Query 022179
Match_columns 301
No_of_seqs 92 out of 94
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 15:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 32.7 14 0.0011 24.6 2.8 40 12-55 7-46 (61)
2 d1u07a_ d.212.1.2 (A:) TonB {E 25.3 4.9 0.00036 28.5 -0.9 42 130-171 13-54 (90)
3 d1oj4a2 d.58.26.5 (A:164-283) 10.5 28 0.002 25.6 0.1 13 8-20 14-26 (120)
4 d1f1fa_ a.3.1.1 (A:) Cytochrom 8.1 72 0.0053 20.8 1.5 15 47-61 63-77 (88)
5 d1cyja_ a.3.1.1 (A:) Cytochrom 7.9 74 0.0054 21.1 1.5 16 47-62 62-77 (90)
6 d1gksa_ a.3.1.1 (A:) Cytochrom 7.2 80 0.0058 21.1 1.4 15 47-61 57-71 (78)
7 d1ctja_ a.3.1.1 (A:) Cytochrom 7.2 81 0.0059 20.8 1.4 15 47-61 63-77 (89)
8 d1ueka2 d.58.26.5 (A:149-268) 6.8 49 0.0036 23.7 0.1 16 68-83 76-93 (120)
9 d1c52a_ a.3.1.1 (A:) Cytochrom 6.8 99 0.0072 22.0 1.9 23 117-139 91-113 (131)
10 d1ls9a_ a.3.1.1 (A:) Cytochrom 6.6 94 0.0069 20.4 1.5 15 47-61 65-79 (91)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=32.70 E-value=14 Score=24.64 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=28.3
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeCCcCCHH
Q 022179 12 TSDLLTWPEAPSSDSSHPPASAPRSHQPSDGVSKVLFGGQITDE 55 (301)
Q Consensus 12 t~dll~w~~~~~~~~~~~~~~~~R~~Qps~gis~v~Fg~q~T~e 55 (301)
-|||.-|...--.+. ..-.+++||+.||..|+-.|++.-+
T Consensus 7 ~ADlvvfDp~~i~d~----~~~~~~~~~~~Gi~~v~VnG~~v~~ 46 (61)
T d1m7ja2 7 YADLVVFDPATVADS----ATFEHPTERAAGIHSVYVNGAAVWE 46 (61)
T ss_dssp BCCEEEECTTTCBCC----CCSSSTTCCCBSEEEEEETTEEEEE
T ss_pred CCCEEEECHHHccCc----ccccccccccceeEEEEECCEEEEE
Confidence 488888864322222 3556889999999999888887543
No 2
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=25.32 E-value=4.9 Score=28.47 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=37.3
Q ss_pred ChHHHhhhhhccCccccchhhhhccccchhhhhhhccCCCCC
Q 022179 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (301)
Q Consensus 130 s~~evAkQrelsgt~e~e~d~k~kKq~S~aK~KELSGsdIFa 171 (301)
..|+.|+++.+.|++.=+-.......+.+.++-+=+|+++|.
T Consensus 13 ~YP~~A~~~g~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld 54 (90)
T d1u07a_ 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFE 54 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSH
T ss_pred CCCHHHHHCCCeEEEEEEEEEeCCCCEeEEEEEECCCchHHH
Confidence 478999999999999877778888899999999999999985
No 3
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=10.47 E-value=28 Score=25.62 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=9.0
Q ss_pred CCCCccccccCCC
Q 022179 8 SHVSTSDLLTWPE 20 (301)
Q Consensus 8 ~h~st~dll~w~~ 20 (301)
-|.||++.+...+
T Consensus 14 ~~vST~~if~~~~ 26 (120)
T d1oj4a2 14 VSIPTPVIFKDPE 26 (120)
T ss_dssp CCCCHHHHHTCTT
T ss_pred CCcChHHHHhCcC
Confidence 4688888876543
No 4
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=8.08 E-value=72 Score=20.80 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=12.7
Q ss_pred eeCCcCCHHHHHhhh
Q 022179 47 LFGGQITDEEAQSLN 61 (301)
Q Consensus 47 ~Fg~q~T~eeae~l~ 61 (301)
.|+.++|+||..+|.
T Consensus 63 ~~~~~Lsd~ei~~v~ 77 (88)
T d1f1fa_ 63 GFNGRLSPLQIEDVA 77 (88)
T ss_dssp CCTTTSCHHHHHHHH
T ss_pred cccCCCCHHHHHHHH
Confidence 488899999998875
No 5
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.94 E-value=74 Score=21.06 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.4
Q ss_pred eeCCcCCHHHHHhhhh
Q 022179 47 LFGGQITDEEAQSLNK 62 (301)
Q Consensus 47 ~Fg~q~T~eeae~l~k 62 (301)
.|+.++|+||.++|-.
T Consensus 62 ~~~~~Lsd~ei~~v~a 77 (90)
T d1cyja_ 62 AWADRLSEEEIQAVAE 77 (90)
T ss_dssp CCTTTSCHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHH
Confidence 5888999999988763
No 6
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=7.21 E-value=80 Score=21.06 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=12.4
Q ss_pred eeCCcCCHHHHHhhh
Q 022179 47 LFGGQITDEEAQSLN 61 (301)
Q Consensus 47 ~Fg~q~T~eeae~l~ 61 (301)
.||+.+|+||.+++.
T Consensus 57 a~g~~LsdeeI~~v~ 71 (78)
T d1gksa_ 57 AYDGRADREDLVKAI 71 (78)
T ss_dssp CCBTTBCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 588999999988764
No 7
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
Probab=7.15 E-value=81 Score=20.78 Aligned_cols=15 Identities=13% Similarity=0.519 Sum_probs=12.7
Q ss_pred eeCCcCCHHHHHhhh
Q 022179 47 LFGGQITDEEAQSLN 61 (301)
Q Consensus 47 ~Fg~q~T~eeae~l~ 61 (301)
.|++.+|+||.++|.
T Consensus 63 ~~~~~Lsd~ei~~v~ 77 (89)
T d1ctja_ 63 AWDGRLDEDEIAGVA 77 (89)
T ss_dssp CCBTTBCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 488899999998875
No 8
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=6.79 E-value=49 Score=23.66 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=11.1
Q ss_pred ccccccccCCC--cccCC
Q 022179 68 GYKLKEINGSG--IFVAN 83 (301)
Q Consensus 68 ~~K~KEmtGSg--IF~~~ 83 (301)
++..--||||| +|+-.
T Consensus 76 g~~~~~mSGSGst~F~l~ 93 (120)
T d1ueka2 76 GLRGVLMSGSGSAFFGLA 93 (120)
T ss_dssp TCEEEEECTTSSCEEEEC
T ss_pred hhhheeecCCCCeEEEEe
Confidence 44545799999 88643
No 9
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=6.78 E-value=99 Score=22.04 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=16.3
Q ss_pred ecCCcccCCCCCCChHHHhhhhh
Q 022179 117 FSAEETVSPKKPTSVPEVAKQRE 139 (301)
Q Consensus 117 Fg~e~~vsPkKpts~~evAkQre 139 (301)
||.........|.|..|||+.|+
T Consensus 91 ~gn~~~~~~~~~~t~~~v~~~R~ 113 (131)
T d1c52a_ 91 WGDAKKVKGFKPFTAEEVKKLRA 113 (131)
T ss_dssp TSTGGGSTTCCCCCHHHHHHHTT
T ss_pred cCCCCcccCCCCCCHHHHHHHHc
Confidence 44444445567889999999886
No 10
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}
Probab=6.58 E-value=94 Score=20.38 Aligned_cols=15 Identities=0% Similarity=0.448 Sum_probs=12.4
Q ss_pred eeCCcCCHHHHHhhh
Q 022179 47 LFGGQITDEEAQSLN 61 (301)
Q Consensus 47 ~Fg~q~T~eeae~l~ 61 (301)
.|++.+|+||..+|.
T Consensus 65 ~~~~~Lsdeei~~l~ 79 (91)
T d1ls9a_ 65 AWADRLDEDDIEAVS 79 (91)
T ss_dssp CCTTTSCHHHHHHHH
T ss_pred ccccCCCHHHHHHHH
Confidence 378889999998875
Done!