Query 022179
Match_columns 301
No_of_seqs 92 out of 94
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 15:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d8l_A ORF12; lactococcal phag 19.4 23 0.0008 27.4 0.0 23 257-279 2-25 (91)
2 1u07_A TONB protein; beta-hair 11.6 35 0.0012 25.2 -0.9 42 130-171 13-54 (90)
3 2ofg_X Zinc-transporting ATPas 11.1 85 0.0029 23.5 1.2 11 75-85 100-110 (111)
4 1nha_A TFIIF-alpha, transcript 9.5 1.3E+02 0.0044 23.5 1.7 30 38-67 4-34 (82)
5 3iuo_A ATP-dependent DNA helic 8.2 1.3E+02 0.0043 23.9 1.2 15 128-142 32-46 (122)
6 2k9k_A TONB2; metal transport; 7.3 67 0.0023 24.2 -0.8 42 130-171 28-69 (106)
7 2ip6_A PAPB, PEDB; immunity pr 6.4 1.7E+02 0.0057 24.1 1.1 30 45-82 67-99 (112)
8 1xf5_L Protein L, monoclonal a 6.3 68 0.0023 24.5 -1.2 17 270-286 23-39 (80)
9 1ica_A Insect defensin A; anti 6.1 1.5E+02 0.0051 20.2 0.5 8 12-19 2-9 (40)
10 2ln4_A Coprisin; antimicrobial 5.9 1.7E+02 0.0057 20.4 0.7 9 12-20 2-10 (44)
No 1
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=19.44 E-value=23 Score=27.44 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=18.7
Q ss_pred CCCCchh-hhhhccCCCCCCCCcc
Q 022179 257 EKPLSNA-KLREMSGSNIFADEKV 279 (301)
Q Consensus 257 eK~lS~A-KlkEmSG~dIFAdgk~ 279 (301)
+|+||.| |++-++|.|+|-..|+
T Consensus 2 akqlstarkfkmitgkdlfqqqka 25 (91)
T 3d8l_A 2 AKQLSTARKFKMITGKDLFQQQKA 25 (91)
T ss_dssp CCCCCHHHHHHHHHSSCHHHHHHH
T ss_pred cchhhhhhhhhhhccHHHHHHHHH
Confidence 4889977 8999999999976554
No 2
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=11.57 E-value=35 Score=25.19 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=34.1
Q ss_pred ChHHHhhhhhccCccccchhhhhccccchhhhhhhccCCCCC
Q 022179 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (301)
Q Consensus 130 s~~evAkQrelsgt~e~e~d~k~kKq~S~aK~KELSGsdIFa 171 (301)
..|+.|+++.+.|++.=.-.......+.+.++.+=+|+.+|.
T Consensus 13 ~YP~~a~~~~~~G~V~v~~~i~~~G~v~~~~v~~ssg~~~ld 54 (90)
T 1u07_A 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFE 54 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSH
T ss_pred CCcHHHHHCCCceEEEEEEEECCCCCEEEEEEEecCCcHHHH
Confidence 457889999999999766666777888899988888887775
No 3
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=11.12 E-value=85 Score=23.45 Aligned_cols=11 Identities=36% Similarity=0.600 Sum_probs=8.1
Q ss_pred cCCCcccCCCC
Q 022179 75 NGSGIFVANGE 85 (301)
Q Consensus 75 tGSgIF~~~~e 85 (301)
.|.|||+++.|
T Consensus 100 h~~~~~~~~~e 110 (111)
T 2ofg_X 100 HGAGEFNLKQE 110 (111)
T ss_dssp CCCCCCCCCCC
T ss_pred ccccccCCccc
Confidence 34589998876
No 4
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=9.53 E-value=1.3e+02 Score=23.52 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=15.8
Q ss_pred CCCCCc-eeeeeCCcCCHHHHHhhhhcCCCC
Q 022179 38 QPSDGV-SKVLFGGQITDEEAQSLNKKKPCS 67 (301)
Q Consensus 38 Qps~gi-s~v~Fg~q~T~eeae~l~krk~cS 67 (301)
||+.|. +...+-+.||+|++-..++|||-.
T Consensus 4 ~p~s~~~~~~~~~~~iTEe~VRryL~rkPmT 34 (82)
T 1nha_A 4 QPPSGKTTPNSGDVQVTEDAVRRYLTRKPMT 34 (82)
T ss_dssp ------------CCCCCHHHHHHHHHHSCBC
T ss_pred CCCccCcCCccCCCCCCHHHHHHHHHhCCcc
Confidence 454442 233466789999998877788865
No 5
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=8.24 E-value=1.3e+02 Score=23.88 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.7
Q ss_pred CCChHHHhhhhhccC
Q 022179 128 PTSVPEVAKQRELSG 142 (301)
Q Consensus 128 pts~~evAkQrelsg 142 (301)
-.|+.|||++|.|+-
T Consensus 32 G~sleeIA~~R~L~~ 46 (122)
T 3iuo_A 32 KVALDDIAVSHGLDF 46 (122)
T ss_dssp TCCHHHHHHHTTCCH
T ss_pred CCCHHHHHHHcCCCH
Confidence 468999999999974
No 6
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=7.28 E-value=67 Score=24.23 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=34.0
Q ss_pred ChHHHhhhhhccCccccchhhhhccccchhhhhhhccCCCCC
Q 022179 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (301)
Q Consensus 130 s~~evAkQrelsgt~e~e~d~k~kKq~S~aK~KELSGsdIFa 171 (301)
..|+-|+++.+.|++.=.-.....-.+.+.++.+=||+.+|.
T Consensus 28 ~YP~~A~~~~~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld 69 (106)
T 2k9k_A 28 VYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDANPKRMFE 69 (106)
T ss_dssp CCCSHHHHHCCCCEEEEEEEEETTTEEEEEEEEEESSSSSSH
T ss_pred CCCHHHHHcCCeeEEEEEEEECCCCcEEEEEEEEcCCcHHHH
Confidence 456789999999998766666677888999998888887775
No 7
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=6.38 E-value=1.7e+02 Score=24.06 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=16.6
Q ss_pred eeeeCCcC--CHHHHHhhhhcCCCCccccccccCC-CcccC
Q 022179 45 KVLFGGQI--TDEEAQSLNKKKPCSGYKLKEINGS-GIFVA 82 (301)
Q Consensus 45 ~v~Fg~q~--T~eeae~l~krk~cS~~K~KEmtGS-gIF~~ 82 (301)
++.|-+-+ ++||++.|. +++|+++| |+|+.
T Consensus 67 t~clveklhl~~eE~~~L~--------~I~~ia~S~~~WGg 99 (112)
T 2ip6_A 67 SQALVDKLHFTAEENKVLA--------AINELAHSQKGWGE 99 (112)
T ss_dssp HHHHHTTCCCCHHHHHHHH--------HHHHHTTC------
T ss_pred HHHHHHHHcCCHHHHHHHH--------HHHHHhcccccccc
Confidence 33444433 677776764 68999999 89953
No 8
>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune SYS; 2.60A {Finegoldia magna} PDB: 1xct_L 1xcq_L
Probab=6.31 E-value=68 Score=24.53 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=12.7
Q ss_pred CCCCCCCCcccccccCC
Q 022179 270 GSNIFADEKVESRDYFG 286 (301)
Q Consensus 270 G~dIFAdgk~~~rd~~g 286 (301)
-|-||||||-+.-++-|
T Consensus 23 ~nli~adgktqtaefkg 39 (80)
T 1xf5_L 23 VNLIFADGKIQTAEFKG 39 (80)
T ss_dssp EEEEETTSCEEEEEEEE
T ss_pred EEEEEecCceEeeeecC
Confidence 46799999988766554
No 9
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=6.14 E-value=1.5e+02 Score=20.23 Aligned_cols=8 Identities=50% Similarity=0.538 Sum_probs=5.4
Q ss_pred ccccccCC
Q 022179 12 TSDLLTWP 19 (301)
Q Consensus 12 t~dll~w~ 19 (301)
|-|||+|=
T Consensus 2 tCdlls~~ 9 (40)
T 1ica_A 2 TCDLLSGT 9 (40)
T ss_dssp CCSCSSTT
T ss_pred eEEeeccc
Confidence 56888763
No 10
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=5.87 E-value=1.7e+02 Score=20.45 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=6.9
Q ss_pred ccccccCCC
Q 022179 12 TSDLLTWPE 20 (301)
Q Consensus 12 t~dll~w~~ 20 (301)
|-|||+|.-
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 679999753
Done!