BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022178
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B561|Y637_PELLD UPF0301 protein Plut_0637 OS=Pelodictyon luteolum (strain DSM 273)
GN=Plut_0637 PE=3 SV=1
Length = 189
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 22/161 (13%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS- 181
G LLIA+ L + F+RTV+++ P G G ILNRP M V +A F
Sbjct: 13 GKLLIASANLLESN-FKRTVLMMCEHNPQGSLGFILNRP-------MEFQVREAVAGFDE 64
Query: 182 -DRPLFFGGPLEEGL--FLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKR 237
D PL GGP++ FL GD + S EQ++ GLY+G +E +G ++
Sbjct: 65 VDEPLHMGGPVQSNTVHFLHMR---GDLIDGS---EQILPGLYWGGDREELGY---LLNT 115
Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ P + RFF G GW QL E G W A +P+++
Sbjct: 116 GVLKPSEIRFFLGYAGWSAGQLEAEFEEGSWYTADATPAMV 156
>sp|Q12KS3|Y2674_SHEDO UPF0301 protein Sden_2674 OS=Shewanella denitrificans (strain OS217
/ ATCC BAA-1090 / DSM 15013) GN=Sden_2674 PE=3 SV=1
Length = 184
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 31/188 (16%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGTF 180
K LLIA LDG FERTVI + + G GI++NRP +S++ + + LDA
Sbjct: 5 KNHLLIAMPSLDG-SFFERTVIYVCEHDEKGAMGIVINRPIGLSVEALLIQMDLDAEANL 63
Query: 181 SDRP-LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR 237
SD + GGP+ + G L SP+ +V + E V + T +
Sbjct: 64 SDDAQVLIGGPVLPDRGFVLHSPE----KVWTNS--EAVSDYCTLTTSRDI--------L 109
Query: 238 NAVG----PEDFRFFDGCCGWEKEQLNEEIRAGYW-TVAACSPSVIGLESGTLGLWEELL 292
NA+G P F+ G GW K+QL +E+ W T+ A S V ++ E L
Sbjct: 110 NAIGSADAPSQFKVALGYSGWSKDQLEQELADNTWLTIKASSELVFDVDY-------EQL 162
Query: 293 WLMGRRKV 300
W + +++
Sbjct: 163 WTLATKEL 170
>sp|B3EHS7|Y777_CHLL2 UPF0301 protein Clim_0777 OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=Clim_0777 PE=3 SV=1
Length = 187
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSD 182
G LL+A+ L + F+RTV+L+ G G ILNRP M V +A F D
Sbjct: 11 GKLLLASANLLESN-FKRTVLLMCEHNEQGSMGFILNRP-------MEFKVCEAIAGFED 62
Query: 183 --RPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNA 239
PL GGP++ + + + +G + G +F+ V G G K+ + + ++
Sbjct: 63 IEEPLHMGGPVQVDTVHFIHSRGDSID-GAIEIFDGVFWG---GDKDQL---SYLINTGV 115
Query: 240 VGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ P + RFF G GW QL +E G W A + +I
Sbjct: 116 INPNEIRFFLGYSGWGAGQLEQEFEEGSWYTADATREMI 154
>sp|B3QMC9|Y662_CHLP8 UPF0301 protein Cpar_0662 OS=Chlorobaculum parvum (strain NCIB
8327) GN=Cpar_0662 PE=3 SV=1
Length = 187
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS- 181
G LLIA+ L + F+RTV+L+ G G ILN+P M V +A F
Sbjct: 11 GKLLIASANLLESN-FKRTVLLMCEHNDEGSIGFILNKP-------MEFKVCEAISGFDE 62
Query: 182 -DRPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKRN 238
D PL GGP++ + + + +G D + + ++V+ GL++G KE + + ++
Sbjct: 63 IDEPLHMGGPVQVDTVHFLHTRG--DVIDDA---QEVLPGLFWGGDKEQL---SYLINTG 114
Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACS 274
+ P + RFF G GW QL +E G W A S
Sbjct: 115 VIRPSEVRFFLGYAGWSAGQLKDEFEEGSWYTADAS 150
>sp|A6LBX4|Y1431_PARD8 UPF0301 protein BDI_1431 OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=BDI_1431 PE=3 SV=1
Length = 198
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 112 KWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRS 171
K H P +G +LIA L + F+R+V+LL+ G G +LN+ + + + +
Sbjct: 9 KITHNDVLPIQGSILIAEPFLQDAY-FQRSVVLLIEHTEHGSMGFVLNKKTDLIV----N 63
Query: 172 TVLDAAGTFSDRPLFFGGPLEEG-LFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGC 230
+ F + P++ GGP+ LF + G D + + ++ + LYF
Sbjct: 64 SFFKEFAEFPEIPIYLGGPVSPNRLFFIHSLG--DNIIPDAL--KINDYLYFDGD----- 114
Query: 231 AAEMVKRNAVG--PED--FRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLG 286
+KR + P D +FF G GW + QLN EI+ W V+ + I L + G
Sbjct: 115 -FNALKRYILNGHPIDGKVKFFLGYSGWTEGQLNHEIKRNSWAVSHITTDNI-LSADGEG 172
Query: 287 LWEELLWLMGR-RKVW 301
W++ + L+G K W
Sbjct: 173 YWKDSVELLGNDYKTW 188
>sp|Q3AQ69|Y1601_CHLCH UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain
CaD3) GN=Cag_1601 PE=3 SV=1
Length = 188
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 117 IHEPEK---GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV 173
++E EK G LL+A+ + + F+RTV+L+ G G ILNRP ++E
Sbjct: 3 VNEFEKLTAGKLLLASATMLESN-FKRTVLLMCEHNEEGSLGFILNRPLEFKVREAIHGF 61
Query: 174 LDAAGTFSDRPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCA 231
D D L GGP++ + + +G D + S ++V+ G+Y+G K+ V
Sbjct: 62 NDV-----DDVLHQGGPVQVNSIHFLHSRG--DLIHNS---QEVLPGIYWGGNKDEV--- 108
Query: 232 AEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ ++ + P + RF+ G GW QL E G W A +P VI
Sbjct: 109 SYLLNTGVMHPSEIRFYLGYAGWSAGQLFSEFEEGAWYTAEATPDVI 155
>sp|A1BEV6|Y885_CHLPD UPF0301 protein Cpha266_0885 OS=Chlorobium phaeobacteroides (strain
DSM 266) GN=Cpha266_0885 PE=3 SV=1
Length = 187
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 121 EKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTF 180
+ G LL+A+ L + F+RTV+++ G G ILNRP M V +A F
Sbjct: 9 QSGKLLLASANLLESN-FKRTVLIICEHNESGSLGFILNRP-------MEFKVCEAVAGF 60
Query: 181 SD--RPLFFGGPLEEGL--FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
+ PL GGP++ FL S GD + + ++ GL++G + + ++
Sbjct: 61 EEIEEPLHMGGPVQVDTVHFLHSR---GDIIDGA---TEIFPGLFWGGDKN--QVSFLLN 112
Query: 237 RNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ P + RFF G GW QL EE G W +A S VI
Sbjct: 113 TGVMQPSEIRFFLGYSGWSAGQLEEEFEIGSWYIAEASRDVI 154
>sp|B0BSN9|Y237_ACTPJ UPF0301 protein APJL_0237 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=APJL_0237 PE=3 SV=1
Length = 186
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
E +G LIAT ++D + F+RTVI + G G+++N P+ +S+ E M +
Sbjct: 3 ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61
Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
+ D+ + GGP+ + F++ K + + V + ++ +++G
Sbjct: 62 NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117
Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
PE F GC W+ EQL +EI YW ++ + + E+G L W E
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172
Query: 294 LMG 296
++G
Sbjct: 173 MLG 175
>sp|B3H074|Y234_ACTP7 UPF0301 protein APP7_0234 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=APP7_0234 PE=3 SV=1
Length = 186
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
E +G LIAT ++D + F+RTVI + G G+++N P+ +S+ E M +
Sbjct: 3 ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61
Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
+ D+ + GGP+ + F++ K + + V + ++ +++G
Sbjct: 62 NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117
Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
PE F GC W+ EQL +EI YW ++ + + E+G L W E
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172
Query: 294 LMG 296
++G
Sbjct: 173 MLG 175
>sp|A3MYV4|Y232_ACTP2 UPF0301 protein APL_0232 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=APL_0232 PE=3 SV=1
Length = 186
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE----MRSTVL 174
E +G LIAT ++D + F+RTVI + G G+++N P+ +S+ E M +
Sbjct: 3 ENLQGKFLIATPEIDDDY-FDRTVIYICEHNSNGAMGLVINTPTDLSVLELITRMDFQMA 61
Query: 175 DAAGTFSDRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
+ D+ + GGP+ + F++ K + + V + ++ +++G
Sbjct: 62 NQRNYHKDQMVLSGGPVSQDRGFIIHTKTEQEFLHSYRVTDNILLTTSGDVLDSLG---- 117
Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLW 293
PE F GC W+ EQL +EI YW ++ + + E+G L W E
Sbjct: 118 ----KPEAPEKFIVCLGCATWKPEQLEQEIARNYWLISEANDKTL-FETGYLERWVEANE 172
Query: 294 LMG 296
++G
Sbjct: 173 MLG 175
>sp|A6VSP6|Y539_MARMS UPF0301 protein Mmwyl1_0539 OS=Marinomonas sp. (strain MWYL1)
GN=Mmwyl1_0539 PE=3 SV=1
Length = 188
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 67/168 (39%), Gaps = 29/168 (17%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRST--VLDAAGT 179
K LI+ LD H FE TVI L G GII+NRPS + E+ + +
Sbjct: 9 KNHFLISMPHLDDPH-FEHTVIYLCEHTKAGAMGIIINRPSNVDFTELADHLGIQIHSPR 67
Query: 180 FSDRPLFFGGPLE-EGLFLVSPKGG--------GDEVGKSGVFEQVMEGLYFGTKETVGC 230
S P++ GGP+E E F++ DEV S E +E + G
Sbjct: 68 LSSEPIYTGGPVEAERGFILHTTDKVWSNTLRVTDEVSLSASLE-ALEDIAQGN------ 120
Query: 231 AAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
GP+ FR GC GW+ QL EI W V V+
Sbjct: 121 ----------GPDAFRITLGCAGWDAGQLEAEIANNDWLVCEADLDVL 158
>sp|Q11U74|Y1773_CYTH3 UPF0301 protein CHU_1773 OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=CHU_1773 PE=3 SV=1
Length = 182
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS 181
KG +LI+ L G FER+V+LL G G +LN+ + ++I ++VL+ TF
Sbjct: 4 KGKILISEPYL-GDSTFERSVVLLCEHNDSGAFGFMLNKSTTLTI----NSVLEEQLTF- 57
Query: 182 DRPLFFGGPL-EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAV 240
++ LF GGP+ ++ LF + + + K V + + LY+G +++ +
Sbjct: 58 EQNLFLGGPVAQDSLFFLLRQDRA--ILKDSV--HIKDDLYWGGD--FEHLKTLIQEGTL 111
Query: 241 GPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
++ RFF G GW ++QL E+ W +A + + +++ +W+ +L MG
Sbjct: 112 ELDNCRFFLGYSGWGEDQLEYELEKHSWIIADINSEDMFVKNPE-SMWQNVLRSMG 166
>sp|Q1GZH1|Y2099_METFK UPF0301 protein Mfla_2099 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=Mfla_2099 PE=3 SV=1
Length = 189
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIKEM-RSTVLDAAGTFSDRPLFFGGP--LEEG 194
F ++V + G GI++NRP M+++++ + L AG +D+P++FGGP L+ G
Sbjct: 22 FAKSVTFICEHNADGAMGIVINRPINMTLQDLFKQLNLPLAGALTDKPIYFGGPVQLDRG 81
Query: 195 LFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGW 254
L P D + + E++ GL +K+ + AE GP F G GW
Sbjct: 82 FVLHQPLQEWDSTLR--IDEEI--GLT-TSKDILQAIAE-----GHGPHHFLISLGYAGW 131
Query: 255 EKEQLNEEIRAGYWTVAACSP 275
QL +E+ W +P
Sbjct: 132 SSGQLEQELAHNAWLTVEATP 152
>sp|P43980|Y304_HAEIN UPF0301 protein HI_0304 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0304 PE=3 SV=1
Length = 186
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
+G LIA LD F RTV+ + G G+++N+P+ +SI E+ S + +
Sbjct: 5 QGKFLIAMPHLDDY--FNRTVVFMCEHNEQGSMGLVINQPTDLSIAELYSKLNFMMKNDR 62
Query: 179 TFSDRPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE-TVGCAAEMV 235
TF + + GGP+ E G L F+ Y TKE ++ +A++V
Sbjct: 63 TFGNEMVVAGGPMHTERGFIL--------HKNTLNAFQHT----YKVTKELSMTTSADVV 110
Query: 236 KR--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ + PE + GC W QL +EIR W V + + ++
Sbjct: 111 ETLGSTFAPEKYLVALGCSSWGAGQLEKEIRDNAWLVVSSNDQIL 155
>sp|Q1LSZ6|Y481_BAUCH UPF0301 protein BCI_0481 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=BCI_0481 PE=3 SV=1
Length = 187
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 137 IFERTVILLLSMEPMGPSGIILNRP----SLMSI--KEMRSTVLDAAGTFSDRPLFFGGP 190
+F+++V+ + + G GI++N+P ++ S+ K ++D A ++P+F GGP
Sbjct: 18 LFKQSVVYICTHNHEGAMGIVINKPVEQFTVASVLHKLKIIPIVDHASVQLNQPVFLGGP 77
Query: 191 L--EEGLFLVSPKGG-GDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRF 247
L + G + +PK G G +G S Q M ET+G + P+D
Sbjct: 78 LADDRGFIIHTPKDGFGASIGIS---PQTMITTSKDVLETLGTHNQ--------PDDILV 126
Query: 248 FDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
G GWE+ QL E+RA W + ++
Sbjct: 127 ALGYSGWEEGQLEHELRANTWLTIPANNQIL 157
>sp|Q4QNN9|Y415_HAEI8 UPF0301 protein NTHI0415 OS=Haemophilus influenzae (strain
86-028NP) GN=NTHI0415 PE=3 SV=1
Length = 186
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
+G LIA LD F RTV+ + G G+++N+P+ +SI E+ S + +
Sbjct: 5 QGKFLIAMPHLDDY--FNRTVVFMCEHNEQGSMGLVINQPTDLSIAELYSKLNFMMKNDR 62
Query: 179 TFSDRPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE-TVGCAAEMV 235
TF + + GGP+ E G L F+ Y TKE ++ +A++V
Sbjct: 63 TFGNEMVVAGGPVHTERGFIL--------HKNTLNAFQHT----YKVTKELSMTTSADVV 110
Query: 236 KR--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ + PE + GC W QL +EIR W V + + ++
Sbjct: 111 ETLGSTFAPEKYLVALGCSSWGAGQLEKEIRDNAWLVVSSNDQIL 155
>sp|Q8NL65|Y3084_CORGL UPF0301 protein Cgl3084/cg3414 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=Cgl3084 PE=3 SV=1
Length = 189
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 17/179 (9%)
Query: 118 HEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAA 177
+E G LL+A + FER+++L++ P G+ ++ S +++ + +D
Sbjct: 4 NEVAPGMLLVAAPDM-ASEDFERSIVLIIEHSPATTFGVNISSRSDVAVANVLPEWVDL- 61
Query: 178 GTFSDRPLFFGGPLEE----GLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
T + L+ GGPL + GL + P G ++ S F ++ L + A E
Sbjct: 62 -TSKPQALYIGGPLSQQAVVGLGVTKP---GVDIENSTSFNKLANRL---VHVDLRSAPE 114
Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELL 292
V + G RFF G W QLNEEI G W V PS I + G + +W +++
Sbjct: 115 DVADDLEG---MRFFAGYAEWAPGQLNEEIEQGDWFVTPALPSDI-IAPGRVDIWGDVM 169
>sp|Q07Z75|Y2850_SHEFN UPF0301 protein Sfri_2850 OS=Shewanella frigidimarina (strain NCIMB
400) GN=Sfri_2850 PE=3 SV=1
Length = 186
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 23/185 (12%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
K LIA LD FER+VI + + G G+++NRP + ++++ + L
Sbjct: 5 KDHFLIAMPSLDDT-FFERSVIYICEHDQKGAMGLMVNRPIGVEVEDLLEQMELYLSPEF 63
Query: 179 TFS-DRPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMV 235
FS D + GGP+ E G L +P+ V + + E M ++G
Sbjct: 64 VFSLDSQVLIGGPVAPERGFVLHTPQQHW--VNSTEISEDTMLTSSRDILASIGSDK--- 118
Query: 236 KRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLM 295
PE+F G GW K+QL +EI W +P ++ + E +WLM
Sbjct: 119 -----SPENFVVALGYSGWSKDQLEQEIADNTWLTIKATPELL------FNVEPEQMWLM 167
Query: 296 GRRKV 300
+++
Sbjct: 168 ATQQL 172
>sp|Q31EK4|Y1827_THICR UPF0301 protein Tcr_1827 OS=Thiomicrospira crunogena (strain XCL-2)
GN=Tcr_1827 PE=3 SV=1
Length = 188
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIKEMRS---TVLDAAGTFSDRPLFFGGP--LE 192
F++TVI ++ G G+++N +++ E+ ++A ++D+P+ GGP LE
Sbjct: 23 FDKTVIYIVEDNEHGTMGLVINLEHNLTVPELLDHFELTVEAPENYADQPVLMGGPVDLE 82
Query: 193 EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVG--PEDFRFFDG 250
G L P+G + L + + + +K A G PE G
Sbjct: 83 HGFILHEPQGTW------------QKSLPLRDNLAMTVSEDFLKAMADGTAPEKIVVCLG 130
Query: 251 CCGWEKEQLNEEIRAGYWTVAACSPSVI 278
GWEK QLN+EI+A W + +++
Sbjct: 131 FSGWEKGQLNDEIQANNWLTIPYNEALL 158
>sp|B2HI98|Y053_MYCMM UPF0301 protein MMAR_0053 OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=MMAR_0053 PE=3 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 23/202 (11%)
Query: 105 PQSSLGDKWAHTIHEPEKGCLLIA-TEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL 163
PQ D A G LL+A T+ L+ F R+VI ++ G G++LNRPS
Sbjct: 3 PQEDPEDHVAPAAQRVRAGTLLLANTDLLEPT--FRRSVIYIVEHNDGGTLGVVLNRPSE 60
Query: 164 MSIKEMRSTVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEG 219
++ VL + +P +F GGP+ + L L + + G D G SG+
Sbjct: 61 TAVH----NVLPQWAKLAAKPKTMFIGGPVKRDAALCLATLRVGADPGGVSGLRHVAGRI 116
Query: 220 LYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIG 279
+ A +V E R F G GW QL EI W V + PS +
Sbjct: 117 VMVDLDADPDLIAPLV-------EGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSDV- 168
Query: 280 LESGTLGLWEELLWLMGRRKVW 301
L LW L RR+ W
Sbjct: 169 LVPPRADLWGRTL----RRQPW 186
>sp|A0PKF8|Y052_MYCUA UPF0301 protein MUL_0052 OS=Mycobacterium ulcerans (strain Agy99)
GN=MUL_0052 PE=3 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 23/202 (11%)
Query: 105 PQSSLGDKWAHTIHEPEKGCLLIA-TEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL 163
PQ D A G LL+A T+ L+ F R+VI ++ G G++LNRPS
Sbjct: 3 PQEDPEDHVAPAAQRVRAGTLLLANTDLLEPT--FRRSVIYIVEHNDGGTLGVVLNRPSE 60
Query: 164 MSIKEMRSTVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEG 219
++ VL + +P +F GGP+ + L L + + G D G SG+
Sbjct: 61 TAVH----NVLPQWAKLAAKPKTMFIGGPVKRDAALCLATLRVGADPGGVSGLRHVAGRI 116
Query: 220 LYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIG 279
+ A +V E R F G GW QL EI W V + PS +
Sbjct: 117 VMVDLDADPDLIAPLV-------EGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSDV- 168
Query: 280 LESGTLGLWEELLWLMGRRKVW 301
L LW L RR+ W
Sbjct: 169 LVPPRADLWGRTL----RRQPW 186
>sp|Q8KEM4|Y663_CHLTE UPF0301 protein CT0663 OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=CT0663 PE=3 SV=1
Length = 187
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS- 181
G LL+A+ L + F+RTV+L+ G G ILN+P M V +A F
Sbjct: 11 GKLLLASANLLDPN-FKRTVLLMCEHNEEGSIGFILNKP-------MEFKVCEAISGFDE 62
Query: 182 -DRPLFFGGPLE-EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKRN 238
D PL GGP++ + + ++ +G +V V +V+ GL++G KE + + ++
Sbjct: 63 IDEPLHMGGPVQVDTVHVLHTRG---DVIDGAV--EVIPGLFWGGDKEQL---SYLINTG 114
Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACS 274
+ + RFF G GW QL E G W A S
Sbjct: 115 VIKASEVRFFLGYAGWSAGQLEAEFEEGSWYTADAS 150
>sp|A8F0D7|Y049_RICM5 UPF0301 protein RMA_0049 OS=Rickettsia massiliae (strain Mtu5)
GN=RMA_0049 PE=3 SV=1
Length = 189
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+GDK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MGDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDKITTPVMVPIYLGGPIEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELEKNLWLVMDCNKEFI 159
>sp|Q82D55|Y5129_STRAW UPF0301 protein SAV_5129 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=SAV_5129 PE=3 SV=1
Length = 193
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSD 182
G LL+AT L + F+R V+LLL + G G++LNRP+ + + ++ D AG
Sbjct: 12 GRLLVATPALADPN-FDRAVVLLLDHDEEGSLGVVLNRPTPVDVSDILEGWADLAGEPG- 69
Query: 183 RPLFFGGP--LEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAV 240
+F GGP L+ L + GG G + +V + E E++ + A+
Sbjct: 70 -VVFQGGPVSLDSALGVAVIPGGASVDGAPLGWRRVHGAIGLVDLE---APPELLAK-AL 124
Query: 241 GPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELL 292
G R F G GW QL +E+ G W V P + S LW E+L
Sbjct: 125 G--SLRIFAGYAGWGPGQLEDELVEGAWYVVESEPGDVSSPSPER-LWREVL 173
>sp|Q7VKS7|Y1794_HAEDU UPF0301 protein HD_1794 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=HD_1794 PE=1 SV=1
Length = 186
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 19/182 (10%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
+G +IAT ++D + F+RTVI + G G+I+N P+ +S+ E+ + + +
Sbjct: 6 QGKFIIATPEMDDEY-FDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRMDFQMAKPR 64
Query: 179 TFS-DRPLFFGGPLEEGL-FLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVK 236
++ D+ + GGP+ + F+V K + V + + T+ + +++
Sbjct: 65 IYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHSYKVTDDI----------TLTTSGDVLD 114
Query: 237 R--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWL 294
PE F GC W+ QL +EI YW ++ + + E+ L W E +
Sbjct: 115 SFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTL-FETSYLDRWVEANEM 173
Query: 295 MG 296
+G
Sbjct: 174 LG 175
>sp|Q92JM4|Y043_RICCN UPF0301 protein RC0043 OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=RC0043 PE=3 SV=1
Length = 189
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+GDK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MGDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELETNLWLVMDCNKEFI 159
>sp|Q605E8|Y2336_METCA UPF0301 protein MCA2336 2 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=MCA2336 PE=3 SV=1
Length = 188
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 125 LLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKE-MRSTVLD-AAGTFSD 182
LIA L H F +TV L+ G GII+NRPS + + + MR +D D
Sbjct: 12 FLIAMPGLTDPH-FAKTVTLVCQHNADGALGIIINRPSELKLSDIMRQMEIDLKVAELGD 70
Query: 183 RPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAV 240
P+FFGGP+ E G L P V S + V E L T + E V R
Sbjct: 71 LPVFFGGPVHPERGFILHEPA----TVWASTLV--VSERLALTTSRDI---LEAVGRGE- 120
Query: 241 GPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
GP G GW + QL EI W A +VI
Sbjct: 121 GPRRMLLALGYAGWGQGQLEREIIDNSWLNAPSDNAVI 158
>sp|A0Q8W4|Y052_MYCA1 UPF0301 protein MAV_0052 OS=Mycobacterium avium (strain 104)
GN=MAV_0052 PE=3 SV=1
Length = 201
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 104 PPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL 163
PP D A G LL+A L F R+VI ++ G G++LNRPS
Sbjct: 2 PPPEDPEDYVAPAAQRVRAGTLLLANTDLLE-PTFRRSVIYIVEHNDGGTLGVVLNRPSD 60
Query: 164 MSIKEMRSTVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEG 219
++ VL T + +P +F GGP+ + L L + + G D G G+
Sbjct: 61 TAVYN----VLPQWTTLAAKPKTMFIGGPVKRDAALCLATLRVGADPQGAPGLRH----- 111
Query: 220 LYFGTKETVGCAAEMVKRNAVGP--EDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPS- 276
G V A+ +A+ P E R F G GW QL EI W V + PS
Sbjct: 112 -VDGRVVMVDLDAD---PDAIAPLVEGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSD 167
Query: 277 -VIGLESGTLGLWEELL 292
++G S LW ++L
Sbjct: 168 VLVGPRS---DLWGQVL 181
>sp|Q744T3|Y045_MYCPA UPF0301 protein MAP_0045 OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=MAP_0045 PE=3 SV=1
Length = 201
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 25/197 (12%)
Query: 104 PPQSSLGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSL 163
PP D A G LL+A L F R+VI ++ G G++LNRPS
Sbjct: 2 PPPEDPEDYVAPAAQRVRAGTLLLANTDLLE-PTFRRSVIYIVEHNDGGTLGVVLNRPSD 60
Query: 164 MSIKEMRSTVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEG 219
++ VL T + +P +F GGP+ + L L + + G D G G+
Sbjct: 61 TAVYN----VLPQWTTLAAKPKTMFIGGPVKRDAALCLATLRVGADPQGAPGLRH----- 111
Query: 220 LYFGTKETVGCAAEMVKRNAVGP--EDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPS- 276
G V A+ +A+ P E R F G GW QL EI W V + PS
Sbjct: 112 -VDGRVVMVDLDAD---PDAIAPLVEGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSD 167
Query: 277 -VIGLESGTLGLWEELL 292
++G S LW ++L
Sbjct: 168 VLVGPRS---DLWGQVL 181
>sp|C3PM61|Y041_RICAE UPF0301 protein RAF_ORF0041 OS=Rickettsia africae (strain ESF-5)
GN=RAF_ORF0041 PE=3 SV=1
Length = 189
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+GDK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MGDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTKEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDKITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P+ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKHSLFIVGYTAWKPGQLEEELETNLWLVMDCNKEFI 159
>sp|Q3JE52|Y368_NITOC UPF0301 protein Noc_0368 OS=Nitrosococcus oceani (strain ATCC 19707
/ NCIMB 11848) GN=Noc_0368 PE=3 SV=1
Length = 187
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 29/165 (17%)
Query: 125 LLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRS--TVLDAAGTFSD 182
LIA LD V+ F RTV + G GII+NRP +++ +M V D +
Sbjct: 11 FLIAMPALDDVN-FARTVTFICEHNQDGAMGIIINRPLSITLDQMLQHIKVKDCPQEVGE 69
Query: 183 RPLFFGGPL--EEGLFLVSPKGG-------GDEVGKSGVFEQVMEGLYFGTKETVGCAAE 233
P+F GGP+ E G L P G GDEVG + +++ + G
Sbjct: 70 MPVFLGGPIQQERGFVLHRPIGQWETTLRVGDEVGIT-TSRDILDAITQGK--------- 119
Query: 234 MVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
GP G GW QL +E+ W + +V+
Sbjct: 120 -------GPPQTLIALGYAGWGPNQLEQELAENAWLSTPANSTVV 157
>sp|Q4UNH2|Y044_RICFE UPF0301 protein RF_0044 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=RF_0044 PE=3 SV=1
Length = 189
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+GDK H + G L+AT I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MGDKIFHNL----SGKTLVATPHAITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFQND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELEKNLWLVMDCNKEFI 159
>sp|Q1R1I6|Y058_CHRSD UPF0301 protein Csal_0058 OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=Csal_0058 PE=3
SV=1
Length = 185
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 14/161 (8%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAAGT- 179
K L+A LD + F+ T+ L + G G+I+NRP +++ + + LDAA
Sbjct: 5 KHHFLLAMPHLDDPN-FKGTLTYLCDHDENGTMGVIVNRPMELTLDALLEQLELDAAECP 63
Query: 180 FSDRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR-- 237
+ P+ +GGP+ + + +G S QV + + T + +M+K
Sbjct: 64 CREMPVHYGGPVHKDRGFILHRGSSLPWDSS---LQVADDIALTT------SMDMLKAIA 114
Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
N GPEDF GC W+ QL +E++ W S++
Sbjct: 115 NGQGPEDFIVCLGCAAWQAGQLEDELKQNTWLTVEGDASIL 155
>sp|Q9L1U6|Y2948_STRCO UPF0301 protein SCO2948 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=SCO2948 PE=3 SV=1
Length = 193
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFSD 182
G LL+AT L + FER V+LLL + G G++LNRP+ + + ++ D AG
Sbjct: 12 GRLLVATPALADPN-FERAVVLLLDHDEEGSLGVVLNRPTPVDVGDILEDWADLAGEPGV 70
Query: 183 RPLFFGGP--LEEGLFL-VSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNA 239
+F GGP L+ L + V P G E G + +V + E A + A
Sbjct: 71 --VFQGGPVSLDSALGVAVVPGGASGERAPLG-WRRVHGAIGLVDLE----APPELLAPA 123
Query: 240 VGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSP 275
VG R F G GW QL +E+ G W V P
Sbjct: 124 VGA--LRIFAGYAGWGPGQLEDELTEGAWYVVESEP 157
>sp|C1B7P4|Y3450_RHOOB UPF0301 protein ROP_34500 OS=Rhodococcus opacus (strain B4)
GN=ROP_34500 PE=3 SV=1
Length = 201
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 111 DKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMR 170
D+ A T G LL+++ L F RTVI ++ G G+++NRPS ++ +
Sbjct: 9 DRTASTEPVVRPGSLLVSSTDLVE-PAFRRTVIYVIEHNEAGSLGVVINRPSETAVHD-- 65
Query: 171 STVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE 226
VL + RP L+ GGP+ + L L + + G G G+ +
Sbjct: 66 --VLPQWAPLTARPSALYVGGPVKRDAALCLATLRTGAQADGVRGLRRVHGRVVMVDLDS 123
Query: 227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLG 286
A +V E R F G GW QL+ E++ W V + S + L +
Sbjct: 124 DPEVVAPLV-------EGVRIFAGYSGWTYGQLDSELQRDDWIVISALASDV-LAPARVD 175
Query: 287 LWEELL 292
+W ++L
Sbjct: 176 VWAQVL 181
>sp|A1TI09|Y6057_MYCVP UPF0301 protein Mvan_6057 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=Mvan_6057 PE=3 SV=1
Length = 201
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 111 DKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMR 170
D A + G +L+A L F R+VI ++ G G++LNRPS ++
Sbjct: 9 DFVAPAAYRVRAGTMLLANTDLLE-PTFRRSVIYVVEHNDGGTLGVVLNRPSETAVY--- 64
Query: 171 STVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE 226
VL + +P +F GGP+ + L L + + G D G G+ +
Sbjct: 65 -NVLPQWAKLATKPKTMFIGGPVKRDAALCLATLRVGIDPAGVDGLRHVQGRVVMVDLDA 123
Query: 227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLG 286
A MV E R F G GW QL EI W V + PS + +E +
Sbjct: 124 DPDSIAPMV-------EGVRIFAGYSGWTIGQLEGEIERDDWIVLSALPSDVLVEP-RVD 175
Query: 287 LWEELL 292
LW +L
Sbjct: 176 LWARIL 181
>sp|C4K0Q1|Y1165_RICPU UPF0301 protein RPR_01165 OS=Rickettsia peacockii (strain Rustic)
GN=RPR_01165 PE=3 SV=1
Length = 189
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+ DK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MSDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIIGYTAWKPGQLEEELETNLWLVMDCNKEFI 159
>sp|A8GQH5|Y270_RICRS UPF0301 protein A1G_00270 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=A1G_00270 PE=3 SV=1
Length = 189
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+ DK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MSDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELETNLWLVMDCNKEFI 159
>sp|B0BVW3|Y061_RICRO UPF0301 protein RrIowa_0061 OS=Rickettsia rickettsii (strain Iowa)
GN=RrIowa_0061 PE=3 SV=1
Length = 189
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+ DK H + G L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MSDKIFHNL----SGKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFHND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELETNLWLVMDCNKEFI 159
>sp|Q5LX84|Y296_RUEPO UPF0301 protein SPO0296 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=SPO0296 PE=3 SV=2
Length = 184
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 123 GCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM--RSTVLDAAGTF 180
G LLIA + G FER+VI L S G G+I+N+P+ +++ + + + ++
Sbjct: 5 GKLLIAMPGM-GDPRFERSVIFLCSHGEDGAMGLIVNKPADLNVSTLLEQLEIPSSSAAA 63
Query: 181 SDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRN 238
+ P+ GGP+E G L SP D GK +V +G F T+ ++ + N
Sbjct: 64 ARAPVRLGGPVEMARGFVLHSP----DYAGKLQSL-KVSDG--FVMTATLDILEDIARDN 116
Query: 239 AVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWEELLWLMG 296
GP G GW QL EI W A P ++ S G WE L L+G
Sbjct: 117 --GPARAALMLGYSGWGPGQLEAEIGDNGWLTADADPDIV-FGSRDDGKWEAALKLLG 171
>sp|A5UAI5|Y1530_HAEIE UPF0301 protein CGSHiEE_01530 OS=Haemophilus influenzae (strain
PittEE) GN=CGSHiEE_01530 PE=3 SV=1
Length = 186
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 22/165 (13%)
Query: 122 KGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAG 178
+G LIA LD F RTV+ + G G+++N+P+ +SI E+ S + +
Sbjct: 5 QGKFLIAMPHLDDY--FNRTVVFMCEHNEQGSMGLVINQPTDLSIAELYSKLNFMMKNDR 62
Query: 179 TFSDRPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE-TVGCAAEMV 235
TF + + GGP+ E G L F+ Y T+E ++ +A++V
Sbjct: 63 TFGNEMVVAGGPVHTERGFIL--------HKNTLNAFQHT----YKVTEELSMTTSADVV 110
Query: 236 KR--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
+ + PE + GC W QL +EI W V + ++
Sbjct: 111 ETLGSTFAPEKYLVALGCSSWGAGQLEKEISDNAWLVVSSKDQIL 155
>sp|B0U0F0|Y1759_FRAP2 UPF0301 protein Fphi_1754 OS=Francisella philomiragia subsp.
philomiragia (strain ATCC 25017) GN=Fphi_1754 PE=3 SV=1
Length = 193
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 119 EPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV-LDAA 177
+ K +L+AT + IF ++VI L + G G+I+N+P +++++ + +
Sbjct: 3 QNHKSEILLATPLIKDDAIFTKSVIYLCQNDRHGAMGLIINKPLSDTLRDVFEELEISHH 62
Query: 178 GTFS---DRPLFFGGPLEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEM 234
TF+ D PL+ GGP+ ++ G + + EGL + + ++
Sbjct: 63 NTFNEILDYPLYMGGPISPHKIMILHTTNGRNYSSTIKLD---EGL------AITASMDI 113
Query: 235 VKR--NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVA 271
++ N + PE F G W +QL +EI++ W V
Sbjct: 114 LEDLANNILPEYFLPVVGYSCWTADQLTDEIKSNDWIVT 152
>sp|Q0SAK3|Y3630_RHOSR UPF0301 protein RHA1_ro03630 OS=Rhodococcus sp. (strain RHA1)
GN=RHA1_ro03630 PE=3 SV=1
Length = 201
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 111 DKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMR 170
D+ A T G LL+++ L F RTVI ++ G G+++NRPS ++ +
Sbjct: 9 DRTASTEPVVRPGSLLVSSTDLVE-PAFRRTVIYVIEHNDAGSLGVVINRPSETAVHD-- 65
Query: 171 STVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKE 226
VL + RP L+ GGP+ + L L + + G G +G+ +
Sbjct: 66 --VLPQWAPLAARPSALYVGGPVKRDAALCLATLRTGAQADGVAGLRRVHGRVVMVDLDS 123
Query: 227 TVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLG 286
A +V E R F G GW QL+ E++ W V + S + + +
Sbjct: 124 DPEVIAPLV-------EGVRIFAGYSGWTYGQLDSELQRDDWIVISALASDV-VAPARVD 175
Query: 287 LWEELL 292
+W ++L
Sbjct: 176 VWAQVL 181
>sp|Q47MA0|Y2389_THEFY UPF0301 protein Tfu_2389 OS=Thermobifida fusca (strain YX)
GN=Tfu_2389 PE=3 SV=1
Length = 198
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 114 AHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV 173
AH G LL+AT L+ + + V ++ G G+ILNRPS + + E V
Sbjct: 3 AHMDRLSLTGALLVATPLLEDPNFYRSVVFVIDDTPDEGTLGVILNRPSELGVGE----V 58
Query: 174 LDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVG 229
L G +P +F GGP+ + GL L P G +G + + G
Sbjct: 59 LAEWGEHVSQPAVMFAGGPVGQDAGLALAVPDDGQRPLGWKSLDAMDAKTWPNGLGTVDL 118
Query: 230 CAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLESGTLGLWE 289
+ +A+ R F G GW QL EI G W V + + + GLW
Sbjct: 119 DTPPQLVADAL--RQMRVFAGYAGWSAGQLRAEIDQGAWYVLPATVDDV-FCADPRGLWS 175
Query: 290 ELL 292
+L
Sbjct: 176 RVL 178
>sp|A0R7H8|Y6921_MYCS2 UPF0301 protein MSMEG_6921/MSMEI_6732 OS=Mycobacterium smegmatis
(strain ATCC 700084 / mc(2)155) GN=MSMEG_6921 PE=3 SV=1
Length = 201
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 111 DKWAHTIHEPEKGCLLIA-TEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM 169
D A H G LL+A T+ L+ F RTVI ++ G G+ILNRPS ++
Sbjct: 9 DFIAPAAHRVRPGTLLLANTDLLEPT--FRRTVIYIVEHNSGGTLGVILNRPSETAVY-- 64
Query: 170 RSTVLDAAGTFSDRP--LFFGGPL--EEGLFLVSPKGGGDEVGKSGVF----EQVMEGLY 221
VL + +P +F GGP+ + L L + + G G G+ VM L
Sbjct: 65 --NVLPQWAEVTAKPKTMFIGGPVKRDSALCLATLRVGMQADGVDGLRHVQGRVVMVDLD 122
Query: 222 FGTKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIGLE 281
+E E R F G GW QL+ EI W V + PS + +E
Sbjct: 123 ADPEELAPVI-----------EGVRIFAGYSGWTTGQLDGEIERDDWIVLSALPSDVLIE 171
Query: 282 SGTLGLWEELL 292
+ LW +L
Sbjct: 172 P-RIDLWGRVL 181
>sp|B2T0I4|Y868_BURPP UPF0301 protein Bphyt_0868 OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=Bphyt_0868 PE=3 SV=1
Length = 192
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAGTFSDRPLFFGGPL--E 192
F TV+ L G G+++NRP+ + ++ + S + L+ P++FGGP+ E
Sbjct: 26 FSGTVVYLCDHSERGALGLVINRPTDIDLQALFSRIDLKLEIEPLLH-VPVYFGGPVQTE 84
Query: 193 EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCC 252
G L PK G V GL T + V A + GPE F G
Sbjct: 85 RGFVLHDPKDGNAYTSSM----SVPGGLEMTTSKDVLEAVA----SGTGPERFLLTLGHA 136
Query: 253 GWEKEQLNEEIRAGYWTVAACSPSVI 278
GW QL EEI W P ++
Sbjct: 137 GWGAGQLEEEISKNGWLTVEADPKIV 162
>sp|Q144Q2|Y0649_BURXL UPF0301 protein Bxeno_A0649 OS=Burkholderia xenovorans (strain
LB400) GN=Bxeno_A0649 PE=3 SV=2
Length = 192
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 138 FERTVILLLSMEPMGPSGIILNRPSLMSIKEMRSTV---LDAAGTFSDRPLFFGGPL--E 192
F TV+ L G G+++NRP+ + ++ + S + L+ P++FGGP+ E
Sbjct: 26 FSGTVVYLCDHSERGALGLVINRPTDIDLQALFSRIDLKLEIEPLLH-VPVYFGGPVQTE 84
Query: 193 EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKRNAVGPEDFRFFDGCC 252
G L PK G V GL T + V A + GPE F G
Sbjct: 85 RGFVLHDPKDGNAYTSSM----SVPGGLEMTTSKDVLEAVA----SGTGPERFLLTLGHA 136
Query: 253 GWEKEQLNEEIRAGYWTVAACSPSVI 278
GW QL EEI W P ++
Sbjct: 137 GWGAGQLEEEISKNGWLTVEADPKIV 162
>sp|B0UWW1|Y1900_HAES2 UPF0301 protein HSM_1900 OS=Haemophilus somnus (strain 2336)
GN=HSM_1900 PE=3 SV=1
Length = 187
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 125 LLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNRPSLMSIKEM---RSTVLDAAGTFS 181
LIA L+ + F+R+V+ + G G++L + + +SI E+ + ++ +S
Sbjct: 7 FLIAMPHLEDEN-FQRSVVYICENNEQGSMGLVLTQATDLSIAELCAKMNFMMADEREYS 65
Query: 182 DRPLFFGGP--LEEGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTKETVGCAAEMVKR-- 237
D+ + GGP LE G L K E S +V + +Y T +A+++
Sbjct: 66 DKLVLLGGPVNLEHGFIL--HKKTAQEFQHSY---KVTDQIYLTT------SADIINTFG 114
Query: 238 NAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
A PE + GC WE QL EI W V +++
Sbjct: 115 TAQSPEKYLVTLGCARWEPNQLENEIANNDWLVVPADENIL 155
>sp|Q9ZEB3|Y032_RICPR UPF0301 protein RP032 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP032 PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 33/183 (18%)
Query: 111 DKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-------PSL 163
DK H + G L+AT + I+ +++I +LS G G+I NR S
Sbjct: 3 DKIFHNL----SGKTLVATPYVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHVDLKSF 58
Query: 164 MSIKEMRSTVLDAAGTFSDRPLFFGGPL--EEGLFLVSPKGGGDEVGKSGVFEQVMEGLY 221
IKE D + P++ GGP+ E+G FL S + + L
Sbjct: 59 FKIKE------DKITSQVMVPIYLGGPIEHEKGFFLHSRDYNKNLL------------LD 100
Query: 222 FGTKETVGCAAEMVKRNAV--GPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVIG 279
F V E+ + A GP++ F G W+ QL EE+ W V CS I
Sbjct: 101 FHNDLAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELEKNLWLVMDCSKEFIF 160
Query: 280 LES 282
E+
Sbjct: 161 AEN 163
>sp|A8GLU3|Y165_RICAH UPF0301 protein A1C_00165 OS=Rickettsia akari (strain Hartford)
GN=A1C_00165 PE=3 SV=1
Length = 189
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 21/175 (12%)
Query: 109 LGDKWAHTIHEPEKGCLLIATEKLDGVHIFERTVILLLSMEPMGPSGIILNR-PSLMSIK 167
+GDK H + L+AT + I+ +++I +LS G G+I NR + + +K
Sbjct: 1 MGDKIFHNL----SSKTLVATPHVITKGIYHKSLIYMLSHTEEGAIGLIFNRLVNHIDLK 56
Query: 168 EMRSTVLDAAGTFSDRPLFFGGPLE--EGLFLVSPKGGGDEVGKSGVFEQVMEGLYFGTK 225
D T P++ GGP+E +G FL S + + L F
Sbjct: 57 SFFKIKNDDITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLL------------LDFQND 104
Query: 226 ETVGCAAEMVKRNAVG--PEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 278
V E+ + A G P++ F G W+ QL EE+ W V C+ I
Sbjct: 105 LAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELERNLWLVMDCNKEFI 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,579,155
Number of Sequences: 539616
Number of extensions: 5184833
Number of successful extensions: 9467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 9100
Number of HSP's gapped (non-prelim): 306
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)