECHH
Q 022176 210 YTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGET 263 (301)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~~~~d~I~ftS~sav~~~~~~l~~~~-~~~~~i~aIG~~ 263 (301)
+.. + ...+..+. +.++|+|+..+-..+-..++.+.+.. ..+++++.....
T Consensus 171 ~~~---~-~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~~ 222 (295)
T 3lft_A 171 PST---N-EIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSATA 222 (295)
T ss_dssp SSG---G-GHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHHHTTTTCCCEEESSHH
T ss_pred CCH---H-HHHHHHHHHHhcCCEEEECCchhHHHHHHHHHHHHHHcCCCEEeCCHH
Confidence 421 1 11222333 36789998887655443333332221 236777777653
No 68
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=90.81 E-value=1.9 Score=36.86 Aligned_cols=176 Identities=11% Similarity=0.092 Sum_probs=92.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|++++... ...+.+...+.++. -.+.|.||+.+.. .+...++.+.+ .+++++.++....
T Consensus 22 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (283)
T 2ioy_A 22 GAEEKAKELGYKIIVED-----SQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANS---KNIPVITIDRSAN 93 (283)
T ss_dssp HHHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHhcCcEEEEec-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHH---CCCeEEEecCCCC
Confidence 34456677898876432 11222211122222 2579999987542 22233444544 3678889886421
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEEEeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTY 210 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY 210 (301)
.. .....+..+. ..+...++.|.+.....++|+++.|.... .-+.+.|++. |+.+.. .+
T Consensus 94 ----~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~~ 161 (283)
T 2ioy_A 94 ----GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--KQ 161 (283)
T ss_dssp ----SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--EE
T ss_pred ----Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--ec
Confidence 11 1111112222 22444556665541123689999876432 2366777777 765422 11
Q ss_pred eeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 211 TTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 211 ~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
......+ + ++....++++|+..+-..+-..++.+.+.+..++.++.++.
T Consensus 162 ---~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 162 ---AADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp ---ECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred ---cCCCCHHHHHHHHHHHHHhCCCccEEEECCchHHHHHHHHHHHCCCCCcEEEEeCC
Confidence 1122221 1 12222468999999988887777777765544677877764
No 69
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=90.81 E-value=1.3 Score=34.45 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=65.1
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHHhhhcccCCCceEEEECH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-----av~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
...+...|+..|++|..+-.. ++++ ++.+.. .++|+|.+++.. .++.+.+.+++.+..++++++=|.
T Consensus 20 ~~~v~~~l~~~G~~Vi~lG~~--~p~e----~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~ 93 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVL--SPQE----LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE--ECHH----HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred HHHHHHHHHHCCCEEEECCCC--CCHH----HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 456778899999998766652 3322 233222 478888887743 244455556554333577877775
Q ss_pred H---------HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 263 T---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 263 ~---------Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
. ..+.+++.|+..++ .+..+..++++.+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~G~d~~~-~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 94 IVVGKQHWPDVEKRFKDMGYDRVY-APGTPPEVGIADLKKDLN 135 (137)
T ss_dssp CSSSSCCHHHHHHHHHHTTCSEEC-CTTCCHHHHHHHHHHHHT
T ss_pred CcCchHhhhhhHHHHHHCCCCEEE-CCCCCHHHHHHHHHHHhC
Confidence 3 25569999997744 666788888888877653
No 70
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=90.75 E-value=1.2 Score=39.39 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++.... ...+.+...+.++. -.+.|.||+.+...-....+.+.+ ..+++++++|....
T Consensus 79 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 149 (340)
T 1qpz_A 79 AVEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 149 (340)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC--
T ss_pred HHHHHHHHcCCEEEEEe-----CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC--
Confidence 34456678899876421 11232222222222 257999999764322223344432 24788999986431
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++...+..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.
T Consensus 150 --~~------~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-- 217 (340)
T 1qpz_A 150 --KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ-- 217 (340)
T ss_dssp --CC------SSSEEEECCHHHHHHHHHHHHHHHT--CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCC--
T ss_pred --CC------CCCCEEEECHHHHHHHHHHHHHHCC--CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEe--
Confidence 11 2111122222 22344556666543 4689999876432 246678888887653222221
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.+...+ +..+. + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 218 -~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D~~ 276 (340)
T 1qpz_A 218 -GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV 276 (340)
T ss_dssp -CCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred -CCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEeECCc
Confidence 122221 12222 2 36899999988877777777776542 35667776543
No 71
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=90.69 E-value=0.77 Score=40.08 Aligned_cols=178 Identities=10% Similarity=0.045 Sum_probs=94.8
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
+.+.++++|+++..+.. ...+.+...+.++. -.++|.||+.... ++...++.+.+ .++++++++.....
T Consensus 22 i~~~~~~~g~~~~~~~~----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 94 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVP----QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE---MGIPVVTLDTDSPD 94 (313)
T ss_dssp HHHHHHHHTCEEEEECC----SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCTT
T ss_pred HHHHHHHcCCEEEEECC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 34566778988764321 01222222222222 2579999986543 22234454544 46889998875311
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.. .+.. +..+. ..+..+++.|.+.....++|+++.+... ..-+.+.|++.|+++.. ++.
T Consensus 95 ---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~- 161 (313)
T 2h3h_A 95 ---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILN- 161 (313)
T ss_dssp ---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEE-
T ss_pred ---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eec-
Confidence 01 2222 22222 2234455555543112478999988743 23466778888887643 221
Q ss_pred eeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022176 213 EPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (301)
Q Consensus 213 ~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~T 264 (301)
.....+ + ++.....+|+|+..+-..+..+++.+.+.+. .++.++.++...
T Consensus 162 --~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 162 --DEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp --CSSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEECCCH
T ss_pred --CCCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHHHHHHcCCCCCeEEEEeCCCH
Confidence 122221 1 2222246899999987777777777766542 367788876543
No 72
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=90.65 E-value=1.6 Score=37.85 Aligned_cols=176 Identities=10% Similarity=0.063 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
..+.+.++++|+++..... ..+.+...+.++. -.++|.||+..... ....++.+.+ .++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ---EGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEECCcC
Confidence 3456677789998875432 2232222222222 25799999987543 2344555543 478999998754
Q ss_pred HHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhc-cCCCCCCEEEEEcCCcCh-------hHHHHHHHhC----CCeeE
Q 022176 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELP-KNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVV 205 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~-~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~----G~~v~ 205 (301)
.. . ++...+..+. ..+..+++.|. .. ..++|+++.+.... .-+.+.|++. +..+.
T Consensus 94 ~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~--G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~ 161 (313)
T 3m9w_A 94 ND----A------DIDFYISFDNEKVGELQAKALVDIV--PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVV 161 (313)
T ss_dssp TT----S------CCSEEEEECHHHHHHHHHHHHHHHC--SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CC----C------CceEEEecCHHHHHHHHHHHHHHhC--CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEE
Confidence 21 2 4421122222 23455666666 43 23589999876542 3455666665 44332
Q ss_pred EEeeeeeeeCCCCcH-------HHHHHc-CCCCEEEEEChHHHHHHHHhhhcccCC-CceEEEECH
Q 022176 206 RLNTYTTEPVHHVDQ-------TVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGE 262 (301)
Q Consensus 206 ~~~vY~~~~~~~~~~-------~~~~~~-~~~d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aIG~ 262 (301)
... | ......+ +++... ..+++|+.++-..+..+++.+.+.+.. ++.++.++.
T Consensus 162 ~~~-~---~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 162 GDQ-W---VDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp EEE-E---CGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCCSC
T ss_pred eec-c---CCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCCCCcEEEecCC
Confidence 221 1 1111111 122223 478999999988888888888776532 566776653
No 73
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=90.57 E-value=0.2 Score=43.63 Aligned_cols=180 Identities=8% Similarity=-0.044 Sum_probs=98.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.+.|.||+.+...-. . +......+++++++|......
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~---~~~~~~~~iPvV~~~~~~~~~ 105 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-V---DPESGDVSIPTVMINCRPQTR 105 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-C---CCCCTTCCCCEEEEEEECSST
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH-H---HHHHHhCCCCEEEECCCCCCC
Confidence 455677889998875432 1222222222222 2579999987654322 1 112223478999998653110
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeee--
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT-- 212 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~-- 212 (301)
. ++..+.......+...++.|.+. ..++|.++.+.... .-+.+.|++.|..+....++..
T Consensus 106 ---~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 174 (301)
T 3miz_A 106 ---E------LLPSIEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMD 174 (301)
T ss_dssp ---T------SSCEEEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEE
T ss_pred ---C------CCCEEeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCC
Confidence 0 12221111122344556667664 34689999876542 3466778888877643333333
Q ss_pred -eeCCCCcH--HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 213 -EPVHHVDQ--TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 213 -~~~~~~~~--~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
........ +.... + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 235 (301)
T 3miz_A 175 GPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDDF 235 (301)
T ss_dssp SSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBCC
T ss_pred CCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCc
Confidence 11111111 22222 2 47899999998888888888877653 24566666543
No 74
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.43 E-value=2.1 Score=32.57 Aligned_cols=68 Identities=6% Similarity=0.079 Sum_probs=38.5
Q ss_pred CCCCEEEEEChHHHHHH--HHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 227 LSIPVVAVASPSAVRSW--VNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~--~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.+.|+++++.+..-.+. ...+++.+...+.+-+-++.-.+.+++.|...++.|.. .....+.+.+..|
T Consensus 69 ~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~----~~~~~l~~~i~~p 138 (141)
T 3llv_A 69 EGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVAD----AVKQAFMDKIKKM 138 (141)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHH----HHHHHHHHHHHHC
T ss_pred ccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECHHH----HHHHHHHHHHhCc
Confidence 57899998877433332 22233322112333455777788999999987775543 3344444444433
No 75
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=90.27 E-value=6 Score=34.18 Aligned_cols=185 Identities=8% Similarity=-0.022 Sum_probs=90.7
Q ss_pred HHHHHHHhCCC----cEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.+.+.++++|+ ++..+ +... ..+.+...+.++. -.+.|.||+++..+...+.. . ..++|++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTA--QGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS---A--TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEEC--TTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH---H--CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh---c--CCCcCEEEEecC
Confidence 45567788898 54421 1111 1232322233322 26799999998766554332 1 357888888742
Q ss_pred hHHH---HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEe
Q 022176 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~ 208 (301)
--.. .... ...+-...-+.........++.|.+.....++|.++.+... .+.+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1110 0000 00010111111112234444555443223478998877643 2456778889999876655
Q ss_pred eeeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHhhhccc-CCCceEEEECHH
Q 022176 209 TYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGET 263 (301)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~~~~d~I~ftS~sav~~~~~~l~~~~-~~~~~i~aIG~~ 263 (301)
++.. .......+. +.++|+|+..+-..+-..++.+.+.. ..+++++.....
T Consensus 177 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~~ 229 (302)
T 2qh8_A 177 ALKS----ADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATS 229 (302)
T ss_dssp CSSG----GGHHHHHHHHGGGCSEEEECSCHHHHTTHHHHHHHHHHTTCCEEESSHH
T ss_pred cCCh----HHHHHHHHHHhccCCEEEECCcHhHHHHHHHHHHHHHHcCCCEEECCHH
Confidence 4321 111222222 35789998887654433222222111 125777777653
No 76
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=90.10 E-value=1.1 Score=35.06 Aligned_cols=113 Identities=13% Similarity=0.003 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeee-------------eCCCCcHHHHHH--cCCCCEEEEEChHH--
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE-------------PVHHVDQTVLKQ--ALSIPVVAVASPSA-- 239 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~-------------~~~~~~~~~~~~--~~~~d~I~ftS~sa-- 239 (301)
.+.+|+++.+..-...+...|.+.|.+|.-+..-... ..+......+.. +..+|+|+.+.+..
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~ 97 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence 3567888877665677888888888765443221100 001111122222 35689888887643
Q ss_pred HHHHHHhhhcccCCCceE--EEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 240 VRSWVNLISDTEQWSNSV--ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 240 v~~~~~~l~~~~~~~~~i--~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
.......++... ....+ .+.++...+.+++.|.. ++.|.......|.+.|
T Consensus 98 ~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l 149 (155)
T 2g1u_A 98 NFFISMNARYMF-NVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFI 149 (155)
T ss_dssp HHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHH
Confidence 233333333311 12333 34577888889999988 6655444333444333
No 77
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=89.98 E-value=3.6 Score=35.97 Aligned_cols=174 Identities=11% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 66 IKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 66 ~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.++++ |+++..... ..+.+...+.++. -.++|.||+.+.. ++...++.+.+ .++++++++.....
T Consensus 28 ~~~a~~~~g~~l~i~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 99 (325)
T 2x7x_A 28 LREAMFYNGVSVEIRSA-----GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQ---KGIPVILVDRKILS 99 (325)
T ss_dssp HHHHTTSSSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCCSS
T ss_pred HHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 3445567 887764321 1222221222222 2579999987643 22334454544 36889999864311
Q ss_pred HHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEEEeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYT 211 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY~ 211 (301)
.. .+.. +..+. ..+..+++.|.+.....++|+++.+.... .-+.+.|++. |+.+.. ++.
T Consensus 100 ---~~------~~~~-V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~--~~~ 167 (325)
T 2x7x_A 100 ---DK------YTAY-IGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID--KAD 167 (325)
T ss_dssp ---SC------SSEE-EEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE--EEE
T ss_pred ---cc------eeEE-EecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eec
Confidence 01 1221 12222 23444556665531134689999876432 3456777787 766543 221
Q ss_pred eeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECH
Q 022176 212 TEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (301)
Q Consensus 212 ~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~ 262 (301)
.....+ + ++.....+|+|+.++-..+-.+++.+.+.+. .++.++.++.
T Consensus 168 ---~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~g~~~al~~~Gip~dv~vig~D~ 223 (325)
T 2x7x_A 168 ---AAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDA 223 (325)
T ss_dssp ---CTTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHHHHHHHHHHTTCTTSSEEEEEEC
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCeEEEEECC
Confidence 122221 1 1222246899999988777777777665542 3566666654
No 78
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=89.81 E-value=3.8 Score=31.09 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEecee------------EeeeC--CCchHHHHHHhcCCCccEEEEeChHHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av 114 (301)
.+++|+|+-...-+..+++.|.+.|+++..+-.- ..... .+.+.+.+ . .+.+.|.||.+.++.-
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-L-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-S-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-C-CcccCCEEEEecCCHH
Confidence 4678888877666778899999999888764321 11111 12122221 1 3567899999887543
Q ss_pred HH--HHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 115 SV--FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 115 ~~--f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.. ....+++.+...+-.-+-++.-.+.|++. |....+.|....+..+...+.
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 32 22334444422222333455556788888 988777777666777766553
No 79
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=89.81 E-value=1.4 Score=33.34 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=65.2
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEecee------------EeeeCCCchHHHHHHhc--CCCccEEEEeChHH
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA 113 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a 113 (301)
+.+++|+|+-...-+..+++.|.+.|+++..+-.- ..... |... .+.+.+ +.++|.||.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~-d~~~-~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIA-NATE-ENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEEC-CTTC-HHHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEe-CCCC-HHHHHhcCCCCCCEEEECCCCc
Confidence 45678999887666778889999999877654210 11111 1111 122222 45789998888753
Q ss_pred --HH-HHHHHHHHcCCCCceEEE--EchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHh
Q 022176 114 --GS-VFLEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (301)
Q Consensus 114 --v~-~f~~~l~~~~~~~~~i~a--vG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l 171 (301)
.. .....+.+.+.+ ++++ -++...+.+++. |....+.|....+..|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHH
Confidence 22 233344454433 4443 445556677777 88766666665666666554
No 80
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=89.69 E-value=1 Score=41.31 Aligned_cols=164 Identities=11% Similarity=-0.008 Sum_probs=84.6
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
+.+.++++|+++..+.. ..+.+.++ .+ .-...|.||+.... ....+.+. ..+++++.+|......-..
T Consensus 46 i~~~a~~~g~~~~i~~~-----~~~~~~i~-~l-~~~~vDGiIi~~~~--~~~~~~l~---~~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIE-----EDFRARID-KI-KDWLGDGVIADFDD--KQIEQALA---DVDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHTCCEEEEEC-----C-CC----------CCCSEEEEETTC--HHHHHHHT---TCCSCEEEEEECCSSGGGS
T ss_pred HHHHHHhcCCCeEEEec-----CCccchhh-hH-hcCCCCEEEEecCC--hHHHHHHh---hCCCCEEEecCCccccccC
Confidence 44556678998876642 11112222 22 22579999985432 22333332 3578999998754211011
Q ss_pred HhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh---------hHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 145 ~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~---------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
. ++..+.......+...++.|.+. ..++|.++.+.... .-+.+.|++.|.....+.. ....
T Consensus 114 ~------~~~~V~~D~~~~g~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~~ 183 (412)
T 4fe7_A 114 P------PVHYIATDNYALVESAFLHLKEK--GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQG--LETA 183 (412)
T ss_dssp C------SSEEEEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECC--SCSS
T ss_pred C------CCCEEEeCHHHHHHHHHHHHHHc--CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCcccccc--cccc
Confidence 1 33222221122345566667664 34789999887532 2366778888876532211 1111
Q ss_pred CCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcc
Q 022176 216 HHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDT 250 (301)
Q Consensus 216 ~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~ 250 (301)
....+ + +++....+|+|+.++-..+..+++.+.+.
T Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~g~~~al~~~ 225 (412)
T 4fe7_A 184 PENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHL 225 (412)
T ss_dssp CSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhCCCCeEEEEEecHHHHHHHHHHHHc
Confidence 11111 1 12223578999999888777776666543
No 81
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=89.69 E-value=1.9 Score=32.59 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=37.0
Q ss_pred cCCCCEEEEEChH--HHH-HHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHH
Q 022176 226 ALSIPVVAVASPS--AVR-SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 291 (301)
Q Consensus 226 ~~~~d~I~ftS~s--av~-~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai 291 (301)
..++|+|+.+.+. ... ......+..+...+.+.+-++...+.+++.|...++.|.......|.+.+
T Consensus 68 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 68 IRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHH
Confidence 3578999888774 222 23333333322122223456777788899999876655444444444444
No 82
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=89.65 E-value=3.5 Score=30.89 Aligned_cols=56 Identities=11% Similarity=-0.064 Sum_probs=32.9
Q ss_pred cCCCCEEEEEChHHHH--HHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCC
Q 022176 226 ALSIPVVAVASPSAVR--SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH 281 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~--~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ 281 (301)
+.+.|+|+.+.+.... .+....+..+...+.+.+.++...+.+++.|...++.|+.
T Consensus 67 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~v~~p~~ 124 (140)
T 1lss_A 67 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL 124 (140)
T ss_dssp TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred cccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHcCCCEEECHHH
Confidence 4678988888664322 2223333322223334455778888899999887664443
No 83
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=89.56 E-value=1.9 Score=39.94 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=58.1
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHHHhhhcccCCCceEEEEC-
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIG- 261 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s-------av~~~~~~l~~~~~~~~~i~aIG- 261 (301)
.+.++++|.+.|+++..+.+|+... ...++++..+.+++.|+|-||. .+..|+..+......+.+++++|
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~--~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCC--CCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEEC
Confidence 4578888999999876666665332 2234566667899999999985 66677666654333355666665
Q ss_pred --------HHHHHHHHHcCCCe
Q 022176 262 --------ETTASAAKRLGLKN 275 (301)
Q Consensus 262 --------~~Ta~al~~~G~~~ 275 (301)
+...+.+++.|++.
T Consensus 361 yGWsg~a~~~~~~~l~~~~~~~ 382 (410)
T 4dik_A 361 HGWAPSAERTAGELLKETKFRI 382 (410)
T ss_dssp CCCCCTTSCCHHHHHTTSSCEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEE
Confidence 36678888899875
No 84
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=89.54 E-value=5 Score=29.96 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEecee-----------E--eeeC--CCchHHHHHHhcCCCccEEEEeChHHH
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----------Q--HAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~-----------~--~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av 114 (301)
+|+|+|+-...-+..+++.|.+.|.++..+-.- . .... .+.+.+.. ..+.+.|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLED--AGIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHH--TTTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHH--cCcccCCEEEEeeCCch
Confidence 467888865555667788888888776644210 0 0111 11111111 12567899998876542
Q ss_pred H-H-HHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 115 S-V-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 115 ~-~-f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
. . +...+...+...+-+.+-++...+.+++. |+...+.|....+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~~ 135 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHhc
Confidence 2 2 23334444433444445677777888887 987767776666666655553
No 85
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=89.49 E-value=2.5 Score=36.27 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHH-HHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGS-VFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~-~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-. ..++.+ ...++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~---~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIACS-----EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW---ANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT---TTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH---HhCCCCEEEECCccC-
Confidence 344566788988764321 1222222222222 2579999997653211 122222 224788999986431
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..........+..+++.|.+. ..++|.++.+... ..-+.+.|+++|.+.. .++.
T Consensus 112 ---~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~--~~~~-- 176 (293)
T 2iks_A 112 ---RE------HFTSVVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPREVH--FLYA-- 176 (293)
T ss_dssp ---TT------TCEEEEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEE--EEEE--
T ss_pred ---cC------CCCEEEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCcc--EEEc--
Confidence 12 33322221122344466667654 3478999887643 2346677888886322 1222
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
.....+ +..+. + ..+++|+..+-..+..+++.+.+.+. .++.++.++...
T Consensus 177 -~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 236 (293)
T 2iks_A 177 -NSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNE 236 (293)
T ss_dssp -SSSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHHHSSCCSSCEEEEESCCG
T ss_pred -CCCChhhHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEEECCHH
Confidence 122222 12222 2 35899999998877777777766542 367788887643
No 86
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=89.32 E-value=6.6 Score=37.56 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------eEeeeCC--CchHHHHHHhcCCCccEEEEeChHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~--d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
..++|+|.--..-+..+++.|.+.|.+++.+.. +.....+ +.+.|.+ . .+.+.|.+|.|....
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~-a-~i~~a~~vi~t~~D~ 203 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAG-L-RVAAARSIIANLSDP 203 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHH-T-TGGGCSEEEECSCHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHh-c-CcccCCEEEEeCCcH
Confidence 356788887777788899999988888765521 1111111 1122222 1 357899999988777
Q ss_pred HHHHHHHH-HHcCCCCceEEEE--chhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 114 GSVFLEAW-KEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 114 v~~f~~~l-~~~~~~~~~i~av--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
...+.-.. ++.+ +.++++. .+...+.|++. |....+.|+...+..|+..+.
T Consensus 204 ~n~~~~~~ar~~~--~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~ 257 (565)
T 4gx0_A 204 DNANLCLTVRSLC--QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRAT 257 (565)
T ss_dssp HHHHHHHHHHTTC--CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhc
Confidence 66544332 2333 6677764 45677888888 998767776666666666553
No 87
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=89.32 E-value=1.5 Score=34.27 Aligned_cols=119 Identities=10% Similarity=0.020 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEecee-------------EeeeCCCchHHHHHHhc--CCCccEEEEe
Q 022176 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQGPDTDRLSSVLNA--DTIFDWIIIT 109 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~-------------~~~~~~d~~~l~~~l~~--l~~~d~Iift 109 (301)
+..+.+++|+|.-...-+..++..|.+.|+++..+-.- ..... +... ...+.. +.++|.||.+
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~-d~~~-~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVG-DAAE-FETLKECGMEKADMVFAF 91 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEES-CTTS-HHHHHTTTGGGCSEEEEC
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEe-cCCC-HHHHHHcCcccCCEEEEE
Confidence 36677899999987667788999999999887765211 01101 1111 122222 4578999988
Q ss_pred ChHHHH--HHHHHHHHcCCCCceEE--EEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 110 SPEAGS--VFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 110 S~~av~--~f~~~l~~~~~~~~~i~--avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.++... .....+.... ...+++ +-++...+.+++. |.. .+.|....+..+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~~ 151 (155)
T 2g1u_A 92 TNDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFIIG 151 (155)
T ss_dssp SSCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHHC
T ss_pred eCCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHhc
Confidence 876432 2223333312 234443 4566777888887 988 677776666667666543
No 88
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=89.11 E-value=3.1 Score=31.85 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=70.0
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEecee------------EeeeCC--CchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~--d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.+|+|.-...-+..+++.|.+.|+++..+-.- ...... +.+.+.+ . .+.+.|+||.+.++....
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~-a-~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQL-A-HLECAKWLILTIPNGYEA 85 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHH-T-TGGGCSEEEECCSCHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHh-c-CcccCCEEEEECCChHHH
Confidence 46777776667788889999999887765321 111111 1122221 1 346899999988876544
Q ss_pred H--HHHHHHcCCCCceEEEE--chhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 117 F--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 117 f--~~~l~~~~~~~~~i~av--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
. ...+.+.. ++.++++. .+...+.|++. |....+.|+...++.+++.+.
T Consensus 86 ~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l~ 138 (140)
T 3fwz_A 86 GEIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLE 138 (140)
T ss_dssp HHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHhh
Confidence 2 23333332 35566653 56677888888 998777787777777766553
No 89
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=89.01 E-value=1.6 Score=36.56 Aligned_cols=172 Identities=9% Similarity=0.048 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++...+. ..+.+...+.++. -.+.|.||+.+..... .+.+.+ .+.+++.+|...
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~l~~---~~~pvV~~~~~~--- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES-----QFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT--EEMLAH---WQSSLVLLARDA--- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--TTTSGG---GSSSEEEESSCC---
T ss_pred HHHHHHHHcCCEEEEEeC-----CCcHHHHHHHHHHHHhcCCCEEEEecCcccc--HHHHHh---cCCCEEEEcccc---
Confidence 445567788998765431 1222221222222 3679999988643211 111222 256888888642
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCc-C-------hhHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
- ++..+.......+..+++.|.+.. .++|.++.+.. . ..-+.+.|++.|..+.. ++
T Consensus 90 ---~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~--- 153 (255)
T 1byk_A 90 ---K------GFASVCYDDEGAIKILMQRLYDQG--HRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--AL--- 153 (255)
T ss_dssp ---S------SCEEEEECHHHHHHHHHHHHHHTT--CCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--EC---
T ss_pred ---C------CCCEEEEccHHHHHHHHHHHHHcC--CCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--ee---
Confidence 2 332222211223445666676643 46899998752 2 23467888999976531 11
Q ss_pred eCCCCcHHH---HHH-c-CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHH
Q 022176 214 PVHHVDQTV---LKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA 265 (301)
Q Consensus 214 ~~~~~~~~~---~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta 265 (301)
.....+.. .+. + .++++|+..+-..+..+++.+.+.+..++.+++++....
T Consensus 154 -~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di~vig~d~~~~ 209 (255)
T 1byk_A 154 -PGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPL 209 (255)
T ss_dssp -CCSCHHHHHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCCHH
T ss_pred -cCCccchHHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcEEEEEeCCchh
Confidence 12222211 122 2 468999999988888888877765545788888876443
No 90
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=88.89 E-value=1.3 Score=39.08 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCC--ccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchh
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTI--FDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~--~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.+ +|.||+..... ....++.+.+ .++++++++..
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 97 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSK---AGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH---HTCEEEEESCC
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEECCC
Confidence 445566788998765421 1222221222222 145 99999876433 3234454544 36889999865
Q ss_pred hHHH-HHHHhhcccCC-Cceeec-CCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeE
Q 022176 138 TASI-FEEVIQSSKCS-LDVAFS-PSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 205 (301)
Q Consensus 138 Ta~~-L~~~~~~~~~G-~~~~~~-p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~ 205 (301)
.... ..++ + .....+ .+. ..+..+++.|.+.....++|+++.+.... .-+.+.|++. |+.+.
T Consensus 98 ~~~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 98 PKDLHPWDY------NPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp CTTCCGGGG------TTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCcccchhc------ccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 3210 0001 1 111122 222 22444556666521134689999876432 2367788888 87765
Q ss_pred EEeeeeeeeCCCCcH-------HHHHH-cCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH
Q 022176 206 RLNTYTTEPVHHVDQ-------TVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (301)
Q Consensus 206 ~~~vY~~~~~~~~~~-------~~~~~-~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~ 263 (301)
.. +. .....+ +++.. ...+|+|+.++-..+-.+++.+.+.+. .++.++.++..
T Consensus 172 ~~--~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~g~~~al~~~G~~~di~vvg~D~~ 233 (332)
T 2rjo_A 172 DF--QV---ADWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMALGAIEALRAEGLAGQIPVTGMDGT 233 (332)
T ss_dssp EE--EE---CTTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBCC
T ss_pred ee--cc---CCCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHHHHHHHHHHcCCCCCCEEEeecCC
Confidence 42 21 122221 12222 236889999988877778887776543 25667766553
No 91
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=88.75 E-value=0.28 Score=42.26 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=93.6
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-...++.+ .++++++++.....
T Consensus 29 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~~-- 96 (288)
T 2qu7_A 29 ISHECQKHHLHVAVASS-----EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELES-- 96 (288)
T ss_dssp HHHHHGGGTCEEEEEEC-----TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCSS--
T ss_pred HHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccCC--
Confidence 34556678988764321 1232222222222 2579999987654321112222 46889998865311
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
. ++..........+..+++.|.+. ..++|+++.+... ..-+.+.|++.|..+....++. ...
T Consensus 97 --~------~~~~V~~d~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~-~~~ 165 (288)
T 2qu7_A 97 --T------SLPSITVDNEEAAYIATKRVLES--TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHY-SDQ 165 (288)
T ss_dssp --C------CCCEEEECHHHHHHHHHHHHHTS--SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEE-CCS
T ss_pred --C------CCCEEEECcHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEe-ccC
Confidence 1 22221121122344566667654 3468999887643 2346677888887653211220 011
Q ss_pred CC----CcH---HHHHH-c-CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022176 216 HH----VDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (301)
Q Consensus 216 ~~----~~~---~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~T 264 (301)
+. ..+ +..+. + ..+|+|+..+-..+..+++.+.+.+. .++.++.++...
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 226 (288)
T 2qu7_A 166 QLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDDSY 226 (288)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESCCT
T ss_pred CccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeCChH
Confidence 11 111 11111 1 27899999998877777777776542 367788876544
No 92
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=88.28 E-value=3.7 Score=31.84 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=31.8
Q ss_pred cCCCCEEEEEChHHHHHH-HHh-hhcccCCCceEE--EECHHHHHHHHHcCCCeeEec
Q 022176 226 ALSIPVVAVASPSAVRSW-VNL-ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 279 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~-~~~-l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~ 279 (301)
+.+.|+|+.+.+....+. ... .+... ...+++ +-++...+.+++.|...++.|
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~G~~~vi~p 125 (153)
T 1id1_A 69 IDRCRAILALSDNDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMVHPDIILSP 125 (153)
T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred hhhCCEEEEecCChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHcCCCEEEcH
Confidence 568898888866443333 222 22221 133444 457888888999999876643
No 93
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=88.12 E-value=4.2 Score=36.07 Aligned_cols=175 Identities=11% Similarity=0.049 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -..+|.||+.+...-...++.+.+ .++++++++.....
T Consensus 87 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~- 157 (348)
T 3bil_A 87 EIQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK---QGMPVVLVDRELPG- 157 (348)
T ss_dssp HHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH---C-CCEEEESSCCSC-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEEcccCCC-
Confidence 344566788998875432 1222222222222 257899998765433334455544 36789999864311
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. ++..+.......+...++.|.+.. .++|.++.+... ..-+.+.|++.|.+.. + ++.
T Consensus 158 --~~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~-v~~--- 222 (348)
T 3bil_A 158 --DS------TIPTATSNPQPGIAAAVELLAHNN--ALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ-L-VFL--- 222 (348)
T ss_dssp --C-------CCCEEEEECHHHHHHHHHHHHHTT--CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC-E-EEC---
T ss_pred --CC------CCCEEEeChHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc-E-EEc---
Confidence 02 332222212223445666676643 468999988743 2346678888886322 1 121
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.+...+ +..+. + ..+ +|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 223 ~~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D~~ 279 (348)
T 3bil_A 223 GGYEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFDTH 279 (348)
T ss_dssp CCSSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeCCc
Confidence 122221 12222 2 236 7777777777777777766542 36677777653
No 94
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=87.95 E-value=4.9 Score=31.09 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEecee----------------EeeeCC--CchHHHHHHhcCCCccEEEEeCh
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI----------------QHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~----------------~~~~~~--d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
+++|+|+-...-+..+++.|.+.|.++..+-.- .+...+ +.+.+.+. .+.+.|+||.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEecC
Confidence 467888876666778888888888887755221 111111 11222222 3678999999876
Q ss_pred HHHHHH-H-HHHHHcCCCCceEEE--EchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 112 EAGSVF-L-EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 112 ~av~~f-~-~~l~~~~~~~~~i~a--vG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
+.-... . ..+++.. +..++++ -++...+.|++. |....+.|....++.++..+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 543332 2 2233322 3345554 466777888887 987666666666666666554
No 95
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.99 E-value=4.4 Score=32.34 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhC-CCcEEEece------------eEeeeCCCchHHHHHHhc---CCCccEEEEeC
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPL------------IQHAQGPDTDRLSSVLNA---DTIFDWIIITS 110 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~------------~~~~~~~d~~~l~~~l~~---l~~~d~IiftS 110 (301)
++.+++|+|.-...-+..+++.|.+. |+++..+-. ...... |.... +.+.. +.+.|+||.++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~-~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISG-DATDP-DFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEEC-CTTCH-HHHHTBCSCCCCCEEEECC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEc-CCCCH-HHHHhccCCCCCCEEEEeC
Confidence 46678899997666778899999998 998876521 111111 11111 12222 56799999987
Q ss_pred hHHH--HHHHHHHHHcCCCCceEEE--EchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 111 PEAG--SVFLEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 111 ~~av--~~f~~~l~~~~~~~~~i~a--vG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
++.- ......+...+ +..++++ .++...+.+++. |....+.|....+..+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRN-YKGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp SSHHHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHH
Confidence 7532 23334454444 2445544 456677788888 988766776655666666543
No 96
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=86.65 E-value=14 Score=31.39 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~a--v~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..... ....+.+...+.++. -...|.||+.+... ....++.+.+ .++++++++....
T Consensus 22 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 95 (288)
T 1gud_A 22 GIEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKID 95 (288)
T ss_dssp HHHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEECCCCC
Confidence 345567788988775421 011222221222222 25799999976532 2223444444 3689999987532
Q ss_pred -HHHHHHhhcccCCCce-eec-CCCC-cHHHHHHHhccC-CCCCCEEEEEcCCcCh-------hHHHHHHHhC-CCeeEE
Q 022176 140 -SIFEEVIQSSKCSLDV-AFS-PSKA-TGKILASELPKN-GKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (301)
Q Consensus 140 -~~L~~~~~~~~~G~~~-~~~-p~~~-~~e~L~~~l~~~-~~~~~~vLi~rg~~~~-------~~L~~~L~~~-G~~v~~ 206 (301)
...++. |... ..+ .+.+ .+...++.|.+. ....++|.++.|.... .-+.+.|++. |..+..
T Consensus 96 ~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~ 169 (288)
T 1gud_A 96 MDNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 169 (288)
T ss_dssp HHHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE
Confidence 222333 4322 222 2222 233345555543 1013689999876432 2366778777 765432
Q ss_pred EeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022176 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (301)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~T 264 (301)
++ ......+ + +++....+++|+.++-..+-..++.+.+.+. .++.++.++..-
T Consensus 170 --~~---~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~~dv~vvGfD~~~ 230 (288)
T 1gud_A 170 --SQ---PADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIP 230 (288)
T ss_dssp --EE---ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCH
T ss_pred --ee---cCCccHHHHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCCCCeEEEEeCCCH
Confidence 21 1222222 1 2222246899999998888888887776553 367888886543
No 97
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=86.60 E-value=0.99 Score=39.95 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..... ..+.+...+.++. -.+.|.||+.+...-..+.+.+.+ .+++++.+|....
T Consensus 83 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 152 (339)
T 3h5o_A 83 GIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ---HALPVVYMMDLAD-- 152 (339)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH---TTCCEEEEESCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeecCC--
Confidence 455677788988764321 1222222222222 368999999875443334444544 3678888875321
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
.. .. . +..+. ..+...++.|.+. ..++|.++.+... ..-+.+.|++.|.......... .
T Consensus 153 --~~------~~-~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~--~ 218 (339)
T 3h5o_A 153 --DG------RC-C-VGFSQEDAGAAITRHLLSR--GKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLD--P 218 (339)
T ss_dssp --SS------CC-E-EECCHHHHHHHHHHHHHHT--TCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEE--C
T ss_pred --CC------Ce-E-EEECHHHHHHHHHHHHHHC--CCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEe--c
Confidence 11 22 1 22222 2344455666665 3468998877642 2346677888887221111111 1
Q ss_pred CCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 215 VHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 215 ~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
.....+ + +++....+|+|+..+-..+-..++.+.+.+. .++.++.++.
T Consensus 219 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvgfD~ 276 (339)
T 3h5o_A 219 QPSSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAVPERLAIAGFND 276 (339)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 122211 1 2222247899999988887777777776542 2566665543
No 98
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=86.46 E-value=3.8 Score=34.87 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..+.. ..+.+...+.++. ..++|.||+.+.. .....++.+.+ .++++++++....
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 94 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIFDS-----QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKE---AGIPVFCVDRGIN 94 (290)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 345567788988764321 1222221222222 2579999987543 22234444544 3678999886431
Q ss_pred HHHHHHhhcccCCCcee-ecCCC-CcHHHHHHHhccC-C--C-CCCE--EEEEcCCcC-------hhHHHHHHHhC-CCe
Q 022176 140 SIFEEVIQSSKCSLDVA-FSPSK-ATGKILASELPKN-G--K-KKCT--VLYPASAKA-------SNEIEEGLSNR-GFE 203 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~-~~p~~-~~~e~L~~~l~~~-~--~-~~~~--vLi~rg~~~-------~~~L~~~L~~~-G~~ 203 (301)
.. +.... +..+. ..+..+++.|.+. . . ..++ |+++.+... ..-+.+.|++. |.+
T Consensus 95 ----~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~ 164 (290)
T 2fn9_A 95 ----AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK 164 (290)
T ss_dssp ----CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE
T ss_pred ----CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE
Confidence 11 21111 12222 2234445555443 1 0 1245 888877543 22356777777 765
Q ss_pred eEEEeeeeeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH
Q 022176 204 VVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (301)
Q Consensus 204 v~~~~vY~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~ 262 (301)
+.. ++. .....+ + +++....+|+|+..+-..+..+++.+.+.+..++.++.++.
T Consensus 165 ~~~--~~~---~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 165 MVA--QQS---AEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp EEE--EEE---CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred EEE--ecc---CCCCHHHHHHHHHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 532 221 122221 1 12222468999999988877787777765434667777654
No 99
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=86.26 E-value=8.3 Score=28.44 Aligned_cols=110 Identities=22% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHHHHhhhcccCC
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTEQW 253 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~~~~l~~~~~~ 253 (301)
.+.+||++-.+.. +..|.+.|+..|+.|. .+.. ..+.+.. ...+|+|+ ......-.+++.++.. .
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~~------~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~--~ 84 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD---VTES------LEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK--H 84 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE---EESC------HHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH--S
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE---EeCC------HHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc--C
Confidence 4578999887765 5678888998887543 1111 1222222 25789888 3332333445555443 3
Q ss_pred -CceEEEECH----HHHHHHHHcCCCeeEecCCC-CHHHHHHHHHHHHHccC
Q 022176 254 -SNSVACIGE----TTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALREHG 299 (301)
Q Consensus 254 -~~~i~aIG~----~Ta~al~~~G~~~~~v~~~p-s~e~ll~ai~~~~~~~~ 299 (301)
.++++.++. .....+.+.|... ++.... +.+.|.+.|...++.++
T Consensus 85 ~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~~l~~~i~~~~~~~~ 135 (137)
T 2pln_A 85 SSIVVLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRFWG 135 (137)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCSCHHHHHHHHHHHTC---
T ss_pred CCccEEEEeCCCCHHHHHHHHHcCCce-eeeCCCCCHHHHHHHHHHHHhhhc
Confidence 566666643 3445556678765 556666 89999999988876543
No 100
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=86.00 E-value=3.6 Score=35.27 Aligned_cols=191 Identities=8% Similarity=0.013 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..+- ....+.+...+.++. -.++|.||+.+.. .....++.+.+ .++++++++...
T Consensus 25 g~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~- 96 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG----PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD---AGIVVLTNESPG- 96 (303)
T ss_dssp HHHHHHHHTTEEEEEEC----CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHH---TTCEEEEESCTT-
T ss_pred HHHHHHHHcCCEEEEEC----CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCC-
Confidence 34556778897765321 011222222222222 2579999887543 33334454544 468999998651
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCC-EEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeee
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC-TVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~-~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (301)
.... ++.. +..+. ..+..+++.|.+.. ..+ +++++.|.... .-+.+.|++.|..+..+..+
T Consensus 97 --~~~~------~~~~-v~~d~~~~g~~a~~~l~~~~-g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~ 166 (303)
T 3d02_A 97 --QPSA------NWDV-EIIDNEKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRR 166 (303)
T ss_dssp --CTTC------SEEE-ESSCHHHHHHHHHHHHHHHT-TTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSC
T ss_pred --CCCC------ceEE-EecCHHHHHHHHHHHHHHHh-CcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEee
Confidence 1111 2221 12222 22444556666521 223 89988876432 23556676655333222211
Q ss_pred eeeeCCCCcH---HH----HHHcCCCCEEEEEChHHHHHHHHhhhcccC-CCceEEEECHH--HHHHHHHcCCC
Q 022176 211 TTEPVHHVDQ---TV----LKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKRLGLK 274 (301)
Q Consensus 211 ~~~~~~~~~~---~~----~~~~~~~d~I~ftS~sav~~~~~~l~~~~~-~~~~i~aIG~~--Ta~al~~~G~~ 274 (301)
.......+ .. +....++|+|+..+-..+..+++.+.+.+. .++.++.++.. ..+.+.+-.+.
T Consensus 167 --~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~lt 238 (303)
T 3d02_A 167 --MPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDIT 238 (303)
T ss_dssp --BSCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTSSC
T ss_pred --cCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCCeE
Confidence 01122221 11 211236788888886666667777766543 26778888653 45666543443
No 101
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=85.76 E-value=9.2 Score=35.53 Aligned_cols=190 Identities=11% Similarity=0.065 Sum_probs=104.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceE-EEEc-hhhHH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVG-AGTAS 140 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i-~avG-~~Ta~ 140 (301)
.++.+.|++.|+++..++... ..+ .+.++.....-+..++.. ....+.+++.+.+-+.. +-+| ..|.+
T Consensus 198 ~eik~lL~~~Gi~v~~~~~~~-----~~~----ei~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~i~~~~P~G~~~T~~ 267 (437)
T 3aek_A 198 DQCLSLLTQLGVGPVRMLPAR-----RSD----IEPAVGPNTRFILAQPFL-GETTGALERRGAKRIAAPFPFGEEGTTL 267 (437)
T ss_dssp HHHHHHHHHTTCCCEEEESCS-----SGG----GCCCBCTTCEEEESSTTC-HHHHHHHHHTTCEECCCCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEcCCC-----CHH----HHHhhhcCcEEEEECccH-HHHHHHHHHcCCCeEecCCCcCHHHHHH
Confidence 699999999999999776432 122 234567777777777766 55566664444432332 2266 56777
Q ss_pred HHHHHhhcccCCCceeecCCCC---cHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHH-HhCCCeeEEEee-eeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKA---TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNT-YTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~---~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L-~~~G~~v~~~~v-Y~~~ 213 (301)
.|++.. ...|...... +.. --+.+...+.... ..|+|+++..+..-.-.|...| .+.|.+|..+-+ |...
T Consensus 268 ~l~~la--~~~g~~~~~~-e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~ 344 (437)
T 3aek_A 268 WLKAVA--DAYGVSAEKF-EAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEIATPFLHK 344 (437)
T ss_dssp HHHHHH--HHTTCCHHHH-HHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEEEESCCCH
T ss_pred HHHHHH--HHHCCChhhH-HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcCCEEEEEEecCCCH
Confidence 777762 1113322100 000 0111223332211 2678999998877778899999 999999876655 2211
Q ss_pred eCCCCcHHHHHHcCCCCEEEEE--ChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 214 PVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ft--S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
....+.++.+ ..+..+.. .......+++.. ...++.-|...+..+.+.|+..
T Consensus 345 ---~~~~~~l~~l-~~~~~v~~~~d~~e~~~~i~~~------~pDliig~~~~~~p~~~~G~P~ 398 (437)
T 3aek_A 345 ---AIMAPDLALL-PSNTALTEGQDLEAQLDRHEAI------NPDLTVCGLGLANPLEAKGHAT 398 (437)
T ss_dssp ---HHHHHHHTTS-BTTCEEEEECCHHHHHHHHHHH------CCSEEEECHHHHHHHHTTTCCE
T ss_pred ---HHHHHHHHhc-CCCCEEEeCCCHHHHHHHHhcc------CCCEEEeCCccccHHHHCCCCE
Confidence 1011122222 22444443 333333333322 2344555666667788889874
No 102
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=85.32 E-value=1.2 Score=39.96 Aligned_cols=171 Identities=11% Similarity=0.020 Sum_probs=94.4
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCC
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC 179 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~ 179 (301)
-...|.||+.+...-...++.+.+ .+++++++|... ... ++..+.......+...++.|.+.. .+
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~----~~~------~~~~V~~D~~~~~~~a~~~L~~~G--~r 190 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRA---RGLPAVIADQPA----REE------GMPFIAPNNRKAIAPAAQALIDAG--HR 190 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHH---HTCCEEEESSCC----SCT------TCCEEEECHHHHTHHHHHHHHHTT--CC
T ss_pred hCCCCEEEEecCCCChHHHHHHHH---CCCCEEEECCcc----CCC------CCCEEEeChHHHHHHHHHHHHHCC--CC
Confidence 367999999876433344554544 367899998743 112 333222211223444556676643 46
Q ss_pred EEEEEcCC---------c---------------ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH-------HHHHHcCC
Q 022176 180 TVLYPASA---------K---------------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ-------TVLKQALS 228 (301)
Q Consensus 180 ~vLi~rg~---------~---------------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-------~~~~~~~~ 228 (301)
+|.++.+. . ...-+.+.|+++|..+....++... ....+ .+++....
T Consensus 191 ~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~ 268 (366)
T 3h5t_A 191 KIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECW--INNRQHNFEVAKELLETHPD 268 (366)
T ss_dssp SEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEES--SCCHHHHHHHHHHHHHHCTT
T ss_pred cEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcC--CCCHHHHHHHHHHHHcCCCC
Confidence 78888721 0 1235778888888775432232211 12211 12222247
Q ss_pred CCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHH
Q 022176 229 IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILE 293 (301)
Q Consensus 229 ~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~ 293 (301)
+|+|+..+-..+-..++.+.+.+. .++.++.++..-... ..++..+. .+.+.|.+...+
T Consensus 269 ~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~~~~~~--~~~lttv~----q~~~~~G~~Av~ 330 (366)
T 3h5t_A 269 LTAVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDGTHMAL--ARDLTTVI----QPNKLKGFKAGE 330 (366)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCHHHH--HTTCCEEE----CCHHHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCChhhc--CCCccEEE----eCHHHHHHHHHH
Confidence 899999998888777777776653 367788776533222 34554332 345555444433
No 103
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=85.11 E-value=7.7 Score=33.59 Aligned_cols=167 Identities=10% Similarity=0.022 Sum_probs=83.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
-+.+.++++|+++..+. ...+.+...+.++. -.++|.||+++..--..+.+ +. ...++++++.++...
T Consensus 28 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~-~~~p~~p~v~id~~~--- 97 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEE-----GVNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IH-NQYPDVHFVSFNGEV--- 97 (296)
T ss_dssp HHHHHHHHSCCEEEEEC-----CCCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TT-TSCTTSEEEEESCCC---
T ss_pred HHHHHHHHhCCeEEEEe-----CCCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HH-HHCCCCEEEEEecCc---
Confidence 44556778898776432 11221222223322 25799999988654333222 11 122478999998632
Q ss_pred HHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC---hhHHHHHHHhCCCeeEEEeeeeeeeCCCC
Q 022176 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 218 (301)
... ++.. +....+.+.-++-.+..+..+.++|.++.|... ..-+.+.+++.|.. ....+|........
T Consensus 98 -~~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 98 -KGE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp -CSS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred -CCC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 111 3322 222333333333222222123479999987643 23467788888875 43334432111111
Q ss_pred cH-HHHHH-c-CCCCEEEEEChHHHHHHHHhhhc
Q 022176 219 DQ-TVLKQ-A-LSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 219 ~~-~~~~~-~-~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
.. +..+. + ..+|+|+..+-..+-..++.+++
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~Gv~~a~~e 202 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHVPVVEAIKD 202 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHH
Confidence 11 12222 2 36898888877655555555544
No 104
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=84.37 E-value=7.7 Score=29.28 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=55.2
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH---------HHHHHHHhhhcccCCCceEEEEC
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVACIG 261 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s---------av~~~~~~l~~~~~~~~~i~aIG 261 (301)
+.+.+.|.+.|++|..+.+-+. .. ..+.++|.|+|-||. .++.|++.+... ..+.+++++|
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~-----~~----~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~ 86 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV-----NI----DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFG 86 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC-----CH----HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC-----CH----HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEE
Confidence 4566677788877654443221 11 135678988888772 588888887642 2233433332
Q ss_pred ----------HHHHHHHHHcCCCee----EecCCCCHHHHHHHHHHHHH
Q 022176 262 ----------ETTASAAKRLGLKNV----YYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 262 ----------~~Ta~al~~~G~~~~----~v~~~ps~e~ll~ai~~~~~ 296 (301)
....+.|++.|++.+ .+-..|+.++ +.+.++-+
T Consensus 87 t~g~~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d--~~~~~~~~ 133 (138)
T 5nul_A 87 SYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE--QDCIEFGK 133 (138)
T ss_dssp EESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH--HHHHHHHH
T ss_pred ecCCCCChHHHHHHHHHHHCCCEEECCceEEecCCCHHH--HHHHHHHH
Confidence 234455667788642 3445687777 67766644
No 105
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=84.22 E-value=9.9 Score=30.21 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC---CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022176 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l---~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~av 134 (301)
+.+...++.+.|+++|+.+..+.-- +........++.+ ..+|.++..+..-...|...+++.+.+.-.++.|
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT~~-----~~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAASRT-----SEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEECC-----SCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEeCC-----CChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 3456778889999999876543211 1112233334332 3477776666666677777777777766778899
Q ss_pred chhhHH--HHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 135 GAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 135 G~~Ta~--~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
|..... ++++. |+.+..+...++.+.+.+.|..
T Consensus 144 gD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~ 178 (187)
T 2wm8_A 144 DDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLET 178 (187)
T ss_dssp ESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHH
T ss_pred eCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHH
Confidence 988654 34445 9988777777777776665543
No 106
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=84.05 E-value=5.4 Score=31.81 Aligned_cols=109 Identities=7% Similarity=-0.017 Sum_probs=61.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHH
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSW 243 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~ 243 (301)
...+++.|.+. |.++.++.+..........|+..|+.- -+|.++..+..-.+.|
T Consensus 73 ~~e~L~~L~~~---G~~v~ivT~~~~~~~~~~~l~~~gl~~-----------------------~f~~~~~~~~~k~~~~ 126 (187)
T 2wm8_A 73 VPEVLKRLQSL---GVPGAAASRTSEIEGANQLLELFDLFR-----------------------YFVHREIYPGSKITHF 126 (187)
T ss_dssp HHHHHHHHHHH---TCCEEEEECCSCHHHHHHHHHHTTCTT-----------------------TEEEEEESSSCHHHHH
T ss_pred HHHHHHHHHHC---CceEEEEeCCCChHHHHHHHHHcCcHh-----------------------hcceeEEEeCchHHHH
Confidence 34444555542 456666665543455566666666431 1122211222222334
Q ss_pred HHhhhcccCCCceEEEECHHHHH--HHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 244 VNLISDTEQWSNSVACIGETTAS--AAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 244 ~~~l~~~~~~~~~i~aIG~~Ta~--al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
...+++.+...-.++.||..... +++..|+..+.+....+.+.+.+.+.++....
T Consensus 127 ~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~~~~~~ 183 (187)
T 2wm8_A 127 ERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAKAQ 183 (187)
T ss_dssp HHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECSSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCChHHEEEEeCCccChHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhc
Confidence 44444333222356678776544 57789999888888888999999988876543
No 107
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=83.68 E-value=3.9 Score=35.85 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=93.4
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEE-chhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~av-G~~Ta 139 (301)
.+.+.++++|+++..... ......+.+...+.++. -.++|.||+.+.. .....++.+.+. +++++++ +....
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~~~ 140 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNITTP 140 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCCSC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCCCc
Confidence 445567788988764321 11100122211222222 2579999984322 223344445442 5667666 54210
Q ss_pred -HHHH-HHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeee
Q 022176 140 -SIFE-EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 140 -~~L~-~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY 210 (301)
..+. .. ++.. +..+. ..+..+++.|.+.....++|+++.+... ..-+.+.|++.|. +....++
T Consensus 141 ~~~~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~ 212 (342)
T 1jx6_A 141 VREWDKHQ------PFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAY 212 (342)
T ss_dssp BGGGTTSC------CSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEE
T ss_pred ccccccCC------CceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEe
Confidence 0000 11 2222 22222 2244456666653112478999988754 2346677777775 3333232
Q ss_pred eeeeCCCCcH---H----HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHH
Q 022176 211 TTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 264 (301)
Q Consensus 211 ~~~~~~~~~~---~----~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~T 264 (301)
. .....+ . ++....++|+|+..+-..+-.+++.+.+.+..++.++.++...
T Consensus 213 ~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~di~vvg~D~~~ 270 (342)
T 1jx6_A 213 Y---TKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGS 270 (342)
T ss_dssp C---CCSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHHHHHHHTCTTSEEBCSBCCH
T ss_pred c---CCCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 2 122221 1 2222246899999998877777777766543356777776554
No 108
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=83.32 E-value=8.7 Score=32.95 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-----~av~~f~ 118 (301)
.+++|++..+.+ ...-++..|+.+|++|+++..- .|. +.+...... .+.|.|.+.+. ..+..+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp~---e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHH
Confidence 356777765543 2346677899999999988763 232 344444422 47888888763 3355566
Q ss_pred HHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
+.+++.+.+ +++++-|....+.+.+.+ |... +.++...+-.++..+.
T Consensus 196 ~~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad~-~~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGGAVNQDFVSQF-----ALGV-YGEEAADAPKIADAII 242 (258)
T ss_dssp HHHHTTTCC-CCEEEESTTCCHHHHHTS-----TTEE-ECSSTTHHHHHHHHHH
T ss_pred HHHHhcCCC-CcEEEECccCCHHHHHHc-----CCeE-EECCHHHHHHHHHHHH
Confidence 777666654 999999987655554432 6432 4444444444444443
No 109
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=82.42 E-value=5.4 Score=32.97 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHH
Q 022176 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-----av~~f~~ 119 (301)
+.+|++..+.+ ...-++..|+.+|++|.++..- .| .+.+.+.+.. .+.|.|.+++.. .++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~--vp---~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD--IE---PGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS--BC---HHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEeccccccHHHHHHHHH
Confidence 45677654442 2356777899999999988741 21 2445445433 478888887743 3555666
Q ss_pred HHHHcCC-CCceEEEEchhhHHHHHHH
Q 022176 120 AWKEAGT-PNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 120 ~l~~~~~-~~~~i~avG~~Ta~~L~~~ 145 (301)
.+++.+. +++++++-|....+.+.+.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~ 188 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADE 188 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHH
Confidence 7776665 4799999998766555443
No 110
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=81.34 E-value=17 Score=36.30 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-----av~~f~ 118 (301)
+..+|++..... +..-.+..|+..|++|+..+.... .+++.+.. .-.+.|.|.+.|.. .+..+.
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA-~e~~adiVglSsl~~~~~~~~~~vi 676 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT-----PREVAQQA-VDADVHAVGVSTLAAGHKTLVPELI 676 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC-----HHHHHHHH-HHTTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCC-----HHHHHHHH-HHcCCCEEEEeeecHHHHHHHHHHH
Confidence 456788765543 223556689999999998765422 13333333 23578888887733 445567
Q ss_pred HHHHHcCCCCceEEEEc--hhh-HHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 119 EAWKEAGTPNVRIGVVG--AGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG--~~T-a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
+.+++.+..++++++=| +.. .+.+++. |+...+.|.. +..+.++.+.
T Consensus 677 ~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pgt-d~~e~~~~i~ 726 (762)
T 2xij_A 677 KELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPGT-RIPKAAVQVL 726 (762)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTTC-CHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCCC-CHHHHHHHHH
Confidence 77888888778877766 343 6778888 9987666543 4544444443
No 111
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=81.29 E-value=4.5 Score=35.81 Aligned_cols=174 Identities=9% Similarity=0.040 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEchhhHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~avG~~Ta~ 140 (301)
.+.+.++++|+++..... . ..+.+...+.++. -.+.|.||+.++. .-......+. ..+++++.++...
T Consensus 82 gi~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~---~~~iPvV~i~~~~-- 152 (349)
T 1jye_A 82 AILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAA---CTNVPALFLDVSD-- 152 (349)
T ss_dssp HHHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHH---TTTSCEEESSSCT--
T ss_pred HHHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHh---hCCCCEEEEcccC--
Confidence 345566788998765321 1 1111221222222 3679999987432 2122222222 2468899998532
Q ss_pred HHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. ++..+.......+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+.. ++.
T Consensus 153 ---~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~-- 217 (349)
T 1jye_A 153 ---QT------PINSIIFSHEDGTRLGVEHLVALG--HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--ERE-- 217 (349)
T ss_dssp ---TS------SSCEEEECHHHHHHHHHHHHHHHT--CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEE--
T ss_pred ---CC------CCCEEEEchHHHHHHHHHHHHHCC--CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--ccc--
Confidence 12 332222211122334455665542 4689999886432 3467788888875432 121
Q ss_pred eCCCCcH---HHHHH-c---CCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECH
Q 022176 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (301)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~ 262 (301)
.+...+ +.... + ..+|+|+..+-..+-.+++.+.+.+. .++.++.++.
T Consensus 218 -~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvvGfD~ 275 (349)
T 1jye_A 218 -GDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDD 275 (349)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCBTTTBEEECSBC
T ss_pred -CCCChHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCcEEEEEECC
Confidence 122221 11111 2 36899999988877777777766542 2455555543
No 112
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=80.44 E-value=15 Score=26.96 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=65.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~ 124 (301)
....+++|||.-... ....+...|++.|+++.. ..+..+....+.. ..+|.|+....++.+ +++.+.+.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~--------~~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~~~ 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADV--------TESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIKEK 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEE--------ESCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHHHH
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEE--------eCCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHHhc
Confidence 445678899887654 446778889888875442 1222333344433 578999944445554 56666665
Q ss_pred CCC-CceEEEEchhh-HHHHHHHhhcccCCCceeecCCCC-cHHHHHHHhccC
Q 022176 125 GTP-NVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (301)
Q Consensus 125 ~~~-~~~i~avG~~T-a~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~ 174 (301)
. +++++++.... .....+.+.. |.. +++.... +.+.|...+...
T Consensus 84 --~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 --HSSIVVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp --STTSEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred --CCCccEEEEeCCCCHHHHHHHHHc---CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 4 67777765432 2322222111 554 3556667 888887777543
No 113
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=80.41 E-value=9.3 Score=33.55 Aligned_cols=148 Identities=18% Similarity=0.026 Sum_probs=82.8
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iif-tS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
.+.+.||- .+..........+.+. +++++..+..+...-... ..-..+.|.. ..+..+++.+.+. ..
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~--g~ 139 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGTSIITERS------PYIVRTSFTLAQSSIIIGDWAAKN--GI 139 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCGGGGGGC------TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCChhhccCC------CCEEEecCChHHHHHHHHHHHHHc--CC
Confidence 67888883 4555555566666553 567777654332211111 2211123332 2244566666654 34
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f-tS~sav~~~~~~l~~~ 250 (301)
++|.++..+.. .+.+.+.|++.|.++.....|.... .+ ....+..+ ..+|+|++ .+...+..+++.+.+.
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d-~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~ 217 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PD-FAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAER 217 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CC-CHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-Cc-HHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHc
Confidence 68877765432 3567888999999876655554322 12 22223222 46888887 6666777777777665
Q ss_pred cCC--CceEEEEC
Q 022176 251 EQW--SNSVACIG 261 (301)
Q Consensus 251 ~~~--~~~i~aIG 261 (301)
+.. +++++..+
T Consensus 218 g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 218 GLDKSGIKVIGPG 230 (368)
T ss_dssp TGGGTTCEEEEET
T ss_pred CCCcCCceEEecC
Confidence 432 26677665
No 114
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=79.83 E-value=25 Score=30.93 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=89.2
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCCc
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~~~ 129 (301)
++|+++.+-. +...+.|++.|+++...+.- ..+.+++.+ .+.++|.++..+...+ ..+++.+ +++
T Consensus 1 ~~vl~~~~~~--~~~~~~l~~~g~~v~~~~~~----~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLP--GKALDRLRERGLEVEVHRGL----FLPKAELLK---RVEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCS--SSTTHHHHHTTCEEEECCSS----CCCHHHHHH---HHTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCC--HHHHHHHHhcCCeEEEecCC----CCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 4688876543 22346778888776543211 112233333 3578899876543222 1223322 345
Q ss_pred eEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h-c------------cC----------
Q 022176 130 RIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-P------------KN---------- 174 (301)
Q Consensus 130 ~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l-~------------~~---------- 174 (301)
|+++ +|-. -.+++++. |+.+.-.|. .+++.+++. + . .|
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 5554 2211 23566777 888766654 333333221 1 0 01
Q ss_pred -CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC--CcHHHHHHcCCCCEEEEEChHH
Q 022176 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 175 -~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~I~ftS~sa 239 (301)
...+++|.++....-...+.+.|+..|.+| .+|++.+... ....+.+.+.+.|+|++.-|..
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRV---VYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEE---EEECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 126778999988888889999999999865 4555433221 0111112234679888886554
No 115
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=79.74 E-value=19 Score=36.04 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHH
Q 022176 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVN 245 (301)
Q Consensus 178 ~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-----av~~~~~ 245 (301)
..+|++..-.. +...+...|+..|++|....+ ...++++.+.. .+.|+|+++|.. .+..+.+
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL------FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT------TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHH
Confidence 35777644332 245677899999998854332 22334444432 588999998733 4455566
Q ss_pred hhhcccCCCceEEEEC--HHH-HHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 246 LISDTEQWSNSVACIG--ETT-ASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 246 ~l~~~~~~~~~i~aIG--~~T-a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
.+++.+..++++++=| |.. .+.+++.|+..++. ...+...+++.+.+.++
T Consensus 678 ~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~-pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 678 ELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFG-PGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEEC-TTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEeC-CCCCHHHHHHHHHHHHH
Confidence 6665544466776655 443 67789999988664 44588888888887763
No 116
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=79.66 E-value=3 Score=36.18 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=45.6
Q ss_pred CCeEEEeCC---CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC-------hHHHHHHHH
Q 022176 50 NPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-------PEAGSVFLE 119 (301)
Q Consensus 50 g~~IlitR~---~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS-------~~av~~f~~ 119 (301)
+++||+.-. ...+..+.+.|++.|++|..++.-.+-. +.+ .+.+||.||+.. +..++.+.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~-------~L~~yDvIIl~d~~~~~l~~~~~~~L~~ 74 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGE-------LLAKQDLVILSDYPAERMTAQAIDQLVT 74 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSH-------HHHTCSEEEEESCCGGGBCHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccccc--Chh-------HHhcCCEEEEcCCccccCCHHHHHHHHH
Confidence 578888743 3466789999999999998877544321 111 357899999974 333444444
Q ss_pred HHHHcCCCCceEEEEch
Q 022176 120 AWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~ 136 (301)
+.. .+--++++|.
T Consensus 75 yV~----~GGgLi~~gG 87 (259)
T 3rht_A 75 MVK----AGCGLVMLGG 87 (259)
T ss_dssp HHH----TTCEEEEECS
T ss_pred HHH----hCCeEEEecC
Confidence 443 2455666654
No 117
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=79.44 E-value=2.1 Score=36.49 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEecee-EeeeCCCchHHHHHHhcCCCccEEEEeChHHHH--HHHHHHHHcCCCCceEEEEchhhH
Q 022176 63 GKLIKALAKHRIDCLELPLI-QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS--VFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~-~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~--~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
..+.+.++++|+++..+..- ...+......++..+ -.++|.||+.+...-. ..++.+.+ .+++++.++....
T Consensus 27 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~--~~~vdgii~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 101 (289)
T 3brs_A 27 EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAI--KRKPDVILLAAADYEKTYDAAKEIKD---AGIKLIVIDSGMK 101 (289)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHH--HTCCSEEEECCSCTTTTHHHHTTTGG---GTCEEEEESSCCS
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH--HhCCCEEEEeCCChHHhHHHHHHHHH---CCCcEEEECCCCC
Q ss_pred HHHHHHhhcccCC-CceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhH-------HHHHHHhCCCeeEEEeeee
Q 022176 140 SIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE-------IEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 140 ~~L~~~~~~~~~G-~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~-------L~~~L~~~G~~v~~~~vY~ 211 (301)
. . + +..........+..+++.|.+.....++|+++.+...... +.+.+++.|..+.. ++.
T Consensus 102 ~----~------~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~ 169 (289)
T 3brs_A 102 Q----D------IADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IYY 169 (289)
T ss_dssp S----C------CCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EEE
T ss_pred C----C------cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--eec
Q ss_pred eeeCCCCcHHHHHHc----CCCCEEEEEChHHHHHHHHhhhcccCC-CceEEEEC
Q 022176 212 TEPVHHVDQTVLKQA----LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIG 261 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~----~~~d~I~ftS~sav~~~~~~l~~~~~~-~~~i~aIG 261 (301)
.........+....+ ..+|+|+.++-..+..+++.+.+.+.. ++.+++++
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vvg~d 224 (289)
T 3brs_A 170 CDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCID 224 (289)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEECCCcchHHHHHHHHhcCCCCCEEEEEEC
No 118
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=79.16 E-value=18 Score=27.27 Aligned_cols=111 Identities=5% Similarity=0.028 Sum_probs=68.4
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhccc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE 251 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~~ 251 (301)
..+||++-.+.. +..|.+.|++.|+.|... . ...+.++.+ ..+|+|++--. ...-.+++.++...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~---~------~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHV---R------NGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE---S------SHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 468999988765 567888999888754221 1 122333333 47898888532 11223444444332
Q ss_pred -CCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 252 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 252 -~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
..++++++++ +.....+.+.|... ++....+.+.|.+.|...++..
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 78 DLRTIPVILLTILSDPRDVVRSLECGADD-FITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp TTTTSCEEEEECCCSHHHHHHHHHHCCSE-EEESSCCHHHHHHHHHHHHHHT
T ss_pred CcCCCCEEEEECCCChHHHHHHHHCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 1356666654 34445556678765 6677789999999999887654
No 119
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=79.08 E-value=9.5 Score=33.24 Aligned_cols=172 Identities=8% Similarity=0.061 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
.+.+.++++|+++..+.. ..+.+...+.++. -.++|.|| .+...-. +.+ ...+++++.++.....
T Consensus 81 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l---~~~~iPvV~~~~~~~~- 147 (330)
T 3ctp_A 81 VIEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEY---ANIDIPVVAFENHILD- 147 (330)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGG---TTCCSCEEEESSCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHH---HhcCCCEEEEeccCCC-
Confidence 344566788988765421 1232222222222 25799998 5432111 112 1247889999865321
Q ss_pred HHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEeeeeee
Q 022176 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 142 L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.. . . +..+. ..+...++.|.+. ..++|.++.+.... .-+.+.|++.|..+. ..++...
T Consensus 148 --~~------~--~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~ 213 (330)
T 3ctp_A 148 --NI------I--T-ISSDNYNGGRMAFDHLYEK--GCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHD 213 (330)
T ss_dssp --TS------C--E-EEECHHHHHHHHHHHHHHT--TCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSS
T ss_pred --CC------C--E-EEeCHHHHHHHHHHHHHHC--CCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCC
Confidence 11 1 1 11222 2234455666664 34689998876431 246678889998765 3333211
Q ss_pred eCCC----CcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccC---CCceEEEECHH
Q 022176 214 PVHH----VDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (301)
Q Consensus 214 ~~~~----~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~---~~~~i~aIG~~ 263 (301)
.... ...++++. ..+|+|+..+-..+-.+++.+.+.+. .++.++.++..
T Consensus 214 ~~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~g~~~al~~~G~~vP~disvvg~D~~ 269 (330)
T 3ctp_A 214 FQVKMLEEDINSMKDI-VNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGFDNS 269 (330)
T ss_dssp CCGGGGGCCCTTGGGG-GGSSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCHHHHHHHHHHHhcC-CCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeEEEEECCh
Confidence 1100 01122222 46899999988877777777766542 25667666543
No 120
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=79.07 E-value=14 Score=30.17 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=65.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------eEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
|+|+|.-...-+..+++.|.+.|.++..+-. ..+... .+.+.+.++ .+.+.|.||.+.++...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~ 78 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDA--EVSKNDVVVILTPRDEV 78 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHH--TCCTTCEEEECCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhc--CcccCCEEEEecCCcHH
Confidence 3566665544556666777777766654321 001111 122223322 36789999998877655
Q ss_pred HHH-HHHHHcCCCCceEEE--EchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 116 VFL-EAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 116 ~f~-~~l~~~~~~~~~i~a--vG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
... ....+...+..++++ -++...+.+++. |....+.|....+..+...+.
T Consensus 79 n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 79 NLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 433 222222224455554 577888899988 998766776666666766653
No 121
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=78.97 E-value=14 Score=32.09 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCcEEEe-ceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.+.+.++++|+++... +. ..+.+...+.++. -.+.|.||+.+.. ++...++.+.+ .++++++++...
T Consensus 24 g~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~---~gipvV~~d~~~ 95 (316)
T 1tjy_A 24 GAQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ---RGVKILTWDSDT 95 (316)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCC
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH---CcCEEEEecCCC
Confidence 3445667789777643 11 1222211122222 2579999987543 33444555544 468999987643
Q ss_pred HHHHHHHhhcccCCCceee-cCCCC-cHHHHHHHhccCCC-CCCEEEEEcCCcCh-------hHHHHHHHhCCCeeEEEe
Q 022176 139 ASIFEEVIQSSKCSLDVAF-SPSKA-TGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~-~p~~~-~~e~L~~~l~~~~~-~~~~vLi~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (301)
.. . +....+ ..+.. .+....+.|.+... ..++|.++.|.... .-+.+.|++.+..+..+.
T Consensus 96 ~~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~ 165 (316)
T 1tjy_A 96 KP----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVT 165 (316)
T ss_dssp CG----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CC----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEE
Confidence 11 1 111112 12221 23344455544211 24689999876442 235566765532332222
Q ss_pred eeeeeeCCCCcHH-------HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH--HHHHHHHcC
Q 022176 209 TYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET--TASAAKRLG 272 (301)
Q Consensus 209 vY~~~~~~~~~~~-------~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~--Ta~al~~~G 272 (301)
.+. ..+..+. ++....++++|+..+-..+...++.+++.+..++.++.++.. ..+.+.. |
T Consensus 166 ~~~---~~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~g~~~al~~~G~~dv~VvG~D~~~~~~~~i~~-g 234 (316)
T 1tjy_A 166 TQF---GYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQR-G 234 (316)
T ss_dssp EEE---CTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTCCSCEEEEBCCHHHHHHHHHH-T
T ss_pred ecc---CCCCHHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHHC-C
Confidence 221 1222221 222224689999888777666666666544125677777653 3444443 6
No 122
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=78.92 E-value=15 Score=32.75 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=90.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCC
Q 022176 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~--G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~ 127 (301)
|+|+++..........+.|++. |+++...+-. .+ ++ ..+.+.++|.++..+...+ ..+++.+.+.
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~--- 69 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PE---TVALAKGADGVVVYQQLDYIAETLQALADN--- 69 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TT---TGGGGTTCSEEEECCSSCBCHHHHHHHHHT---
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HH---HHHHhcCCcEEEEcCCCCCCHHHHHhcccc---
Confidence 6788876555555666677653 6666544321 11 11 1234578999887542221 2345555442
Q ss_pred CceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hc-------------cC--------
Q 022176 128 NVRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-------------KN-------- 174 (301)
Q Consensus 128 ~~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~-------------~~-------- 174 (301)
++|+++ +|-. -.+++++. |+.+.-.|. ++++.+++. +. .+
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 70 GITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred CCeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 244443 2322 13566777 998866664 333332221 10 01
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC------CcHHHHHHcCCCCEEEEEChHH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~I~ftS~sa 239 (301)
...+++|.++.-..-...+.+.|+..|.+|. +|++.+... ....+.+.+.+.|+|++.-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI---TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEE---EECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 1257789999888778899999999998764 454432110 0001111134678888887743
No 123
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=78.77 E-value=11 Score=34.73 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=37.1
Q ss_pred HHHHH--cCCCCEEEEEChHHHHHH--HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeeEecC
Q 022176 221 TVLKQ--ALSIPVVAVASPSAVRSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 221 ~~~~~--~~~~d~I~ftS~sav~~~--~~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~ 280 (301)
.+++. +.+.++|+++.+....+. ...++... .+.+++ +-.+.-...|.+.|...++.+.
T Consensus 59 ~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~ 123 (413)
T 3l9w_A 59 DLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQAGVEKPERET 123 (413)
T ss_dssp HHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHTTCSSCEETT
T ss_pred HHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHCCCCEEECcc
Confidence 34444 367898888877654443 33333322 244444 5588899999999998866444
No 124
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=78.71 E-value=46 Score=31.61 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=108.5
Q ss_pred CchHHHHHHHHhCCCcEEEe-ceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEc-h
Q 022176 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (301)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG-~ 136 (301)
.+..++...|++.|+++..+ | .....++ +.++.....-+..++..-....+.+++ .+.+-+...-+| .
T Consensus 170 gD~~eikrlL~~~Gi~v~~~~p-----gg~t~~e----i~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~ 240 (525)
T 3aek_B 170 DDVAEVTKLLATMGIKVNVCAP-----LGASPDD----LRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVG 240 (525)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEE-----TTCCHHH----HHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHH
T ss_pred hhHHHHHHHHHHCCCeEEEEeC-----CCCCHHH----HHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHH
Confidence 34578999999999999874 2 1122232 346677778888888766667777755 344444445678 6
Q ss_pred hhHHHHHHHhhcccCCCceeecCC-CCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHH-HhCCCeeEEEeeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~-~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L-~~~G~~v~~~~vY~~~~ 214 (301)
.|.+.|++..+ ..|... .+.. ..-..-+...+......|+++++..+..-.-.|...| .+.|.+|..+-.|..
T Consensus 241 ~T~~~Lr~ia~--~~g~~~-~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~~-- 315 (525)
T 3aek_B 241 ATRDFLAEVSK--ITGLPV-VTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYNR-- 315 (525)
T ss_dssp HHHHHHHHHHH--HHCCCC-CCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESCG--
T ss_pred HHHHHHHHHHH--HHCCCH-HHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCch--
Confidence 67777777521 115443 2211 1111111111211223678999886555566789999 799999866555432
Q ss_pred CCCCcHH---HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCee
Q 022176 215 VHHVDQT---VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (301)
Q Consensus 215 ~~~~~~~---~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~ 276 (301)
...+. .++.. ..++++......++.++... ...++.-|..-...+++.|+...
T Consensus 316 --~~~~~~~~~~~~~-~~~v~i~~D~~el~~~i~~~------~pDL~ig~~~~~~~a~~~giP~~ 371 (525)
T 3aek_B 316 --EMARPLRTAAAEY-GLEALITDDYLEVEKAIEAA------APELILGTQMERNIAKKLGLPCA 371 (525)
T ss_dssp --GGHHHHHHHHHHT-TCCCEECSCHHHHHHHHHHH------CCSEEEECHHHHHHHHHHTCCEE
T ss_pred --hHHHHHHHHHHhc-CCcEEEeCCHHHHHHHHhhc------CCCEEEecchhHHHHHHcCCCEE
Confidence 11112 22222 22444444554444444333 22344445566666778888643
No 125
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=78.63 E-value=2.3 Score=32.32 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~---------av~~f~~~l~~~~~~~~~i~a 133 (301)
+.+++.|++.|+++..+.+-+.. . .++..+|.|||-||. .++.|++.+... +.+.++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~----~-------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVN----I-------DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCC----H-------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhCC----H-------HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 45556677788877654432221 1 134689999998873 477888877554 56778888
Q ss_pred Ec
Q 022176 134 VG 135 (301)
Q Consensus 134 vG 135 (301)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 126
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=78.06 E-value=22 Score=30.95 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=82.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCch-HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~-~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
-+.+.++++|+++..+.. ....+.. .++..+ -.++|.||+++..--..+.+...+ .++++++.++.....
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~--~~~~dgIi~~~~~~~~~~~~~a~~--~p~~p~v~id~~~~~-- 98 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---STDAEYVPSLSAFA--DENMGLVVACGSFLVEAVIETSAR--FPKQKFLVIDAVVQD-- 98 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHH--HTTCSEEEEESTTTHHHHHHHHHH--CTTSCEEEESSCCCS--
T ss_pred HHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHH--HcCCCEEEECChhHHHHHHHHHHH--CCCCEEEEEcCccCC--
Confidence 445566788988765432 1111211 122222 257999999986543443333322 247889998863210
Q ss_pred HHHhhcccCCCceeecCCCCcHHHH----HHHhccCCCCC--CEEEEEcCCcC------hhHHHHHHHhCCCeeEEEeee
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKIL----ASELPKNGKKK--CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L----~~~l~~~~~~~--~~vLi~rg~~~------~~~L~~~L~~~G~~v~~~~vY 210 (301)
.. .+.. +....+.+.-+ +..|.+ .| ++|.++.|... ..-+.+.+++.|..+....+|
T Consensus 99 -~~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~ 167 (318)
T 2fqx_A 99 -RD------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEV 167 (318)
T ss_dssp -CT------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CC------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 11 2222 22222222223 344544 24 59999987532 223567777878766555455
Q ss_pred eeeeCCCCc-HHHHHH-c-CCCCEEEEEChHHHHHHHHhhh
Q 022176 211 TTEPVHHVD-QTVLKQ-A-LSIPVVAVASPSAVRSWVNLIS 248 (301)
Q Consensus 211 ~~~~~~~~~-~~~~~~-~-~~~d~I~ftS~sav~~~~~~l~ 248 (301)
.....+... .+..+. + ..+|+|+..+-..+-..++.++
T Consensus 168 ~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~Gv~~a~~ 208 (318)
T 2fqx_A 168 ANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEAR 208 (318)
T ss_dssp CSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHH
Confidence 322111111 112222 2 4689988887655444444443
No 127
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=77.40 E-value=36 Score=29.69 Aligned_cols=149 Identities=15% Similarity=0.041 Sum_probs=83.6
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
++.|.||.. +........+.+.+. +++++..+..+. .+... .....-..+.+.. ..+..+++.|.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGAD-IITRA---MCAPNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCCG-GGGTT---TCCTTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCCh-hhccc---CCCCCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 378899865 344445555656553 567777664332 22221 0001111122332 2345566666664 34
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f-tS~sav~~~~~~l~~~ 250 (301)
++|.++..+.. .+.+.+.|++.|.++.....|... ..+....+..+ ..+|+|++ .+...+..+++.+.+.
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~ 229 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAA 229 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHT
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 68888765432 356788899999987655545322 12222223222 37898888 7888888888888765
Q ss_pred cCCCceEEEEC
Q 022176 251 EQWSNSVACIG 261 (301)
Q Consensus 251 ~~~~~~i~aIG 261 (301)
+ .+++++..|
T Consensus 230 g-~~vp~~~~~ 239 (375)
T 4evq_A 230 N-LGIPLWGPG 239 (375)
T ss_dssp T-CCCCEEEEG
T ss_pred C-CCceEEecC
Confidence 4 356777665
No 128
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=77.38 E-value=8.3 Score=32.20 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=56.3
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEE--eChHH-----HHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GSV 116 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iif--tS~~a-----v~~ 116 (301)
.+.+|++.-+.+ ...-....|+.+|++|+++..- +| .+.+.+...+ .+.|.|.+ ++... ++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~--vp---~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD--VL---NENVVEEAAK-HKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS--CC---HHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC--CC---HHHHHHHHHH-cCCCEEEEEchhcccCcHHHHHH
Confidence 356777765443 2246677899999999987642 12 1344444433 56788777 44333 445
Q ss_pred HHHHHHHcCC-CCceEEEEchhhHHHHHHH
Q 022176 117 FLEAWKEAGT-PNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 117 f~~~l~~~~~-~~~~i~avG~~Ta~~L~~~ 145 (301)
+.+.+++.+. +++++++-|....+.+.+.
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESSSCCHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCHHHHHH
Confidence 6667777665 4799999998665555444
No 129
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=77.30 E-value=36 Score=29.65 Aligned_cols=146 Identities=11% Similarity=-0.023 Sum_probs=82.0
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iif-tS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
++.+.||- .+........+.+.+. +++++..+... ..+... ...-..+.|.. ..+..+++.+.+.. ..
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~~-~~~~~~-----~~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 149 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPASTN-PLVTQG-----RKFVSRVCFIDPFQGAAMAVFAYKNL-GA 149 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCCC-GGGTTT-----CSSEEESSCCHHHHHHHHHHHHHHTS-CC
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCCC-ccccCC-----CCCEEEEeCCcHHHHHHHHHHHHHhc-CC
Confidence 45889884 4555566666666553 56777766533 222211 01111123322 23455666664432 34
Q ss_pred CEEEEEcC-Cc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHhhhc
Q 022176 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISD 249 (301)
Q Consensus 179 ~~vLi~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f-tS~sav~~~~~~l~~ 249 (301)
++|.++.+ +. ..+.+.+.|++.|.++.... |... ..+....+..+ .++|+|++ .+...+..++..+.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 226 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQ 226 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHH
Confidence 68887743 21 12457788999999876655 6542 22222223322 57899988 888888888888876
Q ss_pred ccCCCceEEEE
Q 022176 250 TEQWSNSVACI 260 (301)
Q Consensus 250 ~~~~~~~i~aI 260 (301)
.+. +.+++..
T Consensus 227 ~g~-~~~~~~~ 236 (366)
T 3td9_A 227 LGF-TGYILAG 236 (366)
T ss_dssp TTC-CSEEEEC
T ss_pred cCC-CceEEee
Confidence 543 4566543
No 130
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=77.28 E-value=18 Score=26.08 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=65.3
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHhhhccc
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 251 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS----~sav~~~~~~l~~~~ 251 (301)
++||++-.+.. +..+...|+..|++|.. .. ...+.++.+ ..+|.|+.-- ..+.+ +++.++...
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~---~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~-~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIE---AE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFT-VLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHH-HHHHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEE---eC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHH-HHHHHHhcc
Confidence 57888877654 56788889988876532 11 122333333 4688877731 12333 344443322
Q ss_pred -CCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 252 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 252 -~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
..+++++.++ +.....+.+.|... ++.+..+.+.|.+.+.+.++
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSLGARK-VMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC
T ss_pred cccCCCEEEEecCCchHHHHHHHhcChhh-hccCCCCHHHHHHHHHHHhc
Confidence 2356666654 44556666789765 66788899999999988764
No 131
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=77.22 E-value=20 Score=26.58 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCC-CeeEEEeeeeeeeCCCCcHHHH--HHc-CCCCEEEEEC---hHHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVL--KQA-LSIPVVAVAS---PSAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~--~~~-~~~d~I~ftS---~sav~~~~~~l~ 248 (301)
.+.+||++-.+.. +..|.+.|+..| +.|.... ...+.+. ... ..+|+|++-- ....-.+++.++
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 90 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTV--------GRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLS 90 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC--------CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC--------CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHH
Confidence 4578999988765 567888999888 6543211 1111111 112 5789888753 222233444444
Q ss_pred cccCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccCC
Q 022176 249 DTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 249 ~~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
... ..++++.++. .....+.+.|.. .++....+.+.|.+.|...++.+.+
T Consensus 91 ~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~-~~l~Kp~~~~~L~~~i~~~~~~~~~ 144 (146)
T 4dad_A 91 RLH-PGLTCLLVTTDASSQTLLDAMRAGVR-DVLRWPLEPRALDDALKRAAAQCAQ 144 (146)
T ss_dssp HHC-TTCEEEEEESCCCHHHHHHHHTTTEE-EEEESSCCHHHHHHHHHHHHHTCCC
T ss_pred HhC-CCCcEEEEeCCCCHHHHHHHHHhCCc-eeEcCCCCHHHHHHHHHHHHhhhcc
Confidence 322 2566666543 334445567765 4667778999999999998876654
No 132
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=77.18 E-value=3.6 Score=33.95 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCEEEEEcCCcC------------hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEC-------hH
Q 022176 178 KCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PS 238 (301)
Q Consensus 178 ~~~vLi~rg~~~------------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS-------~s 238 (301)
..+||++-|... .+.+.+.+++.|.+|..+.+|+. .+.....+.+...|.|+|.+ |.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~----~d~~~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSD----YDVKAEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSC----CCHHHHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCcc----ccHHHHHHHHHhCCEEEEECCccccCCCH
Confidence 357776654433 12456667777999999999862 23344455567899999988 57
Q ss_pred HHHHHHHh
Q 022176 239 AVRSWVNL 246 (301)
Q Consensus 239 av~~~~~~ 246 (301)
.++.|++.
T Consensus 88 ~LK~~iDr 95 (204)
T 2amj_A 88 TVKKYIDD 95 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88999985
No 133
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=76.87 E-value=18 Score=26.06 Aligned_cols=113 Identities=10% Similarity=0.036 Sum_probs=61.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~ 120 (301)
.+..+++||+.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLK-LLEH 72 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHH-HHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHH
Confidence 456788999987664 4467788899999876431 2333334444 335689887753 23444 4555
Q ss_pred HHHcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCC-cHHHHHHHhcc
Q 022176 121 WKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (301)
Q Consensus 121 l~~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~ 173 (301)
+.+.+ ++.+++++.. .......+.+.. |... +...+. +.+.|...+..
T Consensus 73 l~~~~-~~~~ii~~t~~~~~~~~~~~~~~---g~~~-~l~KP~~~~~~l~~~i~~ 122 (130)
T 3eod_A 73 IRNRG-DQTPVLVISATENMADIAKALRL---GVED-VLLKPVKDLNRLREMVFA 122 (130)
T ss_dssp HHHTT-CCCCEEEEECCCCHHHHHHHHHH---CCSE-EEESCC---CHHHHHHHH
T ss_pred HHhcC-CCCCEEEEEcCCCHHHHHHHHHc---CCCE-EEeCCCCcHHHHHHHHHH
Confidence 65543 3566655543 333332222111 6543 455555 56666665543
No 134
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=76.52 E-value=35 Score=32.26 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=30.2
Q ss_pred cCCCCCCCeEEEeCC-CCchHHHHHHHHhCCCcEEEec
Q 022176 44 ASASNSNPKVVVTRE-RGKNGKLIKALAKHRIDCLELP 80 (301)
Q Consensus 44 ~~~~l~g~~IlitR~-~~~~~~l~~~L~~~G~~v~~~P 80 (301)
.++||.|.+|...-. ..+...|.+.|.+.|++|...-
T Consensus 69 ~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~~ 106 (494)
T 3d64_A 69 AQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWAS 106 (494)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 569999999999544 4477899999999999997543
No 135
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=76.43 E-value=25 Score=31.45 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=89.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCC
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTP 127 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~ 127 (301)
.+++||++++-. +...+.|++ ++++...+- ..+.+++ +..+.++|.|+..+...+. .+++.+ +
T Consensus 29 ~~~~vl~~~~~~--~~~~~~L~~-~~~v~~~~~-----~~~~~~~---~~~~~~~d~li~~~~~~i~~~~l~~~-----p 92 (340)
T 4dgs_A 29 VKPDLLLVEPMM--PFVMDELQR-NYSVHRLYQ-----AADRPAL---EAALPSIRAVATGGGAGLSNEWMEKL-----P 92 (340)
T ss_dssp ----CEECSCCC--HHHHHTHHH-HSCCEETTC-----GGGHHHH---HHHGGGCCEEEEETTTCBCHHHHHHC-----S
T ss_pred CCCEEEEECCCC--HHHHHHHhc-CCcEEEeCC-----CCCHHHH---HHHhCCcEEEEEcCCCCCCHHHHhhC-----C
Confidence 356799999754 555667754 466553321 1122223 3344789999876643332 233322 3
Q ss_pred CceEEE-Echhh----HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc----------------------
Q 022176 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK---------------------- 173 (301)
Q Consensus 128 ~~~i~a-vG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~---------------------- 173 (301)
++|+++ .|.++ .+++++. |+.+.-.|. .+++..++. +.+
T Consensus 93 ~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~ 165 (340)
T 4dgs_A 93 SLGIIAINGVGTDKVDLARARRR------NIDVTTTPG-VLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPL 165 (340)
T ss_dssp SCCEEEEESSCCTTBCHHHHHHT------TCEEECCCS-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CC
T ss_pred CCEEEEECCCCccccCHHHHHhC------CEEEEECCC-CCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCc
Confidence 455543 23322 3567777 998866664 333332221 110
Q ss_pred -CCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc----HHHHHHcCCCCEEEEEChH
Q 022176 174 -NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 174 -~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~~~~~~d~I~ftS~s 238 (301)
....|+++.++.-..-...++..|+..|.+|. .|++.+..... ..+.+.+.+.|+|++.-|.
T Consensus 166 ~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~ 232 (340)
T 4dgs_A 166 GHSPKGKRIGVLGLGQIGRALASRAEAFGMSVR---YWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAA 232 (340)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE---EECSSCCTTSCCEECSSHHHHHHTCSEEEECC--
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHHCCCEEE---EEcCCcccccCceecCCHHHHHhcCCEEEEeCCC
Confidence 11257889999888888899999999998654 55544322110 1122224578999998774
No 136
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=76.40 E-value=16 Score=34.70 Aligned_cols=141 Identities=12% Similarity=0.008 Sum_probs=82.5
Q ss_pred chHHHHHHHHhCCCcEEEecee------------EeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022176 61 KNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTP 127 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~ 127 (301)
+..++...|++.|+++..+|-+ ...+. + ..+++ +.++.....-+..++.......+.+++. +.+
T Consensus 232 D~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g-g-~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP 308 (519)
T 1qgu_B 232 NFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG-G-TTQQE-MKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQP 308 (519)
T ss_dssp HHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC-C-BCHHH-HHHGGGEEEEEESSTTTCHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC-C-CCHHH-HHhhhcCCEEEEECHHHHHHHHHHHHHHcCCC
Confidence 3479999999999999988754 22222 1 12322 3456777777777776545566667653 444
Q ss_pred CceE-EEEc-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCC
Q 022176 128 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (301)
Q Consensus 128 ~~~i-~avG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G 201 (301)
-+.. +-+| ..|.+.|++..+ ..|.. +|+... -..+++.+... ...|+++++..+..-.-.|...|.+.|
T Consensus 309 ~i~~~~PiG~~~T~~~L~~la~--~~g~~---~~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElG 383 (519)
T 1qgu_B 309 ATEVAIPLGLAATDELLMTVSQ--LSGKP---IADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELG 383 (519)
T ss_dssp CCCCCCCBSHHHHHHHHHHHHH--HHCCC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred eEecCCCcchHHHHHHHHHHHH--HHCCC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCC
Confidence 3433 2377 667777777521 11432 121100 11233333221 126789998875444456788999999
Q ss_pred CeeEEEee
Q 022176 202 FEVVRLNT 209 (301)
Q Consensus 202 ~~v~~~~v 209 (301)
.+|..+.+
T Consensus 384 m~vv~v~~ 391 (519)
T 1qgu_B 384 CEPTVILS 391 (519)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 98866555
No 137
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=75.94 E-value=26 Score=27.31 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=49.1
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH---H--HHHHHhhhcccCCCceEEEEC----
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA---V--RSWVNLISDTEQWSNSVACIG---- 261 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa---v--~~~~~~l~~~~~~~~~i~aIG---- 261 (301)
+.+.+.|.+.|++|. +|+.. +.....+...+.++|.|+|-||.- + +.|++.+......+.+++++|
T Consensus 19 ~~ia~~l~~~g~~v~---~~~~~--~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 19 QAIGRGLVKTGVAVE---MVDLR--AVDPQELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHHTTCCEE---EEETT--TCCHHHHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHHHhCCCeEE---EEECC--CCCHHHHHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcCCC
Confidence 345666777787653 33321 122233333345688888888721 1 456655543222244444443
Q ss_pred -----HHHHHHHHHcCCCee----EecCCCCHHHH
Q 022176 262 -----ETTASAAKRLGLKNV----YYPTHPGLEGW 287 (301)
Q Consensus 262 -----~~Ta~al~~~G~~~~----~v~~~ps~e~l 287 (301)
....+.+++.|+..+ .+-..|+.+++
T Consensus 94 ~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 128 (161)
T 3hly_A 94 DDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIY 128 (161)
T ss_dssp SBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHH
Confidence 345667777898753 23456777654
No 138
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=75.90 E-value=48 Score=30.35 Aligned_cols=168 Identities=12% Similarity=0.029 Sum_probs=94.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTP 127 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~ 127 (301)
+++|+++.+-. +...+.|++.|+ ++...+- ..+.+++ ++.+.++|.|++.|..-+. .+++.+ +
T Consensus 4 ~~kil~~~~~~--~~~~~~l~~~~~~~v~~~~~-----~~~~~~l---~~~~~~~d~l~~~~~~~~~~~~l~~~-----~ 68 (404)
T 1sc6_A 4 KIKFLLVEGVH--QKALESLRAAGYTNIEFHKG-----ALDDEQL---KESIRDAHFIGLRSRTHLTEDVINAA-----E 68 (404)
T ss_dssp SCCEEECSCCC--HHHHHHHHHTTCCCEEECSS-----CCCHHHH---HHHTTSCSEEEECSSCCBCHHHHHHC-----S
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCCcEEEEcCC-----CCCHHHH---HHHhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 46899987643 445578888888 6765431 1122333 3456889999887754432 233222 3
Q ss_pred CceEEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc-------------C--------
Q 022176 128 NVRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK-------------N-------- 174 (301)
Q Consensus 128 ~~~i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~-------------~-------- 174 (301)
++++++ +|-.. -+++.+. |+.+.-.|. .++...++. +.+ |
T Consensus 69 ~Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~ 141 (404)
T 1sc6_A 69 KLVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 141 (404)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC
T ss_pred CCcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCcc
Confidence 455543 33322 4567777 998866664 333332221 100 1
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC--cHHHHHHcCCCCEEEEEChHH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~I~ftS~sa 239 (301)
...|+++.++.-..-...+++.|+..|.+|..+..+........ ...+.+.+.+.|+|++.-|.+
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 13678899998888888999999999987654433221111100 001112234678888877654
No 139
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=75.87 E-value=20 Score=26.06 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--C-CCCEEEEECh---HHHHHHHHhhhcc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~-~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
..+||++-.+.. +..+.+.|++.|++|... .. ..+....+ . .+|+|++--. ...-.+++.+++.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~-~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 77 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DG-AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRAS 77 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SS-HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTS
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CC-HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhc
Confidence 468999888765 567888999988765321 11 11222211 3 3787776421 1222344444443
Q ss_pred cCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 251 EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 251 ~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
...+.+++.++. .....+.+.|... ++....+.+.|.+.|.+....+
T Consensus 78 ~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 78 ERAALSIIVVSGDTDVEEAVDVMHLGVVD-FLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TTTTCEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC--
T ss_pred CCCCCCEEEEeCCCChHHHHHHHhCCcce-EEeCCCCHHHHHHHHHHHhcCc
Confidence 223566666543 3445566778765 6677789999999999887544
No 140
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=75.82 E-value=51 Score=30.66 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=107.7
Q ss_pred CCeEEEe-CC---CCchHHHHHHHHhCCCcEEEeceeE-----------e--eeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-----------H--AQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 50 g~~Ilit-R~---~~~~~~l~~~L~~~G~~v~~~P~~~-----------~--~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
..+|-|. -. ..+..++...|++.|+++..+|-+. . .+..+ ..+++ +.++...+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAE-LATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHH-HGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHH-HHhhhhCcEEEEecHH
Confidence 4455554 32 2356799999999999999886431 1 11111 12332 4466666666677887
Q ss_pred HHHHHHHHHHHcCCCCceEEEEc-----hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEE
Q 022176 113 AGSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLY 183 (301)
Q Consensus 113 av~~f~~~l~~~~~~~~~i~avG-----~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi 183 (301)
. ....+.+++. -+++++.++ ..|.+.|++..+ ..|..+ |+... -..+++.+.+. ...|+|+++
T Consensus 247 ~-~~~A~~Le~~--~GiP~~~~~~p~G~~~T~~~l~~la~--~~g~~~---~~~i~~er~r~~~~~~d~~~~l~Gkrv~i 318 (458)
T 3pdi_B 247 L-AGAADALAER--TGVPDRRFGMLYGLDAVDAWLMALAE--ISGNPV---PDRYKRQRAQLQDAMLDTHFMLSSARTAI 318 (458)
T ss_dssp G-HHHHHHHHHH--SCCCEEEECCSCHHHHHHHHHHHHHH--HHSSCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHH--HCCCEEecCCCcCHHHHHHHHHHHHH--HHCCch---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 6 4456666553 145555443 456666666411 114421 21111 11133333221 126789999
Q ss_pred EcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH
Q 022176 184 PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (301)
Q Consensus 184 ~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~ 263 (301)
..+..-.-.+.+.|.+.|.++..+.++...+ .. ++ . ..+-++..-...++.+++.. ...++.-|..
T Consensus 319 ~~~~~~~~~l~~~L~elGm~vv~~~~~~~~~-~~--~~----~-~~~~v~~~D~~~le~~i~~~------~pDllig~~~ 384 (458)
T 3pdi_B 319 AADPDLLLGFDALLRSMGAHTVAAVVPARAA-AL--VD----S-PLPSVRVGDLEDLEHAARAG------QAQLVIGNSH 384 (458)
T ss_dssp ECCHHHHHHHHHHHHTTTCEEEEEEESSCCS-CC--TT----T-TSSCEEESHHHHHHHHHHHH------TCSEEEECTT
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEEECCCCh-hh--hh----C-ccCcEEeCCHHHHHHHHHhc------CCCEEEEChh
Confidence 7776555568899999999998887766321 11 11 1 12334444333333333222 2334444555
Q ss_pred HHHHHHHcCCCe
Q 022176 264 TASAAKRLGLKN 275 (301)
Q Consensus 264 Ta~al~~~G~~~ 275 (301)
-...+++.|+.-
T Consensus 385 ~~~~a~k~gip~ 396 (458)
T 3pdi_B 385 ALASARRLGVPL 396 (458)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHHHcCCCE
Confidence 556667778754
No 141
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=75.63 E-value=4.4 Score=36.60 Aligned_cols=170 Identities=11% Similarity=-0.002 Sum_probs=89.9
Q ss_pred CCeEEEeCCCCchHHHHH-HHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HH-HHHHHHHcCC
Q 022176 50 NPKVVVTRERGKNGKLIK-ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SV-FLEAWKEAGT 126 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~-~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~-f~~~l~~~~~ 126 (301)
+|+|+++...+....+.+ .+++.|+++...+-. .++ +.++.+.++|.|+..+..-+ +. +++.+...
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~-----~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~-- 69 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA----LTS-----ATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEY-- 69 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC----CST-----TGGGGGTTCSEEEECCSSCBCCHHHHHHHHHT--
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCC----CCH-----HHHHHhcCCcEEEEcCCCCcCHHHHHHhcccc--
Confidence 478999876665555544 456779888766531 111 12345689999987653332 12 55555432
Q ss_pred CCceEEE-Echhh----HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----h-------------c-c----C----
Q 022176 127 PNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L-------------P-K----N---- 174 (301)
Q Consensus 127 ~~~~i~a-vG~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----l-------------~-~----~---- 174 (301)
++|+++ .|.++ .+++++. |+.+.-.|. ++++.+++. | . + +
T Consensus 70 -~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~ 141 (343)
T 2yq5_A 70 -GVKCIGLRIVGFNTINFDWTKKY------NLLVTNVPV-YSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNL 141 (343)
T ss_dssp -TCCEEEESSSCCTTBCSSTTCC--------CEEECCSC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGG
T ss_pred -CceEEEECceeecccchhHHHhC------CEEEEECCC-CCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCC
Confidence 233322 22221 1233444 666654543 232222211 0 0 0 1
Q ss_pred ---CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc--HHHHHHcCCCCEEEEEChH
Q 022176 175 ---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 175 ---~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~~~~d~I~ftS~s 238 (301)
...|++|.++.-......+++.|+..|.+|..+..|.....+... ..+.+.+.+.|+|++.-|.
T Consensus 142 ~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Pl 210 (343)
T 2yq5_A 142 ISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPL 210 (343)
T ss_dssp CBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCC
Confidence 125788999988888889999999999876555444321111000 0111223467888888774
No 142
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=75.51 E-value=46 Score=29.96 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhcccC-CCceEEEEC--
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDTEQ-WSNSVACIG-- 261 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~~~~-~~~~i~aIG-- 261 (301)
.+.+.|.+.|+++..+.+.+. ....+.+.+.++|.|+|.|| ..++.|++.+..... .+.+++.+|
T Consensus 276 ~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 276 ALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEec
Confidence 466677778876655544321 12233444668999999986 578999988754222 233333322
Q ss_pred -------HHHHHHHHH-cCCCee-----EecCCCCHHH
Q 022176 262 -------ETTASAAKR-LGLKNV-----YYPTHPGLEG 286 (301)
Q Consensus 262 -------~~Ta~al~~-~G~~~~-----~v~~~ps~e~ 286 (301)
....+.++. .|+..+ .+...|+.+.
T Consensus 351 g~~~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~ 388 (414)
T 2q9u_A 351 GWSNRAVPDIVAELRDGCKADVYDEKGITFKFNYTEEL 388 (414)
T ss_dssp SSSCCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHH
T ss_pred CCCchhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHH
Confidence 345556677 787642 2234566554
No 143
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=74.49 E-value=22 Score=25.84 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~l~~ 123 (301)
.+++||+.-... ....+...|++.|+++... .+..+....+.....+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 467899887654 4467888899999876532 12223333443444588887642 34554 5566665
Q ss_pred cCCCCceEEEEchh-hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 124 AGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 124 ~~~~~~~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
....+++++++... ..+...+.++ .|.. ++...+.+.+.|...+.+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~---~g~~-~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMH---LGVV-DFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHH---TTCS-EEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHh---CCcc-eEEeCCCCHHHHHHHHHHH
Confidence 43456777776543 3333333221 1654 3566778889988887654
No 144
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=74.45 E-value=41 Score=28.92 Aligned_cols=197 Identities=10% Similarity=0.023 Sum_probs=94.8
Q ss_pred CCeEEEeCCCCc------hHHHHHHHHhCCCc----EEEeceeEeeeC-CCchHHHHHHhc--CCCccEEEEeChHHHHH
Q 022176 50 NPKVVVTRERGK------NGKLIKALAKHRID----CLELPLIQHAQG-PDTDRLSSVLNA--DTIFDWIIITSPEAGSV 116 (301)
Q Consensus 50 g~~IlitR~~~~------~~~l~~~L~~~G~~----v~~~P~~~~~~~-~d~~~l~~~l~~--l~~~d~IiftS~~av~~ 116 (301)
-.+|-|+.--+. .+-+.+.|++.|+. +.. ...-. .|...+.+..++ -.++|.||-.+..++..
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~----~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a 83 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF----DYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQA 83 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE----EEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE----EEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHH
Confidence 356777754321 13467788888863 432 22222 344444433333 36799888777777665
Q ss_pred HHHHHHHcCCCCceEEEEchh---hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcC----
Q 022176 117 FLEAWKEAGTPNVRIGVVGAG---TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---- 189 (301)
Q Consensus 117 f~~~l~~~~~~~~~i~avG~~---Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~---- 189 (301)
..+. ..+++++..|-. .+...... ...|-++.-+.+....+.-++.+.+.....++|.++-....
T Consensus 84 ~~~~-----~~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 84 LVSA-----TKTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHH-----CSSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHhh-----cCCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 5432 135666554421 11111111 01122221111222234444555444334568766644322
Q ss_pred --hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH-cCCCCEEEEEChHHHHHHHHhhhccc-CCCceEEEECH
Q 022176 190 --SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGE 262 (301)
Q Consensus 190 --~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~I~ftS~sav~~~~~~l~~~~-~~~~~i~aIG~ 262 (301)
.+.+.+.+.+.|+++.+..+... ......... ..+.|+++...-..+....+.+.... ..++++++...
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATALKS----ADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSG----GGHHHHHHHHHTTCSEEEECSCHHHHHTHHHHHHHHHHTTCCEEESSH
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCh----HHHHHHHHhccCCeeEEEEeCCcchhhHHHHHHHHHhhcCCceeeccc
Confidence 33566777888987755444322 111222222 36889888776555444333322211 12566666544
No 145
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=74.29 E-value=26 Score=26.53 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=43.4
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcC-CCCEEEEECh----------HHHHHHHHhhhcccCCCceEEE
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASP----------SAVRSWVNLISDTEQWSNSVAC 259 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~-~~d~I~ftS~----------sav~~~~~~l~~~~~~~~~i~a 259 (301)
+.+.+.|.+.|++|..+.+.+... . .+. .+|.|+|-+| ..++.|++.+......+.++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~-----~----~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~v 90 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASA-----E----NLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAA 90 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCC-----T----TTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCH-----h----HhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEE
Confidence 346666777787665544432211 1 134 7887777664 3677888776543223444443
Q ss_pred E--C-----------HHHHHHHHHcCCCe
Q 022176 260 I--G-----------ETTASAAKRLGLKN 275 (301)
Q Consensus 260 I--G-----------~~Ta~al~~~G~~~ 275 (301)
+ | ....+.|++.|+++
T Consensus 91 fg~G~~~y~~~~~a~~~l~~~l~~~G~~~ 119 (148)
T 3f6r_A 91 FASGDQEYEHFCGAVPAIEERAKELGATI 119 (148)
T ss_dssp EEEECTTSSSTTTHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3 3 34556677788865
No 146
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=74.20 E-value=29 Score=27.05 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=52.8
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH-----HHHHHHhhhcccCCCceEEEEC----
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-----VRSWVNLISDTEQWSNSVACIG---- 261 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-----v~~~~~~l~~~~~~~~~i~aIG---- 261 (301)
+.+.+.|.+.|++|..+.+.+ . .....+...+.++|.|+|-||.- ...|++.+......+.+++++|
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~---~-~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGA---A-VDLQELRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSS---C-CCHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECCSSS
T ss_pred HHHHHHHHHCCCeEEEEECcC---c-CCHHHHHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEcCCC
Confidence 356777888887654433321 1 02334444456899999999731 1455555543222345555544
Q ss_pred -----HHHHHHHHHcCCCee----EecCCCCHHHH
Q 022176 262 -----ETTASAAKRLGLKNV----YYPTHPGLEGW 287 (301)
Q Consensus 262 -----~~Ta~al~~~G~~~~----~v~~~ps~e~l 287 (301)
....+.+++.|+..+ .+-..|+.+++
T Consensus 99 ~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 133 (159)
T 3fni_A 99 DDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTY 133 (159)
T ss_dssp CBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHH
Confidence 355667788898752 23456777654
No 147
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=74.15 E-value=26 Score=32.98 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=29.5
Q ss_pred cCCCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEe
Q 022176 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~ 79 (301)
.++||+|.||..+-.- .+...|.+.|.+.|++|.+.
T Consensus 40 ~~~pl~g~ri~~~lh~~~~ta~l~~tL~~~Ga~v~~~ 76 (479)
T 1v8b_A 40 KDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWC 76 (479)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHCCCEEEEe
Confidence 5699999999986654 37788999999999999643
No 148
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=74.13 E-value=8.6 Score=35.47 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=56.3
Q ss_pred CeEEEeCCCC------chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHHH
Q 022176 51 PKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVF 117 (301)
Q Consensus 51 ~~IlitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-------av~~f 117 (301)
.+|+|....- -++.+++.|++.|.++..+-+...... + +...+..+.++|.|+|-||. .+..|
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~-~---~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~ 341 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERP-A---ISEILKDIPDSEALIFGVSTYEAEIHPLMRFT 341 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCC-C---HHHHHHHSTTCSEEEEEECCTTSSSCHHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCC-C---HHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHH
Confidence 4566654331 246777888899998886655554432 2 33445567899999998885 56677
Q ss_pred HHHHHHcCCCCceEEEEch
Q 022176 118 LEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 118 ~~~l~~~~~~~~~i~avG~ 136 (301)
+..+......+.++++.|.
T Consensus 342 l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 342 LLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHhcccCCCEEEEEEC
Confidence 7777766667788888884
No 149
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=73.85 E-value=1.1 Score=36.94 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=35.9
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
+..+.+.+++.|.++..+-+++..+..+ ..+....+++...|.|||.||.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~-~dv~~~~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGK-IDVAAEQKLIETHDSLVWQFPI 68 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCC-CCHHHHHHHHHTSSSEEEEEEC
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCc-hhHHHHHHHHHhCCEEEEEcCh
Confidence 5567777888899999988887655321 2344445567889999999974
No 150
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=73.45 E-value=51 Score=29.50 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=93.1
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCC
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGT 126 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~ 126 (301)
..+++||++.+-. +...+.|++. +++...+. ....+.+++ ++.+.++|.|+..+..-+. .+++.+ .
T Consensus 26 ~~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~l---~~~~~~~d~li~~~~~~i~~~~l~~~----~ 92 (345)
T 4g2n_A 26 HPIQKAFLCRRFT--PAIEAELRQR-FDLEVNLE---DTVLTPSGI---ASRAHGAEVLFVTATEAITAEVIRKL----Q 92 (345)
T ss_dssp -CCCEEEESSCCC--HHHHHHHHHH-SEEEECTT---CCCCCHHHH---HHHTTTCSEEEECTTSCBCHHHHHHT----T
T ss_pred CCCCEEEEeCCCC--HHHHHHHHcc-CCEEEecC---CCCCCHHHH---HHHhcCCeEEEEeCCCCCCHHHHHhh----c
Confidence 3467899998764 4456677765 45543221 111122333 3456889999876533222 233322 1
Q ss_pred CCceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----h--c-------------c--------
Q 022176 127 PNVRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--P-------------K-------- 173 (301)
Q Consensus 127 ~~~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----l--~-------------~-------- 173 (301)
+++|+++ +|-. -.+++++. |+.+.-.|. .+++.+++. | . .
T Consensus 93 ~~Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~ 165 (345)
T 4g2n_A 93 PGLKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQ 165 (345)
T ss_dssp TTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTT
T ss_pred CCceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccc
Confidence 3566554 2322 24667777 998876664 333333322 0 0 0
Q ss_pred ---CCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC-----C--cHHHHHHcCCCCEEEEEChH
Q 022176 174 ---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----V--DQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 174 ---~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----~--~~~~~~~~~~~d~I~ftS~s 238 (301)
....|++|.++.-......+++.|+..|.+|.. |++.+... . ...+.+.+.+.|+|++.-|.
T Consensus 166 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~---~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Pl 237 (345)
T 4g2n_A 166 LLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY---HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPG 237 (345)
T ss_dssp TCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE---ECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCC
T ss_pred ccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE---ECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCC
Confidence 112578899999888888999999999987654 44432110 0 00111223567888887764
No 151
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=73.01 E-value=48 Score=29.04 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=123.8
Q ss_pred CCCCCCeEEEe-CC-CCchHHHHHHHHhCCCcEE-Ee-cee---EeeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHH
Q 022176 46 ASNSNPKVVVT-RE-RGKNGKLIKALAKHRIDCL-EL-PLI---QHAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVF 117 (301)
Q Consensus 46 ~~l~g~~Ilit-R~-~~~~~~l~~~L~~~G~~v~-~~-P~~---~~~~~~d~~~l~~~l~~l~~~d~I-iftS~~av~~f 117 (301)
.-+..++|+|. -. ........+.|.+.|++++ .+ |-. ++...+-+..+.+..+. ...|.+ ||+.+..+...
T Consensus 9 ~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~-~~vD~avI~vP~~~~~~~ 87 (305)
T 2fp4_A 9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQ-TGATASVIYVPPPFAAAA 87 (305)
T ss_dssp GCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHH-HCCCEEEECCCHHHHHHH
T ss_pred HHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhc-CCCCEEEEecCHHHHHHH
Confidence 34556666666 33 2335677788889998843 11 221 11111112234444421 145655 55666666666
Q ss_pred HHHHHHcCCCCceEEEEchhhHH--HHHHHhhcccC-CCceeecCCCC---c-HHHHHHHhccCCCCCCEEEEEcCCc-C
Q 022176 118 LEAWKEAGTPNVRIGVVGAGTAS--IFEEVIQSSKC-SLDVAFSPSKA---T-GKILASELPKNGKKKCTVLYPASAK-A 189 (301)
Q Consensus 118 ~~~l~~~~~~~~~i~avG~~Ta~--~L~~~~~~~~~-G~~~~~~p~~~---~-~e~L~~~l~~~~~~~~~vLi~rg~~-~ 189 (301)
.+.+.+.+.+.+-+++-|-...+ .+.+.. ... |+.. +.|... + ...+.-.++....+.++|-++.-.+ -
T Consensus 88 ~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a--~~~~gi~l-iGPnc~Gii~p~~~~~~~~~~~~~~~G~va~vSqSG~l 164 (305)
T 2fp4_A 88 INEAIDAEVPLVVCITEGIPQQDMVRVKHRL--LRQGKTRL-IGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTL 164 (305)
T ss_dssp HHHHHHTTCSEEEECCCCCCHHHHHHHHHHH--TTCSSCEE-ECSSSCEEEETTTEEEESSCGGGCCEEEEEEEESCSHH
T ss_pred HHHHHHCCCCEEEEECCCCChHHHHHHHHHH--HhcCCcEE-EeCCCCeEecccccceeeccccCCCCCCEEEEecchHH
Confidence 66666665433334444433222 344432 233 5553 334320 0 0111111222112345676554443 3
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh------HHHHHHHHhhhcccCCCceE--
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP------SAVRSWVNLISDTEQWSNSV-- 257 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~I~ftS~------sav~~~~~~l~~~~~~~~~i-- 257 (301)
...+.+.+.++|.-+..+.-.-..+. .....++++.+ .+-++|++..- ...+.|++...+. ..++++
T Consensus 165 ~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~-~~~KPVv~ 243 (305)
T 2fp4_A 165 TYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSG-PKSKPVVS 243 (305)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCS-TTCCCEEE
T ss_pred HHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHh-cCCCCEEE
Confidence 55678888999988877777666542 23333444433 45667777755 3478888865431 112333
Q ss_pred EEECHHH-----------------------HHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 258 ACIGETT-----------------------ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 258 ~aIG~~T-----------------------a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+..|.+. ..++++.|+.++ .+.++|.+.+...++..
T Consensus 244 ~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v-----~~~~el~~~~~~~~~~~ 302 (305)
T 2fp4_A 244 FIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVS-----MSPAQLGTTIYKEFEKR 302 (305)
T ss_dssp EEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEEC-----SSTTCHHHHHHHHHHHT
T ss_pred EEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEe-----CCHHHHHHHHHHHHHhc
Confidence 3345433 346778887542 25666777777666543
No 152
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=72.53 E-value=2.5 Score=34.79 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=43.6
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeCCC-CcHHHHHHcCCCCEEEEEC-------hHHHHHHHHhhh
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~~~~~d~I~ftS-------~sav~~~~~~l~ 248 (301)
+..+.+.+++.|.+|..+.+|+..+... +.....+.+...|.|+|.| |..++.|++.+-
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 4557788888899999999998764322 2233445567899999988 478999999863
No 153
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=72.52 E-value=3.8 Score=31.52 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-CccEEEEeChH----------HHHHHHHHHHHcCCCCceE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRI 131 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~d~IiftS~~----------av~~f~~~l~~~~~~~~~i 131 (301)
+.+++.|++.|+++..+++-+..+ .++. .+|.|||-||. .++.|++.+....+.+.++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~-----------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~ 88 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASA-----------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKV 88 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCC-----------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCH-----------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEE
Confidence 345555667787766544333211 1355 89999888753 4556666554434566777
Q ss_pred EEEch
Q 022176 132 GVVGA 136 (301)
Q Consensus 132 ~avG~ 136 (301)
+++|-
T Consensus 89 ~vfg~ 93 (148)
T 3f6r_A 89 AAFAS 93 (148)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
No 154
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=72.45 E-value=1.6 Score=35.79 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred CeEEEeCCC----CchHHHHH----H-HHhCCCcEEEeceeEeee------CCCchHHHHHHhcCCCccEEEEeChH---
Q 022176 51 PKVVVTRER----GKNGKLIK----A-LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSPE--- 112 (301)
Q Consensus 51 ~~IlitR~~----~~~~~l~~----~-L~~~G~~v~~~P~~~~~~------~~d~~~l~~~l~~l~~~d~IiftS~~--- 112 (301)
++|++.-.. +....+++ . +++.|.++..+.+.+... ....+.+......+..+|.|||.||.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~ 82 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKA 82 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCC
Confidence 456654322 33445544 4 555688777666543311 00112344444456789999999974
Q ss_pred ----HHHHHHHHHHHcCCCCceEEEEc
Q 022176 113 ----AGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 113 ----av~~f~~~l~~~~~~~~~i~avG 135 (301)
.++.|++.+....+.+.++++++
T Consensus 83 ~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 83 SYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp BCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred CCCHHHHHHHHhccccccCCCEEEEEE
Confidence 45666654432234456666554
No 155
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=71.64 E-value=9.3 Score=32.98 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=43.1
Q ss_pred CEEEEEcCC---cChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEC-------hHHHHHHHHhhh
Q 022176 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (301)
Q Consensus 179 ~~vLi~rg~---~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS-------~sav~~~~~~l~ 248 (301)
+++|++.|. .+...|.+.|++.|++|+.+...+. ....+ .+.+||+||+.. +...+.+.+..+
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~---~~~~~----~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG---LDVGE----LLAKQDLVILSDYPAERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC---BCSSH----HHHTCSEEEEESCCGGGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc---ccChh----HHhcCCEEEEcCCccccCCHHHHHHHHHHHH
Confidence 589999764 4667899999999999877665321 11112 256899999863 455666666665
Q ss_pred c
Q 022176 249 D 249 (301)
Q Consensus 249 ~ 249 (301)
.
T Consensus 78 ~ 78 (259)
T 3rht_A 78 A 78 (259)
T ss_dssp T
T ss_pred h
Confidence 3
No 156
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=71.56 E-value=5.2 Score=39.50 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCEEEEEcC--CcC----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChH-H--------
Q 022176 177 KKCTVLYPAS--AKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS-A-------- 239 (301)
Q Consensus 177 ~~~~vLi~rg--~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~s-a-------- 239 (301)
.+++|+++-+ ++. ...+.+.|++.|+.|..+-.-.-...+ ..+.. ...+|+|++.... .
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD----~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~ 603 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVD----ETYSASDAVQFDAVVVADGAEGLFGADSFT 603 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCC----EESTTCCGGGCSEEEECTTCGGGCCTTTTT
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccc----cchhcCCccccCeEEecCCCcccccccccc
Confidence 6789999888 432 346889999999999877763211111 11111 2479999998773 2
Q ss_pred --------HH------HHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe----eEecCCCCHHHHHHHHHHHHHccCC
Q 022176 240 --------VR------SWVNLISDTEQWSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 240 --------v~------~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~----~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
.+ ...+.+.+...+...|.+||.... .|.+.|+.. +++...+ .++.++.+.+.+..|+.
T Consensus 604 ~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~~d~GVvts~~~-~~~f~~~fi~~la~hR~ 680 (688)
T 2iuf_A 604 VEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISSERQGVYTGKNA-GDAFAKDIKSGLSTFKF 680 (688)
T ss_dssp CCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCTTSTTEEEESSS-SHHHHHHHHHHHHHCSC
T ss_pred cccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCCCCCCEEEcCCc-cHHHHHHHHHHHHhCCC
Confidence 11 112222221123577888876543 788888842 4555555 56788888888888764
No 157
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=71.30 E-value=56 Score=32.08 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=78.6
Q ss_pred CcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHH---------HHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCC
Q 022176 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEE---------GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIP 230 (301)
Q Consensus 162 ~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~---------~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d 230 (301)
.+.+++-..+.+. ..+|++-+.....-++.. .|+..|++|..+-+- + .++++.+.. .++|
T Consensus 589 ls~eEi~~~i~e~---kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvd--V----PpEeIVeAA~EedAD 659 (763)
T 3kp1_A 589 LSEDEIREDIEKT---PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTS--V----PVEKLVDAAIELKAD 659 (763)
T ss_dssp CCHHHHHHHHHHS---CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSS--B----CHHHHHHHHHHTTCS
T ss_pred CCHHHHHhhhhcc---CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCC--C----CHHHHHHHHHHcCCC
Confidence 4556665556553 368888665544333333 589999877555442 2 233444432 5899
Q ss_pred EEEEECh--------HHHHHHHHhhhcccCC-CceEEEECH-HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 231 VVAVASP--------SAVRSWVNLISDTEQW-SNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 231 ~I~ftS~--------sav~~~~~~l~~~~~~-~~~i~aIG~-~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+|.+++- ..++.+.+.+++.+.. ++++++=|. .+.+.+++.|... +..+......+++.|.+.++..
T Consensus 660 VVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa-~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 660 AILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDA-GFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp EEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcE-EECCcchHHHHHHHHHHHHHHh
Confidence 9999853 3345666666665543 367887775 4555567789866 4466667778888777766543
No 158
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=71.01 E-value=33 Score=29.74 Aligned_cols=146 Identities=10% Similarity=-0.001 Sum_probs=81.6
Q ss_pred CCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCC-CceeecCCC-CcHHHHHHHhccCCC
Q 022176 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 100 l~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G-~~~~~~p~~-~~~e~L~~~l~~~~~ 176 (301)
-.+.|.||.. +........+.+.+. +++++..+... ..+... + .-..+.|.. ..+..+++.|.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAAH-PDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCC-GGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCCC-cccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 3678888864 444445555555553 56777765432 222222 2 111123332 3355566776665
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-HHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-av~~~~~~l~ 248 (301)
..++|.++..+.. .+.+.+.|++.|.++.....|... ..+....+..+ ..+|+|++.+.. .+..+++.+.
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALR 215 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 3468888754332 345778899999987655555432 12222223322 468888887765 7777877777
Q ss_pred cccCCCceEEEE
Q 022176 249 DTEQWSNSVACI 260 (301)
Q Consensus 249 ~~~~~~~~i~aI 260 (301)
+.+. +.+++..
T Consensus 216 ~~g~-~~p~~~~ 226 (358)
T 3hut_A 216 ARGS-ALPVYGS 226 (358)
T ss_dssp HTTC-CCCEEEC
T ss_pred HcCC-CCcEEec
Confidence 6543 5666654
No 159
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=70.94 E-value=31 Score=25.93 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=64.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~l~~ 123 (301)
.+++|||.-... ....+...|++.|+++..+ .+.++..+.+ .-..+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFL-SLTRPDLIISDVLMPEMDGYA-LCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHH-TTCCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 467899887654 4567888898889765422 2333344445 335799988753 34555 5566665
Q ss_pred cC-CCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 124 AG-TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 124 ~~-~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.. ..+++++++.. .......+.+.. |.. +++..+.+.+.|...+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 123 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLEC---GAD-DFITKPCKDVVLASHVKR 123 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHH---CCS-EEEESSCCHHHHHHHHHH
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHC---CCC-EEEeCCCCHHHHHHHHHH
Confidence 43 35677766543 333333332211 654 356677788888776643
No 160
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=70.87 E-value=7.2 Score=33.47 Aligned_cols=142 Identities=8% Similarity=0.069 Sum_probs=82.8
Q ss_pred EEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 133 VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 133 avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
++|=+|..++.+++ + . ..+. ...++.+.+. . ..+++|.++..-. .+.+.|++. . ++.+++.
T Consensus 83 algiAaiNAv~~~~-----~-~--~~~~--~~~d~~~~~~-~-~~~~kV~vIG~~p---~l~~~l~~~-~---~v~V~d~ 143 (249)
T 3npg_A 83 TLGVAAINAVSQYY-----I-D--LREA--KWIDVTELIQ-Q-DEIKRIAIIGNMP---PVVRTLKEK-Y---EVYVFER 143 (249)
T ss_dssp HHHHHHHHHHHHHH-----C-C--CTTC--BCCCHHHHHH-T-SCCSEEEEESCCH---HHHHHHTTT-S---EEEEECC
T ss_pred HHHHHHHHHhhhhc-----c-c--cCCc--cccCHHHHHh-h-cCCCEEEEECCCH---HHHHHHhcc-C---CEEEEEC
Confidence 56667777776652 2 1 1121 1223445554 2 2457999887654 467778776 4 5677777
Q ss_pred eeCCC---C-cHHHH-HHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHHHH---HHHcCCCeeEecCCCCH
Q 022176 213 EPVHH---V-DQTVL-KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASA---AKRLGLKNVYYPTHPGL 284 (301)
Q Consensus 213 ~~~~~---~-~~~~~-~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~a---l~~~G~~~~~v~~~ps~ 284 (301)
.+... . +.... +.+...|++++|.+.-+..=++.+-+.......++.+||+|.-. +..+|+..+-=..-.+.
T Consensus 144 ~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~ 223 (249)
T 3npg_A 144 NMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNI 223 (249)
T ss_dssp SGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCH
T ss_pred CCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCccEEEEEEecCH
Confidence 66421 1 11111 23578999999999987765554433221234568899998733 33467765322222478
Q ss_pred HHHHHHHHH
Q 022176 285 EGWVDSILE 293 (301)
Q Consensus 285 e~ll~ai~~ 293 (301)
+.+++.|++
T Consensus 224 ~~~l~~i~~ 232 (249)
T 3npg_A 224 EKALVKLKL 232 (249)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888888865
No 161
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=70.70 E-value=12 Score=31.88 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=47.7
Q ss_pred CCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeeeCCCC------cHHHHHHcCCCCEEEEECh------
Q 022176 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------ 237 (301)
Q Consensus 178 ~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------~~~~~~~~~~~d~I~ftS~------ 237 (301)
..+||++.|... .+.+.+.+++.|++|..+.+++.-..... ...+.+.+...|.|||.||
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~si 113 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAM 113 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSC
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCc
Confidence 358887776642 13456667778998888877663211111 1234444678999999994
Q ss_pred -HHHHHHHHhhhc
Q 022176 238 -SAVRSWVNLISD 249 (301)
Q Consensus 238 -sav~~~~~~l~~ 249 (301)
..+++|++.+..
T Consensus 114 pa~LKn~iD~l~~ 126 (247)
T 2q62_A 114 TGIMKAQIDWIPL 126 (247)
T ss_dssp CHHHHHHHHTSCS
T ss_pred cHHHHHHHHHhhh
Confidence 789999999864
No 162
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=70.67 E-value=39 Score=30.04 Aligned_cols=105 Identities=11% Similarity=0.036 Sum_probs=55.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEE
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVA 258 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~ 258 (301)
..|++..|....+.+.+.+++.+.++... -|. ++ +.+.+...|.++--|. .-.+.+.+.. .++.+
T Consensus 212 ~~vi~~~G~~~~~~~~~~~~~~~~~~~v~-~f~----~d----m~~~l~~aDlvI~raG--~~Tv~E~~a~----G~P~I 276 (365)
T 3s2u_A 212 PAIRHQAGRQHAEITAERYRTVAVEADVA-PFI----SD----MAAAYAWADLVICRAG--ALTVSELTAA----GLPAF 276 (365)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCCCEEE-SCC----SC----HHHHHHHCSEEEECCC--HHHHHHHHHH----TCCEE
T ss_pred eEEEEecCccccccccceecccccccccc-cch----hh----hhhhhccceEEEecCC--cchHHHHHHh----CCCeE
Confidence 34555555555555555555555443211 111 11 1112234677765443 3334444332 34444
Q ss_pred EE-------CHHH--HHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 259 CI-------GETT--ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 259 aI-------G~~T--a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.| +..+ |+.+.+.|.-..+..+..+.+.|.++|.+.+.++
T Consensus 277 lip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~ 325 (365)
T 3s2u_A 277 LVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHP 325 (365)
T ss_dssp ECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCT
T ss_pred EeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCH
Confidence 33 3333 5678888876544334568899999999988764
No 163
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=70.55 E-value=31 Score=34.24 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-----av~~f~ 118 (301)
...+|++..... +..-.+..|+..|++|+..+..... +++.+... -.+.|.|.+.|.. .+..++
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~-----eeiv~aA~-e~~adiVglSsl~~~~~~~~~~vi 668 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTP-----EETARQAV-EADVHVVGVSSLAGGHLTLVPALR 668 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCH-----HHHHHHHH-HTTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCH-----HHHHHHHH-HcCCCEEEEeeecHhHHHHHHHHH
Confidence 456777765543 2235566899999999987664321 23333332 2578888887733 345566
Q ss_pred HHHHHcCCCCceEEEEc-hhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHHh
Q 022176 119 EAWKEAGTPNVRIGVVG-AGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG-~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l 171 (301)
+.+++.+..++++++=| .-+ .+.+++. |+...+.|. .+...++..+
T Consensus 669 ~~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~g-t~~~e~a~~l 717 (727)
T 1req_A 669 KELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTPG-TVIPESAISL 717 (727)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECTT-CCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcCC-ccHHHHHHHH
Confidence 77778787777777766 223 4677888 998766554 3444444444
No 164
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=70.49 E-value=8.2 Score=33.74 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=48.1
Q ss_pred CCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeeeCCC----C---cHHHHHHcCCCCEEEEECh-----
Q 022176 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----V---DQTVLKQALSIPVVAVASP----- 237 (301)
Q Consensus 178 ~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~---~~~~~~~~~~~d~I~ftS~----- 237 (301)
..+||++.|... .+.+.+.+++.|+++..+.+++.-.... . ..++.+.+...|.|||.||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~s 137 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ 137 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccC
Confidence 368888776642 2345667778899988888776421111 1 1234444568999999994
Q ss_pred --HHHHHHHHhhhc
Q 022176 238 --SAVRSWVNLISD 249 (301)
Q Consensus 238 --sav~~~~~~l~~ 249 (301)
..+++|++.+..
T Consensus 138 ipg~LKn~IDrl~~ 151 (279)
T 2fzv_A 138 ITSVMKAQIDHLPL 151 (279)
T ss_dssp ECHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHhh
Confidence 789999999864
No 165
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=70.02 E-value=7.5 Score=30.59 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEEch
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~~~l~~~~~~~~~i~avG~ 136 (301)
+.+++.|++.|+++..+.+ ....+... .+..+..+|.|||-||.= ...|+..+....+.+.++++.|.
T Consensus 23 ~~ia~~l~~~g~~v~~~~~---~~~~~~~~---~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDL---GAAVDLQE---LRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHHTTCEEEEEES---SSCCCHHH---HHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHHCCCeEEEEEC---cCcCCHHH---HHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 3455566777877654433 22112222 233456899999999841 13466656554556777777773
No 166
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=69.86 E-value=51 Score=28.01 Aligned_cols=110 Identities=16% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHH
Q 022176 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWV 244 (301)
Q Consensus 177 ~~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-----sav~~~~ 244 (301)
.+++|++.+..+ +...+...|+.+|++|..+-. .++. +++.+.. .++|+|.+++. ..++.+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~--~vp~----e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGR--DVPA----EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEE--ECCS----HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCH----HHHHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 356888776653 356788899999998876655 2332 2333222 47899998873 3455666
Q ss_pred HhhhcccCCCceEEEECHHHHHH-HHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 245 NLISDTEQWSNSVACIGETTASA-AKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 245 ~~l~~~~~~~~~i~aIG~~Ta~a-l~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+.+++.+. ++++++-|....+. .++.|. +.... +....++.+.+.++.
T Consensus 196 ~~l~~~~~-~~~v~vGG~~~~~~~~~~iga--d~~~~--da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 196 DMLLENGI-KIPFACGGGAVNQDFVSQFAL--GVYGE--EAADAPKIADAIIAG 244 (258)
T ss_dssp HHHHTTTC-CCCEEEESTTCCHHHHHTSTT--EEECS--STTHHHHHHHHHHTT
T ss_pred HHHHhcCC-CCcEEEECccCCHHHHHHcCC--eEEEC--CHHHHHHHHHHHHcc
Confidence 66665433 58888888754443 445563 33333 456666776666543
No 167
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=69.74 E-value=10 Score=31.44 Aligned_cols=111 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-----------eEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.++|+|.-...-+..+++.|.+.|. +..+-. +.+... .+.+.|.++ .+.+.|.||.+.++....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT--TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc--CcchhcEEEEcCCCcHHH
Confidence 4567777665556677777777776 543311 111111 121222221 367899999988765433
Q ss_pred HH--HHHHHcCCCCceEEEE--chhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHH
Q 022176 117 FL--EAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (301)
Q Consensus 117 f~--~~l~~~~~~~~~i~av--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~ 170 (301)
.. ..+++.+ .+.++++. .+...+.+++. |....+.|....+..|+..
T Consensus 86 ~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~ 136 (234)
T 2aef_A 86 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 136 (234)
T ss_dssp HHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHH
Confidence 22 3334433 34566654 56677888888 9987676654444444433
No 168
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=69.74 E-value=17 Score=30.67 Aligned_cols=74 Identities=12% Similarity=-0.025 Sum_probs=49.8
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHH
Q 022176 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~ 118 (301)
..|.||++|||-.. +=...+++.|.+.|++|...- +-. ...+++.+.+++.+...... +++..+++.++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTY--RKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 36889999999843 456789999999999987542 111 12345555665555444444 37889998888
Q ss_pred HHHHH
Q 022176 119 EAWKE 123 (301)
Q Consensus 119 ~~l~~ 123 (301)
+...+
T Consensus 78 ~~~~~ 82 (256)
T 4fs3_A 78 EQIGK 82 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 169
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=69.70 E-value=14 Score=31.17 Aligned_cols=67 Identities=19% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCEEEEEC---------hHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCee--E--ecCCCCHH---HHHHH
Q 022176 229 IPVVAVAS---------PSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV--Y--YPTHPGLE---GWVDS 290 (301)
Q Consensus 229 ~d~I~ftS---------~sav~~~~~~l~~~~--~~~~~i~aIG~~Ta~al~~~G~~~~--~--v~~~ps~e---~ll~a 290 (301)
..+|+||| .+.++...+.++... ..++.+++||.+..+.+++.|.... + +.+.|+.+ .+.+.
T Consensus 58 ~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~~~ 137 (230)
T 1fs0_G 58 VGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKV 137 (230)
T ss_dssp EEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCSHHHHHHHHH
T ss_pred EEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHH
Confidence 45899999 777777766664321 1256899999999999999888653 2 23456655 44444
Q ss_pred HHHHH
Q 022176 291 ILEAL 295 (301)
Q Consensus 291 i~~~~ 295 (301)
|.+.+
T Consensus 138 i~~~~ 142 (230)
T 1fs0_G 138 MLQAY 142 (230)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 170
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=69.22 E-value=14 Score=30.26 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=38.1
Q ss_pred cCCCCEEEEEChHHHHHHH-HhhhcccCCCceEE--EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 226 ALSIPVVAVASPSAVRSWV-NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~~-~~l~~~~~~~~~i~--aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
+.+.|+++.+.+....+.. ....+......+++ +-++...+.+++.|...++.|. +...+.+.+.+
T Consensus 63 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p~----~~~~~~l~~~~ 131 (218)
T 3l4b_C 63 VSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNLT----TLITNTVEALI 131 (218)
T ss_dssp CCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCHH----HHHHHHHHHHH
T ss_pred cccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECHH----HHHHHHHHHHh
Confidence 4688988887766554432 22222111234444 4578888999999987655433 33444444444
No 171
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=69.12 E-value=14 Score=30.92 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=38.2
Q ss_pred HHHHHHHhC-CCeeEEEeeeeeeeC-----------------C--CCcHHHHHHcCCCCEEEEECh-------HHHHHHH
Q 022176 192 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSWV 244 (301)
Q Consensus 192 ~L~~~L~~~-G~~v~~~~vY~~~~~-----------------~--~~~~~~~~~~~~~d~I~ftS~-------sav~~~~ 244 (301)
.+.+.|++. |++|..+.+++.... . +....+.+.+...|.|+|.|| ..++.|+
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~i 102 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFI 102 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHH
Confidence 455566666 888887777754211 1 222344445678999999995 7899999
Q ss_pred Hhhh
Q 022176 245 NLIS 248 (301)
Q Consensus 245 ~~l~ 248 (301)
+.+.
T Consensus 103 Dr~~ 106 (242)
T 1sqs_A 103 ERIG 106 (242)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 9874
No 172
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=69.06 E-value=29 Score=24.93 Aligned_cols=112 Identities=11% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhccc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE 251 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~~ 251 (301)
+.+||++-.+.. +..+.+.|++.|+.|.. +. ...+..+.+ ..+|+|++--. ...-.+++.++...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEI---AH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEE---eC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 468999988765 56788889988875532 11 112222222 57888877532 12233444454432
Q ss_pred C-CCceEEEECH---HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 252 Q-WSNSVACIGE---TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 252 ~-~~~~i~aIG~---~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
. ...+++.++. .....+.+.|... ++....+.+.|++.|.+....+.
T Consensus 77 ~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 77 VANQPKILVVSGLDKAKLQQAVTEGADD-YLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp CSSCCEEEEECCSCSHHHHHHHHHTCCE-EECSSCCHHHHHHHHHHHHC---
T ss_pred ccCCCeEEEEeCCChHHHHHHHHhChHH-HhhCCCCHHHHHHHHHHHcCCCC
Confidence 2 2455555543 2344455678764 66788899999999998875543
No 173
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=68.84 E-value=20 Score=33.96 Aligned_cols=194 Identities=14% Similarity=0.106 Sum_probs=99.5
Q ss_pred chHHHHHHHHhCCCcEEE-eceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH-HcCCCCceEEEEc-hh
Q 022176 61 KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK-EAGTPNVRIGVVG-AG 137 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~-~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~-~~~~~~~~i~avG-~~ 137 (301)
+..++...|++.|+++.. +| .....++ +.++...+.-+..++..-....+.++ +.+.+-+...=+| ..
T Consensus 184 D~~eik~lL~~~Gi~v~~~~~-----gg~~~~e----i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~~ 254 (511)
T 2xdq_B 184 DCRELKQLMADLGIQVNLVIP-----AAATVHD----LQRLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVVE 254 (511)
T ss_dssp HHHHHHHHHHHHTCEEEEEEE-----TTCCTTT----GGGGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHHH
T ss_pred HHHHHHHHHHHCCCeEEEEEC-----CcCcHHH----HHhhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHHH
Confidence 457999999999999983 22 1112222 22444555555555543334455553 3444433334577 67
Q ss_pred hHHHHHHHhhcccCCCceeecCCC-CcHHH---------HHHHhccCCCCCCEEEEEcCCcChhHHHHHH-HhCCCeeEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSK-ATGKI---------LASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVR 206 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~---------L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L-~~~G~~v~~ 206 (301)
|.+.|++..+. .|..-.-.|.. .-.+. +...+......|+++++..+....-.+...| .+.|.+|..
T Consensus 255 T~~~L~~ia~~--~g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv~ 332 (511)
T 2xdq_B 255 TARCIRAIQGV--LNAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVVW 332 (511)
T ss_dssp HHHHHHHHHHH--HHTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHH--hCCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCCEEEE
Confidence 88888876210 02100001110 11111 1111111223688999886666667799999 799999865
Q ss_pred EeeeeeeeCCCCcHHHHHHcC-CCCEEEEE-ChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022176 207 LNTYTTEPVHHVDQTVLKQAL-SIPVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (301)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~~-~~d~I~ft-S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~ 275 (301)
+-+|-.. ......+.+. ..+-+++. ....++.++...+ ..++.-|..-...+++.|+.-
T Consensus 333 ~gt~~~~----~~~~~~~~l~~~~~~v~~~~D~~el~~~i~~~~------pDl~ig~~~~r~~a~k~gip~ 393 (511)
T 2xdq_B 333 AGTYCKY----DADWFRAEVAGFCDEVLITDDHTVVGDAIARVE------PAAIFGTQMERHVGKRLNIPC 393 (511)
T ss_dssp EEESCGG----GHHHHHHHHTTTSSEEEECCCHHHHHHHHHHHC------CSEEEECHHHHHHHHHHTCCE
T ss_pred eecCCCC----chHHHHHHHHhcCCcEEEeCCHHHHHHHHHhcC------CCEEEeccchHHHHHhcCCCe
Confidence 5444322 1121222222 22344444 6556555555442 334545555556667788754
No 174
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=68.45 E-value=5.7 Score=29.75 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-------H--HHHHHHHHHHcCCCCceEEEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-------a--v~~f~~~l~~~~~~~~~i~av 134 (301)
.+++.+++.|+++..+.+ .+.+ . .++..+|.|||-||. . ++.|++.+.. .+.+.+++++
T Consensus 19 ~i~~~l~~~g~~v~~~~~------~~~~-~----~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~ 86 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRF------EDTN-V----DDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLF 86 (137)
T ss_dssp HHHHHHHHTTCCEEEEET------TSCC-H----HHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEE
T ss_pred HHHHHHHhCCCeEEEEEc------ccCC-H----HHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEE
Confidence 444556667888765443 2211 1 134579999999876 2 7788887643 3456777777
Q ss_pred c
Q 022176 135 G 135 (301)
Q Consensus 135 G 135 (301)
|
T Consensus 87 ~ 87 (137)
T 2fz5_A 87 G 87 (137)
T ss_dssp E
T ss_pred E
Confidence 6
No 175
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.02 E-value=28 Score=24.93 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=63.5
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhccc-
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE- 251 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~~- 251 (301)
.+||++-.+.. +..+.+.|++.|+.|... . ...+.++.+ ..+|+|++--. ...-.+++.++...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPM 74 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhc
Confidence 57888888765 677889999998644221 1 122223222 57898887522 12223444444431
Q ss_pred CCCceEEEECHHHH---HHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccCC
Q 022176 252 QWSNSVACIGETTA---SAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 252 ~~~~~i~aIG~~Ta---~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
...++++.++.... ..+...|... ++....+.+.|.+.+..+.+.+.+
T Consensus 75 ~~~~~ii~~s~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 75 EKTSKFVAVSGFAKNDLGKEACELFDF-YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp SSCCEEEEEECC-CTTCCHHHHHHCSE-EEESSCCHHHHHHHHHHHC-----
T ss_pred cCCCCEEEEECCcchhHHHHHHHhhHH-heeCCCCHHHHHHHHHHhhccCCC
Confidence 23566666543221 2344557544 667888999999999988766543
No 176
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=68.02 E-value=8.6 Score=30.19 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH---H--HHHHHHHHHcCCCCceEEEEch
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA---G--SVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a---v--~~f~~~l~~~~~~~~~i~avG~ 136 (301)
+.+++.|++.|+++..+.+-+ .+... .+.++..+|.|||-||.= + ..|++.+....+.+.+++++|.
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~---~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQE---LIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHH---HHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHH---HHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEc
Confidence 345566677788765443321 12222 223446799999998741 1 3566666554456778877763
No 177
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=68.00 E-value=13 Score=32.46 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=38.6
Q ss_pred cccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEece--------------eEeeeC--CCchHHHHHHh
Q 022176 36 QASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL--------------IQHAQG--PDTDRLSSVLN 98 (301)
Q Consensus 36 ~~~~~~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~--------------~~~~~~--~d~~~l~~~l~ 98 (301)
|..+|+++--..+.||+||||-..+ -+..+++.|.+.|++|..+-- +++... .|.+.+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (333)
T 2q1w_A 7 HHHHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIG 86 (333)
T ss_dssp --------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHH
T ss_pred cccccCceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHh
Confidence 3445555666677899999998655 456888999999998886521 122222 23345555553
Q ss_pred cCCCccEEEEeC
Q 022176 99 ADTIFDWIIITS 110 (301)
Q Consensus 99 ~l~~~d~IiftS 110 (301)
. ...|.||...
T Consensus 87 ~-~~~D~vih~A 97 (333)
T 2q1w_A 87 D-LQPDAVVHTA 97 (333)
T ss_dssp H-HCCSEEEECC
T ss_pred c-cCCcEEEECc
Confidence 2 2478888754
No 178
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=67.88 E-value=6 Score=32.96 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=33.2
Q ss_pred cCCCCEEEEEChHHHHHHH--HhhhcccCCCceEEE--ECHHHHHHHHHcCCCeeEecC
Q 022176 226 ALSIPVVAVASPSAVRSWV--NLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~~--~~l~~~~~~~~~i~a--IG~~Ta~al~~~G~~~~~v~~ 280 (301)
+.+.|.++++.+....+.. ..+++.+ .+.++++ -.+...+.+++.|...++.|.
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~G~~~vi~p~ 126 (234)
T 2aef_A 69 VRGARAVIVDLESDSETIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 126 (234)
T ss_dssp CTTCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHHTCSEEECHH
T ss_pred cchhcEEEEcCCCcHHHHHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHCCCCEEECHH
Confidence 4688988888775443332 2233222 2345554 467778889999998766544
No 179
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=67.61 E-value=29 Score=32.24 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=81.9
Q ss_pred CeEEEeCCCCch--HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022176 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (301)
Q Consensus 51 ~~IlitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~ 128 (301)
++|-+.-.-... .++...|++.|+++..++. ....++ +.+++.....+..++..- ...+++++.. +
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~-----~~~~~e----l~~~~~A~~ni~~~~~~~-~~A~~Le~~~--g 264 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLP-----AKRYTE----LPVIDEGYYVAGVNPFLS-RTATTLIRRR--K 264 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEES-----CSSGGG----CCCCCTTCEEEESSTTCH-HHHHHHHHTT--C
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeC-----CCCHHH----HHccccCcEEEEcCHhHH-HHHHHHHHHc--C
Confidence 345444333333 4789999999999986421 122222 335677777777777653 4555664421 3
Q ss_pred ceEEE----Ec-hhhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHh
Q 022176 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (301)
Q Consensus 129 ~~i~a----vG-~~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~ 199 (301)
++.+. +| ..|.+.|++.. ...|.. |+... ...++..+.... ..|+|+++..+....-.+...|.+
T Consensus 265 iP~~~~~~P~G~~~T~~~Lr~ia--~~~g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~e 338 (460)
T 2xdq_A 265 CQLITAPFPIGPDGTRTWIEQIC--ATFGIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIR 338 (460)
T ss_dssp CEEECCCCSBHHHHHHHHHHHHH--HHTTCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHH
T ss_pred CCceecCcCccHHHHHHHHHHHH--HHHCcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHH
Confidence 34333 56 77888888762 112443 22111 112333332211 267899998877777789999999
Q ss_pred CCCeeEEEe
Q 022176 200 RGFEVVRLN 208 (301)
Q Consensus 200 ~G~~v~~~~ 208 (301)
.|.+|..+-
T Consensus 339 lGm~vv~~g 347 (460)
T 2xdq_A 339 CGMRVLEIG 347 (460)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEeC
Confidence 999886643
No 180
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=67.58 E-value=34 Score=25.12 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=67.7
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhccc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDTE 251 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~~ 251 (301)
..+||++-.+.. +..+.+.|+..|..+.. ..+. ...+.++.+ ..+|+|++--. ...-.+++.++...
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v-~~~~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQL-EFVD------NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEE-EEES------SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeE-EEEC------CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 468999888765 56788899999875321 1111 112333333 46888877422 12233445555421
Q ss_pred -CCCceEEEEC----HHHHHHHHHcCCCeeEecCCC-CHHHHHHHHHHHHHcc
Q 022176 252 -QWSNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALREH 298 (301)
Q Consensus 252 -~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~p-s~e~ll~ai~~~~~~~ 298 (301)
...++++.++ +.....+.+.|... ++.... +.+.|.+.|...++.+
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQCMAAGASS-VVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHHHHTTCSE-EEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCcHHHHHHHHHHHHHHH
Confidence 2356676665 34455566788765 556767 8999999988876543
No 181
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=67.49 E-value=11 Score=30.19 Aligned_cols=84 Identities=7% Similarity=-0.035 Sum_probs=48.7
Q ss_pred CeEEEeCC----CCchHHHHHHHHhC---CCcEEEeceeEeeeCCC--------chHHHHHHhcCCCccEEEEeCh----
Q 022176 51 PKVVVTRE----RGKNGKLIKALAKH---RIDCLELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP---- 111 (301)
Q Consensus 51 ~~IlitR~----~~~~~~l~~~L~~~---G~~v~~~P~~~~~~~~d--------~~~l~~~l~~l~~~d~IiftS~---- 111 (301)
|+|++.-. .+....+++.+.+. |.++..+.+.+. |.-+ .+.+....+++..+|.|||.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~-p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGI-PLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC-CCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHC-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 56666432 24566777776542 677776665542 1111 1234444556678999999996
Q ss_pred ---HHHHHHHHHHHHc---CCCCceEEEEc
Q 022176 112 ---EAGSVFLEAWKEA---GTPNVRIGVVG 135 (301)
Q Consensus 112 ---~av~~f~~~l~~~---~~~~~~i~avG 135 (301)
..++.|++.+... .+.+.++++++
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~ 115 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAILG 115 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEEE
Confidence 4677888776432 13445554443
No 182
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.37 E-value=5.7 Score=32.29 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=35.9
Q ss_pred HHHHH-HHhCCCeeEEEeeeeeee--------CCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhc
Q 022176 192 EIEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (301)
Q Consensus 192 ~L~~~-L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~ 249 (301)
.+.+. |.+.|.++..+.+++... ..+....+.+.+...|.|+|.|| ..+++|++.+..
T Consensus 24 ~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 24 YALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp HHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc
Confidence 34555 666788877777654311 00111223334567999999985 578999988754
No 183
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=66.72 E-value=28 Score=30.98 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~~ 128 (301)
+++||++.+-. ++..+.|++.| ++...+. ....+.+++.+ .+.++|.|+..+..-+. .+++.+ ++
T Consensus 2 ~~kvlv~~~~~--~~~~~~l~~~~-~v~~~~~---~~~~~~~~~~~---~~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRVH--EEILQLLAPHC-ELITNQT---DSTLTREEILR---RCRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCCC--HHHHHHHTTTC-EEECCCS---SSCCCHHHHHH---HHTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCCC--HHHHHHHHhCC-eEEEecC---CCCCCHHHHHH---HhCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 46899998654 56678888776 5443221 11112233333 45789999875443332 233322 45
Q ss_pred ceEEEE---chh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----h--cc-------------C---------
Q 022176 129 VRIGVV---GAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--PK-------------N--------- 174 (301)
Q Consensus 129 ~~i~av---G~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----l--~~-------------~--------- 174 (301)
+++++. |-. -.+++.+. |+.+.-.|. .+++.+++. | .+ +
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 665543 322 23567777 998866654 333333221 1 00 0
Q ss_pred -CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcH--------HHHHHcCCCCEEEEEChH
Q 022176 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--------TVLKQALSIPVVAVASPS 238 (301)
Q Consensus 175 -~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--------~~~~~~~~~d~I~ftS~s 238 (301)
...|++|.++.-..-...+++.|+..|.+|. .|++.+...... .+.+.+.+.|+|++.-|.
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~ 210 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQ---YHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPL 210 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEE---EECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCC
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCC
Confidence 1257889999988888899999999998654 454432110000 011113457888887763
No 184
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=66.52 E-value=33 Score=30.33 Aligned_cols=147 Identities=12% Similarity=0.014 Sum_probs=78.4
Q ss_pred CCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~IiftS~~-av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
.+.|.||..... ......+.+.+ .+++++.++..+. .... .....+.+.. ..+..+++.|.+.. .
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~---~~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVER---ADALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHH---TTCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHh---cCceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 578999886433 34445555554 3577877765310 0001 1111122332 34566777776653 4
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-~sav~~~~~~l~~~ 250 (301)
++|.++.++.. ...+.+.|++.|.++.....|.......+....+..+ ..+|+|++.+ ...+..+++.+.+.
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~ 220 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARR 220 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHH
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHc
Confidence 78888876532 2456788889998775433332100011111222222 3689999887 56667777777655
Q ss_pred cCC--CceEEEE
Q 022176 251 EQW--SNSVACI 260 (301)
Q Consensus 251 ~~~--~~~i~aI 260 (301)
+.. ...++..
T Consensus 221 G~~~~~~~~~~~ 232 (385)
T 1pea_A 221 YGDGRRPPIASL 232 (385)
T ss_dssp HCSSCCCCEEES
T ss_pred CCCcCCceEEec
Confidence 432 2455543
No 185
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=66.27 E-value=35 Score=24.82 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhcc-
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDT- 250 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~- 250 (301)
..+||++..+.. +..+.+.|++.|+.|... . ...+.++.+ ..+|+|++--. ...-.+++.++..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV---H------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE---C------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCc
Confidence 468999988765 567888899988764221 1 122233322 57898887421 1222344444442
Q ss_pred cCCCceEEEECHHHHH-HH----HHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 251 EQWSNSVACIGETTAS-AA----KRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 251 ~~~~~~i~aIG~~Ta~-al----~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
...+++++.++..... .. .+.|... ++....+.+.|.+.|...++.+.
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELEFNSQPLAVST-WLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHHHCCTTTCCCE-EECSSCCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEecCCChHHHHHHhhhcCCCE-EEeCCCCHHHHHHHHHHHHHhcC
Confidence 1236777777654332 22 2346544 66777899999999998886543
No 186
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=66.18 E-value=23 Score=33.72 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=54.8
Q ss_pred CEEEEEcCCcChhHHHHHHHhCCCeeEEEee-------------eeeeeCCCCcHHHHHH--cCCCCEEEEEChHHHHHH
Q 022176 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNT-------------YTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSW 243 (301)
Q Consensus 179 ~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v-------------Y~~~~~~~~~~~~~~~--~~~~d~I~ftS~sav~~~ 243 (301)
.+++++....-...+.+.|.+.|.+|..+.. +....-+...++.++. +.+.+.++.|.......+
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~~D~~n~~ 207 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANLSDPDNAN 207 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECSCHHHHHH
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeCCcHHHHH
Confidence 3455555544455555555555554433321 1111122223344444 357888888887766555
Q ss_pred HHhhhcccCCCceEEEE--CHHHHHHHHHcCCCeeEecC
Q 022176 244 VNLISDTEQWSNSVACI--GETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 244 ~~~l~~~~~~~~~i~aI--G~~Ta~al~~~G~~~~~v~~ 280 (301)
.-..-+... +.++++- .+...+.+++.|...++.|+
T Consensus 208 ~~~~ar~~~-~~~iiar~~~~~~~~~l~~~Gad~vi~p~ 245 (565)
T 4gx0_A 208 LCLTVRSLC-QTPIIAVVKEPVHGELLRLAGANQVVPLT 245 (565)
T ss_dssp HHHHHHTTC-CCCEEEECSSGGGHHHHHHHTCSEEECHH
T ss_pred HHHHHHHhc-CceEEEEECCHHHHHHHHHcCCCEEEChH
Confidence 443322212 5555553 56788889999998766544
No 187
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=66.16 E-value=1.9 Score=37.22 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCCchHHHHHHHHhCCCcEEEeceeEee-eCCCchHHHHHHhcCCCccEEEEeC
Q 022176 58 ERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~-~~~d~~~l~~~l~~l~~~d~IiftS 110 (301)
+......+.+.|+..|+++..+|.-+.. ..++. ++.+..||.|||..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 3456678999999999999988542111 11221 12357899999986
No 188
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=66.10 E-value=3.7 Score=32.75 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=51.0
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeC---CCch-HH-HHHHhcCCCccEEEEeChHH-HHHHHHHHHHcCCC-CceEEE
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQG---PDTD-RL-SSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTP-NVRIGV 133 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~---~d~~-~l-~~~l~~l~~~d~IiftS~~a-v~~f~~~l~~~~~~-~~~i~a 133 (301)
....+.+.|+..|+++...|+.+.... .+.+ .+ ...+.-.+.+|.+|+.|.-+ ....++.+.+ . +.++.+
T Consensus 62 ~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~---~~G~~V~v 138 (165)
T 2qip_A 62 KQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQ---RYNKKVTV 138 (165)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHH---HHCCEEEE
T ss_pred hHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHH---HcCcEEEE
Confidence 346788999999999999998754321 1111 11 12332236789999988866 2223344444 2 567777
Q ss_pred Ech--hhHHHHHHH
Q 022176 134 VGA--GTASIFEEV 145 (301)
Q Consensus 134 vG~--~Ta~~L~~~ 145 (301)
+|. .|+..|++.
T Consensus 139 ~g~~~~~s~~L~~~ 152 (165)
T 2qip_A 139 YGVPRLTSQTLIDC 152 (165)
T ss_dssp EECGGGSCHHHHHH
T ss_pred EeCCCcChHHHHHh
Confidence 774 367888776
No 189
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=65.73 E-value=7 Score=35.80 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=90.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~~ 128 (301)
+|+|+++...+. ..+.|++.| ++...|-.. . . .+ .+.++|.++..|..-+. .+++ . .+
T Consensus 3 mmkIl~~~~~p~---~~~~~~~~~-~v~~~~~~~---~-~----~~---~l~~ad~li~~~~~~v~~~ll~---~---~~ 61 (381)
T 3oet_A 3 AMKILVDENMPY---ARELFSRLG-EVKAVPGRP---I-P----VE---ELNHADALMVRSVTKVNESLLS---G---TP 61 (381)
T ss_dssp CCEEEEETTSTT---HHHHHTTSS-EEEEECC-------C----HH---HHTTCSEEEECTTSCBSHHHHT---T---SC
T ss_pred ceEEEECCCCcH---HHHHHhhCC-cEEEeCCCC---C-C----HH---HHCCCEEEEECCCCCCCHHHHc---C---CC
Confidence 589999886643 345666666 555433111 1 1 11 24789999886644332 2222 1 23
Q ss_pred ceEEEE-chhh----HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc---CCCCCCEEEEEcCCcChhHH
Q 022176 129 VRIGVV-GAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK---NGKKKCTVLYPASAKASNEI 193 (301)
Q Consensus 129 ~~i~av-G~~T----a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~---~~~~~~~vLi~rg~~~~~~L 193 (301)
+++++. |.++ .+++++. |+.+.-.|. .+++.+++. +.+ ....+++|.+++-......+
T Consensus 62 Lk~I~~~~~G~D~iD~~~~~~~------gI~v~n~pg-~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~v 134 (381)
T 3oet_A 62 INFVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRL 134 (381)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHH
T ss_pred CEEEEEccccccccCHHHHHhC------CEEEEECCC-cCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHH
Confidence 555442 2221 3567788 998866654 344443332 111 12368899999988888899
Q ss_pred HHHHHhCCCeeEEEeeeeeeeCC-CCcHHHHHHcCCCCEEEEEChHH
Q 022176 194 EEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 194 ~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~I~ftS~sa 239 (301)
++.|+..|.+|..+..+...... .....+.+.+.+.|+|++.-|.+
T Consensus 135 A~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 181 (381)
T 3oet_A 135 QTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLY 181 (381)
T ss_dssp HHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCC
T ss_pred HHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCC
Confidence 99999999977555443221100 00111112234678888887644
No 190
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=65.01 E-value=36 Score=24.43 Aligned_cols=112 Identities=7% Similarity=0.078 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh----HHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~----~av~~f~~~l~~ 123 (301)
.+++||+.-... ....+...|++.|+++... .+..+....+.. ..+|.|++--. ++.+ +++.+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLST-FEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-TCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 357899887654 4467788898888865432 122333334433 56888877532 3444 5566665
Q ss_pred cCC-CCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 124 AGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 124 ~~~-~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
... ...+++.++........+.+.. |.. +++..+.+.+.|...+...
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE---GAD-DYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH---TCC-EEECSSCCHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh---ChH-HHhhCCCCHHHHHHHHHHH
Confidence 443 4677777766543333332211 654 4667778899998887654
No 191
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=64.87 E-value=8.6 Score=32.83 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=43.8
Q ss_pred CCCCCccccccccccc--cCCCCCCCeEEEe----CCCCchHHHH----HHHHhCCCcEEEeceeEeeeCCC-----chH
Q 022176 28 LPFQFSRIQASSDATS--ASASNSNPKVVVT----RERGKNGKLI----KALAKHRIDCLELPLIQHAQGPD-----TDR 92 (301)
Q Consensus 28 ~~~~~~~~~~~~~~~~--~~~~l~g~~Ilit----R~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~d-----~~~ 92 (301)
+++...|.-.+.++.. ...+...++||+. |+...+..++ +.+++.|+++..+-+.+. +..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~~~d~ 88 (247)
T 2q62_A 10 LPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPVSHPK 88 (247)
T ss_dssp CTTSCTTTCCCCCGGGGCCCCCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCTTSHH
T ss_pred CchhhhhcCCCCChhhhhhhccCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCCCCHH
Confidence 3444444444333332 2334456788775 3323344444 445667998888776553 2211 123
Q ss_pred HHHHHhcCCCccEEEEeChH
Q 022176 93 LSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 93 l~~~l~~l~~~d~IiftS~~ 112 (301)
+....+.+...|.|||.||.
T Consensus 89 ~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 89 VQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp HHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHCCEEEEEeCC
Confidence 44444455677888887763
No 192
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=64.86 E-value=67 Score=27.58 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred CcHHHHHHHhccCCCCCCEEEEEcCCcC-----hhHHHHH--------HHhC-CCeeEEEeeeeeeeCCCCcHHHHHHc-
Q 022176 162 ATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEG--------LSNR-GFEVVRLNTYTTEPVHHVDQTVLKQA- 226 (301)
Q Consensus 162 ~~~e~L~~~l~~~~~~~~~vLi~rg~~~-----~~~L~~~--------L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~- 226 (301)
...+.+...+........+|++.+.... ...+... |+.+ |++|..+-. .++ .+++.+..
T Consensus 104 ~~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--~vp----~e~iv~aa~ 177 (262)
T 1xrs_B 104 LSMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--QVA----NEDFIKKAV 177 (262)
T ss_dssp CCHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--SBC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--CCC----HHHHHHHHH
Confidence 3445555566544333457776554432 2233333 7788 876644433 222 23343332
Q ss_pred -CCCCEEEEEChH-----H---HHHHHHhhhcccCC-CceEEEECHH-HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 227 -LSIPVVAVASPS-----A---VRSWVNLISDTEQW-SNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 227 -~~~d~I~ftS~s-----a---v~~~~~~l~~~~~~-~~~i~aIG~~-Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
.++|+|.+++.. . ++.+.+.+++.+.. ++++++=|.. +.+.+++.|... +..+......+++.+.+.+
T Consensus 178 e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~iGad~-~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 178 ELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDA-GFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp HTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHH
T ss_pred HcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHcCCeE-EECCchHHHHHHHHHHHHH
Confidence 588999887733 2 33445555543322 3777777764 455567789766 4467678888888888776
Q ss_pred Hcc
Q 022176 296 REH 298 (301)
Q Consensus 296 ~~~ 298 (301)
...
T Consensus 257 ~~~ 259 (262)
T 1xrs_B 257 NDR 259 (262)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
No 193
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=64.72 E-value=43 Score=30.70 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=63.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEecee------------EeeeCC--CchHHHHHHhcCCCccEEEEeChHHHH
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGS 115 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~--d~~~l~~~l~~l~~~d~IiftS~~av~ 115 (301)
+++|+|.--..-+..+++.|.+.|++++.+-.= .+...+ +.+.|..+ .+...|.||.+.++...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~a--gi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA--GAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHT--TTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhc--CCCccCEEEECCCChHH
Confidence 567888877667788899999999887765321 111111 21222221 46789999999887554
Q ss_pred HH--HHHHHHcCCCCceEEEE--chhhHHHHHHHhhcccCCCceeecCC
Q 022176 116 VF--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPS 160 (301)
Q Consensus 116 ~f--~~~l~~~~~~~~~i~av--G~~Ta~~L~~~~~~~~~G~~~~~~p~ 160 (301)
.. ...+++.+ ++.+|++. .+.-...|++. |...++.|.
T Consensus 82 n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~ 123 (413)
T 3l9w_A 82 NLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETT
T ss_pred HHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECcc
Confidence 43 33344443 45566654 66777788888 987655444
No 194
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=64.23 E-value=53 Score=29.01 Aligned_cols=146 Identities=7% Similarity=-0.089 Sum_probs=81.8
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 100 l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
-.+.+.||-.+........+.+.+. +++++..+... . +... .......|.. ..+..+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~~-~-~~~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYSA-K-LLVK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCCG-G-GTTS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccch-h-hcCC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 3678898876666666666666553 56777654332 2 1111 2222223332 23455666665521 24
Q ss_pred CEEEEEcC-Cc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--c--CCCCEEEEECh-HHHHHHHHhh
Q 022176 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSWVNLI 247 (301)
Q Consensus 179 ~~vLi~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~--~~~d~I~ftS~-sav~~~~~~l 247 (301)
++|.++.+ +. ..+.+.+.|++.|.++.....|... ..+....+.. + .++|+|++.+. ..+..+++.+
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~ 219 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAM 219 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence 68888876 32 2456778888999877555555431 1111222222 2 57898888766 6777777777
Q ss_pred hcccCCCceEEEE
Q 022176 248 SDTEQWSNSVACI 260 (301)
Q Consensus 248 ~~~~~~~~~i~aI 260 (301)
.+.+ .+.+++..
T Consensus 220 ~~~g-~~~~~~~~ 231 (391)
T 3eaf_A 220 AKVG-LDAFLLTN 231 (391)
T ss_dssp HHHT-CCCEEEEC
T ss_pred HHCC-CCceEEEe
Confidence 6654 35566544
No 195
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=63.85 E-value=15 Score=30.99 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=28.2
Q ss_pred CCCCCCeEEEeCC-----------------CCchHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRE-----------------RGKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~-----------------~~~~~~l~~~L~~~G~~v~~~ 79 (301)
+++.|++||||-. ..-+..+++.|.++|++|..+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999987 346789999999999999864
No 196
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=63.53 E-value=49 Score=32.88 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChH-----HHHHHHH
Q 022176 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVN 245 (301)
Q Consensus 178 ~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~s-----av~~~~~ 245 (301)
..+|++..-.. +.......|+..|++|....+ ...++++.+.. .+.|+|.+.|.. .+..+.+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL------FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT------TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHH
Confidence 35777654432 245677889999998855333 22234444432 588999998733 4455566
Q ss_pred hhhcccCCCceEEEEC---HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 246 LISDTEQWSNSVACIG---ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 246 ~l~~~~~~~~~i~aIG---~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
.+++.+..++++++=| +.-.+.+++.|+..++ ....+...+++.+.+.++
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f-~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIY-TPGTVIPESAISLVKKLR 722 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEE-CTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEE-cCCccHHHHHHHHHHHHH
Confidence 6665544356666554 2235778999987755 555678888888877664
No 197
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=63.35 E-value=11 Score=33.22 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=82.5
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChH--HH--HHHHHHHHHc-CCCCceEEEEch
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLEAWKEA-GTPNVRIGVVGA 136 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~--av--~~f~~~l~~~-~~~~~~i~avG~ 136 (301)
-.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|- .+ +..++.+... ..+++. +
T Consensus 58 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~-----~ 129 (300)
T 4a26_A 58 KHKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALL-----P 129 (300)
T ss_dssp HHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCC-----c
Confidence 345677889988765542221 123444444 345689999998872 11 2222222111 112222 2
Q ss_pred hhHHHHHHHhhcccCCC-ceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcC-CcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~-~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.-...|-. |- ...+.| -|+.+.++.|.... ..|++++++.. ......+...|.+.|++|+.+.-+..
T Consensus 130 ~N~G~l~~-------g~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~ 200 (300)
T 4a26_A 130 VNVGLLHY-------KGREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS 200 (300)
T ss_dssp HHHHHHHC-------TTCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC
T ss_pred ceEEEeec-------CCCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 22222211 21 222444 46777777776543 37889988874 44577899999999998765543211
Q ss_pred eeCCCCcHHHH--HHcCCCCEEEEEChH
Q 022176 213 EPVHHVDQTVL--KQALSIPVVAVASPS 238 (301)
Q Consensus 213 ~~~~~~~~~~~--~~~~~~d~I~ftS~s 238 (301)
.+. +...+.|+|+-+-+.
T Consensus 201 --------~l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 201 --------TEDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp --------HHHHHHHHHTCSEEEECSCC
T ss_pred --------CchhhhhhccCCEEEECCCC
Confidence 122 334678988887774
No 198
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=62.83 E-value=54 Score=28.97 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=87.8
Q ss_pred CeEEEeCCCCchHHHHHHHHh-CCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022176 51 PKVVVTRERGKNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~-~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~~ 128 (301)
|+|+++..........+.|.+ .|+++...+- .. +.++ ..+.+.++|.|+..+...+ ..+++.+.+. +
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----YL-NTKE---TAEMAAGFDAVILRGNCFANKQNLDIYKKL---G 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----CS-CSHH---HHHTTTTCSEEEECTTCCBCHHHHHHHHHH---T
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----CC-CHHH---HHHHhcCCeEEEEeCCCCCCHHHHhhCccc---C
Confidence 478886544444555556643 5666544321 11 1122 2335688999887542222 2344545432 2
Q ss_pred ceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHH----H---hcc---------------C-------
Q 022176 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILAS----E---LPK---------------N------- 174 (301)
Q Consensus 129 ~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~----~---l~~---------------~------- 174 (301)
+|+++ +|-. -.+++++. |+.+.-.|. ++++.+++ . +.+ +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 44444 2222 23566777 988766654 23322211 1 111 1
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-----HHHHHHcCCCCEEEEEChH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-----QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-----~~~~~~~~~~d~I~ftS~s 238 (301)
...+++|.++.-..-...+.+.|+..|.+|. +|++.+..... ..+.+.+.+.|+|++.-|.
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~ 208 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVI---GEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPY 208 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCccHHHHhccccCCHHHHHhhCCEEEEecCC
Confidence 1256789999887778889999999998764 44443221100 0111123467888887554
No 199
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=62.80 E-value=7 Score=33.51 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=37.3
Q ss_pred CCeEEEeCC--CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 50 NPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 50 g~~IlitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
+|+|++.+. .+.-..+...|++.|+++..+.+..-.+.++ .+.++|.||++-.
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCC
Confidence 577888764 3456788899999999988776655433321 2457899998743
No 200
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=62.69 E-value=82 Score=27.81 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=86.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~ 129 (301)
+++||++.+-. ++..+.|++.+.++.... ..+.. . +.+.++|.++..+.. +..+ + ....+++
T Consensus 1 m~kil~~~~~~--~~~~~~L~~~~~~~~~~~------~~~~~--~---~~~~~ad~l~~~~~~-~~~~---l-~~~~~~L 62 (324)
T 3evt_A 1 MSLVLMAQATK--PEQLQQLQTTYPDWTFKD------AAAVT--A---ADYDQIEVMYGNHPL-LKTI---L-ARPTNQL 62 (324)
T ss_dssp -CEEEECSCCC--HHHHHHHHHHCTTCEEEE------TTSCC--T---TTGGGEEEEESCCTH-HHHH---H-HSTTCCC
T ss_pred CcEEEEecCCC--HHHHHHHHhhCCCeEEec------CCccC--h---HHhCCcEEEEECCcC-hHHH---H-HhhCCCc
Confidence 47899998764 577788998876543221 11100 0 124567766544432 2222 2 1123456
Q ss_pred eEEEE-chh----hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h----cc-----------------CCC
Q 022176 130 RIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L----PK-----------------NGK 176 (301)
Q Consensus 130 ~i~av-G~~----Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l----~~-----------------~~~ 176 (301)
|+++. |.+ -.+++.+. |+.+.-.|. .+++.+++. + .. ...
T Consensus 63 k~I~~~~~G~d~id~~~~~~~------gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l 135 (324)
T 3evt_A 63 KFVQVISAGVDYLPLKALQAA------GVVVANTSG-IHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTL 135 (324)
T ss_dssp CEEECSSSCCTTSCHHHHHHT------TCEEECCTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCS
T ss_pred eEEEECCccccccCHHHHHHC------CcEEEECCC-cCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccc
Confidence 66552 222 24566777 888765554 222222211 0 00 112
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC--Cc-----HHHHHHcCCCCEEEEEChH
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VD-----QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~-----~~~~~~~~~~d~I~ftS~s 238 (301)
.|++|.++.-..-...+++.|+..|.+|. .|++.+... .. ..+.+.+.+.|+|++.-|.
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPl 201 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKASALGMHVI---GVNTTGHPADHFHETVAFTATADALATANFIVNALPL 201 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE---EEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCC
T ss_pred cCCeEEEECcCHHHHHHHHHHHhCCCEEE---EECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCC
Confidence 57889999888888899999999998765 454432211 00 0111123467888887653
No 201
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=62.61 E-value=76 Score=27.43 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=90.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeE------eeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHHHHHH
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ------HAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAW 121 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~------~~~~~d~~~l~~~l~~l~~~d~I-iftS~~av~~f~~~l 121 (301)
.++|+|.-... ......+.+.+.|++++ .|+-. +...+-+..+.+...+ ...|.+ +||.+..+...++.+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~-~~~Dv~Ii~vp~~~~~~~~~ea 84 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAVAH-HEVDASIIFVPAPAAADAALEA 84 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHH-SCCSEEEECCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEE-EEECCCCCCceECCEEeeCCHHHHhhc-CCCCEEEEecCHHHHHHHHHHH
Confidence 46788876533 35667778888898833 23211 1001112334444422 256655 577788877777777
Q ss_pred HHcCCCCceEEEEch------hhHHHHHHHhhcccCCCceeecCCCC---cH-HHHHHHhccCCCCCCEEEEEcCCcC-h
Q 022176 122 KEAGTPNVRIGVVGA------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPASAKA-S 190 (301)
Q Consensus 122 ~~~~~~~~~i~avG~------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~l~~~~~~~~~vLi~rg~~~-~ 190 (301)
.+.+.+.+-+++-|- .-.+.+++. |+.+ +.|... +. ..+.-.+.....+.++|-++.-.+. .
T Consensus 85 ~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~------gi~v-igPNc~Gii~~~~~~~~~~~~~~~~~G~va~vsqSG~l~ 157 (288)
T 1oi7_A 85 AHAGIPLIVLITEGIPTLDMVRAVEEIKAL------GSRL-IGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLT 157 (288)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-EESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EeCCCCeEEcCCCceeEEcccCCCCCCCEEEEECCHHHH
Confidence 665432222222221 223344445 7753 334321 11 1110111211123456766554443 4
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 237 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~I~ftS~ 237 (301)
..+.+.+.++|.-+..+.-.-.... .....++++.+ .+-++|++..-
T Consensus 158 ~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E 208 (288)
T 1oi7_A 158 YEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGE 208 (288)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 5677888889988877777666543 22233444433 34567776644
No 202
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=62.61 E-value=82 Score=27.77 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=43.1
Q ss_pred cCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEE---CH--HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 226 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE--TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aI---G~--~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+...|+++..|... .+++.+.. .++++++ +. ..++.+.+.|.-..+.+...+.+.|.++|.+.+.++
T Consensus 306 l~~ad~~v~~~g~~--t~~Ea~a~----G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~ 377 (412)
T 3otg_A 306 LPHVDLVVHHGGSG--TTLGALGA----GVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEE 377 (412)
T ss_dssp GGGCSEEEESCCHH--HHHHHHHH----TCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCH
T ss_pred HhcCcEEEECCchH--HHHHHHHh----CCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCH
Confidence 45678888777632 34444432 5666664 32 356778887876544344568999999999887653
No 203
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=62.42 E-value=39 Score=24.47 Aligned_cols=112 Identities=12% Similarity=0.091 Sum_probs=61.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe-----ChHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLE 119 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift-----S~~av~~f~~ 119 (301)
.+..+++||+.-... ....+...|++.|+++.. . ..+.++....+.. ..+|.|++- ..++.+ +++
T Consensus 5 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~-----~--~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~-~~~ 75 (140)
T 3cg0_A 5 ASDDLPGVLIVEDGRLAAATLRIQLESLGYDVLG-----V--FDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVE-TAA 75 (140)
T ss_dssp ---CCCEEEEECCBHHHHHHHHHHHHHHTCEEEE-----E--ESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHH-HHH
T ss_pred cCCCCceEEEEECCHHHHHHHHHHHHHCCCeeEE-----E--ECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHH-HHH
Confidence 345578899887654 445778888888877542 1 1122333333423 468988875 245554 556
Q ss_pred HHHHcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 120 AWKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+.+. .+++++++.. .......+.+. .|.. ++...+.+.+.|...+.
T Consensus 76 ~l~~~--~~~~ii~ls~~~~~~~~~~~~~---~g~~-~~l~kp~~~~~l~~~i~ 123 (140)
T 3cg0_A 76 RLAAG--CNLPIIFITSSQDVETFQRAKR---VNPF-GYLAKPVAADTLHRSIE 123 (140)
T ss_dssp HHHHH--SCCCEEEEECCCCHHHHHHHHT---TCCS-EEEEESCCHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEecCCCHHHHHHHHh---cCCC-EEEeCCCCHHHHHHHHH
Confidence 66554 5677766643 33333333321 1544 35556677888777664
No 204
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=62.36 E-value=4.9 Score=35.19 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=24.6
Q ss_pred CCCCeEEEeCCCCc--------hHHHHHHHHhCCCcEEEeceeEee
Q 022176 48 NSNPKVVVTRERGK--------NGKLIKALAKHRIDCLELPLIQHA 85 (301)
Q Consensus 48 l~g~~IlitR~~~~--------~~~l~~~L~~~G~~v~~~P~~~~~ 85 (301)
...|+|||.-..++ .+...+.|++.|.+|..+-++...
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~ 65 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMR 65 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence 45678887543322 245667788999999988776543
No 205
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=62.14 E-value=15 Score=31.91 Aligned_cols=110 Identities=13% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCC-cHH-HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCC
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQT-VLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~-~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~ 254 (301)
.+++|.++..- +.+.+.++ .+. ++.+++..+.... +.. ....+...|++++|.+.-+..=++.+-......
T Consensus 140 ~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 140 KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccC
Confidence 57899999884 44555554 455 5677777665432 112 222357899999999988766554443221113
Q ss_pred ceEEEECHHHHHH--HHHcCCCeeEecCCCCHHHHHHHHHH
Q 022176 255 NSVACIGETTASA--AKRLGLKNVYYPTHPGLEGWVDSILE 293 (301)
Q Consensus 255 ~~i~aIG~~Ta~a--l~~~G~~~~~v~~~ps~e~ll~ai~~ 293 (301)
..++.+||+|.-. +.++|+..+-=..-.+.+.+++.|.+
T Consensus 213 ~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~ 253 (270)
T 2h1q_A 213 RRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTT
T ss_pred CeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHc
Confidence 4788899986432 44578875432222468888887754
No 206
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=62.06 E-value=15 Score=29.38 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=42.0
Q ss_pred CEEEEEcCCc----ChhHHHHHHHh---CCCeeEEEeeeeeeeCC----------CCcHHHHHHcCCCCEEEEECh----
Q 022176 179 CTVLYPASAK----ASNEIEEGLSN---RGFEVVRLNTYTTEPVH----------HVDQTVLKQALSIPVVAVASP---- 237 (301)
Q Consensus 179 ~~vLi~rg~~----~~~~L~~~L~~---~G~~v~~~~vY~~~~~~----------~~~~~~~~~~~~~d~I~ftS~---- 237 (301)
.+||++-|.. ....+.+.+.+ .|.++..+.+++ .+.- +....+.+.+...|.|+|.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 4676665553 23445555543 366777777665 2210 011223344568999999995
Q ss_pred ---HHHHHHHHhhhc
Q 022176 238 ---SAVRSWVNLISD 249 (301)
Q Consensus 238 ---sav~~~~~~l~~ 249 (301)
..++.|++.+..
T Consensus 86 ~~p~~lK~~iD~~~~ 100 (193)
T 1rtt_A 86 SMAGVLKNAIDWASR 100 (193)
T ss_dssp EECHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhcc
Confidence 789999998864
No 207
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=61.98 E-value=81 Score=27.54 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=90.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCC
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~ 127 (301)
..|+|+++.+-. ....+.|++.|+++.. ....+.+++. +.+.++|.|+..+..-+ ..+++.+ +
T Consensus 4 ~~mkil~~~~~~--~~~~~~l~~~~~~v~~------~~~~~~~~~~---~~~~~~d~~i~~~~~~~~~~~l~~~-----~ 67 (313)
T 2ekl_A 4 YTVKALITDPID--EILIKTLREKGIQVDY------MPEISKEELL---NIIGNYDIIVVRSRTKVTKDVIEKG-----K 67 (313)
T ss_dssp CCCEEEECSCCC--HHHHHHHHHTTCEEEE------CTTCCHHHHH---HHGGGCSEEEECSSSCBCHHHHHHC-----T
T ss_pred cceEEEEECCCC--HHHHHHHHhCCcEEEe------CCCCCHHHHH---HHhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 357899987643 4556788888866532 1111223333 34578898887542211 1223322 3
Q ss_pred CceEEE-Echh----hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hc-c------------C------CC
Q 022176 128 NVRIGV-VGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-K------------N------GK 176 (301)
Q Consensus 128 ~~~i~a-vG~~----Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~-~------------~------~~ 176 (301)
++|+++ .|.+ -.+++.+. |+.+.-.|.. +++.+++. +. + | ..
T Consensus 68 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l 140 (313)
T 2ekl_A 68 KLKIIARAGIGLDNIDTEEAEKR------NIKVVYAPGA-STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLEL 140 (313)
T ss_dssp TCCEEEECSSCCTTBCHHHHHHT------TCEEECCTTT-THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCeEEEEcCCCCCccCHHHHHhC------CeEEEeCCCC-CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCC
Confidence 555544 2222 23566777 9887666643 33332221 11 1 1 23
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-------HHHHHHcCCCCEEEEEChH
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-------QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~I~ftS~s 238 (301)
.+++|.++.-..-...+.+.|+..|.+|. +|++.+..... ....+.+.+.|+|++.-|.
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~ 206 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKVL---AYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTV 206 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccC
Confidence 67899999888888899999999998764 55443211000 0011112457888887764
No 208
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=61.85 E-value=22 Score=30.89 Aligned_cols=109 Identities=12% Similarity=-0.056 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-HH-HHHHcCCCCEEEEEChHHHHHHHHhhhcccCCC
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QT-VLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~-~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~ 254 (301)
+++||.++..- + +.+.+.+.+.+ +.+.++.|..... .. ....+...|++++|.+.-+..=++.+-+.....
T Consensus 140 ~g~kV~vIG~f---P-~i~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a 212 (270)
T 3l5o_A 140 KGKKVGVVGHF---P-HLESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---T-THHHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCc---h-hHHHHHhcCCC---EEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCC
Confidence 57899999754 2 34556666665 4566666654432 22 222357899999999998776555443321113
Q ss_pred ceEEEECHHHHH--HHHHcCCCeeEecCCCCHHHHHHHHH
Q 022176 255 NSVACIGETTAS--AAKRLGLKNVYYPTHPGLEGWVDSIL 292 (301)
Q Consensus 255 ~~i~aIG~~Ta~--al~~~G~~~~~v~~~ps~e~ll~ai~ 292 (301)
..++-+||+|-- .+.++|+..+-=..-.+.+.+++.+.
T Consensus 213 ~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 213 RRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVA 252 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHT
T ss_pred CEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHh
Confidence 457778998632 25567887532122246777777765
No 209
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=61.77 E-value=61 Score=28.88 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCEEEEEc-CCcCh-----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChH-------HHHHHH
Q 022176 178 KCTVLYPA-SAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWV 244 (301)
Q Consensus 178 ~~~vLi~r-g~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~s-------av~~~~ 244 (301)
.++++++- +..++ +.+.+.|.+.|+++..+.+. +.....+...+.++|.|+|.||. .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHH
Confidence 45665543 33332 34566777778765444332 22223344445789999999963 578888
Q ss_pred HhhhcccCCCceEEEEC---------HHHHHHHHHcCCCee----EecCCCCHHH
Q 022176 245 NLISDTEQWSNSVACIG---------ETTASAAKRLGLKNV----YYPTHPGLEG 286 (301)
Q Consensus 245 ~~l~~~~~~~~~i~aIG---------~~Ta~al~~~G~~~~----~v~~~ps~e~ 286 (301)
+.+......+.+++++| ....+.+.+.|+.++ .+...|+.++
T Consensus 327 ~~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~ 381 (402)
T 1e5d_A 327 QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHAD 381 (402)
T ss_dssp HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHH
T ss_pred HHhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHH
Confidence 87654222233333221 234555666787642 2344566554
No 210
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=61.66 E-value=5.2 Score=32.96 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=38.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift 109 (301)
.+.|+++|||-... =...+++.|.+.|++|...-.-.-....|.+.+++.++.++..|.+|..
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~n 66 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVT 66 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEEC
Confidence 46789999998764 4568999999999987754322111222334455554444556666543
No 211
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=61.62 E-value=42 Score=24.11 Aligned_cols=111 Identities=11% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~ 122 (301)
+.+++||+.-... ....+...|++.|+..+ .. . .+..+....+.....+|.|+.- ..++.+ +++.+.
T Consensus 3 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v----~~-~--~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~-~~~~lr 74 (129)
T 3h1g_A 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDV----LE-A--EHGVEAWEKLDANADTKVLITDWNMPEMNGLD-LVKKVR 74 (129)
T ss_dssp ---CCEEEECSCHHHHHHHHHHHHHTTCCCE----EE-E--SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHH-HHHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCcEE----EE-e--CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 4567899887654 45677788999998521 11 1 1222222233333468877752 234555 455565
Q ss_pred HcC-CCCceEEEEchh-hHH---HHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 123 EAG-TPNVRIGVVGAG-TAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 123 ~~~-~~~~~i~avG~~-Ta~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
+.. ..+++++++... ... ...+. |.. ++...+.+.+.|...+..
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 75 SDSRFKEIPIIMITAEGGKAEVITALKA------GVN-NYIVKPFTPQVLKEKLEV 123 (129)
T ss_dssp TSTTCTTCCEEEEESCCSHHHHHHHHHH------TCC-EEEESCCCHHHHHHHHHH
T ss_pred hcCCCCCCeEEEEeCCCChHHHHHHHHc------Ccc-EEEeCCCCHHHHHHHHHH
Confidence 532 356777766543 222 23334 654 366677888888877754
No 212
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=61.43 E-value=27 Score=30.14 Aligned_cols=86 Identities=12% Similarity=-0.074 Sum_probs=47.6
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCC-
Q 022176 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI- 102 (301)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~- 102 (301)
+..+-.++-++..-+ ..|.||.+|||-... =...+++.|.+.|++|...-. +.+.+++..++++.
T Consensus 10 ~~~~~~~n~~~~~Ms------~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r-------~~~~l~~~~~~~g~~ 76 (273)
T 4fgs_A 10 GVDLGTENLYFQSMT------QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR-------RKDVLDAAIAEIGGG 76 (273)
T ss_dssp ---------------------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHCTT
T ss_pred CCCccccccchhhhc------chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC-------CHHHHHHHHHHcCCC
Confidence 334444444554423 569999999997654 456899999999999875421 22445555544432
Q ss_pred ccEEE--EeChHHHHHHHHHHHH
Q 022176 103 FDWII--ITSPEAGSVFLEAWKE 123 (301)
Q Consensus 103 ~d~Ii--ftS~~av~~f~~~l~~ 123 (301)
.-.+. +++...++.+++...+
T Consensus 77 ~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 77 AVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCCHHHHHHHHHHHHH
Confidence 11111 4788899988877654
No 213
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=61.30 E-value=28 Score=30.84 Aligned_cols=148 Identities=8% Similarity=0.013 Sum_probs=83.1
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCCC
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKC 179 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~~ 179 (301)
++.+.||-.+........+.+.+. +++++..+. +....... . ......+.|.. ..+..+++.+.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~---~-~~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP---N-NDYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS---S-CTTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC---C-CCceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 478888886666566666666654 466666433 22222111 0 01111123332 23455666665532 247
Q ss_pred EEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE-EChHHHHHHHHhhhccc
Q 022176 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDTE 251 (301)
Q Consensus 180 ~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f-tS~sav~~~~~~l~~~~ 251 (301)
+|.++..+.. .+.+.+.|++.|.++.....|... ..+....+..+ .++|+|++ .+...+..+++.+.+.+
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g 222 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLG 222 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcC
Confidence 8888765532 346788899999987655555432 11222223222 57898885 77788888888887654
Q ss_pred CCCceEEEE
Q 022176 252 QWSNSVACI 260 (301)
Q Consensus 252 ~~~~~i~aI 260 (301)
.+.+++..
T Consensus 223 -~~~~~~~~ 230 (392)
T 3lkb_A 223 -LKMRHLGA 230 (392)
T ss_dssp -CCCEEEEC
T ss_pred -CCceEEEe
Confidence 35666654
No 214
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=61.27 E-value=35 Score=24.96 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=60.9
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC-----hHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS-----~~av~~f~~~l 121 (301)
..+++||+.-... ....+...|++.|+++... .+..+....+.+-..+|.|++-- .++.+ +++.+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l 73 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ-TALAI 73 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHH-HHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHH-HHHHH
Confidence 3568899987654 4567888899999765421 12233333443325789888742 34554 45556
Q ss_pred HHcCCCCceEEEEchhhH-HHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 122 KEAGTPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~Ta-~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+. ++++++++..... ....+.+. .|.. +++..+.+.+.|...+.
T Consensus 74 ~~~--~~~~ii~ls~~~~~~~~~~~~~---~g~~-~~l~KP~~~~~l~~~i~ 119 (140)
T 3h5i_A 74 QQI--SELPVVFLTAHTEPAVVEKIRS---VTAY-GYVMKSATEQVLITIVE 119 (140)
T ss_dssp HHH--CCCCEEEEESSSSCCCCGGGGG---SCEE-EEEETTCCHHHHHHHHH
T ss_pred HhC--CCCCEEEEECCCCHHHHHHHHh---CCCc-EEEeCCCCHHHHHHHHH
Confidence 553 4667766654432 22222210 1543 45666777888776664
No 215
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.22 E-value=38 Score=28.46 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~T 138 (301)
.-+.+.|+++|.++............+ ...+.+.|..-.+.|+|+..+-. +...++.+.+.+++++.++..+...
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~ 235 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLE 235 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 456677888887765544433322222 24556666555678999988887 5667888888888778888887655
No 216
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=61.15 E-value=4.6 Score=34.08 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred CEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeee--CCC----------------------------CcH
Q 022176 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEP--VHH----------------------------VDQ 220 (301)
Q Consensus 179 ~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~--~~~----------------------------~~~ 220 (301)
+|||++-|... .+.+.+.|++.|.+|..+.+|+... .-. ...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 56776655432 2346777788899999999987531 100 011
Q ss_pred H---HHHHcCCCCEEEEECh-------HHHHHHHHhhh
Q 022176 221 T---VLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (301)
Q Consensus 221 ~---~~~~~~~~d~I~ftS~-------sav~~~~~~l~ 248 (301)
. ..+.+...|.|+|.+| ..++.|++.+-
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 1 2223467899999886 67899998763
No 217
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=61.14 E-value=44 Score=24.24 Aligned_cols=110 Identities=8% Similarity=0.048 Sum_probs=65.7
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHHhhhc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVNLISD 249 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-----sav~~~~~~l~~ 249 (301)
..+||++-.+.. +..+.+.|++.|++|... . ...+.++.+ ..+|+|++--. ...-.+++.++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~ 76 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCF---A------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVK 76 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEE---S------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEe---C------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHh
Confidence 358999887765 567888898888755321 1 112222222 35787777421 222334444444
Q ss_pred ccCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 250 TEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 250 ~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.. .+++++.++. .....+.+.|... ++....+.+.|.+.|.+.+...
T Consensus 77 ~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 77 RG-FHLPTIVMASSSDIPTAVRAMRASAAD-FIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp TT-CCCCEEEEESSCCHHHHHHHHHTTCSE-EEESSBCHHHHHHHHHHHHHHH
T ss_pred CC-CCCCEEEEEcCCCHHHHHHHHHcChHH-heeCCCCHHHHHHHHHHHHhcc
Confidence 32 3566665532 3344556678765 5677789999999999887554
No 218
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=61.00 E-value=75 Score=27.11 Aligned_cols=145 Identities=9% Similarity=0.080 Sum_probs=79.2
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCc--eeecCCC-CcHHHHHHHhccCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD--VAFSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~--~~~~p~~-~~~e~L~~~l~~~~~ 176 (301)
.+.|.||.. +........+.+.+. +++++..+... ..+... +.. ..+.|.. ..+..+++.|.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATN-PELTQR------GYQHIMRTAGLDSSQGPTAAKYILETV- 136 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCC-GGGGSS------CCSSEEECSCCGGGHHHHHHHHHHHTT-
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCC-hHHhcC------CCCcEEeccCChHHHHHHHHHHHHHhc-
Confidence 578888865 334444455555543 57777776532 222221 211 1123332 33455666665432
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-~sav~~~~~~l~ 248 (301)
..++|.++.++.. .+.+.+.|++.|.++.....|... ..+....+..+ ..+|+|++.+ ...+..+++.+.
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 214 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQAR 214 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHH
Confidence 2467888876532 235677888999887554444321 12222223222 4789999888 566777777776
Q ss_pred cccCCCceEEE
Q 022176 249 DTEQWSNSVAC 259 (301)
Q Consensus 249 ~~~~~~~~i~a 259 (301)
+.+. ..+++.
T Consensus 215 ~~g~-~~~~~~ 224 (346)
T 1usg_A 215 SVGL-KTQFMG 224 (346)
T ss_dssp HTTC-CCEEEE
T ss_pred HcCC-CCeEEe
Confidence 6542 455554
No 219
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=60.66 E-value=91 Score=27.64 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=91.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCC
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~ 127 (301)
..++|+++.+. .+...+.|++.|+++...+ ..+.+++. +.+.++|.++..+...+ ..+++ . .+
T Consensus 25 ~~~~vli~~~~--~~~~~~~l~~~~~~v~~~~------~~~~~~~~---~~~~~~d~li~~~~~~~~~~~l~---~--~~ 88 (335)
T 2g76_A 25 NLRKVLISDSL--DPCCRKILQDGGLQVVEKQ------NLSKEELI---AELQDCEGLIVRSATKVTADVIN---A--AE 88 (335)
T ss_dssp -CCEEEECSCC--CHHHHHHHHHHTCEEEECC------SCCHHHHH---HHGGGCSEEEECSSSCBCHHHHH---H--CS
T ss_pred cceEEEEcCCC--CHHHHHHHHhCCCEEEECC------CCCHHHHH---HHhcCceEEEEcCCCCCCHHHHh---h--CC
Confidence 34689998764 3556678888887765432 11223333 34578899886543222 12232 2 23
Q ss_pred CceEEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h-cc--------------------C
Q 022176 128 NVRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-PK--------------------N 174 (301)
Q Consensus 128 ~~~i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l-~~--------------------~ 174 (301)
++|+++ +|-.. .+++++. |+.+.-.|. .+++.+++. + .+ .
T Consensus 89 ~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~ 161 (335)
T 2g76_A 89 KLQVVGRAGTGVDNVDLEAATRK------GILVMNTPN-GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGT 161 (335)
T ss_dssp SCCEEEESSSSCTTBCHHHHHHH------TCEEECCSS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBC
T ss_pred CCcEEEECCCCcchhChHHHHhC------CeEEEECCC-ccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCc
Confidence 555554 33221 3566777 998766664 333332221 1 00 1
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-------HHHHHHcCCCCEEEEEChHH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-------QTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-------~~~~~~~~~~d~I~ftS~sa 239 (301)
...+++|.++.-..-...+++.|+..|.+|. .|++.+..... ..+.+.+.+.|+|++.-|..
T Consensus 162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 230 (335)
T 2g76_A 162 ELNGKTLGILGLGRIGREVATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL 230 (335)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEE---EECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC
T ss_pred CCCcCEEEEEeECHHHHHHHHHHHHCCCEEE---EECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC
Confidence 1367899999887778889999999998764 45432211000 01112245778888886654
No 220
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=60.59 E-value=9.6 Score=31.01 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.5
Q ss_pred hHHHHHHHhCC--CeeEEEeee--eeeeCCCCc-----------------------------HHHHHHcCCCCEEEEEC-
Q 022176 191 NEIEEGLSNRG--FEVVRLNTY--TTEPVHHVD-----------------------------QTVLKQALSIPVVAVAS- 236 (301)
Q Consensus 191 ~~L~~~L~~~G--~~v~~~~vY--~~~~~~~~~-----------------------------~~~~~~~~~~d~I~ftS- 236 (301)
+.+.+.|++.| .+|..+.+| +...+.-.. ..+.+.+...|.|+|.|
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 35677788876 899999998 653211110 11223356789999999
Q ss_pred ------hHHHHHHHHhhh
Q 022176 237 ------PSAVRSWVNLIS 248 (301)
Q Consensus 237 ------~sav~~~~~~l~ 248 (301)
|..++.|++.+.
T Consensus 104 ~y~~~~pa~lK~~iD~~~ 121 (208)
T 2hpv_A 104 MWNLNVPTRLKAWVDTIN 121 (208)
T ss_dssp CBTTBCCHHHHHHHHHHC
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 688999999864
No 221
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=60.56 E-value=13 Score=30.29 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=43.6
Q ss_pred CEEEEEcCCcC----hhHHH----H----HHHhC--CCeeEEEeeeeeeeC-------CCCc---HHHHHHcCCCCEEEE
Q 022176 179 CTVLYPASAKA----SNEIE----E----GLSNR--GFEVVRLNTYTTEPV-------HHVD---QTVLKQALSIPVVAV 234 (301)
Q Consensus 179 ~~vLi~rg~~~----~~~L~----~----~L~~~--G~~v~~~~vY~~~~~-------~~~~---~~~~~~~~~~d~I~f 234 (301)
+||+++.|... ...|. + .|++. |+++..+.+++...+ .... .++.+.+...|.|+|
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 57777766543 22233 3 34444 778888877665321 0111 234445678999999
Q ss_pred ECh-------HHHHHHHHhhhc
Q 022176 235 ASP-------SAVRSWVNLISD 249 (301)
Q Consensus 235 tS~-------sav~~~~~~l~~ 249 (301)
.|| ..+++|++.+..
T Consensus 92 ~sP~Y~~~~~~~lK~~iD~~~~ 113 (191)
T 3k1y_A 92 ATPVFKASYTGLFKMFFDILDT 113 (191)
T ss_dssp EEECBTTBSCHHHHHHHHHSCT
T ss_pred EcCccCCcCcHHHHHHHHHhhh
Confidence 986 588999998864
No 222
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=60.19 E-value=42 Score=29.01 Aligned_cols=146 Identities=10% Similarity=0.063 Sum_probs=79.2
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCcee--ecCCC-CcHHHHHHHhccCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA--FSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~--~~p~~-~~~e~L~~~l~~~~~ 176 (301)
.+.+.||-. +........+.+.+ .+++++..+... ..+... +.... +.|.. ..+..+++.|.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~---~~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (356)
T 3ipc_A 68 DGVKFVVGHANSGVSIPASEVYAE---NGILEITPAATN-PVFTER------GLWNTFRTCGRDDQQGGIAGKYLADHF- 136 (356)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHT---TTCEEEESSCCC-GGGGSS------CCTTEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CCCcEEEcCCCcHHHHHHHHHHHh---CCCeEEecCCCC-cHhhcC------CCCcEEEecCChHHHHHHHHHHHHHhc-
Confidence 688888854 44444455555544 357777655433 222222 22211 23332 22444556555432
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEE-EEChHHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~-ftS~sav~~~~~~l~ 248 (301)
..++|.++.++.. .+.+.+.|++.|.++.....|... ..+....+..+ ..+|+|+ +.+...+..+++.+.
T Consensus 137 g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 214 (356)
T 3ipc_A 137 KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAA 214 (356)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 2467888776432 245778889999887655555322 12222223322 5788888 455666667777776
Q ss_pred cccCCCceEEEE
Q 022176 249 DTEQWSNSVACI 260 (301)
Q Consensus 249 ~~~~~~~~i~aI 260 (301)
+.+. +.+++..
T Consensus 215 ~~g~-~~~~~~~ 225 (356)
T 3ipc_A 215 DQGL-KAKLVSG 225 (356)
T ss_dssp HHTC-CCEEEEC
T ss_pred HCCC-CCcEEEe
Confidence 6542 4566543
No 223
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=60.09 E-value=46 Score=24.05 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=63.4
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---------HHHHHHHHh
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---------SAVRSWVNL 246 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---------sav~~~~~~ 246 (301)
.+||++..+.. +..+.+.|+..|++|... . ...+.++.+ ..+|+|++--. ... .+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~-~~~~~ 73 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITL---S------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL-FWLHE 73 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEE---C------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHH-HHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEe---C------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH-HHHHH
Confidence 57888877765 567888888888755321 1 112222222 46888877421 222 33444
Q ss_pred hhcccCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 247 ISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 247 l~~~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
++.. ..+++++.++. .....+.+.|... ++....+.+.|.+.|...++.+
T Consensus 74 l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 74 IKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASD-FVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp HHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTCC
T ss_pred HHhh-CcCCCEEEEECCCCHHHHHHHHHcCchh-eeeCCCCHHHHHHHHHHHHHhc
Confidence 4332 12556665542 2334455678765 5567778999999998887554
No 224
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=60.08 E-value=26 Score=34.37 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCeEEEeCCCCchHHHH---------HHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh--------H
Q 022176 50 NPKVVVTRERGKNGKLI---------KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------E 112 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~---------~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~--------~ 112 (301)
..+|++.....+.-.+- ..|+..|++|+.+..-... +.+.+...+ .+.|.|.+.+- .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPp-----EeIVeAA~E-edADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPV-----EKLVDAAIE-LKADAILASTIISHDDIHYK 675 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCH-----HHHHHHHHH-TTCSEEEEECCCCGGGHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHH-cCCCEEEEeccccCchhhHH
Confidence 45677754443322222 4689999999988765321 334344423 57888888753 3
Q ss_pred HHHHHHHHHHHcCCC-CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 113 AGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 113 av~~f~~~l~~~~~~-~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.++.+.+.+++.+.. ++++++=|....+.+.+.. |....+ ++...+..+++.|.
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI-----GADa~f-~DATeAVeVA~~Ll 730 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ-----GVDAGF-GRGSKGIHVATFLV 730 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT-----TCSEEE-CTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc-----CCcEEE-CCcchHHHHHHHHH
Confidence 345667778887875 4888888865444443332 887644 34445555555553
No 225
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=59.98 E-value=33 Score=31.14 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
.+++|+++.|......+...+++.|++|..+. +.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~ 56 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD 56 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 46899999998888889999999999887776 53
No 226
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=59.94 E-value=47 Score=29.41 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=88.5
Q ss_pred CeEEEeCCCCchHHHHHHHH-hCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022176 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~-~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~~ 128 (301)
|+|+++..........+.|. ..|+++...+-. .+ ++ ..+.+.++|.|+..+...+ ..+++.+.+. +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~---~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--EN---TVEWAKGFDGINSLQTTPYAAGVFEKMHAY---G 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TT---GGGGGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HH---HHHHhcCCeEEEEcCCCCCCHHHHHhCccc---C
Confidence 46888654333444445554 357776554321 11 11 1234678999887542222 2345555442 2
Q ss_pred ceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----h--cc----------------------C
Q 022176 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--PK----------------------N 174 (301)
Q Consensus 129 ~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----l--~~----------------------~ 174 (301)
+|+++ +|-. -.+++++. |+.+.-.|. ++++.+++. | .+ .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 44433 2322 13566777 988766664 333222211 1 00 0
Q ss_pred CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-----HHHHHHcCCCCEEEEEChHH
Q 022176 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-----QTVLKQALSIPVVAVASPSA 239 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-----~~~~~~~~~~d~I~ftS~sa 239 (301)
...+++|.++.-..-...+.+.|+..|.+|. +|++.+..... ..+.+.+.+.|+|++.-|.+
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI---AYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 1257889999888778899999999998765 44433221100 01111234678888877654
No 227
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=59.48 E-value=16 Score=30.57 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred CeEEEeCCC--CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH---------------
Q 022176 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------------- 113 (301)
Q Consensus 51 ~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--------------- 113 (301)
|+|++.+.. +....+...|++.|+++..+.++.-.+.++ ++.++|.||++-...
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~GGp~~~~~~~~~~~~~~~~ 71 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMGGPQSPSSTKKEFPYYDAQ 71 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECCCSSCTTCCTTTCTTCCHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECCCCCCcccccccCcccchH
Confidence 466666543 355688899999999999888776554432 245799999985321
Q ss_pred -HHHHHHHHHHcCCCCceEEEEchhhHHHHHHHh
Q 022176 114 -GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVI 146 (301)
Q Consensus 114 -v~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~ 146 (301)
...+++.+.+ .+++++.|--+ .+.|-..+
T Consensus 72 ~~~~~i~~~~~---~~~PvLGIClG-~QlL~~~~ 101 (236)
T 3l7n_A 72 AEVKLIQKAAK---SEKIIVGVCLG-AQLMGVAY 101 (236)
T ss_dssp HHHHHHHHHHH---TTCEEEEETHH-HHHHHHHT
T ss_pred HHHHHHHHHHH---cCCCEEEEchH-HHHHHHHh
Confidence 2223333222 36788777555 45555554
No 228
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=59.23 E-value=89 Score=27.12 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred eEEEeCCCC-chHHHHHHHHhCCCcEEEeceeE------eeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHHHHHHHH
Q 022176 52 KVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ------HAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAWKE 123 (301)
Q Consensus 52 ~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~------~~~~~d~~~l~~~l~~l~~~d~I-iftS~~av~~f~~~l~~ 123 (301)
+|+|.-..+ ......+.+.+.|++ ...|+-. +...+-+..+.+......+.|.+ +||.+..+...++.+.+
T Consensus 15 ~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~ 93 (297)
T 2yv2_A 15 RVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVD 93 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHH
Confidence 466644322 345677788888987 3233221 10011123445444221225654 58888888877777776
Q ss_pred cCCCCceEEEEch---------hhHHHHHHHhhcccCCCceeecCCCC---cH-HHHHHHhccCCCCCCEEEEEcCCcC-
Q 022176 124 AGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPASAKA- 189 (301)
Q Consensus 124 ~~~~~~~i~avG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~l~~~~~~~~~vLi~rg~~~- 189 (301)
.+ ++.++++. .-.+.+++. |+.+ +.|... +. ..+.-.+.......++|-++.-.+.
T Consensus 94 ~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l 163 (297)
T 2yv2_A 94 AG---IRLVVVITEGIPVHDTMRFVNYARQK------GATI-IGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTL 163 (297)
T ss_dssp TT---CSEEEECCCCCCHHHHHHHHHHHHHH------TCEE-ECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESCHHH
T ss_pred CC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCCeeEcccccceeecccCCCCCCCEEEEECCHHH
Confidence 54 55333322 223344455 7753 334321 11 0110011211123456765554433
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 237 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~I~ftS~ 237 (301)
...+.+.+.++|.-+..+.-.-.... .....++++.+ .+-++|++..-
T Consensus 164 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 215 (297)
T 2yv2_A 164 TYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGE 215 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEC
T ss_pred HHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 45677888888888777776666543 22233444433 34556776643
No 229
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.00 E-value=69 Score=28.28 Aligned_cols=175 Identities=11% Similarity=-0.004 Sum_probs=89.0
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh-----------------hHHHHHHHhhcccCCCc----eeecC
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-----------------TASIFEEVIQSSKCSLD----VAFSP 159 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~-----------------Ta~~L~~~~~~~~~G~~----~~~~p 159 (301)
...|.|++.|....+.....+. ....++.+|... ....+++.+ |+. ..++.
T Consensus 187 ~~ad~ii~~S~~~~~~~~~~~~---~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~G 258 (439)
T 3fro_A 187 YIADIVTTVSRGYLIDEWGFFR---NFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKF-----GMDEGVTFMFIG 258 (439)
T ss_dssp HHCSEEEESCHHHHHHTHHHHG---GGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHH-----TCCSCEEEEEEC
T ss_pred hhccEEEecCHHHHHHHhhhhh---hcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHc-----CCCCCcEEEEEc
Confidence 4579999999988776443221 122334443321 234444433 432 22222
Q ss_pred C----CCcHHHHHHHhccCCC----CCCEEEEEcCCcCh--hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCC
Q 022176 160 S----KATGKILASELPKNGK----KKCTVLYPASAKAS--NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI 229 (301)
Q Consensus 160 ~----~~~~e~L~~~l~~~~~----~~~~vLi~rg~~~~--~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~ 229 (301)
. .-+.+.|++.+..... .+-++++++..... +.+.+..++.| ++..+.=| ...+++...+...
T Consensus 259 ~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~------~~~~~~~~~~~~a 331 (439)
T 3fro_A 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEM------LSREFVRELYGSV 331 (439)
T ss_dssp CSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSC------CCHHHHHHHHTTC
T ss_pred ccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCC------CCHHHHHHHHHHC
Confidence 1 2245666666654322 23456666554434 56666666776 33222110 1123344446789
Q ss_pred CEEEEEChHHH--HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 230 PVVAVASPSAV--RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 230 d~I~ftS~sav--~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
|+++++|...- -.+++.+. .++++++........+-+.| .-.+ .+..+.+++.++|.+.+.
T Consensus 332 dv~v~ps~~e~~~~~~~EAma----~G~Pvi~s~~~~~~e~~~~~-~g~~-~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 332 DFVIIPSYFEPFGLVALEAMC----LGAIPIASAVGGLRDIITNE-TGIL-VKAGDPGELANAILKALE 394 (439)
T ss_dssp SEEEECBSCCSSCHHHHHHHH----TTCEEEEESSTHHHHHCCTT-TCEE-ECTTCHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCccHHHHHHHH----CCCCeEEcCCCCcceeEEcC-ceEE-eCCCCHHHHHHHHHHHHh
Confidence 99999985210 01222221 25677665332222222234 3323 344689999999999887
No 230
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=58.98 E-value=46 Score=27.43 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=35.3
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
-.+++++. |+.+.+.....+.+. +++.+..... .-+++...........+.|.+.|+.+..+
T Consensus 24 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~~~~~~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 24 LEQGARAR------GYQLLIASSDDQPDSERQLQQLFRARRC--DALFVASCLPPEDDSYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTTC--SEEEECCCCCSSCCHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHHHcCC--CEEEEecCccccHHHHHHHHHcCCCEEEE
Confidence 45677777 988877655544443 3344443321 23444443323355667888889876544
No 231
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=58.82 E-value=94 Score=27.26 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCC--Cc-----HHHHHHcCCCCEEEEEChH
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VD-----QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~-----~~~~~~~~~~d~I~ftS~s 238 (301)
.+++|.++.-..-...+++.|+..|.+|. .|.+.+... .. ..+.+.+.+.|+|++.-|.
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Pl 203 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPLR---CWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPN 203 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEE---EEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCC
Confidence 57889999988888899999999998764 454433211 10 1222224678999888653
No 232
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=58.73 E-value=93 Score=27.17 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=44.2
Q ss_pred cCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH------HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 226 ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE------TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~------~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+...|+++..|... .+.+.+. .+++++++-. ..++.+.+.|.-..+-.+..+.+.|.+++.+.+.++
T Consensus 295 l~~ad~~v~~~G~~--t~~Ea~~----~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~ 367 (402)
T 3ia7_A 295 LAHARACLTHGTTG--AVLEAFA----AGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADS 367 (402)
T ss_dssp HTTEEEEEECCCHH--HHHHHHH----TTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCH
T ss_pred HhhCCEEEECCCHH--HHHHHHH----hCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCH
Confidence 45678877777632 2333332 2567776644 577888888886544344568999999998887643
No 233
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=58.53 E-value=79 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.+.|++||||-... =+..+++.|.+.|++|+.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 36789999997764 3568899999999987754
No 234
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=58.22 E-value=99 Score=27.32 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=39.7
Q ss_pred CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEE---C--HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 227 LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---G--ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aI---G--~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
...|+++..+... .+.+.+. .+++++++ + +..++.+.+.|.-..+-.++.+.+.|.++|.+.+.+
T Consensus 312 ~~ad~~v~~~G~~--t~~Ea~~----~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 381 (415)
T 3rsc_A 312 EQATVCVTHGGMG--TLMEALY----WGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAAD 381 (415)
T ss_dssp HHEEEEEESCCHH--HHHHHHH----TTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTC
T ss_pred hhCCEEEECCcHH--HHHHHHH----hCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcC
Confidence 3467766666531 2233332 15666665 2 235777888888654444456889999999887754
No 235
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=58.10 E-value=14 Score=28.15 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--------HHHHHHHHHHc--CCCCceEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 132 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--------v~~f~~~l~~~--~~~~~~i~ 132 (301)
+.+++.|.+.|+++..+.. .+ ..++..+|.|+|-+|.= +..|++.+... .+.+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 4555666677888765432 11 12467899999888754 46788877654 34567777
Q ss_pred EEch
Q 022176 133 VVGA 136 (301)
Q Consensus 133 avG~ 136 (301)
+.|-
T Consensus 87 vfg~ 90 (147)
T 2hna_A 87 AIGI 90 (147)
T ss_dssp EESC
T ss_pred EEec
Confidence 7763
No 236
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=57.60 E-value=40 Score=27.53 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-... =+..+++.|.+.|++|..+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 357789999998764 4578999999999987653
No 237
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=57.50 E-value=1.2e+02 Score=28.08 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=30.3
Q ss_pred cCCCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEe
Q 022176 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~ 79 (301)
.++||.|.||..+-.- .+...|.+.|.+.|++|.+.
T Consensus 48 ~~~pl~G~ri~~~lH~~~~Ta~l~~tL~~~GA~v~~~ 84 (435)
T 3gvp_A 48 GEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWA 84 (435)
T ss_dssp TTCTTTTCEEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEEEccHHHHHHHHHHHHHCCCEEEEE
Confidence 5699999999987654 47789999999999999864
No 238
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=57.39 E-value=21 Score=29.19 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=64.8
Q ss_pred CCEEEEEcCCc-----ChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-----HHHHHHHH
Q 022176 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-----SAVRSWVN 245 (301)
Q Consensus 178 ~~~vLi~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-----sav~~~~~ 245 (301)
.++|++....+ +...+...|+.+|++|..+-. .+ ..+++.+.. .++|+|.+++. ..++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~--~v----p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV--DI----EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS--SB----CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC--CC----CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 45787766553 356788899999998765553 12 223333322 48899998874 33566666
Q ss_pred hhhcccC-CCceEEEECHHHHHH-HHHcCCCeeEecCCCCHHHHHHHHHHH
Q 022176 246 LISDTEQ-WSNSVACIGETTASA-AKRLGLKNVYYPTHPGLEGWVDSILEA 294 (301)
Q Consensus 246 ~l~~~~~-~~~~i~aIG~~Ta~a-l~~~G~~~~~v~~~ps~e~ll~ai~~~ 294 (301)
.+++.+. .++++++-|+...+. +++.|... ++ .+....++.+++.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~~gad~--~~--~da~~av~~~~~l 208 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADEIGADG--YA--PDAASATELCRQL 208 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHHHTCSE--EC--SSHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHHcCCeE--EE--CCHHHHHHHHHHH
Confidence 6655432 258888888755443 45567543 33 3566666666554
No 239
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=57.18 E-value=6 Score=33.34 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=21.3
Q ss_pred CCeEEEe----CCCCchHH----HHHHHHhCCCcEEEeceeEe
Q 022176 50 NPKVVVT----RERGKNGK----LIKALAKHRIDCLELPLIQH 84 (301)
Q Consensus 50 g~~Ilit----R~~~~~~~----l~~~L~~~G~~v~~~P~~~~ 84 (301)
+|+||+. |+...+.. +.+.+++.|.++..+-+++.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 4677764 33332333 45566677999888877653
No 240
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=57.07 E-value=89 Score=26.44 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=10.2
Q ss_pred CCCCEEEEEChHHHHHH
Q 022176 227 LSIPVVAVASPSAVRSW 243 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~ 243 (301)
.++|.|++.+..+...+
T Consensus 68 ~~vDgII~~~~~~~~~~ 84 (302)
T 2qh8_A 68 ENPDVLVGIATPTAQAL 84 (302)
T ss_dssp TCCSEEEEESHHHHHHH
T ss_pred CCCCEEEECChHHHHHH
Confidence 46777777765544433
No 241
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=56.64 E-value=7.6 Score=31.77 Aligned_cols=87 Identities=9% Similarity=0.172 Sum_probs=50.1
Q ss_pred CCCeEEEe----CCCCchHHHHHHHHh--------C--CCcEEEeceeEeeeC--------CCchHHHHHHhcCCCccEE
Q 022176 49 SNPKVVVT----RERGKNGKLIKALAK--------H--RIDCLELPLIQHAQG--------PDTDRLSSVLNADTIFDWI 106 (301)
Q Consensus 49 ~g~~Ilit----R~~~~~~~l~~~L~~--------~--G~~v~~~P~~~~~~~--------~d~~~l~~~l~~l~~~d~I 106 (301)
.+++|++. |+...+..+++.+.+ . |+++..+.+.+.... ...+.+....+.+...|.|
T Consensus 10 ~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~i 89 (191)
T 3k1y_A 10 HMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGL 89 (191)
T ss_dssp CSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEE
T ss_pred hhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEE
Confidence 35667764 544555666655443 3 777777666544310 0124455566667889999
Q ss_pred EEeChH-------HHHHHHHHHHHcCCCCceEEEEc
Q 022176 107 IITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 107 iftS~~-------av~~f~~~l~~~~~~~~~i~avG 135 (301)
||.||. ..+.|++.+....+.+.+++.++
T Consensus 90 vi~sP~Y~~~~~~~lK~~iD~~~~~~l~gK~~~~v~ 125 (191)
T 3k1y_A 90 VVATPVFKASYTGLFKMFFDILDTDALTGMPTIIAA 125 (191)
T ss_dssp EEEEECBTTBSCHHHHHHHHHSCTTTTTTCEEEEEE
T ss_pred EEEcCccCCcCcHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 999975 45666665433234455555543
No 242
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=56.40 E-value=31 Score=30.17 Aligned_cols=145 Identities=8% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCccEEEE-eChHHHHHHHH--HHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCC
Q 022176 101 TIFDWIII-TSPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~Iif-tS~~av~~f~~--~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~ 176 (301)
++.+.||- .+........+ .+.+. +++++..+... ..+.+. ..-..+.|.. ..+..+++.|...
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~f~~~~~~~~~~~~~~~~l~~~-- 139 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGA-SSMTTD------PLVFPIKASYQQEIDKMITALVTI-- 139 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCC-GGGGSC------TTEECCSCCHHHHHHHHHHHHHHT--
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCc-HhhccC------CcEEEeCCChHHHHHHHHHHHHHc--
Confidence 47788875 34444555566 66553 45666555432 112111 2111122322 2245566666643
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-~sav~~~~~~l~ 248 (301)
..++|.++.++.. ...+.+.|++.|.++.....|... ..+....+..+ ..+|+|++.+ ...+..+++.+.
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 217 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYR 217 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHH
Confidence 3467877765432 346778899999987655555332 12222223322 5789888844 666777888777
Q ss_pred cccCCCceEEEE
Q 022176 249 DTEQWSNSVACI 260 (301)
Q Consensus 249 ~~~~~~~~i~aI 260 (301)
+.+ .+.+++..
T Consensus 218 ~~g-~~~~~i~~ 228 (364)
T 3lop_A 218 ARG-GEAQLLGL 228 (364)
T ss_dssp HTT-CCCEEEEC
T ss_pred HcC-CCCeEEEe
Confidence 654 35566654
No 243
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=56.28 E-value=22 Score=29.39 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
..+++|+|..-...-....+.|++.|+++..++. + + .+..+|.||++-..
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~------~--~-------~l~~~Dglil~GG~ 70 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK------S--E-------QLEGLDGLVLPGGE 70 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS------G--G-------GGTTCSEEEECCCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC------H--H-------HHhhCCEEEECCCC
Confidence 4467899986544335567899999998887663 1 1 24579999998764
No 244
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=56.16 E-value=1.3e+02 Score=27.93 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=30.0
Q ss_pred cCCCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEe
Q 022176 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~ 79 (301)
.++||.|.||..+-.- .+...|.+.|.+.|++|...
T Consensus 37 ~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~ 73 (436)
T 3h9u_A 37 PSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRWA 73 (436)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEEe
Confidence 5699999999987664 47788999999999999763
No 245
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=55.95 E-value=37 Score=29.49 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCCeEEEe----CCCCchHH----HHHHHHhCCCcEEEeceeEeeeCCC------chHHHHHHhcCCCccEEEEeCh---
Q 022176 49 SNPKVVVT----RERGKNGK----LIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSP--- 111 (301)
Q Consensus 49 ~g~~Ilit----R~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~d------~~~l~~~l~~l~~~d~IiftS~--- 111 (301)
..++|++. |+...+.. +++.+++.|+++..+-+.+. +.++ .+.+....+.+...|.|||.||
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dl-pl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL-PLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTC-CCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcC-CCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc
Confidence 45777775 33333434 44456667999888776654 2211 1234555556778999999996
Q ss_pred ----HHHHHHHHHHH
Q 022176 112 ----EAGSVFLEAWK 122 (301)
Q Consensus 112 ----~av~~f~~~l~ 122 (301)
-..+.|++.+.
T Consensus 136 ~sipg~LKn~IDrl~ 150 (279)
T 2fzv_A 136 GQITSVMKAQIDHLP 150 (279)
T ss_dssp TEECHHHHHHHHHSC
T ss_pred cCcCHHHHHHHHHHh
Confidence 46677777653
No 246
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=55.94 E-value=61 Score=24.23 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=64.0
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--C--CCCEEEEECh---HHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L--SIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~--~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
.+||++-.+.. +..|.+.|++.|+++. ..+.. ..+.++.+ . .+|+|++--. ...-.+++.++..
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~--~~~~~------~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 108 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNII--DTAAD------GEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEF 108 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE--EEESS------HHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEE--EEECC------HHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhh
Confidence 58999988765 5678889999987652 12111 12222222 2 6788887421 1122233333332
Q ss_pred cCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 251 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 251 ~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
. ..++++.+. ......+.+.|... ++....+.+.|.+.|...++
T Consensus 109 ~-~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 109 D-KNARVIMISALGKEQLVKDCLIKGAKT-FIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp C-TTCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTTC
T ss_pred C-CCCcEEEEeccCcHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHhc
Confidence 2 245565554 44555667789765 56777799999999987653
No 247
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=55.87 E-value=8.3 Score=33.71 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCcC--------hhHHHHHHHhCCCeeEEEeeeeeeeCCCC-----------------------------c
Q 022176 177 KKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------------------------D 219 (301)
Q Consensus 177 ~~~~vLi~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------------------------~ 219 (301)
+..|||++-+--. .+.+.+.|++.|.+|+.+.+|+....+.. .
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQS 100 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSC
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCc
Confidence 4578887765422 34577889999999999999986432110 0
Q ss_pred H---HHHHHcCCCCEEEEEC-------hHHHHHHHHhh
Q 022176 220 Q---TVLKQALSIPVVAVAS-------PSAVRSWVNLI 247 (301)
Q Consensus 220 ~---~~~~~~~~~d~I~ftS-------~sav~~~~~~l 247 (301)
. ...+.+...|.|||.+ |..++.|++.+
T Consensus 101 ~dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv 138 (280)
T 4gi5_A 101 ADIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRV 138 (280)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHh
Confidence 1 1122245678888876 68999999976
No 248
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=55.86 E-value=45 Score=26.43 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=44.1
Q ss_pred CCeEEEeCCC--CchH----HHHHHHHhCCCcEEEeceeEeeeCCCch-------HHH--HHHhcCCCccEEEEeChH--
Q 022176 50 NPKVVVTRER--GKNG----KLIKALAKHRIDCLELPLIQHAQGPDTD-------RLS--SVLNADTIFDWIIITSPE-- 112 (301)
Q Consensus 50 g~~IlitR~~--~~~~----~l~~~L~~~G~~v~~~P~~~~~~~~d~~-------~l~--~~l~~l~~~d~IiftS~~-- 112 (301)
+++|+|.-.+ +... .+++.+++.|+++..+.+.+. ..+... ... ....++..+|.|||-||.
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~ 83 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF 83 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEECBT
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc
Confidence 4566664333 2233 345556677988887777664 222110 000 002235689999999974
Q ss_pred -----HHHHHHHHHHHc----CCCCceEEEE
Q 022176 113 -----AGSVFLEAWKEA----GTPNVRIGVV 134 (301)
Q Consensus 113 -----av~~f~~~l~~~----~~~~~~i~av 134 (301)
.++.|++.+... .+.+.+++++
T Consensus 84 ~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~ 114 (200)
T 2a5l_A 84 GNMASPLKYFLDGTSSLWLTGSLVGKPAAVF 114 (200)
T ss_dssp TBCCHHHHHHHHTCHHHHHHTTTTTCEEEEE
T ss_pred cCccHHHHHHHHHHHHHhhccccCCCEEEEE
Confidence 566677654331 2345555543
No 249
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=55.77 E-value=90 Score=26.08 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=32.0
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+.+.+.....+.+. +++.+..... .-+++..... .....+.|.+.|+.|..+.
T Consensus 38 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~-~~~~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 38 IEDIATMY------KYNIILSNSDQNMEKELHLLNTMLGKQV--DGIVFMGGNI-TDEHVAEFKRSPVPIVLAA 102 (289)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTTC--SEEEECCSCC-CHHHHHHHHHSSSCEEEES
T ss_pred HHHHHHHc------CCEEEEEeCCCCHHHHHHHHHHHHhCCC--CEEEEecCCC-CHHHHHHHHhcCCCEEEEc
Confidence 45566777 887765544434332 3344443321 2344433332 3445567778888765443
No 250
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=55.70 E-value=23 Score=31.78 Aligned_cols=79 Identities=15% Similarity=0.053 Sum_probs=45.7
Q ss_pred CCeEEEe-CCCCch-----HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHH
Q 022176 50 NPKVVVT-RERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (301)
Q Consensus 50 g~~Ilit-R~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-------av~~ 116 (301)
+++|+|. .+...+ +.+++.+++.|+++..+.+ .. .+.. .....+..+|.|||.||. .++.
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~-~~~~---~~~~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KA-CHHS---QIMSEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TT-SCHH---HHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CC-CCHH---HHHHHHHHCCEEEEECCccCCCchHHHHH
Confidence 4566654 333332 3345566667766543332 21 1222 223345789999999963 5778
Q ss_pred HHHHHHHcCCCCceEEEEc
Q 022176 117 FLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 117 f~~~l~~~~~~~~~i~avG 135 (301)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8887766555667777666
No 251
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=55.65 E-value=24 Score=31.76 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (301)
.+++|+++.+......+.+.+++.|++|..+..+
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~ 46 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPT 46 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999999888888999999999988766554
No 252
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=55.65 E-value=1.1e+02 Score=27.16 Aligned_cols=35 Identities=6% Similarity=-0.115 Sum_probs=29.8
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEec
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P 80 (301)
..+.|++|+|.-...-+..++..+++.|++++.+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d 44 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLD 44 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 45789999999877677899999999999998764
No 253
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=55.51 E-value=1.4e+02 Score=28.06 Aligned_cols=215 Identities=11% Similarity=0.080 Sum_probs=114.6
Q ss_pred CCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEch-
Q 022176 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA- 136 (301)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~-~~~~~~~i~avG~- 136 (301)
..+..++...|++.|+++..+.. .....++ +.++...+.-+..++.......+.+++ .+.+-+.+--+|.
T Consensus 232 ~gD~~eik~lL~~~Gi~v~~~~~----g~~t~~e----i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~ 303 (492)
T 3u7q_A 232 GGDAWSSRILLEEMGLRCVAQWS----GDGSISE----IELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPT 303 (492)
T ss_dssp TTTTHHHHHHHHHTTCEEEEEEE----TTCCHHH----HHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHH
T ss_pred hhhHHHHHHHHHHCCCeEEEEeC----CCCCHHH----HHhhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHH
Confidence 34568999999999999986531 1112233 335667777777887666666777754 3433211112553
Q ss_pred hhHHHHHHHhhcccCCCceeecCCC---Cc---HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSK---AT---GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~---~~---~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
.|.+.|++.. ...|.. .|+. .- -..+...+... ...|+|+++..+....-.+...|.+.|.+|..+-
T Consensus 304 ~T~~~L~~ia--~~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~~g 378 (492)
T 3u7q_A 304 KTIESLRAIA--AKFDES---IQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGTG 378 (492)
T ss_dssp HHHHHHHHHH--TTSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHH--HHhCCc---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHCCCEEEEEe
Confidence 4677777762 111211 1110 00 01122222211 1268899987776656678899999999886644
Q ss_pred eeeeeeCCCCcHHHHHHcCCCCEEEEE--ChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEec----CC-
Q 022176 209 TYTTEPVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP----TH- 281 (301)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~I~ft--S~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~----~~- 281 (301)
++... ..+.+.+.+ ....+.+++. +...++.++...+ ..++.-|......+++.|+.-..+. ..
T Consensus 379 t~~~~--~~d~~~l~~-~~~~~~~i~~~~d~~el~~~i~~~~------pDL~ig~~~~~~ia~k~gIP~~~~~~~d~~~p 449 (492)
T 3u7q_A 379 YEFAH--NDDYDRTMK-EMGDSTLLYDDVTGYEFEEFVKRIK------PDLIGSGIKEKFIFQKMGIPFREMHSWDYSGP 449 (492)
T ss_dssp ESSCC--HHHHHHHHT-TSCTTCEEEESCBHHHHHHHHHHHC------CSEEEECHHHHHHHHHTTCCEEESSSGGGCCC
T ss_pred CCCCC--HHHHHHHHH-hCCCCcEEEcCCCHHHHHHHHHhcC------CcEEEeCcchhHHHHHcCCCEEeccccccCCC
Confidence 43211 111111211 1233456665 4566665555432 3355556666777788887643211 12
Q ss_pred -CCHHHHHHHHHHHH
Q 022176 282 -PGLEGWVDSILEAL 295 (301)
Q Consensus 282 -ps~e~ll~ai~~~~ 295 (301)
...++.++.+.+..
T Consensus 450 ~~GY~Ga~~l~~~i~ 464 (492)
T 3u7q_A 450 YHGFDGFAIFARDMD 464 (492)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred cEehhhHHHHHHHHH
Confidence 23566666555544
No 254
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=55.32 E-value=14 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=21.6
Q ss_pred HHHHHcCCCCEEEEECh-------HHHHHHHHhhh
Q 022176 221 TVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (301)
Q Consensus 221 ~~~~~~~~~d~I~ftS~-------sav~~~~~~l~ 248 (301)
...+.+...|.|+|.|| ..++.|++.+.
T Consensus 64 ~~~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 64 SIIERILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHHHHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 34445678999999994 78899998763
No 255
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=55.31 E-value=77 Score=27.59 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=75.6
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
.+.+.||-. +..........+.+. +++++..+..+ ..+... ........+.+.. ..+..+++.+.+. ..
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~l~~~--g~ 140 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAGA-DTLTNE---QCTPYTVHYAYDTMALAKGTGSAVVKQ--GG 140 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCCC-GGGGTT---TCCTTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCCc-hhhhcc---cCCCcEEEeeCChHHHHHHHHHHHHHc--CC
Confidence 578888754 444445555656553 57777765433 222221 0001111123322 2245566666654 34
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-~sav~~~~~~l~~~ 250 (301)
++|.++..+.. .+.+.+.|++.|.++.....|.... .+. ...+..+ .++|+|++.+ ...+..+++.+.+.
T Consensus 141 ~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~-~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 218 (375)
T 3i09_A 141 KTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSA-SDF-SSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEF 218 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SCC-HHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC-ccH-HHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHc
Confidence 78887765543 3567888999999876555554322 122 2223222 5789886655 44666777777665
Q ss_pred c
Q 022176 251 E 251 (301)
Q Consensus 251 ~ 251 (301)
+
T Consensus 219 g 219 (375)
T 3i09_A 219 G 219 (375)
T ss_dssp T
T ss_pred C
Confidence 4
No 256
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=55.20 E-value=41 Score=29.53 Aligned_cols=138 Identities=13% Similarity=0.029 Sum_probs=76.8
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCce--eecCCC-CcHHHHHHHhccCCC
Q 022176 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~Iif-tS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~l~~~~~ 176 (301)
.+.+.||= .+..........+.+. +++++..+..+. .+... . ..+. .+.+.. ..+..+++.+.+.
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~-~~~~~---~--~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAAD-QIGGT---E--CNGYGIGFLYNFTSIVKTVVQAQLAK-- 140 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCCT-TTTTT---T--CCSSEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCch-hhhcc---c--CCCcEEEEeCChHHHHHHHHHHHHHc--
Confidence 57888873 4455555556666553 567777655432 22221 0 1111 122322 1245566666654
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-sav~~~~~~l~ 248 (301)
..++|.++..+.. .+.+.+.|++.|.++.....|.... .+. ...+..+ .++|+|++.+. ..+..+++.+.
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~-~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 218 (379)
T 3n0w_A 141 GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET-QDF-SSYLLQAKASGAQLIVSTSGGAANINIMKQAR 218 (379)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC-CCC-HHHHHHHHHHTCSEEEECCCHHHHHHHHHHHH
T ss_pred CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CCH-HHHHHHHHHCCCCEEEEecccchHHHHHHHHH
Confidence 3478888765543 3567788889998876655554322 122 2222222 47898877655 66667777776
Q ss_pred ccc
Q 022176 249 DTE 251 (301)
Q Consensus 249 ~~~ 251 (301)
+.+
T Consensus 219 ~~g 221 (379)
T 3n0w_A 219 EFG 221 (379)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 257
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=54.92 E-value=7.4 Score=30.85 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=35.1
Q ss_pred CeEEEeCCC----CchHHHHHHHHhCCCcEEEeceeEeeeCC-------------CchHHHHHHhcCCCccEEEEeChH-
Q 022176 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSPE- 112 (301)
Q Consensus 51 ~~IlitR~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-------------d~~~l~~~l~~l~~~d~IiftS~~- 112 (301)
|+||+.-.. +....+++.+.+ |+++..+.+.+....+ ..+.+.....++..+|.|||.||.
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y 82 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIY 82 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECB
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCcc
Confidence 456654322 456777777764 6665554444332100 011233344456789999999863
Q ss_pred ------HHHHHHHHH
Q 022176 113 ------AGSVFLEAW 121 (301)
Q Consensus 113 ------av~~f~~~l 121 (301)
.++.|++.+
T Consensus 83 ~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 83 WFGMSGTLKLFIDRW 97 (184)
T ss_dssp TTBCCHHHHHHHHTH
T ss_pred ccCCcHHHHHHHHHh
Confidence 445555543
No 258
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=54.71 E-value=1.1e+02 Score=26.66 Aligned_cols=137 Identities=19% Similarity=0.250 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~~~~~ 128 (301)
+++|+++.+.. ....+.|++.|+++...+ ..+.+++ .+.+.++|.|+..+...+ ..+++ . .++
T Consensus 3 ~~~il~~~~~~--~~~~~~l~~~~~~~~~~~------~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~l~---~--~~~ 66 (307)
T 1wwk_A 3 RMKVLVAAPLH--EKAIQVLKDAGLEVIYEE------YPDEDRL---VELVKDVEAIIVRSKPKVTRRVIE---S--APK 66 (307)
T ss_dssp -CEEEECSCCC--HHHHHHHHHTTCEEEECS------SCCHHHH---HHHSTTCSEEEESSCSCBCHHHHT---T--CTT
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCeEEEeCC------CCCHHHH---HHHhcCCEEEEEcCCCCCCHHHHh---h--CCC
Confidence 36899987543 445677888777664311 1122333 335688999886543212 11222 1 245
Q ss_pred ceEEE---Echh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHHH-----h--cc-------------C--------C
Q 022176 129 VRIGV---VGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--PK-------------N--------G 175 (301)
Q Consensus 129 ~~i~a---vG~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----l--~~-------------~--------~ 175 (301)
+|+++ +|-. -.+++++. |+.+.-.|. .+++.+++. | .+ | .
T Consensus 67 Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 139 (307)
T 1wwk_A 67 LKVIARAGVGLDNIDVEAAKEK------GIEVVNAPA-ASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 139 (307)
T ss_dssp CCEEEESSSCCTTBCHHHHHHH------TCEEECCGG-GGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCC
T ss_pred CeEEEECCccccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcc
Confidence 66554 2221 23567778 988765554 333332221 1 00 1 1
Q ss_pred CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
..+++|.++.-..-...+.+.|+..|.+|. +|++
T Consensus 140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~ 173 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGYQVAKIANALGMNIL---LYDP 173 (307)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECS
T ss_pred cCCceEEEEccCHHHHHHHHHHHHCCCEEE---EECC
Confidence 367889999888878899999999998664 5554
No 259
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=54.58 E-value=55 Score=23.28 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=62.7
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--C-CCCEEEEEC-----hHHHHHHHHhhh
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVAS-----PSAVRSWVNLIS 248 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~-~~d~I~ftS-----~sav~~~~~~l~ 248 (301)
..+||++-.+.. +..+...|...|++|.. +. ...+.++.+ . .+|+|++-- .... .+++.++
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~-~~~~~l~ 74 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTA---VS------SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGW-QVARVAR 74 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCCCEEEEESCCSSSSCHH-HHHHHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEE---EC------CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHH-HHHHHHH
Confidence 468888887764 56788889888875532 11 112222222 3 689887642 2233 3444444
Q ss_pred cccCCCceEEEECHHHHHHHHHcCCCe-eEecCCCCHHHHHHHHHHHHHccCC
Q 022176 249 DTEQWSNSVACIGETTASAAKRLGLKN-VYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 249 ~~~~~~~~i~aIG~~Ta~al~~~G~~~-~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
... .+++++.++..........++.. .++....+.+.|.+.|.+.+..+.+
T Consensus 75 ~~~-~~~~ii~~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 75 EID-PNMPIVYISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp HHC-TTCCEEEEESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred hcC-CCCCEEEEeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 322 25666665432211112222221 4667778999999999988866543
No 260
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=54.38 E-value=63 Score=23.92 Aligned_cols=112 Identities=11% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~ 120 (301)
....+++|||.-... ....+...|++.|+++..+ .+..+....+.. ..+|.|++-- .++.+ +++.
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~-~~~~ 79 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPT-LLAR 79 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHH
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHH-HHHH
Confidence 345577899987654 4457778888888655421 233333344433 5789888742 34544 4555
Q ss_pred HHHcCCCCceEEEEchh-hHHHHHHHhhcccCC-CceeecCCCCcHHHHHHHhc
Q 022176 121 WKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCS-LDVAFSPSKATGKILASELP 172 (301)
Q Consensus 121 l~~~~~~~~~i~avG~~-Ta~~L~~~~~~~~~G-~~~~~~p~~~~~e~L~~~l~ 172 (301)
+.+.. ++++++++... ......+.+.. | .. +++..+.+.+.|...+.
T Consensus 80 l~~~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~l~~~i~ 128 (153)
T 3hv2_A 80 IHQQY-PSTTRILLTGDPDLKLIAKAINE---GEIY-RYLSKPWDDQELLLALR 128 (153)
T ss_dssp HHHHC-TTSEEEEECCCCCHHHHHHHHHT---TCCS-EEECSSCCHHHHHHHHH
T ss_pred HHhHC-CCCeEEEEECCCCHHHHHHHHhC---CCcc-eEEeCCCCHHHHHHHHH
Confidence 65533 46777666543 33333332211 4 43 46667778888877664
No 261
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=54.34 E-value=67 Score=27.75 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=37.7
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEecee------Eeee--CCCchHHHHHHhcCCCccEEEEeC
Q 022176 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQ--GPDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~~--~~d~~~l~~~l~~l~~~d~IiftS 110 (301)
.+..+.+|+||||-..+ -+..+++.|.+.|++|..+-.- +... ..|.+.+.+.+ .+.|.||.+.
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~A 85 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI---MGVSAVLHLG 85 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH---TTCSEEEECC
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH---hCCCEEEECC
Confidence 44678899999998754 5578999999999998875321 1111 22344555555 4789998654
No 262
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=54.23 E-value=67 Score=28.76 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=89.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--H-HHHHHHHHHcCCCCceEEE---Ech
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV---VGA 136 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--v-~~f~~~l~~~~~~~~~i~a---vG~ 136 (301)
..+.+.|++.|+++...+--.. +.+.+. +.+.++|.|+.++... + +.+++ . .+++|+++ +|-
T Consensus 30 l~~~~~L~~~g~ev~~~~~~~~----~~~~~~---~~~~~ad~li~~~~~~~~~~~~~l~---~--~p~Lk~i~~~g~G~ 97 (351)
T 3jtm_A 30 LGIRDWLESQGHQYIVTDDKEG----PDCELE---KHIPDLHVLISTPFHPAYVTAERIK---K--AKNLKLLLTAGIGS 97 (351)
T ss_dssp GGCHHHHHHTTCEEEEESCCSS----TTSHHH---HHTTTCSEEEECTTSCCCBCHHHHH---H--CSSCCEEEESSSCC
T ss_pred HHHHHHHHHCCCEEEEeCCCCC----CHHHHH---HHhCCCEEEEEccCCCCCCCHHHHh---h--CCCCeEEEEeCeee
Confidence 3578899999999886543221 122333 3468899988654211 1 11222 2 24566655 343
Q ss_pred hh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------hcc-----------------------CCCCCCEEEEE
Q 022176 137 GT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK-----------------------NGKKKCTVLYP 184 (301)
Q Consensus 137 ~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l~~-----------------------~~~~~~~vLi~ 184 (301)
.. .+++.+. |+.+.-.|.. +++.+++. +.+ ....|++|.++
T Consensus 98 d~id~~~a~~~------gI~V~n~~g~-~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGII 170 (351)
T 3jtm_A 98 DHIDLQAAAAA------GLTVAEVTGS-NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTV 170 (351)
T ss_dssp TTBCHHHHHHT------TCEEEECTTT-THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEE
T ss_pred cccCHHHHHhc------CeeEEECCCc-CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEE
Confidence 22 3567777 9988766653 33332221 110 11367899999
Q ss_pred cCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCc---------HHHHHHcCCCCEEEEEChH
Q 022176 185 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD---------QTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 185 rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~I~ftS~s 238 (301)
.-......+...|+..|.+| ..|++.+..... ..+.+.+.+.|+|++.-|.
T Consensus 171 G~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl 230 (351)
T 3jtm_A 171 GAGRIGKLLLQRLKPFGCNL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL 230 (351)
T ss_dssp CCSHHHHHHHHHHGGGCCEE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred EeCHHHHHHHHHHHHCCCEE---EEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence 98888889999999999875 455543211100 0112224578999988774
No 263
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=54.09 E-value=33 Score=29.72 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=67.1
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCC-Cc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-DT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-d~-~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~ 123 (301)
....|++|.+.--- .+.+.+.+.+.++..+ +..|.+ +. +..... -+...|+|++|...=+..-++.+-+
T Consensus 137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~--~lp~~D~viiTgstlvN~Tl~~lL~ 207 (270)
T 3l5o_A 137 NEVKGKKVGVVGHF----PHLESLLEPICDLSIL---EWSPEEGDYPLPASEF--ILPECDYVYITCASVVDKTLPRLLE 207 (270)
T ss_dssp TTTTTSEEEEESCC----TTHHHHHTTTSEEEEE---ESSCCTTCEEGGGHHH--HGGGCSEEEEETHHHHHTCHHHHHH
T ss_pred cccCCCEEEEECCc----hhHHHHHhcCCCEEEE---ECCCCCCCCChhHHHH--hhccCCEEEEEeehhhcCCHHHHHh
Confidence 34568999987533 3445666777665543 334443 21 222222 2578999999999988766666655
Q ss_pred cCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 124 ~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
...+...++.+||.| ..+-+.|. .|++..-.-.--+.+.+.+.+..
T Consensus 208 ~~~~a~~vvl~GPSt-p~~P~lf~---~Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 208 LSRNARRITLVGPGT-PLAPVLFE---HGLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp HTTTSSEEEEESTTC-CCCGGGGG---TTCSEEEEEEESCHHHHHHHHTT
T ss_pred hCCCCCEEEEECCCc-hhhHHHHh---cCcCEEEEEEEcCHHHHHHHHhc
Confidence 544556788999987 33333331 16654221112346777666654
No 264
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=53.95 E-value=45 Score=28.22 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
+.||++|||-... =...+++.|.+.|++|...
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 5799999997764 4568999999999999864
No 265
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=53.82 E-value=98 Score=25.93 Aligned_cols=61 Identities=7% Similarity=0.093 Sum_probs=34.9
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
..+++++. |+...+.....+.+. +++.+..... .-+++. +....+.+.+.|.+.|+.|..+
T Consensus 34 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dGiI~~-~~~~~~~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 34 ISETCNQH------GYGTQTTVSNNMNDLMDEVYKMIKQRMV--DAFILL-YSKENDPIKQMLIDESMPFIVI 97 (295)
T ss_dssp HHHHHHTT------TCEEEECCCCSHHHHHHHHHHHHHTTCC--SEEEES-CCCTTCHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEcCCCChHHHHHHHHHHHhCCc--CEEEEc-CcccChHHHHHHHhCCCCEEEE
Confidence 45677777 998876655444332 3444443321 234443 3333446777888889876544
No 266
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=53.63 E-value=60 Score=23.38 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~l~~ 123 (301)
.+++||+.-... ....+...|++.|+.+..+. +..+....+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~--------~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 75 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAG--------DGEEGERLFGL-HAPDVIITDIRMPKLGGLE-MLDRIKA 75 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEES--------SHHHHHHHHHH-HCCSEEEECSSCSSSCHHH-HHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC--------CHHHHHHHHhc-cCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 357888887654 44577888888777654322 22333334423 4688887652 23444 5566665
Q ss_pred cCCCCceEEEEchhh-HH---HHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 124 AGTPNVRIGVVGAGT-AS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 124 ~~~~~~~i~avG~~T-a~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.. ++.+++++.... .. .+.+. |.. ++++.+.+.+.|...+.+
T Consensus 76 ~~-~~~~ii~~s~~~~~~~~~~~~~~------g~~-~~l~kP~~~~~l~~~i~~ 121 (137)
T 3hdg_A 76 GG-AKPYVIVISAFSEMKYFIKAIEL------GVH-LFLPKPIEPGRLMETLED 121 (137)
T ss_dssp TT-CCCEEEECCCCCCHHHHHHHHHH------CCS-EECCSSCCHHHHHHHHHH
T ss_pred cC-CCCcEEEEecCcChHHHHHHHhC------Ccc-eeEcCCCCHHHHHHHHHH
Confidence 43 567787776543 22 23334 654 366777888888877754
No 267
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=53.62 E-value=45 Score=28.24 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~ 120 (301)
..+.|++||||-.. +=+..+++.|.++|++++.+-.-. ..+.+++.........++. +++..+++.+++.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-----FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-----CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-----HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 45789999999854 346789999999999876442211 1123333322333333332 4788899988887
Q ss_pred HHHc
Q 022176 121 WKEA 124 (301)
Q Consensus 121 l~~~ 124 (301)
+.+.
T Consensus 97 ~~~~ 100 (280)
T 3nrc_A 97 LGKV 100 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 268
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=53.56 E-value=63 Score=23.60 Aligned_cols=111 Identities=10% Similarity=0.100 Sum_probs=66.6
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhcc-
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDT- 250 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~- 250 (301)
..+||++..+.. +..+.+.|...|++|. .+.. ..+.++.+ ..+|+|++--. ...-.+++.++..
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~---~~~~------~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 78 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDII---QCGN------AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNP 78 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEE---EESS------HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTST
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEE---EeCC------HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCc
Confidence 468998888764 5778889998886543 2211 12222222 36898887521 1222344555442
Q ss_pred cCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 251 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 251 ~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
...+++++.++ ......+.+.|... ++....+.+.|.+.|...++..
T Consensus 79 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 79 QTASIPVIALSGRATAKEEAQLLDMGFID-FIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp TTTTSCEEEEESSCCHHHHHHHHHHTCSE-EEESSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 12356666653 33444555678865 5677779999999998877544
No 269
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.56 E-value=57 Score=23.16 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=61.6
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcC
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~~ 125 (301)
++||+.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|+.- ..++.+ +++.+.+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~-~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFT-VLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHH-HHHHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHH-HHHHHHhcc
Confidence 5788876554 3456777888899876422 2323333444 33568888763 234555 455565432
Q ss_pred -CCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 126 -TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 126 -~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
..+++++++.. .......+.+. .|.. ++...+.+.+.|...+..
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~---~Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALS---LGAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHH---TTCS-EEEESSCCHHHHHHHHHH
T ss_pred cccCCCEEEEecCCchHHHHHHHh---cChh-hhccCCCCHHHHHHHHHH
Confidence 34677766553 23333222211 1654 466677888888777653
No 270
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=53.40 E-value=58 Score=27.66 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-... =+..+++.|.++|++|+.+
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 468899999998764 4578999999999987653
No 271
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=53.37 E-value=62 Score=23.47 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC--hHHHHHHHHhhhcccC
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLISDTEQ 252 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS--~sav~~~~~~l~~~~~ 252 (301)
..+||++..+.. +..+.+.|++.|++|. .+. ...+.++.+ ..+|+|++-- ....-.+++.++...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~- 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVI---WAK------NEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF- 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEE---EES------SHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE---EEC------CHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC-
Confidence 358888887765 5678888998887553 211 112233332 4689888753 222233444444322
Q ss_pred CCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 253 WSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 253 ~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.+++++.++ ......+.+.|... ++....+.+.|.+.|...++.+
T Consensus 74 ~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLIINSVKAGAVD-YILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHTCSC-EEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCcce-eEeCCCCHHHHHHHHHHHHhhc
Confidence 256776663 33345556678865 5567779999999999887654
No 272
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=53.37 E-value=53 Score=27.02 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=27.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.+++||||-... =+..+++.|.++|++|+.+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 44 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIIS 44 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 567899999998765 3568999999999987753
No 273
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=53.26 E-value=66 Score=23.79 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=64.5
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l 121 (301)
+..+++|||.-... ....+...|++.|+++.. ..+..+....+ .-..+|.|++- ..++.+ +++.+
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--------~~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~l 73 (154)
T 2rjn_A 4 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIIT--------FTSPLDALEAL-KGTSVQLVISDMRMPEMGGEV-FLEQV 73 (154)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEE--------ESCHHHHHHHH-TTSCCSEEEEESSCSSSCHHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEE--------eCCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHHH
Confidence 45678899887654 446777888888876542 12223334444 23568988874 224544 45556
Q ss_pred HHcCCCCceEEEEchh-hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 122 KEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.+.. ++++++++... ......+.+..| |.. +++..+.+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~g--~~~-~~l~kP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 74 AKSY-PDIERVVISGYADAQATIDAVNRG--KIS-RFLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp HHHC-TTSEEEEEECGGGHHHHHHHHHTT--CCS-EEEESSCCHHHHHHHHHH
T ss_pred HHhC-CCCcEEEEecCCCHHHHHHHHhcc--chh-eeeeCCCCHHHHHHHHHH
Confidence 5543 46777666543 333333332111 243 456667788888777654
No 274
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=53.24 E-value=39 Score=28.51 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCCeEEEeCC----------------CC-chHHHHHHHHhCCCcEEEe
Q 022176 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 49 ~g~~IlitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.|++||||-. .+ .+..+++.+.++|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4788899877 44 6789999999999999865
No 275
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=52.83 E-value=53 Score=27.39 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=46.6
Q ss_pred CCCCCCeEEEeCCCC---chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCC--ccEEE--EeChHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~--~d~Ii--ftS~~av~~f~ 118 (301)
..+.|++||||-..+ =+..+++.|.+.|++|+.+- +.. ...+.+.+....... ...+. +++..+++.++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTY--AGE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEec--Cch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 357899999998753 46789999999999876431 111 111333333333322 22222 47889999888
Q ss_pred HHHHH
Q 022176 119 EAWKE 123 (301)
Q Consensus 119 ~~l~~ 123 (301)
+.+.+
T Consensus 79 ~~~~~ 83 (266)
T 3oig_A 79 ASIKE 83 (266)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 276
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=52.72 E-value=36 Score=29.59 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=46.0
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeC-----CCchHHHHH---HhcCCCccEEE----EeChH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQG-----PDTDRLSSV---LNADTIFDWII----ITSPE 112 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~-----~d~~~l~~~---l~~l~~~d~Ii----ftS~~ 112 (301)
..+.|++||||-... =+..+++.|.+.|++|+.+-.-+-.+. .+.+.+.+. +... .....+ +++..
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-GRRIIARQADVRDLA 120 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCCCHH
Confidence 457899999998764 456899999999999886532211110 012233322 2222 222222 36888
Q ss_pred HHHHHHHHHHH
Q 022176 113 AGSVFLEAWKE 123 (301)
Q Consensus 113 av~~f~~~l~~ 123 (301)
+++.+++.+.+
T Consensus 121 ~v~~~~~~~~~ 131 (317)
T 3oec_A 121 SLQAVVDEALA 131 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876644
No 277
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=52.70 E-value=64 Score=27.03 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
..+.|+++|||-... =+..+++.|.+.|++|..+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467899999998764 4568999999999987753
No 278
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=52.65 E-value=53 Score=22.51 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=61.9
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHHc
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~l~~~ 124 (301)
+++||+.-... ....+...|+..|+++.... +.......+.. ..+|.|++-- .++.+ +++.+.+.
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~--------~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~-~~~~l~~~ 70 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLV--------DGSTALDQLDL-LQPIVILMAWPPPDQSCLL-LLQHLREH 70 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEES--------CHHHHHHHHHH-HCCSEEEEECSTTCCTHHH-HHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEec--------CHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHhc
Confidence 46788776553 45677888998898654321 22333333423 4688888752 23443 56666654
Q ss_pred C-CCCceEEEEchhhHH-HHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 125 G-TPNVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 125 ~-~~~~~i~avG~~Ta~-~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
. ..+++++++...... .+.+. |.. ++...+.+.+.|...+...
T Consensus 71 ~~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp CCCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTT
T ss_pred cccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHH
Confidence 3 256777666543222 33344 554 3566677788887777543
No 279
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=52.58 E-value=63 Score=23.38 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=67.9
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHh-CCCeeEEEeeeeeeeCCCCcHHHHHHc---CCCCEEEEEC----hHHHHHHHHhhh
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVAS----PSAVRSWVNLIS 248 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~I~ftS----~sav~~~~~~l~ 248 (301)
..+||++-.+.. +..|.+.|++ .|++|.. +. ...+.++.+ ..+|+|++-- ....-.+++.++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~---~~------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIE---VE------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEE---EC------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEE---EC------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHH
Confidence 368999888765 5678888988 8876532 11 112233322 4588888742 233334455554
Q ss_pred cc-cCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 249 DT-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 249 ~~-~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.. ...+++++.++ +.....+.+.|... ++....+.+.|.+.|...++.+
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKFKVSD-YILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHSCCSE-EEESSCCTTHHHHHHHHHHCC-
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHHHhc
Confidence 42 12356666654 24455566788765 6677788999999999887554
No 280
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=52.51 E-value=17 Score=30.60 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=35.0
Q ss_pred CccEEEEeC---------hHHHHHHHHHHHHc--CCCCceEEEEchhhHHHHHHHhhcccCCCcee
Q 022176 102 IFDWIIITS---------PEAGSVFLEAWKEA--GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (301)
Q Consensus 102 ~~d~IiftS---------~~av~~f~~~l~~~--~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~ 156 (301)
...+||||| .|-++...+.+.+. .-.++.+++||.+....+++. |..+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCceE
Confidence 456999999 66676655544332 113578999999999999988 77653
No 281
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=52.47 E-value=9.2 Score=32.08 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCCeEEEeCCCCc--------hH----HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGK--------NG----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~--------~~----~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.+++||+.-..++ +. .+.+.+++.|.++..+-+.+ ..| +....+.+...|.|||.+|.
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~---~~D---v~~~~~~l~~aD~iv~~~P~ 93 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ---GYD---IESEIENYLWADTIIYQMPA 93 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG---CCC---HHHHHHHHHHCSEEEEEEEC
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC---ccC---HHHHHHHHHhCCEEEEECCh
Confidence 3567777543321 23 34445566799988765543 223 23334456789999999884
No 282
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=52.33 E-value=17 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=31.9
Q ss_pred EECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 259 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 259 aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.||+...+.|.+.|++++......+.++.++.+...++.
T Consensus 75 ~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~ 113 (145)
T 1p90_A 75 SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAG 113 (145)
T ss_dssp BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcC
Confidence 589999999999999986654567889999888776654
No 283
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=52.23 E-value=13 Score=30.49 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=38.0
Q ss_pred HHHHHHHhC--CCeeEEEeeeeeeeCCCC-------------------------cHHHHHHcCCCCEEEEECh-------
Q 022176 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 237 (301)
Q Consensus 192 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~-------------------------~~~~~~~~~~~d~I~ftS~------- 237 (301)
.+.+.|++. |.+|..+.+|+...+... ..++.+.+...|.|+|.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 456677766 899999999876321110 0112333567899999886
Q ss_pred HHHHHHHHhh
Q 022176 238 SAVRSWVNLI 247 (301)
Q Consensus 238 sav~~~~~~l 247 (301)
..+++|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899999987
No 284
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=52.10 E-value=53 Score=27.95 Aligned_cols=121 Identities=12% Similarity=-0.037 Sum_probs=70.0
Q ss_pred HHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHH
Q 022176 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
...+++.|.+..+.++ ++. ..+...+-+.+. ..+++.+.+|-|.=... ++++.+. ....+..
T Consensus 21 n~~~~~~gl~~~y~~~-~~~-~~~l~~~i~~~~-~~~~~G~nVT~P~K~~v-~~~ld~~--------------~~~A~~i 82 (272)
T 1p77_A 21 NKLAAQTHQTMEYIAK-LGD-LDAFEQQLLAFF-EEGAKGCNITSPFKERA-YQLADEY--------------SQRAKLA 82 (272)
T ss_dssp HHHHHHTTCCEEEEEE-ECC-TTTHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE--------------CHHHHHH
T ss_pred HHHHHHCCcCeEEEEE-EcC-HHHHHHHHHHHH-hCCCCEEEECcCCHHHH-HHHHhhc--------------CHHHHHh
Confidence 4578899999988887 333 223222222332 25789999999976554 3333221 1111222
Q ss_pred hhcccCCCceeec-------CCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 146 IQSSKCSLDVAFS-------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 146 ~~~~~~G~~~~~~-------p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
+.++.... ....++.+++..|.+.. ..+++++++.+.+....+...|.+.|.+ +.++.+
T Consensus 83 -----gavNti~~~~~g~l~g~NTD~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~---v~v~~R 150 (272)
T 1p77_A 83 -----EACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQN---IVLANR 150 (272)
T ss_dssp -----TCCSEEEECTTSCEEEECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCE---EEEEES
T ss_pred -----CCceEEEEccCCEEEEecCCHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCE---EEEEEC
Confidence 02222211 12234778888876532 2567899988866667788888888854 445544
No 285
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=51.81 E-value=38 Score=29.54 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHH--HHhhcccCCCcee--ecCCC-CcHHHHHHHhccC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE--EVIQSSKCSLDVA--FSPSK-ATGKILASELPKN 174 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~--~~~~~~~~G~~~~--~~p~~-~~~e~L~~~l~~~ 174 (301)
++.|.||-. +........+.+.+. +++++..+... ..+. .. +.... +.+.. ..+..+++.+.+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAAA-ILVAPMDE------RRKWVYKVVPNDDIMAEAIGKYIAKT 157 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCCG-GGTCSCCT------TGGGEEECSCCHHHHHHHHHHHHHHT
T ss_pred cCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCCC-ccccccCC------CCCcEEecCCCcHHHHHHHHHHHHhc
Confidence 468888853 444555556666553 57777776533 2222 11 11111 22322 2345566666654
Q ss_pred CCCCCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh-HHHHHHHHh
Q 022176 175 GKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNL 246 (301)
Q Consensus 175 ~~~~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~-sav~~~~~~ 246 (301)
..++|.++..+.. .+.+.+.|++.|.++.....|... ..+....+..+ .++|+|++.+. ..+..+++.
T Consensus 158 --g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 --GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp --TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred --CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3478887754432 346778888999877543444322 11222222222 57898887765 666677777
Q ss_pred hhcccCCCceEEE
Q 022176 247 ISDTEQWSNSVAC 259 (301)
Q Consensus 247 l~~~~~~~~~i~a 259 (301)
+.+.+. +.+++.
T Consensus 234 ~~~~g~-~~~~~~ 245 (386)
T 3sg0_A 234 LRERGF-KGAIYQ 245 (386)
T ss_dssp HHHTTC-CSEEEC
T ss_pred HHHcCC-CCcEEe
Confidence 766543 345543
No 286
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=51.71 E-value=53 Score=28.24 Aligned_cols=91 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred HHhC-CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--------HHHHHHHHHHcCC-CCceEEEEchhh
Q 022176 69 LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEAGT-PNVRIGVVGAGT 138 (301)
Q Consensus 69 L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--------v~~f~~~l~~~~~-~~~~i~avG~~T 138 (301)
|+.+ |++|+++-.- +|. +.+.+...+ .+.|.|.+.+... +..+.+.+++.+. +++++++=|...
T Consensus 152 L~~~~G~eVi~LG~~--vp~---e~iv~aa~e-~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~ 225 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQ--VAN---EDFIKKAVE-LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRI 225 (262)
T ss_dssp GGGCTTEEEEECCSS--BCH---HHHHHHHHH-TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTC
T ss_pred HHhcCCcEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcC
Confidence 7888 9999987662 222 344444423 5788887765332 3345666766665 358888888654
Q ss_pred H-HHHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 139 A-SIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 139 a-~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
. +.+++. |....+ ++...+..+++.+.
T Consensus 226 ~~~~a~~i------Gad~~~-~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 226 NNEIAKEL------GYDAGF-GPGRFADDVATFAV 253 (262)
T ss_dssp CHHHHHTT------TCSEEE-CTTCCHHHHHHHHH
T ss_pred CHHHHHHc------CCeEEE-CCchHHHHHHHHHH
Confidence 4 444555 877644 44445666655553
No 287
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=51.71 E-value=20 Score=28.55 Aligned_cols=57 Identities=5% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHHHHHHhC------CCeeEEEeeeeeeeCC--C----------------Cc--HHHHHHcCCCCEEEEECh-------H
Q 022176 192 EIEEGLSNR------GFEVVRLNTYTTEPVH--H----------------VD--QTVLKQALSIPVVAVASP-------S 238 (301)
Q Consensus 192 ~L~~~L~~~------G~~v~~~~vY~~~~~~--~----------------~~--~~~~~~~~~~d~I~ftS~-------s 238 (301)
.+.+.|++. |++|..+.+++...+. . .+ ..+.+.+...|.|+|.|| .
T Consensus 22 ~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y~~~~p~ 101 (191)
T 1t0i_A 22 YVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPA 101 (191)
T ss_dssp HHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECBTTBCCH
T ss_pred HHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceECCCCCH
Confidence 445556665 6888888887632110 0 00 123444678999999995 7
Q ss_pred HHHHHHHhhh
Q 022176 239 AVRSWVNLIS 248 (301)
Q Consensus 239 av~~~~~~l~ 248 (301)
.++.|++.+.
T Consensus 102 ~lK~~iD~~~ 111 (191)
T 1t0i_A 102 ALKNAIDRLY 111 (191)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHHHH
Confidence 8899998875
No 288
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=51.52 E-value=17 Score=31.86 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+.-.+..+...++..|+++..+|+-. ....|.+.+++.+++-.+...|++++++
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 156 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNE 156 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeec
Confidence 47789999887544347777888999999888632 1223556777777433467889888764
No 289
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=51.37 E-value=37 Score=29.37 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred cccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEece--------------eEeeeC--CCchHHHHHHhcCCCcc
Q 022176 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL--------------IQHAQG--PDTDRLSSVLNADTIFD 104 (301)
Q Consensus 42 ~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~--------------~~~~~~--~d~~~l~~~l~~l~~~d 104 (301)
+....++.||+||||-..+ =+..+++.|.+.|++|..+-. ++.... .|.+.+.+.++.. +.|
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~-~~D 90 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF-KPT 90 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH-CCS
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc-CCC
Confidence 3345778899999998754 457889999999998876422 111211 2334455555322 688
Q ss_pred EEEEeC
Q 022176 105 WIIITS 110 (301)
Q Consensus 105 ~IiftS 110 (301)
.||...
T Consensus 91 ~vih~A 96 (330)
T 2pzm_A 91 HVVHSA 96 (330)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 888765
No 290
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=51.35 E-value=64 Score=28.17 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=62.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-----------eEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.++|+|.-...-+..+++.|.+.|. +..+.. +..... .+.+.|.++ .+++.|.++.+.++....
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHT--CSTTEEEEEECCSSHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhc--ChhhccEEEEcCCccHHH
Confidence 4577777766666777777777776 543321 111111 122222221 467899999988765444
Q ss_pred HHHH--HHHcCCCCceEEEE--chhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHH
Q 022176 117 FLEA--WKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (301)
Q Consensus 117 f~~~--l~~~~~~~~~i~av--G~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~ 170 (301)
..-. +++.+ ++.++++. .+...+.+++. |.+..+.|+...+..+++.
T Consensus 192 ~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~ 242 (336)
T 1lnq_A 192 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRS 242 (336)
T ss_dssp HHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHH
Confidence 3322 23322 35567664 56667888888 9887666654444444443
No 291
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=51.11 E-value=1.3e+02 Score=26.66 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeeeeeCCCC-cHHHHHHc---CCCCEEEEE----ChHHHHHHHHhh
Q 022176 177 KKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQA---LSIPVVAVA----SPSAVRSWVNLI 247 (301)
Q Consensus 177 ~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~~~---~~~d~I~ft----S~sav~~~~~~l 247 (301)
..++|-++.-.+ -...+.+.+.++|.-+..+.-.-..+.... ..++++.+ .+-++|++. +... +.|++.+
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-~~~~~~~ 245 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-YKICRGI 245 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-HHHHHHH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-HHHHHHH
Confidence 345666554443 356677888888887777666655532332 23444433 355677776 3344 7777777
Q ss_pred hc
Q 022176 248 SD 249 (301)
Q Consensus 248 ~~ 249 (301)
++
T Consensus 246 r~ 247 (334)
T 3mwd_B 246 KE 247 (334)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 292
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=51.02 E-value=18 Score=32.50 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHHHcCC---CCceEEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGV 133 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~-------~av~~f~~~l~~~~~---~~~~i~a 133 (301)
.+++.+.+.|+++..+.+-+. +... ...++..+|.|||-|| ..++.|++.+..... .+.++++
T Consensus 276 ~i~~~l~~~g~~v~~~~~~~~----~~~~---~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~ 348 (404)
T 2ohh_A 276 AIAEGAMSEGVDVRVYCLHED----DRSE---IVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALV 348 (404)
T ss_dssp HHHHHHHTTTCEEEEEETTTS----CHHH---HHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEE
T ss_pred HHHHHHHhCCCeEEEEECCCC----CHHH---HHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEE
Confidence 444555666776654433211 1222 2334578999999998 367888887754333 5666666
Q ss_pred Ec
Q 022176 134 VG 135 (301)
Q Consensus 134 vG 135 (301)
+|
T Consensus 349 ~~ 350 (404)
T 2ohh_A 349 FG 350 (404)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 293
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=51.02 E-value=45 Score=27.95 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=34.1
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+.+.+.....+.+. +++.+.... -.-+++..... .....+.|.+.|+.+..+.
T Consensus 30 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~ 94 (291)
T 3egc_A 30 VESEARHK------GYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRTELPKTFPIVAVN 94 (291)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHHSSCTTSCEEEES
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHHhhccCCCEEEEe
Confidence 45667777 888776655444433 334443332 12344433333 5566677778888765443
No 294
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=51.01 E-value=15 Score=30.08 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=47.1
Q ss_pred CeEEEe----CCCCchHHHHHHHHh---CCCcEE-EeceeEeeeCCC--------chHHHHHHhcCCCccEEEEeChH--
Q 022176 51 PKVVVT----RERGKNGKLIKALAK---HRIDCL-ELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSPE-- 112 (301)
Q Consensus 51 ~~Ilit----R~~~~~~~l~~~L~~---~G~~v~-~~P~~~~~~~~d--------~~~l~~~l~~l~~~d~IiftS~~-- 112 (301)
++|++. |+...+..+++.+.+ .|+++. .+.+.++ |.-+ .+.+....+++...|.|||.||.
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y~ 85 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTF-PHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEYN 85 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGS-CCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCBT
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhc-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCccC
Confidence 566653 444556677776654 366666 4444331 2111 12344455567889999999974
Q ss_pred -----HHHHHHHHHHHc---CCCCceEEEEc
Q 022176 113 -----AGSVFLEAWKEA---GTPNVRIGVVG 135 (301)
Q Consensus 113 -----av~~f~~~l~~~---~~~~~~i~avG 135 (301)
..+.|++.+... .+.+.+++.++
T Consensus 86 ~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ 116 (199)
T 4hs4_A 86 YSVPGVLKNAIDWLSRVSPQPLAGKPVALVT 116 (199)
T ss_dssp TBCCHHHHHHHHHHTTSSSCTTTTCEEEEEE
T ss_pred CCcCHHHHHHHHHhcccCCcccCCCEEEEEE
Confidence 456677766442 23455555543
No 295
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=50.99 E-value=21 Score=29.03 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=47.9
Q ss_pred CeEEE----eCCCCchHHHHHHHHh---CCCcEEEeceeEeeeC--CC-----chHHHHHHhcCCCccEEEEeChH----
Q 022176 51 PKVVV----TRERGKNGKLIKALAK---HRIDCLELPLIQHAQG--PD-----TDRLSSVLNADTIFDWIIITSPE---- 112 (301)
Q Consensus 51 ~~Ili----tR~~~~~~~l~~~L~~---~G~~v~~~P~~~~~~~--~d-----~~~l~~~l~~l~~~d~IiftS~~---- 112 (301)
|+|++ +|+...+..+++.+.+ .|+++..+.+-++ |. +| .+.+....+.+...|.+||.||.
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dL-P~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~s 81 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDL-PHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNRS 81 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGS-CCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTTB
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccC-CCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhccc
Confidence 45554 4666666666665554 4777766544331 11 11 12334444456889999999973
Q ss_pred ---HHHHHHHHHHH----cCCCCceEEEEc
Q 022176 113 ---AGSVFLEAWKE----AGTPNVRIGVVG 135 (301)
Q Consensus 113 ---av~~f~~~l~~----~~~~~~~i~avG 135 (301)
..+.+++.+.. ..+.+.+++.+|
T Consensus 82 ~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 82 YPGMIKNAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp CCHHHHHHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred CCHHHHHHHHHhcccccCCccCCCEEEEEE
Confidence 55677775532 124567776663
No 296
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=50.88 E-value=58 Score=26.83 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.+.|++||||-... =...+++.|.++|++|..+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 46789999998764 4568999999999987754
No 297
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=50.80 E-value=69 Score=23.30 Aligned_cols=112 Identities=9% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh----HHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~----~av~~f~~~l~~ 123 (301)
.+++||+.-... ....+...|++.|+.... ....+..+....+ .-..+|.|++--. ++.+ +++.+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v------~~~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQL------EFVDNGAKALYQV-QQAKYDLIILDIGLPIANGFE-VMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEE------EEESSHHHHHHHH-TTCCCSEEEECTTCGGGCHHH-HHHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeE------EEECCHHHHHHHh-hcCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 467899887654 446788889999987431 1112333334444 3357898876432 3444 5566655
Q ss_pred c-CCCCceEEEEchh-hHHHHHHHhhcccCCCceeecCCCC-cHHHHHHHhc
Q 022176 124 A-GTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELP 172 (301)
Q Consensus 124 ~-~~~~~~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~ 172 (301)
. ...+++++++... ......+.+.. |.. +++..+. +.+.|...+.
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~~l~~~i~ 123 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAA---GAS-SVVDKSSNNVTDFYGRIY 123 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHT---TCS-EEEECCTTSHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHc---CCC-EEEECCCCcHHHHHHHHH
Confidence 3 2356777776543 33333332211 654 3566667 7888777664
No 298
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=50.56 E-value=51 Score=27.75 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
..++.|++||||-... =...+++.|.+.|++|+.+
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAV 43 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 3578899999998764 4568999999999998754
No 299
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=50.47 E-value=50 Score=27.46 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=48.8
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~ 120 (301)
.++.+++||||-.. .=+..+++.|.++|++|..+-.- . ...+.+.+.....+...++. +++..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~--~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG--D--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS--G--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecc--h--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 57789999999864 45678999999999987654211 1 11223333333334444443 4788999988887
Q ss_pred HHHc
Q 022176 121 WKEA 124 (301)
Q Consensus 121 l~~~ 124 (301)
+.+.
T Consensus 86 ~~~~ 89 (271)
T 3ek2_A 86 LKTH 89 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 300
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=50.43 E-value=6.8 Score=31.96 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=14.2
Q ss_pred HHHHHHHHhCC--CcEEEecee
Q 022176 63 GKLIKALAKHR--IDCLELPLI 82 (301)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~P~~ 82 (301)
+.+.+.+++.| .++..+.+.
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHHHHhCCCCeEEEeeCC
Confidence 34556677776 888888777
No 301
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=50.34 E-value=30 Score=29.17 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCCCEEEEEChH-HH-------HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 227 LSIPVVAVASPS-AV-------RSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 227 ~~~d~I~ftS~s-av-------~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
..+|+|++...+ +. +.+.+.+.+.. +++++.+...+.++++..|.+.+-+-.. ....+-+.+.+++.++
T Consensus 65 ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~--~iPv~~~~~A~~~al~~~g~~rvglltp-y~~~~~~~~~~~l~~~ 141 (240)
T 3ixl_A 65 QGAAVVSLMCTSLSFYRGAAFNAALTVAMREAT--GLPCTTMSTAVLNGLRALGVRRVALATA-YIDDVNERLAAFLAEE 141 (240)
T ss_dssp TTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHH--SSCEEEHHHHHHHHHHHTTCSEEEEEES-SCHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCcHHHHhcccchHHHHHHHHHhcc--CCCEECHHHHHHHHHHHhCCCEEEEEeC-ChHHHHHHHHHHHHHC
Confidence 477888885333 22 35555555432 5778888888888888888776544332 3344455556666554
Q ss_pred C
Q 022176 299 G 299 (301)
Q Consensus 299 ~ 299 (301)
|
T Consensus 142 G 142 (240)
T 3ixl_A 142 S 142 (240)
T ss_dssp T
T ss_pred C
Confidence 4
No 302
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=50.18 E-value=79 Score=25.33 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=60.7
Q ss_pred eChHHHHHHHHHHHHcCCC-CceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCC
Q 022176 109 TSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA 187 (301)
Q Consensus 109 tS~~av~~f~~~l~~~~~~-~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~ 187 (301)
.|+..++...+.+...+.+ ++. +..|.... .+... ..+...+.....+.+ +++.+.+....++++++....
T Consensus 85 ~s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 85 PRADRIENIQKNIDTYGLSPRMR-AVQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEE-EEESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCCCCEE-EEeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecC
Confidence 4566666666666665555 444 34455432 12211 144554443333455 666666655567787775543
Q ss_pred -cChhHHHHHHHhCCCeeEEEeeeeeeeCCC
Q 022176 188 -KASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (301)
Q Consensus 188 -~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (301)
.....+.+.|++.|.++..+.+++..+...
T Consensus 157 ~~~~~~~~~~l~~~g~~i~~i~~~~~~~~~~ 187 (204)
T 3njr_A 157 LESETLLTQLHARHGGQLLRIDIAQAEPLGR 187 (204)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEEEEEEEETT
T ss_pred cccHHHHHHHHHhCCCcEEEEEeecccccCc
Confidence 445678888999999999999888776543
No 303
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=49.91 E-value=1.2e+02 Score=27.14 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=48.8
Q ss_pred hhHHHHHHHhCCCeeEEEeeeeee----eCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHHHH
Q 022176 190 SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA 265 (301)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta 265 (301)
.+.|.+.|+++|+++..+-++-=. |.+ +.+.+ .....=...-|..+++.+.+.-.. +-+|+|+|.++.
T Consensus 190 t~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~---e~i~~-H~MHsE~~~V~~~ta~~in~aka~----G~RViAVGTTsv 261 (345)
T 1wdi_A 190 TPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEK-HEMHAEPYAIPEEVAEAVNRAKAE----GRRVVAVGTTVV 261 (345)
T ss_dssp CHHHHHHHHHTTCEEEEEEEEESGGGCCC-------------CCCEEEEECHHHHHHHHHHHHT----TCCEEEESHHHH
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcccc---cchhc-CCccceEEEECHHHHHHHHHHHHc----CCeEEEEecchH
Confidence 578999999999998777665321 222 22222 233445667788888887654322 568999999999
Q ss_pred HHHHHc
Q 022176 266 SAAKRL 271 (301)
Q Consensus 266 ~al~~~ 271 (301)
++|+..
T Consensus 262 R~LEsa 267 (345)
T 1wdi_A 262 RALESA 267 (345)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999983
No 304
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=49.83 E-value=1.2e+02 Score=25.59 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHH---HHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGK---ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e---~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
-.+++++. |+.+.+.....+.+ .+++.+.... -.-+++.......+...+.|.+ |+.|..+.
T Consensus 37 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~ 101 (303)
T 3kke_A 37 VQMAASGH------STDVLLGQIDAPPRGTQQLSRLVSEGR--VDGVLLQRREDFDDDMLAAVLE-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHT------TCCEEEEECCSTTHHHHHHHHHHHSCS--SSEEEECCCTTCCHHHHHHHHT-TSCEEEES
T ss_pred HHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCC--CcEEEEecCCCCcHHHHHHHhC-CCCEEEEC
Confidence 45667777 98887655444333 2444444332 1234444333333216667777 88765443
No 305
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=49.63 E-value=50 Score=28.19 Aligned_cols=171 Identities=10% Similarity=0.029 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~--l~~~d~IiftS~~--av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+.+.++++|+++..+. ...+.+...+.++. -.++|.||+.+.. .....++.+.+ .++++++++....
T Consensus 24 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~giPvV~~~~~~~ 95 (330)
T 3uug_A 24 NIVKQLQEAGYKTDLQY-----ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGE---QGIKVIAYDRLIR 95 (330)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHH---TTCEEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEee-----CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHH---CCCCEEEECCCCC
Confidence 35567778999887553 12232221222222 1479999997765 44445555554 4789999987542
Q ss_pred HHHHHHhhcccCCCceeecCCC-CcHHHHHHHhcc----CC-CCCCEEEEEcCCcCh-------hHHHHHHHhC---C-C
Q 022176 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPK----NG-KKKCTVLYPASAKAS-------NEIEEGLSNR---G-F 202 (301)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~----~~-~~~~~vLi~rg~~~~-------~~L~~~L~~~---G-~ 202 (301)
.. . ++...+..+. ..+..+++.|.+ .. ...++|+++.|.... .-+.+.|+++ | +
T Consensus 96 ~~---~------~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~ 166 (330)
T 3uug_A 96 NS---G------DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKL 166 (330)
T ss_dssp SC---T------TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred CC---C------ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhccccCce
Confidence 10 1 2221112222 123334444433 20 122489999886553 2345556654 3 2
Q ss_pred eeEEEee-eee-eeCCCCcH-------HHHHHc---CCCCEEEEEChHHHHHHHHhhhccc
Q 022176 203 EVVRLNT-YTT-EPVHHVDQ-------TVLKQA---LSIPVVAVASPSAVRSWVNLISDTE 251 (301)
Q Consensus 203 ~v~~~~v-Y~~-~~~~~~~~-------~~~~~~---~~~d~I~ftS~sav~~~~~~l~~~~ 251 (301)
.+..-.. |.. .......+ .++... ..+++|+..+-..+-..++.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 167 VVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp ECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTT
T ss_pred EEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcC
Confidence 2210000 000 00111111 123322 4789999988888777777777654
No 306
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=49.51 E-value=1.1e+02 Score=25.66 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=10.7
Q ss_pred CCCCEEEEEChHHHHHH
Q 022176 227 LSIPVVAVASPSAVRSW 243 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~ 243 (301)
.++|.|++.+..+...+
T Consensus 61 ~~vDgII~~~~~~~~~~ 77 (295)
T 3lft_A 61 NGNDLVVGIATPAAQGL 77 (295)
T ss_dssp SSCSEEEEESHHHHHHH
T ss_pred cCCCEEEECCcHHHHHH
Confidence 46787777776554433
No 307
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=49.49 E-value=42 Score=28.04 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~---~~~~i~avG 135 (301)
.-+.+.++++|..+....++......+ .+.+.+.|..-...|+|+.++-..+..+++.+.+.++ +++.++..+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 147 KGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 456667788887654322222111111 1234445544456889988888777777888888775 467777776
No 308
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=49.43 E-value=17 Score=29.51 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=48.7
Q ss_pred CeEEEe----CCCCchHHHHHHHHhC---CCcEE-EeceeEeeeCCC---------chHHHHHHhcCCCccEEEEeChH-
Q 022176 51 PKVVVT----RERGKNGKLIKALAKH---RIDCL-ELPLIQHAQGPD---------TDRLSSVLNADTIFDWIIITSPE- 112 (301)
Q Consensus 51 ~~Ilit----R~~~~~~~l~~~L~~~---G~~v~-~~P~~~~~~~~d---------~~~l~~~l~~l~~~d~IiftS~~- 112 (301)
++|++. |+...+..+++.+.+. |+++. .+-+.+. |.-+ .+.+....+.+...|.|||.||.
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~y 83 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIADI-PLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEY 83 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTTC-CCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHHC-CCCCcccccccCCCHHHHHHHHHHHHCCEEEEEeccc
Confidence 566653 5555666777776553 66666 4333321 1101 13344455567889999999975
Q ss_pred ------HHHHHHHHHHHc---CCCCceEEEEc
Q 022176 113 ------AGSVFLEAWKEA---GTPNVRIGVVG 135 (301)
Q Consensus 113 ------av~~f~~~l~~~---~~~~~~i~avG 135 (301)
..+.|++.+... .+.+.++++++
T Consensus 84 ~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~ 115 (193)
T 3svl_A 84 NYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQT 115 (193)
T ss_dssp TTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHhhcCccccCCCeEEEEE
Confidence 467777766542 24566666554
No 309
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=49.43 E-value=51 Score=27.53 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=25.3
Q ss_pred ccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 41 ATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 41 ~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
++.....+.|++||||-... =...+++.|.+.|++|..+
T Consensus 12 ~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~ 51 (253)
T 2nm0_A 12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAIT 51 (253)
T ss_dssp --------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34455677899999998765 3568899999999987653
No 310
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=49.41 E-value=9.5 Score=32.04 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHhC-CCcEEEeceeEeeeCC--C-------------c--hHHHHHHhcCCCccEEEEeChH
Q 022176 65 LIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 65 l~~~L~~~-G~~v~~~P~~~~~~~~--d-------------~--~~l~~~l~~l~~~d~IiftS~~ 112 (301)
+++.+++. |+++..+-+.+....+ . . +.+...++++..+|.|||.||.
T Consensus 24 i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~ 89 (242)
T 1sqs_A 24 LSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPV 89 (242)
T ss_dssp HHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccc
Confidence 34445555 8888777665432111 0 0 2333444455678888888864
No 311
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=49.33 E-value=1.2e+02 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=31.5
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+...+.....+.+. +++.+..... .-+++..... .....+.|.+.|+.+..+.
T Consensus 82 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiI~~~~~~-~~~~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 82 IEDIATMY------KYNIILSNSDQNQDKELHLLNNMLGKQV--DGIIFMSGNV-TEEHVEELKKSPVPVVLAA 146 (332)
T ss_dssp HHHHHHHH------TCEEEEEECCSHHHHHHHHHHHTSCCSS--CCEEECCSSC-CHHHHHHHTTSSSCEEEES
T ss_pred HHHHHHHc------CCEEEEEeCCCChHHHHHHHHHHHhCCC--cEEEEecCCC-CHHHHHHHHhCCCCEEEEc
Confidence 45667777 888766544444333 3334433211 1234333332 2345566777887765443
No 312
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=49.05 E-value=34 Score=30.67 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (301)
.+++|+++.+..-...+...+++.|++|..+..+
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~ 44 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPS 44 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 5689999998887888999999999988766554
No 313
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=49.04 E-value=76 Score=23.27 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~ 120 (301)
....+++|||.-... ....+...|++.|+++..+ .+.++..+.+.. ..+|.|+.- ..++.+ +++.
T Consensus 10 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~-~~~~ 79 (143)
T 3m6m_D 10 ARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLD-MLKQ 79 (143)
T ss_dssp -----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHH
T ss_pred cccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHH-HHHH
Confidence 345678999987654 3456777888888765421 122333334423 578988874 334555 3444
Q ss_pred HHH---cCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 121 WKE---AGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 121 l~~---~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
+.+ ......+++++.. ...+...+.+. .|.. ++...+.+.+.|...+...
T Consensus 80 lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~---~Ga~-~~l~KP~~~~~L~~~l~~~ 133 (143)
T 3m6m_D 80 LRVMQASGMRYTPVVVLSADVTPEAIRACEQ---AGAR-AFLAKPVVAAKLLDTLADL 133 (143)
T ss_dssp HHHHHHTTCCCCCEEEEESCCCHHHHHHHHH---TTCS-EEEESSCCHHHHHHHHHHH
T ss_pred HHhchhccCCCCeEEEEeCCCCHHHHHHHHH---cChh-heeeCCCCHHHHHHHHHHH
Confidence 442 2334566666543 33333333211 1654 4667778889988887654
No 314
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=48.79 E-value=1.2e+02 Score=25.34 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=43.8
Q ss_pred CeEEEeCCCC-chHHHHHHHHhC-CCcEEEece------------eEeeeC--CCchHHHHHHhcCCCccEEEEeCh---
Q 022176 51 PKVVVTRERG-KNGKLIKALAKH-RIDCLELPL------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSP--- 111 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~-G~~v~~~P~------------~~~~~~--~d~~~l~~~l~~l~~~d~IiftS~--- 111 (301)
|+||||-..+ -+..+++.|.+. |.+|..+-- +++... .|.+.+.+. +.+.|.||....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~---~~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEA---FKGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHH---TTTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHH---HhCCCEEEEeCCCCc
Confidence 5688887654 445777778877 888876521 222222 233445444 467899998765
Q ss_pred ------HHHHHHHHHHHHcC
Q 022176 112 ------EAGSVFLEAWKEAG 125 (301)
Q Consensus 112 ------~av~~f~~~l~~~~ 125 (301)
.+.+.+++.+.+.+
T Consensus 78 ~~~~~~~~~~~l~~aa~~~g 97 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSG 97 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHcC
Confidence 34455666666544
No 315
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=48.67 E-value=1.3e+02 Score=25.85 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=42.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEec-----------------------eeEeeeCC--CchHHHHHHhc
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELP-----------------------LIQHAQGP--DTDRLSSVLNA 99 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P-----------------------~~~~~~~~--d~~~l~~~l~~ 99 (301)
..+.+|+||||-..+ -+..+++.|.+.|++|..+- -+++...+ |.+.+...
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--- 97 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV--- 97 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH---
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH---
Confidence 345689999998765 45788899999999888752 23333322 33444444
Q ss_pred CCCccEEEEeCh
Q 022176 100 DTIFDWIIITSP 111 (301)
Q Consensus 100 l~~~d~IiftS~ 111 (301)
+.+.|.||.+..
T Consensus 98 ~~~~d~Vih~A~ 109 (351)
T 3ruf_A 98 MKGVDHVLHQAA 109 (351)
T ss_dssp TTTCSEEEECCC
T ss_pred hcCCCEEEECCc
Confidence 358999998764
No 316
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=48.62 E-value=26 Score=28.11 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=45.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-H-HHH------HHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-SVF------LEAWK 122 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-v-~~f------~~~l~ 122 (301)
++|+|..-...-....+.|++.|+++..++. + + .+..+|.||++-... + ..+ .+.+.
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 66 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR------P--E-------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLR 66 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS------G--G-------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC------h--H-------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHH
Confidence 6788886544455666999999998776543 1 1 235789999986532 2 111 11111
Q ss_pred HcCCCCceEEEEchhhHHHHHH
Q 022176 123 EAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 123 ~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
+....+.+++.|.-+. +.|-.
T Consensus 67 ~~~~~~~pilgIC~G~-q~l~~ 87 (196)
T 2nv0_A 67 EFAAQGKPMFGTCAGL-IILAK 87 (196)
T ss_dssp HHHHTTCCEEEETHHH-HHHSB
T ss_pred HHHHCCCcEEEECHHH-HHHHH
Confidence 1111367787776664 44433
No 317
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=48.45 E-value=16 Score=29.61 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=33.8
Q ss_pred CeEEEe----CCCCchHHHHHHHHh---CCCcEEEeceeEeeeCCC-------chHHHHHHhcCCCccEEEEeChH
Q 022176 51 PKVVVT----RERGKNGKLIKALAK---HRIDCLELPLIQHAQGPD-------TDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 51 ~~Ilit----R~~~~~~~l~~~L~~---~G~~v~~~P~~~~~~~~d-------~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
++||+. |+...+..+++.+.+ .|+++..+-+.+. |.-+ .+.+....+.+..+|.|||.||.
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~ 77 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV 77 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcc
Confidence 466653 323344555555443 4777777666542 2111 12344445556778888888874
No 318
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.42 E-value=31 Score=27.27 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHhCC-CcEEEeceeEeeeCCCchHHHHHHhc--C-CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022176 59 RGKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 59 ~~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~d~~~l~~~l~~--l-~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~av 134 (301)
.+...++.+.|++.| +.+..+. ..+...+...++. + ..+|.++..+...-..|...+...+.+.-.+++|
T Consensus 107 ~~~~~~~l~~l~~~g~~~~~i~t------~~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKYKLVVAT------KGDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp CTTHHHHHHHHHHHCCCEEEEEE------ESCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CccHHHHHHHHHhCCCeEEEEEe------CCchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence 345677888888888 7765432 1122222233322 2 3577777766666666666666667777788889
Q ss_pred chhh---HHHHHHHhhcccCCCceeecCC
Q 022176 135 GAGT---ASIFEEVIQSSKCSLDVAFSPS 160 (301)
Q Consensus 135 G~~T---a~~L~~~~~~~~~G~~~~~~p~ 160 (301)
|..- ...++.. |+.+..++.
T Consensus 181 GD~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 181 GNSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp ESCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCCcHHHhHHHHHC------CCeEEEecC
Confidence 8874 4667777 888877654
No 319
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=48.26 E-value=79 Score=25.71 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-... =+..+++.|.+.|++|..+
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 357799999998754 4578899999999987643
No 320
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.16 E-value=12 Score=30.63 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=14.2
Q ss_pred HHHHHHHhC--CCcEEEeceeEe
Q 022176 64 KLIKALAKH--RIDCLELPLIQH 84 (301)
Q Consensus 64 ~l~~~L~~~--G~~v~~~P~~~~ 84 (301)
.+.+.+++. |.++..+-+.+.
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSS
T ss_pred HHHHHHHHhCCCCeEEEEECCCC
Confidence 345556665 899988877654
No 321
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=47.75 E-value=87 Score=23.54 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEE------EChHHHHHHHHh
Q 022176 176 KKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV------ASPSAVRSWVNL 246 (301)
Q Consensus 176 ~~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~f------tS~sav~~~~~~ 246 (301)
+++-|||++--+.. +..+...|++.| |+.+.......+.++.+ ..+|.|+. .++-.+-.-+..
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G--------~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~ 81 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLG--------FNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRA 81 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTT--------CCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcC--------CcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHh
Q ss_pred hhcccCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 247 ISDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 247 l~~~~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
..... +++++.+. +.....+.+.|... ++.+..+.+.|.+.|.+.++.
T Consensus 82 ~~~~~--~ipvI~lTa~~~~~~~~~~~~~Ga~~-yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 82 DEELK--HLPVLMITAEAKREQIIEAAQAGVNG-YIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp STTTT--TCCEEEEESSCCHHHHHHHHHTTCCE-EEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCC--CCeEEEEECCCCHHHHHHHHHCCCCE-EEECCCCHHHHHHHHHHHHhc
No 322
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=47.59 E-value=70 Score=27.74 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=54.3
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iif-tS~~av~~f~~~l~ 122 (301)
..++|.+..+.. ..+.+.+.|+++|+++.....+... ..|.....+.+.+ .+.|.|++ .+...+..+++.+.
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~ 227 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYA 227 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 456777654332 2356777889999987543332211 1233333333322 36788888 67777777888888
Q ss_pred HcCCCCceEEEEchhhHHHHH
Q 022176 123 EAGTPNVRIGVVGAGTASIFE 143 (301)
Q Consensus 123 ~~~~~~~~i~avG~~Ta~~L~ 143 (301)
+.++. ++++..|..+...++
T Consensus 228 ~~g~~-vp~~~~~~~~~~~~~ 247 (375)
T 4evq_A 228 AANLG-IPLWGPGFLTDGVEA 247 (375)
T ss_dssp HTTCC-CCEEEEGGGTTTTHH
T ss_pred HcCCC-ceEEecCcCCHHHHH
Confidence 88765 777777643333333
No 323
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=47.47 E-value=78 Score=22.92 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=65.2
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh----HHHHHHHHhhhcc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSWVNLISDT 250 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~----sav~~~~~~l~~~ 250 (301)
..+||++-.+.. +..+...|++.|+.|... . ...+.++.+ ..+|+|+.--. .+.+ +++.++..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~-~~~~al~~~~~~~~dlvl~D~~lp~~~g~~-~~~~lr~~ 73 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------A-SGEEALQQIYKNLPDALICDVLLPGIDGYT-LCKRVRQH 73 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------S-SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------C-CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH-HHHHHHcC
Confidence 358888877754 567888899888765321 1 122233222 57888887421 2222 33334332
Q ss_pred c-CCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 251 E-QWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 251 ~-~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
. ...++++.++. .....+.+.|... ++.+..+.+.|++.|.+.+...
T Consensus 74 ~~~~~~pii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 74 PLTKTLPILMLTAQGDISAKIAGFEAGAND-YLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp GGGTTCCEEEEECTTCHHHHHHHHHHTCSE-EEETTCCHHHHHHHHHHHHHC-
T ss_pred CCcCCccEEEEecCCCHHHHHHHHhcCcce-EEeCCCCHHHHHHHHHHHHhcc
Confidence 1 22556665542 3344455678765 6678889999999999887643
No 324
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=47.46 E-value=1.4e+02 Score=26.03 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhC-CCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHc
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEA 124 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av-~~f~~~l~~~ 124 (301)
|..+++|+++.+. .+...+.|++. |+++...+ .....+.+++.+ .+.++|.++..+...+ ..+++.+
T Consensus 5 ~~~~~~il~~~~~--~~~~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~l~~~--- 73 (330)
T 2gcg_A 5 PVRLMKVFVTRRI--PAEGRVALARAADCEVEQWD---SDEPIPAKELER---GVAGAHGLLCLLSDHVDKRILDAA--- 73 (330)
T ss_dssp --CCEEEEESSCC--CHHHHHHHHHCTTEEEEECC---SSSCCCHHHHHH---HHTTCSEEEECTTSCBCHHHHHHH---
T ss_pred CCCCCEEEEECCC--CHHHHHHHHhcCCceEEEec---CCCCCCHHHHHH---HhcCCeEEEECCCCCCCHHHHHhc---
Confidence 4445689998753 35566777776 35544322 000112233333 4578899886543222 1233332
Q ss_pred CCCCceEEE---Echhh--HHHHHHHhhcccCCCceeecCCCCcHHHHHHH-------h-c------------cC-----
Q 022176 125 GTPNVRIGV---VGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-P------------KN----- 174 (301)
Q Consensus 125 ~~~~~~i~a---vG~~T--a~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------l-~------------~~----- 174 (301)
+ +++|+++ +|-.. .+++.+. |+.+.-.|.. +++.+++. + . .+
T Consensus 74 ~-~~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~~~-~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~ 145 (330)
T 2gcg_A 74 G-ANLKVISTMSVGIDHLALDEIKKR------GIRVGYTPDV-LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP 145 (330)
T ss_dssp C-TTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCST-THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCT
T ss_pred C-CCceEEEECCcccccccHHHHHhC------CceEEeCCCC-ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCc
Confidence 1 2445444 33222 3566777 8887666543 33333221 1 0 01
Q ss_pred ------CCCCCEEEEEcCCcChhHHHHHHHhCCCeeE
Q 022176 175 ------GKKKCTVLYPASAKASNEIEEGLSNRGFEVV 205 (301)
Q Consensus 175 ------~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~ 205 (301)
...+++|.++....-...+...|...|.+|.
T Consensus 146 ~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~ 182 (330)
T 2gcg_A 146 LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF 182 (330)
T ss_dssp TSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEE
T ss_pred ccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE
Confidence 1257789999887778889999999998754
No 325
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=47.44 E-value=66 Score=27.53 Aligned_cols=74 Identities=11% Similarity=0.012 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~ 120 (301)
..+.|++||||-.. .-+..+++.|.+.|++|..+-.- . ...+.+.+.....+...++. +++..+++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~--~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS--E--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS--G--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC--h--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 56789999999875 55678999999999997654211 1 11122333332223322222 4788899988887
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 102 ~~~ 104 (296)
T 3k31_A 102 LAE 104 (296)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 326
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=47.42 E-value=78 Score=27.89 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=43.9
Q ss_pred CCCEEEEEC---------hHHHHHHHHhhhcccCCCceEEEECHHHHHHHHH-cCCCeeE----ecC-CCCHHHHHHHHH
Q 022176 228 SIPVVAVAS---------PSAVRSWVNLISDTEQWSNSVACIGETTASAAKR-LGLKNVY----YPT-HPGLEGWVDSIL 292 (301)
Q Consensus 228 ~~d~I~ftS---------~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~-~G~~~~~----v~~-~ps~e~ll~ai~ 292 (301)
+..+|+||| .+.++...+.+.+.. +..+++||.+..+.+++ .|...+. +.+ .|+.+...+...
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k~~~~~i~~~~--g~~l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~~ 181 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAKAVRRHLNDQP--NADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIAD 181 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHHHHHHSSSSCT--TCEEEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHHH
T ss_pred ceEEEEEeCCCcccchhhHHHHHHHHHHHHhcC--CCEEEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHHH
Confidence 345899999 888888877665411 22399999999999998 5877532 224 677775544443
Q ss_pred HH
Q 022176 293 EA 294 (301)
Q Consensus 293 ~~ 294 (301)
+.
T Consensus 182 ~i 183 (311)
T 2xok_G 182 KL 183 (311)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 327
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=47.36 E-value=94 Score=23.86 Aligned_cols=122 Identities=4% Similarity=-0.033 Sum_probs=62.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHH--hCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHH--
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-- 239 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sa-- 239 (301)
.+.+++.+... .+-+++++......+.+.+.++ ..|..- .+.....++ .+++...+...|+++++|...
T Consensus 38 ~~~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~-~v~~~g~~~----~~e~~~~~~~adi~v~ps~~e~~ 110 (177)
T 2f9f_A 38 IELQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPD-NVKFLGSVS----EEELIDLYSRCKGLLCTAKDEDF 110 (177)
T ss_dssp HHHHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCT-TEEEEESCC----HHHHHHHHHHCSEEEECCSSCCS
T ss_pred HHHHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCC-cEEEeCCCC----HHHHHHHHHhCCEEEeCCCcCCC
Confidence 34455555543 2457777766555556666666 433210 112222211 123333345688999866310
Q ss_pred HHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 240 VRSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 240 v~~~~~~l~~~~~~~~~i~aIG~~-Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
--.+++.+. .++++++.... ..+.++ .|..-.++ ..+.+++.++|.+.+.+++
T Consensus 111 ~~~~~Eama----~G~PvI~~~~~~~~e~i~-~~~~g~~~--~~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 111 GLTPIEAMA----SGKPVIAVNEGGFKETVI-NEKTGYLV--NADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp CHHHHHHHH----TTCCEEEESSHHHHHHCC-BTTTEEEE--CSCHHHHHHHHHHHHHCTT
T ss_pred ChHHHHHHH----cCCcEEEeCCCCHHHHhc-CCCccEEe--CCCHHHHHHHHHHHHhCHH
Confidence 001233332 25677765432 223332 23333344 5689999999999987654
No 328
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=47.33 E-value=28 Score=30.25 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=34.0
Q ss_pred CCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECHH--------HHHHHHHcCCCeeEecC-CCCHHHHHHHHHH
Q 022176 227 LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET--------TASAAKRLGLKNVYYPT-HPGLEGWVDSILE 293 (301)
Q Consensus 227 ~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~--------Ta~al~~~G~~~~~v~~-~ps~e~ll~ai~~ 293 (301)
...|+++++|. -..+++.+.- ++++++..-. .++.+.+.|.. ..++. ..+.++|.++|.+
T Consensus 253 ~~ad~~v~~sg--~~~~~EAma~----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~g-~~~~~~d~~~~~la~~i~~ 321 (364)
T 1f0k_A 253 AWADVVVCRSG--ALTVSEIAAA----GLPALFVPFQHKDRQQYWNALPLEKAGAA-KIIEQPQLSVDAVANTLAG 321 (364)
T ss_dssp HHCSEEEECCC--HHHHHHHHHH----TCCEEECCCCCTTCHHHHHHHHHHHTTSE-EECCGGGCCHHHHHHHHHT
T ss_pred HhCCEEEECCc--hHHHHHHHHh----CCCEEEeeCCCCchhHHHHHHHHHhCCcE-EEeccccCCHHHHHHHHHh
Confidence 45788998886 3334444432 4566654211 24567777763 33332 2347888888864
No 329
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=47.18 E-value=17 Score=29.03 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHhcCCCccEEEEeChH
Q 022176 94 SSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 94 ~~~l~~l~~~d~IiftS~~ 112 (301)
......+..+|.|||.||.
T Consensus 76 ~~~~~~l~~aD~iI~~sP~ 94 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVTPQ 94 (191)
T ss_dssp HHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEece
Confidence 3444456778888888874
No 330
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=47.09 E-value=28 Score=31.41 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCeEEEeCCC--CchHH----HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHH
Q 022176 50 NPKVVVTRER--GKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (301)
Q Consensus 50 g~~IlitR~~--~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-------av~~ 116 (301)
.++|++...+ +.... +++.+.+.|+++..+.+-+ . + +.....++..+|.|||-||. .++.
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~---~-~---~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTS---S-D---ITKVALHTYDSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGG---C-C---HHHHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCc---C-C---HHHHHHHHHhCCEEEEEcCccCcCchHHHHH
Confidence 4666664332 33334 4445556787765544322 1 1 12222345689999999973 6788
Q ss_pred HHHHHHHcCC-CCceEEEEc
Q 022176 117 FLEAWKEAGT-PNVRIGVVG 135 (301)
Q Consensus 117 f~~~l~~~~~-~~~~i~avG 135 (301)
|++.+..... .+.+++++|
T Consensus 329 fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHhhcccCCCEEEEEE
Confidence 8887765444 556666554
No 331
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=46.95 E-value=31 Score=30.94 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhcccC---CCceEEEE
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDTEQ---WSNSVACI 260 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~~~~---~~~~i~aI 260 (301)
+.+.+.|.+.|+++..+.+.+ .....+...+.++|.|+|-|| ..++.|++.+..... .+.+++++
T Consensus 275 ~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 275 HAIAEGAMSEGVDVRVYCLHE-----DDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp HHHHHHHHTTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 356667777787665544422 122334444678999999998 579999987754221 23344333
Q ss_pred C---------HHHHHHHHHcCCCe
Q 022176 261 G---------ETTASAAKRLGLKN 275 (301)
Q Consensus 261 G---------~~Ta~al~~~G~~~ 275 (301)
| ....+.+...|+..
T Consensus 350 ~~~g~~~~a~~~l~~~l~~~g~~~ 373 (404)
T 2ohh_A 350 GSMGGNGGATGTMKELLAEAGFDV 373 (404)
T ss_dssp EEESSSCCHHHHHHHHHHHTTEEE
T ss_pred EecCCCChhHHHHHHHHHHCCCEE
Confidence 1 23455566678765
No 332
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=46.93 E-value=84 Score=23.15 Aligned_cols=114 Identities=7% Similarity=0.098 Sum_probs=61.3
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHh-CCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~-~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l 121 (301)
..+++||+.-... ....+...|++ .|+++.. ...+..+....+ .-..+|.|++- ..++.+ +++.+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~-------~~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~l 73 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVA-------EAADAGEAYRLY-RETTPDIVVMDLTLPGPGGIE-ATRHI 73 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEE-------EESSHHHHHHHH-HTTCCSEEEECSCCSSSCHHH-HHHHH
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEE-------EeCCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHHH
Confidence 3467888887654 34566777776 5655431 112333333444 23568988863 234554 45556
Q ss_pred HHcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC
Q 022176 122 KEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (301)
Q Consensus 122 ~~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~ 175 (301)
.+.. +..+++++.. .......+.+.. |.. ++...+.+.+.|...+....
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 74 RQWD-GAARILIFTMHQGSAFALKAFEA---GAS-GYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHC-TTCCEEEEESCCSHHHHHHHHHT---TCS-EEEETTSCTTHHHHHHHHHT
T ss_pred HHhC-CCCeEEEEECCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHHH
Confidence 5543 4566666543 333333333211 554 35556677788877776543
No 333
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=46.76 E-value=33 Score=30.09 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=33.3
Q ss_pred cCCCCEEEEEChHHHHHHHHh--hhcccCCCceEEE--ECHHHHHHHHHcCCCeeEecC
Q 022176 226 ALSIPVVAVASPSAVRSWVNL--ISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 226 ~~~~d~I~ftS~sav~~~~~~--l~~~~~~~~~i~a--IG~~Ta~al~~~G~~~~~v~~ 280 (301)
+.+.|.++.+.++...+..-. +++.+ .+.++++ ..+.-.+.+++.|...++.|+
T Consensus 175 i~~a~~vi~~~~~d~~n~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~G~d~vi~~~ 232 (336)
T 1lnq_A 175 VRGARAVIVDLESDSETIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 232 (336)
T ss_dssp STTEEEEEECCSSHHHHHHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHTTCSEEECHH
T ss_pred hhhccEEEEcCCccHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHcCCCEEEChh
Confidence 367888888777554444332 22222 2445554 467778889999998766444
No 334
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=46.65 E-value=78 Score=22.70 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-----hHHHHHHHHhhh
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-----PSAVRSWVNLIS 248 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-----~sav~~~~~~l~ 248 (301)
...+||++..+.. +..+...|+..|+++.. ++.. ..+.++.+ ..+|+|++-- .... .+++.++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--~~~~------~~~a~~~~~~~~~dlii~d~~~~~~~~g~-~~~~~l~ 78 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLG--VFDN------GEEAVRCAPDLRPDIALVDIMLCGALDGV-ETAARLA 78 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEE--EESS------HHHHHHHHHHHCCSEEEEESSCCSSSCHH-HHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEE--EECC------HHHHHHHHHhCCCCEEEEecCCCCCCCHH-HHHHHHH
Confidence 3468999888765 56788889888875521 1111 12222221 3689888751 2333 3444444
Q ss_pred cccCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 249 DTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 249 ~~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.. ..++++.++. .....+.+.|... ++....+.+.|.+.|...++.
T Consensus 79 ~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 79 AG--CNLPIIFITSSQDVETFQRAKRVNPFG-YLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp HH--SCCCEEEEECCCCHHHHHHHHTTCCSE-EEEESCCHHHHHHHHHHHHHH
T ss_pred hC--CCCCEEEEecCCCHHHHHHHHhcCCCE-EEeCCCCHHHHHHHHHHHHhc
Confidence 33 2566665532 3344455678765 556667899999999887643
No 335
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=46.21 E-value=30 Score=27.52 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=44.4
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH--------HHHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~--------f~~~l~ 122 (301)
|+|+|..-.+.-..+.+.|++.|+++..+|. + + .+..+|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~------~--~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR------V--E-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS------G--G-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC------h--H-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 5678776545556778999999998876652 1 1 346789999987644221 122222
Q ss_pred HcCCCCceEEEEchhh
Q 022176 123 EAGTPNVRIGVVGAGT 138 (301)
Q Consensus 123 ~~~~~~~~i~avG~~T 138 (301)
..+.+++.|.-+-
T Consensus 66 ---~~~~PilGIC~G~ 78 (186)
T 2ywj_A 66 ---NSNLPILGTCAGM 78 (186)
T ss_dssp ---TCCCCEEEETHHH
T ss_pred ---hcCCcEEEECHHH
Confidence 2467787776653
No 336
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=46.07 E-value=93 Score=30.64 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCc-Ch----hHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEChHH----------
Q 022176 177 KKCTVLYPASAK-AS----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSA---------- 239 (301)
Q Consensus 177 ~~~~vLi~rg~~-~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~sa---------- 239 (301)
.+++|+++-+++ .. ..+.+.|++.|+.|..+-.-.- ... ...+.. ...||+|++.....
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g---~Gv-D~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d 611 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA---SGV-DQTYSAADATAFDAVVVAEGAERVFSGKGAMS 611 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC---TTC-CEETTTCCGGGCSEEEECTTCCTTTSTTTTCC
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC---CCc-ccCcccCChhcCcEEEECCCcccccccccchh
Confidence 678999998876 22 4567999999999877655321 101 111111 13699999977632
Q ss_pred -------HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCee---EecCCCCHHHHHHHHHHHHHccCC
Q 022176 240 -------VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV---YYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 240 -------v~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~---~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
+..|+...-+ ....|.+|+.. ...|.+.|+... ++. .+..+.++.+.+.+..|+.
T Consensus 612 ~Lr~~~~a~~fV~e~~~---hgKpIAAIchg-p~lL~~AGI~~~~~g~~~--~~~~~~~~~~~~~~~~~r~ 676 (688)
T 3ej6_A 612 PLFPAGRPSQILTDGYR---WGKPVAAVGSA-KKALQSIGVEEKEAGVYA--GAQDEVIKGVEEGLKVFKF 676 (688)
T ss_dssp TTSCTTHHHHHHHHHHH---TTCCEEEEGGG-HHHHHHTTCCSSSTTEEE--ECHHHHHHHHHHHHHHCCC
T ss_pred hhccCHHHHHHHHHHHH---cCCEEEEeCcc-HHHHHHcCCCCCCCeEEe--cCcHHHHHHHHHHHHhcCC
Confidence 2233322222 25667777643 366777787431 222 2356677777777777763
No 337
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=45.59 E-value=69 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 178 ~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
.++||++.+......+...+++.|.+|..+..
T Consensus 11 ~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 46899997755466788889999988765554
No 338
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=45.57 E-value=1.6e+02 Score=25.99 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=34.2
Q ss_pred cCCCCEEEEEChHH--HHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 226 ALSIPVVAVASPSA--VRSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 226 ~~~~d~I~ftS~sa--v~~~~~~l~~~~~~~~~i~aIG~~-Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
+...|+++++|... -..+++.+. .++++++.... ..+.+.+ |..-.+ .+..+.++|.++|.+.+.++
T Consensus 323 ~~~adv~v~ps~~e~~~~~~~Eama----~G~PvI~~~~~~~~e~i~~-~~~g~~-~~~~d~~~la~~i~~l~~~~ 392 (438)
T 3c48_A 323 YRAADIVAVPSFNESFGLVAMEAQA----SGTPVIAARVGGLPIAVAE-GETGLL-VDGHSPHAWADALATLLDDD 392 (438)
T ss_dssp HHHCSEEEECCSCCSSCHHHHHHHH----TTCCEEEESCTTHHHHSCB-TTTEEE-ESSCCHHHHHHHHHHHHHCH
T ss_pred HHhCCEEEECccccCCchHHHHHHH----cCCCEEecCCCChhHHhhC-CCcEEE-CCCCCHHHHHHHHHHHHcCH
Confidence 44677777777210 001222221 25666665322 2333322 322223 34458999999999887643
No 339
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=45.55 E-value=51 Score=29.49 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeE-------------eeeCCCchHHHHHHhcCCCccEEEEe-ChHH
Q 022176 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (301)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~d~~~l~~~l~~l~~~d~Iift-S~~a 113 (301)
..+++|||+-....+-.+++.+++.|++++.+-... ..+..|.+.+.+.+ +-.+.|.|+.. +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 467899999877777889999999999988773211 11222334444444 23467888763 3344
Q ss_pred HHHHHHHHHHcC
Q 022176 114 GSVFLEAWKEAG 125 (301)
Q Consensus 114 v~~f~~~l~~~~ 125 (301)
+..+.+.++..+
T Consensus 84 ~~~~a~~~~~~g 95 (403)
T 4dim_A 84 IVSLARICDKEN 95 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 444545445444
No 340
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.50 E-value=77 Score=22.30 Aligned_cols=106 Identities=13% Similarity=0.170 Sum_probs=64.2
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHhhhccc
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 251 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS----~sav~~~~~~l~~~~ 251 (301)
.+||++-.+.. +..+...|+..|++|.. .. ...+.++.+ ..+|+|++-- ..+.+ +++.++...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlii~D~~~p~~~g~~-~~~~lr~~~ 72 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHC---AH------DGNEAVEMVEELQPDLILLDIMLPNKDGVE-VCREVRKKY 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHTTCCSEEEEETTSTTTHHHH-HHHHHHTTC
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEE---eC------CHHHHHHHHhhCCCCEEEEeCCCCCCCHHH-HHHHHHhcC
Confidence 57888877654 56788889998876532 11 122233322 5788888742 23333 344444322
Q ss_pred CCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 252 QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 252 ~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
+.+++.+. ......+.+.|... ++.+..+.+.|++.+...++.
T Consensus 73 --~~~ii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 73 --DMPIIMLTAKDSEIDKVIGLEIGADD-YVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp --CSCEEEEEESSCHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTC
T ss_pred --CCCEEEEECCCChHHHHHHHhCCcce-eEcCCCCHHHHHHHHHHHHhc
Confidence 45555543 23344556778764 667778999999999887753
No 341
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=45.47 E-value=69 Score=28.53 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=53.8
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC--hHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS--~~av~~f~~~l 121 (301)
..++|.+..+.. ....+.+.+++.|+++...-.+... ..|...+...+.. .+.|.|++.+ +.....|++++
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-VSDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS-CSCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC-CccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 447777766543 2245666777889988754433321 1344433344423 5789998874 45667788888
Q ss_pred HHcCCCCceEEE-EchhhHHHHH
Q 022176 122 KEAGTPNVRIGV-VGAGTASIFE 143 (301)
Q Consensus 122 ~~~~~~~~~i~a-vG~~Ta~~L~ 143 (301)
.+.++ +.+++. -|..+.+.++
T Consensus 241 ~~~g~-~~~~~~~~~~~~~~~~~ 262 (419)
T 3h5l_A 241 MTDPT-NSLVYLQYGASLAAFRD 262 (419)
T ss_dssp TTSCC-SCEEEECSGGGSHHHHH
T ss_pred HHcCC-CceEEecCCCCcHHHHH
Confidence 87777 445444 3444444443
No 342
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=45.43 E-value=29 Score=29.22 Aligned_cols=8 Identities=25% Similarity=-0.176 Sum_probs=4.1
Q ss_pred CCCCEEEE
Q 022176 227 LSIPVVAV 234 (301)
Q Consensus 227 ~~~d~I~f 234 (301)
+.+|+++-
T Consensus 85 G~iD~lvn 92 (256)
T 4fs3_A 85 GNIDGVYH 92 (256)
T ss_dssp CCCSEEEE
T ss_pred CCCCEEEe
Confidence 45555543
No 343
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=45.30 E-value=30 Score=25.48 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCC--chHHHHHHHHhCCCcEE
Q 022176 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (301)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l~~~L~~~G~~v~ 77 (301)
.++.|++|++|-.-. ..+++.+.++++|+.|.
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 579999999997664 46889999999999876
No 344
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=45.19 E-value=1e+02 Score=23.56 Aligned_cols=36 Identities=6% Similarity=-0.058 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeec
Q 022176 113 AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (301)
Q Consensus 113 av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~ 158 (301)
.+-.|.+.+.+. +.++++-| .|++.|++. |+.+..+
T Consensus 38 ~l~~~a~~l~~l---Gf~i~AT~-GTa~~L~~~------Gi~v~~v 73 (143)
T 2yvq_A 38 RFLGVAEQLHNE---GFKLFATE-ATSDWLNAN------NVPATPV 73 (143)
T ss_dssp HHHHHHHHHHTT---TCEEEEEH-HHHHHHHHT------TCCCEEE
T ss_pred HHHHHHHHHHHC---CCEEEECc-hHHHHHHHc------CCeEEEE
Confidence 344456656553 67899997 789999998 9988665
No 345
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=45.14 E-value=1.4e+02 Score=25.15 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=53.7
Q ss_pred EEEEEcC-CcChhHHHHHHHhC-CCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEE-EEChHHHHHHHHhhhcccCCCce
Q 022176 180 TVLYPAS-AKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSWVNLISDTEQWSNS 256 (301)
Q Consensus 180 ~vLi~rg-~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~-ftS~sav~~~~~~l~~~~~~~~~ 256 (301)
||+++.. ..-...+.+.+.+. |.++ +.++++ ..+.+.+.. ..+|+++ ||+|.++...+..+.+. +++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~el--va~~d~---~~dl~~~~~--~~~DvvIDfT~p~a~~~~~~~a~~~---g~~ 71 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTL--SAELDA---GDPLSLLTD--GNTEVVIDFTHPDVVMGNLEFLIDN---GIH 71 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEE--EEEECT---TCCTHHHHH--TTCCEEEECSCTTTHHHHHHHHHHT---TCE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEE--EEEEcc---CCCHHHHhc--cCCcEEEEccChHHHHHHHHHHHHc---CCC
Confidence 5777764 33344566666654 6655 334443 122333332 3689999 99999998887776554 344
Q ss_pred EEE----ECHHHHHHHHHc-----CCCeeEecCCCCHHH
Q 022176 257 VAC----IGETTASAAKRL-----GLKNVYYPTHPGLEG 286 (301)
Q Consensus 257 i~a----IG~~Ta~al~~~-----G~~~~~v~~~ps~e~ 286 (301)
+++ ..+.-.+.+++. +.. ++++.+.+...
T Consensus 72 ~VigTTG~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv 109 (245)
T 1p9l_A 72 AVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFAIGA 109 (245)
T ss_dssp EEECCCCCCHHHHHHHHHHHHTSTTCE-EEECSCCCHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHhCCCCC-EEEECCccHHH
Confidence 443 233333344332 554 45577777653
No 346
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=45.00 E-value=72 Score=26.06 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC--CccEEEE----eChHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~--~~d~Iif----tS~~av~~f~ 118 (301)
..+.|++||||-... =+..+++.|.++|++|+.+- ......+.+.+.+.... ....+.+ ++..+++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG----RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe----cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 457899999998764 35689999999999876431 10011123333343332 2222222 7788888888
Q ss_pred HHHHH
Q 022176 119 EAWKE 123 (301)
Q Consensus 119 ~~l~~ 123 (301)
+.+.+
T Consensus 86 ~~~~~ 90 (247)
T 3i1j_A 86 ARVEH 90 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 347
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=44.90 E-value=1.6e+02 Score=27.26 Aligned_cols=127 Identities=11% Similarity=0.113 Sum_probs=69.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee--------------eeCCCCcHHHHHH--cC
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT--------------EPVHHVDQTVLKQ--AL 227 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~--------------~~~~~~~~~~~~~--~~ 227 (301)
-+.+.+.+.......++++++.|......|++.|++. .+|.-+..=+. ..-+.....++++ +.
T Consensus 221 i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~ 299 (461)
T 4g65_A 221 IRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-YSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENID 299 (461)
T ss_dssp HHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGG
T ss_pred HHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-CceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCch
Confidence 4555566654444567999999999999999999764 66544432100 1111222334443 35
Q ss_pred CCCEEEE-EChHHHHHHHHhhhcccCCCceEEE--ECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHH
Q 022176 228 SIPVVAV-ASPSAVRSWVNLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 296 (301)
Q Consensus 228 ~~d~I~f-tS~sav~~~~~~l~~~~~~~~~i~a--IG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~ 296 (301)
+.|+++- |.-....-+..++.+... -.++++ --+.-.+.+++.|+..++-|..- .+..|.+++.
T Consensus 300 ~~D~~ia~T~~De~Ni~~~llAk~~g-v~kvIa~vn~~~~~~l~~~~gid~visp~~~----~a~~I~~~i~ 366 (461)
T 4g65_A 300 QVDVFIALTNEDETNIMSAMLAKRMG-AKKVMVLIQRGAYVDLVQGGVIDVAISPQQA----TISALLTHVR 366 (461)
T ss_dssp GCSEEEECCSCHHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHCSSSSCEEECHHHH----HHHHHHHHHH
T ss_pred hhcEEEEcccCcHHHHHHHHHHHHcC-CccccccccccchhhhhhccccceeeCHHHH----HHHHHHHHhh
Confidence 6775554 555566666555554321 223333 34555566667888776644433 3444444443
No 348
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=44.82 E-value=40 Score=29.76 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-cEEE
Q 022176 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLE 78 (301)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~ 78 (301)
..+.|+++||+-..+-+...+..|.+.|+ ++..
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i 183 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISI 183 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEE
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEE
Confidence 46789999999876666788889999998 4543
No 349
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=44.74 E-value=72 Score=28.00 Aligned_cols=147 Identities=12% Similarity=-0.048 Sum_probs=78.6
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCce--eecCCC-CcHHHHHHHhccCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~l~~~~~ 176 (301)
.+.+.||-. +..........+.+. +++++..+..+...-.+. +.+. .+.|.. ..+..+++.+...
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~l~~~~------~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTDALTWEK------GNRYTYRLRPSTYMQAAMLAAEAAKL-- 140 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCGGGTTTT------CCTTEEECSCCHHHHHHHHHHHHTTS--
T ss_pred cCCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCchhhhhcc------CCCCEEEeCCChHHHHHHHHHHHHHc--
Confidence 467888764 344444555656553 567777665432221111 2211 123332 2345566666654
Q ss_pred CCCEEEEEcCCcC-----hhHHHHHHHhC--CCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEE-ChHHHHHHHHh
Q 022176 177 KKCTVLYPASAKA-----SNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSWVNL 246 (301)
Q Consensus 177 ~~~~vLi~rg~~~-----~~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ft-S~sav~~~~~~ 246 (301)
..++|.++..+.. ...+.+.|++. |.++.....|... ..+....+..+ .++|+|++. +...+..|++.
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~ 218 (387)
T 3i45_A 141 PITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVRE 218 (387)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHH
T ss_pred CCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHH
Confidence 3578888876542 34677788887 7776544444321 12222223322 578887765 66667777777
Q ss_pred hhcccCC-CceEEEE
Q 022176 247 ISDTEQW-SNSVACI 260 (301)
Q Consensus 247 l~~~~~~-~~~i~aI 260 (301)
+.+.+.. +..++..
T Consensus 219 ~~~~g~~~~~~i~~~ 233 (387)
T 3i45_A 219 GRVRGLFAGRQVVSM 233 (387)
T ss_dssp HHHHTSSTTCEEEEE
T ss_pred HHHcCCCCCCeEEee
Confidence 7665432 3445443
No 350
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=44.72 E-value=1.5e+02 Score=25.45 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC---CceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP---NVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~----~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~---~~~i~avG 135 (301)
.-+.+.|+++|. +.....+ ....+. +.+.+.|..-...|+|+..+-..+...++.+.+.++. ++.++..+
T Consensus 165 ~Gf~~~l~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d 241 (350)
T 3h75_A 165 RGLRRALAEHPQ-VHLRQLV--YGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVN 241 (350)
T ss_dssp HHHHHHHHHCTT-EEEEEEE--ECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHHHHHHCCC-eEEEEEe--eCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecC
Confidence 456677888886 3222222 111122 2345556555678999888887777788888888864 78888887
Q ss_pred hhh
Q 022176 136 AGT 138 (301)
Q Consensus 136 ~~T 138 (301)
...
T Consensus 242 ~~~ 244 (350)
T 3h75_A 242 SSP 244 (350)
T ss_dssp CCH
T ss_pred CCH
Confidence 554
No 351
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=44.72 E-value=27 Score=30.59 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=46.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH---H----HHHHHHHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~---a----v~~f~~~l 121 (301)
.|.+|+++.+......+...++..|+++..+|+..-....|.+.+++.+.. .+...|++++++ + ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 577888886544344444677888999998886311112355677777743 356788888766 3 34455555
Q ss_pred HHc
Q 022176 122 KEA 124 (301)
Q Consensus 122 ~~~ 124 (301)
.+.
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 352
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.63 E-value=1.3e+02 Score=24.79 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=35.5
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
-.+++++. |+...+.....+.+. +++.+.... -.-+++. +........+.|.+.|+.|..+.
T Consensus 35 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~-~~~~~~~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 35 ISSFAHVE------GYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILL-YSRENDRIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHHHHT------TCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEES-CCBTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHc------CCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEe-CCCCChHHHHHHHHCCCCEEEEC
Confidence 45677888 998877655544433 333343322 1234443 33334467788888998775443
No 353
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=44.62 E-value=1.4e+02 Score=24.96 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=34.4
Q ss_pred hhHHHHHHHhhcccCCCceeecCCC--CcHHHH---HHHhccCCCCCCEEEEEcCCcC--hhHHHHHHHhCCCeeEEEe
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSK--ATGKIL---ASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~--~~~e~L---~~~l~~~~~~~~~vLi~rg~~~--~~~L~~~L~~~G~~v~~~~ 208 (301)
+-.+++++. |+.+.+.... .+.+.. ++.+..... .-|++ .+... .....+.+.+.|+.|..+.
T Consensus 24 gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~v--dgiii-~~~~~~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 24 GAKKAAEEL------KVDLQILAPPGANDVPKQVQFIESALATYP--SGIAT-TIPSDTAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHH------TCEEEEECCSSSCCHHHHHHHHHHHHHTCC--SEEEE-CCCCSSTTHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHh------CcEEEEECCCCcCCHHHHHHHHHHHHHcCC--CEEEE-eCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 345677778 9988765433 244433 333333221 22333 33322 3667778888898775543
No 354
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=44.59 E-value=90 Score=22.83 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEEC----hHHHHHHHHhhhc
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVAS----PSAVRSWVNLISD 249 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS----~sav~~~~~~l~~ 249 (301)
.+.+||++-.+.. +..+.+.|++.|+.|.. +. ..++.++. ...+|+|+.=- ..+.+ +++.++.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~mp~~~g~~-~~~~lr~ 82 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLC---VN------GAEQVLDAMAEEDYDAVIVDLHMPGMNGLD-MLKQLRV 82 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 3468999877654 56788888888865532 11 12223322 25789888741 12222 2333321
Q ss_pred ---ccCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 250 ---TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 250 ---~~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
......+++.++ +.....+.+.|... ++.+..+.+.|+++|.+.....
T Consensus 83 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 83 MQASGMRYTPVVVLSADVTPEAIRACEQAGARA-FLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp HHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHC---
T ss_pred chhccCCCCeEEEEeCCCCHHHHHHHHHcChhh-eeeCCCCHHHHHHHHHHHHHhh
Confidence 111245555553 34555667789865 6678889999999998876543
No 355
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=44.55 E-value=95 Score=23.09 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=62.9
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-CccEEEEeC----hHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITS----PEAGSVFLEAWK 122 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~d~IiftS----~~av~~f~~~l~ 122 (301)
.+++|||.-... ....+...|++.|+++. ... .+..+....+.+.. .+|.|++-- .++.+ +++.+.
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~-----~~~--~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-~~~~lr 106 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNII-----DTA--ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-CLSNIM 106 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEE-----EEE--SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-HHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EEE--CCHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-HHHHHH
Confidence 346899887654 44677888998987663 111 22233333443321 678887642 24444 455565
Q ss_pred HcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 123 EAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 123 ~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
+.. ++++++++.. .......+.+.. |.. +++....+.+.|...+...
T Consensus 107 ~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 107 EFD-KNARVIMISALGKEQLVKDCLIK---GAK-TFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HHC-TTCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHT
T ss_pred hhC-CCCcEEEEeccCcHHHHHHHHHc---CCC-EEEeCCCCHHHHHHHHHHH
Confidence 544 4566666543 333333332211 654 3566777888888777553
No 356
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=44.54 E-value=33 Score=29.12 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=29.9
Q ss_pred CCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEC
Q 022176 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (301)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS 236 (301)
...+...|.+.|+..|++|..+...+.. +..+.. .+.+.+||+|||..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~~--~~fp~~-~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTVQ--IAFPES-IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHHH--HCCCCS-HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccch--hhCCcC-hhHHhcCCEEEEeC
Confidence 3356678999999999888766432110 111110 12357899999985
No 357
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=44.51 E-value=17 Score=30.44 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhh
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 247 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l 247 (301)
.+.+.|++.|.+|..+.+++. .+.....+.+...|.|+|.+| ..++.|++.+
T Consensus 51 ~~~~~l~~~g~ev~~~dL~~~----~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v 109 (218)
T 3rpe_A 51 VAADFLRESGHQVKITTVDQG----YDIESEIENYLWADTIIYQMPAWWMGEPWILKKYIDEV 109 (218)
T ss_dssp HHHHHHHHTTCCEEEEEGGGC----CCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEEECCCc----cCHHHHHHHHHhCCEEEEECChHhccCCHHHHHHHHHH
Confidence 455667778999998888762 223334445678899999875 6788888765
No 358
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=44.24 E-value=12 Score=30.47 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCCchHHHHHHHHh---CCCcEEEeceeEeeeCC--C------------chHHHHHHhcCCCccEEEEeChH
Q 022176 57 RERGKNGKLIKALAK---HRIDCLELPLIQHAQGP--D------------TDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 57 R~~~~~~~l~~~L~~---~G~~v~~~P~~~~~~~~--d------------~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
|+...+..+++.+.+ .|.++..+-+.+....+ + .+.+....+++...|.|||.+|.
T Consensus 11 r~~s~t~~l~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 83 (196)
T 3lcm_A 11 NPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPI 83 (196)
T ss_dssp CTTSHHHHHHHHHHHHSCTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEEC
T ss_pred CCCChHHHHHHHHHHHhcCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECch
Confidence 333344666666654 58888877776543211 0 12344445556788999998873
No 359
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=44.20 E-value=18 Score=27.35 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCC-ccEEEEeChH----------HHHHHHHHHHHcCCCCceEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWIIITSPE----------AGSVFLEAWKEAGTPNVRIG 132 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~-~d~IiftS~~----------av~~f~~~l~~~~~~~~~i~ 132 (301)
.+++.+++.|+++..+.+-+.. ...+.. +|.|||-||. .++.|++.+....+.+.+++
T Consensus 20 ~i~~~l~~~g~~v~~~~~~~~~-----------~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~ 88 (147)
T 1f4p_A 20 TIARELADAGYEVDSRDAASVE-----------AGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVA 88 (147)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCC-----------STTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEE
T ss_pred HHHHHHHhcCCeeEEEehhhCC-----------HHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEE
Confidence 3444556668877554432221 113567 9999986543 34556665543345566666
Q ss_pred EEch
Q 022176 133 VVGA 136 (301)
Q Consensus 133 avG~ 136 (301)
++|-
T Consensus 89 v~~~ 92 (147)
T 1f4p_A 89 CFGC 92 (147)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6554
No 360
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=44.18 E-value=75 Score=27.15 Aligned_cols=75 Identities=8% Similarity=-0.055 Sum_probs=45.3
Q ss_pred CCCCCCeEEEeCCCC---chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~ 120 (301)
..+.|++||||-... =...+++.|.+.|++|+..- +... ..+.+.+.........++. +++..+++.+++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~--r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTY--QGDA--LKKRVEPLAEELGAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEE--CSHH--HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEc--CCHH--HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHH
Confidence 458899999998653 46789999999999876431 1110 0122222222223322221 4788899988887
Q ss_pred HHHc
Q 022176 121 WKEA 124 (301)
Q Consensus 121 l~~~ 124 (301)
+.+.
T Consensus 103 ~~~~ 106 (293)
T 3grk_A 103 LEKK 106 (293)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7553
No 361
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=44.17 E-value=76 Score=26.35 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=45.5
Q ss_pred CCCCCCeEEEeCCC--CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHH
Q 022176 46 ASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (301)
Q Consensus 46 ~~l~g~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~ 119 (301)
..+.|++||||-.. +=...+++.|.++|++|+.+-. . ....+.+.+.+.........+ +++..+++.+++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r---~-~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDY---H-ERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEES---C-HHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecC---C-HHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 35779999999874 4678999999999998764311 0 011122233332322222222 378889988887
Q ss_pred HHHH
Q 022176 120 AWKE 123 (301)
Q Consensus 120 ~l~~ 123 (301)
.+.+
T Consensus 94 ~~~~ 97 (266)
T 3o38_A 94 QTVE 97 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 362
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.17 E-value=81 Score=22.72 Aligned_cols=109 Identities=8% Similarity=0.064 Sum_probs=61.5
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l 121 (301)
+..+++||+.-... ....+...|++.|+++.. ..+.++..+.+. -..+|.|++- ..++.+ +++.+
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--------~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~-~~~~l 73 (142)
T 3cg4_A 4 AEHKGDVMIVDDDAHVRIAVKTILSDAGFHIIS--------ADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWD-TIRAI 73 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEE--------ESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEE--------eCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 34567899887654 456788889988875432 122233334442 3568888874 224544 55666
Q ss_pred HHc-CCCCceEEEEchhhH-H---HHHHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 122 KEA-GTPNVRIGVVGAGTA-S---IFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 122 ~~~-~~~~~~i~avG~~Ta-~---~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
.+. ...+++++++..... . .+.+. |.. ++...+.+.+.|...+.
T Consensus 74 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~i~ 122 (142)
T 3cg4_A 74 LDNSLEQGIAIVMLTAKNAPDAKMIGLQE------YVV-DYITKPFDNEDLIEKTT 122 (142)
T ss_dssp HHTTCCTTEEEEEEECTTCCCCSSTTGGG------GEE-EEEESSCCHHHHHHHHH
T ss_pred HhhcccCCCCEEEEECCCCHHHHHHHHhc------Ccc-EEEeCCCCHHHHHHHHH
Confidence 552 235788877755431 1 12223 443 35566677777776654
No 363
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=44.06 E-value=67 Score=27.90 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=23.1
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
+..+++||||-..+ -+..+++.|.+.|+++..+
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence 34567899998754 5568888998999887754
No 364
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=43.95 E-value=83 Score=22.27 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhcc
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
.+.+||++..+.. +..+.+.|++.|+.+.. +. ...+.++.+ ..+|.|++--. ...-.+++.++..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVL---AA------DGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEE---eC------CHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4578999988765 56788899999976532 11 122333333 46888887532 1122333444332
Q ss_pred cCCCceEEEECH----HHHHHHHHcCCCeeEecCCC-CHHHHHHHHHHHHH
Q 022176 251 EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALR 296 (301)
Q Consensus 251 ~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~p-s~e~ll~ai~~~~~ 296 (301)
. ...+++.++. .....+.+.|... ++.... +.+.|.+.+...+.
T Consensus 77 ~-~~~~ii~~t~~~~~~~~~~~~~~g~~~-~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 77 G-DQTPVLVISATENMADIAKALRLGVED-VLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp T-CCCCEEEEECCCCHHHHHHHHHHCCSE-EEESCC---CHHHHHHHHHHC
T ss_pred C-CCCCEEEEEcCCCHHHHHHHHHcCCCE-EEeCCCCcHHHHHHHHHHHhc
Confidence 2 2455555532 3334455678765 455555 78888888887764
No 365
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=43.92 E-value=25 Score=29.72 Aligned_cols=75 Identities=13% Similarity=0.024 Sum_probs=44.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-CccEEE--EeChHHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~d~Ii--ftS~~av~~f~~~l 121 (301)
..+.|++||||-... =+..+++.|.++|++|+.+-.- .....+.+.+.+...+ ...++. +++..+++.+++.+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS---NAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 668899999998765 3568999999999987643210 0001123333332222 222221 37788888888766
Q ss_pred HH
Q 022176 122 KE 123 (301)
Q Consensus 122 ~~ 123 (301)
.+
T Consensus 102 ~~ 103 (271)
T 4iin_A 102 VQ 103 (271)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 366
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.90 E-value=39 Score=27.79 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeC-CCC------chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHH
Q 022176 46 ASNSNPKVVVTR-ERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR-~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~ 118 (301)
..+.|++|++.- ... .-....+.|++.|+++..+.+.+ .+.+...+. +...|.|+++-.+... +.
T Consensus 23 ~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~---l~~ad~I~l~GG~~~~-l~ 94 (206)
T 3l4e_A 23 SNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTK---LRKNDFIYVTGGNTFF-LL 94 (206)
T ss_dssp CCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHH---HHHSSEEEECCSCHHH-HH
T ss_pred HHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHH---HHhCCEEEECCCCHHH-HH
Confidence 355688888643 221 23578889999999887665443 232333333 3568999998877775 56
Q ss_pred HHHHHcC
Q 022176 119 EAWKEAG 125 (301)
Q Consensus 119 ~~l~~~~ 125 (301)
+.|.+.+
T Consensus 95 ~~L~~~g 101 (206)
T 3l4e_A 95 QELKRTG 101 (206)
T ss_dssp HHHHHHT
T ss_pred HHHHHCC
Confidence 6676655
No 367
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=43.86 E-value=85 Score=22.34 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH---cCCCCEEEEE----ChHHHHHHHHhhhc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ---ALSIPVVAVA----SPSAVRSWVNLISD 249 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~I~ft----S~sav~~~~~~l~~ 249 (301)
+.+||++-.+.. +..+.+.|++.|+.. ++.. . ...+.+.. ...+|+|+.- ...+. .+++.++.
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~----v~~~---~-~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~-~~~~~lr~ 75 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYED----VLEA---E-HGVEAWEKLDANADTKVLITDWNMPEMNGL-DLVKKVRS 75 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCC----EEEE---S-SHHHHHHHHHHCTTCCEEEECSCCSSSCHH-HHHHHHHT
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcE----EEEe---C-CHHHHHHHHHhCCCCCEEEEeCCCCCCCHH-HHHHHHHh
Confidence 357888877654 567888899888642 1111 1 11222221 2367877752 11222 34444443
Q ss_pred cc-CCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 250 TE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 250 ~~-~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
.. ..+++++.++ +.....+.+.|... ++.+..+.+.|.+.|...+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 76 DSRFKEIPIIMITAEGGKAEVITALKAGVNN-YIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp STTCTTCCEEEEESCCSHHHHHHHHHHTCCE-EEESCCCHHHHHHHHHHHHCC
T ss_pred cCCCCCCeEEEEeCCCChHHHHHHHHcCccE-EEeCCCCHHHHHHHHHHHhcc
Confidence 22 2356666654 33445566778765 667888999999999887754
No 368
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=43.86 E-value=1.2e+02 Score=24.11 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEece-----------eEeeeC--CCchHHHHHHhcCCCccEEEEeCh
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
+|+||||-..+ -+..+++.|.+.|++|..+-- +++... .|.+.+.+.+ .+.|.||....
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC---KGADAVISAFN 76 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHH---TTCSEEEECCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHh---cCCCEEEEeCc
Confidence 57999998654 456889999999988876532 222222 2334555554 46899988753
No 369
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=43.81 E-value=22 Score=31.31 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=41.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+......+...++..|+++..+|+-. ....|.+.+++.+++-.+...|++++++
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 144 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NEAIDPQAVADMLKAHPEITVVSVCHHD 144 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CCCCCHHHHHHHHhcCCCCcEEEEeccC
Confidence 46789998876544345556667899999888632 1123556777777433456788888876
No 370
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=43.76 E-value=71 Score=28.06 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=81.0
Q ss_pred HHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChHH------HHHHHHHHHHc-CCCCceEEEEc
Q 022176 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA------GSVFLEAWKEA-GTPNVRIGVVG 135 (301)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~a------v~~f~~~l~~~-~~~~~~i~avG 135 (301)
.+.+++.|++...+-+=+. ...+++.+.+ +.....|.|++--|-- -+..++.+... ..|++.
T Consensus 57 ~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~h----- 128 (301)
T 1a4i_A 57 LKAAEEIGIKATHIKLPRT---TTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLT----- 128 (301)
T ss_dssp HHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCS-----
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCC-----
Confidence 3457778988875533111 1123444444 3457888988765431 12222222111 122332
Q ss_pred hhhHHHHHHHhhcccCCC-ceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeee
Q 022176 136 AGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYT 211 (301)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~-~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~ 211 (301)
+.-...|- . |- ...|.| -|++++++.|.... ..+++++++.... -...+...|...|++|+.+.-.
T Consensus 129 p~N~G~l~-~------g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~- 198 (301)
T 1a4i_A 129 SINAGRLA-R------GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK- 198 (301)
T ss_dssp HHHHHHHH-T------TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-
T ss_pred hhhHHHHh-c------CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-
Confidence 21111221 1 32 122444 37888887776654 3688998887774 4677899999999988765311
Q ss_pred eeeCCCCcHHHHHHcCCCCEEEEEChH
Q 022176 212 TEPVHHVDQTVLKQALSIPVVAVASPS 238 (301)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~I~ftS~s 238 (301)
. ..+.+.+.+.|+|+-+.+.
T Consensus 199 ----t---~~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 199 ----T---AHLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp ----C---SSHHHHHTTCSEEEECCCC
T ss_pred ----c---ccHHHHhccCCEEEECCCC
Confidence 1 1233345788988887766
No 371
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=43.51 E-value=90 Score=26.71 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=79.4
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCC-CcHHHHHHHhccCCCCC
Q 022176 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (301)
Q Consensus 101 ~~~d~Iift-S~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~-~~~e~L~~~l~~~~~~~ 178 (301)
++.|.||-. +........+.+.+. +++++..+.. . +... .. ..-..+.+.. ..+..+++.|.+. ..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 135 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPE---RA-KWSVVMPQPIPIMGKVLYEHMKKN--NV 135 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTT---TT-TTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccC---CC-CcEEecCCChHHHHHHHHHHHHhc--CC
Confidence 478898864 344444555555553 5666666543 1 1111 00 1111122322 2345566666654 34
Q ss_pred CEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC-hHHHHHHHHhhhcc
Q 022176 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (301)
Q Consensus 179 ~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS-~sav~~~~~~l~~~ 250 (301)
++|.++..+.. .+.+.+.|++.|.++.....|... ..+....+..+ .++|+|++.+ ...+-.+++.+.+.
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~ 213 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRER 213 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78887754432 345778899999987655555432 11222222222 4789998888 77777788877765
Q ss_pred cCCCceEEEE
Q 022176 251 EQWSNSVACI 260 (301)
Q Consensus 251 ~~~~~~i~aI 260 (301)
+. +.+++.+
T Consensus 214 g~-~~p~i~~ 222 (362)
T 3snr_A 214 GY-NGLIYQT 222 (362)
T ss_dssp TC-CSEEEEC
T ss_pred CC-CccEEec
Confidence 43 4555543
No 372
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=43.47 E-value=96 Score=22.84 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEECh---HHHHHHHHhhhcc
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
...+||++-.+.. +..+.+.|++.|+.|.. +. ...+.++. ...+|+|++--. ...-.+++.++..
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 83 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHF---AR------DATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQ 83 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEE---EC------CHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhH
Confidence 3468999988765 56788899988865432 11 11222222 257898887421 1122233333332
Q ss_pred cCCCceEEEECH----HHHHHHHHcC-CCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 251 EQWSNSVACIGE----TTASAAKRLG-LKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 251 ~~~~~~i~aIG~----~Ta~al~~~G-~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
..+++++.+.. .....+.+.| ... ++....+.+.|.+.|...++.
T Consensus 84 -~~~~~ii~~s~~~~~~~~~~~~~~g~~~~-~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 84 -YPSTTRILLTGDPDLKLIAKAINEGEIYR-YLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp -CTTSEEEEECCCCCHHHHHHHHHTTCCSE-EECSSCCHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEECCCCHHHHHHHHhCCCcce-EEeCCCCHHHHHHHHHHHHHH
Confidence 12566666643 3344455667 654 667878999999999887653
No 373
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=43.31 E-value=13 Score=30.26 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=34.0
Q ss_pred hCCCeeEEEeeeeeeeCC----------------CCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhh
Q 022176 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (301)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~----------------~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~ 248 (301)
+.|.+|..+.+|+....+ +......+.+...|.|+|.+| ..+++|++.+-
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHHHHHHHHc
Confidence 468899988888764211 111234445678899999875 78999999873
No 374
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=43.29 E-value=64 Score=27.30 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=50.5
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-C
Q 022176 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (301)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~ 102 (301)
.++++.+.-++.... ......+.|+++|||-... =+..+++.|.+.|++|+.+-. .....+.+.+.+...+ .
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~ 83 (275)
T 4imr_A 10 GVDLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGV----KPGSTAAVQQRIIASGGT 83 (275)
T ss_dssp --------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----STTTTHHHHHHHHHTTCC
T ss_pred ccCcccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhcCCe
Confidence 445555555554411 1122458899999998764 457899999999998764321 1122233333342322 2
Q ss_pred ccEEE--EeChHHHHHHHHHHHHcC
Q 022176 103 FDWII--ITSPEAGSVFLEAWKEAG 125 (301)
Q Consensus 103 ~d~Ii--ftS~~av~~f~~~l~~~~ 125 (301)
...+. +++...++.+++.+.+.+
T Consensus 84 ~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 84 AQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp EEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred EEEEEecCCCHHHHHHHHHHHHHhC
Confidence 22221 467888888888776553
No 375
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=43.23 E-value=93 Score=22.61 Aligned_cols=114 Identities=10% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCC-CcEEEeceeEeeeCCCchHHHHHHhcC-CCccEEEEeC----hHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITS----PEAGSVFL 118 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G-~~v~~~P~~~~~~~~d~~~l~~~l~~l-~~~d~IiftS----~~av~~f~ 118 (301)
....+.+|||.-... ....+...|++.| +++.... ...+.+.... +- ..+|.|++-- .++.+ ++
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~-~~~~~~dlvi~D~~l~~~~g~~-~~ 86 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRT-DGLDAFDILMIDGAALDTAELA-AI 86 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCH-HHHTTCSEEEEECTTCCHHHHH-HH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHH-hcCCCCCEEEEeCCCCCccHHH-HH
Confidence 445578899987654 4467888898888 7655321 1111222111 22 5789888743 34554 45
Q ss_pred HHHHHcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 119 EAWKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
+.+.+.. ++++++++.. .......+.+. .|.. +++..+.+.+.|...+..
T Consensus 87 ~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~---~ga~-~~l~Kp~~~~~L~~~i~~ 137 (146)
T 4dad_A 87 EKLSRLH-PGLTCLLVTTDASSQTLLDAMR---AGVR-DVLRWPLEPRALDDALKR 137 (146)
T ss_dssp HHHHHHC-TTCEEEEEESCCCHHHHHHHHT---TTEE-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHhC-CCCcEEEEeCCCCHHHHHHHHH---hCCc-eeEcCCCCHHHHHHHHHH
Confidence 5565543 4677766654 33333333321 1543 456677788888777653
No 376
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=43.14 E-value=1.1e+02 Score=23.53 Aligned_cols=112 Identities=15% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l 121 (301)
+..+++|||.-... ....+...|++.|+++.. ..+..+..+.+ .-..+|.|+.- ..++.+ +++.+
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--------~~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~-~~~~l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQ--------AHNKDEALKLA-GAEKFEFITVXLHLGNDSGLS-LIAPL 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEE--------ECSHHHHHHHH-TTSCCSEEEECSEETTEESHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEE--------eCCHHHHHHHH-hhCCCCEEEEeccCCCccHHH-HHHHH
Confidence 34567899987654 345777888888875432 12333333444 33568888763 234555 44555
Q ss_pred HHcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 122 KEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 122 ~~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.+.. ++++++++.. .......+.+.. |.. +++..+.+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~lt~~~~~~~~~~a~~~---Ga~-~~l~KP~~~~~L~~~i~~ 121 (184)
T 3rqi_A 74 CDLQ-PDARILVLTGYASIATAVQAVKD---GAD-NYLAKPANVESILAALQT 121 (184)
T ss_dssp HHHC-TTCEEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHTST
T ss_pred HhcC-CCCCEEEEeCCCCHHHHHHHHHh---CHH-HheeCCCCHHHHHHHHHH
Confidence 5543 4667766543 333333222111 654 366677888899888764
No 377
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=43.02 E-value=91 Score=27.11 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=42.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEee--eCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
.|.+|++..+.- ..+...++..|+++..+|+-.-. ...|.+.+++.+.+ .+...|+++++
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p 169 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNP 169 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESS
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECC
Confidence 577899988764 34667788899999999985211 11356777777732 46778888887
No 378
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=42.96 E-value=91 Score=22.41 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (301)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~l~~ 123 (301)
.+++||+.-... ....+...|++.|+++..+ .+..+..+.+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 74 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVS-LIRALRR 74 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 357899887654 4567788899999775322 233333344433 5689888742 34544 4555654
Q ss_pred c-CCCCceEEEEchhhHHHH-H-HHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 124 A-GTPNVRIGVVGAGTASIF-E-EVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 124 ~-~~~~~~i~avG~~Ta~~L-~-~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
. ...+++++++........ . +.+ ..|.. ++...+.+.+.|...+..
T Consensus 75 ~~~~~~~~ii~~s~~~~~~~~~~~~~---~~g~~-~~l~kP~~~~~l~~~i~~ 123 (140)
T 3grc_A 75 DSRTRDLAIVVVSANAREGELEFNSQ---PLAVS-TWLEKPIDENLLILSLHR 123 (140)
T ss_dssp SGGGTTCEEEEECTTHHHHHHHHCCT---TTCCC-EEECSSCCHHHHHHHHHH
T ss_pred CcccCCCCEEEEecCCChHHHHHHhh---hcCCC-EEEeCCCCHHHHHHHHHH
Confidence 2 235788888776544332 2 221 11443 356677788888777653
No 379
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=42.92 E-value=66 Score=26.83 Aligned_cols=74 Identities=9% Similarity=-0.021 Sum_probs=44.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCC-chHHHHHHhcCC-CccEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADT-IFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d-~~~l~~~l~~l~-~~d~Ii--ftS~~av~~f~~~ 120 (301)
..+.|+++|||-... =+..+++.|.++|++|+..- ....+ .+...+.+...+ ....+. +++..+++.+++.
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTY----NGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISA 79 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc----CCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 457899999998765 35789999999999876431 11111 122223332222 122221 4788888888877
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 80 ~~~ 82 (259)
T 3edm_A 80 AAD 82 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 380
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=42.78 E-value=92 Score=26.62 Aligned_cols=87 Identities=15% Similarity=-0.003 Sum_probs=49.1
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC-hHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWK 122 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS-~~av~~f~~~l~ 122 (301)
..++|.+..+.. ....+.+.|+++|+++.....+... ..+.......+.. .+.|.|++.+ ...+..+++.+.
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 211 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLVA-ANPDAILVGASGTAAALPQTTLR 211 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHHH-HCCSEEEEECCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 446777664332 2355677888999886643333221 1233333233322 4678888877 666666788888
Q ss_pred HcCCCCceEEE-Echhh
Q 022176 123 EAGTPNVRIGV-VGAGT 138 (301)
Q Consensus 123 ~~~~~~~~i~a-vG~~T 138 (301)
+.++. .+++. +|-..
T Consensus 212 ~~g~~-~p~i~~~g~~~ 227 (362)
T 3snr_A 212 ERGYN-GLIYQTHGAAS 227 (362)
T ss_dssp HTTCC-SEEEECGGGCS
T ss_pred HcCCC-ccEEeccCcCc
Confidence 87764 34433 34333
No 381
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=42.77 E-value=87 Score=22.14 Aligned_cols=109 Identities=9% Similarity=0.088 Sum_probs=62.0
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC-----hHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS-----~~av~~f~~~l 121 (301)
..+++||+.-... ....+...|+..|+++..+ .+..+....+.....+|.|++-- .++.+ +++.+
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-~~~~l 73 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAV--------SSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-VARVA 73 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-HHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-HHHHH
Confidence 4567899887654 3457788888888865421 12233334443323789888641 34554 45566
Q ss_pred HHcCCCCceEEEEchhh-HHHHHHHhhcccCCCce-eecCCCCcHHHHHHHhcc
Q 022176 122 KEAGTPNVRIGVVGAGT-ASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPK 173 (301)
Q Consensus 122 ~~~~~~~~~i~avG~~T-a~~L~~~~~~~~~G~~~-~~~p~~~~~e~L~~~l~~ 173 (301)
.+.. ++++++++.... .....+. +.. ++...+.+.+.|...+.+
T Consensus 74 ~~~~-~~~~ii~~s~~~~~~~~~~~-------~~~~~~l~kP~~~~~l~~~i~~ 119 (132)
T 2rdm_A 74 REID-PNMPIVYISGHAALEWASNG-------VPDSIILEKPFTSAQLITAVSQ 119 (132)
T ss_dssp HHHC-TTCCEEEEESSCCTTHHHHS-------CTTCEEEESSCCHHHHHHHHHH
T ss_pred HhcC-CCCCEEEEeCCccHHHHHhh-------cCCcceEeCCCCHHHHHHHHHH
Confidence 5543 467776665433 3333322 211 355666778888776643
No 382
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=42.71 E-value=27 Score=31.20 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHHHHHHHHHcCCCCceEEEEc
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-------av~~f~~~l~~~~~~~~~i~avG 135 (301)
+.+++.|.+.|+++..+.+ .. .+...+ ...+..+|.|+|-||. .++.|++.+....+.+.+++++|
T Consensus 270 ~~ia~~l~~~g~~v~~~~~---~~-~~~~~~---~~~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 270 HALMDGLVAGGCEVKLFKL---SV-SDRNDV---IKEILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHHTTCEEEEEEG---GG-SCHHHH---HHHHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEEC---CC-CCHHHH---HHHHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 3444556667776654332 21 122222 2334679999999863 57888887765555677777776
No 383
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=42.54 E-value=39 Score=32.17 Aligned_cols=141 Identities=10% Similarity=-0.024 Sum_probs=79.0
Q ss_pred chHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTP 127 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~-~~~ 127 (301)
+..++...|++.|+++..+|=+. .-+. + ..+++ +.++...+.-+..++.......+.+++. +.+
T Consensus 236 D~~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~g-g-tt~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP 312 (523)
T 3u7q_B 236 NFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAG-G-TTQEE-MKDAPNALNTVLLQPWHLEKTKKFVEGTWKHE 312 (523)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCC-C-BCHHH-HHHGGGSSEEEESSGGGCHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHcCCeEEEecCchhcccccccccccccCC-C-CCHHH-HHHhhcCcEEEEEccchHHHHHHHHHHHhCCC
Confidence 34699999999999999876321 1111 1 12222 3356667777777776555556666553 333
Q ss_pred CceE-EEEch-hhHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccC--CCCCCEEEEEcCCcChhHHHHHHHhCC
Q 022176 128 NVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (301)
Q Consensus 128 ~~~i-~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~--~~~~~~vLi~rg~~~~~~L~~~L~~~G 201 (301)
-+.+ .-+|. .|.+.|++..+ ..|..+ |+... -..+.+.+... ...|+|+++..+..-.-.|...|.+.|
T Consensus 313 ~i~~~~PiG~~~T~~~l~~la~--~~g~~~---~~~i~~er~r~~~~l~d~~~~l~GKrvaI~gd~~~~~~la~fL~elG 387 (523)
T 3u7q_B 313 VPKLNIPMGLDWTDEFLMKVSE--ISGQPI---PASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELG 387 (523)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHH--HHCCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred eeecCCcCCHHHHHHHHHHHHH--HHCCCh---hHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHcC
Confidence 3221 23565 57777766521 114432 21100 11133333221 126789999855444556889999999
Q ss_pred CeeEEEee
Q 022176 202 FEVVRLNT 209 (301)
Q Consensus 202 ~~v~~~~v 209 (301)
.+|..+.+
T Consensus 388 m~vv~v~~ 395 (523)
T 3u7q_B 388 CEPVHILC 395 (523)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 98766544
No 384
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=42.36 E-value=75 Score=27.67 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=82.7
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChH--HH--HHHHHHHHHc-CCCCceEEEEch
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLEAWKEA-GTPNVRIGVVGA 136 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~--av--~~f~~~l~~~-~~~~~~i~avG~ 136 (301)
-.+.+++.|++...+.+-... ..++|...+ ......|.|++.-|- .+ +..++.+... ..+++. +
T Consensus 54 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~-----~ 125 (285)
T 3p2o_A 54 KAKACEECGIKSLVYHLNENI---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH-----P 125 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCC-----H
Confidence 345677889988765542211 123454444 345689999988872 11 2233333211 122322 2
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-...+.| -|+.+.++.|.... ..|++++++...+ ....+...|.+.|++|+.+.-+
T Consensus 126 ~N~g~l~-~------g~~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--- 193 (285)
T 3p2o_A 126 INVGYLN-L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--- 193 (285)
T ss_dssp HHHHHHH-T------TCCSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---
T ss_pred hhhhhhh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---
Confidence 2212221 1 32111333 46777777776553 3788998888544 5778999999999988655422
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.. .+.+...+.|+|+-+.+
T Consensus 194 --t~---~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 194 --TK---DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp --CS---CHHHHHTTCSEEEECSS
T ss_pred --ch---hHHHHhhcCCEEEECCC
Confidence 11 12233578899988876
No 385
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=42.20 E-value=39 Score=31.59 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCEEEEEc-CCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH-HHHHHhhhcccCCCc
Q 022176 178 KCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV-RSWVNLISDTEQWSN 255 (301)
Q Consensus 178 ~~~vLi~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav-~~~~~~l~~~~~~~~ 255 (301)
+-++++++ .....+.|.+..++.|.....+...-.+ ..+++...+...|+++++|..+. ...++.+. .++
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~----~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma----~G~ 477 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKL----PHPQYLARYRHADLFLDTHPYNAHTTASDALW----TGC 477 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCC----CHHHHHHHGGGCSEEECCSSSCCSHHHHHHHH----TTC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCC----CHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHh----CCC
Confidence 45677766 3334567777888887641122222111 11234444567899999984300 01222221 256
Q ss_pred eEEE------ECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 256 SVAC------IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 256 ~i~a------IG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
++++ .+...+..+...|+...+ .+ +.+++.++|.+.+.++
T Consensus 478 Pvv~~~g~~~~s~~~~~~l~~~g~~e~v-~~--~~~~la~~i~~l~~~~ 523 (568)
T 2vsy_A 478 PVLTTPGETFAARVAGSLNHHLGLDEMN-VA--DDAAFVAKAVALASDP 523 (568)
T ss_dssp CEEBCCCSSGGGSHHHHHHHHHTCGGGB-CS--SHHHHHHHHHHHHHCH
T ss_pred CEEeccCCCchHHHHHHHHHHCCChhhh-cC--CHHHHHHHHHHHhcCH
Confidence 7765 144556677778886533 33 8899999998877543
No 386
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=35 Score=25.33 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCC--chHHHHHHHHhCCCcEE
Q 022176 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (301)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l~~~L~~~G~~v~ 77 (301)
.++.|++|++|-.-. ..+++.+.++++|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 578999999997763 56889999999998875
No 387
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=41.95 E-value=1.7e+02 Score=25.16 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=112.4
Q ss_pred CCeEEEeCC-CCchHHHHHHHHhCCCcEEEeceeE-----ee-eCCCchHHHHHHhcCCCccEEE-EeChHHHHHHHHHH
Q 022176 50 NPKVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQ-----HA-QGPDTDRLSSVLNADTIFDWII-ITSPEAGSVFLEAW 121 (301)
Q Consensus 50 g~~IlitR~-~~~~~~l~~~L~~~G~~v~~~P~~~-----~~-~~~d~~~l~~~l~~l~~~d~Ii-ftS~~av~~f~~~l 121 (301)
..+|+|.-- ........+.+.+.|++++ .|+-. .. ..+-+..+.+.+.+ ...|.++ ||.+..+......+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~~~G~~vy~sl~el~~~-~~~D~viI~tP~~~~~~~~~ea 84 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAVAA-TGATASVIYVPAPFCKDSILEA 84 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHH-HCCCEEEECCCGGGHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccceeCCeeccCCHHHHhhc-CCCCEEEEecCHHHHHHHHHHH
Confidence 457888765 3345567777777887733 22211 00 00112334444422 2466655 66666666666666
Q ss_pred HHcCCCCceEEEE---chhh------HHHHHHHhhcccCCCceeecCCCC---cH-HHHHHHhccCCCCCCEEEEEcCCc
Q 022176 122 KEAGTPNVRIGVV---GAGT------ASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPASAK 188 (301)
Q Consensus 122 ~~~~~~~~~i~av---G~~T------a~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~l~~~~~~~~~vLi~rg~~ 188 (301)
.+.+ ++.+++ |-.. .+.+++. |+.. +.|... +. ..+.-.++....+.++|-++.-.+
T Consensus 85 ~~~G---i~~iVi~t~G~~~~~~~~l~~~A~~~------gv~l-iGPNc~Gi~~p~~~~~~~~~~~~~~~G~i~~vsqSG 154 (288)
T 2nu8_A 85 IDAG---IKLIITITEGIPTLDMLTVKVKLDEA------GVRM-IGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSG 154 (288)
T ss_dssp HHTT---CSEEEECCCCCCHHHHHHHHHHHHHH------TCEE-ECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCH
T ss_pred HHCC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EecCCcceecCCcceeEecccCCCCCCCEEEEECcH
Confidence 6644 455443 3222 2233444 7654 334320 11 111111222222346777665433
Q ss_pred C-hhHHHHHHHhCCCeeEEEeeeeeeeC-CCCcHHHHHHc---CCCCEEEEEChH------HHHHHHHhhhcccCCCceE
Q 022176 189 A-SNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASPS------AVRSWVNLISDTEQWSNSV 257 (301)
Q Consensus 189 ~-~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~I~ftS~s------av~~~~~~l~~~~~~~~~i 257 (301)
. ...+.+.+..+|.-+..+.-.-.... .....++++.+ .+-++|++..-. -++.|++. ... +.+.+
T Consensus 155 ~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~~~~~~-~~~--KPVv~ 231 (288)
T 2nu8_A 155 TLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKE-HVT--KPVVG 231 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHH-HCC--SCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHh-cCC--CCEEE
Confidence 2 35677778888988877776665442 22223444433 355677776542 34556554 211 12222
Q ss_pred EEECHHH-----------------------HHHHHHcCCCeeEecCCCCHHHHHHHHHHHH
Q 022176 258 ACIGETT-----------------------ASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 295 (301)
Q Consensus 258 ~aIG~~T-----------------------a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~ 295 (301)
+..|.+. ..++++.|+.+ . .+.++|.+.+++.+
T Consensus 232 ~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~---~--~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 232 YIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKT---V--RSLADIGEALKTVL 287 (288)
T ss_dssp EEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEE---C--SSGGGHHHHHHHHC
T ss_pred EEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeE---e--CCHHHHHHHHHHHh
Confidence 2233322 34577788643 2 36778888877654
No 388
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=41.94 E-value=36 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=26.6
Q ss_pred CCCCCCCeEEEeC-CCCchHHHHHHHHhCCCcEE
Q 022176 45 SASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (301)
Q Consensus 45 ~~~l~g~~IlitR-~~~~~~~l~~~L~~~G~~v~ 77 (301)
+..+.|.+|.++. .......+.+.++.+|+.+.
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 4678899999986 34467789999999999976
No 389
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=41.75 E-value=1.9e+02 Score=25.69 Aligned_cols=123 Identities=11% Similarity=0.025 Sum_probs=63.2
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCE
Q 022176 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (301)
Q Consensus 101 ~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~ 180 (301)
.++|.||.+|..-.+.+.+...+ .++++++.++... ..- .+..... ..+.+.-|+-.+.....+.++
T Consensus 85 ~g~d~Ii~~g~~~~~~~~~vA~~--~Pdv~fv~id~~~----~~~------Nv~sv~~-~~~eg~ylaG~~A~~~tk~~k 151 (356)
T 3s99_A 85 AGNKLIFTTSFGYMDPTVKVAKK--FPDVKFEHATGYK----TAD------NMSAYNA-RFYEGRYVQGVIAAKMSKKGI 151 (356)
T ss_dssp TTCSEEEECSGGGHHHHHHHHTT--CTTSEEEEESCCC----CBT------TEEEEEE-CHHHHHHHHHHHHHHHCSSCE
T ss_pred CCCCEEEECCHHHHHHHHHHHHH--CCCCEEEEEeccc----cCC------cEEEEEe-chhHHHHHHHHHHHHhcCCCE
Confidence 67999988887766655544432 3578888886432 111 3322221 222222222222111113479
Q ss_pred EEEEcCCcCh------hHHHHHHHhCCCeeEEEeeeeeeeCCCCcH-HHHHHc--CCCCEEEEEC
Q 022176 181 VLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ-TVLKQA--LSIPVVAVAS 236 (301)
Q Consensus 181 vLi~rg~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-~~~~~~--~~~d~I~ftS 236 (301)
|.++.|.... .-+.+.++..+-++.....|.....+.... ++.+.+ ..+|+|.-.+
T Consensus 152 IGfVgg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~ 216 (356)
T 3s99_A 152 AGYIGSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHT 216 (356)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred EEEECCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECC
Confidence 9999987542 235677777777766666665322221111 122222 4688665544
No 390
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=41.49 E-value=1.1e+02 Score=22.87 Aligned_cols=120 Identities=11% Similarity=0.009 Sum_probs=66.0
Q ss_pred cHHHHHHHhccCCC-CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHH-
Q 022176 163 TGKILASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV- 240 (301)
Q Consensus 163 ~~e~L~~~l~~~~~-~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav- 240 (301)
..+.+++.+..... .+-+++++......+.+.+..++.|..+ .. ...+ .+++.+.+...|+++++|...-
T Consensus 16 g~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v---~~-g~~~----~~~~~~~~~~adv~v~ps~~e~~ 87 (166)
T 3qhp_A 16 NQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKA---EF-GFVN----SNELLEILKTCTLYVHAANVESE 87 (166)
T ss_dssp THHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEE---EC-CCCC----HHHHHHHHTTCSEEEECCCSCCC
T ss_pred CHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeE---EE-eecC----HHHHHHHHHhCCEEEECCcccCc
Confidence 34556666655422 2346666665555677888888887622 22 2221 2344444678999999883100
Q ss_pred -HHHHHhhhcccCCCc-eEEEE--CHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 241 -RSWVNLISDTEQWSN-SVACI--GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 241 -~~~~~~l~~~~~~~~-~i~aI--G~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
..+++.+. .++ ++++. +....+.+.+.|. ++ ...+.+++.++|.+.+.++
T Consensus 88 ~~~~~Eama----~G~vPvi~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 88 AIACLEAIS----VGIVPVIANSPLSATRQFALDERS---LF-EPNNAKDLSAKIDWWLENK 141 (166)
T ss_dssp CHHHHHHHH----TTCCEEEECCTTCGGGGGCSSGGG---EE-CTTCHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHh----cCCCcEEeeCCCCchhhhccCCce---EE-cCCCHHHHHHHHHHHHhCH
Confidence 01222221 255 78772 2223333333332 32 3458999999999887643
No 391
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=41.42 E-value=18 Score=31.15 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=20.9
Q ss_pred CCeEEEeCCC----CchHHHH----HHHHhCCCcEEEeceeEe
Q 022176 50 NPKVVVTRER----GKNGKLI----KALAKHRIDCLELPLIQH 84 (301)
Q Consensus 50 g~~IlitR~~----~~~~~l~----~~L~~~G~~v~~~P~~~~ 84 (301)
+|+||+.-.. ..+..++ +.+++.|.+|..+-+++.
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 4577765332 2234444 446678988888777654
No 392
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=41.27 E-value=79 Score=29.93 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022176 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (301)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~-~f~~~l~~~~~~~ 128 (301)
+++||++.+.. +...+.|++. +++...+ ..+.+++. +.+.++|.++..|..-+. .+++ . .++
T Consensus 4 ~~~vl~~~~~~--~~~~~~l~~~-~~v~~~~------~~~~~~~~---~~~~~~d~li~~~~~~~~~~~l~---~--~~~ 66 (529)
T 1ygy_A 4 LPVVLIADKLA--PSTVAALGDQ-VEVRWVD------GPDRDKLL---AAVPEADALLVRSATTVDAEVLA---A--APK 66 (529)
T ss_dssp CCEEEECSSCC--GGGGTTSCSS-SEEEECC------TTSHHHHH---HHGGGCSEEEECSSSCBCHHHHH---T--CTT
T ss_pred CcEEEEeCCCC--HHHHHHHhcC-ceEEEcC------CCCHHHHH---HHhcCCEEEEEcCCCCCCHHHHh---h--CCC
Confidence 46899987643 2223445443 4544332 12223333 345789999887654332 2222 2 245
Q ss_pred ceEEEE---chh--hHHHHHHHhhcccCCCceeecCCCCcHHHHHH----H-h--c-------------cC--------C
Q 022176 129 VRIGVV---GAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILAS----E-L--P-------------KN--------G 175 (301)
Q Consensus 129 ~~i~av---G~~--Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~----~-l--~-------------~~--------~ 175 (301)
+|+++. |-. -.+++.+. |+.+.-.|.. ++...++ . | . +| .
T Consensus 67 Lk~i~~~~~G~d~id~~~~~~~------gi~v~n~p~~-~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~ 139 (529)
T 1ygy_A 67 LKIVARAGVGLDNVDVDAATAR------GVLVVNAPTS-NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE 139 (529)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTTS-SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCC
T ss_pred CcEEEECCcCcCccCHhHHHhC------CeEEEECCCc-chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccc
Confidence 665552 221 23566777 9988666643 3322211 1 1 1 01 1
Q ss_pred CCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeee
Q 022176 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 176 ~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
..++++.++.-..-...++..|++.|.+| .+|++
T Consensus 140 l~g~~vgIIG~G~IG~~vA~~l~~~G~~V---~~~d~ 173 (529)
T 1ygy_A 140 IFGKTVGVVGLGRIGQLVAQRIAAFGAYV---VAYDP 173 (529)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECT
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEECC
Confidence 35789999988888889999999999865 45543
No 393
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=41.20 E-value=15 Score=30.07 Aligned_cols=43 Identities=14% Similarity=-0.033 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.+.+.+++.|.++..+-+.+ ..| +....+++...|.|||.+|.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d---~~~~~~~l~~AD~iV~~~P~ 80 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYD---VKAEVQNFLWADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCC---HHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeCCc---ccc---HHHHHHHHHhCCEEEEECCc
Confidence 34445566688888777653 223 33444456789999999964
No 394
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=41.17 E-value=52 Score=27.95 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe--------ChHHHHHHHHHHHHcCCCCceEEEE
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT--------SPEAGSVFLEAWKEAGTPNVRIGVV 134 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift--------S~~av~~f~~~l~~~~~~~~~i~av 134 (301)
..+++.|++.|++|...-+-+.....+ .+ .+.+||.|||- +...++.|.+++.. +..++++
T Consensus 35 ~~i~~~L~~~gf~V~~~t~dd~~~~~~----~~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgi 103 (252)
T 1t0b_A 35 TVIASYLAEAGFDAATAVLDEPEHGLT----DE---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVL 103 (252)
T ss_dssp HHHHHHHHHTTCEEEEEESSSGGGGCC----HH---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEE
T ss_pred HHHHHHHhhCCcEEEEEeccCccccCC----Hh---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEE
Confidence 355888999998887643211111111 11 35789999993 35556666665542 5666776
Q ss_pred chh
Q 022176 135 GAG 137 (301)
Q Consensus 135 G~~ 137 (301)
..+
T Consensus 104 H~a 106 (252)
T 1t0b_A 104 HSG 106 (252)
T ss_dssp GGG
T ss_pred ccc
Confidence 554
No 395
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=41.14 E-value=34 Score=27.14 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHhCC--CeeEEEeeeeeeeCCCC---------------c---------HHHHHHcCCCCEEEEECh-------H
Q 022176 192 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 238 (301)
Q Consensus 192 ~L~~~L~~~G--~~v~~~~vY~~~~~~~~---------------~---------~~~~~~~~~~d~I~ftS~-------s 238 (301)
.+.+.|++.| ++|..+.+|+...+... . ..+.+.+...|.|+|.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4556677765 88888888765221110 0 112334568999999994 6
Q ss_pred HHHHHHHhhh
Q 022176 239 AVRSWVNLIS 248 (301)
Q Consensus 239 av~~~~~~l~ 248 (301)
.++.|++.+.
T Consensus 104 ~lK~~iD~~~ 113 (201)
T 1t5b_A 104 QLKNYFDLIA 113 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhe
Confidence 8899999876
No 396
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=40.99 E-value=45 Score=24.73 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=27.4
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEE
Q 022176 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~ 77 (301)
..++.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 4679999999997654 46789999999999876
No 397
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=40.99 E-value=59 Score=27.63 Aligned_cols=117 Identities=13% Similarity=-0.032 Sum_probs=66.5
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHH
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~ 144 (301)
-.+.+++.|.+..+.++ ++. ..+....-+.+. ..+++.+.+|-|.=... ++++.+. + ...+.
T Consensus 20 h~~~~~~~g~~~~y~~~-~~~-~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~-~~~ld~~-------------~-~~A~~ 81 (271)
T 1nyt_A 20 HQQFAQQLNIEHPYGRV-LAP-INDFINTLNAFF-SAGGKGANVTVPFKEEA-FARADEL-------------T-ERAAL 81 (271)
T ss_dssp HHHHHHHHTCCCCEEEE-ECC-TTCHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE-------------C-HHHHH
T ss_pred HHHHHHHCCCCcEEEEE-EcC-HHHHHHHHHHHH-hCCCCeEEEccCCHHHH-HHHHhhc-------------C-HHHHH
Confidence 34578888999888776 332 223222222332 35789999999976554 3333211 0 11122
Q ss_pred HhhcccCCCceee-------cCCCCcHHHHHHHhccCC--CCCCEEEEEcCCcChhHHHHHHHhCCCee
Q 022176 145 VIQSSKCSLDVAF-------SPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (301)
Q Consensus 145 ~~~~~~~G~~~~~-------~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~~~~~L~~~L~~~G~~v 204 (301)
. +.++... .....++.+++..|.+.. ..+++++++.+.+....+...|.+.|.+|
T Consensus 82 i-----gavNti~~~~~g~l~G~ntD~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V 145 (271)
T 1nyt_A 82 A-----GAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAV 145 (271)
T ss_dssp H-----TCCSEEEECTTSCEEEECCHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred h-----CCceEEEEcCCCeEEEeCCCHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEE
Confidence 2 0122211 111234777777775422 25678888888666777888899998654
No 398
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=40.98 E-value=1.4e+02 Score=26.13 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=52.0
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (301)
Q Consensus 48 l~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iif-tS~~av~~f~~~l 121 (301)
+..++|.+..... ....+.+.+++.|+++...-.+... ..|.......+.+ .+.|.|++ .+...+..+++.+
T Consensus 141 ~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 141 KKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp CTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHH
Confidence 3457787765432 3356788899999987643322211 1233333333323 56889885 6777777788888
Q ss_pred HHcCCCCceEEEEc
Q 022176 122 KEAGTPNVRIGVVG 135 (301)
Q Consensus 122 ~~~~~~~~~i~avG 135 (301)
.+.++ +.+++..+
T Consensus 219 ~~~g~-~~~~~~~~ 231 (392)
T 3lkb_A 219 KRLGL-KMRHLGAH 231 (392)
T ss_dssp HHTTC-CCEEEECG
T ss_pred HHcCC-CceEEEec
Confidence 88876 45666553
No 399
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=40.91 E-value=1.7e+02 Score=25.03 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
..+.++++ |+.+.+.....+.+. +++.+.... -.-+++.. ........+.|.+.|+.+..+
T Consensus 90 i~~~a~~~------g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdGiIi~~-~~~~~~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 90 INQVLEDT------ELQPVVGVTDYLPEKEEKVLYEMLSWR--PSGVIIAG-LEHSEAARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHTSS------SSEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEEC-SCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEEC-CCCCHHHHHHHHhCCCCEEEE
Confidence 34555666 888766554444443 333343322 12344443 333446777888899887655
No 400
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=40.82 E-value=95 Score=25.62 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-... =+..+++.|.+.|++|..+
T Consensus 15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 678899999998765 4568999999999987654
No 401
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.65 E-value=1.7e+02 Score=24.96 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
..+++++. |+...+.....+.+. +++.+.... -.-+++.... ....+.+.|.+.|+.+..+
T Consensus 84 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~-~~~~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 84 IETVLDAA------GYQMLIGNSHYDAGQELQLLRAYLQHR--PDGVLITGLS-HAEPFERILSQHALPVVYM 147 (339)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEECSC-CCTTHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHcCC--CCEEEEeCCC-CCHHHHHHHhcCCCCEEEE
Confidence 45677777 988766555444433 334443332 1234444333 3345677888889877554
No 402
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=40.48 E-value=47 Score=26.94 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~ 111 (301)
+-..++|+|..-...-....+.|++.|+++..++. . + .+..+|.||++-.
T Consensus 17 ~~~~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~d~iil~GG 66 (208)
T 2iss_D 17 RGSHMKIGVLGVQGDVREHVEALHKLGVETLIVKL------P--E-------QLDMVDGLILPGG 66 (208)
T ss_dssp ---CCEEEEECSSSCHHHHHHHHHHTTCEEEEECS------G--G-------GGGGCSEEEECSS
T ss_pred CCCCcEEEEEECCCchHHHHHHHHHCCCEEEEeCC------h--H-------HHhhCCEEEECCC
Confidence 33456888886533345567899999988776531 1 1 2346899999765
No 403
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=40.39 E-value=59 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=33.1
Q ss_pred CeEEEeCCC-CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 51 ~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
++|+|.-.. +.-..+.+.|++.|+++..++. ++ .+..+|.||++-+..
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~------~~---------~l~~~d~lil~G~g~ 51 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD------PK---------AHEEADLLVLPGQGH 51 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS------TT---------SCSSCSEEEECCCSC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC------hH---------HcccCCEEEECCCCc
Confidence 578877432 3456788999999998886541 11 356899999976343
No 404
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=40.29 E-value=19 Score=31.02 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCeeEEEeeeeeeeCC---------------------------------CCcHHHHHHcCCCCEEEEECh-
Q 022176 192 EIEEGLSNRGFEVVRLNTYTTEPVH---------------------------------HVDQTVLKQALSIPVVAVASP- 237 (301)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~---------------------------------~~~~~~~~~~~~~d~I~ftS~- 237 (301)
.+.+.|++.|.+|..+.+|+....+ ++.....+.+...|.|||.+|
T Consensus 24 ~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~IV~~~P~ 103 (273)
T 1d4a_A 24 AAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPL 103 (273)
T ss_dssp HHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEEEEECch
Confidence 4556677889999999998753100 000112223567899999885
Q ss_pred ------HHHHHHHHhhh
Q 022176 238 ------SAVRSWVNLIS 248 (301)
Q Consensus 238 ------sav~~~~~~l~ 248 (301)
..++.|++.+-
T Consensus 104 y~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 104 QWFGVPAILKGWFERVF 120 (273)
T ss_dssp BTTBCCHHHHHHHHHHS
T ss_pred hhccCCHHHHHHHHHHH
Confidence 78999999864
No 405
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=40.21 E-value=65 Score=29.22 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=96.8
Q ss_pred CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEchhhH--HHHHHHhhcccCCCceeecCCCCc-HHHHHHHhccCC
Q 022176 100 DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA--SIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNG 175 (301)
Q Consensus 100 l~~~d~IiftS~~a-v~~f~~~l~~~~~~~~~i~avG~~Ta--~~L~~~~~~~~~G~~~~~~p~~~~-~e~L~~~l~~~~ 175 (301)
..+|+.||+.+... ....++.+.+...+.+ + ..|.... ..+.... .+ .+..+.+. +...++.|.+..
T Consensus 85 ~~gyk~II~n~~~~~~~~~i~~lkekrvDgI-I-i~~~~~ed~~~i~~~~-----di--~V~~Dn~~Ggy~A~~~Li~~G 155 (371)
T 3qi7_A 85 DKEVQAIVVSTDQAGLLPALQKVKEKRPEII-T-ISAPMGDDKNQLSQFV-----DV--NLGVSAEERGKVLAERSKEMG 155 (371)
T ss_dssp CTTEEEEEEECSSCCCHHHHHHHHHHCTTSE-E-EESSCCSCHHHHHHHS-----SE--EEECCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEECCCcchHHHHHHHHhcCCCEE-E-EeccccccchhhcccC-----ce--EEEeChHHHHHHHHHHHHHCC
Confidence 46788999876541 1334555665555532 2 2333221 1222221 32 22233322 333446676653
Q ss_pred CCCCEEEEEcCCcC---------hhHHHHHHHhCCCeeEEEeeeeeeeCCCCc-H---HHHH--------HcCCCCEEEE
Q 022176 176 KKKCTVLYPASAKA---------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-Q---TVLK--------QALSIPVVAV 234 (301)
Q Consensus 176 ~~~~~vLi~rg~~~---------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~---~~~~--------~~~~~d~I~f 234 (301)
.++|+++.|... ..-+.+.|+++|+.+..... ..+..... . +++. .-..+++|..
T Consensus 156 --hk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~--~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa 231 (371)
T 3qi7_A 156 --AKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNT--PNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFG 231 (371)
T ss_dssp --CSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEE--CCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred --CCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecC--CCCchHHHHHHHHHHHhccccchhhccCCCcEEEE
Confidence 478999987542 23477889999997754421 11111101 1 1121 1135788888
Q ss_pred EChHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 235 ASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 235 tS~sav~~~~~~l~~~~~~~~~i~aIG~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
+|=..+.-+++.+.+.+. .++=-+.-.-+--.--.+|+.. .-.+..+...+++.|++.+.+.+
T Consensus 232 tND~mAiG~ikal~e~Gi-~VPed~~psp~~~yp~alg~~~-~~~~~~d~~~i~~~i~~~~~~~g 294 (371)
T 3qi7_A 232 VNEYMDEVILTKALELKY-IVAEQSNPSPIQTYPSVMGLKI-SEKDAQNYDKINDMISEKAKAFG 294 (371)
T ss_dssp SSHHHHHHHHHHHHHHCC-BBCCCSSCCTTTTHHHHHTCCC-CGGGTTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCC-ccCCCCCCCccccCcchhcccc-ChhhccCHHHHHHHHHHHHHhcC
Confidence 888888888887776542 1110111111333444567653 11246789999999998876654
No 406
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=40.06 E-value=56 Score=25.65 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=55.1
Q ss_pred CCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC---CccEEEEeC---------hHHHHHHHHHHHHcC
Q 022176 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---IFDWIIITS---------PEAGSVFLEAWKEAG 125 (301)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~---~~d~IiftS---------~~av~~f~~~l~~~~ 125 (301)
+.++..++.+.|+++|+.+..+.- .+......+...++.++ .+|.|+... +-.-..|...+...+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn---~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 111 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSN---TATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQ 111 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEEC---CSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEEC---CCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcC
Confidence 445678889999999976653321 11111133444454433 356554432 223455666666667
Q ss_pred CCCceEEEEchh-h--HHHHHHHhhcccCCCceeecCC
Q 022176 126 TPNVRIGVVGAG-T--ASIFEEVIQSSKCSLDVAFSPS 160 (301)
Q Consensus 126 ~~~~~i~avG~~-T--a~~L~~~~~~~~~G~~~~~~p~ 160 (301)
.+.-.++.||.. . ....++. |+.+..+..
T Consensus 112 ~~~~~~l~VGD~~~~Di~~A~~a------G~~~i~v~~ 143 (189)
T 3ib6_A 112 IDKTEAVMVGNTFESDIIGANRA------GIHAIWLQN 143 (189)
T ss_dssp CCGGGEEEEESBTTTTHHHHHHT------TCEEEEECC
T ss_pred CCcccEEEECCCcHHHHHHHHHC------CCeEEEECC
Confidence 777788999987 3 4455666 888776654
No 407
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=39.97 E-value=32 Score=28.88 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCC--C--chHHHHHHhcCCC--ccEEEEeChHHHHHHHHHHHHcCC---CCceEEEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGP--D--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVV 134 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~--d--~~~l~~~l~~l~~--~d~IiftS~~av~~f~~~l~~~~~---~~~~i~av 134 (301)
-+.+.++++|..+...-+....... . ...+.+.|..... .|+|+.++-..+..+++.+.+.++ +++.++..
T Consensus 157 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~ 236 (298)
T 3tb6_A 157 GFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGY 236 (298)
T ss_dssp HHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEec
Confidence 3556677777654322222221111 1 2334555544445 778877777666667777777664 35666665
Q ss_pred chh
Q 022176 135 GAG 137 (301)
Q Consensus 135 G~~ 137 (301)
+..
T Consensus 237 d~~ 239 (298)
T 3tb6_A 237 DDS 239 (298)
T ss_dssp BCC
T ss_pred CCc
Confidence 544
No 408
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.81 E-value=40 Score=28.35 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=53.8
Q ss_pred CCeEEEeCCCC-------chHHHHHHHHhCCCcEEEeceeEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHH
Q 022176 50 NPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (301)
Q Consensus 50 g~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~----~~l~~~l~~l~~~d~IiftS~~av~~f~ 118 (301)
.++|++..... +..-+.+.++++|..+.....+.. ..+. +.+.+.+..-...|+|+..+-..+..++
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI--ETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALV 204 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT--TSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecc--ccchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 45677664432 224466778888876543222211 1122 2344455444578999998888777788
Q ss_pred HHHHHcCC---CCceEEEEchhh
Q 022176 119 EAWKEAGT---PNVRIGVVGAGT 138 (301)
Q Consensus 119 ~~l~~~~~---~~~~i~avG~~T 138 (301)
+.+.+.++ +++.++..+...
T Consensus 205 ~al~~~g~~vP~di~vig~d~~~ 227 (288)
T 3gv0_A 205 AGFEAAGVKIGEDVDIVSKQSAE 227 (288)
T ss_dssp HHHHTTTCCTTTSCEEEEEESST
T ss_pred HHHHHcCCCCCCceEEEEecChH
Confidence 88888875 477888877654
No 409
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=39.78 E-value=1.1e+02 Score=25.48 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEchhh
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGT 138 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d--~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~-~~~i~avG~~T 138 (301)
.-+.+.|+++|.++.....+......+ ...+.+.|..-...|+|+..+-..+...++.+.+.++. ++.++..+...
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~ 224 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDK 224 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCH
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCH
Confidence 346667778888776554333221111 12345555455678999988888777888888888764 77888887643
No 410
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=39.52 E-value=96 Score=21.70 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=63.1
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHhhhccc
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 251 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS----~sav~~~~~~l~~~~ 251 (301)
.+||++-.+.. +..+...|+..|+.+.... ...+.++.+ ..+|+|+.-- ..+. .+++.++...
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~---------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~-~~~~~l~~~~ 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAE---------DYDSAVNQLNEPWPDLILLAWMLPGGSGI-QFIKHLRRES 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEC---------SHHHHHTTCSSSCCSEEEEESEETTEEHH-HHHHHHHTST
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeC---------CHHHHHHHHhccCCCEEEEecCCCCCCHH-HHHHHHHhCc
Confidence 47888777654 5678888888887543211 112233322 3678877642 1233 3444444332
Q ss_pred -CCCceEEEECHHH-HHHH---HHcCCCeeEecCCCCHHHHHHHHHHHHHccCC
Q 022176 252 -QWSNSVACIGETT-ASAA---KRLGLKNVYYPTHPGLEGWVDSILEALREHGH 300 (301)
Q Consensus 252 -~~~~~i~aIG~~T-a~al---~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~~ 300 (301)
..+.+++.++... .+.. .+.|... ++....+.+.|.+.+...++...+
T Consensus 73 ~~~~~~ii~~s~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~l~~~i~~~~~~~~~ 125 (127)
T 2jba_A 73 MTRDIPVVMLTARGEEEDRVRGLETGADD-CITKPFSPKELVARIKAVMRRISP 125 (127)
T ss_dssp TTTTSCEEEEEETTHHHHHHTTCCCSCSE-EEEESCCHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHHHhcccC
Confidence 1356666664332 2222 2346544 667778999999999988876544
No 411
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=39.45 E-value=34 Score=27.16 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCCeeEEEeeeeeeeCCC----------CcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhc
Q 022176 191 NEIEEGLSNRGFEVVRLNTYTTEPVHH----------VDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (301)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~----------~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~ 249 (301)
+.+.+.|.+.|++|..+.+++...... .+....+.+..+|.|+|-|| ..++.|++.+..
T Consensus 24 ~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~ 99 (200)
T 2a5l_A 24 RQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSS 99 (200)
T ss_dssp HHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHH
T ss_pred HHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHHHHHHHHHH
Confidence 346677777888888777776421110 00001223567999999986 578889888743
No 412
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=39.32 E-value=61 Score=24.85 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCceEEEEchhhHHHHHH-HhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeE
Q 022176 127 PNVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVV 205 (301)
Q Consensus 127 ~~~~i~avG~~Ta~~L~~-~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~ 205 (301)
.+.+++|-| .|++.|++ . |+.+..+-+.. .++++.+.+.+++..++
T Consensus 30 ~Gf~l~AT~-gTa~~L~e~~------Gl~v~~v~k~~------------------------~eG~p~I~d~I~~geId-- 76 (134)
T 2xw6_A 30 ARFPLVATG-TTGRRIEEAT------GLTVEKLLSGP------------------------LGGDQQMGARVAEGRIL-- 76 (134)
T ss_dssp TTSCEEECH-HHHHHHHHHH------CCCCEECSCGG------------------------GTHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEcc-HHHHHHHHhh------CceEEEEEecC------------------------CCCcchHHHHHHCCCcc--
Confidence 356788875 48899998 7 98775442111 02445566666544332
Q ss_pred EEeeeeeee---C--CCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhc
Q 022176 206 RLNTYTTEP---V--HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 206 ~~~vY~~~~---~--~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
-+.- .+.| . ..+...+.+..-.+++=++|+..+++++++.++.
T Consensus 77 lVIn-t~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al~~ 124 (134)
T 2xw6_A 77 AVIF-FRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWLQS 124 (134)
T ss_dssp EEEE-ECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHHHT
T ss_pred EEEE-ccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHHHH
Confidence 2222 1221 1 1122223332345778899999999999998854
No 413
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=39.23 E-value=65 Score=31.75 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCCCCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-------
Q 022176 46 ASNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA------- 113 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a------- 113 (301)
..+.|++|+|.-..+ +...+.+.|++.|++|..+-.-.- ...|. .+.. . ....||.||+.....
T Consensus 533 ~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g-~GvD~-t~~~-~-~s~~fDAVvlPGG~~~~~~~~~ 608 (688)
T 3ej6_A 533 PTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA-SGVDQ-TYSA-A-DATAFDAVVVAEGAERVFSGKG 608 (688)
T ss_dssp SCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC-TTCCE-ETTT-C-CGGGCSEEEECTTCCTTTSTTT
T ss_pred CCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC-CCccc-Cccc-C-ChhcCcEEEECCCccccccccc
Confidence 357899998876544 224567899999999987643211 11121 1111 0 234699999977631
Q ss_pred ----------HHHHHHHHHHcCCCCceEEEEchhhHHHHHHH
Q 022176 114 ----------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 114 ----------v~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
+..|+....+ .+.+|++||.+. ..|.+.
T Consensus 609 ~~d~Lr~~~~a~~fV~e~~~---hgKpIAAIchgp-~lL~~A 646 (688)
T 3ej6_A 609 AMSPLFPAGRPSQILTDGYR---WGKPVAAVGSAK-KALQSI 646 (688)
T ss_dssp TCCTTSCTTHHHHHHHHHHH---TTCCEEEEGGGH-HHHHHT
T ss_pred chhhhccCHHHHHHHHHHHH---cCCEEEEeCccH-HHHHHc
Confidence 2233433333 367899999874 778888
No 414
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.15 E-value=40 Score=28.25 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHHHhC-CCcEEEeceeEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh
Q 022176 63 GKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~d~----~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~ 137 (301)
.-+.+.++++ |+++... + ....+. +.+.+.|..-.+.|+|+..+-..+..+++.+.+.++.++.++..+..
T Consensus 155 ~gf~~~l~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 155 RGFLKGIENEPTLSIVDS--V--SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp HHHHHHHTTCTTEEEEEE--E--ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHhCCCcEEeee--c--cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 4455667777 7655432 1 111121 23455554456789999888887777888888888766666666544
No 415
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=38.97 E-value=88 Score=26.13 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=42.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~~l 121 (301)
...+++||||-... =+..+++.|.+.|+++...-.... ...+.+.+.+.... .+..+ +++..+++.+++.+
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~ 98 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR---EAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAV 98 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh---hHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHH
Confidence 34578999998765 457899999999998753211100 01122333332221 12222 36788888888776
Q ss_pred HH
Q 022176 122 KE 123 (301)
Q Consensus 122 ~~ 123 (301)
.+
T Consensus 99 ~~ 100 (272)
T 4e3z_A 99 DR 100 (272)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 416
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=38.92 E-value=94 Score=25.58 Aligned_cols=34 Identities=15% Similarity=-0.034 Sum_probs=27.1
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.++.|++||||-... =...+++.|.+.|++|..+
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 37 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGF 37 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 357789999998764 4578999999999988754
No 417
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.74 E-value=1.1e+02 Score=22.32 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=63.1
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS----~~av~~f~~~ 120 (301)
....+++||+.-... ....+...|++.|.. +.+....+.++..+.+ .-..+|.|++-- .++.+ +++.
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~------~~v~~~~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~ 87 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDV------ESVLQAKNGQEAIQLL-EKESVDIAILDVEMPVKTGLE-VLEW 87 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTE------EEEEEESSHHHHHHHH-TTSCCSEEEECSSCSSSCHHH-HHHH
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCc------EEEEEECCHHHHHHHh-hccCCCEEEEeCCCCCCcHHH-HHHH
Confidence 345567899887654 345677778777622 2222223333444445 335689887742 23444 5566
Q ss_pred HHHcCCCCceEEEEchh-hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccC
Q 022176 121 WKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (301)
Q Consensus 121 l~~~~~~~~~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~ 174 (301)
+.+.. ++++++++... ......+.+.. |.. +++....+.+.|...+...
T Consensus 88 l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~Kp~~~~~l~~~i~~~ 137 (150)
T 4e7p_A 88 IRSEK-LETKVVVVTTFKRAGYFERAVKA---GVD-AYVLKERSIADLMQTLHTV 137 (150)
T ss_dssp HHHTT-CSCEEEEEESCCCHHHHHHHHHT---TCS-EEEETTSCHHHHHHHHHHH
T ss_pred HHHhC-CCCeEEEEeCCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHH
Confidence 66543 46777666543 33333332211 654 4666777888888877654
No 418
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=38.64 E-value=1.5e+02 Score=23.52 Aligned_cols=106 Identities=23% Similarity=0.203 Sum_probs=62.1
Q ss_pred EEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEChHHHHHHHHhhhcccCCCce
Q 022176 180 TVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNS 256 (301)
Q Consensus 180 ~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~sav~~~~~~l~~~~~~~~~ 256 (301)
+||++-.+.. +..+...|...|+.|.. +. ...+.+..+ ..+|+|+....... .+++.+... ..+++
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~l~~~~~dlvilp~~~g~-~~~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADV---TE------SLEDGEYLMDIRNYDLVMVSDKNAL-SFVSRIKEK-HSSIV 70 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEE---ES------SHHHHHHHHTTSCCSEEEECCTTHH-HHHHHHHHH-CTTSE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEE---EC------CHHHHHHHHhcCCCCEEEeCCCCHH-HHHHHHHhC-CCCCc
Confidence 4666665543 56788888888875531 11 112233322 46898883333333 344444433 22566
Q ss_pred EEEEC----HHHHHHHHHcCCCeeEecCCC-CHHHHHHHHHHHHHc
Q 022176 257 VACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 297 (301)
Q Consensus 257 i~aIG----~~Ta~al~~~G~~~~~v~~~p-s~e~ll~ai~~~~~~ 297 (301)
++.++ ......+.+.|... ++.... +.+.|.++|...++.
T Consensus 71 ii~lt~~~~~~~~~~~~~~Ga~~-~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 71 VLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSE-EEETTCSCTHHHHHHHHHHTSS
T ss_pred EEEEECCCCHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHHhcc
Confidence 66664 33445555678765 566767 899999999887654
No 419
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=38.52 E-value=1.7e+02 Score=24.21 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=30.1
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+.+.+.....+.+. +++.+.... -.-+++.... ..+...+.|. .|+.+..+.
T Consensus 30 i~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~-~~~~~~~~l~-~~iPvV~~~ 93 (285)
T 3c3k_A 30 IEKTAEKN------GYRILLCNTESDLARSRSCLTLLSGKM--VDGVITMDAL-SELPELQNII-GAFPWVQCA 93 (285)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHTHHHHTTC--CSEEEECCCG-GGHHHHHHHH-TTSSEEEES
T ss_pred HHHHHHHc------CCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEeCCC-CChHHHHHHh-cCCCEEEEc
Confidence 45666777 888766544444433 233333221 1234443332 2234456677 887765543
No 420
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=38.52 E-value=1.1e+02 Score=22.14 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=61.6
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~ 122 (301)
..+++||+.-... ....+...|++.|+++..+ .+..+....+.. ..+|.|++- ..++.+ +++.+.
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~ 75 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVK-THPHLIITEANMPKISGMD-LFNSLK 75 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHH-HHHHHH
Confidence 3467888876654 5578888999888755421 222333334423 468988875 234544 556665
Q ss_pred Hc-CCCCceEEEEchh-hHHHH---HHHhhcccCCCceeecCCCCcHHHHHHHhc
Q 022176 123 EA-GTPNVRIGVVGAG-TASIF---EEVIQSSKCSLDVAFSPSKATGKILASELP 172 (301)
Q Consensus 123 ~~-~~~~~~i~avG~~-Ta~~L---~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~ 172 (301)
+. ...+++++++... ..... .+. |.. +++....+.+.|...+.
T Consensus 76 ~~~~~~~~pii~ls~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~L~~~i~ 123 (147)
T 2zay_A 76 KNPQTASIPVIALSGRATAKEEAQLLDM------GFI-DFIAKPVNAIRLSARIK 123 (147)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHH------TCS-EEEESSCCHHHHHHHHH
T ss_pred cCcccCCCCEEEEeCCCCHHHHHHHHhC------CCC-EEEeCCCCHHHHHHHHH
Confidence 52 2356777766543 32222 334 654 35566777888777664
No 421
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=38.50 E-value=37 Score=24.12 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.2
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEE
Q 022176 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (301)
Q Consensus 45 ~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~ 77 (301)
..++.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 3679999999986543 56889999999999875
No 422
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=38.38 E-value=22 Score=28.80 Aligned_cols=70 Identities=19% Similarity=0.228 Sum_probs=42.5
Q ss_pred CEEEEEcCCc-C-----hhHHHHHHHhCCCeeEEEeeeeeeeC----------------CCCcHHHHHHcCCCCEEEEEC
Q 022176 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPV----------------HHVDQTVLKQALSIPVVAVAS 236 (301)
Q Consensus 179 ~~vLi~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~----------------~~~~~~~~~~~~~~d~I~ftS 236 (301)
.+||++-+.. + .+.+.+.|++.|++|..+.+++..+. ++......+.+..+|.|+|.|
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 4666554432 2 23566777788999888888775100 000011122345789999988
Q ss_pred h-------HHHHHHHHhhh
Q 022176 237 P-------SAVRSWVNLIS 248 (301)
Q Consensus 237 ~-------sav~~~~~~l~ 248 (301)
| ..++.|++.+.
T Consensus 87 P~y~~~~~~~lk~~ld~~~ 105 (211)
T 1ydg_A 87 PTRFGGATSQMRAFIDTLG 105 (211)
T ss_dssp EEETTEECHHHHHHHHTTH
T ss_pred CccccCccHHHHHHHHHhc
Confidence 5 67899998864
No 423
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=38.22 E-value=54 Score=28.28 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
.|.+|+++.|.- ..+...++..|+++..+|+-. ....|.+.+++.+.+-.+...|++++++.
T Consensus 91 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 91 LEAQLVIPELTY--GDGEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp TTCEEEEESSSC--THHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred CCCeEEECCCCc--hHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 477899998764 345677788999999988742 12235677777774324677888877643
No 424
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=38.05 E-value=1.7e+02 Score=28.94 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=55.2
Q ss_pred CeEEEeCCCC------chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022176 51 PKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (301)
Q Consensus 51 ~~IlitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~ 124 (301)
..|++..+.+ .-.+|++.|++.|++|+.. .+.+.....++.-..+++||++---....|++.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~ 73 (715)
T 3n75_A 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKM 73 (715)
T ss_dssp CEEEEECCCSCHHHHHHHHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCcccchHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHh
Confidence 3466655543 3368999999999998522 2334455566566789999998766556677777765
Q ss_pred CCCCceEEEEchhh
Q 022176 125 GTPNVRIGVVGAGT 138 (301)
Q Consensus 125 ~~~~~~i~avG~~T 138 (301)
+ .+++||.++...
T Consensus 74 ~-~~iPVFl~~~~~ 86 (715)
T 3n75_A 74 N-ENLPLYAFANTY 86 (715)
T ss_dssp C-TTCEEEEECCTT
T ss_pred C-CCCCEEEEecCC
Confidence 4 589999988773
No 425
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=37.93 E-value=75 Score=27.67 Aligned_cols=148 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChH--HH--HHHHHHHHHc-CCCCceEEEEch
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLEAWKEA-GTPNVRIGVVGA 136 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~--av--~~f~~~l~~~-~~~~~~i~avG~ 136 (301)
-.+.+++.|++...+.+-+.. ..++|...+ ......|.|+..-|- .+ +..++.+... ..+++. +
T Consensus 55 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~-----~ 126 (285)
T 3l07_A 55 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH-----P 126 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCC-----h
Confidence 445677889988765542211 123454444 445689999998872 11 2233333211 112222 2
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-...+.| -|+.+.++.|.... ..|++++++...+ ....+...|.+.|++|+.+. ++
T Consensus 127 ~N~G~l~-~------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~h--s~- 194 (285)
T 3l07_A 127 TNVGRLQ-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCH--RF- 194 (285)
T ss_dssp HHHHHHH-H------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEEC--TT-
T ss_pred hheeehh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEe--CC-
Confidence 2222221 1 32122444 46778777776553 3788998887444 57789999999999885543 21
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.. .+.+...+.|+|+-+.+
T Consensus 195 --t~---~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 195 --TT---DLKSHTTKADILIVAVG 213 (285)
T ss_dssp --CS---SHHHHHTTCSEEEECCC
T ss_pred --ch---hHHHhcccCCEEEECCC
Confidence 11 12333578899888776
No 426
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=37.85 E-value=85 Score=25.95 Aligned_cols=74 Identities=7% Similarity=0.008 Sum_probs=41.7
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-CccEEE--EeChHHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAWK 122 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~d~Ii--ftS~~av~~f~~~l~ 122 (301)
.+.+++||||-... =+..+++.|.+.|++++.+-.- . ....+.+.+.+...+ ...++. +++..+++.+++.+.
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 80 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS--D-TTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAM 80 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--C-HHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC--C-hHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 45688999998765 3568999999999987643110 0 000122222221111 122222 478888888887765
Q ss_pred H
Q 022176 123 E 123 (301)
Q Consensus 123 ~ 123 (301)
+
T Consensus 81 ~ 81 (264)
T 3i4f_A 81 S 81 (264)
T ss_dssp H
T ss_pred H
Confidence 4
No 427
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=37.84 E-value=53 Score=26.01 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=31.1
Q ss_pred HHHHHHHh-CCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh-------HHHHHHHHhhhc
Q 022176 192 EIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (301)
Q Consensus 192 ~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~-------sav~~~~~~l~~ 249 (301)
.+.+.|.+ .|++|..+.+.+. ..+ .+.++|.|+|-|| ..++.|++.+..
T Consensus 24 ~i~~~l~~~~g~~v~~~~l~~~-----~~~----~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 24 LVAEGARSLEGTEVRLKHVDEA-----TKE----DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp HHHHHHHTSTTEEEEEEETTTC-----CHH----HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGG
T ss_pred HHHHHHhhcCCCeEEEEEhhhC-----CHH----HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhh
Confidence 45666776 7776655544321 111 2346899999885 568889888754
No 428
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=37.81 E-value=31 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=32.4
Q ss_pred CccEEEEeChHHHHHHHHHHHHcC-CCCceEEEEchhh----HHHHHHHhhcccCCCceeecC
Q 022176 102 IFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSP 159 (301)
Q Consensus 102 ~~d~IiftS~~av~~f~~~l~~~~-~~~~~i~avG~~T----a~~L~~~~~~~~~G~~~~~~p 159 (301)
+.|.+||.|||++.---...++.. -.++++++||... .+.+++. |+--.+++
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~------g~GYIivk 120 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQ------GLGYILVK 120 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHT------TCEEEEET
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhc------CCcEEEEe
Confidence 689999999997643322222211 2477888887665 6677766 66544444
No 429
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=37.62 E-value=1.4e+02 Score=26.48 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCEEEEEcCCcC-----hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC--hHHHHHHHHhhh
Q 022176 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLIS 248 (301)
Q Consensus 178 ~~~vLi~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS--~sav~~~~~~l~ 248 (301)
.++|.++..+.. .+.+.+.+++.|++|.....|.... .+ ....+..+ .++|+|++.+ +..+..|++.+.
T Consensus 164 ~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d-~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 164 NNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV-SD-WGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFM 241 (419)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC-SC-CHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC-cc-HHHHHHHHHhcCCCEEEEccccCchHHHHHHHHH
Confidence 478888776543 3567788889999887666665422 22 22233333 5889999873 567788888887
Q ss_pred cccCCCceEEE
Q 022176 249 DTEQWSNSVAC 259 (301)
Q Consensus 249 ~~~~~~~~i~a 259 (301)
+.+. +..++.
T Consensus 242 ~~g~-~~~~~~ 251 (419)
T 3h5l_A 242 TDPT-NSLVYL 251 (419)
T ss_dssp TSCC-SCEEEE
T ss_pred HcCC-CceEEe
Confidence 6543 444443
No 430
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=37.51 E-value=2e+02 Score=24.78 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=87.2
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeE------eeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHHHHHHH
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ------HAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAWK 122 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~------~~~~~d~~~l~~~l~~l~~~d~I-iftS~~av~~f~~~l~ 122 (301)
.+|+|.-..+ ......+.+.+.|++ ...|+-. +...+-+..+.+...+ ...|.+ +||.+..+...+..+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i~G~~vy~sl~el~~~-~~~Dv~ii~vp~~~~~~~v~ea~ 91 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEAVKE-TDANASVIFVPAPFAKDAVFEAI 91 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEETTEEEESSHHHHHHH-HCCCEEEECCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceECCEeeeCCHHHHhhc-CCCCEEEEccCHHHHHHHHHHHH
Confidence 3466644322 355677888888988 3333221 0000112334444421 145655 5777887777777776
Q ss_pred HcCCCCceEEEEch---------hhHHHHHHHhhcccCCCceeecCCCC---cH-HHHHHHhccCCCCCCEEEEEcCCc-
Q 022176 123 EAGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPASAK- 188 (301)
Q Consensus 123 ~~~~~~~~i~avG~---------~Ta~~L~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~l~~~~~~~~~vLi~rg~~- 188 (301)
+.+ ++.++++. .-.+.+++. |+.+ +.|... +. ..+.-.+.......++|-++.-.+
T Consensus 92 ~~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~ 161 (294)
T 2yv1_A 92 DAG---IELIVVITEHIPVHDTMEFVNYAEDV------GVKI-IGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGT 161 (294)
T ss_dssp HTT---CSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-ECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCSH
T ss_pred HCC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCceeeccCcceeeecccCCCCCCCEEEEECCHH
Confidence 654 55434322 223344445 7753 334321 11 111011122112345676554433
Q ss_pred ChhHHHHHHHhCCCeeEEEeeeeeeeC-CCCcHHHHHHc---CCCCEEEEECh
Q 022176 189 ASNEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 237 (301)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~I~ftS~ 237 (301)
-...+.+.+.++|.-+..+.-.-.... .....++++.+ .+-++|++..-
T Consensus 162 l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 214 (294)
T 2yv1_A 162 LTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGE 214 (294)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 355677888899988877776666543 22233444433 34556666654
No 431
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=37.51 E-value=24 Score=30.03 Aligned_cols=151 Identities=9% Similarity=-0.015 Sum_probs=84.2
Q ss_pred chHHHH-HHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhH
Q 022176 61 KNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (301)
Q Consensus 61 ~~~~l~-~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta 139 (301)
.+..+- ..+++.|.+..+.|+- +.+ .+.+...+.+ + .++..+-+|-|.=...+ +++. . .
T Consensus 14 ~SP~~hn~~~~~~gl~~~Y~~~~-v~~-~~l~~~~~~~-~-~~~~G~nVT~P~K~~v~-~~~d-------------~--~ 73 (253)
T 3u62_A 14 ISPRLYNEYFKRAGMNHSYGMEE-IPP-ESFDTEIRRI-L-EEYDGFNATIPHKERVM-RYVE-------------P--S 73 (253)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEEE-CCG-GGHHHHHHHH-H-HHCSEEEECTTCTTGGG-GGSE-------------E--C
T ss_pred ccHHHHHHHHHHcCCCCEEEeEe-cCH-HHHHHHHHHH-h-hCCCceeecCChHHHHH-HHhC-------------C--C
Confidence 334333 4677889887776642 221 2223333333 2 46788888887654432 2221 1 1
Q ss_pred HHHHHHhhcccCCC-ceee--cCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCC
Q 022176 140 SIFEEVIQSSKCSL-DVAF--SPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (301)
Q Consensus 140 ~~L~~~~~~~~~G~-~~~~--~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (301)
...+.. |- +... ....-+..+++..|.+....+ +++++...+....+...|.+.|+ .++.+|.+.+..
T Consensus 74 ~~A~~i------GAvNTi~~~~G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~k 144 (253)
T 3u62_A 74 EDAQRI------KAVNCVFRGKGYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIER 144 (253)
T ss_dssp HHHHHH------TCCCEEETTEEECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHH
T ss_pred HHHHHc------CcceEeecCEEEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 223333 32 2211 223345778888887654467 99999988778889999999996 234556553211
Q ss_pred -----C-----CcHHHHHHcCCCCEEEEEChHHH
Q 022176 217 -----H-----VDQTVLKQALSIPVVAVASPSAV 240 (301)
Q Consensus 217 -----~-----~~~~~~~~~~~~d~I~ftS~sav 240 (301)
. ..+...+.+.+.|+|+-+.|..+
T Consensus 145 a~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm 178 (253)
T 3u62_A 145 AKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGM 178 (253)
T ss_dssp HHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTT
T ss_pred HHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCC
Confidence 0 01112222457899998877553
No 432
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=37.49 E-value=62 Score=26.53 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCcC-------hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhc
Q 022176 177 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (301)
Q Consensus 177 ~~~~vLi~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~ 249 (301)
.+.+|+|+-...+ -..+.+.|++.|+++..+.+.+ ...++..+.+.+.|.|+++-.++.. +++.+++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~~-l~~~L~~ 99 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTFF-LLQELKR 99 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHHH-HHHHHHH
Confidence 4689988864333 2467889999999876655433 2233333445678999999887774 5555554
Q ss_pred c
Q 022176 250 T 250 (301)
Q Consensus 250 ~ 250 (301)
.
T Consensus 100 ~ 100 (206)
T 3l4e_A 100 T 100 (206)
T ss_dssp H
T ss_pred C
Confidence 3
No 433
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=37.42 E-value=1.5e+02 Score=23.40 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~ 129 (301)
++||+.-... -...+...|++.|+++... .+..+....+ .-..+|.|+....++.+ +++.+.+. ..++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~-~~~~lr~~-~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALS-FVSRIKEK-HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHH-HHHHHHHH-CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHH-HHHHHHhC-CCCC
Confidence 3577766543 3456777888888765421 2223333444 33578999944456665 55666655 3377
Q ss_pred eEEEEchh-hHHHHHHHhhcccCCCceeecCCCC-cHHHHHHHhccCC
Q 022176 130 RIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (301)
Q Consensus 130 ~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~-~~e~L~~~l~~~~ 175 (301)
+++++... ......+.+.. |.. +++..+. +.+.|...+....
T Consensus 70 ~ii~lt~~~~~~~~~~~~~~---Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEEESSCCHHHHHHHHHH---TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred cEEEEECCCCHHHHHHHHHc---CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 87776543 22222222111 554 3566677 8888888776543
No 434
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=37.40 E-value=1.1e+02 Score=21.80 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe---------ChHHHHHHHH
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT---------SPEAGSVFLE 119 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift---------S~~av~~f~~ 119 (301)
+++||+.-... ....+...|++.|+++..+ .+..+....+.. ..+|.|++- ..++.+ +++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~-~~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLF-WLH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHH-HHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHH-HHH
Confidence 56888877654 3457778888888765421 222333344433 468888874 234444 455
Q ss_pred HHHHcCCCCceEEEEchh-hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 120 AWKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 120 ~l~~~~~~~~~i~avG~~-Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
.+.+.. ++++++++... ......+.+.. |.. ++...+.+.+.|...+..
T Consensus 73 ~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~ 122 (140)
T 2qr3_A 73 EIKRQY-RDLPVVLFTAYADIDLAVRGIKE---GAS-DFVVKPWDNQKLLETLLN 122 (140)
T ss_dssp HHHHHC-TTCCEEEEEEGGGHHHHHHHHHT---TCC-EEEEESCCHHHHHHHHHH
T ss_pred HHHhhC-cCCCEEEEECCCCHHHHHHHHHc---Cch-heeeCCCCHHHHHHHHHH
Confidence 565543 46677666543 33333332211 554 355566778888777754
No 435
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=37.23 E-value=25 Score=31.20 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=42.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+.-.+..+...++..|+++..+|+- -....|.+.+++.+.. .+...|++++++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~~v~~~~~~ 148 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP-WGEVFTPDQVEDAVKR-IRPRLLLTVQGD 148 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHhh-CCCeEEEEeCCC
Confidence 5788999987654445778888899999998862 1112255677777743 256788888843
No 436
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=37.21 E-value=30 Score=30.53 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=41.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.|.-....+...++..|+++..+|+-. ....|.+.+++.+... +...|++++++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-~~~~v~~~~~~ 169 (393)
T 1vjo_A 108 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETH-RPAILALVHAE 169 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-CCSEEEEESEE
T ss_pred CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhC-CceEEEEeccC
Confidence 47789999876544347777888999998888632 1123556777776331 45688888774
No 437
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=37.17 E-value=87 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=23.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
.+-.+++||||-..+ =+..+++.|.+.|++|..+
T Consensus 10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 44 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGL 44 (335)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 466789999998765 4568888898999988765
No 438
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=36.92 E-value=2e+02 Score=24.55 Aligned_cols=174 Identities=10% Similarity=0.025 Sum_probs=88.0
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchh-------------hHHHHHHHhhcccCCCc-----eeecCC---
Q 022176 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-------------TASIFEEVIQSSKCSLD-----VAFSPS--- 160 (301)
Q Consensus 102 ~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~-------------Ta~~L~~~~~~~~~G~~-----~~~~p~--- 160 (301)
..|.|++.|....+.+.+.+ +.+..++.+|... ....+++.+ |+. ..++..
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~---~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~G~~~~ 207 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHY---QTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKN-----GIKEQQNLLLQVGSDFG 207 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHH---CCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHT-----TCCTTCEEEEEECSCTT
T ss_pred CCcEEEEcCHHHHHHHHHHh---CCChhheEEecCCcCHHhcCcccchhHHHHHHHHh-----CCCCCCeEEEEeccchh
Confidence 57899999988877766543 3333344444321 112333332 432 112221
Q ss_pred CCcHHHHHHHhccCCCC---CCEEEEEcCCcChhHHHHHHHhCCC--eeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEE
Q 022176 161 KATGKILASELPKNGKK---KCTVLYPASAKASNEIEEGLSNRGF--EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (301)
Q Consensus 161 ~~~~e~L~~~l~~~~~~---~~~vLi~rg~~~~~~L~~~L~~~G~--~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ft 235 (301)
.-..+.|++.+...... +-++++++. +..+.+.+..++.|. .|..+. | ... +.+.+...|+++++
T Consensus 208 ~K~~~~li~a~~~l~~~~~~~~~l~i~G~-g~~~~~~~~~~~~~~~~~v~~~g-~-----~~~---~~~~~~~ad~~v~p 277 (374)
T 2iw1_A 208 RKGVDRSIEALASLPESLRHNTLLFVVGQ-DKPRKFEALAEKLGVRSNVHFFS-G-----RND---VSELMAAADLLLHP 277 (374)
T ss_dssp TTTHHHHHHHHHTSCHHHHHTEEEEEESS-SCCHHHHHHHHHHTCGGGEEEES-C-----CSC---HHHHHHHCSEEEEC
T ss_pred hcCHHHHHHHHHHhHhccCCceEEEEEcC-CCHHHHHHHHHHcCCCCcEEECC-C-----ccc---HHHHHHhcCEEEec
Confidence 12455566666554311 235555544 445667777666653 232222 1 111 22223467889988
Q ss_pred ChHH--HHHHHHhhhcccCCCceEEEECH-HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 236 SPSA--VRSWVNLISDTEQWSNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 236 S~sa--v~~~~~~l~~~~~~~~~i~aIG~-~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
|... -..+++.+. .++++++... ...+.+.+.+. -.++++..+.+++.++|.+.+.++
T Consensus 278 s~~e~~~~~~~Ea~a----~G~Pvi~~~~~~~~e~i~~~~~-g~~~~~~~~~~~l~~~i~~l~~~~ 338 (374)
T 2iw1_A 278 AYQEAAGIVLLEAIT----AGLPVLTTAVCGYAHYIADANC-GTVIAEPFSQEQLNEVLRKALTQS 338 (374)
T ss_dssp CSCCSSCHHHHHHHH----HTCCEEEETTSTTTHHHHHHTC-EEEECSSCCHHHHHHHHHHHHHCH
T ss_pred cccCCcccHHHHHHH----CCCCEEEecCCCchhhhccCCc-eEEeCCCCCHHHHHHHHHHHHcCh
Confidence 7210 001222222 1566766542 44566665333 234444568999999999887643
No 439
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=36.89 E-value=1.8e+02 Score=24.06 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=31.6
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcH---HHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATG---KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~---e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
..+++++. |+.+.+.....+. ..+++.+..... .-+++..... .....+.|.+.|+.|..+
T Consensus 30 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~-~~~~~~~l~~~~iPvV~~ 93 (287)
T 3bbl_A 30 MVREAGAV------NYFVLPFPFSEDRSQIDIYRDLIRSGNV--DGFVLSSINY-NDPRVQFLLKQKFPFVAF 93 (287)
T ss_dssp HHHHHHHT------TCEEEECCCCSSTTCCHHHHHHHHTTCC--SEEEECSCCT-TCHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHc------CCEEEEEeCCCchHHHHHHHHHHHcCCC--CEEEEeecCC-CcHHHHHHHhcCCCEEEE
Confidence 34566777 8877665433222 334455543321 2344433322 234566788888876544
No 440
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=36.89 E-value=64 Score=28.13 Aligned_cols=147 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChH--HH--HHHHHHHHHc-CCCCceEEEEch
Q 022176 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AG--SVFLEAWKEA-GTPNVRIGVVGA 136 (301)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~--av--~~f~~~l~~~-~~~~~~i~avG~ 136 (301)
-.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|- .+ +..++.+... ..+++ ++
T Consensus 56 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~-----~~ 127 (286)
T 4a5o_A 56 KRKDCEEVGFLSQAYDLPAET---SQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGF-----HP 127 (286)
T ss_dssp HHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCC-----SH
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccC-----Ch
Confidence 446778889988765542221 123444443 445689999988772 22 1222222111 11222 22
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcC-CcChhHHHHHHHhCCCeeEEEeeeeee
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTE 213 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (301)
.-...|- . |-. .+.| -|+.+.++.|.... ..|++++++.. ......+...|...|++|+.+.-+.
T Consensus 128 ~N~g~l~-~------g~~-~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-- 195 (286)
T 4a5o_A 128 YNIGRLA-Q------RMP-LLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-- 195 (286)
T ss_dssp HHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--
T ss_pred hhhHHHh-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--
Confidence 2222221 1 322 2443 46788877776553 37889988884 4467789999999999887654321
Q ss_pred eCCCCcHHHHHHcCCCCEEEEECh
Q 022176 214 PVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.. +.+...+.|+|+-+.+
T Consensus 196 ---~~---L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 196 ---RD---LADHVSRADLVVVAAG 213 (286)
T ss_dssp ---SC---HHHHHHTCSEEEECCC
T ss_pred ---cC---HHHHhccCCEEEECCC
Confidence 11 2223457898888776
No 441
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=36.85 E-value=1.8e+02 Score=24.92 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=14.5
Q ss_pred cCCCCHHHHHHHHHHHHHc
Q 022176 279 PTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 279 ~~~ps~e~ll~ai~~~~~~ 297 (301)
.+..+.+++.++|.+.+.+
T Consensus 326 ~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 326 VEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp CCTTCHHHHHHHHHHHHTC
T ss_pred eCCCCHHHHHHHHHHHHhC
Confidence 3445899999999888754
No 442
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=36.77 E-value=1.1e+02 Score=21.59 Aligned_cols=109 Identities=8% Similarity=0.052 Sum_probs=61.5
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHc
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~ 124 (301)
+++||+.-... ....+...|++.|..+... .+.+.....+ .-. +|.|++- ..++.+ +++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~--------~~~~~~~~~~-~~~-~dlvi~D~~l~~~~g~~-~~~~l~~~ 71 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAF--------QHPRAFLTLS-LNK-QDIIILDLMMPDMDGIE-VIRHLAEH 71 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEE--------SCHHHHTTSC-CCT-TEEEEEECCTTTTHHHH-HHHHHHHT
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeee--------cCHHHHHHhh-ccC-CCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 57888887654 3456777777775554321 1222222222 123 8888774 234554 45566554
Q ss_pred CCCCceEEEEchhhH------HHHHHHhhcccCCCc-eeecCCCCcHHHHHHHhccCC
Q 022176 125 GTPNVRIGVVGAGTA------SIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNG 175 (301)
Q Consensus 125 ~~~~~~i~avG~~Ta------~~L~~~~~~~~~G~~-~~~~p~~~~~e~L~~~l~~~~ 175 (301)
. ++.+++++..... +.+.+.+ +.. .++...+.+.+.|...+.+..
T Consensus 72 ~-~~~~ii~~s~~~~~~~~~~~~~~~~~-----~~g~~~~l~KP~~~~~l~~~l~~~~ 123 (135)
T 3eqz_A 72 K-SPASLILISGYDSGVLHSAETLALSC-----GLNVINTFTKPINTEVLTCFLTSLS 123 (135)
T ss_dssp T-CCCEEEEEESSCHHHHHHHHHHHHHT-----TCEEEEEEESSCCHHHHHHHHHHHS
T ss_pred C-CCCCEEEEEeccchhHHHHHHHHHHc-----CCCcceeeCCCCCHHHHHHHHHHHH
Confidence 3 5678877766654 3333332 332 246677788888888876543
No 443
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=36.65 E-value=1.2e+02 Score=25.97 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iif-tS~~av~~f~~~l~ 122 (301)
..++|.+..+.. ....+.+.++++|+++...-.+... ..|.......+.. .+.|.|++ .+...+..+++.+.
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA-NPDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFA 215 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS-SCCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC-CCcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHH
Confidence 346776654432 1356777888999887644333221 1243333333322 45788887 56666666788888
Q ss_pred HcCCC--CceEEEEch-hhHHHHH
Q 022176 123 EAGTP--NVRIGVVGA-GTASIFE 143 (301)
Q Consensus 123 ~~~~~--~~~i~avG~-~Ta~~L~ 143 (301)
+.++. +++++..+. .+...++
T Consensus 216 ~~g~~~~~v~~~~~~~~~~~~~~~ 239 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPGDVMDDDLLN 239 (368)
T ss_dssp HTTGGGTTCEEEEETTTTCHHHHT
T ss_pred HcCCCcCCceEEecCcccCHHHHH
Confidence 87764 267777663 3334443
No 444
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=36.39 E-value=46 Score=26.96 Aligned_cols=50 Identities=10% Similarity=0.059 Sum_probs=34.5
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeChHHH
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~~av 114 (301)
....+++.|++.|+++.... +.+ +|.+.+.+.+.+. .++|.||.|-..++
T Consensus 50 n~~~L~~~L~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 50 SGPLVTELLTEAGFVVDGVV---AVE-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---EEC-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 34678889999998877543 332 3456676666543 57999998876665
No 445
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=36.38 E-value=1.9e+02 Score=24.86 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=16.8
Q ss_pred CCCEEEEEcCCcChhHHHHHHHhCCCeeEEEee
Q 022176 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (301)
Q Consensus 177 ~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (301)
.+.+|++....-....+...++..|+++..+++
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 345666665544332244555556665555443
No 446
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=36.37 E-value=1.5e+02 Score=25.59 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=29.5
Q ss_pred CceEEEECHHHHHHHHHcCCCeeE----ecCCCCHHHHHHHHHH
Q 022176 254 SNSVACIGETTASAAKRLGLKNVY----YPTHPGLEGWVDSILE 293 (301)
Q Consensus 254 ~~~i~aIG~~Ta~al~~~G~~~~~----v~~~ps~e~ll~ai~~ 293 (301)
+..+++||.+....+++.|..... +.+.|+.+.....+..
T Consensus 111 ~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~ 154 (286)
T 3oaa_G 111 QCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKV 154 (286)
T ss_dssp EEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHH
T ss_pred ceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHH
Confidence 577999999999999988886532 2456888776654443
No 447
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=36.33 E-value=1.4e+02 Score=25.01 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
..+.+.|++.|+.++.+|... +.+ +.+.+ ..+|.||++-..
T Consensus 31 ~~~~~~l~~aG~~pv~lp~~~-----~~~-~~~~l---~~~DGlil~GG~ 71 (254)
T 3fij_A 31 QRYVDAIQKVGGFPIALPIDD-----PST-AVQAI---SLVDGLLLTGGQ 71 (254)
T ss_dssp HHHHHHHHHHTCEEEEECCCC-----GGG-HHHHH---HTCSEEEECCCS
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----chH-HHHHH---hhCCEEEECCCC
Confidence 457889999999999887643 212 44444 579999999873
No 448
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=36.16 E-value=1.3e+02 Score=24.80 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=26.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
..+.+++||||-... =+..+++.|.+.|++|..+
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 44 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTC 44 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 457789999998765 3568899999999987643
No 449
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=36.16 E-value=56 Score=24.88 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=48.5
Q ss_pred CEEEEEcCC----cChhHHHHHHHhCCCeeEEEeeeeeeeC--CCCcH-----HHHHHc-CCCC-EEEEEChHHHHHHHH
Q 022176 179 CTVLYPASA----KASNEIEEGLSNRGFEVVRLNTYTTEPV--HHVDQ-----TVLKQA-LSIP-VVAVASPSAVRSWVN 245 (301)
Q Consensus 179 ~~vLi~rg~----~~~~~L~~~L~~~G~~v~~~~vY~~~~~--~~~~~-----~~~~~~-~~~d-~I~ftS~sav~~~~~ 245 (301)
++|.++... .-...+.+.|.+.|++ +|-..+. ..... .-+.++ ..+| +++++.+..+...++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~-----v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~ 88 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR-----VLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLP 88 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE-----EEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHH
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE-----EEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHHHHHHHH
Confidence 688888763 2234677778888875 4443332 11000 001122 4678 455556666666665
Q ss_pred hhhcccCCCceEEE---ECHHHHHHHHHcCCCe
Q 022176 246 LISDTEQWSNSVAC---IGETTASAAKRLGLKN 275 (301)
Q Consensus 246 ~l~~~~~~~~~i~a---IG~~Ta~al~~~G~~~ 275 (301)
.+.+.+. ...++. .-....+.+++.|++.
T Consensus 89 ~~~~~gi-~~i~~~~g~~~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 89 EVLALRP-GLVWLQSGIRHPEFEKALKEAGIPV 120 (140)
T ss_dssp HHHHHCC-SCEEECTTCCCHHHHHHHHHTTCCE
T ss_pred HHHHcCC-CEEEEcCCcCHHHHHHHHHHcCCEE
Confidence 5444332 111211 1367788888889875
No 450
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=36.14 E-value=78 Score=26.85 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCC-c-cEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-F-DWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~-~-d~Ii--ftS~~av~~f~~~ 120 (301)
.++.|+++|||-... =+..+++.|.+.|++|+.+-. .. +..+.+.+.+..... . .++. +++..+++.+++.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r---~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 104 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGR---RP-DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAA 104 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---CH-HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC---CH-HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467899999998764 456899999999998765321 10 011222222211111 1 1221 4788899888877
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 105 ~~~ 107 (281)
T 4dry_A 105 VRA 107 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 451
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=36.13 E-value=48 Score=28.15 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=36.4
Q ss_pred CCEEEEEcCC--cChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEECh
Q 022176 178 KCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 178 ~~~vLi~rg~--~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.++|+++... ..-..+.+.|++.|+++..+.+|...+.+.. +.++|.|+++-.
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~-------~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAE-------IRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSC-------GGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCc-------cccCCEEEECCC
Confidence 3678888644 4467889999999999888777764322211 346888888743
No 452
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=36.07 E-value=1.1e+02 Score=21.26 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=64.1
Q ss_pred CEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHhhhccc
Q 022176 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISDTE 251 (301)
Q Consensus 179 ~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS----~sav~~~~~~l~~~~ 251 (301)
.+||++..+.. +..+.+.|+..|++|. .+.. ..+.++.+ ..+|+|++-- ......+++.++...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~~------~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~ 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVD---ETTD------GKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDD 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEE---EECC------HHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHST
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEE---EecC------HHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCc
Confidence 47888877754 5678888988887553 1111 12222222 3688888642 112234455554431
Q ss_pred -CCCceEEEECHHH---HHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 252 -QWSNSVACIGETT---ASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 252 -~~~~~i~aIG~~T---a~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
..+++++.++... ...+.+.|... ++....+.+.|.+.|...++.+
T Consensus 77 ~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 77 DLKNVPIVIIGNPDGFAQHRKLKAHADE-YVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp TTTTSCEEEEECGGGHHHHHHSTTCCSE-EEESSCCHHHHHHHHHHHHCCC
T ss_pred cccCCCEEEEecCCchhHHHHHHhCcch-heeCCCCHHHHHHHHHHHHcCC
Confidence 2356666664332 23334467654 5677779999999998877643
No 453
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=35.57 E-value=94 Score=24.51 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC
Q 022176 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS 236 (301)
Q Consensus 164 ~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS 236 (301)
-+.|.+.+......++-++|.......+.+.+.|+..|..+..+ +...+.. .-..+++.+ +.+.+++-|+
T Consensus 33 ~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~l--hg~~~~~-~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 33 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSI--HGDRSQR-DREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEE--C---------CHHHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEE--eCCCCHH-HHHHHHHHHHcCCCeEEEEcC
Confidence 44455555544223344556666666788999999988765322 2222211 112233332 5667666664
No 454
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=35.15 E-value=1.6e+02 Score=24.42 Aligned_cols=62 Identities=16% Similarity=0.005 Sum_probs=32.1
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcH---HH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATG---KI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~---e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+.+.+.....+. .. +++.+..... .-+++...... ....+.|.+.|+.|..+.
T Consensus 30 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~~-~~~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 30 TDLELRAV------HRHVVVATGCGESTPREQALEAVRFLIGRDC--DGVVVISHDLH-DEDLDELHRMHPKMVFLN 97 (290)
T ss_dssp HHHHHHHT------TCEEEEECCCSSSCHHHHHHHHHHHHHHTTC--SEEEECCSSSC-HHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHC------CCEEEEEeCCCchhhhhhHHHHHHHHHhcCc--cEEEEecCCCC-HHHHHHHhhcCCCEEEEc
Confidence 45666777 8877655433222 22 4455544321 23444333333 445567777788765543
No 455
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=35.10 E-value=1.2e+02 Score=21.61 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=67.5
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHh-CCCe-eEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEECh---HHHHHHHHhhhc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSN-RGFE-VVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP---SAVRSWVNLISD 249 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~-~G~~-v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~---sav~~~~~~l~~ 249 (301)
..+||++..+.. +..+.+.|+. .|++ |.... ...+.++. ...+|+|++--. ...-.+++.++.
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 78 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAY---------NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKS 78 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEEC---------SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEEC---------CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHh
Confidence 468998887765 5678888988 8876 32211 11222222 246898887532 122234445544
Q ss_pred c-cCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 250 T-EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 250 ~-~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
. ....++++.++. .....+.+.|... ++....+.+.|.+.|...++.+.
T Consensus 79 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 79 TPATANIIVIAMTGALTDDNVSRIVALGAET-CFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp STTTTTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHHTTC
T ss_pred CccccCCcEEEEeCCCCHHHHHHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHhhc
Confidence 2 123567766642 3334555678765 55677899999999999887654
No 456
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=34.98 E-value=1.7e+02 Score=28.88 Aligned_cols=92 Identities=20% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCCCCCeEEEeCC--C----CchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH-H-----
Q 022176 46 ASNSNPKVVVTRE--R----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-A----- 113 (301)
Q Consensus 46 ~~l~g~~IlitR~--~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~-a----- 113 (301)
.++.|++|+|.-. . .+...+.+.|++.|++|..+-.-. ....|. .+.. . ....||.||+.... +
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~-g~~vD~-t~~~-~-~s~~fDAVvlPGG~~g~~~~~ 600 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERX-ANNVDE-TYSA-S-DAVQFDAVVVADGAEGLFGAD 600 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSC-CTTCCE-ESTT-C-CGGGCSEEEECTTCGGGCCTT
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccC-Cccccc-chhc-C-CccccCeEEecCCCccccccc
Confidence 4577899988765 3 244677889999999998876621 112221 1111 0 23579999998873 3
Q ss_pred --------------------HHHHHHHHHHcCCCCceEEEEchhhHHHHHHH
Q 022176 114 --------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (301)
Q Consensus 114 --------------------v~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~ 145 (301)
+..|+....+ .+..|++||.+.. +|.+.
T Consensus 601 ~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap~-vL~~a 648 (688)
T 2iuf_A 601 SFTVEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGSD-ALESG 648 (688)
T ss_dssp TTTCCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGHH-HHHHT
T ss_pred ccccccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchHH-HHHHc
Confidence 2223332222 3688999998864 88888
No 457
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=34.97 E-value=34 Score=30.09 Aligned_cols=62 Identities=6% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+.-..-.+...++..|+++..+|+ ......|.+.+++.+... +...|++++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~d~~~l~~~l~~~-~~~~v~~~~~~ 153 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEG-PPDRPFSLETLARAIELH-QPKCLFLTHGD 153 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-CTTSCCCHHHHHHHHHHH-CCSEEEEESEE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecC-CCCCCCCHHHHHHHHHhC-CCCEEEEECCC
No 458
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.95 E-value=1.1e+02 Score=21.18 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=49.7
Q ss_pred CEEEEEChHHHHHHHHhhhcccCCCceEEEECHH------HHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHccC
Q 022176 230 PVVAVASPSAVRSWVNLISDTEQWSNSVACIGET------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 299 (301)
Q Consensus 230 d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~~------Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~~ 299 (301)
-+-.-||+..++.+.+.++.++ ..+.+++-|.. -.+.+++.|+.-++ -...++|.|-+.+.++++..|
T Consensus 30 yirtatssqdirdiiksmkdng-kplvvfvngasqndvnefqneakkegvsydv-lkstdpeeltqrvreflktag 103 (112)
T 2lnd_A 30 YIRTATSSQDIRDIIKSMKDNG-KPLVVFVNGASQNDVNEFQNEAKKEGVSYDV-LKSTDPEELTQRVREFLKTAG 103 (112)
T ss_dssp TEEEECSHHHHHHHHHHHTTCC-SCEEEEECSCCHHHHHHHHHHHHHHTCEEEE-EECCCHHHHHHHHHHHHHHTT
T ss_pred eeeeccchhhHHHHHHHHHhcC-CeEEEEecCcccccHHHHHHHHHhcCcchhh-hccCCHHHHHHHHHHHHHhcc
Confidence 3567799999999999887754 24556666643 23456677887655 466789999999999998765
No 459
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=34.93 E-value=74 Score=28.20 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=42.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.+++|||+-...-+..++..++++|++++.+-... ..+..|.+.+.+.+++ .+.|.|+..+-.....
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~-~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVEL-EKPHYIVPEIEAIATD 88 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHH-HCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHH-cCCCEEEECCCcCCHH
Confidence 46899999655446788999999999887653310 1111233344444322 4678887755332222
Q ss_pred HHHHHHH
Q 022176 117 FLEAWKE 123 (301)
Q Consensus 117 f~~~l~~ 123 (301)
+...+.+
T Consensus 89 ~~~~l~~ 95 (391)
T 1kjq_A 89 MLIQLEE 95 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344444
No 460
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=34.90 E-value=66 Score=26.41 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCeEEEeCCCC-------chHHHHHHHHhC-CCcEEEeceeEeeeCC-Cc----hHHHHHHhcCCCccEEEEeChHHHHH
Q 022176 50 NPKVVVTRERG-------KNGKLIKALAKH-RIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDWIIITSPEAGSV 116 (301)
Q Consensus 50 g~~IlitR~~~-------~~~~l~~~L~~~-G~~v~~~P~~~~~~~~-d~----~~l~~~l~~l~~~d~IiftS~~av~~ 116 (301)
.++|++..... +..-+.+.++++ |.++.. +.... +. +.+.+.|..-.+.|+|+.++-..+..
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g 201 (276)
T 3ksm_A 127 ERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA-----APYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIG 201 (276)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE-----CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHH
T ss_pred CceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE-----EecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhH
Confidence 35677665332 223455666666 655542 11111 21 34455555556789999888887777
Q ss_pred HHHHHHHcCC-CCceEEEEchhh
Q 022176 117 FLEAWKEAGT-PNVRIGVVGAGT 138 (301)
Q Consensus 117 f~~~l~~~~~-~~~~i~avG~~T 138 (301)
.++.+.+.++ +++.++..+...
T Consensus 202 ~~~al~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 202 ALVAIRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp HHHHHHHTTCTTSSEEEEESCCH
T ss_pred HHHHHHHcCCCCCeEEEEeCCCH
Confidence 8888888886 577888877643
No 461
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=34.86 E-value=1.3e+02 Score=21.94 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEECh---HHHHHHHHhhhcc
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
++.+||++-.+.. +..|.+.|++.|... .+..+. ...+.++.+ ..+|+|++--. ...-.+++.++..
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~-~v~~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 86 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVN-VVGEAD------DGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY 86 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEE-EEEEES------SHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeE-EEEEeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4578999988764 567888898887421 111111 112222222 46888887421 2223344444433
Q ss_pred cCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 251 EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 251 ~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
. ...+++.++. .....+.+.|... ++....+.+.|.++|...++..
T Consensus 87 ~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 87 E-LPTRVLLISAHDEPAIVYQALQQGAAG-FLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp T-CSCEEEEEESCCCHHHHHHHHHTTCSE-EEETTCCHHHHHHHHHHHHHCC
T ss_pred C-CCCeEEEEEccCCHHHHHHHHHcCCCE-EEecCCCHHHHHHHHHHHHcCC
Confidence 2 2556666543 3444566788765 6677789999999999887654
No 462
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=34.74 E-value=95 Score=27.14 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=23.2
Q ss_pred ccccccCCCCCC---CeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 39 SDATSASASNSN---PKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 39 ~~~~~~~~~l~g---~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
++++-.++...| ++||||-..+ -+..+++.|.+.|++|..+
T Consensus 10 ~~~~~~~~~~~~~M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 54 (375)
T 1t2a_A 10 HSSGRENKYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGI 54 (375)
T ss_dssp --------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccchhhHhhcCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 334444566555 5899998765 4568889999999988764
No 463
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=34.67 E-value=1.1e+02 Score=25.52 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=45.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEe------eeCCCchHHHHH---HhcCCCccEEE----EeCh
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQH------AQGPDTDRLSSV---LNADTIFDWII----ITSP 111 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~------~~~~d~~~l~~~---l~~l~~~d~Ii----ftS~ 111 (301)
..+.|+++|||-... =...+++.|.++|++|+.+-.-.. ....+.+.+.+. +... .....+ +++.
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~ 85 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-NRRIVAAVVDTRDF 85 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCCCH
Confidence 467899999998765 357899999999999876422100 000122233322 2222 122222 4788
Q ss_pred HHHHHHHHHHHH
Q 022176 112 EAGSVFLEAWKE 123 (301)
Q Consensus 112 ~av~~f~~~l~~ 123 (301)
.+++.+++.+.+
T Consensus 86 ~~v~~~~~~~~~ 97 (277)
T 3tsc_A 86 DRLRKVVDDGVA 97 (277)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888876654
No 464
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=34.53 E-value=39 Score=29.10 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=40.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+......+...++..|+++..+|+-. ....|.+.+++.+.+-.+...|++++++
T Consensus 79 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (366)
T 1m32_A 79 PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNADPTISHIAMVHSE 141 (366)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcCCCeEEEEEeccc
Confidence 46678877644333445666777899999888632 2223556777777543346678787776
No 465
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=34.53 E-value=36 Score=29.92 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=40.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.+.. .+...|++++++
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~~v~~~~~~ 154 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQSLSLDEIRDALLI-HKPSVLFLTQGD 154 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CCCCCHHHHHHHHhc-cCCcEEEEEccC
Confidence 57789999876544345556677899999888632 112355667776632 146788888765
No 466
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=34.42 E-value=1.5e+02 Score=22.35 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=55.7
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEchhhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEc-CC
Q 022176 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SA 187 (301)
Q Consensus 109 tS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~r-g~ 187 (301)
.|+..++...+.+...+.+++.+ ..|.... .+.+. .+...+.......+.+++.+.+. .++.+++.. ..
T Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~-~~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 65 YLDGAIEVTKQNLAKFNIKNCQI-IKGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CSHHHHHHHHHHHHHTTCCSEEE-EESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHcCCCcEEE-EECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 36777776666666655545444 3444433 33332 45544432224566777777766 567776655 44
Q ss_pred cChhHHHHHHHhCCCeeEEEeeeee
Q 022176 188 KASNEIEEGLSNRGFEVVRLNTYTT 212 (301)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (301)
.....+.+.|++.|..+..+.....
T Consensus 135 ~~~~~~~~~l~~~g~~~~~~~~~~~ 159 (183)
T 2yxd_A 135 ENAAKIINEFESRGYNVDAVNVFIS 159 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccHHHHHHHHHHcCCeEEEEEeeee
Confidence 4456789999999988776654433
No 467
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=34.40 E-value=52 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=16.7
Q ss_pred CCCEEEEEcCC--cC-hhHHHHHHHhCCCee
Q 022176 177 KKCTVLYPASA--KA-SNEIEEGLSNRGFEV 204 (301)
Q Consensus 177 ~~~~vLi~rg~--~~-~~~L~~~L~~~G~~v 204 (301)
+++++|+..+. .+ ...+.+.|.+.|++|
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V 43 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAEL 43 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCE
Confidence 45666666654 22 455667777777655
No 468
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=34.39 E-value=1.8e+02 Score=24.74 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=45.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~~ 120 (301)
..+.|++||||-... =+..+++.|.+.|++|+.+- ......+.+.+.+.........+ +++..+++.+++.
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~----r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA----RSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE----SSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE----CCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 457899999998765 45689999999999877542 11112233334443322122222 3688888888876
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 113 ~~~ 115 (293)
T 3rih_A 113 VVD 115 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 469
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=34.27 E-value=40 Score=27.51 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (301)
..+.||+||||-..+ -+..+++.|.+.|++|..+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 578899999998754 5578999999999987754
No 470
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=34.11 E-value=1.3e+02 Score=24.42 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=42.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCC-Cc-cEEE--EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IF-DWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~-~~-d~Ii--ftS~~av~~f~~~ 120 (301)
.++.|++||||-... =+..+++.|.+.|++|..+-. +.+.++...+.++ .. .++. +++..+++.+++.
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r-------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDR-------EAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAE 79 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC-------CHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHH
Confidence 357789999998765 356899999999998765321 1122222222221 11 1121 3678888887776
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 80 ~~~ 82 (254)
T 2wsb_A 80 AEA 82 (254)
T ss_dssp HHH
T ss_pred HHh
Confidence 655
No 471
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=34.00 E-value=1.9e+02 Score=23.47 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=63.4
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHH
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~ 122 (301)
..+++|||.-... -...+...|+..|+++... .+..+..+.+.. ..+|.|++- ..++.+ +++.+.
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~-~~~~lr 90 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTA--------TNGAQALDRARE-TRPDAVILDVXMPGMDGFG-VLRRLR 90 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 3467899987664 4457778888889765421 122333333422 468988874 234555 455566
Q ss_pred HcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 123 EAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 123 ~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
+.. .+++++++.. .......+.+.. |.. +++..+.+.+.|...+..
T Consensus 91 ~~~-~~~~ii~lt~~~~~~~~~~~~~~---Ga~-~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 91 ADG-IDAPALFLTARDSLQDKIAGLTL---GGD-DYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp HTT-CCCCEEEEECSTTHHHHHHHHTS---TTC-EEEESSCCHHHHHHHHHH
T ss_pred hcC-CCCCEEEEECCCCHHHHHHHHHc---CCc-EEEeCCCCHHHHHHHHHH
Confidence 543 3566655544 333333333211 543 466677888888777643
No 472
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=34.00 E-value=37 Score=28.57 Aligned_cols=73 Identities=10% Similarity=-0.001 Sum_probs=41.9
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022176 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (301)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~ 120 (301)
...++.|++||||-... =+..+++.|.+.|++|+.+-. .. +.+.+.+...+ ..++. +++..+++.+++.
T Consensus 21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-----~~--~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~ 92 (260)
T 3gem_A 21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYR-----TE--HASVTELRQAG-AVALYGDFSCETGIMAFIDL 92 (260)
T ss_dssp ------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES-----SC--CHHHHHHHHHT-CEEEECCTTSHHHHHHHHHH
T ss_pred cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC-----Ch--HHHHHHHHhcC-CeEEECCCCCHHHHHHHHHH
Confidence 34678899999998764 456899999999999875421 11 12222332222 22221 4688888888877
Q ss_pred HHHc
Q 022176 121 WKEA 124 (301)
Q Consensus 121 l~~~ 124 (301)
+.+.
T Consensus 93 ~~~~ 96 (260)
T 3gem_A 93 LKTQ 96 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 473
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=33.97 E-value=1.4e+02 Score=21.86 Aligned_cols=109 Identities=9% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHc
Q 022176 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (301)
Q Consensus 50 g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Iift----S~~av~~f~~~l~~~ 124 (301)
+++|||.-.... ...+...|+ .|+++.. ..+..+....+.+...||.|++- ..++.+ +++.+.+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~~~~v~~--------~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-FDFEVTT--------CESGPEALACIKKSDPFSVIMVDMRMPGMEGTE-VIQKARLI 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-TTSEEEE--------ESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-cCceEEE--------eCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHH-HHHHHHhc
Confidence 578998876543 345566664 4755432 12333344455444558998874 334555 45556554
Q ss_pred CCCCceEEEEc-hhhHHHHHHHhhcccCC-CceeecCCCCcHHHHHHHhcc
Q 022176 125 GTPNVRIGVVG-AGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 125 ~~~~~~i~avG-~~Ta~~L~~~~~~~~~G-~~~~~~p~~~~~e~L~~~l~~ 173 (301)
. ++.+++++. ........+.+.. | .. +++..+.+.+.|...+..
T Consensus 74 ~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~L~~~i~~ 119 (151)
T 3kcn_A 74 S-PNSVYLMLTGNQDLTTAMEAVNE---GQVF-RFLNKPCQMSDIKAAINA 119 (151)
T ss_dssp C-SSCEEEEEECGGGHHHHHHHHHH---TCCS-EEEESSCCHHHHHHHHHH
T ss_pred C-CCcEEEEEECCCCHHHHHHHHHc---CCee-EEEcCCCCHHHHHHHHHH
Confidence 3 456666654 4443333332211 4 43 356667788888777754
No 474
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=33.95 E-value=1.2e+02 Score=25.15 Aligned_cols=74 Identities=14% Similarity=-0.009 Sum_probs=45.0
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii----ftS~~av~~f~~~ 120 (301)
..+.|++||||-... =...+++.|.++|++|+.+-. . .+..+.+.+.+.........+ +++..+++.+++.
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r---~-~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGR---S-TADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES---C-HHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---C-HHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 357899999998764 356899999999998765311 0 011122233333332123333 3688888888876
Q ss_pred HHH
Q 022176 121 WKE 123 (301)
Q Consensus 121 l~~ 123 (301)
+.+
T Consensus 82 ~~~ 84 (262)
T 3pk0_A 82 AVE 84 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 475
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=33.95 E-value=52 Score=23.55 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=24.2
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEE
Q 022176 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLE 78 (301)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~ 78 (301)
+...+-|++++...++...+..|+++|++++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~ 85 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVN 85 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEE
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEE
Confidence 43445566788777888889999999998753
No 476
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=33.86 E-value=1.3e+02 Score=21.48 Aligned_cols=109 Identities=6% Similarity=-0.007 Sum_probs=62.7
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCC-CeeEEEeeeeeeeCCCCcHHHHHH--cCCCCEEEEECh---HHHHHHHHhhhcc
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP---SAVRSWVNLISDT 250 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~I~ftS~---sav~~~~~~l~~~ 250 (301)
..+||++-.+.. +..+.+.|++.| ++|.. +... .+.++. -..+|+|++-.. ...-.+++.++..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~---~~~~------~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 84 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRV---SETD------DFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARAL 84 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEE---ECGG------GGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGG
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEE---eccH------HHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhh
Confidence 358999888765 567888999988 65532 2211 111111 146888877422 1111233333332
Q ss_pred cCCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 251 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 251 ~~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
. .+++++.++ +.....+.+.|... ++....+.+.|...|...++.
T Consensus 85 ~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 85 W-ATVPLIAVSDELTSEQTRVLVRMNASD-WLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp G-TTCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTC--
T ss_pred C-CCCcEEEEeCCCCHHHHHHHHHcCcHh-hccCCCCHHHHHHHHHHHhcc
Confidence 2 255666553 33445556678765 667778999999999877643
No 477
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=33.80 E-value=72 Score=27.83 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=78.3
Q ss_pred HHHHHhCCCcEEEeceeEeeeCCCchHHHHHH---hcCCCccEEEEeChHH--H--HHHHHHHHHc-CCCCceEEEEchh
Q 022176 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKEA-GTPNVRIGVVGAG 137 (301)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l---~~l~~~d~IiftS~~a--v--~~f~~~l~~~-~~~~~~i~avG~~ 137 (301)
.+.+++.|++...+-+-. ....+++.+.+ +.....|.|++--|-- + +..++.+... ..|++. +.
T Consensus 55 ~k~~~~~Gi~~~~~~lp~---~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDG~~-----p~ 126 (288)
T 1b0a_A 55 RKACEEVGFVSRSYDLPE---TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFH-----PY 126 (288)
T ss_dssp HHHHHHHTCEECCEEECT---TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTTTCTTCCS-----HH
T ss_pred HHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCccCcccCC-----cc
Confidence 345777788776443211 11223444444 4457788988876521 1 1112111100 012322 22
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhccCC--CCCCEEEEEcCCc-ChhHHHHHHHhCCCeeEEEeeeeeee
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEP 214 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~--~~~~~vLi~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (301)
-...|- . |-. .+.| -|++++++.|.... ..+++++++.... -...+...|...|++|+.+.-..
T Consensus 127 n~g~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--- 193 (288)
T 1b0a_A 127 NVGRLC-Q------RAP-RLRP--CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--- 193 (288)
T ss_dssp HHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---
T ss_pred chhHHh-C------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---
Confidence 222221 1 422 2444 46788877776554 3788998887775 46779999999999887664211
Q ss_pred CCCCcHHHHHHcCCCCEEEEECh
Q 022176 215 VHHVDQTVLKQALSIPVVAVASP 237 (301)
Q Consensus 215 ~~~~~~~~~~~~~~~d~I~ftS~ 237 (301)
.. +.+...+.|+|+-+.+
T Consensus 194 --~~---L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 194 --KN---LRHHVENADLLIVAVG 211 (288)
T ss_dssp --SC---HHHHHHHCSEEEECSC
T ss_pred --hh---HHHHhccCCEEEECCC
Confidence 11 2222346788877766
No 478
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=33.78 E-value=1.2e+02 Score=24.90 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHHH
Q 022176 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (301)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~l~~ 123 (301)
.+.|++||||-... =+..+++.|.+.|++|..+- ..++.+.+.+.+ .. .++. +++..+++.+++.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~-----r~~~~~~~~~~~---~~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCD-----LRPEGKEVAEAI---GG-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-----SSTTHHHHHHHH---TC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe-----CChhHHHHHHHh---hC-CEEEeeCCCHHHHHHHHHHHHH
Confidence 46789999998764 35689999999999876431 111212222222 22 2221 3677888877766543
No 479
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=33.72 E-value=22 Score=27.92 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH--------HHHHHHHHHH---cCCCCceEE
Q 022176 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKE---AGTPNVRIG 132 (301)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a--------v~~f~~~l~~---~~~~~~~i~ 132 (301)
.+++.|.+.|+++..+++-+ . +. ..+..+|.|||-++.= ++.|++.+.. ..+.+.+++
T Consensus 29 ~ia~~l~~~g~~v~~~~~~~---~-~~-------~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~~l~~~~~~~l~~k~~a 97 (167)
T 1ykg_A 29 ALRDDLLAAKLNVKLVNAGD---Y-KF-------KQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFA 97 (167)
T ss_dssp HHHHHHHHHTCCCEEEEGGG---C-CG-------GGGGGCSEEEEEEECBGGGBCCGGGHHHHHHHTSTTCCCCTTCEEE
T ss_pred HHHHHHHHCCCceEEeehhh---C-CH-------HHhccCCeEEEEEcccCCCcCChhHHHHHHHHHhccccccCCCEEE
Confidence 34445555677665443311 1 11 1345688888866533 5667777653 224466676
Q ss_pred EEc
Q 022176 133 VVG 135 (301)
Q Consensus 133 avG 135 (301)
+.|
T Consensus 98 vfg 100 (167)
T 1ykg_A 98 VFS 100 (167)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 480
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=33.71 E-value=1.6e+02 Score=25.65 Aligned_cols=13 Identities=0% Similarity=-0.043 Sum_probs=6.5
Q ss_pred EEEECHHHHHHHH
Q 022176 257 VACIGETTASAAK 269 (301)
Q Consensus 257 i~aIG~~Ta~al~ 269 (301)
+++..+...+.++
T Consensus 231 ~l~~~~~~~~~~~ 243 (393)
T 1vjo_A 231 PFTMSSRAIEKLQ 243 (393)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEEECHHHHHHHh
Confidence 4444555555554
No 481
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=33.60 E-value=1.3e+02 Score=21.32 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=63.8
Q ss_pred CCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc---------CCCCEEEEEC----hHHHHHH
Q 022176 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---------LSIPVVAVAS----PSAVRSW 243 (301)
Q Consensus 178 ~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---------~~~d~I~ftS----~sav~~~ 243 (301)
+.+||++-.+.. +..+.+.|+..|.... +..+.+ ..+.++.+ ..+|+|++-- ..+. .+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~~------~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~-~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE-VVTVRD------GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGR-EV 73 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEECS------HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHH-HH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEECC------HHHHHHHHHcccccccCCCCcEEEEecCCCcccHH-HH
Confidence 468888887765 5678889998886321 112111 12223322 3588887632 1222 33
Q ss_pred HHhhhccc-CCCceEEEEC----HHHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHc
Q 022176 244 VNLISDTE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 297 (301)
Q Consensus 244 ~~~l~~~~-~~~~~i~aIG----~~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~ 297 (301)
++.++... ..+++++.++ ......+.+.|... ++....+.+.|.+.|...++.
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNC-YITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE-EEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhh-eecCCCCHHHHHHHHHHHHHH
Confidence 44444322 1245665553 23444555678865 567777999999988887654
No 482
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=33.47 E-value=53 Score=25.34 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=24.8
Q ss_pred cCCCccEEEEeChH-H-------HHHHHHHHHHcCCCCceEEEEch
Q 022176 99 ADTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVGA 136 (301)
Q Consensus 99 ~l~~~d~IiftS~~-a-------v~~f~~~l~~~~~~~~~i~avG~ 136 (301)
++..||.|||-||. . ++.|++.+....+.+.+++++|-
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~t 88 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGT 88 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEE
Confidence 45789999998876 2 45566655444455666666554
No 483
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=33.42 E-value=64 Score=25.38 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=36.1
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeE---eeeCCCchHHHHHHhcCCCccEEEEeC
Q 022176 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ---HAQGPDTDRLSSVLNADTIFDWIIITS 110 (301)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~---~~~~~d~~~l~~~l~~l~~~d~IiftS 110 (301)
|+||||-... =+..+++.|. +|+++..+-.-. .....+.+.+.+.++..+..|.||...
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 4899998765 3568888898 899887542210 111223445555554445667776654
No 484
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.36 E-value=1.3e+02 Score=21.48 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=60.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeC------hHHHHHHHHHHH
Q 022176 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS------PEAGSVFLEAWK 122 (301)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS------~~av~~f~~~l~ 122 (301)
.++|||.-... ....+...|++.|+++.... +..+....+ .-..+|.|++-- .++.+ +++.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~~~g~~-~~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA--------SAESFMRQQ-ISDDAIGMIIEAHLEDKKDSGIE-LLETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--------SHHHHTTSC-CCTTEEEEEEETTGGGBTTHHHH-HHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--------CHHHHHHHH-hccCCCEEEEeCcCCCCCccHHH-HHHHHH
Confidence 46898887654 44567788888887654221 212111122 224688877642 34544 556666
Q ss_pred HcCCCCceEEEEch-hhHHHHHHHhhcccCCCceeecCCCCcHHHHHHHhcc
Q 022176 123 EAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (301)
Q Consensus 123 ~~~~~~~~i~avG~-~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~ 173 (301)
+.. ++++++++.. .......+.+.. |.. ++...+.+.+.|...+.+
T Consensus 76 ~~~-~~~~ii~~s~~~~~~~~~~~~~~---ga~-~~l~KP~~~~~l~~~i~~ 122 (136)
T 3kto_A 76 KRG-FHLPTIVMASSSDIPTAVRAMRA---SAA-DFIEKPFIEHVLVHDVQQ 122 (136)
T ss_dssp HTT-CCCCEEEEESSCCHHHHHHHHHT---TCS-EEEESSBCHHHHHHHHHH
T ss_pred hCC-CCCCEEEEEcCCCHHHHHHHHHc---ChH-HheeCCCCHHHHHHHHHH
Confidence 654 4666666543 333333332211 554 356677888888877654
No 485
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=33.30 E-value=58 Score=28.39 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=36.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~ 112 (301)
.|.+|++..|.-. .....++..|+++..+| .|.+.+++.+. .+...|++++++
T Consensus 112 ~gd~vl~~~p~~~--~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~--~~~~~v~~~~p~ 164 (370)
T 2z61_A 112 DGDEVLIQNPCYP--CYKNFIRFLGAKPVFCD-------FTVESLEEALS--DKTKAIIINSPS 164 (370)
T ss_dssp TTCEEEEESSCCT--HHHHHHHHTTCEEEEEC-------SSHHHHHHHCC--SSEEEEEEESSC
T ss_pred CCCEEEEeCCCch--hHHHHHHHcCCEEEEeC-------CCHHHHHHhcc--cCceEEEEcCCC
Confidence 4778999988753 34556777899998888 35566666652 256778888665
No 486
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=33.27 E-value=68 Score=25.62 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=32.7
Q ss_pred hHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhc-CCC--ccEEEEeChHHH
Q 022176 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTI--FDWIIITSPEAG 114 (301)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~-l~~--~d~IiftS~~av 114 (301)
...+++.|++.|+++.... +.+ +|.+.+.+.+.+ +.. +|.||.|-..++
T Consensus 42 ~~~L~~~l~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYS---LVP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEE---EEC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 3578889999999877533 333 345666666644 344 899988866554
No 487
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=33.17 E-value=1.2e+02 Score=26.99 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=125.3
Q ss_pred CceeeeeeccCCCCCCccchhhhhCCCCC--------CCCccccccccccccCCCCCCCeEEEeCCCC--chHHHH----
Q 022176 1 MAQVSLFSLSSPFPASAVSSRLRLNRPLP--------FQFSRIQASSDATSASASNSNPKVVVTRERG--KNGKLI---- 66 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~--~~~~l~---- 66 (301)
|..+-+|+.++.++....=+. .++..+- +.-...++ ..+.+|+.|.+..+.. .++.+.
T Consensus 1 m~~~~if~g~~~~~La~~ia~-~lg~~l~~~~~~~F~dGE~~v~i-------~esvrg~dV~iiqs~~~p~nd~lmeLl~ 72 (326)
T 3s5j_B 1 MPNIKIFSGSSHQDLSQKIAD-RLGLELGKVVTKKFSNQETCVEI-------GESVRGEDVYIVQSGCGEINDNLMELLI 72 (326)
T ss_dssp --CEEEEECSSCCHHHHHHHH-HTTCCCCCEEEEECTTSCEEEEE-------CSCCTTCEEEEECCCCSCHHHHHHHHHH
T ss_pred CCceEEEECCCCHHHHHHHHH-HhCCceeeeEEeECCCCCEEEEE-------CCCcCCCcEEEEecCCCCccHHHHHHHH
Confidence 667788998888765432222 2233332 11122222 2478899988877653 245444
Q ss_pred --HHHHhCCCcEEE--eceeEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEchhhHHHH
Q 022176 67 --KALAKHRIDCLE--LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (301)
Q Consensus 67 --~~L~~~G~~v~~--~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~av~~f~~~l~~~~~~~~~i~avG~~Ta~~L 142 (301)
.+|++.|+.-+. +|.+-.-. .|. +...-+ +-+.+.+.+.+...|. -+++++-....+ +
T Consensus 73 ~idA~k~asA~rIt~ViPY~~YaR-QDr--------~~~~re------pisak~vA~lL~~~G~--drvit~DlH~~q-i 134 (326)
T 3s5j_B 73 MINACKIASASRVTAVIPCFPYAR-QDK--------KDKSRA------PISAKLVANMLSVAGA--DHIITMDLHASQ-I 134 (326)
T ss_dssp HHHHHHHTTCSEEEEEESSCTTTT-CCS--------CTTSSC------CCHHHHHHHHHHHHTC--SEEEEESCSSGG-G
T ss_pred HHHHHHhcCCcEEEEeccCccccc-cCC--------cCCCCC------CEeHHHHHHHHHHcCC--CEEEEEeCCChH-H
Confidence 456677765442 33332211 111 111111 2345556666665554 378888887643 2
Q ss_pred HHHhhcccCCCceeecCCCCcHHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHh-CCCeeEEEeeeeeeeCCCCcHH
Q 022176 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSN-RGFEVVRLNTYTTEPVHHVDQT 221 (301)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~ 221 (301)
+.+ +.++++-. +....|++.+.+.....+..+++..+.+.-.+...|.+ .|..+..+.-++..+.+.....
T Consensus 135 qgf-----F~ipvd~l---~a~p~l~~~i~~~~~~~~~~vVVspd~Ggv~~A~~lA~~L~~~~~~i~K~r~~~~~v~~~~ 206 (326)
T 3s5j_B 135 QGF-----FDIPVDNL---YAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMV 206 (326)
T ss_dssp GGG-----CSSCEEEE---CSHHHHHHHHHHHCTTGGGCEEEESSGGGHHHHHHHHHHHTCEEEEEEEC-------CCEE
T ss_pred Hhh-----cCCceece---EcHHHHHHHHHHhcCcCCCcEEEEECCCchHHHHHHHHHcCCCEEEEEEEecCCCeeeEEe
Confidence 333 25555432 23455667776533222467777777776555544443 3555544433321111100000
Q ss_pred HHHHcCCCCEEE----EEChHHHHHHHHhhhcccCCCceEEEE----CHHHHHHHHHcCCCeeEecC
Q 022176 222 VLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVACI----GETTASAAKRLGLKNVYYPT 280 (301)
Q Consensus 222 ~~~~~~~~d~I~----ftS~sav~~~~~~l~~~~~~~~~i~aI----G~~Ta~al~~~G~~~~~v~~ 280 (301)
+......-++|+ ++++.++....+.+++.+...+.++|. .+...+.+++.++..+++.+
T Consensus 207 l~g~v~gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a~e~l~~~~i~~vv~t~ 273 (326)
T 3s5j_B 207 LVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTN 273 (326)
T ss_dssp EESCCTTSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHHHHSCCSEEEEET
T ss_pred ccccCCCCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchHHHHHhhCCCCEEEEec
Confidence 000112334443 588899999999888765444555553 35567788888888766544
No 488
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=33.01 E-value=55 Score=25.86 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=47.0
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeCh--HHHHHH------HHHHH
Q 022176 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVF------LEAWK 122 (301)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~--~av~~f------~~~l~ 122 (301)
++|.|+.-......+.+.|++.|+++..++. + + .+..+|.||++-. .....+ .+.+.
T Consensus 3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~------~--~-------~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 67 (191)
T 2ywd_A 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRK------K--E-------HLEGLKALIVPGGESTTIGKLAREYGIEDEVR 67 (191)
T ss_dssp CCEEEECSSSCHHHHHHHHHTTTCCCEEECS------G--G-------GGTTCSEEEECSSCHHHHHHHHHHTTHHHHHH
T ss_pred cEEEEEecCCchHHHHHHHHHCCCEEEEeCC------h--h-------hhccCCEEEECCCChhhhHHhhhhhhHHHHHH
Confidence 5677775555567899999999998876541 1 1 2456899999876 222221 12222
Q ss_pred HcCCCC-ceEEEEchhhHHHHHHH
Q 022176 123 EAGTPN-VRIGVVGAGTASIFEEV 145 (301)
Q Consensus 123 ~~~~~~-~~i~avG~~Ta~~L~~~ 145 (301)
+....+ .+++.|--+- +.|-..
T Consensus 68 ~~~~~~~~PilGiC~G~-Q~l~~~ 90 (191)
T 2ywd_A 68 KRVEEGSLALFGTCAGA-IWLAKE 90 (191)
T ss_dssp HHHHTTCCEEEEETHHH-HHHEEE
T ss_pred HHHHCCCCeEEEECHHH-HHHHHH
Confidence 111135 7888777663 444333
No 489
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.88 E-value=1.1e+02 Score=25.13 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=54.7
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHH
Q 022176 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (301)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~----~~l~~~l~~l~~~d~IiftS~~av~~f~~~ 120 (301)
.++|++..... +..-+.+.++++|..+...- .....+. +.+.+.|..-...|+|+.++-..+..+++.
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 194 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND---YLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGA 194 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC---CCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc---ccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHH
Confidence 34676655443 23456677888888766431 1111121 334555555567899999888887778888
Q ss_pred HHHcCC---CCceEEEEchhh
Q 022176 121 WKEAGT---PNVRIGVVGAGT 138 (301)
Q Consensus 121 l~~~~~---~~~~i~avG~~T 138 (301)
+.+.++ +++.++..+..-
T Consensus 195 l~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 195 ARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHTCCTTTTCEEEEESCCH
T ss_pred HHHcCCCCCCeeEEEEECCch
Confidence 888875 477888877644
No 490
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.81 E-value=2.1e+02 Score=23.66 Aligned_cols=136 Identities=11% Similarity=0.058 Sum_probs=64.1
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCc--HHHHHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEeeeeeeeC
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~--~e~L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (301)
..+++++. |+.+.+.....+ ....++.+.... -.-+++..... .....+.+.+ |+.|..+..+ ..
T Consensus 33 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~~~-~iPvV~i~~~---~~ 99 (289)
T 3k9c_A 33 IYAAATRR------GYDVMLSAVAPSRAEKVAVQALMRER--CEAAILLGTRF-DTDELGALAD-RVPALVVARA---SG 99 (289)
T ss_dssp HHHHHHHT------TCEEEEEEEBTTBCHHHHHHHHTTTT--EEEEEEETCCC-CHHHHHHHHT-TSCEEEESSC---CS
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHhCC--CCEEEEECCCC-CHHHHHHHHc-CCCEEEEcCC---CC
Confidence 45677787 888765433222 233444443321 12344443333 3355667776 8876444322 11
Q ss_pred CCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcccCCCceEEEECH-----------HHHHHHHHcCCC--eeEecCCC
Q 022176 216 HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE-----------TTASAAKRLGLK--NVYYPTHP 282 (301)
Q Consensus 216 ~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~~~~~~~i~aIG~-----------~Ta~al~~~G~~--~~~v~~~p 282 (301)
. ..++.|.+=...+.+...+++-+.+ +.+++.++. .-.+++++.|.. ..++....
T Consensus 100 ~----------~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 167 (289)
T 3k9c_A 100 L----------PGVGAVRGDDVAGITLAVDHLTELG--HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATVVTGGT 167 (289)
T ss_dssp S----------TTSEEEEECHHHHHHHHHHHHHHTT--CCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCS
T ss_pred C----------CCCCEEEeChHHHHHHHHHHHHHCC--CCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCccEEECCC
Confidence 1 1234455544455555444444332 223333321 112345555654 22344555
Q ss_pred CHHHHHHHHHHHHHcc
Q 022176 283 GLEGWVDSILEALREH 298 (301)
Q Consensus 283 s~e~ll~ai~~~~~~~ 298 (301)
+.+.-.+++.+++..+
T Consensus 168 ~~~~~~~~~~~~l~~~ 183 (289)
T 3k9c_A 168 TETEGAEGMHTLLEMP 183 (289)
T ss_dssp SHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHcCC
Confidence 6666666666666543
No 491
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=32.78 E-value=2.2e+02 Score=23.90 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHH
Q 022176 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (301)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~Ii--ftS~~av~~f~~~l~ 122 (301)
..|.||++|||-... =...++..|.+.|++++..-. ..++.+.++...+.-.+...+. +++...++.+++...
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFAR----HAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES----SCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEEC----CcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 468999999997764 346888999999999876431 1122222222222222332322 378899988887654
Q ss_pred H
Q 022176 123 E 123 (301)
Q Consensus 123 ~ 123 (301)
+
T Consensus 79 ~ 79 (258)
T 4gkb_A 79 A 79 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 492
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.75 E-value=1.1e+02 Score=22.37 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCEEEEEcCCcChh-----HHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHcCCCCEEEEEChHHHHHHHHhhhcc-c
Q 022176 178 KCTVLYPASAKASN-----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-E 251 (301)
Q Consensus 178 ~~~vLi~rg~~~~~-----~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~I~ftS~sav~~~~~~l~~~-~ 251 (301)
..+||++|+.+... .+.+..+++|.++.-..+ +.....+ ...++|+|++ +|.. +..++.+++. .
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~----~~~~~~~----~~~~~DvvLL-gPQV-~y~~~~ik~~~~ 75 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----AYGAHYD----IMGVYDLIIL-APQV-RSYYREMKVDAE 75 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEE----ETTSCTT----TGGGCSEEEE-CGGG-GGGHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEc----chHHHHh----hccCCCEEEE-ChHH-HHHHHHHHHHhh
Confidence 46899988888743 344555567876644331 1111111 1356887666 5554 3333333332 2
Q ss_pred CCCceEEEECHHHH
Q 022176 252 QWSNSVACIGETTA 265 (301)
Q Consensus 252 ~~~~~i~aIG~~Ta 265 (301)
..++++.+|-+...
T Consensus 76 ~~~ipV~vI~~~~Y 89 (108)
T 3nbm_A 76 RLGIQIVATRGMEY 89 (108)
T ss_dssp TTTCEEEECCHHHH
T ss_pred hcCCcEEEeCHHHh
Confidence 23688888887543
No 493
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=32.71 E-value=51 Score=28.51 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCC--CcEEEec------------------eeEeeeC--CCchHHHHHHhcCCCcc
Q 022176 48 NSNPKVVVTRERG-KNGKLIKALAKHR--IDCLELP------------------LIQHAQG--PDTDRLSSVLNADTIFD 104 (301)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G--~~v~~~P------------------~~~~~~~--~d~~~l~~~l~~l~~~d 104 (301)
..+|+||||-..+ -+..+++.|.+.| +++..+. -+++... .|.+.+...++. .+.|
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~~d 100 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKE-RDVQ 100 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH-HTCC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhh-cCCC
Confidence 4578999998765 4568889999999 5554431 2222222 234455555532 2478
Q ss_pred EEEEeCh
Q 022176 105 WIIITSP 111 (301)
Q Consensus 105 ~IiftS~ 111 (301)
.||.+..
T Consensus 101 ~Vih~A~ 107 (346)
T 4egb_A 101 VIVNFAA 107 (346)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 8887643
No 494
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=32.59 E-value=2e+02 Score=23.36 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=31.7
Q ss_pred hHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEEe
Q 022176 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (301)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (301)
..+++++. |+...+.....+.+. +++.+..... .-+++..... .+...+.|.+.|+.|..+.
T Consensus 25 i~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgii~~~~~~-~~~~~~~l~~~~iPvV~~~ 89 (275)
T 3d8u_A 25 FQQALNKA------GYQLLLGYSDYSIEQEEKLLSTFLESRP--AGVVLFGSEH-SQRTHQLLEASNTPVLEIA 89 (275)
T ss_dssp HHHHHHHT------SCEECCEECTTCHHHHHHHHHHHHTSCC--CCEEEESSCC-CHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHC------CCEEEEEcCCCCHHHHHHHHHHHHhcCC--CEEEEeCCCC-CHHHHHHHHhCCCCEEEEe
Confidence 45666777 887755544434332 3344443321 2244433332 3455667777787765543
No 495
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=32.53 E-value=62 Score=26.77 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=50.6
Q ss_pred CeEEEeCCCC-------chHHHHHHHHhCCCcEEEeceeEeeeCC-Cc----hHHHHHHhcCCCccEEEEeChHHHHHHH
Q 022176 51 PKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (301)
Q Consensus 51 ~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~-d~----~~l~~~l~~l~~~d~IiftS~~av~~f~ 118 (301)
++|++..... +..-+.+.|+++|+++... .... +. +.+.+.|..-...|.|+.++-..+-..+
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~-----~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~ 198 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS-----QPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGAL 198 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE-----EECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe-----cCCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHH
Confidence 5777654321 2234667788888765421 1121 21 2344555444568999988888777788
Q ss_pred HHHHHcCCCCceEEEEchh
Q 022176 119 EAWKEAGTPNVRIGVVGAG 137 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~ 137 (301)
+.+.+.+++++.++..+..
T Consensus 199 ~al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 199 RALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HHHHHHTCCSCEEEEEECC
T ss_pred HHHHHcCCCCcEEEEecCC
Confidence 8888888877777776654
No 496
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.51 E-value=45 Score=26.32 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=33.7
Q ss_pred chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcC--CCccEEEEeChHHH
Q 022176 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (301)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l--~~~d~IiftS~~av 114 (301)
....+++.|++.|+++.... +.+ +| +.+.+.+.+. ..+|.||.|-..++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~---iv~-Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPE---VVA-DG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCE---EEC-SS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEE---EeC-CH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 44678899999999876543 333 35 6677766543 47999998866654
No 497
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=32.47 E-value=2.1e+02 Score=23.50 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCcC-hhHHHHHHHhCCCeeEEEeeeeeeeCCCCcHHHHHHc--CCCCEEEEEC----hHHHHHHHHhhhc
Q 022176 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSWVNLISD 249 (301)
Q Consensus 177 ~~~~vLi~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~I~ftS----~sav~~~~~~l~~ 249 (301)
.+.+||++-.+.. +..+.+.|++.|++|.. .. . ..+.++.+ ..+|.|+.=- .... .+.+.+++
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~---a~-----~-~~eal~~l~~~~~dlvl~D~~mp~~~G~-~l~~~ir~ 197 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKT---AN-----D-GVDALNVLSKNHIDIVLSDVNMPNMDGY-RLTQRIRQ 197 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEE---EC-----C-SHHHHHHHHHSCCSEEEEEESSCSSCCH-HHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEE---EC-----C-HHHHHHHHHhCCCCEEEEcCCCCCCCHH-HHHHHHHh
Confidence 4568999888765 56788889888876421 11 1 12222222 4688877531 1112 22222222
Q ss_pred ccCCCceEEEECH----HHHHHHHHcCCCeeEecCCCCHHHHHHHHHHHHHcc
Q 022176 250 TEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 298 (301)
Q Consensus 250 ~~~~~~~i~aIG~----~Ta~al~~~G~~~~~v~~~ps~e~ll~ai~~~~~~~ 298 (301)
.. .+++++.+.. .....+.+.|... ++.+..+.+.|.+.|..+++.+
T Consensus 198 ~~-~~~piI~lt~~~~~~~~~~~~~~G~~~-~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 198 LG-LTLPVIGVTANALAEEKQRCLESGMDS-CLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp HH-CCSCEEEEESSTTSHHHHHHHHCCCEE-EEESSCCHHHHHHHHHHHHHHH
T ss_pred cC-CCCcEEEEECCCCHHHHHHHHHcCCce-EEECCCCHHHHHHHHHHHHHHh
Confidence 21 2566666533 3455566788754 6678789999999999887543
No 498
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=32.46 E-value=1.6e+02 Score=28.37 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHH
Q 022176 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFL 118 (301)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a-----v~~f~ 118 (301)
.+.+||+..+.+ ...-++..|+.+|++|+.+-.- +|. +.+..... -.+.|.|.+.+... +..++
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~--vP~---e~iv~aa~-~~~~diVgLS~l~t~~~~~m~~~i 170 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM--VPA---EKILRTAK-EVNADLIGLSGLITPSLDEMVNVA 170 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS--BCH---HHHHHHHH-HHTCSEEEEECCSTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHH-HcCCCEEEEEecCCCCHHHHHHHH
Confidence 355677754432 2345667889999999987654 222 34444442 25788888776332 33455
Q ss_pred HHHHHcCCCCceEEEEchhhHHH
Q 022176 119 EAWKEAGTPNVRIGVVGAGTASI 141 (301)
Q Consensus 119 ~~l~~~~~~~~~i~avG~~Ta~~ 141 (301)
+.+.+.+. ++++++-|..+.+.
T Consensus 171 ~~Lr~~g~-~i~ViVGGa~~~~~ 192 (579)
T 3bul_A 171 KEMERQGF-TIPLLIGGATTSKA 192 (579)
T ss_dssp HHHHHTTC-CSCEEEESTTCCHH
T ss_pred HHHHHcCC-CCeEEEEccccchh
Confidence 66666665 79999999876654
No 499
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.39 E-value=2.3e+02 Score=24.04 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=36.4
Q ss_pred hhHHHHHHHhhcccCCCceeecCCCCcHHH---HHHHhccCCCCCCEEEEEcCCcChhHHHHHHHhCCCeeEEE
Q 022176 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (301)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~p~~~~~e~---L~~~l~~~~~~~~~vLi~rg~~~~~~L~~~L~~~G~~v~~~ 207 (301)
...+.+++. |+.+.+.....+.+. +++.+..... .-+++.........+.+.+.+.|+.+..+
T Consensus 84 gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~~~~~~~~~~~~~~iPvV~~ 149 (338)
T 3dbi_A 84 HAARMAEEK------GRQLLLADGKHSAEEERQAIQYLLDLRC--DAIMIYPRFLSVDEIDDIIDAHSQPIMVL 149 (338)
T ss_dssp HHHHHHHHT------TCEEEEEECTTSHHHHHHHHHHHHHTTC--SEEEECCSSSCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHC------CCEEEEEeCCCChHHHHHHHHHHHhCCC--CEEEEeCCCCChHHHHHHHHcCCCCEEEE
Confidence 345677888 988876655444433 3344444321 24555444444556777888888766444
No 500
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=32.32 E-value=26 Score=30.61 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceeEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022176 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (301)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~d~~~l~~~l~~l~~~d~IiftS~~a 113 (301)
.|.+|+++.|.- ..+...++..|+++..+|+..-.. .|.+.+++.+. .+...|++++++-
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~--~~~~~v~~~~p~n 164 (365)
T 3get_A 105 SKNAFLQAGVTF--AMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK--DEIKLIFLCLPNN 164 (365)
T ss_dssp TTCEEEECSSCC--THHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT--TTEEEEEEESSCT
T ss_pred CCCEEEEeCCCh--HHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC--CCCCEEEEcCCCC
Confidence 578899988764 355667778899999998711111 23345555552 4677888876643
Done!