BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022181
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FAU|A Chain A, Crystal Structure Of Human Vps26
Length = 341
Score = 346 bits (888), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 173/299 (57%), Positives = 227/299 (75%), Gaps = 6/299 (2%)
Query: 1 MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISI---EPV 57
M++L G F P I I DG+ RK +K E+G+ LF E++SGK+++ +P
Sbjct: 3 MSFLGGFFGPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQP- 61
Query: 58 LGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPY 117
GK++EH G++IE +GQIE++ D+ N ++F +LV+EL +PGE+ + ++Y FEF VE PY
Sbjct: 62 -GKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPY 120
Query: 118 ETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIE 177
E+Y G NVRLRY LKVT+ R V EY D +V P +NNSIKMEVGIED LHIE
Sbjct: 121 ESYIGANVRLRYFLKVTIVRRLTDLVKEY-DLIVHQLATYPDVNNSIKMEVGIEDXLHIE 179
Query: 178 FEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMD 237
FEYNKSKYHLKDVI+GKIYFLLVRIKI++M+L++ ++E TG G +T ETET+AK+E+MD
Sbjct: 180 FEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMD 239
Query: 238 GAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
GAPV+GESIPIRLFL+ Y+ TPT R++N KFSV+Y+LNLVLVDEEDRRYFKQQEI ++R
Sbjct: 240 GAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWR 298
>pdb|3LH8|A Chain A, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH8|B Chain B, Crystal Structure Of Mouse Vps26b In Spacegroup P41 21 2
pdb|3LH9|A Chain A, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
pdb|3LH9|B Chain B, Crystal Structure Of Mouse Vps26b(L197sR199E) IN
SPACEGROUP P41 21 2
Length = 340
Score = 343 bits (881), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 168/289 (58%), Positives = 221/289 (76%), Gaps = 6/289 (2%)
Query: 11 ACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIE---PVLGKKVEHNGV 67
+ + I D ++RK+ K E+G+ LF E +SGK+S+ P K++EH G+
Sbjct: 13 SVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNP--NKRLEHQGI 70
Query: 68 KIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRL 127
KIE +GQIE+Y+DRGN ++F SLV++L PGEI + + + FEF+ VE PYE+Y G NV+L
Sbjct: 71 KIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKL 130
Query: 128 RYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHL 187
RY L+ T+SR VV+ D VV + P +N+SIKMEVGIEDCLHIEFEYNKSKYHL
Sbjct: 131 RYFLRATISRRLN-DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHL 189
Query: 188 KDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIP 247
KDVI+GKIYFL V IKIK+M+++I +RE+TG+G N + E +T+AK+E+MDGAPVRGESIP
Sbjct: 190 KDVIVGKIYFLSVEIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIP 249
Query: 248 IRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
IRLFL+ YELTPT R+IN KFSV+YYLNLVL+DEE+RRYFKQQE+ ++R
Sbjct: 250 IRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 298
>pdb|3LHA|A Chain A, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
pdb|3LHA|B Chain B, Crystal Structure Of Mouse Vps26b(R240sG241AE242S) IN
SPACEGROUP P41 21 2
Length = 340
Score = 342 bits (876), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/289 (57%), Positives = 220/289 (76%), Gaps = 6/289 (2%)
Query: 11 ACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIE---PVLGKKVEHNGV 67
+ + I D ++RK+ K E+G+ LF E +SGK+S+ P K++EH G+
Sbjct: 13 SVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNP--NKRLEHQGI 70
Query: 68 KIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRL 127
KIE +GQIE+Y+DRGN ++F SLV++L PGEI + + + FEF+ VE PYE+Y G NV+L
Sbjct: 71 KIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKL 130
Query: 128 RYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHL 187
RY L+ T+SR VV+ D VV + P +N+SIKMEVGIEDCLHIEFEYNKSKYHL
Sbjct: 131 RYFLRATISRRLN-DVVKEMDIVVHTLSTYPELNSSIKMEVGIEDCLHIEFEYNKSKYHL 189
Query: 188 KDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIP 247
KDVI+GKIYFL V IKIK+M+++I +RE+TG+G N + E +T+AK+E+MDGAPVRG SIP
Sbjct: 190 KDVIVGKIYFLSVEIKIKHMEIDIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGSSIP 249
Query: 248 IRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
IRLFL+ YELTPT R+IN KFSV+YYLNLVL+DEE+RRYFKQQE+ ++R
Sbjct: 250 IRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 298
>pdb|2R51|A Chain A, Crystal Structure Of Mouse Vps26b
Length = 340
Score = 340 bits (873), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 166/287 (57%), Positives = 219/287 (76%), Gaps = 2/287 (0%)
Query: 11 ACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIE-PVLGKKVEHNGVKI 69
+ + I D ++RK+ K E+G+ LF E +SGK+S+ K++EH G+KI
Sbjct: 13 SVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKI 72
Query: 70 ELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRY 129
E +GQIE+Y+DRGN ++F SLV++L PGEI + + + FEF+ VE PYE+Y G NV+LRY
Sbjct: 73 EFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRY 132
Query: 130 VLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKD 189
L+ T+SR VV+ D VV + P +N+SIK EVGIEDCLHIEFEYNKSKYHLKD
Sbjct: 133 FLRATISRRLN-DVVKEXDIVVHTLSTYPELNSSIKXEVGIEDCLHIEFEYNKSKYHLKD 191
Query: 190 VIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIR 249
VI+GKIYFLLVRIKIK+ +++I +RE+TG+G N + E +T+AK+E+ DGAPVRGESIPIR
Sbjct: 192 VIVGKIYFLLVRIKIKHXEIDIIKRETTGTGPNVYHENDTIAKYEIXDGAPVRGESIPIR 251
Query: 250 LFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296
LFL+ YELTPT R+IN KFSV+YYLNLVL+DEE+RRYFKQQE+ ++R
Sbjct: 252 LFLAGYELTPTXRDINKKFSVRYYLNLVLIDEEERRYFKQQEVVLWR 298
>pdb|4FXG|A Chain A, Complement C4 In Complex With Masp-2
pdb|4FXG|D Chain D, Complement C4 In Complex With Masp-2
pdb|4FXK|A Chain A, Human Complement C4
Length = 656
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 112 TVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIE 171
T+ + E +G+ VR + V Y S + DFV+ + + P + S + G+E
Sbjct: 154 TITVMVENSHGLRVRKKEV--------YMPSSIFQDDFVIPDISEPGTWKISARFSDGLE 205
Query: 172 DCLHIEFEYNK---SKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRR 214
+FE K + +K + GK Y L V + M L+I+ R
Sbjct: 206 SNSSTQFEVKKYVLPNFEVK-ITPGKPYILTVPGHLDEMQLDIQAR 250
>pdb|3S4T|A Chain A, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|B Chain B, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|C Chain C, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|D Chain D, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|E Chain E, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|F Chain F, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|G Chain G, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|H Chain H, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
Length = 348
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 65 NGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYP 107
NG + + +Y+D ++ F V+ LDVP ++ R P
Sbjct: 128 NGFSQDNRSAVPLYYDXAQYWPFWETVQALDVPFYLHPRNPLP 170
>pdb|2DVT|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVU|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVX|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
Length = 327
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 65 NGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYP 107
NG E GQ +Y+D + F V +LDVP ++ R P
Sbjct: 128 NGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRNPLP 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,313,117
Number of Sequences: 62578
Number of extensions: 404464
Number of successful extensions: 1038
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 9
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)