BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022178
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DO8|A Chain A, Solution Structure Of Upf0301 Protein Hd_1794
Length = 188
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
+G +IAT ++D + F+RTVI + G G+I+N P+ +S+ E+ + + +
Sbjct: 6 QGKFIIATPEMDDEY-FDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPR 64
Query: 179 TFS-DRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
++ D+ + GGP+ + F+V K + V + + T+ + +++
Sbjct: 65 IYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHSYKVTDDI----------TLTTSGDVLD 114
Query: 237 R--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
PE F GC W+ QL +EI YW ++ + +
Sbjct: 115 SFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTL 158
>pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From
Acinetobacter Sp. Adp1. Northeast Structural Genomics
Consortium Target Asr1
Length = 192
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 124 CLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSDR 183
CL+ E D F TVI L + G GII+NRP+ + IKE+ + + A +
Sbjct: 10 CLIAPPEXADD--FFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVNPH 67
Query: 184 PLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG 241
+ GGPL E G L + G S + V E + T + + A + VG
Sbjct: 68 EVLQGGPLRPEAGFVLHT----GQPTWHSSI--AVGENVCITTSKDILDA--IAHNEGVG 119
Query: 242 PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
++ G W K QL +EI G W + +I
Sbjct: 120 R--YQIALGYASWGKNQLEDEIARGDWLICDADXDLI 154
>pdb|2GZO|A Chain A, Nmr Structure Of Upf0301 Protein So3346 From Shewanella
Oneidensis: Northeast Structural Genomics Consortium
Target Sor39
Length = 195
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRP------SLMSIKEMRST 172
E + LIA LD FERTVI L + G G+++N+P SL+ ++ +
Sbjct: 2 ESLQNHFLIAMPSLDDT-FFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMDLPTE 60
Query: 173 VLDAAGTFSDRPLFFGGPLEE--GLFLVSPK---GGGDEVGKSGVFEQVMEGLYFGTKET 227
+ A + L GGP+ + G L + + E+G GL T
Sbjct: 61 QVSADLAMGSQVL-MGGPVSQDRGFVLHTSQPYWANSTELGS---------GLMLTTSRD 110
Query: 228 VGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYW 268
V A KR+ P+ F G GW K QL +E+ W
Sbjct: 111 V-LTAIGSKRS---PDKFLVALGYAGWSKNQLEQELADNSW 147
>pdb|2GS5|A Chain A, 1.5 A Crystal Structure Of A Conserved Protein Of Unknown
Function From Corvnebacterium Diphtheriae
Length = 198
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 118 HEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA 177
+EP G +L+A + F R+VIL++ G+ L S +++ + +
Sbjct: 13 NEPAPGXVLVAAPSXES-EDFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPC- 70
Query: 178 GTFSDRPLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
+ L+ GGPL ++ + V G + + ++ L +G E +K
Sbjct: 71 -VTKPQALYIGGPLNQQSVVGVGVTAQGVDAARVDNLTRLANRL---VXVNLGADPEEIK 126
Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPS 276
G R F G W QL +EI G W VA PS
Sbjct: 127 PLVSG---XRLFAGHAEWAPGQLAQEIENGDWFVAPALPS 163
>pdb|2HRX|A Chain A, X-Ray Crystal Structure Of Protein Dip2367 From
Corynebacterium Diphtheriae. Northeast Structural
Genomics Consortium Target Cdr13
Length = 207
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 118 HEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA 177
+EP G +L+A + F R+VIL++ G+ L S +++ + +
Sbjct: 13 NEPAPGXVLVAAPSXES-EDFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPC- 70
Query: 178 GTFSDRPLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
+ L+ GGPL ++ + V G + + ++ L +G E +K
Sbjct: 71 -VTKPQALYIGGPLNQQSVVGVGVTAQGVDAARVDNLTRLANRL---VXVNLGADPEEIK 126
Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPS 276
G R F G W QL +EI G W VA PS
Sbjct: 127 PLVSG---XRLFAGHAEWAPGQLAQEIENGDWFVAPALPS 163
>pdb|2HAF|A Chain A, Crystal Structure Of A Putative Translation Repressor From
Vibrio Cholerae
Length = 211
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 18/149 (12%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGTFS-----DRPLFFGGPL 191
F+R+VI + G G+++N P +++ M V ++ A S +P+F GGP+
Sbjct: 34 FKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAYPQSHQENLKKPVFNGGPV 93
Query: 192 EE--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFD 249
E G L P+ + K + + + +G AE PE +
Sbjct: 94 SEDRGFILHRPRDHYESSMK--MTDDIAVTTSKDILTVLGTEAE--------PEGYIVAL 143
Query: 250 GCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
G GW QL E+ W P +I
Sbjct: 144 GYSGWSAGQLEVELTENSWLTIEADPELI 172
>pdb|2AJ2|A Chain A, X-Ray Crystal Structure Of Protein Vc0467 From Vibrio
Cholerae. Northeast Structural Genomics Consortium
Target Vcr8
Length = 208
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 18/149 (12%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIK-EMRSTVLDAAGTFS-----DRPLFFGGPL 191
F+R+VI + G G+ +N P +++ ++ ++ A S +P+F GGP+
Sbjct: 32 FKRSVIYICEHNQDGAXGLXINAPIDITVGGXLKQVDIEPAYPQSHQENLKKPVFNGGPV 91
Query: 192 EE--GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFD 249
E G L P+ + K V T +G AE PE +
Sbjct: 92 SEDRGFILHRPRDHYESSXKXTDDIAVTTSKDILT--VLGTEAE--------PEGYIVAL 141
Query: 250 GCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
G GW QL E+ W P +I
Sbjct: 142 GYSGWSAGQLEVELTENSWLTIEADPELI 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,928,640
Number of Sequences: 62578
Number of extensions: 364257
Number of successful extensions: 593
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 7
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)