Query 022179
Match_columns 301
No_of_seqs 92 out of 94
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13266 DUF4057: Protein of u 100.0 1E-132 2E-137 927.5 19.8 297 2-299 2-302 (302)
2 PF13266 DUF4057: Protein of u 100.0 1.5E-32 3.3E-37 257.0 9.3 161 30-220 102-302 (302)
3 PF14493 HTH_40: Helix-turn-he 24.4 38 0.00081 26.6 1.0 15 128-142 13-27 (91)
4 PF10313 DUF2415: Uncharacteri 12.8 63 0.0014 23.3 -0.2 10 13-22 15-24 (43)
5 PF07908 D-aminoacyl_C: D-amin 11.2 1.3E+02 0.0029 21.5 1.1 23 32-54 9-31 (48)
6 KOG0374 Serine/threonine speci 9.8 1.6E+02 0.0034 29.2 1.4 63 12-85 205-276 (331)
7 PF03544 TonB_C: Gram-negative 9.3 55 0.0012 23.8 -1.5 42 130-171 4-45 (79)
8 TIGR01352 tonB_Cterm TonB fami 9.3 55 0.0012 23.5 -1.5 38 134-171 2-39 (74)
9 PF07623 PEGSRP: Protein of un 8.7 1.5E+02 0.0032 19.7 0.5 8 288-295 4-11 (27)
10 PF15276 PP1_bind: Protein pho 6.4 2.7E+02 0.0058 21.9 1.1 14 44-57 4-17 (64)
No 1
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=1e-132 Score=927.51 Aligned_cols=297 Identities=78% Similarity=1.148 Sum_probs=290.2
Q ss_pred CCCCCCCCCCccccccCCCCCCCCCC---CCCCCCCCCCCCCCCceeeeeCCcCCHHHHHhhhhcCCCCccccccccCCC
Q 022179 2 ATPVRKSHVSTSDLLTWPEAPSSDSS---HPPASAPRSHQPSDGVSKVLFGGQITDEEAQSLNKKKPCSGYKLKEINGSG 78 (301)
Q Consensus 2 ~~pvr~~h~st~dll~w~~~~~~~~~---~~~~~~~R~~Qps~gis~v~Fg~q~T~eeae~l~krk~cS~~K~KEmtGSg 78 (301)
++|||+|||||||||+|+|+|+++.+ +++++++|+|||++|||+|+||+|||+||||+|+||||||+||||||||||
T Consensus 2 ~~pvR~~HtsTadLltWse~~~~~~~~~~~~~~~a~RshQPs~giskv~fGgQvT~EEAEsL~KRKpCS~~K~KEmTGSG 81 (302)
T PF13266_consen 2 ATPVRKPHTSTADLLTWSETPPPDSPAASSTSRPARRSHQPSDGISKVVFGGQVTEEEAESLNKRKPCSGYKMKEMTGSG 81 (302)
T ss_pred CCCccCCCcCchhhccccCCCCcccccccCCCCCCCCCCCCcccccccccCCcCCHHHHHHHhccCcCccccceeccccc
Confidence 68999999999999999999987665 367899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCC-CCCcceeeecccccccceeeecCCcccCCCCCCChHHHhhhhhccCccccchhhhhccccc
Q 022179 79 IFVANGENGASESDAGNR-NNRTSVRVYQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTKKQIS 157 (301)
Q Consensus 79 IF~~~~e~~~~~~~~~~~-~~~tsvr~~qqa~~g~SqIsFg~e~~vsPkKpts~~evAkQrelsgt~e~e~d~k~kKq~S 157 (301)
||++++++++++.+.+|+ ++||+||||||+++|||||||++||+|+|||||||+|||||||||||||+|+|++++||+|
T Consensus 82 IF~~~~e~~~se~~san~~~~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S 161 (302)
T PF13266_consen 82 IFSANGEDDASESGSANPTPNRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQIS 161 (302)
T ss_pred ccccCCCCcccccccCCCCccccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhh
Confidence 999999999999999987 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCCCCCCCCchhHHhhhhccccccCCCCCCCCCccccccccCCCCCCCccccCCCCcccccccchhhh
Q 022179 158 DAKFKEISGHDIFSPAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNILFGEEPVVKTSKKIHNQK 237 (301)
Q Consensus 158 ~aK~KELSGsdIFapppe~~prs~a~ar~~~~~~~~~~g~p~prn~~t~vr~~~p~gG~S~IsF~ee~~vkt~Kkis~~K 237 (301)
+||+|||||||||+||++++|+++ .+|.||.+|+++++++.||++++++++.+++||+|+|.|++|++||++||||++|
T Consensus 162 ~AK~KELSGhdIFapp~~~~pr~~-~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Ktakki~~~K 240 (302)
T PF13266_consen 162 NAKSKELSGHDIFAPPPEIKPRSL-TARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKTAKKISNQK 240 (302)
T ss_pred hhhhhhcccCcccCCCccCCCCcc-hhhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhhhhhhhhhh
Confidence 999999999999999999999998 5899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcccCCCCCCCCCCCCCchhhhhhccCCCCCCCCcccccccCCCcccCCCCCCCcc
Q 022179 238 FAELTGNDIFKGDVPPGSAEKPLSNAKLREMSGSNIFADEKVESRDYFGGVRKPPGGESSIS 299 (301)
Q Consensus 238 ~aELsGn~IFk~D~~p~~~eK~lS~AKlkEmSG~dIFAdgk~~~rd~~gg~rkpPGgeSsIa 299 (301)
|+||+|||||++|.++.++||+||.||||||+|+|||||+|+++|||+|||||||||+||||
T Consensus 241 ~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkPPGG~SSIa 302 (302)
T PF13266_consen 241 FAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAESRDYLGGVRKPPGGESSIA 302 (302)
T ss_pred hhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcccchhcCCccCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 2
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=99.97 E-value=1.5e-32 Score=256.96 Aligned_cols=161 Identities=34% Similarity=0.477 Sum_probs=143.2
Q ss_pred CCCCCCCCCC-CCCceeeeeCCcC---------------------CHHHHHhhhhcCCCCccccccccCCCcccCCCCCC
Q 022179 30 PASAPRSHQP-SDGVSKVLFGGQI---------------------TDEEAQSLNKKKPCSGYKLKEINGSGIFVANGENG 87 (301)
Q Consensus 30 ~~~~~R~~Qp-s~gis~v~Fg~q~---------------------T~eeae~l~krk~cS~~K~KEmtGSgIF~~~~e~~ 87 (301)
-++++||||+ .+|||+|+||++. |.|...+++.+|++|++|.|||+||+||+++.+..
T Consensus 102 ~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S~AK~KELSGhdIFapp~~~~ 181 (302)
T PF13266_consen 102 NRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQISNAKSKELSGHDIFAPPPEIK 181 (302)
T ss_pred cccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhhhhhhhhcccCcccCCCccCC
Confidence 4799999976 5799999999887 66755578888999999999999999999999988
Q ss_pred CCC--------------CCCCCCCCCcceeeecccccccceeeecCCcccCCCCCCChHHHhhhhhccCccccchhhhhc
Q 022179 88 ASE--------------SDAGNRNNRTSVRVYQQAMNGISQISFSAEETVSPKKPTSVPEVAKQRELSGSLQSESDLKTK 153 (301)
Q Consensus 88 ~~~--------------~~~~~~~~~tsvr~~qqa~~g~SqIsFg~e~~vsPkKpts~~evAkQrelsgt~e~e~d~k~k 153 (301)
++. ..+++++.+|+++++.++ +|.|+|.|++ +.++|+.
T Consensus 182 pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a-~~~s~~~~~~---------------------------~~~~Kta 233 (302)
T PF13266_consen 182 PRSLTARSLELKENKDRGEPAPRNVRTSVKVSNPA-GGQSNIEFGE---------------------------DSVVKTA 233 (302)
T ss_pred CCcchhhhhhhcccccccCCCCCcccccccccCCc-Cccccccccc---------------------------Ccchhhh
Confidence 876 224556789999999976 9999999999 5678889
Q ss_pred cccchhhhhhhccCCCCC----CCCCCCCchhHHhhhhccccccCCCCCCCCCccccccccCCCCCCCccc
Q 022179 154 KQISDAKFKEISGHDIFS----PAPEIQPRSLAAARSLESKESKDMGEPAPRNVRTSVKVSNPAGGQSNIL 220 (301)
Q Consensus 154 Kq~S~aK~KELSGsdIFa----pppe~~prs~a~ar~~~~~~~~~~g~p~prn~~t~vr~~~p~gG~S~Is 220 (301)
|.++++|+.||+|||||. +...+++.+.|++|+|.+.+||+||+|..|++++++| +|+||.|+|.
T Consensus 234 kki~~~K~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~r--kPPGG~SSIa 302 (302)
T PF13266_consen 234 KKISNQKFAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAESRDYLGGVR--KPPGGESSIA 302 (302)
T ss_pred hhhhhhhhhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcccchhcCCcc--CCCCCCCcCC
Confidence 999999999999999998 3447788999999999999999999999999999998 9999999984
No 3
>PF14493 HTH_40: Helix-turn-helix domain
Probab=24.38 E-value=38 Score=26.55 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCChHHHhhhhhccC
Q 022179 128 PTSVPEVAKQRELSG 142 (301)
Q Consensus 128 pts~~evAkQrelsg 142 (301)
-.|+.|||++|.|+-
T Consensus 13 G~si~eIA~~R~L~~ 27 (91)
T PF14493_consen 13 GLSIEEIAKIRGLKE 27 (91)
T ss_pred CCCHHHHHHHcCCCH
Confidence 468999999999974
No 4
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=12.83 E-value=63 Score=23.28 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=8.1
Q ss_pred cccccCCCCC
Q 022179 13 SDLLTWPEAP 22 (301)
Q Consensus 13 ~dll~w~~~~ 22 (301)
-|||.|+|..
T Consensus 15 ~DLL~~~E~~ 24 (43)
T PF10313_consen 15 NDLLAWAEHQ 24 (43)
T ss_pred ccEEEEEccC
Confidence 3999999853
No 5
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=11.19 E-value=1.3e+02 Score=21.46 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCceeeeeCCcCCH
Q 022179 32 SAPRSHQPSDGVSKVLFGGQITD 54 (301)
Q Consensus 32 ~~~R~~Qps~gis~v~Fg~q~T~ 54 (301)
.-.+++|++.||..|+-.|++.-
T Consensus 9 t~~~p~~~~~GI~~V~VNG~~vv 31 (48)
T PF07908_consen 9 TYEDPNQPAEGIDYVFVNGQIVV 31 (48)
T ss_dssp -SSSTT---BSEEEEEETTEEEE
T ss_pred ccccccccCCCEEEEEECCEEEE
Confidence 34488999999999998888753
No 6
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=9.84 E-value=1.6e+02 Score=29.15 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=34.9
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCC-CceeeeeCCcCCHHHHHhhhhcCCCCcccccc-----ccCC---CcccC
Q 022179 12 TSDLLTWPEAPSSDSSHPPASAPRSHQPSD-GVSKVLFGGQITDEEAQSLNKKKPCSGYKLKE-----INGS---GIFVA 82 (301)
Q Consensus 12 t~dll~w~~~~~~~~~~~~~~~~R~~Qps~-gis~v~Fg~q~T~eeae~l~krk~cS~~K~KE-----mtGS---gIF~~ 82 (301)
-.||| |++.-.. ...+.+.+ |+| ++||.++.++=-+.++...-|.++.+-| +.+- =||++
T Consensus 205 l~DLl-Wsdp~~~---------~~g~~~n~Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSA 273 (331)
T KOG0374|consen 205 LCDLL-WSDPDDD---------VPGWEENDRGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSA 273 (331)
T ss_pred eeeee-ecCCCCC---------CCCcccCCCcee-eEecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecC
Confidence 35787 9952111 33344444 899 9999988766555554444444444332 2222 28877
Q ss_pred CCC
Q 022179 83 NGE 85 (301)
Q Consensus 83 ~~e 85 (301)
+..
T Consensus 274 P~Y 276 (331)
T KOG0374|consen 274 PNY 276 (331)
T ss_pred chh
Confidence 654
No 7
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=9.28 E-value=55 Score=23.83 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=33.4
Q ss_pred ChHHHhhhhhccCccccchhhhhccccchhhhhhhccCCCCC
Q 022179 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (301)
Q Consensus 130 s~~evAkQrelsgt~e~e~d~k~kKq~S~aK~KELSGsdIFa 171 (301)
..|+.|+++.+.|++.-+-.....-.+++.++.+=+|+.+|.
T Consensus 4 ~YP~~a~~~~~~G~v~v~~~I~~~G~v~~~~v~~s~~~~~l~ 45 (79)
T PF03544_consen 4 VYPEEARRRGIEGTVVVEFTIDPDGRVSDVRVIQSSGPPILD 45 (79)
T ss_dssp ---CHHHHHTEEEEEEEEEEEETTTEEEEEEEEEESSSSCSH
T ss_pred CCCHHHHHCCCeEEEEEEEEEeCCCCEEEEEEEEccCHHHHH
Confidence 357789999999999877777778889999998888887775
No 8
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=9.25 E-value=55 Score=23.51 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=29.9
Q ss_pred HhhhhhccCccccchhhhhccccchhhhhhhccCCCCC
Q 022179 134 VAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (301)
Q Consensus 134 vAkQrelsgt~e~e~d~k~kKq~S~aK~KELSGsdIFa 171 (301)
.|+++.+.|++.=+-.+.....+.+.++.+-+|+.+|.
T Consensus 2 ~a~~~~~~G~v~v~~~i~~~G~v~~~~i~~ssg~~~ld 39 (74)
T TIGR01352 2 RARRRGIEGTVVVRFTVDADGRVTSVSVLKSSGDEALD 39 (74)
T ss_pred hHHHcCCceEEEEEEEECCCCCEEEEEEEEcCCChhHH
Confidence 47788889988766666777888899888888887765
No 9
>PF07623 PEGSRP: Protein of unknown function (DUF1584); InterPro: IPR011477 This sequence motif is highly conserved in several short hypothetical proteins from Rhodopirellula baltica. It is also associated with IPR011476 from INTERPRO in Q7UJJ9 from SWISSPROT.
Probab=8.72 E-value=1.5e+02 Score=19.72 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=5.7
Q ss_pred cccCCCCC
Q 022179 288 VRKPPGGE 295 (301)
Q Consensus 288 ~rkpPGge 295 (301)
-|||||-+
T Consensus 4 ~RkppG~~ 11 (27)
T PF07623_consen 4 WRKPPGEE 11 (27)
T ss_pred cccCCCCC
Confidence 48899853
No 10
>PF15276 PP1_bind: Protein phosphatase 1 binding
Probab=6.41 E-value=2.7e+02 Score=21.87 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=11.0
Q ss_pred eeeeeCCcCCHHHH
Q 022179 44 SKVLFGGQITDEEA 57 (301)
Q Consensus 44 s~v~Fg~q~T~eea 57 (301)
..|+||++++.|-.
T Consensus 4 kRVsFG~~LSPElF 17 (64)
T PF15276_consen 4 KRVSFGEHLSPELF 17 (64)
T ss_pred ceeccCCCCCHHHh
Confidence 36999999998743
Done!