Query 022181
Match_columns 301
No_of_seqs 141 out of 389
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:38:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3063 Membrane coat complex 100.0 8E-101 2E-105 674.5 24.2 299 1-300 1-299 (301)
2 PF03643 Vps26: Vacuolar prote 100.0 1.7E-84 3.7E-89 598.8 36.5 275 8-283 1-275 (275)
3 KOG2717 Uncharacterized conser 100.0 3.1E-52 6.7E-57 367.0 23.4 254 41-298 15-301 (313)
4 KOG3780 Thioredoxin binding pr 99.9 5.3E-25 1.2E-29 214.7 31.6 266 10-294 3-315 (427)
5 PF00339 Arrestin_N: Arrestin 99.8 1.1E-21 2.3E-26 163.6 2.2 112 40-153 10-144 (149)
6 PF02752 Arrestin_C: Arrestin 98.9 1.1E-07 2.3E-12 77.5 17.1 122 172-295 3-132 (136)
7 PF08737 Rgp1: Rgp1; InterPro 98.7 2E-06 4.2E-11 84.6 21.6 102 176-280 306-413 (415)
8 PF07070 Spo0M: SpoOM protein; 98.2 9.9E-05 2.1E-09 66.5 16.6 120 10-153 11-133 (218)
9 KOG3865 Arrestin [Signal trans 98.2 0.00011 2.3E-09 68.8 16.6 268 8-300 11-351 (402)
10 PF02752 Arrestin_C: Arrestin 98.1 0.00021 4.6E-09 57.8 15.3 111 41-153 15-133 (136)
11 PF00339 Arrestin_N: Arrestin 97.3 0.0018 3.8E-08 53.4 8.7 118 176-297 3-145 (149)
12 PF13002 LDB19: Arrestin_N ter 97.1 0.0023 4.9E-08 56.3 7.8 60 95-154 42-114 (191)
13 PF07070 Spo0M: SpoOM protein; 96.8 0.056 1.2E-06 48.8 14.3 86 174-260 13-103 (218)
14 PF04425 Bul1_N: Bul1 N termin 96.4 0.023 4.9E-07 56.3 10.3 66 9-78 131-196 (438)
15 PF03643 Vps26: Vacuolar prote 95.6 0.57 1.2E-05 43.8 14.9 106 183-296 33-145 (275)
16 KOG3865 Arrestin [Signal trans 93.1 3.9 8.4E-05 38.9 14.2 49 9-78 192-240 (402)
17 COG4326 Spo0M Sporulation cont 92.6 0.8 1.7E-05 41.0 8.6 107 41-152 43-152 (270)
18 PF08737 Rgp1: Rgp1; InterPro 88.0 6.9 0.00015 38.7 11.6 91 39-136 312-412 (415)
19 PF01835 A2M_N: MG2 domain; I 87.9 10 0.00023 29.0 12.0 90 39-151 8-99 (99)
20 KOG3780 Thioredoxin binding pr 85.8 21 0.00045 34.8 13.6 111 41-154 198-318 (427)
21 KOG4469 Uncharacterized conser 79.2 43 0.00093 30.6 11.7 174 100-280 105-330 (391)
22 COG2373 Large extracellular al 56.6 85 0.0018 36.6 10.6 131 39-210 402-535 (1621)
23 PF03370 CBM_21: Putative phos 44.8 1.6E+02 0.0034 23.4 8.7 16 43-58 16-31 (113)
24 PF13002 LDB19: Arrestin_N ter 37.1 3E+02 0.0065 24.4 11.2 90 208-298 2-115 (191)
25 COG0335 RplS Ribosomal protein 34.0 1.2E+02 0.0025 24.8 5.3 45 38-88 17-61 (115)
26 KOG4785 Transcription factor C 31.2 63 0.0014 27.5 3.5 29 46-78 84-112 (177)
27 COG4326 Spo0M Sporulation cont 26.5 1.4E+02 0.0031 27.0 5.0 73 180-252 39-116 (270)
28 PF10633 NPCBM_assoc: NPCBM-as 25.1 2.7E+02 0.0058 20.1 8.2 63 43-118 2-66 (78)
29 PF07472 PA-IIL: Fucose-bindin 24.8 2.5E+02 0.0054 22.6 5.7 60 10-73 19-79 (107)
30 CHL00084 rpl19 ribosomal prote 22.7 1.4E+02 0.0031 24.3 4.1 37 37-73 18-55 (117)
31 smart00737 ML Domain involved 22.4 2.9E+02 0.0062 21.6 5.9 41 238-287 72-112 (118)
32 TIGR03000 plancto_dom_1 Planct 22.1 3.2E+02 0.007 20.5 5.5 23 128-151 43-65 (75)
33 KOG2293 Daxx-interacting prote 20.7 2.2E+02 0.0047 29.2 5.7 67 5-72 452-530 (547)
34 PF12389 Peptidase_M73: Camely 20.5 6.2E+02 0.013 22.6 11.3 91 42-134 61-192 (199)
No 1
>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-101 Score=674.50 Aligned_cols=299 Identities=68% Similarity=1.080 Sum_probs=295.5
Q ss_pred CCcccCCCCCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEc
Q 022181 1 MNYLIGAFKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFD 80 (301)
Q Consensus 1 ~~~~~~~~~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~ 80 (301)
|+|++|||+|+|+|+|.||++++|+.|+.+.++|++++.|+|++||+|+|+|.|++++||+++|+||+|+++|++|+.||
T Consensus 1 m~~l~~fF~~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGqIe~~~d 80 (301)
T KOG3063|consen 1 MNFLGGFFKPSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQIEMYYD 80 (301)
T ss_pred CchhhcccCCCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeEEEecCCcccCCCceEEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEeCCCCCCC
Q 022181 81 RGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSI 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~l~~~G~L~~g~~~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~~~~~p~~ 160 (301)
+|+.++|.+++++|+.||+|.+.++|||+|+.++++||||.|+++++||++||++.|.+ .|++++++|||+.....|+.
T Consensus 81 rgn~~eF~~lv~eLa~pGel~~~~~fpFeF~~vekpyEsY~G~NV~lrY~lkvTv~Rr~-~di~ke~d~~V~~~~~~P~~ 159 (301)
T KOG3063|consen 81 RGNFHEFTSLVRELARPGELTQSQSFPFEFPHVEKPYESYIGKNVRLRYFLKVTVSRRL-TDIVKEKDLVVHNLSTYPEI 159 (301)
T ss_pred CCcHHHHHHHHHhhcCCcceeecccCCccccccccchhhhcCcceEEEEEEEEEEEech-hhhhhhhheeeEecccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 49999999999999999999
Q ss_pred CCCceeeecccceeEEEEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCC
Q 022181 161 NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAP 240 (301)
Q Consensus 161 ~~pi~~ev~i~~~L~i~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~ 240 (301)
++||+|||||+|||||||+|+|++|||+|+|.|+|+|++++++|++||++|+|+|+.|.++++..+++|++++|||||+|
T Consensus 160 nn~IkmeVGIedCLHIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~iikrEstG~gpn~~~e~eTiakyeIMDGap 239 (301)
T KOG3063|consen 160 NNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSIIKRESTGTGPNTYVETETIAKYEIMDGAP 239 (301)
T ss_pred CCceeEeechhhceEEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEEEEeecccCCCcceeccceeeeEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcEEEEeeEEEEEEecCC
Q 022181 241 VRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQEN 300 (301)
Q Consensus 241 ~rg~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~k~~~I~L~R~~~~ 300 (301)
+|||+||||+||.+++||||++++|++|||+|+|||+|+|||||||||||||+|||+++.
T Consensus 240 vrGEsIPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeedRRYFKQqEItLwR~~d~ 299 (301)
T KOG3063|consen 240 VRGESIPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEEDRRYFKQQEITLWRKADE 299 (301)
T ss_pred cCCCeeeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhhhhhhhheeEEEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999875
No 2
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=100.00 E-value=1.7e-84 Score=598.80 Aligned_cols=275 Identities=56% Similarity=0.954 Sum_probs=229.0
Q ss_pred CCCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCCeEEE
Q 022181 8 FKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDF 87 (301)
Q Consensus 8 ~~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~~~~~ 87 (301)
||++|+|+|+||++++||+++++.++|+++++|+|++||+|+|+|+|++++||+++|+||+|++.|++|++|+++++++|
T Consensus 1 f~~~~~i~i~l~~~~~rk~v~~~~~~~~~~~~~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~ie~~~~~~k~~~f 80 (275)
T PF03643_consen 1 FGPPCDIDIELDDEDSRKKVEVKTDDGKKEKNPIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQIEAFYDSGKPIEF 80 (275)
T ss_dssp TTTTEEEEEEETTCCCS-EEEEE-TTS-EEEEEEEETC--EEEEEEEEESSTS-EEES-EEEEEEEEEEEGCCTT-EEEE
T ss_pred CCCceEEEEEECCCcccceEEEECCCCCEEEeceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEeEeEeccCCCceEe
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCCcccCCCceEEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEeCCCCCCCCCCceee
Q 022181 88 TSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKME 167 (301)
Q Consensus 88 ~~~~~~l~~~G~L~~g~~~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~~~~~p~~~~pi~~e 167 (301)
++.+.+|++||+|++|++|||+|++.++.||||||++++|||+|||+|.|+| .|+++++||||++....|+...|++||
T Consensus 81 ~~~~~eL~~~G~l~~~~t~pFeF~~~~k~yETY~G~~v~i~Y~lrv~v~R~~-~~i~k~~ef~V~~~~~~p~~~~~ik~e 159 (275)
T PF03643_consen 81 LSLSIELAPPGKLPEGKTFPFEFPLVEKPYETYHGVNVNIRYFLRVTVKRSY-KDISKEQEFWVQNFSITPESNQPIKME 159 (275)
T ss_dssp EEEEEEEE-SEEE-S-EEEEEEE-SB---S--EE-SSEEEEEEEEEEE--SS-S-EEEEEEEEEE-EB--------EEEE
T ss_pred EEeeEEEcCCcccCCCcEEeeEeCCCCCCCccEeeeEEEEEEEEEEEEEccC-CCcceEEEEEEEeccCCCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 899999999999998899999999999
Q ss_pred ecccceeEEEEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCCCCCceee
Q 022181 168 VGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIP 247 (301)
Q Consensus 168 v~i~~~L~i~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~~rg~~IP 247 (301)
+|+++||||+|+|+++.||++|+|+|+|+|++++++|+|||+||+|+|||++++++.+|+++||++|||||+||||++||
T Consensus 160 vgie~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLiR~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IP 239 (275)
T PF03643_consen 160 VGIEDCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLIRVETCGCGENYAKESTEIQKIEIMDGAPCRGESIP 239 (275)
T ss_dssp ECETTTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEEEEEEECECCCEEEEEEEEEEEEEESS---TT-EEE
T ss_pred cCCCccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEEEEEEEecCCcccccceEEEEEEeecCCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcCCCccccccceEEEEEEEEEEEEECCC
Q 022181 248 IRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEED 283 (301)
Q Consensus 248 irl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~ 283 (301)
|||||+++.+|||+++++++|||+|+|||+||||||
T Consensus 240 irl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlide~d 275 (275)
T PF03643_consen 240 IRLFLPRLFLCPTYKNVNNKFSVEYELNLVLIDEDD 275 (275)
T ss_dssp EEEECCCT-----EEEECTTEEEEEEEEEEEEETT-
T ss_pred EEEEcCCcccCCcchhcCCcEEEEEEEEEEEEcCCC
Confidence 999999999999999999999999999999999997
No 3
>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only]
Probab=100.00 E-value=3.1e-52 Score=367.03 Aligned_cols=254 Identities=20% Similarity=0.399 Sum_probs=225.3
Q ss_pred eecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEE------------EcCCCeEEEEEeEEEecCCcccCCCce-EE
Q 022181 41 LFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMY------------FDRGNFYDFTSLVRELDVPGEIYERKT-YP 107 (301)
Q Consensus 41 iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~------------~~~~~~~~~~~~~~~l~~~G~L~~g~~-~p 107 (301)
+|++||.+.|+|++.++. .++|+||++.++|.++++ |++.++++.++.+.++..||++|+|++ +|
T Consensus 15 iy~s~e~l~G~vvi~sa~--s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK~p~G~tEip 92 (313)
T KOG2717|consen 15 IYRSSEPLEGKVVIKSAT--SISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGKIPPGTTEIP 92 (313)
T ss_pred eeecCCccceeEEEEecc--ccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCCCCCCceeee
Confidence 999999999999999997 789999999999999886 445568999999999999999999999 99
Q ss_pred EEEeCC-----CCCCCeeEEeeeEEEEEEEEEEEecCCC-CceEEEEEEEEeCCC-CCC-CCCCceeeecc---------
Q 022181 108 FEFSTV-----EMPYETYNGVNVRLRYVLKVTVSRGYGG-SVVEYQDFVVRNYTP-PPS-INNSIKMEVGI--------- 170 (301)
Q Consensus 108 F~F~l~-----~~~~eSy~G~~~~irY~vkv~i~R~~~~-~~~~~~eF~V~~~~~-~p~-~~~pi~~ev~i--------- 170 (301)
|+|+|. +++||||||++++|+|.++|+|+|+++. ++++.+||.|++... -|+ ...++-+-+.+
T Consensus 93 FelpL~~kge~~~lYETyHGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv~l~e~~p~iV~F~itpdtlq~~~ke 172 (313)
T KOG2717|consen 93 FELPLREKGEGEKLYETYHGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPVDLPERPPEIVIFYITPDTLQHPLKE 172 (313)
T ss_pred eeeeeccCCCccEeeeeecceEEEEEEEEEEecccchhcCchhhhheeeeccCCcccccCCCcceEEEEChHHhhccchh
Confidence 999987 3599999999999999999999999987 999999999998532 222 12222233222
Q ss_pred ---cceeEEEEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCCCCCceee
Q 022181 171 ---EDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIP 247 (301)
Q Consensus 171 ---~~~L~i~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~~rg~~IP 247 (301)
..-+.+...++.+.|++.|+++|+++++++..+|+|||+||+|+|||||++++.+|+++||++||+||++||+.+.|
T Consensus 173 r~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQIADGdVcr~l~lP 252 (313)
T KOG2717|consen 173 RIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQIADGDVCRNLTLP 252 (313)
T ss_pred hccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEEeccCccccCCcee
Confidence 11245899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcEEEEeeEEEEEEec
Q 022181 248 IRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYRLQ 298 (301)
Q Consensus 248 irl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~k~~~I~L~R~~ 298 (301)
|.+-|+.+..|||. ...-|+|+|++|+++.+.+|....+++.+.|||.-
T Consensus 253 IymvlPRLftCPtl--~t~nFkvEFevni~v~fk~d~~~~enf~~~L~r~~ 301 (313)
T KOG2717|consen 253 IYMVLPRLFTCPTL--FTGNFKVEFEVNITVSFKSDLAKAENFAPRLWRAL 301 (313)
T ss_pred EEEEechhhcCCce--eccccEEEEEEEEEEEEccchhhccCCchHHHHhc
Confidence 98888778888886 35669999999999999999999999999999963
No 4
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=99.95 E-value=5.3e-25 Score=214.71 Aligned_cols=266 Identities=14% Similarity=0.152 Sum_probs=199.4
Q ss_pred CceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCC------
Q 022181 10 PACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGN------ 83 (301)
Q Consensus 10 ~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~------ 83 (301)
....++|.||... ++|.+||.++|+|+++.++ +++.++|+|++.|.+.+.|....
T Consensus 3 ~~~~~~i~~d~~~-----------------~iy~~G~~vsG~v~l~~~~--~~~~~~i~l~~~G~~~t~w~~~~~~~~~~ 63 (427)
T KOG3780|consen 3 TMSSFEIVLDNPE-----------------AIYFPGEPVSGSVVLSTKE--PIKVRAIKLQLKGRARTSWSESERGTKLN 63 (427)
T ss_pred CcceEEEEeCCCc-----------------cccCCCCeEEEEEEEEeCC--ccceeEEEEEEEEeEEEeecccccccccc
Confidence 3456789998765 3999999999999998886 78999999999999999997431
Q ss_pred ----------------eEEEEEeEEEe--cCCc--c--cCCCce-EEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCC
Q 022181 84 ----------------FYDFTSLVREL--DVPG--E--IYERKT-YPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYG 140 (301)
Q Consensus 84 ----------------~~~~~~~~~~l--~~~G--~--L~~g~~-~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~ 140 (301)
..+|+.....+ ..+| . |++|.| |||+|.||..+|+||+|.+|.|||+|+|+++|+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~~P~Sfeg~~G~irY~vk~~idr~~~ 143 (427)
T KOG3780|consen 64 SKSEGSIKSSTVNYTAKETYLDSKTILWTSSNGSNSRVLPPGNYEFPFSFTLPLNLPPSFEGKFGHVRYFVKAEIDRPWK 143 (427)
T ss_pred cccccccccceEEeeceEEEeeeeeEEeeccCCCCceecCCCceEEeEeccCCCCCCCceeeCCceEEEEEEEEEecCCC
Confidence 24555554444 2344 4 899999 99999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEeC---CCCCCCCCCceeeecc--------cceeEEEEEEeeeeEEcCCcEEEEEEEE-EeeeeeeEEE
Q 022181 141 GSVVEYQDFVVRNY---TPPPSINNSIKMEVGI--------EDCLHIEFEYNKSKYHLKDVIIGKIYFL-LVRIKIKNMD 208 (301)
Q Consensus 141 ~~~~~~~eF~V~~~---~~~p~~~~pi~~ev~i--------~~~L~i~f~~~k~~y~l~d~i~G~i~f~-~s~~~Ik~ie 208 (301)
.+....+.|.|... +..|....|+...... ..++.+++.+++++|.+|+.+...+.+. .++..++.+.
T Consensus 144 ~~~~~~~~~~V~~~~~ln~~p~~~~~~~~~~~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~ 223 (427)
T KOG3780|consen 144 LNKKNRKPFTVIETVDLNSSPSLLEPIISKASKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVK 223 (427)
T ss_pred CCccceeeEEEecccccccCccccCcchhhhhheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeE
Confidence 99999999999874 4456555555544332 3456789999999999999999999995 6688999999
Q ss_pred EEEEEEEEecCCCc----eeEEeeEEEEEEEEeCCCCCCceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECC--
Q 022181 209 LEIRRRESTGSGAN----THVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEE-- 282 (301)
Q Consensus 209 l~LiR~Et~~~~~~----~~~e~~~i~~~qi~dG~~~rg~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~-- 282 (301)
+.|++.+.+..... ..+..+.......+.+.+..+..-=+...+..+..+|+....|..++|+|.|.+.+....
T Consensus 224 ~~l~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~iP~~~Ps~~~~~~~i~v~y~l~v~~~~~~~~ 303 (427)
T KOG3780|consen 224 AKLIQKISYLAFSYGEHTKTKKSEKTLIKSRGSLEVAPRSEDKFEKELRIPPVPPSILPDTPIIRVEYELKVTLKTSSLR 303 (427)
T ss_pred EEEEEEEEEEeecCCccccceeeeeEEeeeccccccCCCCccccceEEEcCCCCCccCCCCceEEEEEEEEEEEecCccc
Confidence 99999999977542 222222322223334444443333333333345555887777899999999999996653
Q ss_pred CcEEEEeeEEEE
Q 022181 283 DRRYFKQQEITI 294 (301)
Q Consensus 283 ~~~y~k~~~I~L 294 (301)
+.......+|.+
T Consensus 304 ~~~~~l~~pi~i 315 (427)
T KOG3780|consen 304 HSELALELPIII 315 (427)
T ss_pred ccceeeeeceEE
Confidence 333333456654
No 5
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=99.83 E-value=1.1e-21 Score=163.65 Aligned_cols=112 Identities=23% Similarity=0.346 Sum_probs=78.3
Q ss_pred eeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCC--eEEEE----------------EeEEEec----CC
Q 022181 40 PLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGN--FYDFT----------------SLVRELD----VP 97 (301)
Q Consensus 40 ~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~--~~~~~----------------~~~~~l~----~~ 97 (301)
++|++||.|+|+|.|.+.+ ++..++|+|++.|.+.+.|.... ..... .....+. .+
T Consensus 10 ~~y~~Ge~I~G~V~l~~~~--~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (149)
T PF00339_consen 10 PVYFPGEVISGKVVLELSK--PIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQLWGSEDGP 87 (149)
T ss_dssp EEEESS--EEEEEEECTTT---TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHHHHH----
T ss_pred CEECCCCEEEEEEEEEECC--ccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEeeeeccce
Confidence 3999999999999998876 78999999999999999997432 11111 1111111 13
Q ss_pred cccCCCce-EEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEe
Q 022181 98 GEIYERKT-YPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRN 153 (301)
Q Consensus 98 G~L~~g~~-~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~ 153 (301)
+.|++|.| |||+|.||..+|+||+|.+++|+|.|+|+++|||..+...+++|+|..
T Consensus 88 ~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l~~~~~~~~~~~~~~~v~~ 144 (149)
T PF00339_consen 88 NILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATLDRPGKKDHKAKREFTVVE 144 (149)
T ss_dssp ----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEESSTTSE--CGGEEEEEEE
T ss_pred ecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEEECCCCCCcEEEEEEEEEC
Confidence 57999999 999999999999999999999999999999999988999999999986
No 6
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.94 E-value=1.1e-07 Score=77.47 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=80.7
Q ss_pred ceeEEEEEEeeeeEEcCCcEEEEEEE-EEeeeeeeEEEEEEEEEEEecCCCc---eeEEeeEEEEEEEEeCCCCCCceee
Q 022181 172 DCLHIEFEYNKSKYHLKDVIIGKIYF-LLVRIKIKNMDLEIRRRESTGSGAN---THVETETLAKFELMDGAPVRGESIP 247 (301)
Q Consensus 172 ~~L~i~f~~~k~~y~l~d~i~G~i~f-~~s~~~Ik~iel~LiR~Et~~~~~~---~~~e~~~i~~~qi~dG~~~rg~~IP 247 (301)
+.+++++.+++++|.+||.+...+.+ +.++.+|+++++.|+|..++.+..+ .......+.. ...+.+..+..-+
T Consensus 3 g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~ 80 (136)
T PF02752_consen 3 GKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAK--SKNCGVDPGSSGS 80 (136)
T ss_dssp EEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEE--EECCEB-B-TTEE
T ss_pred CEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEE--EecCCccCCCCce
Confidence 56889999999999999999988888 4777899999999999999987643 3444444444 3444555666666
Q ss_pred EE--EeeCCC-cCCCccccccceEEEEEEEEEEEEEC-CCcEEEEeeEEEEE
Q 022181 248 IR--LFLSPY-ELTPTHRNINNKFSVKYYLNLVLVDE-EDRRYFKQQEITIY 295 (301)
Q Consensus 248 ir--l~l~~~-~ltPt~~~~~~~fsV~y~lnlvli~~-~~~~y~k~~~I~L~ 295 (301)
+. ..+.-+ .++||....++.++|+|+|.+.+... -.....-+.||.+.
T Consensus 81 ~~~~~~l~lP~~~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~ 132 (136)
T PF02752_consen 81 FEFNIQLQLPSNLPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIG 132 (136)
T ss_dssp EEEEEEE-----B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEE
T ss_pred EEEEEEEcCCCccCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEE
Confidence 65 666555 89998766799999999999999887 44566667888764
No 7
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=98.74 E-value=2e-06 Score=84.60 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred EEEEEeeeeEEcCCcEEEEEEEEEee-eeeeEEEEEEEEEEEecCCC----c-eeEEeeEEEEEEEEeCCCCCCceeeEE
Q 022181 176 IEFEYNKSKYHLKDVIIGKIYFLLVR-IKIKNMDLEIRRRESTGSGA----N-THVETETLAKFELMDGAPVRGESIPIR 249 (301)
Q Consensus 176 i~f~~~k~~y~l~d~i~G~i~f~~s~-~~Ik~iel~LiR~Et~~~~~----~-~~~e~~~i~~~qi~dG~~~rg~~IPir 249 (301)
..|.+.|..|.+||.|.|.+.|.... +++..+.+.|-..|++...- . .....+.-.-.+-.+-+--.-..++|.
T Consensus 306 a~~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~f~ 385 (415)
T PF08737_consen 306 ARLSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHHEICLDSRSRTSFS 385 (415)
T ss_pred EEEEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEeeeecCCcceEEEE
Confidence 35677788999999999999998888 99999999999999974321 0 011111111122222222122257777
Q ss_pred EeeCCCcCCCccccccceEEEEEEEEEEEEE
Q 022181 250 LFLSPYELTPTHRNINNKFSVKYYLNLVLVD 280 (301)
Q Consensus 250 l~l~~~~ltPt~~~~~~~fsV~y~lnlvli~ 280 (301)
+.+ |...||+|. .+.|+++|.|++..+.
T Consensus 386 l~I-P~~~tp~F~--T~~v~lkW~LrfeFv~ 413 (415)
T PF08737_consen 386 LPI-PLSATPQFQ--TSGVSLKWRLRFEFVT 413 (415)
T ss_pred eeC-CCCCCCceE--eCCEEEEEEEEEEEEe
Confidence 777 788999984 7889999999988764
No 8
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=98.21 E-value=9.9e-05 Score=66.50 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=90.8
Q ss_pred CceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCC-eEEEE
Q 022181 10 PACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGN-FYDFT 88 (301)
Q Consensus 10 ~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~-~~~~~ 88 (301)
-+++||-.|++. -|.+||+|+|.|.|+--+ ..-+.++|.+.+.=..+...+.+. ..+..
T Consensus 11 G~akVDT~L~~~-------------------~~~pGe~v~G~V~i~GG~-v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~ 70 (218)
T PF07070_consen 11 GGAKVDTVLEKP-------------------SVRPGETVRGEVHIKGGS-VDQEIDRIYLELVTRYEVESDDKEYTQEVE 70 (218)
T ss_pred CCceEEEEECCC-------------------CccCCCEEEEEEEEEeCC-cceEEeEEEEEEEEEEEEecCCCeEEEEEE
Confidence 457888888753 689999999999998532 256899999999966665433222 33333
Q ss_pred EeEEEecCCcccCCCce--EEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEe
Q 022181 89 SLVRELDVPGEIYERKT--YPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRN 153 (301)
Q Consensus 89 ~~~~~l~~~G~L~~g~~--~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~ 153 (301)
-....++.+-.|.+|.+ +||+|++|...|-|- ...+|.|+-.++-.+.-|-.-.-.+.|+.
T Consensus 71 ~~~~~v~~~f~I~~ge~~~iPF~~~lP~etPiT~----~~~~v~l~T~LdI~~avD~~D~D~i~V~P 133 (218)
T PF07070_consen 71 LARVRVSGPFTIEPGEEKEIPFSFPLPWETPITE----GGMRVWLRTGLDIAGAVDPGDLDPIEVEP 133 (218)
T ss_pred EEEEEeCCCEEECCCCEEEEeEEEECCCCCCccC----CCcEEEEEEEEEeCCCCCCCCceeEEEeC
Confidence 34556677778999976 999999998877666 57889999999988877888788888863
No 9
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=98.19 E-value=0.00011 Score=68.78 Aligned_cols=268 Identities=18% Similarity=0.220 Sum_probs=156.2
Q ss_pred CCCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCC----
Q 022181 8 FKPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGN---- 83 (301)
Q Consensus 8 ~~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~---- 83 (301)
.+|...|.+-|. +|+.+..-+ -=|.|.|.|.|... =++-|-+.+++. +...|.+..
T Consensus 11 ~SpNgkiT~YLg---kRDFvDhvd------------~vdPvDGvVlvDpe---YlK~RKvfv~L~--caFRYGREDldVl 70 (402)
T KOG3865|consen 11 ASPNGKITVYLG---KRDFVDHVD------------QVDPVDGVVLVDPE---YLKDRKVFVQLT--CAFRYGREDLDVL 70 (402)
T ss_pred cCCCCcEEEEec---ccccccccc------------cccccceeEEEChH---HhccceEEEEEE--eeeecccccceee
Confidence 467778888875 455553321 12788999988754 234455666655 222343322
Q ss_pred ----eEEEEEeEEEecCCccc-------------CCCce-EEEEEeCCCCCCCee--------EEeeeEEEEEEEEEEEe
Q 022181 84 ----FYDFTSLVRELDVPGEI-------------YERKT-YPFEFSTVEMPYETY--------NGVNVRLRYVLKVTVSR 137 (301)
Q Consensus 84 ----~~~~~~~~~~l~~~G~L-------------~~g~~-~pF~F~l~~~~~eSy--------~G~~~~irY~vkv~i~R 137 (301)
+.+++....++.|+++. --|.+ |||.|..|+.+|.|- .|+---+.|.||+=+--
T Consensus 71 GLtFrKdL~~~~~Qv~Pp~~~~~plT~lQErLlkKLG~nAyPF~f~~pp~~P~SVtLQp~p~D~gKpcGVdyevkaF~~~ 150 (402)
T KOG3865|consen 71 GLTFRKDLYLATVQVYPPPEDSRPLTRLQERLLKKLGSNAYPFTFEFPPNLPCSVTLQPGPEDTGKPCGVDYEVKAFVAD 150 (402)
T ss_pred eeEEEeeeEEEEEEeeCCCcCCCcccHHHHHHHHHhCCCCCceEEeCCCCCCceEEeccCCccCCCcccceEEEEEEecC
Confidence 45555556666665321 23667 999999998888764 56666799999986643
Q ss_pred cCCCCc---eEEEEEEEEeCCCCCCC--CCCceeeecc-----cceeEEEEEEeeeeEEcCCcEEEEEEE-EEeeeeeeE
Q 022181 138 GYGGSV---VEYQDFVVRNYTPPPSI--NNSIKMEVGI-----EDCLHIEFEYNKSKYHLKDVIIGKIYF-LLVRIKIKN 206 (301)
Q Consensus 138 ~~~~~~---~~~~eF~V~~~~~~p~~--~~pi~~ev~i-----~~~L~i~f~~~k~~y~l~d~i~G~i~f-~~s~~~Ik~ 206 (301)
.-- +- .......+....-.|.. .+| ..++.. .++||+++.+++-.|+=|++|...|++ |.|+..+|.
T Consensus 151 s~e-dk~hKr~sVrL~IRKvqyAP~~~GpqP-~~~v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKk 228 (402)
T KOG3865|consen 151 SEE-DKIHKRNSVRLVIRKVQYAPLEPGPQP-SAEVSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKK 228 (402)
T ss_pred Ccc-cccccccceeeeeeeeeecCCCCCCCc-hhHhhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeee
Confidence 321 11 11122222222111111 111 112221 246999999999999999999999999 577788888
Q ss_pred EEEEEEEEEE-ecCCCceeEEeeEEEEEEEEeCCCCC-CceeeEEEeeCCCc---------------------CCC----
Q 022181 207 MDLEIRRRES-TGSGANTHVETETLAKFELMDGAPVR-GESIPIRLFLSPYE---------------------LTP---- 259 (301)
Q Consensus 207 iel~LiR~Et-~~~~~~~~~e~~~i~~~qi~dG~~~r-g~~IPirl~l~~~~---------------------ltP---- 259 (301)
|.+.+++.-. |--. +..-..+++..|--||+++. |.+.-=-++|+|+. |+.
T Consensus 229 IK~~V~Q~adi~Lfs--~aqy~~~VA~~E~~eGc~v~Pgstl~Kvf~l~PllanN~dkrGlALDG~lKhEDtnLASSTii 306 (402)
T KOG3865|consen 229 IKISVRQVADICLFS--TAQYKKPVAMEETDEGCPVAPGSTLSKVFTLTPLLANNKDKRGLALDGKLKHEDTNLASSTII 306 (402)
T ss_pred eEEEeEeeceEEEEe--cccccceeeeeecccCCccCCCCeeeeeEEechhhhcCcccccccccccccccccccchhhee
Confidence 8888777442 2211 12334678888888888764 43332233443331 111
Q ss_pred ---ccccccceEEEEEEEEEEEEEC--CCcEEEEeeEEEEEEecCC
Q 022181 260 ---THRNINNKFSVKYYLNLVLVDE--EDRRYFKQQEITIYRLQEN 300 (301)
Q Consensus 260 ---t~~~~~~~fsV~y~lnlvli~~--~~~~y~k~~~I~L~R~~~~ 300 (301)
.-+..+ .+-|+|.+.+-++-. -+--..-..|.+|.+-+|+
T Consensus 307 ~~~~~re~l-GI~VsY~VkVkL~vs~ll~ge~~~ElPF~LmhPkP~ 351 (402)
T KOG3865|consen 307 REGADREAL-GILVSYKVKVKLVVSRLLGGEVAAELPFTLMHPKPG 351 (402)
T ss_pred cCCCCccee-EEEEEEEEEEEEEEecccCCceeeecceEEecCCCC
Confidence 111112 356899988877643 2333455678888877753
No 10
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=98.11 E-value=0.00021 Score=57.85 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred eecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCC--CeEEEEEeEEEecCCcccCCCce-EE--EEEeCCCC
Q 022181 41 LFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRG--NFYDFTSLVRELDVPGEIYERKT-YP--FEFSTVEM 115 (301)
Q Consensus 41 iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~--~~~~~~~~~~~l~~~G~L~~g~~-~p--F~F~l~~~ 115 (301)
.|.+||.+.-.+.|.+.. +.+.++|++++.-.+......+ .....-.........+-.+.+.. +. ..|.+|..
T Consensus 15 ~~~~Ge~i~v~v~i~n~s--~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~lP~~ 92 (136)
T PF02752_consen 15 AYVPGETIPVNVEIDNQS--KKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAKSKNCGVDPGSSGSFEFNIQLQLPSN 92 (136)
T ss_dssp EEETT--EEEEEEEEE-S--SSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEEEECCEB-B-TTEEEEEEEEE-----
T ss_pred EECCCCEEEEEEEEEECC--CCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEEEecCCccCCCCceEEEEEEEcCCCc
Confidence 799999999999999765 5699999999998776553322 22222222222222222233333 66 88889977
Q ss_pred CCCee--EEeeeEEEEEEEEEEEecCC-CCceEEEEEEEEe
Q 022181 116 PYETY--NGVNVRLRYVLKVTVSRGYG-GSVVEYQDFVVRN 153 (301)
Q Consensus 116 ~~eSy--~G~~~~irY~vkv~i~R~~~-~~~~~~~eF~V~~ 153 (301)
+++|. .|..+++.|.|++++.-++. .++..+.++.+..
T Consensus 93 ~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~ 133 (136)
T PF02752_consen 93 LPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGS 133 (136)
T ss_dssp B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB
T ss_pred cCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEe
Confidence 76676 89999999999999998853 3788888887754
No 11
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=97.27 E-value=0.0018 Score=53.44 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=66.6
Q ss_pred EEEEEeeeeEEcCCcEEEEEEEEEee-eeeeEEEEEEEEEEEecCCCce---eEEee------------EEEEE--EEE-
Q 022181 176 IEFEYNKSKYHLKDVIIGKIYFLLVR-IKIKNMDLEIRRRESTGSGANT---HVETE------------TLAKF--ELM- 236 (301)
Q Consensus 176 i~f~~~k~~y~l~d~i~G~i~f~~s~-~~Ik~iel~LiR~Et~~~~~~~---~~e~~------------~i~~~--qi~- 236 (301)
|.+.-++..|..||.|.|+|.+...+ ++++++.++|.-.+.+...... ..... ++.+. .+.
T Consensus 3 I~ld~~~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (149)
T PF00339_consen 3 IELDNPKPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQLWG 82 (149)
T ss_dssp EEES-SEEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHHHH
T ss_pred EEECCCCCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEeee
Confidence 44445589999999999999997444 7999999999999988654211 11110 00000 000
Q ss_pred ----eCCCCCC-ceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECCC-cEEEEeeEEEEEEe
Q 022181 237 ----DGAPVRG-ESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEED-RRYFKQQEITIYRL 297 (301)
Q Consensus 237 ----dG~~~rg-~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~-~~y~k~~~I~L~R~ 297 (301)
.+....| -..||.+.| |..++||+... .-+|+|.|...| +..+ ...-...+|++.+.
T Consensus 83 ~~~~~~~l~~G~~~fpF~f~L-P~~lP~S~~~~--~g~I~Y~l~a~l-~~~~~~~~~~~~~~~v~~~ 145 (149)
T PF00339_consen 83 SEDGPNILPPGEYEFPFEFQL-PSNLPSSFEGS--HGSIRYKLKATL-DRPGKKDHKAKREFTVVEP 145 (149)
T ss_dssp H--------C-TTEEEEEE----TTS--SEEEE---SEEEEEEEEEE-SSTTSE--CGGEEEEEEEE
T ss_pred eccceecccCCCEEEEEEEEC-CCCCCceEecc--CcCEEEEEEEEE-ECCCCCCcEEEEEEEEECc
Confidence 1111123 568999999 57888888643 339999999999 4333 33334566666654
No 12
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=97.08 E-value=0.0023 Score=56.34 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=47.6
Q ss_pred cCCcccCCCce-EEEEEeCCCCCCCeeE---EeeeEEEEEEEEEEEe--cC------CC-CceEEEEEEEEeC
Q 022181 95 DVPGEIYERKT-YPFEFSTVEMPYETYN---GVNVRLRYVLKVTVSR--GY------GG-SVVEYQDFVVRNY 154 (301)
Q Consensus 95 ~~~G~L~~g~~-~pF~F~l~~~~~eSy~---G~~~~irY~vkv~i~R--~~------~~-~~~~~~eF~V~~~ 154 (301)
..+-.|+.|.| |||++-+|..+|.|-. +..+.|.|.+.|++.. |- +. .+.-++.+.|.+.
T Consensus 42 ~~~t~l~~G~h~fPFS~LiPG~LPaS~~lgs~~l~~I~Yel~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rs 114 (191)
T PF13002_consen 42 THPTTLTKGSHAFPFSYLIPGHLPASMDLGSTPLVSIKYELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRS 114 (191)
T ss_pred cCccccCCCcccCCeeEECCCCCccccccCCCCcEEEEEEEEEEEEEccCccccCCCcceeEEEeeeEEEEEe
Confidence 45567999999 9999999999999999 9999999999999987 21 11 1455566777663
No 13
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=96.77 E-value=0.056 Score=48.81 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=67.5
Q ss_pred eEEEEEEeeeeEEcCCcEEEEEEEE--EeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeCCCCC---CceeeE
Q 022181 174 LHIEFEYNKSKYHLKDVIIGKIYFL--LVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVR---GESIPI 248 (301)
Q Consensus 174 L~i~f~~~k~~y~l~d~i~G~i~f~--~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG~~~r---g~~IPi 248 (301)
..++..+++..|.+|+.+.|+|++. .++-.|.+|++.|+..-....+++..+...+++++++.++-.++ -..|||
T Consensus 13 akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF 92 (218)
T PF07070_consen 13 AKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPF 92 (218)
T ss_pred ceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeE
Confidence 4577888999999999999999996 66779999999999877666666556677789999988765443 245899
Q ss_pred EEeeCCCcCCCc
Q 022181 249 RLFLSPYELTPT 260 (301)
Q Consensus 249 rl~l~~~~ltPt 260 (301)
.+.| |+.++.|
T Consensus 93 ~~~l-P~etPiT 103 (218)
T PF07070_consen 93 SFPL-PWETPIT 103 (218)
T ss_pred EEEC-CCCCCcc
Confidence 9888 5554444
No 14
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=96.45 E-value=0.023 Score=56.25 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEE
Q 022181 9 KPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMY 78 (301)
Q Consensus 9 ~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~ 78 (301)
.++++|+|.+-..-..+.+.-.. -..+-=|..||.|.|-|+|+++..+++...=+.|.|+|.+.+.
T Consensus 131 s~~l~I~I~~Tk~v~~~g~p~~i----d~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v~ 196 (438)
T PF04425_consen 131 SSPLEIEIYVTKDVGKPGKPPEI----DPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISVV 196 (438)
T ss_pred CCceEEEEEEeccCCCCCCCccc----CcccccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEEc
Confidence 35899999997644433321111 1233469999999999999999888999999999999999765
No 15
>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.
Probab=95.58 E-value=0.57 Score=43.80 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=64.3
Q ss_pred eeEEcCCcEEEEEEEEEee---eeeeEEEEEEEE-EEEecCCCcee---EEeeEEEEEEEEeCCCCCCceeeEEEeeCCC
Q 022181 183 SKYHLKDVIIGKIYFLLVR---IKIKNMDLEIRR-RESTGSGANTH---VETETLAKFELMDGAPVRGESIPIRLFLSPY 255 (301)
Q Consensus 183 ~~y~l~d~i~G~i~f~~s~---~~Ik~iel~LiR-~Et~~~~~~~~---~e~~~i~~~qi~dG~~~rg~~IPirl~l~~~ 255 (301)
..|..||.+.|+|.+.... +.-.+|.++|+- .|.+....+.. ..+.+++ .-|.-..|.++||-+.+-+.
T Consensus 33 ~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~ie~~~~~~k~~~f~~~~~eL~----~~G~l~~~~t~pFeF~~~~k 108 (275)
T PF03643_consen 33 PIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQIEAFYDSGKPIEFLSLSIELA----PPGKLPEGKTFPFEFPLVEK 108 (275)
T ss_dssp EEEETC--EEEEEEEEESSTS-EEES-EEEEEEEEEEEGCCTT-EEEEEEEEEEEE-----SEEE-S-EEEEEEE-SB--
T ss_pred ceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEeEeEeccCCCceEeEEeeEEEc----CCcccCCCcEEeeEeCCCCC
Confidence 4689999999999997554 566668888875 45654433221 1222222 35777788889998877443
Q ss_pred cCCCccccccceEEEEEEEEEEEEECCCcEEEEeeEEEEEE
Q 022181 256 ELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITIYR 296 (301)
Q Consensus 256 ~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~k~~~I~L~R 296 (301)
. .+||..++ ++++|+|.+.+.-.- ....|++|+-.+.
T Consensus 109 ~-yETY~G~~--v~i~Y~lrv~v~R~~-~~i~k~~ef~V~~ 145 (275)
T PF03643_consen 109 P-YETYHGVN--VNIRYFLRVTVKRSY-KDISKEQEFWVQN 145 (275)
T ss_dssp --S--EE-SS--EEEEEEEEEEE--SS-S-EEEEEEEEEE-
T ss_pred C-CccEeeeE--EEEEEEEEEEEEccC-CCcceEEEEEEEe
Confidence 3 88987665 899999999997665 7889999998774
No 16
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=93.15 E-value=3.9 Score=38.95 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=39.7
Q ss_pred CCceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEE
Q 022181 9 KPACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMY 78 (301)
Q Consensus 9 ~~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~ 78 (301)
..++.++..||.+ +|+-||.++-.|.|++...| .++-|++.+.-.+++.
T Consensus 192 ~~~lhLevsLDkE-------------------iYyHGE~isvnV~V~NNsnK--tVKkIK~~V~Q~adi~ 240 (402)
T KOG3865|consen 192 DGPLHLEVSLDKE-------------------IYYHGEPISVNVHVTNNSNK--TVKKIKISVRQVADIC 240 (402)
T ss_pred CCceEEEEEecch-------------------heecCCceeEEEEEecCCcc--eeeeeEEEeEeeceEE
Confidence 4677777777753 99999999999999988756 7888998888777654
No 17
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=92.65 E-value=0.8 Score=41.00 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=63.6
Q ss_pred eecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEc-CCCeEEEEEeEEEecCCcccCCCc-e-EEEEEeCCCCCC
Q 022181 41 LFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFD-RGNFYDFTSLVRELDVPGEIYERK-T-YPFEFSTVEMPY 117 (301)
Q Consensus 41 iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~-~~~~~~~~~~~~~l~~~G~L~~g~-~-~pF~F~l~~~~~ 117 (301)
.|+||+.|.|.|.|.--. ..-..+-|.++++-+-....+ +....+-.-..-.|...=++.+|. + |||+|.+|.+.|
T Consensus 43 ~~~PG~~v~g~vhv~GG~-~AQdI~~I~LkL~t~Y~~evdDe~~~~~~t~~n~rl~~~fTIqpgEe~~fpf~l~lP~~tP 121 (270)
T COG4326 43 VLYPGQSVKGIVHVYGGA-TAQDIDNIELKLCTCYIAEVDDERGQQQGTLANWRLPYAFTIQPGEERNFPFELSLPWNTP 121 (270)
T ss_pred cccCCceEEEEEEEecCc-hHhhhhhhhhhheeeEEEEeccccceeEEEEEEEeecceEEecCCceEeccEEEecCCCCc
Confidence 899999999999997421 123567777777644333323 222222222222333333677775 4 999999998888
Q ss_pred CeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEE
Q 022181 118 ETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVR 152 (301)
Q Consensus 118 eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~ 152 (301)
=|+ |++.-.|+--+|-....|-+-+--++|.
T Consensus 122 vT~----G~~~V~v~TgLDI~~aidp~D~D~l~Vr 152 (270)
T COG4326 122 VTI----GDAKVWVETGLDIALAIDPTDKDILTVR 152 (270)
T ss_pred eee----cceeEEEEeccchhccCCCcccceEEEe
Confidence 775 4555555555555554455555555564
No 18
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=88.03 E-value=6.9 Score=38.73 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=61.1
Q ss_pred eeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCC------C--e--EEEEEeEEEecCCcccCCCceEEE
Q 022181 39 VPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRG------N--F--YDFTSLVRELDVPGEIYERKTYPF 108 (301)
Q Consensus 39 ~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~------~--~--~~~~~~~~~l~~~G~L~~g~~~pF 108 (301)
-|.|+-||+|.|.+.++... .++.-++.+.++ ..|+....- + + ........+.+ +..-..-+|
T Consensus 312 K~~yrlGE~I~g~idf~~~~--~~~c~~v~~~LE-s~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~~~~~~f 384 (415)
T PF08737_consen 312 KPAYRLGEDIVGTIDFNDAS--TIPCYQVSASLE-SEETVNPSYAVRSSAKINRVTRKVHAEHHEIC----LDSRSRTSF 384 (415)
T ss_pred CCCcccCCeEEEEEEcCCCC--cceeEEEEEEEE-EEEEeCchhcccccccccccEEEEEEEEeeee----cCCcceEEE
Confidence 46899999999999998764 477888888887 445542111 0 0 11111111111 112113679
Q ss_pred EEeCCCCCCCeeEEeeeEEEEEEEEEEE
Q 022181 109 EFSTVEMPYETYNGVNVRLRYVLKVTVS 136 (301)
Q Consensus 109 ~F~l~~~~~eSy~G~~~~irY~vkv~i~ 136 (301)
.+..|...+++|.-..+.++|.|+.+.-
T Consensus 385 ~l~IP~~~tp~F~T~~v~lkW~LrfeFv 412 (415)
T PF08737_consen 385 SLPIPLSATPQFQTSGVSLKWRLRFEFV 412 (415)
T ss_pred EeeCCCCCCCceEeCCEEEEEEEEEEEE
Confidence 9999999999999999999999998754
No 19
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=87.85 E-value=10 Score=28.96 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred eeeecCCCcEEEEEEEEeCCC--cEEEEeEEEEEEEEEEEEEEcCCCeEEEEEeEEEecCCcccCCCceEEEEEeCCCCC
Q 022181 39 VPLFQSQENISGKISIEPVLG--KKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMP 116 (301)
Q Consensus 39 ~~iY~~Ge~VsG~V~i~~~~~--k~~~h~gI~i~~~G~~e~~~~~~~~~~~~~~~~~l~~~G~L~~g~~~pF~F~l~~~~ 116 (301)
-|+|+|||+|.-++.+...++ ++..-.-+.+.+. ..+++.. ..... -.....-.|.++|++|+..
T Consensus 8 r~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~------dp~g~~v--~~~~~-----~~~~~~G~~~~~~~lp~~~ 74 (99)
T PF01835_consen 8 RPIYRPGETVHFRAIVRDLDNDFKPPANSPVTVTIK------DPSGNEV--FRWSV-----NTTNENGIFSGSFQLPDDA 74 (99)
T ss_dssp SSEE-TTSEEEEEEEEEEECTTCSCESSEEEEEEEE------ETTSEEE--EEEEE-----EETTCTTEEEEEEE--SS-
T ss_pred ccCcCCCCEEEEEEEEeccccccccccCCceEEEEE------CCCCCEE--EEEEe-----eeeCCCCEEEEEEECCCCC
Confidence 469999999999999876542 2333344444443 2233211 11111 0122333478889998765
Q ss_pred CCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEE
Q 022181 117 YETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVV 151 (301)
Q Consensus 117 ~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V 151 (301)
.. | .|.|+|..+.. .....+..|-|
T Consensus 75 ~~---G-----~y~i~~~~~~~--~~~~~~~~F~V 99 (99)
T PF01835_consen 75 PL---G-----TYTIRVKTDDD--GGQSFSKTFQV 99 (99)
T ss_dssp -----E-----EEEEEEEETTT--TCEEEEEEEEE
T ss_pred CC---E-----eEEEEEEEccC--CCCEEEEEEEC
Confidence 43 3 57777776521 24555666655
No 20
>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]
Probab=85.80 E-value=21 Score=34.76 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=69.1
Q ss_pred eecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCC-eEEEEEeEE---EecCCcccCCC-ce-EEEEEeCCC
Q 022181 41 LFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGN-FYDFTSLVR---ELDVPGEIYER-KT-YPFEFSTVE 114 (301)
Q Consensus 41 iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~-~~~~~~~~~---~l~~~G~L~~g-~~-~pF~F~l~~ 114 (301)
.|.+||.+...+.|.+...+ ....+.+.+.=.+...-.... ....-.... .....+.+..+ .. +-.+|.+|.
T Consensus 198 ~~~~ge~i~~~~~i~n~ss~--~~~~~~~~l~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~iP~ 275 (427)
T KOG3780|consen 198 GYVPGETIPVTLEIENKSSR--TIKKVKAKLIQKISYLAFSYGEHTKTKKSEKTLIKSRGSLEVAPRSEDKFEKELRIPP 275 (427)
T ss_pred cCcCCccEEEEEEEecCCCC--cceeeEEEEEEEEEEEeecCCccccceeeeeEEeeeccccccCCCCccccceEEEcCC
Confidence 79999999999999998644 555555555533333211110 001111111 11222334343 34 788888987
Q ss_pred CCCCeeE--EeeeEEEEEEEEEEEecC--CCCceEEEEEEEEeC
Q 022181 115 MPYETYN--GVNVRLRYVLKVTVSRGY--GGSVVEYQDFVVRNY 154 (301)
Q Consensus 115 ~~~eSy~--G~~~~irY~vkv~i~R~~--~~~~~~~~eF~V~~~ 154 (301)
..| |+. ...+++.|.+++.+.-+- ..++..+.++.+...
T Consensus 276 ~~P-s~~~~~~~i~v~y~l~v~~~~~~~~~~~~~l~~pi~igt~ 318 (427)
T KOG3780|consen 276 VPP-SILPDTPIIRVEYELKVTLKTSSLRHSELALELPIIIGTI 318 (427)
T ss_pred CCC-ccCCCCceEEEEEEEEEEEecCcccccceeeeeceEEecc
Confidence 775 766 589999999999998872 347777777777654
No 21
>KOG4469 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.21 E-value=43 Score=30.57 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=91.4
Q ss_pred cCCCce--EEEEEeCCCCCCCeeEEeeeEEEEEEEEEEEecCCC--CceEEEEEEEEeCC------C----CCCCCCCce
Q 022181 100 IYERKT--YPFEFSTVEMPYETYNGVNVRLRYVLKVTVSRGYGG--SVVEYQDFVVRNYT------P----PPSINNSIK 165 (301)
Q Consensus 100 L~~g~~--~pF~F~l~~~~~eSy~G~~~~irY~vkv~i~R~~~~--~~~~~~eF~V~~~~------~----~p~~~~pi~ 165 (301)
|..|.+ |.++=-||-.-|+||.|..++.-|.+..-..|-... -+..-....|..-. + .|+...--.
T Consensus 105 ldpgesksysysevlpiegppsfrgqsvkyvykltigcqrvnspitllrvplrvlvltglqdvrfpqdeavapsspflee 184 (391)
T KOG4469|consen 105 LDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEE 184 (391)
T ss_pred cCCCccccccceeeeeccCCCccCCceeEEEEEEEeeeEecCCcceEEeeceEEEEEecccccccCcccccCCCCCcccc
Confidence 556654 888888998999999999999889888777774421 11222233333210 0 121111111
Q ss_pred eeecc----------------cc--eeEE-----------EEEEeeeeEEcCCcEEEEEEEEEeeeeeeEEEEEEEEEEE
Q 022181 166 MEVGI----------------ED--CLHI-----------EFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRES 216 (301)
Q Consensus 166 ~ev~i----------------~~--~L~i-----------~f~~~k~~y~l~d~i~G~i~f~~s~~~Ik~iel~LiR~Et 216 (301)
-|-|+ +. .||+ .|-+-|+.|.+|+.+.|.+....-.+.--...+.|...|.
T Consensus 185 deggkkdswlaelagerlmaatscrslhlynisdgrgkvgtfgifksvyrlgedvvgtlnlgegtvaclqfsvslqteer 264 (391)
T KOG4469|consen 185 DEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEER 264 (391)
T ss_pred ccCCccchHHHHhhhhhhhhhcccceeeeEeecCCCccceeeehhhhhhhcccceeeeeecCCceEEEEEEEEeechhhh
Confidence 11111 11 2442 2444477789999999998886555555556666666554
Q ss_pred ecC--------CCceeEEeeEEEEEEEEeCCCCCC-ceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEE
Q 022181 217 TGS--------GANTHVETETLAKFELMDGAPVRG-ESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVD 280 (301)
Q Consensus 217 ~~~--------~~~~~~e~~~i~~~qi~dG~~~rg-~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~ 280 (301)
... +.-.....-+.++-| ..|-. ..--|.|.+ |+..||-+. ..+.|+++.|++..+.
T Consensus 265 vqpeyqrrrgaggvpsvshvtharhq----esclhttrtsfslpi-plsstpgfc--taivslkwrlhfefvt 330 (391)
T KOG4469|consen 265 VQPEYQRRRGAGGVPSVSHVTHARHQ----ESCLHTTRTSFSLPI-PLSSTPGFC--TAIVSLKWRLHFEFVT 330 (391)
T ss_pred cChHHHhhccCCCCCcchhhhhhhhh----hhhhhcccceeeecc-ccCCCCccE--eeEeeeeeEEEEEEEe
Confidence 321 111111111111111 01111 111123333 556777762 4667899999887764
No 22
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=56.59 E-value=85 Score=36.63 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=69.7
Q ss_pred eeeecCCCcEEEEEEEEeCCCc-EEEEeEEEEEEEEEEEEEEcCCCeEEEEEeEEEecCCcccCCCce-EEEEEeCCCCC
Q 022181 39 VPLFQSQENISGKISIEPVLGK-KVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKT-YPFEFSTVEMP 116 (301)
Q Consensus 39 ~~iY~~Ge~VsG~V~i~~~~~k-~~~h~gI~i~~~G~~e~~~~~~~~~~~~~~~~~l~~~G~L~~g~~-~pF~F~l~~~~ 116 (301)
.++|+|||+|...+.++-.+++ .+.-.-+++.+. ...| ..+-.....+. ..- +.|+|++|+..
T Consensus 402 RglYRpGE~v~~~~~~R~~~~~~a~~~~p~~l~v~------~PdG--~~~~~~~~~~~-------~~G~~~~~~~l~~na 466 (1621)
T COG2373 402 RGLYRPGETVHVNALLRDFDGKTALDNQPLKLRVL------DPDG--SVLRTLTITLD-------EEGLYELSFPLPENA 466 (1621)
T ss_pred cccCCCCceeeeeeeehhhcccccccCCCeEEEEE------CCCC--cEEEEEEEecc-------ccCceEEeeeCCCCC
Confidence 4599999999999999977655 233333333332 1222 11111111111 122 78999998765
Q ss_pred CCeeEEeeeEEEEEEEEEEEecCCCCceEEEEEEEEeCCCCCCCCCCceeeecccceeEEEEEEeeeeEEcCCcEEEEEE
Q 022181 117 YETYNGVNVRLRYVLKVTVSRGYGGSVVEYQDFVVRNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIY 196 (301)
Q Consensus 117 ~eSy~G~~~~irY~vkv~i~R~~~~~~~~~~eF~V~~~~~~p~~~~pi~~ev~i~~~L~i~f~~~k~~y~l~d~i~G~i~ 196 (301)
+.. .|.|++...-. +...+..|-|...- |-+|+ ++...++..+..++.+.++|.
T Consensus 467 ~tG--------~w~l~~~~~~~---~~~~s~~f~V~df~-------p~r~~--------i~l~~~k~~~~~g~~v~~~v~ 520 (1621)
T COG2373 467 LTG--------GYTLELYTGGK---SAVISMSFRVEDFI-------PDRFK--------INLTLDKTEWVPGKDVKIKVD 520 (1621)
T ss_pred Ccc--------eEEEEEEeCCc---cceeeeeEEhhHhC-------CceEE--------EecccccccccCCCcEEEEEE
Confidence 543 46665554211 15566677775321 11233 333455666777777777777
Q ss_pred EE-EeeeeeeEEEEE
Q 022181 197 FL-LVRIKIKNMDLE 210 (301)
Q Consensus 197 f~-~s~~~Ik~iel~ 210 (301)
.. +.-.|...-.++
T Consensus 521 ~~yL~GaPa~g~~~~ 535 (1621)
T COG2373 521 LRYLYGAPAAGLTVQ 535 (1621)
T ss_pred EEecCCCcccCceee
Confidence 74 333444443333
No 23
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=44.84 E-value=1.6e+02 Score=23.41 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=11.5
Q ss_pred cCCCcEEEEEEEEeCC
Q 022181 43 QSQENISGKISIEPVL 58 (301)
Q Consensus 43 ~~Ge~VsG~V~i~~~~ 58 (301)
.++..+.|+|.|.+-.
T Consensus 16 ~~~~~L~G~V~V~Nla 31 (113)
T PF03370_consen 16 PDQQSLSGTVRVRNLA 31 (113)
T ss_dssp --SSEEEEEEEEE-SS
T ss_pred CCCCEEEEEEEEEcCC
Confidence 4589999999999753
No 24
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=37.11 E-value=3e+02 Score=24.43 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=58.1
Q ss_pred EEEEEEEEEecCC------Cc-----eeEEeeEEEEEEEEeCCC--CCC-ceeeEEEeeCCCcCCCccc-cccceEEEEE
Q 022181 208 DLEIRRRESTGSG------AN-----THVETETLAKFELMDGAP--VRG-ESIPIRLFLSPYELTPTHR-NINNKFSVKY 272 (301)
Q Consensus 208 el~LiR~Et~~~~------~~-----~~~e~~~i~~~qi~dG~~--~rg-~~IPirl~l~~~~ltPt~~-~~~~~fsV~y 272 (301)
.++|++..++.-+ .. =....++++++++..... .+| -.-||-..+ |-.|++|+. ..+..-+|+|
T Consensus 2 ~l~l~~~v~~~KPf~~~~~~~~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~Li-PG~LPaS~~lgs~~l~~I~Y 80 (191)
T PF13002_consen 2 TLSLIQKVTYKKPFVPPSPVISHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSYLI-PGHLPASMDLGSTPLVSIKY 80 (191)
T ss_pred eEEEEEEEeecCCCCCCChhhCcChhHhccceeeeecceecCccccCCCcccCCeeEEC-CCCCccccccCCCCcEEEEE
Confidence 5788888877543 11 146678899999887543 223 346776555 668888874 1246689999
Q ss_pred EEEEEEEECC-------CcE--EEEeeEEEEEEec
Q 022181 273 YLNLVLVDEE-------DRR--YFKQQEITIYRLQ 298 (301)
Q Consensus 273 ~lnlvli~~~-------~~~--y~k~~~I~L~R~~ 298 (301)
+|.-++...+ ++. +--+.+|.+=|.-
T Consensus 81 el~A~a~~~~~~~~~~~~~~~~~~~~~pl~V~Rsi 115 (191)
T PF13002_consen 81 ELKAEATYKDPRRGSSSSKPRVLKLKRPLPVKRSI 115 (191)
T ss_pred EEEEEEEEccCccccCCCcceeEEEeeeEEEEEec
Confidence 9999998833 222 3334577777753
No 25
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=33.98 E-value=1.2e+02 Score=24.77 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=26.6
Q ss_pred EeeeecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCCeEEEE
Q 022181 38 MVPLFQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFT 88 (301)
Q Consensus 38 ~~~iY~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~~~~~~ 88 (301)
.+|-|.+||+|...|.|. +|.+-..| .++|.+-..-.++-...|+
T Consensus 17 ~iP~f~~GDtvrv~vki~--Eg~keR~Q----~FeGvVia~r~~G~~~tft 61 (115)
T COG0335 17 DIPSFRPGDTVRVHVKIV--EGSKERVQ----AFEGVVIARRGRGISETFT 61 (115)
T ss_pred hCCCCCCCCEEEEEEEEE--eCCeEEEe----eeeEEEEEECCCCccceEE
Confidence 389999999999666554 44444444 2455554443444444443
No 26
>KOG4785 consensus Transcription factor CBF, beta subunit [Transcription]
Probab=31.19 E-value=63 Score=27.50 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=23.3
Q ss_pred CcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEE
Q 022181 46 ENISGKISIEPVLGKKVEHNGVKIELLGQIEMY 78 (301)
Q Consensus 46 e~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~ 78 (301)
+.-.|+|.|.. ++-.+||.+.|.|.+++-
T Consensus 84 ~re~gkv~~k~----p~i~NGvcV~~~GwidlE 112 (177)
T KOG4785|consen 84 EREAGKVYLKA----PMILNGVCVIWKGWIDLE 112 (177)
T ss_pred hhhcCceeccc----ceEeeeeEEEEEeeechh
Confidence 44468888853 689999999999999764
No 27
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=26.47 E-value=1.4e+02 Score=27.04 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=47.4
Q ss_pred EeeeeEEcCCcEEEEEEEE--EeeeeeeEEEEEEEEEEEecCCCceeEEeeEEEEEEEEeC-CCCCCc--eeeEEEee
Q 022181 180 YNKSKYHLKDVIIGKIYFL--LVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDG-APVRGE--SIPIRLFL 252 (301)
Q Consensus 180 ~~k~~y~l~d~i~G~i~f~--~s~~~Ik~iel~LiR~Et~~~~~~~~~e~~~i~~~qi~dG-~~~rg~--~IPirl~l 252 (301)
+.+..+-+|+.+.|.|++. .+.-.|..|+++|.-.=....++...++.-+++|+.+-.- ..-+|| .+||.+-|
T Consensus 39 L~~~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdDe~~~~~~t~~n~rl~~~fTIqpgEe~~fpf~l~l 116 (270)
T COG4326 39 LQQEVLYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDDERGQQQGTLANWRLPYAFTIQPGEERNFPFELSL 116 (270)
T ss_pred hhhccccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEeccccceeEEEEEEEeecceEEecCCceEeccEEEec
Confidence 3466778999999999996 4445999999999754333334444445557777765421 122344 46777766
No 28
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=25.07 E-value=2.7e+02 Score=20.12 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=31.0
Q ss_pred cCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEEcCCCeEEEEEeEEEecCCcccCCCce--EEEEEeCCCCCCC
Q 022181 43 QSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKT--YPFEFSTVEMPYE 118 (301)
Q Consensus 43 ~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~~~~~~~~~~~~~~~l~~~G~L~~g~~--~pF~F~l~~~~~e 118 (301)
.+|+.++=++.|++..+. ....+.+.+.. ..+..... ....+ ..|+.|.+ +.|....|+...+
T Consensus 2 ~~G~~~~~~~tv~N~g~~--~~~~v~~~l~~------P~GW~~~~--~~~~~---~~l~pG~s~~~~~~V~vp~~a~~ 66 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTA--PLTNVSLSLSL------PEGWTVSA--SPASV---PSLPPGESVTVTFTVTVPADAAP 66 (78)
T ss_dssp -TTEEEEEEEEEE--SSS---BSS-EEEEE--------TTSE-----EEEEE-----B-TTSEEEEEEEEEE-TT--S
T ss_pred CCCCEEEEEEEEEECCCC--ceeeEEEEEeC------CCCccccC--Ccccc---ccCCCCCEEEEEEEEECCCCCCC
Confidence 478999999999987533 45667777653 23322111 11111 15888866 8888888876554
No 29
>PF07472 PA-IIL: Fucose-binding lectin II (PA-IIL); InterPro: IPR010907 This entry represents calcium-mediated lectins. Structures have been determined for both fucose-binding lectin II (PA-IIL) [] and mannose-specific lectin II (RS-IIL) []. These proteins have homologous structures, their monomers consisting of a 9-stranded beta sandwich with Greek-key topology. Each monomer contains two calcium ions that mediate an exceptionally high binding affinity to the monosaccharide ligand in a recognition mode unique among carbohydrate-protein interactions. In Pseudomonas aeruginosa, PA-IIL contributes to the pathogenic virulence of the bacterium, functioning as a tetramer when binding fucose []. In the plant pathogen Ralstonia solanacearum (Pseudomonas solanacearum), RS-IIL recognises fucose, but displays much higher affinity to mannose and fructose, which is opposite to the preference of PA-IIL. ; PDB: 2WRA_A 2WR9_C 1OUX_C 2VUC_B 1GZT_C 2BOJ_D 2JDM_D 2JDH_D 1W8F_D 1UZV_A ....
Probab=24.78 E-value=2.5e+02 Score=22.60 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCCceeEEeecCCCceEEeeeecCCCcEEEEEEEEeC-CCcEEEEeEEEEEEEE
Q 022181 10 PACNISITFADGKNRKQVPLKKENGQTIMVPLFQSQENISGKISIEPV-LGKKVEHNGVKIELLG 73 (301)
Q Consensus 10 ~~~~i~i~l~~~~~~~~~~~~~~~~~~~~~~iY~~Ge~VsG~V~i~~~-~~k~~~h~gI~i~~~G 73 (301)
..=+|++-.|+.+. ....-...++.....-+|.+| +|+|.|+.. +||+.+.+.-...+-|
T Consensus 19 ~~Qti~v~idd~~~-~t~~G~g~~~~~~~t~~l~Sg---~Gkv~i~v~~ngk~s~l~~~q~~l~~ 79 (107)
T PF07472_consen 19 AQQTIKVYIDDSPV-ATFTGSGTNDNNIGTKVLNSG---SGKVRIEVTANGKPSKLRSSQNTLDG 79 (107)
T ss_dssp CEEEEEEEETTECC-EEEEEEEEEEEEEEEEEEE-T---TSEEEEEEEETTEE-EEEEEEEEETT
T ss_pred CceeEEEEECCcee-EEEEecccCCCceeeEEEecC---CCeEEEEEEeCCccccceeeeeeccC
Confidence 44567777776654 222222212222223358888 899988864 6777776666555544
No 30
>CHL00084 rpl19 ribosomal protein L19
Probab=22.74 E-value=1.4e+02 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=24.7
Q ss_pred EEeeeecCCCcEEEEEEEEeCCCcEEE-EeEEEEEEEE
Q 022181 37 IMVPLFQSQENISGKISIEPVLGKKVE-HNGVKIELLG 73 (301)
Q Consensus 37 ~~~~iY~~Ge~VsG~V~i~~~~~k~~~-h~gI~i~~~G 73 (301)
..+|-|.+||+|.-.+.|.-.+-.+++ ..|+.|...|
T Consensus 18 ~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~ 55 (117)
T CHL00084 18 KNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKN 55 (117)
T ss_pred cCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeC
Confidence 458899999999888877532211333 6777776654
No 31
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=22.41 E-value=2.9e+02 Score=21.57 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCCCCceeeEEEeeCCCcCCCccccccceEEEEEEEEEEEEECCCcEEE
Q 022181 238 GAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYF 287 (301)
Q Consensus 238 G~~~rg~~IPirl~l~~~~ltPt~~~~~~~fsV~y~lnlvli~~~~~~y~ 287 (301)
+...+|+..=+.+-+..+...|. +.|.+++.+.|++|+..+
T Consensus 72 CPl~~G~~~~~~~~~~v~~~~P~---------~~~~v~~~l~d~~~~~i~ 112 (118)
T smart00737 72 CPIEKGETVNYTNSLTVPGIFPP---------GKYTVKWELTDEDGEELA 112 (118)
T ss_pred CCCCCCeeEEEEEeeEccccCCC---------eEEEEEEEEEcCCCCEEE
Confidence 44445776544433333445555 799999999999988654
No 32
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=22.09 E-value=3.2e+02 Score=20.52 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=14.6
Q ss_pred EEEEEEEEEecCCCCceEEEEEEE
Q 022181 128 RYVLKVTVSRGYGGSVVEYQDFVV 151 (301)
Q Consensus 128 rY~vkv~i~R~~~~~~~~~~eF~V 151 (301)
+|.++|+++|-- .-++.++...|
T Consensus 43 ~Y~v~a~~~~dG-~~~t~~~~V~v 65 (75)
T TIGR03000 43 EYTVTAEYDRDG-RILTRTRTVVV 65 (75)
T ss_pred EEEEEEEEecCC-cEEEEEEEEEE
Confidence 377888888765 35555555554
No 33
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=20.71 E-value=2.2e+02 Score=29.23 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=44.6
Q ss_pred cCCCCCceEEEEEecCCC-----CceeEEeecCCCce------EEeeeecCCCcEE-EEEEEEeCCCcEEEEeEEEEEEE
Q 022181 5 IGAFKPACNISITFADGK-----NRKQVPLKKENGQT------IMVPLFQSQENIS-GKISIEPVLGKKVEHNGVKIELL 72 (301)
Q Consensus 5 ~~~~~~~~~i~i~l~~~~-----~~~~~~~~~~~~~~------~~~~iY~~Ge~Vs-G~V~i~~~~~k~~~h~gI~i~~~ 72 (301)
+|.-.-.+.|||.|-.+. +|++..++..|... .+.+||-.|..|. |.+ +.++.+--++.+|++..|+
T Consensus 452 lGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlGK~~I~vng~~l~~gq~-~~L~~nclveIrg~~FiF~ 530 (547)
T KOG2293|consen 452 LGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLGKRSILVNGGELDRGQK-VILKNNCLVEIRGLRFIFE 530 (547)
T ss_pred eeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCcceeEEeCCccccCCce-EEeccCcEEEEccceEEEe
Confidence 455556788888886543 67777777775433 3677888877664 544 3344444789999988876
No 34
>PF12389 Peptidase_M73: Camelysin metallo-endopeptidase; InterPro: IPR022121 Camelysin is a novel surface metallopeptidase from Bacillus cereus []. Camelysin prefers cleavage sites in front of aliphatic and hydrophilic amino acid residues (-OH, -SO3H, amido group), and requires zinc for activity [, ].
Probab=20.46 E-value=6.2e+02 Score=22.61 Aligned_cols=91 Identities=9% Similarity=0.157 Sum_probs=54.1
Q ss_pred ecCCCcEEEEEEEEeCCCcEEEEeEEEEEEEEEEEEEE-cCC-----C--eEEEEEe-----------------------
Q 022181 42 FQSQENISGKISIEPVLGKKVEHNGVKIELLGQIEMYF-DRG-----N--FYDFTSL----------------------- 90 (301)
Q Consensus 42 Y~~Ge~VsG~V~i~~~~~k~~~h~gI~i~~~G~~e~~~-~~~-----~--~~~~~~~----------------------- 90 (301)
..|||++.-.+.|.+.. .+..+.|.+...-.+.-.- +.. + ..+|+..
T Consensus 61 lkPGD~v~k~f~l~N~G--tldi~~v~l~~~y~v~d~~gd~~~~df~k~i~v~fl~n~dk~~~~~~~ttL~eL~~~~~~~ 138 (199)
T PF12389_consen 61 LKPGDTVEKEFTLKNSG--TLDIKDVLLKTDYTVTDAKGDNTAEDFGKHIKVQFLWNWDKTSEPIYETTLAELKSTTPDI 138 (199)
T ss_pred CCCCCeEEEEEEEEeCC--eeeeeeEEEEEEEEEEecCCCCchhhhhhcEEEEEEEcCCCCccccccCCHHHHhcCCccc
Confidence 67999999999999986 6788888877754432210 000 0 1222221
Q ss_pred -EEEe-----cCCcccCCCce--EEEEEeCCC--CCCCeeEEeeeEEEEEEEEE
Q 022181 91 -VREL-----DVPGEIYERKT--YPFEFSTVE--MPYETYNGVNVRLRYVLKVT 134 (301)
Q Consensus 91 -~~~l-----~~~G~L~~g~~--~pF~F~l~~--~~~eSy~G~~~~irY~vkv~ 134 (301)
...+ ...|-|++|.. |-..|..++ .---.|.|...++.+...+.
T Consensus 139 ~~~d~~~~~~~e~~gl~aG~~d~l~V~f~F~Dn~~dqN~FQGD~l~L~wtF~a~ 192 (199)
T PF12389_consen 139 VANDIFAPAWGEKGGLAAGSSDDLWVKFEFVDNGEDQNQFQGDSLELTWTFNAN 192 (199)
T ss_pred cccchhcccccccCCCCCCCCcEEEEEEEEeeCCCccceecCcEEEEEEEEeee
Confidence 0011 12345777754 555555443 34477999988888877553
Done!