Query 022177
Match_columns 301
No_of_seqs 189 out of 698
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.0 1.9E-05 6.6E-10 68.2 9.3 104 140-261 43-148 (174)
2 1xo8_A AT1G01470; structural g 97.5 1.2E-05 4.1E-10 67.8 -0.2 104 140-261 20-125 (151)
3 3but_A Uncharacterized protein 97.1 0.0024 8.2E-08 52.8 9.0 60 171-231 17-77 (136)
4 2k1a_A Integrin alpha-IIB; sin 55.6 6.4 0.00022 25.8 2.0 28 115-142 13-42 (42)
5 2knc_A Integrin alpha-IIB; tra 51.7 6.7 0.00023 27.1 1.7 28 115-142 15-44 (54)
6 2knc_B Integrin beta-3; transm 50.7 7 0.00024 28.9 1.8 20 116-135 14-33 (79)
7 2l8s_A Integrin alpha-1; trans 45.3 8.2 0.00028 26.6 1.3 28 115-142 12-41 (54)
8 3s8f_C Cytochrome C oxidase po 43.9 8.3 0.00029 24.1 1.1 18 118-135 7-24 (34)
9 2lk9_A Bone marrow stromal ant 43.1 9 0.00031 23.9 1.1 20 112-131 2-23 (35)
10 2k9j_B Integrin beta-3; transm 38.7 16 0.00053 23.9 1.8 17 118-134 15-31 (43)
11 3hd7_B Syntaxin-1A; membrane p 37.2 17 0.0006 28.1 2.3 9 111-119 83-91 (109)
12 3d8m_A BPP, baseplate protein, 32.9 53 0.0018 27.6 4.6 54 166-221 63-120 (165)
13 1nwd_B GAD, glutamate decarbox 31.1 7.1 0.00024 22.6 -0.7 9 3-11 3-11 (28)
14 3kdp_B Sodium/potassium-transp 24.1 29 0.001 31.7 1.7 24 122-145 26-52 (286)
15 2l6w_A Beta-type platelet-deri 29.0 17 0.00059 23.3 0.0 16 129-144 23-38 (39)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.03 E-value=1.9e-05 Score=68.20 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=79.9
Q ss_pred CCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCc-ccccCC
Q 022177 140 YKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRK-YYQPRK 218 (301)
Q Consensus 140 ~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~-F~Q~~k 218 (301)
++|+++|.++.+..+.... ..+.++|.++|||. +.|-+..+...|.-.|..||+|..+. +..++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 8999999999999876542 56778899999995 89999999999999999999998875 788999
Q ss_pred CEEEEEEEEEeeeeecCCCcccceecc-CCceEEEEEEEEEEEE
Q 022177 219 SHRVVTVNLQGNKVPLYGAGAGLAVSD-GNRRVPLLLVFEVRQR 261 (301)
Q Consensus 219 s~~~v~v~v~g~~vpL~g~g~~L~~d~-~~g~VpL~l~~~~r~R 261 (301)
+++.+.+.+...-..+. .+..++ ....++.++++.+.+.
T Consensus 109 g~~~v~Vpv~v~~~~l~----~~~~~l~~~~~i~Y~L~g~L~id 148 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIAV----SLMKDMCTDWDIDYQLDIGLTFD 148 (174)
T ss_dssp EEEEEEEEEEESHHHHH----HTCCCCCSSEEECEEEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHHH----HHHHhcCCCCccceEEEEEEEec
Confidence 99999988875421111 122222 3467777777766543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.52 E-value=1.2e-05 Score=67.84 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=77.0
Q ss_pred CCcEEEEEEEEEeeEEecCCCCCCCCccceeEEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCc-ccccCC
Q 022177 140 YKAKIAVRSLTVHNFYFGEGADLTGVPTKMLTMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRK-YYQPRK 218 (301)
Q Consensus 140 ~~P~~~V~s~~v~~f~v~~g~d~tGvpt~~ls~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~-F~Q~~k 218 (301)
++|+++|.++.+..+... ...+.+++.++|||. +.|.+......+.-.|..||+|..+. +..+++
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------------~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcc-------------eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 789999999998765432 356778899999995 89999999999999999999998874 888999
Q ss_pred CEEEEEEEEEeeeeecCCCcccceecc-CCceEEEEEEEEEEEE
Q 022177 219 SHRVVTVNLQGNKVPLYGAGAGLAVSD-GNRRVPLLLVFEVRQR 261 (301)
Q Consensus 219 s~~~v~v~v~g~~vpL~g~g~~L~~d~-~~g~VpL~l~~~~r~R 261 (301)
+++.+.+.+...-. +-..+..++ ....++.++++.+.+.
T Consensus 86 g~~~v~vpv~v~~~----~l~~~~~~l~~~~~i~Y~l~g~l~i~ 125 (151)
T 1xo8_A 86 DMTALDIPVVVPYS----ILFNLARDVGVDWDIDYELQIGLTID 125 (151)
T ss_dssp SEEEEEECCCEEHH----HHHHHHHHHHHHSEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEHH----HHHHHHHhcccCCcccEEEEEEEEEc
Confidence 99998887764411 111222222 3457888777776543
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.09 E-value=0.0024 Score=52.84 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=52.8
Q ss_pred EEEEEEEEEEecCCceeEEEEcCceEEEEECCeEeeeee-cCcccccCCCEEEEEEEEEeee
Q 022177 171 TMNCSVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQ-LRKYYQPRKSHRVVTVNLQGNK 231 (301)
Q Consensus 171 s~n~tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~-lp~F~Q~~ks~~~v~v~v~g~~ 231 (301)
...+.++|.+.|||. +.+-++.....|...|..||+|. ...+..++.+.+.+.+.+..+.
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~ 77 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNN 77 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEch
Confidence 467888999999995 89999999999999999999997 5678889999999988887664
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=55.63 E-value=6.4 Score=25.75 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHhheee--eeecCCCc
Q 022177 115 ILIALLGFVLVFSIFCLIIW--GASRPYKA 142 (301)
Q Consensus 115 ~~~~~~~~vlllgi~~LIlw--lv~RP~~P 142 (301)
+++++++-+++++++++++| +.|+-+.|
T Consensus 13 Ii~s~l~GLllL~li~~~LwK~GFFkR~~~ 42 (42)
T 2k1a_A 13 VLVGVLGGLLLLTILVLAMWKVGFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 45555557778888888888 66665554
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.67 E-value=6.7 Score=27.08 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHhheee--eeecCCCc
Q 022177 115 ILIALLGFVLVFSIFCLIIW--GASRPYKA 142 (301)
Q Consensus 115 ~~~~~~~~vlllgi~~LIlw--lv~RP~~P 142 (301)
+++++++-+++++++++++| +.|+-+.|
T Consensus 15 Ii~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 45555557778888889999 77766554
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.73 E-value=7 Score=28.91 Aligned_cols=20 Identities=30% Similarity=0.866 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhheeee
Q 022177 116 LIALLGFVLVFSIFCLIIWG 135 (301)
Q Consensus 116 ~~~~~~~vlllgi~~LIlwl 135 (301)
++++++.++++|+++|++|-
T Consensus 14 v~gvi~gilliGllllliwk 33 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445578888998888884
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=45.25 E-value=8.2 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHhheee--eeecCCCc
Q 022177 115 ILIALLGFVLVFSIFCLIIW--GASRPYKA 142 (301)
Q Consensus 115 ~~~~~~~~vlllgi~~LIlw--lv~RP~~P 142 (301)
+++++++-+++++++++++| +.||-+.|
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 45555557778888899999 77776655
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=43.94 E-value=8.3 Score=24.10 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhheeee
Q 022177 118 ALLGFVLVFSIFCLIIWG 135 (301)
Q Consensus 118 ~~~~~vlllgi~~LIlwl 135 (301)
..+..++++|++++++|+
T Consensus 7 GTl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHH
Confidence 344566677778887774
No 9
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=43.14 E-value=9 Score=23.86 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=7.3
Q ss_pred chhhhHHH--HHHHHHHHHHhh
Q 022177 112 RCQILIAL--LGFVLVFSIFCL 131 (301)
Q Consensus 112 ~c~~~~~~--~~~vlllgi~~L 131 (301)
||++.++. +++++++++.++
T Consensus 2 RcKL~lg~Gvl~LLviV~LgV~ 23 (35)
T 2lk9_A 2 RSKLLLGIGILVLLIIVILGVP 23 (35)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecccHHHHHHHHHhcch
Confidence 57766553 333334444333
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=38.65 E-value=16 Score=23.89 Aligned_cols=17 Identities=29% Similarity=0.907 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhheee
Q 022177 118 ALLGFVLVFSIFCLIIW 134 (301)
Q Consensus 118 ~~~~~vlllgi~~LIlw 134 (301)
+.++.++++|+++|++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34447788999999888
No 11
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=37.25 E-value=17 Score=28.12 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=3.8
Q ss_pred cchhhhHHH
Q 022177 111 RRCQILIAL 119 (301)
Q Consensus 111 R~c~~~~~~ 119 (301)
|+|+|+|.+
T Consensus 83 rkk~~i~l~ 91 (109)
T 3hd7_B 83 RRKKIMIII 91 (109)
T ss_dssp HHHHHHHHH
T ss_pred cCcceehHH
Confidence 444344433
No 12
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=32.85 E-value=53 Score=27.59 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=39.0
Q ss_pred ccceeEEEE----EEEEEEecCCceeEEEEcCceEEEEECCeEeeeeecCcccccCCCEE
Q 022177 166 PTKMLTMNC----SVKMNVYNPATFFGIHVSSSPVNLMFSEIAVATGQLRKYYQPRKSHR 221 (301)
Q Consensus 166 pt~~ls~n~----tv~l~vrNPN~~~gI~Y~~~~v~l~Y~g~~la~g~lp~F~Q~~ks~~ 221 (301)
|++.++++. ++.++-+| |..+.|++...- ...|.|..++.+.+|.-|+|.+.+-
T Consensus 63 pt~s~t~q~gnG~tl~ltkk~-~d~V~v~~~G~v-t~i~sg~~~~g~wvp~~f~P~~~~s 120 (165)
T 3d8m_A 63 PVQTLTVEAGNGLQLQLTKKN-NDLVIVRFFGSV-SNIQKGWNMSGTWVDRPFRPAAVQS 120 (165)
T ss_dssp CEEEEEEECSTTEEEEEEEET-TTEEEEEEEEEE-CSBCTTCBCCSCCCCGGGCCSSCEE
T ss_pred cceeEEEEeCCCcEEEEEEcc-CCEEEEEEeeEE-EeEEccceeecceecCCccccceeE
Confidence 555555443 67788888 777878776543 6777898888889998888776643
No 13
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=31.09 E-value=7.1 Score=22.64 Aligned_cols=9 Identities=56% Similarity=0.863 Sum_probs=6.9
Q ss_pred CcCCCCccc
Q 022177 3 HAKSDSDVT 11 (301)
Q Consensus 3 ~~~~~s~~t 11 (301)
|.||||||.
T Consensus 3 hkktdsevq 11 (28)
T 1nwd_B 3 HKKTDSEVQ 11 (28)
T ss_dssp SSCCHHHHH
T ss_pred CccchHHHH
Confidence 778888873
No 14
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=24.12 E-value=29 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=15.5
Q ss_pred HHHHHHHHhheee---eeecCCCcEEE
Q 022177 122 FVLVFSIFCLIIW---GASRPYKAKIA 145 (301)
Q Consensus 122 ~vlllgi~~LIlw---lv~RP~~P~~~ 145 (301)
-++|+|+|++.+| ..+-|+.|++.
T Consensus 26 Y~~La~lFa~~m~v~l~TLd~~~Pkyq 52 (286)
T 3kdp_B 26 YGCLAGIFIGTIQVMLLTISEFKPTYQ 52 (286)
T ss_dssp HHHHHHHHHHHHHGGGSCSCSSSCSCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCccc
Confidence 3445555555554 45789999988
No 15
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=29.02 E-value=17 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=8.4
Q ss_pred HhheeeeeecCCCcEE
Q 022177 129 FCLIIWGASRPYKAKI 144 (301)
Q Consensus 129 ~~LIlwlv~RP~~P~~ 144 (301)
++||+..+.--|+|++
T Consensus 23 isLIiLi~~w~qKPrY 38 (39)
T 2l6w_A 23 ISLIILIMLWQKKPRY 38 (39)
Confidence 3444434444677775
Done!