Query 022177
Match_columns 301
No_of_seqs 189 out of 698
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.3E-32 5E-37 247.3 25.5 177 115-301 39-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 1E-12 2.2E-17 103.0 6.0 98 177-279 1-99 (101)
3 PF07092 DUF1356: Protein of u 98.0 0.00041 8.8E-09 63.7 16.4 83 139-229 98-181 (238)
4 smart00769 WHy Water Stress an 97.9 8.5E-05 1.8E-09 59.1 8.7 60 169-229 12-72 (100)
5 COG5608 LEA14-like dessication 96.1 0.15 3.2E-06 44.1 12.0 59 171-230 49-108 (161)
6 PF12751 Vac7: Vacuolar segreg 96.0 0.031 6.7E-07 54.7 8.5 56 140-207 327-382 (387)
7 TIGR02588 conserved hypothetic 89.1 1 2.2E-05 37.5 5.5 54 117-185 7-62 (122)
8 PLN03160 uncharacterized prote 88.1 20 0.00044 32.5 16.2 106 105-222 32-147 (219)
9 PF08113 CoxIIa: Cytochrome c 65.4 3.6 7.8E-05 26.5 1.1 18 118-135 7-24 (34)
10 PF15145 DUF4577: Domain of un 64.4 6.7 0.00015 32.2 2.8 28 111-138 59-87 (128)
11 PF14155 DUF4307: Domain of un 62.9 81 0.0018 25.6 9.1 82 128-230 17-101 (112)
12 PF05545 FixQ: Cbb3-type cytoc 62.0 4 8.6E-05 28.2 0.9 24 118-141 11-34 (49)
13 KOG3950 Gamma/delta sarcoglyca 59.5 17 0.00038 33.9 4.9 22 170-191 104-127 (292)
14 PF04790 Sarcoglycan_1: Sarcog 56.2 7.1 0.00015 36.7 1.9 17 170-186 84-100 (264)
15 PRK06531 yajC preprotein trans 54.1 5.5 0.00012 32.8 0.6 18 126-143 9-26 (113)
16 COG1580 FliL Flagellar basal b 53.9 47 0.001 28.9 6.4 17 122-138 27-43 (159)
17 COG4736 CcoQ Cbb3-type cytochr 50.5 7.9 0.00017 28.3 0.9 20 122-141 15-34 (60)
18 PF04478 Mid2: Mid2 like cell 49.7 5.8 0.00013 34.3 0.2 23 122-144 60-82 (154)
19 PF07705 CARDB: CARDB; InterP 49.3 1.1E+02 0.0023 22.8 8.1 51 173-228 20-70 (101)
20 PF07787 DUF1625: Protein of u 47.6 16 0.00035 33.6 2.8 10 130-139 239-248 (248)
21 cd01324 cbb3_Oxidase_CcoQ Cyto 44.6 14 0.0003 25.7 1.4 20 122-141 16-35 (48)
22 PF12751 Vac7: Vacuolar segreg 42.7 29 0.00063 34.4 3.7 31 122-152 312-344 (387)
23 PF12505 DUF3712: Protein of u 42.5 65 0.0014 26.2 5.4 25 172-197 100-124 (125)
24 PF06072 Herpes_US9: Alphaherp 42.3 21 0.00046 26.0 2.1 11 111-121 30-40 (60)
25 PF03100 CcmE: CcmE; InterPro 42.2 47 0.001 27.6 4.5 21 115-135 8-28 (131)
26 PRK05529 cell division protein 41.7 39 0.00084 31.3 4.4 25 175-200 111-136 (255)
27 PRK10893 lipopolysaccharide ex 40.8 1.8E+02 0.0038 25.9 8.2 35 123-157 11-56 (192)
28 PHA02680 ORF090 IMV phosphoryl 39.9 24 0.00053 27.7 2.2 33 111-143 45-78 (91)
29 PF11395 DUF2873: Protein of u 39.7 13 0.00028 24.6 0.6 23 116-138 10-33 (43)
30 PF13473 Cupredoxin_1: Cupredo 39.0 19 0.00041 28.3 1.6 47 131-186 7-55 (104)
31 PF09677 TrbI_Ftype: Type-F co 38.1 23 0.00051 28.9 2.0 27 122-148 11-37 (111)
32 PRK13254 cytochrome c-type bio 36.4 1.4E+02 0.003 25.7 6.5 34 177-210 74-108 (148)
33 COG2332 CcmE Cytochrome c-type 35.6 1.7E+02 0.0037 25.3 6.9 35 176-210 74-109 (153)
34 PF15012 DUF4519: Domain of un 35.6 36 0.00079 24.5 2.4 19 122-140 38-56 (56)
35 PF06092 DUF943: Enterobacteri 35.2 23 0.0005 30.8 1.6 19 123-141 12-30 (157)
36 PF15192 TMEM213: TMEM213 fami 34.1 64 0.0014 24.7 3.6 20 125-144 58-79 (82)
37 PRK13183 psbN photosystem II r 33.0 55 0.0012 22.7 2.8 25 116-140 9-33 (46)
38 PF15281 Consortin_C: Consorti 31.5 64 0.0014 26.4 3.5 16 122-137 63-78 (113)
39 PRK12785 fliL flagellar basal 31.2 2E+02 0.0043 24.9 6.8 16 189-204 86-101 (166)
40 PF01102 Glycophorin_A: Glycop 30.7 23 0.0005 29.5 0.8 27 122-148 74-101 (122)
41 CHL00020 psbN photosystem II p 30.4 60 0.0013 22.2 2.7 25 116-140 6-30 (43)
42 PF02468 PsbN: Photosystem II 30.3 45 0.00098 22.8 2.0 24 117-140 7-30 (43)
43 KOG2621 Prohibitins and stomat 30.1 2E+02 0.0043 27.5 7.0 38 143-185 91-132 (288)
44 PF14927 Neurensin: Neurensin 29.8 56 0.0012 27.9 3.1 22 122-145 53-75 (140)
45 PHA02898 virion envelope prote 29.6 40 0.00086 26.6 1.9 31 113-143 46-78 (92)
46 PF09624 DUF2393: Protein of u 29.1 1.7E+02 0.0038 24.3 6.0 57 134-207 40-96 (149)
47 PF15125 TMEM238: TMEM238 prot 28.6 37 0.0008 25.2 1.5 10 112-121 2-11 (65)
48 PF02009 Rifin_STEVOR: Rifin/s 28.0 25 0.00054 33.7 0.7 23 116-138 258-280 (299)
49 PHA02902 putative IMV membrane 27.9 21 0.00045 26.5 0.1 22 119-140 6-27 (70)
50 COG4698 Uncharacterized protei 27.7 45 0.00098 29.8 2.2 27 125-151 22-48 (197)
51 PF14221 DUF4330: Domain of un 27.5 4.1E+02 0.0089 23.0 10.2 19 120-138 20-38 (168)
52 PF06024 DUF912: Nucleopolyhed 26.7 76 0.0016 25.3 3.2 23 116-138 65-88 (101)
53 PRK13150 cytochrome c-type bio 26.7 2.7E+02 0.0058 24.3 6.7 35 176-210 80-115 (159)
54 PRK14762 membrane protein; Pro 26.6 72 0.0016 19.3 2.2 6 116-121 4-9 (27)
55 TIGR02744 TrbI_Ftype type-F co 26.0 71 0.0015 26.3 2.9 28 122-149 12-39 (112)
56 COG1589 FtsQ Cell division sep 25.5 67 0.0015 29.8 3.1 77 122-200 38-135 (269)
57 KOG3202 SNARE protein TLG1/Syn 25.4 45 0.00097 30.9 1.8 9 113-121 213-221 (235)
58 PHA03049 IMV membrane protein; 25.4 30 0.00065 25.8 0.6 20 120-139 6-25 (68)
59 PF09911 DUF2140: Uncharacteri 25.2 87 0.0019 27.8 3.6 21 122-142 11-31 (187)
60 PF09753 Use1: Membrane fusion 24.9 43 0.00094 30.8 1.7 7 115-121 228-234 (251)
61 COG5353 Uncharacterized protei 24.7 37 0.00079 29.4 1.0 20 122-141 16-35 (161)
62 PF12321 DUF3634: Protein of u 24.3 33 0.00072 28.0 0.7 18 130-147 10-29 (108)
63 PRK05886 yajC preprotein trans 24.2 26 0.00057 28.6 0.1 14 130-143 15-28 (109)
64 PRK14094 psbM photosystem II r 23.3 96 0.0021 21.6 2.7 20 116-135 8-27 (50)
65 PRK07718 fliL flagellar basal 22.9 1.1E+02 0.0025 25.6 3.7 13 191-203 64-76 (142)
66 KOG3927 Na+/K+ ATPase, beta su 22.5 56 0.0012 31.3 2.0 39 107-145 39-81 (300)
67 PF05568 ASFV_J13L: African sw 22.4 42 0.00092 29.0 1.0 33 122-154 39-73 (189)
68 PF15099 PIRT: Phosphoinositid 22.3 32 0.0007 28.8 0.3 34 113-146 49-82 (129)
69 PRK13165 cytochrome c-type bio 21.8 5.1E+02 0.011 22.6 7.6 27 184-210 88-115 (160)
70 PF06143 Baculo_11_kDa: Baculo 21.4 75 0.0016 24.8 2.1 14 118-131 42-55 (84)
71 PF07172 GRP: Glycine rich pro 21.1 70 0.0015 25.4 2.0 6 126-131 13-18 (95)
72 PF07184 CTV_P33: Citrus trist 20.9 57 0.0012 29.7 1.5 23 111-133 278-302 (303)
73 PRK13159 cytochrome c-type bio 20.6 3.5E+02 0.0075 23.5 6.2 27 184-210 82-109 (155)
74 PF01456 Mucin: Mucin-like gly 20.0 65 0.0014 26.7 1.7 12 113-124 4-15 (143)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=247.33 Aligned_cols=177 Identities=10% Similarity=0.154 Sum_probs=143.6
Q ss_pred hhHHHHH-HHHHHHHHhheeeeeecCCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcC
Q 022177 115 ILIALLG-FVLVFSIFCLIIWGASRPYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSS 193 (301)
Q Consensus 115 ~~~~~~~-~vlllgi~~LIlwlv~RP~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~ 193 (301)
|++|+++ +++|+++++.++|++|||++|+|+|++++|++|+++.+. .+...+++++.++++++|||. ++|+|++
T Consensus 39 c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~ 113 (219)
T PLN03160 39 CCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSN 113 (219)
T ss_pred EHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcC
Confidence 4344434 555566666777999999999999999999999997531 123456777888899999997 8999999
Q ss_pred ceEEEEECCeEeeeeecCcccccCCCEEEEEEEEEeeeeecCCCcccceeccCCceEEEEEEEEEEEEEEEEeeEEEeeE
Q 022177 194 SPVNLMFSEIAVATGQLRKYYQPRKSHRVVTVNLQGNKVPLYGAGAGLAVSDGNRRVPLLLVFEVRQRGNVVGKLVKTRH 273 (301)
Q Consensus 194 ~~v~l~Y~g~~la~g~lp~F~Q~~ks~~~v~v~v~g~~vpL~g~g~~L~~d~~~g~VpL~l~~~~r~R~~VlG~l~~~k~ 273 (301)
+.+.++|+|..||.+.+|+|+|+++++..+.+++.....-+.. +..|..|..+|.++|++++++++|++ +|+++++++
T Consensus 114 ~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~~G~v~l~~~~~v~gkVk-v~~i~k~~v 191 (219)
T PLN03160 114 TTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDISSGLLNMNSYTRIGGKVK-ILKIIKKHV 191 (219)
T ss_pred eEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhHHHHhhCCeEEEEEEEEEEEEEE-EEEEEEEEE
Confidence 9999999999999999999999999998888776543221221 34688889999999999999999999 568899999
Q ss_pred EEEEEEEEEEeCCCCCceeeecCCceeC
Q 022177 274 QRRISCSLLVDSRNNKPVKLKEKSCKYD 301 (301)
Q Consensus 274 ~~~V~C~l~v~~~~~k~~~~~~~~C~~~ 301 (301)
..+++|++.|+.. ...++++.|+++
T Consensus 192 ~~~v~C~v~V~~~---~~~i~~~~C~~~ 216 (219)
T PLN03160 192 VVKMNCTMTVNIT---SQAIQGQKCKRH 216 (219)
T ss_pred EEEEEeEEEEECC---CCEEeccEeccc
Confidence 9999999999842 246778899864
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.36 E-value=1e-12 Score=103.01 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=73.5
Q ss_pred EEEEecCCceeEEEEcCceEEEEECCeEee-eeecCcccccCCCEEEEEEEEEeeeeecCCCcccceeccCCceEEEEEE
Q 022177 177 KMNVYNPATFFGIHVSSSPVNLMFSEIAVA-TGQLRKYYQPRKSHRVVTVNLQGNKVPLYGAGAGLAVSDGNRRVPLLLV 255 (301)
Q Consensus 177 ~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la-~g~lp~F~Q~~ks~~~v~v~v~g~~vpL~g~g~~L~~d~~~g~VpL~l~ 255 (301)
+|+++|||. ++++|++..+.++|.|..|| .+..++|+|++++++.+.+.+..+...+ ...+.+.. .+.+++++.
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~-~~~~~~~v~ 75 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL-AGRVPFDVT 75 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH-HTTSCEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh-ccccceEEE
Confidence 589999998 99999999999999999999 7789999999999999998887765433 22354555 567888888
Q ss_pred EEEEEEEEEEeeEEEeeEEEEEEE
Q 022177 256 FEVRQRGNVVGKLVKTRHQRRISC 279 (301)
Q Consensus 256 ~~~r~R~~VlG~l~~~k~~~~V~C 279 (301)
++++++++|++.++..+....++|
T Consensus 76 ~~~~g~~~v~~~~~~~~~~v~~~~ 99 (101)
T PF03168_consen 76 YRIRGTFKVLGTPIFGSVRVPVSC 99 (101)
T ss_dssp EEEEEEEE-EE-TTTSCEEEEEEE
T ss_pred EEEEEEEEEcccceeeeEEEeEEe
Confidence 888888886544444444444444
No 3
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.00 E-value=0.00041 Score=63.68 Aligned_cols=83 Identities=14% Similarity=0.330 Sum_probs=60.0
Q ss_pred CCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCcc-cccC
Q 022177 139 PYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRKY-YQPR 217 (301)
Q Consensus 139 P~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F-~Q~~ 217 (301)
|+.-.+.-.++......++.. ...+.+|++-.|.+.||| ++.|.+....+++.|....+|.+..... ..++
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~-------~~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~P 169 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPD-------KSTVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGP 169 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCC-------CCEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecc
Confidence 776555544444444444432 125789999999999999 9999999999999999999999987643 4456
Q ss_pred CCEEEEEEEEEe
Q 022177 218 KSHRVVTVNLQG 229 (301)
Q Consensus 218 ks~~~v~v~v~g 229 (301)
++.+.+...+..
T Consensus 170 rs~~q~~~tV~t 181 (238)
T PF07092_consen 170 RSSKQVNYTVKT 181 (238)
T ss_pred cCCceEEEEeeE
Confidence 666666655554
No 4
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.89 E-value=8.5e-05 Score=59.07 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=54.1
Q ss_pred eeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecC-cccccCCCEEEEEEEEEe
Q 022177 169 MLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLR-KYYQPRKSHRVVTVNLQG 229 (301)
Q Consensus 169 ~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp-~F~Q~~ks~~~v~v~v~g 229 (301)
.+...+.+++.+.|||. +.+.|+.....++|.|..||+|..+ .+..++++++.+.+.+..
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~ 72 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTV 72 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEe
Confidence 46788889999999995 8999999999999999999999985 799999999998888875
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.10 E-value=0.15 Score=44.05 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=51.3
Q ss_pred EEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeee-cCcccccCCCEEEEEEEEEee
Q 022177 171 TMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQ-LRKYYQPRKSHRVVTVNLQGN 230 (301)
Q Consensus 171 s~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~-lp~F~Q~~ks~~~v~v~v~g~ 230 (301)
...+-.++.++|||. |.|-++.....++-+|..+|.|. +.++..++++..++.+.+.-+
T Consensus 49 ~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d 108 (161)
T COG5608 49 ETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLD 108 (161)
T ss_pred ceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEe
Confidence 356677899999995 89999999999999999999996 566999999999998887654
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=96.01 E-value=0.031 Score=54.66 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeee
Q 022177 140 YKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVAT 207 (301)
Q Consensus 140 ~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~ 207 (301)
.+|--.|+=+.|+|.-.+.. -+-+.|++.+.||| .|.|..+...+.||=+-.-+++
T Consensus 327 tKpL~~v~v~~I~NVlaS~q-----------ELmfdl~V~A~NPn-~~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 327 TKPLTDVQVVSIQNVLASEQ-----------ELMFDLTVEAFNPN-WFTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred CcccccceEEEeeeeeeccc-----------eEEEeeEEEEECCC-eEEEEeccceeeeEecCCccCc
Confidence 34444444445555544331 24455678999999 6999999999999866544443
No 7
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=89.10 E-value=1 Score=37.47 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhheee--eeecCCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCc
Q 022177 117 IALLGFVLVFSIFCLIIW--GASRPYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPAT 185 (301)
Q Consensus 117 ~~~~~~vlllgi~~LIlw--lv~RP~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~ 185 (301)
...+.+++|++++.+|+| +.-+++.|.+.+......+ +....+-+-++++|-..
T Consensus 7 t~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r---------------~~~gqyyVpF~V~N~gg 62 (122)
T TIGR02588 7 TFGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER---------------MQTGQYYVPFAIHNLGG 62 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeE---------------EeCCEEEEEEEEEeCCC
Confidence 344457778888888874 6667889999887655443 22344566778888774
No 8
>PLN03160 uncharacterized protein; Provisional
Probab=88.10 E-value=20 Score=32.53 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=57.9
Q ss_pred cCCCcccchhhhH-HHHHHHHHHHHHhheeeeeecC--CCcEEEEEEEEEee-------EEecCCCCCCCCccceeEEEE
Q 022177 105 ADKGYTRRCQILI-ALLGFVLVFSIFCLIIWGASRP--YKAKIAVRSLTVHN-------FYFGEGADLTGVPTKMLTMNC 174 (301)
Q Consensus 105 ~~~~~~R~c~~~~-~~~~~vlllgi~~LIlwlv~RP--~~P~~~V~s~~v~~-------f~v~~g~d~tGvpt~~ls~n~ 174 (301)
.++++.+||.|+| .++++++++++++++++-.=.| +--.++|+++.+.+ +|++-..+- ..=|-|.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v-----~v~NPN~ 106 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADV-----SVKNPNV 106 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEE-----EEECCCc
Confidence 3455777877554 4666555555555555545777 44667777777643 221100000 0012233
Q ss_pred EEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCcccccCCCEEE
Q 022177 175 SVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRKYYQPRKSHRV 222 (301)
Q Consensus 175 tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F~Q~~ks~~~ 222 (301)
+.+.+. |..+.++|.+..+ +...+..|..+++.+.+.+.+.
T Consensus 107 -~~~~Y~--~~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 107 -ASFKYS--NTTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred -eeEEEc--CeEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEE
Confidence 345554 3347888987644 3455666777777766666553
No 9
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=65.40 E-value=3.6 Score=26.51 Aligned_cols=18 Identities=33% Similarity=0.833 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhheeee
Q 022177 118 ALLGFVLVFSIFCLIIWG 135 (301)
Q Consensus 118 ~~~~~vlllgi~~LIlwl 135 (301)
+.++.+.++++++||+|+
T Consensus 7 Gal~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 7 GALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHHHHH
Confidence 344566677888888884
No 10
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=64.38 E-value=6.7 Score=32.23 Aligned_cols=28 Identities=11% Similarity=0.371 Sum_probs=19.2
Q ss_pred cchhhhHHHHH-HHHHHHHHhheeeeeec
Q 022177 111 RRCQILIALLG-FVLVFSIFCLIIWGASR 138 (301)
Q Consensus 111 R~c~~~~~~~~-~vlllgi~~LIlwlv~R 138 (301)
++|.+|+++++ +++-++++.++++|+++
T Consensus 59 ~~~lffvglii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHheee
Confidence 44557777666 77777777777777654
No 11
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=62.91 E-value=81 Score=25.57 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHhheeeeeec-CCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEee
Q 022177 128 IFCLIIWGASR-PYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVA 206 (301)
Q Consensus 128 i~~LIlwlv~R-P~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la 206 (301)
+++++.|+.+. ...|.++-+.+. |.+.+.+ ++..++.++-. |..-.-=-+ -.+.|.+..+|
T Consensus 17 ~~~~~~w~~~~~~~~~~v~~~~~g---f~vv~d~----------~v~v~f~Vtr~-~~~~a~C~V----rA~~~d~aeVG 78 (112)
T PF14155_consen 17 AGAVVAWFGYSQFGSPPVSAEVIG---FEVVDDS----------TVEVTFDVTRD-PGRPAVCIV----RALDYDGAEVG 78 (112)
T ss_pred HHHHHhHhhhhhccCCCceEEEEE---EEECCCC----------EEEEEEEEEEC-CCCCEEEEE----EEEeCCCCEEE
Confidence 34444555444 455666544444 4443321 34445445533 665332222 23457777777
Q ss_pred eee--cCcccccCCCEEEEEEEEEee
Q 022177 207 TGQ--LRKYYQPRKSHRVVTVNLQGN 230 (301)
Q Consensus 207 ~g~--lp~F~Q~~ks~~~v~v~v~g~ 230 (301)
.-. +|+ +...+..+.+.+.-.
T Consensus 79 rreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 79 RREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred EEEEEECC---CCCcEEEEEEEEEec
Confidence 653 444 233444445555443
No 12
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=61.95 E-value=4 Score=28.17 Aligned_cols=24 Identities=38% Similarity=0.467 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhheeeeeecCCC
Q 022177 118 ALLGFVLVFSIFCLIIWGASRPYK 141 (301)
Q Consensus 118 ~~~~~vlllgi~~LIlwlv~RP~~ 141 (301)
-.+.+++++++++.|+|.+++|+.
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 344466677777777777888874
No 13
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=59.53 E-value=17 Score=33.87 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=15.3
Q ss_pred eEEEE--EEEEEEecCCceeEEEE
Q 022177 170 LTMNC--SVKMNVYNPATFFGIHV 191 (301)
Q Consensus 170 ls~n~--tv~l~vrNPN~~~gI~Y 191 (301)
|++.. .+++++||||.++.-++
T Consensus 104 l~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 104 LYLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred eEEEeccCeeEEccCCCCceeeeE
Confidence 44443 68899999998765443
No 14
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=56.18 E-value=7.1 Score=36.67 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=11.5
Q ss_pred eEEEEEEEEEEecCCce
Q 022177 170 LTMNCSVKMNVYNPATF 186 (301)
Q Consensus 170 ls~n~tv~l~vrNPN~~ 186 (301)
++.+-.+.++++|.|..
T Consensus 84 i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 84 IQSSRNVTLNARNENGS 100 (264)
T ss_pred EEecCceEEEEecCCCc
Confidence 34444577888888875
No 15
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=54.09 E-value=5.5 Score=32.77 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=10.7
Q ss_pred HHHHhheeeeeecCCCcE
Q 022177 126 FSIFCLIIWGASRPYKAK 143 (301)
Q Consensus 126 lgi~~LIlwlv~RP~~P~ 143 (301)
+.+++.++|+.+||++=+
T Consensus 9 ~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 9 FVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHheechHHHH
Confidence 333444456679997654
No 16
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=53.93 E-value=47 Score=28.89 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=10.9
Q ss_pred HHHHHHHHhheeeeeec
Q 022177 122 FVLVFSIFCLIIWGASR 138 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~R 138 (301)
+++++++.+.++|+..+
T Consensus 27 vl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 27 VLLALAGAGYFFWFGSK 43 (159)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 55566666666777753
No 17
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.52 E-value=7.9 Score=28.32 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHhheeeeeecCCC
Q 022177 122 FVLVFSIFCLIIWGASRPYK 141 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~ 141 (301)
+++++.+++.++|.++||++
T Consensus 15 t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 55555666777888999965
No 18
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=49.71 E-value=5.8 Score=34.30 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHHHHhheeeeeecCCCcEE
Q 022177 122 FVLVFSIFCLIIWGASRPYKAKI 144 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P~~ 144 (301)
..+|+++++||+|+..|+++=.|
T Consensus 60 g~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 60 GPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHHhheeEEEecccCcc
Confidence 45667788888888889887543
No 19
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=49.32 E-value=1.1e+02 Score=22.81 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=30.3
Q ss_pred EEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCcccccCCCEEEEEEEEE
Q 022177 173 NCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRKYYQPRKSHRVVTVNLQ 228 (301)
Q Consensus 173 n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F~Q~~ks~~~v~v~v~ 228 (301)
..+++++++|..... -....+.++..|..++...++.+ ++.....+.+.+.
T Consensus 20 ~~~i~~~V~N~G~~~---~~~~~v~~~~~~~~~~~~~i~~L--~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 20 PVTITVTVKNNGTAD---AENVTVRLYLDGNSVSTVTIPSL--APGESETVTFTWT 70 (101)
T ss_dssp EEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCC---CCCEEEEEEECCceeccEEECCc--CCCcEEEEEEEEE
Confidence 456778899987532 23456677777887777667555 3444555554444
No 20
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=47.61 E-value=16 Score=33.57 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.0
Q ss_pred hheeeeeecC
Q 022177 130 CLIIWGASRP 139 (301)
Q Consensus 130 ~LIlwlv~RP 139 (301)
+.+.|+.+||
T Consensus 239 Ia~aW~~yRP 248 (248)
T PF07787_consen 239 IALAWLFYRP 248 (248)
T ss_pred HHHhheeeCc
Confidence 3345777776
No 21
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=44.57 E-value=14 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.3
Q ss_pred HHHHHHHHhheeeeeecCCC
Q 022177 122 FVLVFSIFCLIIWGASRPYK 141 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~ 141 (301)
+++++++++.|++.+++|+.
T Consensus 16 l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 55566777777777888854
No 22
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=42.69 E-value=29 Score=34.38 Aligned_cols=31 Identities=10% Similarity=0.396 Sum_probs=18.5
Q ss_pred HHHHHHHHhheeeeeecC-CCcEE-EEEEEEEe
Q 022177 122 FVLVFSIFCLIIWGASRP-YKAKI-AVRSLTVH 152 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP-~~P~~-~V~s~~v~ 152 (301)
+||++|.++..++..-|| ..-.+ .|+++-.+
T Consensus 312 ~lL~ig~~~gFv~AttKpL~~v~v~~I~NVlaS 344 (387)
T PF12751_consen 312 LLLVIGFAIGFVFATTKPLTDVQVVSIQNVLAS 344 (387)
T ss_pred HHHHHHHHHHhhhhcCcccccceEEEeeeeeec
Confidence 344444444445667788 66666 57766654
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=42.47 E-value=65 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=18.0
Q ss_pred EEEEEEEEEecCCceeEEEEcCceEE
Q 022177 172 MNCSVKMNVYNPATFFGIHVSSSPVN 197 (301)
Q Consensus 172 ~n~tv~l~vrNPN~~~gI~Y~~~~v~ 197 (301)
.|+..++.+.||.. +++......+.
T Consensus 100 ~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 56677788899995 77776665554
No 24
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=42.34 E-value=21 Score=26.05 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=5.3
Q ss_pred cchhhhHHHHH
Q 022177 111 RRCQILIALLG 121 (301)
Q Consensus 111 R~c~~~~~~~~ 121 (301)
|+|++.+++++
T Consensus 30 Rrc~~~v~~v~ 40 (60)
T PF06072_consen 30 RRCRLAVAIVF 40 (60)
T ss_pred HHHHHHHHHHH
Confidence 55654444444
No 25
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=42.21 E-value=47 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.730 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhheeee
Q 022177 115 ILIALLGFVLVFSIFCLIIWG 135 (301)
Q Consensus 115 ~~~~~~~~vlllgi~~LIlwl 135 (301)
+.+.+++++++++++.|+++.
T Consensus 8 l~~~~~~~~~i~~~~~l~~~~ 28 (131)
T PF03100_consen 8 LILVVLGLVIIAAAIYLILYS 28 (131)
T ss_dssp ---------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555543
No 26
>PRK05529 cell division protein FtsQ; Provisional
Probab=41.73 E-value=39 Score=31.33 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=17.8
Q ss_pred EEEEEEecCCceeEEEEc-CceEEEEE
Q 022177 175 SVKMNVYNPATFFGIHVS-SSPVNLMF 200 (301)
Q Consensus 175 tv~l~vrNPN~~~gI~Y~-~~~v~l~Y 200 (301)
+++++-+.||+ +.|+.. ..++....
T Consensus 111 sa~V~r~~P~t-l~I~V~Er~pvA~~~ 136 (255)
T PRK05529 111 SYSVESKPPGT-IVVRVVERVPLAFIQ 136 (255)
T ss_pred EEEEEEeCCCE-EEEEEEEeeeEEEEE
Confidence 67889999995 778876 44444443
No 27
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=40.76 E-value=1.8e+02 Score=25.89 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHhheeee-----------eecCCCcEEEEEEEEEeeEEec
Q 022177 123 VLVFSIFCLIIWG-----------ASRPYKAKIAVRSLTVHNFYFG 157 (301)
Q Consensus 123 vlllgi~~LIlwl-----------v~RP~~P~~~V~s~~v~~f~v~ 157 (301)
+|.+++++|+.|. ...++.|.|.+++++...|+.+
T Consensus 11 il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 11 LLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred HHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC
Confidence 3444455555553 3356789999999999988753
No 28
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=39.92 E-value=24 Score=27.70 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=25.1
Q ss_pred cchhhhHHHHH-HHHHHHHHhheeeeeecCCCcE
Q 022177 111 RRCQILIALLG-FVLVFSIFCLIIWGASRPYKAK 143 (301)
Q Consensus 111 R~c~~~~~~~~-~vlllgi~~LIlwlv~RP~~P~ 143 (301)
+|-.+++||++ .++++|+++.-.|.-.+|.+|.
T Consensus 45 wRalSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 45 WRALSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 33335666666 8889999999999988887776
No 29
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.67 E-value=13 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.636 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHh-heeeeeec
Q 022177 116 LIALLGFVLVFSIFC-LIIWGASR 138 (301)
Q Consensus 116 ~~~~~~~vlllgi~~-LIlwlv~R 138 (301)
.+|++.+++.+.++. +|+|.++.
T Consensus 10 ylc~l~~llflv~imliif~f~le 33 (43)
T PF11395_consen 10 YLCFLSFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444333333333 34565543
No 30
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=39.00 E-value=19 Score=28.25 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=13.4
Q ss_pred heeeeeecCCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEE--EEEEEEEecCCce
Q 022177 131 LIIWGASRPYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMN--CSVKMNVYNPATF 186 (301)
Q Consensus 131 LIlwlv~RP~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n--~tv~l~vrNPN~~ 186 (301)
+.+|+........-....+++.++.+++. .+++. -.++|.++|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~v~I~~~~~~f~P~---------~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 7 AALALSSSASAAAAQTVTITVTDFGFSPS---------TITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp -----------------------EEEES----------EEEEETTCEEEEEEEE-SSS
T ss_pred ccccccccccccccccccccccCCeEecC---------EEEEcCCCeEEEEEEECCCC
Confidence 33344444444444455666666666653 23333 3577888888764
No 31
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=38.13 E-value=23 Score=28.88 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHhheeeeeecCCCcEEEEEE
Q 022177 122 FVLVFSIFCLIIWGASRPYKAKIAVRS 148 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P~~~V~s 148 (301)
++.++.+-+.+.|++.++..|.+.+-+
T Consensus 11 ~~~~~~~~~~vt~~l~~~~~p~iV~~d 37 (111)
T PF09677_consen 11 AVAALLLSAWVTWLLASQPQPRIVTFD 37 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEee
Confidence 334444445566666676777554433
No 32
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.39 E-value=1.4e+02 Score=25.66 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=14.4
Q ss_pred EEEEecCCceeEEEEcCc-eEEEEECCeEeeeeec
Q 022177 177 KMNVYNPATFFGIHVSSS-PVNLMFSEIAVATGQL 210 (301)
Q Consensus 177 ~l~vrNPN~~~gI~Y~~~-~v~l~Y~g~~la~g~l 210 (301)
++.+.-.+..+.|.|+.. +-.+.-+...++.|.+
T Consensus 74 ~F~ltD~~~~i~V~Y~G~lPd~F~eg~~VVv~G~~ 108 (148)
T PRK13254 74 RFVVTDGNATVPVVYTGILPDLFREGQGVVAEGRL 108 (148)
T ss_pred EEEEEeCCeEEEEEECCCCCccccCCCEEEEEEEE
Confidence 333333455555665532 2222222333455554
No 33
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=1.7e+02 Score=25.32 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=20.4
Q ss_pred EEEEEecCCceeEEEEcCceEEEEECC-eEeeeeec
Q 022177 176 VKMNVYNPATFFGIHVSSSPVNLMFSE-IAVATGQL 210 (301)
Q Consensus 176 v~l~vrNPN~~~gI~Y~~~~v~l~Y~g-~~la~g~l 210 (301)
+.+.+.--|..+.|.|..+-=++|=.| ..++.|++
T Consensus 74 v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 74 VSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EEEEEecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 334444566667777776555554443 34577776
No 34
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=35.56 E-value=36 Score=24.54 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=13.4
Q ss_pred HHHHHHHHhheeeeeecCC
Q 022177 122 FVLVFSIFCLIIWGASRPY 140 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~ 140 (301)
+++++.++++++|+.-||+
T Consensus 38 l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 38 LAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHhheeEEeccCC
Confidence 4445555777889999985
No 35
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=35.24 E-value=23 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=12.4
Q ss_pred HHHHHHHhheeeeeecCCC
Q 022177 123 VLVFSIFCLIIWGASRPYK 141 (301)
Q Consensus 123 vlllgi~~LIlwlv~RP~~ 141 (301)
++|+++++.++|+.+||-.
T Consensus 12 l~l~~~~~y~~W~~~rpV~ 30 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRPVE 30 (157)
T ss_pred HHHHHHHHHhhhhccCCeE
Confidence 3344444478899999944
No 36
>PF15192 TMEM213: TMEM213 family
Probab=34.14 E-value=64 Score=24.65 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHhhee--eeeecCCCcEE
Q 022177 125 VFSIFCLII--WGASRPYKAKI 144 (301)
Q Consensus 125 llgi~~LIl--wlv~RP~~P~~ 144 (301)
++.+|.|.+ ..-++|..|+.
T Consensus 58 FLTLILLCvdKlmKLtPdepK~ 79 (82)
T PF15192_consen 58 FLTLILLCVDKLMKLTPDEPKD 79 (82)
T ss_pred HHHHHHHHHHHHhccCCCCccc
Confidence 334444443 46778888875
No 37
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=33.05 E-value=55 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHhheeeeeecCC
Q 022177 116 LIALLGFVLVFSIFCLIIWGASRPY 140 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwlv~RP~ 140 (301)
++.+.+..+|+++...-+|.+|-|.
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCCc
Confidence 3444446778899999999999874
No 38
>PF15281 Consortin_C: Consortin C-terminus
Probab=31.48 E-value=64 Score=26.45 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=8.2
Q ss_pred HHHHHHHHhheeeeee
Q 022177 122 FVLVFSIFCLIIWGAS 137 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~ 137 (301)
+.+++.+..-.+|..+
T Consensus 63 vTv~lS~gGTALYCt~ 78 (113)
T PF15281_consen 63 VTVVLSVGGTALYCTF 78 (113)
T ss_pred HHHHHhccceEEEEec
Confidence 3444455555566554
No 39
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=31.19 E-value=2e+02 Score=24.89 Aligned_cols=16 Identities=13% Similarity=0.034 Sum_probs=9.7
Q ss_pred EEEcCceEEEEECCeE
Q 022177 189 IHVSSSPVNLMFSEIA 204 (301)
Q Consensus 189 I~Y~~~~v~l~Y~g~~ 204 (301)
.+|=...+.+.+.+..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4666666677666543
No 40
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.66 E-value=23 Score=29.51 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=11.9
Q ss_pred HHHHHHHHhheeeeeecC-CCcEEEEEE
Q 022177 122 FVLVFSIFCLIIWGASRP-YKAKIAVRS 148 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP-~~P~~~V~s 148 (301)
++-++|+++||+|++-|= |++...++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 444566777777777754 566666554
No 41
>CHL00020 psbN photosystem II protein N
Probab=30.37 E-value=60 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHhheeeeeecCC
Q 022177 116 LIALLGFVLVFSIFCLIIWGASRPY 140 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwlv~RP~ 140 (301)
++.+++..+++++...-+|.+|-|.
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCCc
Confidence 3444446778888999999999873
No 42
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=30.25 E-value=45 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhheeeeeecCC
Q 022177 117 IALLGFVLVFSIFCLIIWGASRPY 140 (301)
Q Consensus 117 ~~~~~~vlllgi~~LIlwlv~RP~ 140 (301)
+.+.+..+++++...-+|.+|.|-
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeCCC
Confidence 444446778888888899999763
No 43
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=30.11 E-value=2e+02 Score=27.47 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=26.4
Q ss_pred EEEEEEEEEeeEEecC----CCCCCCCccceeEEEEEEEEEEecCCc
Q 022177 143 KIAVRSLTVHNFYFGE----GADLTGVPTKMLTMNCSVKMNVYNPAT 185 (301)
Q Consensus 143 ~~~V~s~~v~~f~v~~----g~d~tGvpt~~ls~n~tv~l~vrNPN~ 185 (301)
.|...++++..||+.. ..|+ .++++++.+.+.++||--
T Consensus 91 t~~kVDLRt~sfnVPpqeIltkDs-----vtvsVdAvVyyri~dpi~ 132 (288)
T KOG2621|consen 91 TFRKVDLRTQSFNVPPQEILTKDS-----VTISVDAVVYYRISDPII 132 (288)
T ss_pred eeeeeeeeEEeecCCHHHHhcccc-----eEEEeceEEEEEecCHHH
Confidence 4567788888888853 2332 257778888888888863
No 44
>PF14927 Neurensin: Neurensin
Probab=29.81 E-value=56 Score=27.87 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=13.6
Q ss_pred HHHHHHHHhhee-eeeecCCCcEEE
Q 022177 122 FVLVFSIFCLII-WGASRPYKAKIA 145 (301)
Q Consensus 122 ~vlllgi~~LIl-wlv~RP~~P~~~ 145 (301)
+++++|++++++ |+ =|++++..
T Consensus 53 l~Ll~Gi~~l~vgY~--vP~~~e~~ 75 (140)
T PF14927_consen 53 LLLLLGIVALTVGYL--VPPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHhhcc--cCCcceec
Confidence 667777777766 55 35555444
No 45
>PHA02898 virion envelope protein; Provisional
Probab=29.57 E-value=40 Score=26.59 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=23.6
Q ss_pred hhhhHHHHH-HHHHHHHHhheeee-eecCCCcE
Q 022177 113 CQILIALLG-FVLVFSIFCLIIWG-ASRPYKAK 143 (301)
Q Consensus 113 c~~~~~~~~-~vlllgi~~LIlwl-v~RP~~P~ 143 (301)
-.+++||++ .++++|++++-.|. -.+|.+|.
T Consensus 46 alSii~FIlgivl~lG~~ifs~y~r~C~~~~~~ 78 (92)
T PHA02898 46 SISIISFILAIILILGIIFFKGYNMFCGGNTTD 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 335666666 88899999999997 67777665
No 46
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=29.05 E-value=1.7e+02 Score=24.32 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=33.4
Q ss_pred eeeecCCCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeee
Q 022177 134 WGASRPYKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVAT 207 (301)
Q Consensus 134 wlv~RP~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~ 207 (301)
|+--.=+++.+++....- +..+ -.+.+..+++|-++ ..+..=...+.+...+...+.
T Consensus 40 ~l~~~~~~~~~~~~~~~~--l~~~--------------~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 40 WLDKYLKKIELTLTSQKR--LQYS--------------ESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred HHhhhcCCceEEEeeeee--eeec--------------cEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCc
Confidence 444444677777665443 2211 23456678888885 566666777777775544444
No 47
>PF15125 TMEM238: TMEM238 protein family
Probab=28.61 E-value=37 Score=25.20 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=5.2
Q ss_pred chhhhHHHHH
Q 022177 112 RCQILIALLG 121 (301)
Q Consensus 112 ~c~~~~~~~~ 121 (301)
||++++++.+
T Consensus 2 rC~~~f~laV 11 (65)
T PF15125_consen 2 RCRHFFWLAV 11 (65)
T ss_pred ceeehhHHHH
Confidence 4665555443
No 48
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=28.04 E-value=25 Score=33.70 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHhheeeeeec
Q 022177 116 LIALLGFVLVFSIFCLIIWGASR 138 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwlv~R 138 (301)
+++-++.+|++.++.+|+||++|
T Consensus 258 I~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444466677778888888886
No 49
>PHA02902 putative IMV membrane protein; Provisional
Probab=27.89 E-value=21 Score=26.51 Aligned_cols=22 Identities=32% Similarity=0.797 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhheeeeeecCC
Q 022177 119 LLGFVLVFSIFCLIIWGASRPY 140 (301)
Q Consensus 119 ~~~~vlllgi~~LIlwlv~RP~ 140 (301)
|+.+++.+.++|+++|.++|-.
T Consensus 6 fvi~~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777888888777654
No 50
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.69 E-value=45 Score=29.75 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=18.1
Q ss_pred HHHHHhheeeeeecCCCcEEEEEEEEE
Q 022177 125 VFSIFCLIIWGASRPYKAKIAVRSLTV 151 (301)
Q Consensus 125 llgi~~LIlwlv~RP~~P~~~V~s~~v 151 (301)
.+.++++|+..++.|+.|...+.+++=
T Consensus 22 n~l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 22 NTLLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHhheeeccCCCCCchhhccCc
Confidence 333346677778889997777666553
No 51
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=27.54 E-value=4.1e+02 Score=23.04 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhheeeeeec
Q 022177 120 LGFVLVFSIFCLIIWGASR 138 (301)
Q Consensus 120 ~~~vlllgi~~LIlwlv~R 138 (301)
+++++++++++.++|....
T Consensus 20 ~~~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 20 LAILVVLAVVVGIFWKPGL 38 (168)
T ss_pred HHHHHHHHHhheeEEEecc
Confidence 3455556667777776555
No 52
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.72 E-value=76 Score=25.26 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHhheeee-eec
Q 022177 116 LIALLGFVLVFSIFCLIIWG-ASR 138 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwl-v~R 138 (301)
+++++.+++++.++.+|.|. ++|
T Consensus 65 li~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEEEe
Confidence 33444455555555556554 444
No 53
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=26.70 E-value=2.7e+02 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=16.9
Q ss_pred EEEEEecCCceeEEEEcCceEEEEECC-eEeeeeec
Q 022177 176 VKMNVYNPATFFGIHVSSSPVNLMFSE-IAVATGQL 210 (301)
Q Consensus 176 v~l~vrNPN~~~gI~Y~~~~v~l~Y~g-~~la~g~l 210 (301)
+.+.+...+..+.|.|+..-=.+|=.| ..|+.|.+
T Consensus 80 v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 80 VNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred EEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE
Confidence 444555555555666655444443333 23455554
No 54
>PRK14762 membrane protein; Provisional
Probab=26.55 E-value=72 Score=19.32 Aligned_cols=6 Identities=0% Similarity=-0.097 Sum_probs=2.5
Q ss_pred hHHHHH
Q 022177 116 LIALLG 121 (301)
Q Consensus 116 ~~~~~~ 121 (301)
++|++.
T Consensus 4 ~lw~i~ 9 (27)
T PRK14762 4 ILWAVL 9 (27)
T ss_pred HHHHHH
Confidence 344444
No 55
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=25.96 E-value=71 Score=26.26 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHHHHHHhheeeeeecCCCcEEEEEEE
Q 022177 122 FVLVFSIFCLIIWGASRPYKAKIAVRSL 149 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P~~~V~s~ 149 (301)
++.++.+.++++|++.|-..|.+.+-|+
T Consensus 12 ~~~~~~l~~~~s~~v~~~~~P~iV~fdm 39 (112)
T TIGR02744 12 CLAMVVLSALVSYGIVRLNSPVTVAFDM 39 (112)
T ss_pred HHHHHHHHHHHHHHhhhcCCCeEEEEec
Confidence 5566677788899999877887765544
No 56
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=25.53 E-value=67 Score=29.84 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=47.1
Q ss_pred HHHHHHHHhheeeeeecCCCcEEEEEEEEEee-EEecCC-----CCCCCCccceeEEEE--------------EEEEEEe
Q 022177 122 FVLVFSIFCLIIWGASRPYKAKIAVRSLTVHN-FYFGEG-----ADLTGVPTKMLTMNC--------------SVKMNVY 181 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P~~~V~s~~v~~-f~v~~g-----~d~tGvpt~~ls~n~--------------tv~l~vr 181 (301)
+++++++.++++|...-+..|.|.+..+.|+. .+++.. ....+ .+.++..+. .+.++=.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~-~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~ 116 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDG-GTSFLTLDLNAIRENIEKLPWVKSAEVRRQ 116 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhcc-CCceEEEcHHHHHHHHHhCCCeEEEEEEEe
Confidence 55566667777788888999999999999984 333310 01111 123444433 5666667
Q ss_pred cCCceeEEEEc-CceEEEEE
Q 022177 182 NPATFFGIHVS-SSPVNLMF 200 (301)
Q Consensus 182 NPN~~~gI~Y~-~~~v~l~Y 200 (301)
=||+ +.|+.. ..++.+.-
T Consensus 117 ~Pnt-v~I~v~Er~piA~w~ 135 (269)
T COG1589 117 FPNT-LEIEVVEREPIAYWQ 135 (269)
T ss_pred CCCc-EEEEEEEeeeEEEEe
Confidence 8996 778776 44444443
No 57
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=45 Score=30.90 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=3.4
Q ss_pred hhhhHHHHH
Q 022177 113 CQILIALLG 121 (301)
Q Consensus 113 c~~~~~~~~ 121 (301)
|.++|+++.
T Consensus 213 ~~~~~~il~ 221 (235)
T KOG3202|consen 213 CSQWCAILL 221 (235)
T ss_pred ccchhHHHH
Confidence 333344333
No 58
>PHA03049 IMV membrane protein; Provisional
Probab=25.38 E-value=30 Score=25.79 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhheeeeeecC
Q 022177 120 LGFVLVFSIFCLIIWGASRP 139 (301)
Q Consensus 120 ~~~vlllgi~~LIlwlv~RP 139 (301)
+++++.++++.||+|++++-
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34566677788888888754
No 59
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=25.23 E-value=87 Score=27.75 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHhheeeeeecCCCc
Q 022177 122 FVLVFSIFCLIIWGASRPYKA 142 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P 142 (301)
+.+++++++.++..++.|..|
T Consensus 11 la~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 11 LALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHhheeeEEEccCCC
Confidence 455666677777888999876
No 60
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=24.93 E-value=43 Score=30.77 Aligned_cols=7 Identities=14% Similarity=-0.173 Sum_probs=3.3
Q ss_pred hhHHHHH
Q 022177 115 ILIALLG 121 (301)
Q Consensus 115 ~~~~~~~ 121 (301)
|+.|+++
T Consensus 228 ~~~~~~i 234 (251)
T PF09753_consen 228 CWTWLMI 234 (251)
T ss_pred HHHHHHH
Confidence 4555444
No 61
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.71 E-value=37 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.780 Sum_probs=16.6
Q ss_pred HHHHHHHHhheeeeeecCCC
Q 022177 122 FVLVFSIFCLIIWGASRPYK 141 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~ 141 (301)
|+++++.+++++|.+.+|..
T Consensus 16 flai~~s~~~~~~~s~~P~~ 35 (161)
T COG5353 16 FLAIILSIALFFWKSMKPYH 35 (161)
T ss_pred HHHHHHHHHHHHhHhcCccc
Confidence 77788888899999998853
No 62
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=24.30 E-value=33 Score=28.00 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=10.8
Q ss_pred hheeeeeecCC--CcEEEEE
Q 022177 130 CLIIWGASRPY--KAKIAVR 147 (301)
Q Consensus 130 ~LIlwlv~RP~--~P~~~V~ 147 (301)
+||+||++-=+ .|.|.|.
T Consensus 10 ~li~~Lv~~~r~~~~vf~i~ 29 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFEIH 29 (108)
T ss_pred HHHHHHHHccccCceEEEEE
Confidence 37778766443 3666654
No 63
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.17 E-value=26 Score=28.59 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=8.1
Q ss_pred hheeeeeecCCCcE
Q 022177 130 CLIIWGASRPYKAK 143 (301)
Q Consensus 130 ~LIlwlv~RP~~P~ 143 (301)
+++.|+.+||++=+
T Consensus 15 ~i~yF~~iRPQkKr 28 (109)
T PRK05886 15 GGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHccHHHHH
Confidence 33345678996543
No 64
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=23.30 E-value=96 Score=21.64 Aligned_cols=20 Identities=35% Similarity=0.364 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhheeee
Q 022177 116 LIALLGFVLVFSIFCLIIWG 135 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwl 135 (301)
+++.++|+++=.+|.+|+|.
T Consensus 8 fiAtaLFi~iPT~FLlilYV 27 (50)
T PRK14094 8 FVASLLFVGVPTIFLIGLFI 27 (50)
T ss_pred HHHHHHHHHHHHHHhhheeE
Confidence 44444577777888888884
No 65
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.85 E-value=1.1e+02 Score=25.63 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=6.8
Q ss_pred EcCceEEEEECCe
Q 022177 191 VSSSPVNLMFSEI 203 (301)
Q Consensus 191 Y~~~~v~l~Y~g~ 203 (301)
|=...+.+.+.+.
T Consensus 64 ylk~~i~l~~~~~ 76 (142)
T PRK07718 64 FIRIQFKIETDSK 76 (142)
T ss_pred EEEEEEEEEECCH
Confidence 4345556655543
No 66
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=22.47 E-value=56 Score=31.34 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=23.7
Q ss_pred CCcccchhhhHHHHH-HHHHHHHHhheee---eeecCCCcEEE
Q 022177 107 KGYTRRCQILIALLG-FVLVFSIFCLIIW---GASRPYKAKIA 145 (301)
Q Consensus 107 ~~~~R~c~~~~~~~~-~vlllgi~~LIlw---lv~RP~~P~~~ 145 (301)
|...+++++++..++ .++|.+++++.+| ..+-|+.|++.
T Consensus 39 RT~~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~ 81 (300)
T KOG3927|consen 39 RTGSSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK 81 (300)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 445566665444444 4445555555555 35679999998
No 67
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=22.39 E-value=42 Score=28.99 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHHHHHHhheeeeeecCCCcEEEEE--EEEEeeE
Q 022177 122 FVLVFSIFCLIIWGASRPYKAKIAVR--SLTVHNF 154 (301)
Q Consensus 122 ~vlllgi~~LIlwlv~RP~~P~~~V~--s~~v~~f 154 (301)
+++++.+++||.|...|=++--..++ ++.+.+.
T Consensus 39 vVliiiiivli~lcssRKkKaaAAi~eediQfinp 73 (189)
T PF05568_consen 39 VVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFINP 73 (189)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccCc
Confidence 45556667778888888877554444 4444443
No 68
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=22.33 E-value=32 Score=28.84 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHhheeeeeecCCCcEEEE
Q 022177 113 CQILIALLGFVLVFSIFCLIIWGASRPYKAKIAV 146 (301)
Q Consensus 113 c~~~~~~~~~vlllgi~~LIlwlv~RP~~P~~~V 146 (301)
+||++-|-+.++++|+++-.+...+.++...+.+
T Consensus 49 Yrci~pfG~vili~GvvvT~vays~n~~~si~~~ 82 (129)
T PF15099_consen 49 YRCIMPFGVVILIAGVVVTAVAYSFNSHGSIISI 82 (129)
T ss_pred EEEEEEehHHHHHHhhHhheeeEeecCCcchhhh
Confidence 3455555567888888888777667666654443
No 69
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.85 E-value=5.1e+02 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=11.0
Q ss_pred CceeEEEEcCceEEEEECC-eEeeeeec
Q 022177 184 ATFFGIHVSSSPVNLMFSE-IAVATGQL 210 (301)
Q Consensus 184 N~~~gI~Y~~~~v~l~Y~g-~~la~g~l 210 (301)
...+.|.|..+-=++|=.| ..++.|.+
T Consensus 88 ~~~v~V~Y~GilPDlFrEG~gVVveG~~ 115 (160)
T PRK13165 88 GGSVTVTYEGILPDLFREGQGIVAQGVL 115 (160)
T ss_pred CeEEEEEEcccCCccccCCCeEEEEEEE
Confidence 3345555554333333222 22345544
No 70
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=21.41 E-value=75 Score=24.83 Aligned_cols=14 Identities=29% Similarity=0.524 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHhh
Q 022177 118 ALLGFVLVFSIFCL 131 (301)
Q Consensus 118 ~~~~~vlllgi~~L 131 (301)
|+++|++++.++.|
T Consensus 42 ~~lVfVii~lFi~l 55 (84)
T PF06143_consen 42 CFLVFVIIVLFILL 55 (84)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334433333333
No 71
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.06 E-value=70 Score=25.35 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.1
Q ss_pred HHHHhh
Q 022177 126 FSIFCL 131 (301)
Q Consensus 126 lgi~~L 131 (301)
|++++|
T Consensus 13 LA~lLl 18 (95)
T PF07172_consen 13 LAALLL 18 (95)
T ss_pred HHHHHH
Confidence 333333
No 72
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=20.85 E-value=57 Score=29.68 Aligned_cols=23 Identities=17% Similarity=0.506 Sum_probs=12.5
Q ss_pred cchhhhHHHHH--HHHHHHHHhhee
Q 022177 111 RRCQILIALLG--FVLVFSIFCLII 133 (301)
Q Consensus 111 R~c~~~~~~~~--~vlllgi~~LIl 133 (301)
|.|++.+|.++ ++++-|++++|+
T Consensus 278 rvccyavcvlvvs~limsgllaii~ 302 (303)
T PF07184_consen 278 RVCCYAVCVLVVSLLIMSGLLAIIF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcchheEe
Confidence 44545555444 666666665553
No 73
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.55 E-value=3.5e+02 Score=23.51 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=11.6
Q ss_pred CceeEEEEcCceEEEEECC-eEeeeeec
Q 022177 184 ATFFGIHVSSSPVNLMFSE-IAVATGQL 210 (301)
Q Consensus 184 N~~~gI~Y~~~~v~l~Y~g-~~la~g~l 210 (301)
+..+.|.|+.+-=++|=.| -.|+.|.+
T Consensus 82 ~~~v~V~Y~GilPDlFrEGqgVVaeG~~ 109 (155)
T PRK13159 82 NAATQVEYTGILPDLFRDNQSVIANGRM 109 (155)
T ss_pred CcEEEEEEccCCCccccCCCeEEEEEEE
Confidence 3345555554433333222 22455554
No 74
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=20.03 E-value=65 Score=26.69 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHH
Q 022177 113 CQILIALLGFVL 124 (301)
Q Consensus 113 c~~~~~~~~~vl 124 (301)
||++|++|+|.|
T Consensus 4 cRLLCalLvlaL 15 (143)
T PF01456_consen 4 CRLLCALLVLAL 15 (143)
T ss_pred HHHHHHHHHHHH
Confidence 788888655443
Done!