BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022177
         (301 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes GN=PCDHGB1 PE=3 SV=1
          Length = 927

 Score = 32.3 bits (72), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 175 SVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRKYYQPRKSHRVVTVNLQGNKVPL 234
           S+K+   NP  +F +    SP    + E+ +     R++   + SHR++   + G   PL
Sbjct: 163 SLKLYTINPNQYFSLSTKESPDGSKYPELLLEKPLDREH---QSSHRLILTAMDGGDPPL 219

Query: 235 YGAG-AGLAVSDGNRRVPLL--LVFEVRQRGNV 264
            G     + V+D N   P+    V+ V  + NV
Sbjct: 220 SGTTHIWIRVTDANDNAPVFSQEVYRVSLQENV 252


>sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2
           SV=1
          Length = 689

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 132 IIWGASRPYKAKIAVRSLTVH---NFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATF 186
           ++  A+ P K +IA  +LT      FY G+G D+ GV TK           +YNP  F
Sbjct: 613 VVATATHP-KTRIAFTTLTTEPAFQFYTGDGVDVAGVFTKRSGFCLEASRYIYNPKWF 669


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,781,031
Number of Sequences: 539616
Number of extensions: 5017051
Number of successful extensions: 13828
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 13672
Number of HSP's gapped (non-prelim): 181
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)