Query 022182
Match_columns 301
No_of_seqs 291 out of 3173
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.4E-48 7.4E-53 352.1 18.0 274 8-300 2-300 (531)
2 COG2072 TrkA Predicted flavopr 100.0 1.4E-39 3E-44 291.2 25.1 210 5-227 6-216 (443)
3 PLN02172 flavin-containing mon 100.0 1.3E-36 2.8E-41 273.1 24.3 202 6-219 9-237 (461)
4 KOG1399 Flavin-containing mono 100.0 1.9E-36 4.1E-41 267.4 20.2 201 6-217 5-217 (448)
5 PF13738 Pyr_redox_3: Pyridine 100.0 1.4E-33 3E-38 229.3 13.3 191 11-222 1-203 (203)
6 TIGR01292 TRX_reduct thioredox 99.9 3.4E-24 7.4E-29 184.4 19.9 175 8-220 1-175 (300)
7 COG1249 Lpd Pyruvate/2-oxoglut 99.9 5.9E-26 1.3E-30 201.7 9.0 276 6-299 3-295 (454)
8 COG0492 TrxB Thioredoxin reduc 99.9 6.7E-24 1.5E-28 180.0 18.0 174 6-219 2-176 (305)
9 PRK10262 thioredoxin reductase 99.9 1.3E-23 2.7E-28 182.5 19.2 177 5-220 4-180 (321)
10 PRK15317 alkyl hydroperoxide r 99.9 2.1E-23 4.5E-28 191.8 20.5 176 5-219 209-384 (517)
11 KOG0405 Pyridine nucleotide-di 99.9 6.6E-24 1.4E-28 175.5 12.1 278 4-301 17-312 (478)
12 TIGR03143 AhpF_homolog putativ 99.9 1.8E-22 4E-27 186.7 19.8 174 7-220 4-177 (555)
13 PRK05249 soluble pyridine nucl 99.9 5.5E-23 1.2E-27 187.1 14.9 213 6-243 4-231 (461)
14 TIGR03140 AhpF alkyl hydropero 99.9 5.4E-22 1.2E-26 182.2 20.5 176 5-219 210-385 (515)
15 PLN02507 glutathione reductase 99.9 8.2E-24 1.8E-28 193.1 7.6 212 7-245 25-261 (499)
16 TIGR01421 gluta_reduc_1 glutat 99.9 6.4E-23 1.4E-27 185.4 13.0 209 7-248 2-227 (450)
17 PRK14694 putative mercuric red 99.9 1.4E-22 2.9E-27 184.5 14.6 215 5-244 4-234 (468)
18 PF13434 K_oxygenase: L-lysine 99.9 5.4E-23 1.2E-27 178.3 11.4 204 7-228 2-233 (341)
19 PRK08010 pyridine nucleotide-d 99.9 1.8E-22 4E-27 182.5 15.1 205 7-244 3-215 (441)
20 PRK06116 glutathione reductase 99.9 1.8E-23 3.9E-28 189.6 7.9 204 7-244 4-224 (450)
21 PRK14727 putative mercuric red 99.9 1.7E-22 3.8E-27 184.1 13.8 223 1-244 10-244 (479)
22 PRK06467 dihydrolipoamide dehy 99.9 3.1E-22 6.7E-27 182.0 15.0 208 7-241 4-228 (471)
23 PRK06416 dihydrolipoamide dehy 99.9 2.6E-22 5.5E-27 182.7 14.3 206 6-240 3-225 (462)
24 PRK06370 mercuric reductase; V 99.9 1.8E-22 4E-27 183.5 13.2 207 7-244 5-228 (463)
25 PRK07251 pyridine nucleotide-d 99.9 1E-21 2.2E-26 177.6 15.8 198 7-243 3-213 (438)
26 TIGR02053 MerA mercuric reduct 99.9 1.9E-22 4.2E-27 183.5 11.0 211 8-247 1-226 (463)
27 PRK13748 putative mercuric red 99.9 7.4E-22 1.6E-26 183.9 14.6 214 6-244 97-326 (561)
28 PRK05976 dihydrolipoamide dehy 99.9 1.1E-21 2.4E-26 178.8 14.4 217 6-246 3-239 (472)
29 PRK06292 dihydrolipoamide dehy 99.9 4E-21 8.7E-26 174.8 17.9 215 7-245 3-226 (460)
30 TIGR01424 gluta_reduc_2 glutat 99.9 8.4E-22 1.8E-26 178.3 12.5 200 7-238 2-217 (446)
31 PTZ00052 thioredoxin reductase 99.9 6.1E-22 1.3E-26 181.0 10.4 218 7-247 5-241 (499)
32 PRK07818 dihydrolipoamide dehy 99.9 4.6E-21 1E-25 174.5 15.5 218 7-246 4-231 (466)
33 PTZ00058 glutathione reductase 99.9 7.4E-22 1.6E-26 181.2 10.1 212 6-245 47-295 (561)
34 PRK06115 dihydrolipoamide dehy 99.9 8.9E-21 1.9E-25 172.4 16.2 214 7-246 3-233 (466)
35 TIGR01438 TGR thioredoxin and 99.9 5.5E-21 1.2E-25 173.9 14.6 215 7-248 2-240 (484)
36 PLN02546 glutathione reductase 99.9 2E-21 4.3E-26 178.5 11.7 208 7-246 79-311 (558)
37 PRK12831 putative oxidoreducta 99.9 5E-21 1.1E-25 173.3 13.5 173 5-228 138-323 (464)
38 KOG0404 Thioredoxin reductase 99.9 1.3E-20 2.8E-25 147.1 13.7 175 8-220 9-191 (322)
39 PRK12779 putative bifunctional 99.8 1.6E-20 3.5E-25 181.4 15.8 172 6-230 305-491 (944)
40 PRK06912 acoL dihydrolipoamide 99.8 8.3E-21 1.8E-25 172.4 13.0 210 9-244 2-227 (458)
41 TIGR01350 lipoamide_DH dihydro 99.8 2.4E-20 5.2E-25 169.8 13.8 203 7-238 1-221 (461)
42 TIGR02374 nitri_red_nirB nitri 99.8 2.1E-21 4.5E-26 185.8 7.0 189 10-244 1-198 (785)
43 COG1252 Ndh NADH dehydrogenase 99.8 9E-22 2E-26 171.0 3.6 208 7-254 3-235 (405)
44 PRK13512 coenzyme A disulfide 99.8 5.9E-20 1.3E-24 165.8 15.2 193 8-243 2-204 (438)
45 PRK06327 dihydrolipoamide dehy 99.8 6.4E-20 1.4E-24 167.2 15.5 213 7-244 4-240 (475)
46 PTZ00153 lipoamide dehydrogena 99.8 2.3E-20 5E-25 173.7 12.7 213 6-237 115-362 (659)
47 PRK09564 coenzyme A disulfide 99.8 5.3E-20 1.2E-24 166.9 14.9 189 8-238 1-201 (444)
48 PRK07846 mycothione reductase; 99.8 2.1E-20 4.7E-25 169.0 12.2 205 7-235 1-214 (451)
49 PRK07845 flavoprotein disulfid 99.8 7E-20 1.5E-24 166.5 14.7 215 8-244 2-234 (466)
50 TIGR01423 trypano_reduc trypan 99.8 1.7E-20 3.7E-25 170.4 10.2 226 6-248 2-251 (486)
51 TIGR01316 gltA glutamate synth 99.8 6.6E-20 1.4E-24 165.7 13.8 161 6-220 132-306 (449)
52 PRK09754 phenylpropionate diox 99.8 4.4E-20 9.5E-25 164.7 11.3 183 8-236 4-194 (396)
53 PRK14989 nitrite reductase sub 99.8 5.8E-20 1.3E-24 176.0 12.6 195 7-248 3-207 (847)
54 PRK04965 NADH:flavorubredoxin 99.8 1.1E-19 2.4E-24 161.3 13.4 170 8-226 3-180 (377)
55 PRK09853 putative selenate red 99.8 3.2E-19 6.9E-24 170.5 16.3 173 6-234 538-718 (1019)
56 KOG1335 Dihydrolipoamide dehyd 99.8 9.6E-20 2.1E-24 152.8 10.0 229 6-252 38-276 (506)
57 PRK12778 putative bifunctional 99.8 2.8E-19 6.1E-24 171.2 13.9 170 6-228 430-613 (752)
58 COG3634 AhpF Alkyl hydroperoxi 99.8 3.4E-19 7.4E-24 147.8 12.4 212 5-259 209-421 (520)
59 PTZ00318 NADH dehydrogenase-li 99.8 1.5E-20 3.3E-25 168.9 4.3 206 6-248 9-248 (424)
60 PRK11749 dihydropyrimidine deh 99.8 4.9E-19 1.1E-23 160.8 12.7 168 6-227 139-315 (457)
61 KOG4716 Thioredoxin reductase 99.8 1.8E-18 3.8E-23 143.1 14.4 225 5-248 17-258 (503)
62 PRK12814 putative NADPH-depend 99.8 1.2E-18 2.5E-23 164.0 13.4 174 6-233 192-371 (652)
63 TIGR03452 mycothione_red mycot 99.8 1.1E-18 2.3E-23 158.1 12.2 204 7-234 2-216 (452)
64 PRK12775 putative trifunctiona 99.8 2.4E-18 5.1E-23 167.9 15.0 171 6-228 429-614 (1006)
65 PRK12770 putative glutamate sy 99.8 3.6E-18 7.8E-23 150.1 14.5 175 5-220 16-207 (352)
66 PLN02852 ferredoxin-NADP+ redu 99.8 3.6E-18 7.7E-23 153.8 14.3 163 6-221 25-222 (491)
67 TIGR03315 Se_ygfK putative sel 99.8 4.5E-18 9.6E-23 163.4 14.7 173 6-234 536-716 (1012)
68 PRK12769 putative oxidoreducta 99.7 2.6E-17 5.7E-22 155.4 15.1 171 6-230 326-513 (654)
69 TIGR01318 gltD_gamma_fam gluta 99.7 1.9E-17 4.1E-22 150.3 13.0 171 6-230 140-327 (467)
70 COG3486 IucD Lysine/ornithine 99.7 1.5E-16 3.2E-21 135.4 15.4 199 6-229 4-233 (436)
71 PRK12810 gltD glutamate syntha 99.7 2.7E-17 5.8E-22 149.8 11.3 159 6-218 142-314 (471)
72 TIGR03169 Nterm_to_SelD pyridi 99.7 2.9E-17 6.3E-22 145.2 9.8 182 9-240 1-203 (364)
73 PRK12809 putative oxidoreducta 99.7 2E-16 4.3E-21 148.9 15.3 171 6-230 309-496 (639)
74 TIGR01372 soxA sarcosine oxida 99.7 4.5E-16 9.8E-21 152.6 17.3 176 7-219 163-351 (985)
75 COG1251 NirB NAD(P)H-nitrite r 99.7 1E-16 2.3E-21 145.2 11.4 207 7-259 3-218 (793)
76 KOG1336 Monodehydroascorbate/f 99.7 7.5E-17 1.6E-21 139.8 9.1 201 7-255 74-282 (478)
77 TIGR01317 GOGAT_sm_gam glutama 99.7 5.4E-16 1.2E-20 141.4 13.4 160 6-219 142-317 (485)
78 PRK13984 putative oxidoreducta 99.7 5.7E-16 1.2E-20 145.4 12.9 170 6-229 282-468 (604)
79 PRK09897 hypothetical protein; 99.7 6.2E-15 1.3E-19 134.5 18.0 189 8-219 2-245 (534)
80 PRK06567 putative bifunctional 99.6 1.6E-15 3.4E-20 143.8 12.0 40 5-44 381-420 (1028)
81 PRK12771 putative glutamate sy 99.6 3E-15 6.6E-20 139.3 12.7 170 6-230 136-312 (564)
82 PTZ00188 adrenodoxin reductase 99.6 1.2E-14 2.6E-19 129.3 14.6 44 6-49 38-82 (506)
83 COG4529 Uncharacterized protei 99.6 1.6E-13 3.4E-18 120.1 18.8 199 8-225 2-235 (474)
84 KOG1800 Ferredoxin/adrenodoxin 99.6 6.1E-14 1.3E-18 118.1 12.9 171 4-220 17-215 (468)
85 KOG2495 NADH-dehydrogenase (ub 99.6 3.5E-14 7.5E-19 121.5 11.0 214 6-252 54-297 (491)
86 COG0493 GltD NADPH-dependent g 99.5 3E-14 6.5E-19 127.3 10.5 159 6-218 122-295 (457)
87 TIGR03385 CoA_CoA_reduc CoA-di 99.5 3.4E-14 7.4E-19 128.3 10.2 172 21-234 1-185 (427)
88 COG2081 Predicted flavoprotein 99.5 1.2E-13 2.5E-18 118.1 12.2 135 7-153 3-171 (408)
89 PF13454 NAD_binding_9: FAD-NA 99.5 8.5E-13 1.9E-17 102.2 12.9 126 11-147 1-155 (156)
90 PF03486 HI0933_like: HI0933-l 99.5 2.8E-13 6E-18 120.1 10.2 134 8-152 1-169 (409)
91 TIGR02032 GG-red-SF geranylger 99.4 3.8E-12 8.3E-17 109.1 12.5 131 8-149 1-148 (295)
92 PRK04176 ribulose-1,5-biphosph 99.4 1.1E-11 2.4E-16 103.7 12.1 139 6-149 24-173 (257)
93 TIGR02023 BchP-ChlP geranylger 99.3 2.3E-11 5E-16 108.5 14.2 134 8-149 1-155 (388)
94 TIGR00292 thiazole biosynthesi 99.3 1.9E-11 4.1E-16 102.0 12.5 141 6-149 20-170 (254)
95 PRK10157 putative oxidoreducta 99.3 3.6E-11 7.7E-16 108.4 15.0 132 6-149 4-164 (428)
96 PF07992 Pyr_redox_2: Pyridine 99.3 2.2E-13 4.7E-18 110.2 0.0 152 9-193 1-159 (201)
97 KOG0399 Glutamate synthase [Am 99.3 4.6E-12 9.9E-17 119.2 8.5 158 6-211 1784-1949(2142)
98 PRK08244 hypothetical protein; 99.3 6.9E-11 1.5E-15 108.7 16.2 134 7-149 2-159 (493)
99 PRK06847 hypothetical protein; 99.3 7.3E-11 1.6E-15 104.9 15.5 133 7-151 4-165 (375)
100 COG0644 FixC Dehydrogenases (f 99.3 4.3E-11 9.4E-16 106.9 12.8 132 7-149 3-152 (396)
101 COG0446 HcaD Uncharacterized N 99.3 1.4E-11 3E-16 110.7 9.7 184 10-242 1-192 (415)
102 PRK08013 oxidoreductase; Provi 99.3 6.2E-11 1.4E-15 106.2 13.4 132 7-150 3-169 (400)
103 PF01494 FAD_binding_3: FAD bi 99.3 3.8E-11 8.2E-16 105.5 11.9 134 8-149 2-172 (356)
104 PRK06834 hypothetical protein; 99.3 9.2E-11 2E-15 107.3 14.6 131 7-149 3-156 (488)
105 PRK08773 2-octaprenyl-3-methyl 99.3 8E-11 1.7E-15 105.2 14.0 136 1-149 1-169 (392)
106 PRK10015 oxidoreductase; Provi 99.3 9.6E-11 2.1E-15 105.6 14.5 132 6-149 4-164 (429)
107 PRK06183 mhpA 3-(3-hydroxyphen 99.3 2E-10 4.3E-15 106.8 16.7 138 5-150 8-175 (538)
108 PRK07364 2-octaprenyl-6-methox 99.3 9.5E-11 2.1E-15 105.6 14.2 136 6-150 17-182 (415)
109 PRK06184 hypothetical protein; 99.3 1.9E-10 4.1E-15 106.0 16.4 134 7-149 3-168 (502)
110 TIGR01790 carotene-cycl lycope 99.3 1.1E-10 2.3E-15 104.3 14.2 129 9-149 1-141 (388)
111 PLN02463 lycopene beta cyclase 99.3 7.5E-11 1.6E-15 106.2 13.1 126 6-149 27-169 (447)
112 PRK07190 hypothetical protein; 99.2 2E-10 4.4E-15 105.0 15.3 135 1-149 1-165 (487)
113 PRK08132 FAD-dependent oxidore 99.2 3.8E-10 8.1E-15 105.2 16.7 138 4-149 20-185 (547)
114 COG1635 THI4 Ribulose 1,5-bisp 99.2 9.8E-11 2.1E-15 92.1 10.4 136 7-147 30-176 (262)
115 PRK07333 2-octaprenyl-6-methox 99.2 1.7E-10 3.8E-15 103.4 13.6 130 8-149 2-167 (403)
116 PRK07494 2-octaprenyl-6-methox 99.2 1.5E-10 3.3E-15 103.3 13.0 132 6-149 6-167 (388)
117 PRK05714 2-octaprenyl-3-methyl 99.2 8.9E-11 1.9E-15 105.4 11.4 132 7-150 2-169 (405)
118 PRK06126 hypothetical protein; 99.2 5.4E-10 1.2E-14 104.1 17.0 140 3-149 3-188 (545)
119 PRK07045 putative monooxygenas 99.2 2.7E-10 5.8E-15 101.7 14.3 134 6-149 4-165 (388)
120 PRK06185 hypothetical protein; 99.2 3.3E-10 7.2E-15 101.8 14.2 137 5-149 4-169 (407)
121 COG0654 UbiH 2-polyprenyl-6-me 99.2 2.8E-10 6E-15 101.5 13.3 132 7-149 2-162 (387)
122 PRK08020 ubiF 2-octaprenyl-3-m 99.2 2.5E-10 5.4E-15 102.0 12.6 132 6-149 4-169 (391)
123 TIGR01988 Ubi-OHases Ubiquinon 99.2 2.9E-10 6.3E-15 101.3 12.9 129 9-149 1-163 (385)
124 PRK06753 hypothetical protein; 99.2 4.5E-10 9.8E-15 99.7 14.1 127 8-149 1-152 (373)
125 PRK07608 ubiquinone biosynthes 99.2 3.5E-10 7.6E-15 101.0 13.3 130 7-150 5-168 (388)
126 COG3380 Predicted NAD/FAD-depe 99.2 1.4E-10 3E-15 94.0 9.5 123 9-147 3-158 (331)
127 PRK07588 hypothetical protein; 99.2 3.7E-10 7.9E-15 101.0 12.5 131 8-151 1-160 (391)
128 PLN00093 geranylgeranyl diphos 99.2 4.6E-10 1E-14 101.5 13.0 138 6-149 38-199 (450)
129 PRK08163 salicylate hydroxylas 99.2 2.9E-10 6.4E-15 101.7 11.6 134 7-151 4-168 (396)
130 PF05834 Lycopene_cycl: Lycope 99.2 5.9E-10 1.3E-14 98.8 13.3 121 9-148 1-141 (374)
131 PRK11445 putative oxidoreducta 99.2 8.7E-10 1.9E-14 97.0 14.2 132 8-150 2-158 (351)
132 PRK09126 hypothetical protein; 99.2 6.8E-10 1.5E-14 99.3 13.5 131 7-149 3-167 (392)
133 TIGR02028 ChlP geranylgeranyl 99.1 1.3E-09 2.8E-14 97.5 14.8 136 8-149 1-160 (398)
134 TIGR01984 UbiH 2-polyprenyl-6- 99.1 4.8E-10 1E-14 99.9 11.4 129 9-149 1-162 (382)
135 PRK07538 hypothetical protein; 99.1 6.6E-09 1.4E-13 93.6 18.8 136 8-150 1-166 (413)
136 TIGR01989 COQ6 Ubiquinone bios 99.1 8E-10 1.7E-14 100.1 12.7 135 8-150 1-184 (437)
137 PRK06617 2-octaprenyl-6-methox 99.1 9.5E-10 2E-14 97.7 13.0 130 8-150 2-161 (374)
138 PRK08243 4-hydroxybenzoate 3-m 99.1 1.7E-09 3.6E-14 96.7 14.6 132 7-150 2-164 (392)
139 TIGR00275 flavoprotein, HI0933 99.1 8.8E-10 1.9E-14 98.5 12.4 126 11-151 1-162 (400)
140 PRK07236 hypothetical protein; 99.1 2.2E-09 4.7E-14 95.8 14.8 129 6-151 5-156 (386)
141 PF01266 DAO: FAD dependent ox 99.1 4.6E-10 1E-14 98.7 10.3 59 78-149 144-203 (358)
142 PRK06996 hypothetical protein; 99.1 1.4E-09 3.1E-14 97.3 13.4 133 5-147 9-172 (398)
143 PLN02697 lycopene epsilon cycl 99.1 2E-09 4.4E-14 98.6 14.2 130 6-149 107-248 (529)
144 PRK05732 2-octaprenyl-6-methox 99.1 1.4E-09 3.1E-14 97.3 12.8 131 7-149 3-169 (395)
145 PRK08849 2-octaprenyl-3-methyl 99.1 1E-09 2.3E-14 97.8 11.7 132 8-150 4-168 (384)
146 PRK08294 phenol 2-monooxygenas 99.1 7.1E-09 1.5E-13 97.7 17.2 142 6-150 31-211 (634)
147 PRK08850 2-octaprenyl-6-methox 99.1 2.1E-09 4.6E-14 96.5 13.1 131 7-149 4-168 (405)
148 TIGR03219 salicylate_mono sali 99.1 2.9E-09 6.3E-14 95.9 13.4 129 8-150 1-160 (414)
149 PRK06475 salicylate hydroxylas 99.1 3.5E-09 7.7E-14 94.9 13.6 134 8-150 3-168 (400)
150 TIGR01813 flavo_cyto_c flavocy 99.1 8E-09 1.7E-13 93.8 16.0 135 9-150 1-193 (439)
151 PF12831 FAD_oxidored: FAD dep 99.1 1.4E-10 3.1E-15 104.5 4.6 131 9-147 1-148 (428)
152 PRK05868 hypothetical protein; 99.0 5.7E-09 1.2E-13 92.6 14.5 130 8-150 2-161 (372)
153 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 3.5E-09 7.6E-14 94.5 13.2 132 7-150 2-164 (390)
154 PF01946 Thi4: Thi4 family; PD 99.0 1.3E-09 2.8E-14 86.3 9.0 137 6-147 16-163 (230)
155 PF00070 Pyr_redox: Pyridine n 99.0 4.7E-09 1E-13 71.5 10.0 80 9-125 1-80 (80)
156 PRK05192 tRNA uridine 5-carbox 99.0 5.7E-09 1.2E-13 96.1 13.4 132 6-149 3-157 (618)
157 PRK11259 solA N-methyltryptoph 99.0 6.7E-09 1.5E-13 92.3 13.6 36 7-42 3-38 (376)
158 TIGR01377 soxA_mon sarcosine o 99.0 5.7E-09 1.2E-13 92.9 13.1 59 79-150 143-201 (380)
159 PRK12266 glpD glycerol-3-phosp 99.0 1.1E-08 2.3E-13 94.3 14.7 39 6-44 5-43 (508)
160 PRK06481 fumarate reductase fl 99.0 2.6E-08 5.7E-13 91.8 16.9 39 6-44 60-98 (506)
161 PF13450 NAD_binding_8: NAD(P) 99.0 9.1E-10 2E-14 72.2 5.0 48 12-59 1-48 (68)
162 PRK13369 glycerol-3-phosphate 99.0 2.1E-08 4.5E-13 92.5 15.3 63 79-149 153-215 (502)
163 PLN02661 Putative thiazole syn 99.0 5.9E-09 1.3E-13 89.7 10.4 137 6-147 91-242 (357)
164 PRK11728 hydroxyglutarate oxid 98.9 1.3E-08 2.9E-13 91.0 12.9 58 79-149 147-204 (393)
165 PRK07121 hypothetical protein; 98.9 4.7E-08 1E-12 90.0 16.3 39 6-44 19-57 (492)
166 PF00890 FAD_binding_2: FAD bi 98.9 1.5E-08 3.3E-13 91.3 12.8 135 9-150 1-204 (417)
167 KOG2755 Oxidoreductase [Genera 98.9 3.5E-09 7.5E-14 85.5 7.2 160 9-228 1-173 (334)
168 PRK01747 mnmC bifunctional tRN 98.9 1.3E-08 2.8E-13 96.9 12.3 34 8-41 261-294 (662)
169 TIGR01789 lycopene_cycl lycope 98.9 1.4E-08 3.1E-13 89.8 11.6 122 9-149 1-138 (370)
170 PRK12409 D-amino acid dehydrog 98.9 4.2E-08 9.2E-13 88.3 15.0 34 8-41 2-35 (410)
171 PRK11101 glpA sn-glycerol-3-ph 98.9 3E-08 6.6E-13 92.1 14.3 38 6-43 5-42 (546)
172 PTZ00383 malate:quinone oxidor 98.9 2.3E-08 5E-13 91.2 13.1 62 79-150 209-274 (497)
173 KOG2415 Electron transfer flav 98.9 8.9E-09 1.9E-13 88.5 9.4 145 1-148 70-255 (621)
174 PRK05976 dihydrolipoamide dehy 98.9 7.9E-08 1.7E-12 88.1 16.4 105 7-154 180-284 (472)
175 KOG2820 FAD-dependent oxidored 98.9 2.2E-08 4.7E-13 83.9 11.4 145 1-155 1-218 (399)
176 COG0579 Predicted dehydrogenas 98.9 1.9E-08 4.2E-13 88.9 11.7 37 7-43 3-41 (429)
177 PF01134 GIDA: Glucose inhibit 98.9 7.1E-09 1.5E-13 90.6 8.8 124 9-147 1-150 (392)
178 PLN02985 squalene monooxygenas 98.9 3.6E-08 7.8E-13 90.7 13.5 137 6-150 42-209 (514)
179 TIGR00136 gidA glucose-inhibit 98.9 4.1E-08 8.9E-13 90.4 13.6 131 8-149 1-154 (617)
180 TIGR01350 lipoamide_DH dihydro 98.9 9.9E-08 2.1E-12 87.2 16.0 103 7-154 170-272 (461)
181 TIGR03329 Phn_aa_oxid putative 98.9 2.4E-08 5.2E-13 91.1 11.9 35 7-41 24-60 (460)
182 PRK08274 tricarballylate dehyd 98.9 9.1E-08 2E-12 87.6 15.6 136 7-149 4-192 (466)
183 PLN02927 antheraxanthin epoxid 98.9 6E-08 1.3E-12 90.8 14.2 131 5-149 79-248 (668)
184 PRK04965 NADH:flavorubredoxin 98.9 6.5E-08 1.4E-12 86.0 13.9 97 7-147 141-237 (377)
185 TIGR03364 HpnW_proposed FAD de 98.9 3.8E-08 8.3E-13 87.1 12.4 34 8-41 1-34 (365)
186 TIGR02053 MerA mercuric reduct 98.8 2.1E-07 4.7E-12 85.0 17.3 104 7-154 166-269 (463)
187 PRK13339 malate:quinone oxidor 98.8 9.9E-08 2.1E-12 86.9 14.8 38 6-43 5-44 (497)
188 PRK08275 putative oxidoreducta 98.8 1.6E-07 3.4E-12 87.7 16.3 145 1-150 3-201 (554)
189 TIGR01373 soxB sarcosine oxida 98.8 9.2E-08 2E-12 86.0 14.3 37 6-42 29-67 (407)
190 COG1249 Lpd Pyruvate/2-oxoglut 98.8 8.3E-08 1.8E-12 86.2 13.8 105 6-155 172-276 (454)
191 PLN02464 glycerol-3-phosphate 98.8 7.2E-08 1.6E-12 90.8 14.0 40 5-44 69-108 (627)
192 PRK06416 dihydrolipoamide dehy 98.8 2E-07 4.3E-12 85.2 16.3 104 7-154 172-275 (462)
193 PRK07057 sdhA succinate dehydr 98.8 2E-07 4.4E-12 87.4 16.4 39 5-43 10-48 (591)
194 COG0578 GlpA Glycerol-3-phosph 98.8 1.3E-07 2.9E-12 85.5 14.4 41 6-46 11-51 (532)
195 PRK06912 acoL dihydrolipoamide 98.8 2.3E-07 5E-12 84.7 16.2 102 7-154 170-271 (458)
196 PRK06263 sdhA succinate dehydr 98.8 9.4E-08 2E-12 89.0 13.6 141 1-149 1-197 (543)
197 PTZ00139 Succinate dehydrogena 98.8 9.5E-08 2.1E-12 89.9 13.3 39 6-44 28-66 (617)
198 PRK08958 sdhA succinate dehydr 98.8 2.2E-07 4.8E-12 87.0 15.6 44 1-44 1-44 (588)
199 PRK09078 sdhA succinate dehydr 98.8 8.9E-08 1.9E-12 89.9 12.9 38 6-43 11-48 (598)
200 TIGR01320 mal_quin_oxido malat 98.8 1.5E-07 3.1E-12 86.1 13.5 66 79-150 176-241 (483)
201 COG1252 Ndh NADH dehydrogenase 98.8 8.4E-08 1.8E-12 84.3 11.4 133 8-196 156-301 (405)
202 PRK06854 adenylylsulfate reduc 98.8 2E-07 4.3E-12 87.7 14.5 37 6-42 10-48 (608)
203 PRK07804 L-aspartate oxidase; 98.8 1.5E-07 3.3E-12 87.4 13.4 139 6-150 15-211 (541)
204 PRK07251 pyridine nucleotide-d 98.8 1.6E-07 3.6E-12 85.2 13.2 100 7-154 157-256 (438)
205 PLN00128 Succinate dehydrogena 98.7 3.1E-07 6.7E-12 86.6 15.4 39 6-44 49-87 (635)
206 PRK06370 mercuric reductase; V 98.7 4.8E-07 1.1E-11 82.7 16.2 104 7-154 171-274 (463)
207 PRK12839 hypothetical protein; 98.7 2E-07 4.4E-12 87.0 13.8 41 5-45 6-46 (572)
208 PRK09754 phenylpropionate diox 98.7 1.2E-07 2.6E-12 84.9 11.6 99 7-152 144-242 (396)
209 PRK07573 sdhA succinate dehydr 98.7 4.2E-07 9.2E-12 85.9 15.7 37 7-43 35-71 (640)
210 PRK06116 glutathione reductase 98.7 4.7E-07 1E-11 82.5 15.4 102 7-154 167-268 (450)
211 PRK08641 sdhA succinate dehydr 98.7 5.3E-07 1.2E-11 84.6 15.9 38 7-44 3-40 (589)
212 PRK08401 L-aspartate oxidase; 98.7 1.9E-07 4.1E-12 85.3 12.5 35 8-42 2-36 (466)
213 PRK07818 dihydrolipoamide dehy 98.7 5.7E-07 1.2E-11 82.3 15.6 105 7-154 172-276 (466)
214 PRK05249 soluble pyridine nucl 98.7 2.3E-07 5E-12 84.8 12.9 101 7-154 175-275 (461)
215 PRK06327 dihydrolipoamide dehy 98.7 7.8E-07 1.7E-11 81.5 16.3 105 7-154 183-287 (475)
216 PRK06452 sdhA succinate dehydr 98.7 4.9E-07 1.1E-11 84.4 14.9 39 6-44 4-42 (566)
217 PRK00711 D-amino acid dehydrog 98.7 2.6E-07 5.6E-12 83.3 12.6 34 8-41 1-34 (416)
218 TIGR00551 nadB L-aspartate oxi 98.7 3.4E-07 7.4E-12 84.1 13.5 134 7-150 2-190 (488)
219 PRK12842 putative succinate de 98.7 3.4E-07 7.4E-12 85.8 13.7 40 5-44 7-46 (574)
220 PRK12835 3-ketosteroid-delta-1 98.7 7.7E-07 1.7E-11 83.4 15.8 39 6-44 10-48 (584)
221 TIGR01812 sdhA_frdA_Gneg succi 98.7 5.4E-07 1.2E-11 84.4 14.5 35 9-43 1-35 (566)
222 PRK13977 myosin-cross-reactive 98.7 9.9E-07 2.2E-11 80.8 15.5 41 7-47 22-66 (576)
223 PRK06175 L-aspartate oxidase; 98.7 4.2E-07 9.2E-12 82.2 13.1 38 6-44 3-40 (433)
224 COG1232 HemY Protoporphyrinoge 98.7 5.2E-07 1.1E-11 80.5 13.1 40 8-47 1-42 (444)
225 PTZ00306 NADH-dependent fumara 98.7 9E-07 2E-11 89.1 16.2 40 6-45 408-447 (1167)
226 PRK07803 sdhA succinate dehydr 98.6 9.4E-07 2E-11 83.5 15.3 38 6-43 7-44 (626)
227 PRK07846 mycothione reductase; 98.6 9.5E-07 2.1E-11 80.4 14.9 100 7-154 166-265 (451)
228 PF04820 Trp_halogenase: Trypt 98.6 4.7E-08 1E-12 88.7 6.2 60 77-147 150-209 (454)
229 TIGR01424 gluta_reduc_2 glutat 98.6 4.8E-07 1E-11 82.3 12.8 100 7-153 166-265 (446)
230 PF00070 Pyr_redox: Pyridine n 98.6 3E-08 6.4E-13 67.6 3.7 48 188-236 1-48 (80)
231 COG1233 Phytoene dehydrogenase 98.6 4.6E-08 1E-12 89.6 6.0 43 7-49 3-45 (487)
232 PRK06134 putative FAD-binding 98.6 1.9E-06 4.1E-11 80.9 16.8 40 6-45 11-50 (581)
233 PLN02815 L-aspartate oxidase 98.6 7.8E-07 1.7E-11 83.2 14.1 37 7-44 29-65 (594)
234 PRK05945 sdhA succinate dehydr 98.6 5.3E-07 1.1E-11 84.5 13.0 38 7-44 3-42 (575)
235 PRK06292 dihydrolipoamide dehy 98.6 1.5E-06 3.2E-11 79.5 15.7 103 7-154 169-271 (460)
236 PRK12837 3-ketosteroid-delta-1 98.6 2.1E-06 4.6E-11 79.4 16.8 43 1-44 1-43 (513)
237 PF06039 Mqo: Malate:quinone o 98.6 8.3E-07 1.8E-11 78.2 13.1 65 81-151 181-246 (488)
238 COG0665 DadA Glycine/D-amino a 98.6 2.5E-07 5.4E-12 82.5 10.2 38 6-43 3-40 (387)
239 PRK06115 dihydrolipoamide dehy 98.6 9.4E-07 2E-11 80.8 13.9 106 6-153 173-278 (466)
240 PRK12845 3-ketosteroid-delta-1 98.6 2.4E-06 5.1E-11 79.7 16.6 40 5-45 14-53 (564)
241 KOG1335 Dihydrolipoamide dehyd 98.6 1.4E-06 3E-11 74.5 13.5 155 6-210 210-368 (506)
242 PLN02507 glutathione reductase 98.6 8E-07 1.7E-11 81.8 13.1 101 7-154 203-303 (499)
243 PRK05257 malate:quinone oxidor 98.6 1.5E-06 3.4E-11 79.6 14.8 37 6-42 4-42 (494)
244 PRK08205 sdhA succinate dehydr 98.6 2.7E-06 5.8E-11 79.9 16.5 38 6-44 4-41 (583)
245 PRK09231 fumarate reductase fl 98.6 8.3E-07 1.8E-11 83.2 13.0 39 6-44 3-43 (582)
246 PTZ00367 squalene epoxidase; P 98.6 7.4E-07 1.6E-11 82.8 12.5 35 6-40 32-66 (567)
247 PRK07845 flavoprotein disulfid 98.6 8.8E-07 1.9E-11 81.0 12.9 101 7-154 177-277 (466)
248 TIGR03452 mycothione_red mycot 98.6 2E-06 4.3E-11 78.3 15.1 100 7-154 169-268 (452)
249 PRK14727 putative mercuric red 98.6 2.8E-06 6.2E-11 77.9 16.2 98 7-153 188-285 (479)
250 TIGR01421 gluta_reduc_1 glutat 98.6 1.1E-06 2.5E-11 79.9 13.4 103 7-154 166-268 (450)
251 KOG0029 Amine oxidase [Seconda 98.6 7.5E-08 1.6E-12 87.6 5.6 39 6-44 14-52 (501)
252 PRK07843 3-ketosteroid-delta-1 98.6 3.3E-06 7.2E-11 78.8 16.7 44 1-44 1-44 (557)
253 PRK08255 salicylyl-CoA 5-hydro 98.6 2.2E-07 4.9E-12 89.7 8.9 118 8-149 1-141 (765)
254 PRK09564 coenzyme A disulfide 98.6 8.1E-07 1.8E-11 80.8 12.0 99 7-152 149-247 (444)
255 PRK07208 hypothetical protein; 98.6 2.1E-07 4.6E-12 85.5 8.3 46 6-51 3-48 (479)
256 PRK06467 dihydrolipoamide dehy 98.6 1.7E-06 3.6E-11 79.3 14.0 104 7-154 174-277 (471)
257 TIGR01811 sdhA_Bsu succinate d 98.6 2.2E-06 4.9E-11 80.5 15.1 33 10-42 1-33 (603)
258 PRK06069 sdhA succinate dehydr 98.5 2.4E-06 5.1E-11 80.2 14.9 39 6-44 4-45 (577)
259 PRK09077 L-aspartate oxidase; 98.5 2.2E-06 4.8E-11 79.7 14.5 39 5-44 6-44 (536)
260 TIGR01176 fum_red_Fp fumarate 98.5 3.2E-06 6.9E-11 79.1 15.5 38 7-44 3-42 (580)
261 PRK07395 L-aspartate oxidase; 98.5 7.9E-07 1.7E-11 82.7 11.4 39 5-44 7-45 (553)
262 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.1E-06 2.4E-11 79.6 12.1 99 7-153 137-235 (427)
263 PRK14694 putative mercuric red 98.5 1.6E-06 3.4E-11 79.5 13.0 99 7-154 178-276 (468)
264 PRK13512 coenzyme A disulfide 98.5 7E-07 1.5E-11 81.0 10.5 96 7-153 148-243 (438)
265 PRK08010 pyridine nucleotide-d 98.5 1.5E-06 3.3E-11 78.9 12.8 99 7-153 158-256 (441)
266 PRK12844 3-ketosteroid-delta-1 98.5 4.6E-06 9.9E-11 77.9 15.9 40 6-45 5-44 (557)
267 COG0445 GidA Flavin-dependent 98.5 2.7E-07 5.9E-12 82.3 7.1 131 7-148 4-157 (621)
268 PRK08071 L-aspartate oxidase; 98.5 2E-06 4.4E-11 79.4 13.0 37 7-44 3-39 (510)
269 TIGR01438 TGR thioredoxin and 98.5 2.9E-06 6.3E-11 77.8 13.8 103 7-154 180-282 (484)
270 PRK12843 putative FAD-binding 98.5 5.3E-06 1.2E-10 77.8 15.7 40 7-46 16-55 (578)
271 KOG2614 Kynurenine 3-monooxyge 98.5 1.7E-06 3.6E-11 75.0 11.0 35 8-42 3-37 (420)
272 PRK14989 nitrite reductase sub 98.5 1.5E-06 3.2E-11 84.5 11.9 103 7-153 145-247 (847)
273 PTZ00058 glutathione reductase 98.5 2.5E-06 5.4E-11 79.3 12.8 103 7-154 237-339 (561)
274 KOG2404 Fumarate reductase, fl 98.5 2.2E-06 4.8E-11 71.7 11.0 137 9-150 11-207 (477)
275 COG0446 HcaD Uncharacterized N 98.5 3.3E-06 7.1E-11 75.9 13.3 102 7-152 136-238 (415)
276 PRK13748 putative mercuric red 98.5 2.6E-06 5.7E-11 79.9 12.8 99 7-154 270-368 (561)
277 TIGR01423 trypano_reduc trypan 98.5 3.2E-06 6.9E-11 77.5 12.9 101 7-153 187-290 (486)
278 COG1148 HdrA Heterodisulfide r 98.4 3.4E-07 7.3E-12 80.4 6.0 39 7-45 124-162 (622)
279 PTZ00052 thioredoxin reductase 98.4 3.7E-06 8.1E-11 77.5 13.2 100 7-154 182-281 (499)
280 PRK11883 protoporphyrinogen ox 98.4 3E-07 6.5E-12 83.8 5.7 39 8-46 1-41 (451)
281 PRK08626 fumarate reductase fl 98.4 7.5E-06 1.6E-10 77.7 15.2 38 6-43 4-41 (657)
282 TIGR02374 nitri_red_nirB nitri 98.4 1.8E-06 3.8E-11 83.7 11.1 101 7-153 140-240 (785)
283 COG0562 Glf UDP-galactopyranos 98.4 1.2E-06 2.5E-11 73.4 8.3 75 8-94 2-78 (374)
284 KOG1346 Programmed cell death 98.4 7.5E-07 1.6E-11 76.8 7.0 177 7-216 178-381 (659)
285 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 1.1E-06 2.4E-11 78.2 8.4 36 8-43 1-36 (433)
286 PLN02576 protoporphyrinogen ox 98.4 5.8E-07 1.3E-11 83.0 6.8 41 5-45 10-51 (496)
287 TIGR02733 desat_CrtD C-3',4' d 98.4 5.9E-07 1.3E-11 82.8 6.6 39 8-46 2-40 (492)
288 COG2907 Predicted NAD/FAD-bind 98.4 2.5E-06 5.4E-11 72.1 9.2 41 3-44 4-44 (447)
289 PTZ00153 lipoamide dehydrogena 98.4 6.5E-06 1.4E-10 77.7 13.0 110 7-154 312-430 (659)
290 PTZ00318 NADH dehydrogenase-li 98.4 7.6E-06 1.6E-10 74.0 12.9 91 8-147 174-278 (424)
291 PRK07233 hypothetical protein; 98.4 5.5E-07 1.2E-11 81.6 5.5 38 9-46 1-38 (434)
292 KOG1298 Squalene monooxygenase 98.4 2.4E-06 5.1E-11 73.2 8.7 35 6-40 44-78 (509)
293 PLN02676 polyamine oxidase 98.3 1E-06 2.2E-11 80.8 6.9 48 6-53 25-73 (487)
294 TIGR02730 carot_isom carotene 98.3 8.1E-07 1.7E-11 81.9 6.2 40 8-47 1-40 (493)
295 PLN02268 probable polyamine ox 98.3 5.9E-07 1.3E-11 81.5 5.2 38 8-45 1-38 (435)
296 TIGR00562 proto_IX_ox protopor 98.3 9.1E-07 2E-11 80.9 6.5 39 7-45 2-44 (462)
297 TIGR02061 aprA adenosine phosp 98.3 1.7E-05 3.6E-10 74.5 14.8 33 9-41 1-37 (614)
298 TIGR02485 CobZ_N-term precorri 98.3 6.6E-06 1.4E-10 74.6 11.7 61 80-149 122-183 (432)
299 COG3349 Uncharacterized conser 98.3 7.1E-07 1.5E-11 79.6 5.0 37 8-44 1-37 (485)
300 PRK07512 L-aspartate oxidase; 98.3 7.8E-06 1.7E-10 75.6 12.1 34 6-41 8-41 (513)
301 TIGR02734 crtI_fam phytoene de 98.3 8.1E-07 1.8E-11 82.1 5.6 38 10-47 1-38 (502)
302 TIGR00031 UDP-GALP_mutase UDP- 98.3 1.1E-06 2.4E-11 77.3 6.1 40 8-47 2-41 (377)
303 PLN02546 glutathione reductase 98.3 1.2E-05 2.5E-10 74.9 12.7 102 7-154 252-353 (558)
304 COG1053 SdhA Succinate dehydro 98.3 1.3E-05 2.8E-10 74.3 12.7 40 5-44 4-43 (562)
305 PRK13800 putative oxidoreducta 98.3 3.5E-05 7.7E-10 75.9 16.4 35 7-41 13-47 (897)
306 KOG2311 NAD/FAD-utilizing prot 98.3 4.2E-06 9.1E-11 73.6 8.8 36 5-40 26-61 (679)
307 TIGR03140 AhpF alkyl hydropero 98.2 1.8E-05 3.9E-10 73.3 12.7 101 7-154 352-453 (515)
308 KOG2852 Possible oxidoreductas 98.2 2.1E-05 4.7E-10 64.9 11.5 40 5-44 8-53 (380)
309 PLN02568 polyamine oxidase 98.2 1.9E-06 4.2E-11 79.7 6.1 42 7-48 5-51 (539)
310 PRK10262 thioredoxin reductase 98.2 1.8E-05 3.9E-10 68.8 11.9 105 7-153 146-250 (321)
311 KOG0685 Flavin-containing amin 98.2 1.8E-06 3.9E-11 75.9 5.4 41 7-47 21-62 (498)
312 TIGR01292 TRX_reduct thioredox 98.2 2.1E-05 4.5E-10 67.5 11.8 98 7-152 141-239 (300)
313 PRK12416 protoporphyrinogen ox 98.2 2.3E-06 5.1E-11 78.3 5.0 37 8-44 2-44 (463)
314 TIGR02731 phytoene_desat phyto 98.1 2.7E-06 5.8E-11 77.6 5.2 37 9-45 1-37 (453)
315 COG1231 Monoamine oxidase [Ami 98.1 3.3E-06 7.1E-11 74.2 5.4 43 2-44 2-44 (450)
316 KOG1336 Monodehydroascorbate/f 98.1 2.3E-05 5E-10 69.1 10.2 107 7-157 213-319 (478)
317 PTZ00363 rab-GDP dissociation 98.1 3.2E-06 7E-11 76.2 5.0 42 6-47 3-44 (443)
318 PLN02529 lysine-specific histo 98.1 4.7E-06 1E-10 79.2 5.9 41 6-46 159-199 (738)
319 PRK15317 alkyl hydroperoxide r 98.1 4.6E-05 9.9E-10 70.7 12.0 100 7-153 351-451 (517)
320 TIGR03169 Nterm_to_SelD pyridi 98.1 6.6E-05 1.4E-09 66.5 12.5 91 7-147 145-241 (364)
321 KOG2844 Dimethylglycine dehydr 98.0 2.7E-05 5.8E-10 71.3 8.9 61 77-149 183-243 (856)
322 KOG2665 Predicted FAD-dependen 98.0 6E-05 1.3E-09 63.2 10.1 39 5-43 46-86 (453)
323 TIGR01316 gltA glutamate synth 98.0 0.00028 6.1E-09 64.3 15.6 34 7-40 272-305 (449)
324 TIGR02732 zeta_caro_desat caro 98.0 7.5E-06 1.6E-10 75.0 5.2 36 9-44 1-36 (474)
325 PLN02328 lysine-specific histo 98.0 1E-05 2.3E-10 77.4 5.8 40 6-45 237-276 (808)
326 PF13434 K_oxygenase: L-lysine 98.0 0.00015 3.2E-09 63.4 12.5 136 6-147 189-339 (341)
327 PLN02487 zeta-carotene desatur 98.0 9.5E-06 2.1E-10 75.4 5.3 40 7-46 75-114 (569)
328 PRK05335 tRNA (uracil-5-)-meth 97.9 1.2E-05 2.6E-10 71.3 5.2 35 8-42 3-37 (436)
329 PRK12831 putative oxidoreducta 97.9 0.00049 1.1E-08 63.0 15.4 35 6-40 280-314 (464)
330 TIGR02462 pyranose_ox pyranose 97.9 1.3E-05 2.9E-10 73.8 5.1 40 8-47 1-40 (544)
331 PLN02612 phytoene desaturase 97.9 1.6E-05 3.6E-10 74.3 5.6 39 6-44 92-130 (567)
332 PRK12770 putative glutamate sy 97.9 0.00037 7.9E-09 61.5 13.6 34 7-40 172-206 (352)
333 PRK12834 putative FAD-binding 97.9 1.8E-05 3.9E-10 73.9 5.5 39 6-44 3-43 (549)
334 KOG0042 Glycerol-3-phosphate d 97.9 2E-05 4.4E-10 70.4 5.3 41 7-47 67-107 (680)
335 COG0029 NadB Aspartate oxidase 97.9 0.00018 3.9E-09 64.1 11.0 33 9-42 9-41 (518)
336 KOG2853 Possible oxidoreductas 97.9 0.00023 5.1E-09 60.4 11.1 35 6-40 85-123 (509)
337 KOG3851 Sulfide:quinone oxidor 97.8 7.7E-05 1.7E-09 62.6 7.8 36 6-41 38-75 (446)
338 COG2509 Uncharacterized FAD-de 97.8 0.00025 5.3E-09 62.5 11.1 58 81-149 173-230 (486)
339 PF00732 GMC_oxred_N: GMC oxid 97.8 1.9E-05 4.1E-10 67.8 4.2 35 8-42 1-36 (296)
340 PLN03000 amine oxidase 97.8 3.1E-05 6.7E-10 74.4 5.8 43 6-48 183-225 (881)
341 KOG1276 Protoporphyrinogen oxi 97.8 3.2E-05 6.9E-10 67.4 5.0 42 6-47 10-53 (491)
342 PLN02976 amine oxidase 97.8 3.3E-05 7E-10 77.2 5.7 43 6-48 692-734 (1713)
343 PRK12778 putative bifunctional 97.8 0.001 2.2E-08 64.7 15.9 34 7-40 570-604 (752)
344 TIGR03143 AhpF_homolog putativ 97.7 0.00037 7.9E-09 65.3 11.2 35 7-41 143-177 (555)
345 PRK01438 murD UDP-N-acetylmura 97.7 0.00015 3.1E-09 66.8 8.1 34 7-40 16-49 (480)
346 PRK11749 dihydropyrimidine deh 97.7 0.00066 1.4E-08 62.1 11.9 34 7-40 273-307 (457)
347 KOG2495 NADH-dehydrogenase (ub 97.7 6.6E-05 1.4E-09 65.4 4.9 101 9-154 220-334 (491)
348 PRK12814 putative NADPH-depend 97.6 0.0039 8.4E-08 59.6 16.3 35 6-40 322-357 (652)
349 PRK05329 anaerobic glycerol-3- 97.6 0.0001 2.2E-09 66.2 5.2 34 7-40 2-35 (422)
350 TIGR01318 gltD_gamma_fam gluta 97.6 0.0046 1E-07 56.7 16.1 35 7-41 282-317 (467)
351 COG3075 GlpB Anaerobic glycero 97.5 0.00012 2.6E-09 61.8 4.7 34 7-40 2-35 (421)
352 PRK02106 choline dehydrogenase 97.5 0.00012 2.6E-09 68.7 5.1 35 6-40 4-39 (560)
353 TIGR01372 soxA sarcosine oxida 97.5 0.001 2.2E-08 66.5 11.4 96 7-153 317-413 (985)
354 KOG3855 Monooxygenase involved 97.5 0.0026 5.7E-08 55.5 12.3 39 5-43 34-78 (481)
355 PRK12769 putative oxidoreducta 97.5 0.0073 1.6E-07 57.9 16.5 34 7-40 468-502 (654)
356 COG2303 BetA Choline dehydroge 97.4 0.00018 3.9E-09 66.9 4.7 40 1-40 1-40 (542)
357 PRK12810 gltD glutamate syntha 97.4 0.0024 5.3E-08 58.6 11.7 34 7-40 281-315 (471)
358 TIGR01317 GOGAT_sm_gam glutama 97.4 0.016 3.5E-07 53.4 17.0 36 6-41 282-318 (485)
359 COG3573 Predicted oxidoreducta 97.4 0.00047 1E-08 58.5 6.0 40 6-45 4-45 (552)
360 KOG1346 Programmed cell death 97.3 0.00053 1.2E-08 59.7 6.1 101 6-153 346-451 (659)
361 PRK12779 putative bifunctional 97.3 0.003 6.5E-08 62.6 12.1 34 7-40 447-480 (944)
362 KOG4254 Phytoene desaturase [C 97.3 0.00024 5.2E-09 62.5 3.7 40 5-44 12-51 (561)
363 PLN02172 flavin-containing mon 97.3 0.0011 2.3E-08 60.6 8.0 35 6-40 203-237 (461)
364 PF06100 Strep_67kDa_ant: Stre 97.3 0.0057 1.2E-07 55.1 12.1 41 7-47 2-46 (500)
365 COG3486 IucD Lysine/ornithine 97.3 0.0055 1.2E-07 53.6 11.6 47 98-148 293-339 (436)
366 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00041 8.9E-09 61.8 4.9 33 8-40 1-33 (419)
367 PRK09853 putative selenate red 97.2 0.0077 1.7E-07 59.5 13.6 34 7-40 668-703 (1019)
368 KOG2960 Protein involved in th 97.1 0.00011 2.4E-09 58.1 0.3 43 7-49 76-121 (328)
369 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00063 1.4E-08 57.5 4.6 36 8-43 4-39 (439)
370 TIGR01810 betA choline dehydro 97.1 0.00049 1.1E-08 64.2 4.0 32 9-40 1-33 (532)
371 PLN02785 Protein HOTHEAD 97.1 0.00076 1.6E-08 63.3 5.1 35 5-40 53-87 (587)
372 PRK12809 putative oxidoreducta 97.0 0.044 9.6E-07 52.4 16.7 34 7-40 451-485 (639)
373 PRK12775 putative trifunctiona 96.9 0.013 2.7E-07 58.8 12.2 35 6-40 570-605 (1006)
374 KOG0405 Pyridine nucleotide-di 96.9 0.0044 9.6E-08 53.0 7.6 104 5-154 187-290 (478)
375 COG0492 TrxB Thioredoxin reduc 96.8 0.019 4.2E-07 49.3 10.8 98 7-153 143-240 (305)
376 TIGR03315 Se_ygfK putative sel 96.7 0.023 5E-07 56.4 11.8 35 6-40 665-701 (1012)
377 PF13450 NAD_binding_8: NAD(P) 96.7 0.0019 4.2E-08 42.1 3.1 29 191-219 1-29 (68)
378 PRK12771 putative glutamate sy 96.7 0.063 1.4E-06 50.6 14.3 34 7-40 267-301 (564)
379 PF00996 GDI: GDP dissociation 96.6 0.0026 5.7E-08 57.1 4.7 43 6-48 3-45 (438)
380 PRK13984 putative oxidoreducta 96.6 0.04 8.7E-07 52.3 13.0 31 7-37 418-454 (604)
381 PF00743 FMO-like: Flavin-bind 96.6 0.0063 1.4E-07 56.5 7.3 35 6-40 182-216 (531)
382 PRK05329 anaerobic glycerol-3- 96.6 0.023 5E-07 51.2 10.3 95 11-150 219-319 (422)
383 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0025 5.4E-08 49.2 3.7 32 9-40 1-32 (157)
384 PRK05335 tRNA (uracil-5-)-meth 96.5 0.003 6.6E-08 56.4 3.8 34 187-220 3-36 (436)
385 KOG1238 Glucose dehydrogenase/ 96.4 0.004 8.7E-08 57.5 4.5 38 5-42 55-93 (623)
386 COG0569 TrkA K+ transport syst 96.4 0.0051 1.1E-07 50.5 4.5 34 8-41 1-34 (225)
387 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.005 1.1E-07 48.7 4.3 32 9-40 1-32 (180)
388 KOG4716 Thioredoxin reductase 96.3 0.015 3.2E-07 49.7 6.9 101 7-147 198-298 (503)
389 TIGR00137 gid_trmFO tRNA:m(5)U 96.3 0.0042 9E-08 55.7 3.6 33 188-220 2-34 (433)
390 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.005 1.1E-07 48.9 3.5 34 8-41 1-34 (185)
391 TIGR03862 flavo_PP4765 unchara 96.2 0.031 6.7E-07 49.5 8.5 60 79-151 84-143 (376)
392 KOG4405 GDP dissociation inhib 96.2 0.006 1.3E-07 53.2 3.9 48 5-52 6-53 (547)
393 COG1251 NirB NAD(P)H-nitrite r 96.1 0.013 2.9E-07 55.0 6.3 101 7-153 145-245 (793)
394 PRK07066 3-hydroxybutyryl-CoA 96.1 0.01 2.2E-07 51.3 5.1 34 7-40 7-40 (321)
395 PF13241 NAD_binding_7: Putati 96.1 0.0052 1.1E-07 43.8 2.7 37 183-219 4-40 (103)
396 PF13241 NAD_binding_7: Putati 96.0 0.0072 1.6E-07 43.0 3.3 35 6-40 6-40 (103)
397 PRK07819 3-hydroxybutyryl-CoA 96.0 0.011 2.3E-07 50.5 4.6 34 8-41 6-39 (286)
398 PRK02705 murD UDP-N-acetylmura 95.9 0.009 1.9E-07 54.7 4.2 33 9-41 2-34 (459)
399 TIGR01470 cysG_Nterm siroheme 95.9 0.016 3.4E-07 46.9 5.0 35 6-40 8-42 (205)
400 PRK06719 precorrin-2 dehydroge 95.8 0.016 3.5E-07 44.7 4.7 34 6-39 12-45 (157)
401 KOG0029 Amine oxidase [Seconda 95.8 0.012 2.7E-07 54.1 4.6 36 184-219 13-48 (501)
402 PTZ00188 adrenodoxin reductase 95.8 0.018 3.9E-07 52.5 5.4 36 185-220 38-74 (506)
403 PLN02852 ferredoxin-NADP+ redu 95.8 0.013 2.8E-07 53.7 4.5 35 185-219 25-61 (491)
404 PRK06129 3-hydroxyacyl-CoA deh 95.7 0.013 2.8E-07 50.6 4.3 33 8-40 3-35 (308)
405 PRK07236 hypothetical protein; 95.7 0.012 2.6E-07 52.6 4.2 34 186-219 6-39 (386)
406 PF01494 FAD_binding_3: FAD bi 95.7 0.011 2.4E-07 51.7 3.7 32 188-219 3-34 (356)
407 PF01488 Shikimate_DH: Shikima 95.7 0.028 6E-07 42.2 5.4 35 6-40 11-46 (135)
408 PF01593 Amino_oxidase: Flavin 95.7 0.011 2.5E-07 53.0 3.8 39 99-147 225-263 (450)
409 PRK12409 D-amino acid dehydrog 95.7 0.012 2.7E-07 52.9 4.0 33 187-219 2-34 (410)
410 COG1148 HdrA Heterodisulfide r 95.6 0.013 2.8E-07 52.4 3.8 34 186-219 124-157 (622)
411 COG1635 THI4 Ribulose 1,5-bisp 95.6 0.017 3.6E-07 46.4 4.0 38 182-219 26-63 (262)
412 PRK14106 murD UDP-N-acetylmura 95.6 0.02 4.3E-07 52.3 5.2 35 6-40 4-38 (450)
413 PF01262 AlaDh_PNT_C: Alanine 95.6 0.021 4.5E-07 44.7 4.6 35 6-40 19-53 (168)
414 PRK09260 3-hydroxybutyryl-CoA 95.5 0.018 4E-07 49.2 4.4 33 8-40 2-34 (288)
415 PRK06718 precorrin-2 dehydroge 95.5 0.026 5.7E-07 45.5 4.9 34 6-39 9-42 (202)
416 PRK06719 precorrin-2 dehydroge 95.5 0.019 4.1E-07 44.3 3.8 35 182-216 9-43 (157)
417 PRK08293 3-hydroxybutyryl-CoA 95.5 0.02 4.3E-07 49.0 4.4 33 8-40 4-36 (287)
418 PRK06847 hypothetical protein; 95.4 0.018 3.8E-07 51.2 4.1 34 186-219 4-37 (375)
419 PRK06567 putative bifunctional 95.4 0.019 4.2E-07 56.3 4.4 36 184-219 381-416 (1028)
420 PF02558 ApbA: Ketopantoate re 95.3 0.027 5.9E-07 43.0 4.4 31 10-40 1-31 (151)
421 PRK07530 3-hydroxybutyryl-CoA 95.3 0.023 4.9E-07 48.7 4.3 33 8-40 5-37 (292)
422 PRK06249 2-dehydropantoate 2-r 95.3 0.032 7E-07 48.3 5.3 34 7-40 5-38 (313)
423 COG0562 Glf UDP-galactopyranos 95.3 0.023 5E-07 48.3 4.1 34 188-222 3-36 (374)
424 TIGR03197 MnmC_Cterm tRNA U-34 95.3 0.044 9.6E-07 48.8 6.3 60 78-150 132-191 (381)
425 PRK08163 salicylate hydroxylas 95.3 0.021 4.5E-07 51.2 4.2 34 186-219 4-37 (396)
426 PRK05868 hypothetical protein; 95.3 0.018 4E-07 51.2 3.7 33 187-219 2-34 (372)
427 PRK08268 3-hydroxy-acyl-CoA de 95.3 0.028 6E-07 52.1 4.9 41 1-41 1-41 (507)
428 TIGR01470 cysG_Nterm siroheme 95.3 0.023 5E-07 45.9 3.9 36 184-219 7-42 (205)
429 COG1004 Ugd Predicted UDP-gluc 95.2 0.025 5.4E-07 49.5 4.2 33 8-40 1-33 (414)
430 PRK06718 precorrin-2 dehydroge 95.2 0.023 5E-07 45.8 3.8 36 183-218 7-42 (202)
431 PF01266 DAO: FAD dependent ox 95.2 0.02 4.4E-07 50.1 3.8 31 188-218 1-31 (358)
432 PRK06035 3-hydroxyacyl-CoA deh 95.2 0.025 5.4E-07 48.5 4.2 34 8-41 4-37 (291)
433 PRK05708 2-dehydropantoate 2-r 95.1 0.036 7.8E-07 47.8 5.0 34 7-40 2-35 (305)
434 PRK06753 hypothetical protein; 95.1 0.023 4.9E-07 50.5 3.9 32 188-219 2-33 (373)
435 PRK06522 2-dehydropantoate 2-r 95.1 0.031 6.7E-07 48.1 4.6 32 9-40 2-33 (304)
436 PRK06475 salicylate hydroxylas 95.1 0.023 5E-07 51.0 3.9 33 187-219 3-35 (400)
437 PF13478 XdhC_C: XdhC Rossmann 95.1 0.025 5.5E-07 42.4 3.4 32 10-41 1-32 (136)
438 PRK07233 hypothetical protein; 95.1 0.023 5E-07 51.4 3.8 32 188-219 1-32 (434)
439 PF07992 Pyr_redox_2: Pyridine 95.0 0.023 5.1E-07 45.4 3.3 32 188-219 1-32 (201)
440 PRK14619 NAD(P)H-dependent gly 95.0 0.042 9.1E-07 47.5 5.0 35 6-40 3-37 (308)
441 PRK11883 protoporphyrinogen ox 95.0 0.026 5.6E-07 51.4 4.0 33 187-219 1-35 (451)
442 PRK12921 2-dehydropantoate 2-r 95.0 0.037 8E-07 47.7 4.7 30 9-38 2-31 (305)
443 PRK11259 solA N-methyltryptoph 95.0 0.026 5.7E-07 50.1 3.8 32 188-219 5-36 (376)
444 TIGR00518 alaDH alanine dehydr 95.0 0.04 8.7E-07 48.9 4.9 35 6-40 166-200 (370)
445 PF01134 GIDA: Glucose inhibit 95.0 0.024 5.1E-07 50.2 3.4 29 188-216 1-29 (392)
446 PLN02268 probable polyamine ox 95.0 0.025 5.5E-07 51.4 3.7 33 187-219 1-33 (435)
447 TIGR02032 GG-red-SF geranylger 94.9 0.028 6.1E-07 47.9 3.8 32 188-219 2-33 (295)
448 PF00899 ThiF: ThiF family; I 94.9 0.041 8.8E-07 41.2 4.2 34 7-40 2-36 (135)
449 TIGR01373 soxB sarcosine oxida 94.9 0.038 8.2E-07 49.7 4.8 47 173-219 17-65 (407)
450 PRK04148 hypothetical protein; 94.9 0.028 6E-07 41.8 3.2 34 7-41 17-50 (134)
451 TIGR01377 soxA_mon sarcosine o 94.9 0.027 5.9E-07 50.0 3.8 32 188-219 2-33 (380)
452 COG3349 Uncharacterized conser 94.9 0.029 6.4E-07 50.7 3.9 33 187-219 1-33 (485)
453 PRK07364 2-octaprenyl-6-methox 94.9 0.025 5.5E-07 50.9 3.6 33 187-219 19-51 (415)
454 PRK05808 3-hydroxybutyryl-CoA 94.9 0.037 8E-07 47.2 4.4 34 8-41 4-37 (282)
455 COG0654 UbiH 2-polyprenyl-6-me 94.9 0.028 6.1E-07 50.2 3.8 38 187-224 3-40 (387)
456 PRK01438 murD UDP-N-acetylmura 94.9 0.036 7.7E-07 51.1 4.5 36 184-219 14-49 (480)
457 PRK09424 pntA NAD(P) transhydr 94.9 0.036 7.8E-07 51.0 4.4 35 6-40 164-198 (509)
458 COG1233 Phytoene dehydrogenase 94.8 0.043 9.2E-07 50.7 4.8 33 187-219 4-36 (487)
459 PF01488 Shikimate_DH: Shikima 94.8 0.046 1E-06 41.0 4.2 37 183-219 9-46 (135)
460 PRK09126 hypothetical protein; 94.8 0.03 6.4E-07 50.1 3.6 33 187-219 4-36 (392)
461 KOG1399 Flavin-containing mono 94.7 0.034 7.4E-07 50.3 3.9 39 186-224 6-48 (448)
462 cd00401 AdoHcyase S-adenosyl-L 94.7 0.049 1.1E-06 48.8 4.8 35 6-40 201-235 (413)
463 PLN00093 geranylgeranyl diphos 94.7 0.074 1.6E-06 48.6 6.1 34 186-219 39-72 (450)
464 PRK12266 glpD glycerol-3-phosp 94.7 0.032 6.9E-07 51.8 3.7 33 187-219 7-39 (508)
465 PF01946 Thi4: Thi4 family; PD 94.7 0.031 6.7E-07 45.0 3.1 34 186-219 17-50 (230)
466 PF00056 Ldh_1_N: lactate/mala 94.7 0.061 1.3E-06 40.6 4.6 33 8-40 1-36 (141)
467 TIGR01988 Ubi-OHases Ubiquinon 94.7 0.032 6.8E-07 49.7 3.6 32 188-219 1-32 (385)
468 PRK07045 putative monooxygenas 94.7 0.035 7.6E-07 49.6 3.8 34 187-220 6-39 (388)
469 cd05292 LDH_2 A subgroup of L- 94.7 0.051 1.1E-06 46.9 4.6 34 8-41 1-36 (308)
470 PRK11064 wecC UDP-N-acetyl-D-m 94.6 0.045 9.8E-07 49.4 4.4 34 8-41 4-37 (415)
471 PLN02545 3-hydroxybutyryl-CoA 94.6 0.051 1.1E-06 46.6 4.6 33 8-40 5-37 (295)
472 PRK08773 2-octaprenyl-3-methyl 94.6 0.035 7.7E-07 49.7 3.7 33 187-219 7-39 (392)
473 TIGR01763 MalateDH_bact malate 94.6 0.064 1.4E-06 46.2 5.1 33 8-40 2-35 (305)
474 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.07 1.5E-06 41.6 4.8 34 6-39 43-77 (168)
475 PF01210 NAD_Gly3P_dh_N: NAD-d 94.6 0.028 6.1E-07 43.3 2.6 32 188-219 1-32 (157)
476 PRK07588 hypothetical protein; 94.6 0.038 8.2E-07 49.4 3.8 32 188-219 2-33 (391)
477 TIGR02352 thiamin_ThiO glycine 94.6 0.18 3.9E-06 43.8 8.0 62 77-151 133-195 (337)
478 PF02254 TrkA_N: TrkA-N domain 94.5 0.067 1.5E-06 38.7 4.4 31 10-40 1-31 (116)
479 PRK14618 NAD(P)H-dependent gly 94.5 0.066 1.4E-06 46.7 5.1 34 7-40 4-37 (328)
480 PRK08013 oxidoreductase; Provi 94.5 0.037 8.1E-07 49.7 3.6 33 187-219 4-36 (400)
481 PRK11101 glpA sn-glycerol-3-ph 94.5 0.039 8.5E-07 51.7 3.8 33 187-219 7-39 (546)
482 TIGR02354 thiF_fam2 thiamine b 94.5 0.064 1.4E-06 43.2 4.5 34 7-40 21-55 (200)
483 PRK07208 hypothetical protein; 94.5 0.043 9.4E-07 50.5 4.1 34 186-219 4-37 (479)
484 PRK07494 2-octaprenyl-6-methox 94.5 0.037 8.1E-07 49.4 3.5 33 187-219 8-40 (388)
485 TIGR03026 NDP-sugDHase nucleot 94.5 0.047 1E-06 49.2 4.2 33 9-41 2-34 (411)
486 TIGR01984 UbiH 2-polyprenyl-6- 94.5 0.038 8.1E-07 49.2 3.5 32 188-219 1-33 (382)
487 PRK08229 2-dehydropantoate 2-r 94.5 0.064 1.4E-06 47.0 4.9 33 8-40 3-35 (341)
488 TIGR02360 pbenz_hydroxyl 4-hyd 94.4 0.045 9.9E-07 49.0 4.0 34 187-220 3-36 (390)
489 PRK14620 NAD(P)H-dependent gly 94.4 0.059 1.3E-06 47.0 4.6 32 9-40 2-33 (326)
490 PRK05192 tRNA uridine 5-carbox 94.4 0.04 8.7E-07 51.7 3.6 33 187-219 5-37 (618)
491 PRK06130 3-hydroxybutyryl-CoA 94.4 0.058 1.3E-06 46.7 4.5 33 8-40 5-37 (311)
492 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.085 1.9E-06 42.5 5.1 35 6-40 27-61 (200)
493 PRK11728 hydroxyglutarate oxid 94.4 0.042 9.2E-07 49.2 3.7 32 188-219 4-37 (393)
494 TIGR02964 xanthine_xdhC xanthi 94.3 0.076 1.7E-06 44.2 4.8 36 6-41 99-134 (246)
495 PRK00711 D-amino acid dehydrog 94.3 0.048 1E-06 49.2 3.9 32 188-219 2-33 (416)
496 TIGR03219 salicylate_mono sali 94.3 0.045 9.8E-07 49.4 3.7 32 188-219 2-34 (414)
497 PRK07608 ubiquinone biosynthes 94.3 0.045 9.8E-07 48.8 3.7 34 187-220 6-39 (388)
498 TIGR03364 HpnW_proposed FAD de 94.3 0.047 1E-06 48.3 3.8 32 188-219 2-33 (365)
499 TIGR02733 desat_CrtD C-3',4' d 94.3 0.049 1.1E-06 50.4 4.0 33 187-219 2-34 (492)
500 TIGR02028 ChlP geranylgeranyl 94.3 0.049 1.1E-06 48.9 3.8 32 188-219 2-33 (398)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.4e-48 Score=352.06 Aligned_cols=274 Identities=33% Similarity=0.549 Sum_probs=173.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC---------CCCceEEecccccccCCCCCCCCCCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY---------SYDRLRLHLAKQFCQLPHLPFPSSYPMFV 78 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (301)
++|+|||||++||++|+.|.+.|+++++||+++.+||+|++. .|+++.++.++.++.|+++|+|++++.|+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 689999999999999999999999999999999999999853 58899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCC---CCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA---TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~---~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
++.++.+|++.|+++|++..+|+++++|+++++.++ .+.|.|++.+.+ ..++ -.+|+||+|||.++.|++|.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g----~~~~-~~fD~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG----KEET-EEFDAVVVATGHFSKPNIPE 156 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT----EEEE-EEECEEEEEE-SSSCESB--
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC----eEEE-EEeCeEEEcCCCcCCCCCCh
Confidence 999999999999999999999999999999998653 368999886432 2244 56899999999999999995
Q ss_pred --CCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH-----
Q 022182 156 --IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV----- 228 (301)
Q Consensus 156 --~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~----- 228 (301)
+||++.| +|.++||.+|++++.+++|+|+|||+|+||+|+|.+|++.+++|++..|++.|++|+...
T Consensus 157 ~~~~G~e~F------~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 157 PSFPGLEKF------KGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ---CTGGGH------CSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhcC------CeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999753
Q ss_pred ------HHHHHHhhcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCcceeeccCCCceEEccchhhhhhcCeEEEee
Q 022182 229 ------YLGVVLFKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPFFMKAAYGKYPVIDAGTCEKIKSGQIQVIN 300 (301)
Q Consensus 229 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~v~~ 300 (301)
+....+.+.+|....+.+........+ +...+|+. |.++.+ ...|++++++++.|.+|+|+++|
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~-~~~~~gl~-p~~~~~------~~~~~ind~l~~~i~~G~i~vk~ 300 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRF-DHENYGLK-PKHRFF------SQHPTINDELPNRIRSGRIKVKP 300 (531)
T ss_dssp ----------------------------------------------------------------------------EE
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccc-cccccc------ccccccccccccccccccccccc
Confidence 111223334555444443332222222 44567774 555444 37899999999999999999987
No 2
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=291.20 Aligned_cols=210 Identities=35% Similarity=0.635 Sum_probs=195.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (301)
...+||+|||||++|+++|.+|.+.|.. ++|||++..+||+|+.++|+++++++++..++++.+|++ +...++....+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~-~~~~~~~~~~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFR-WDEAFAPFAEI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccC-CcccCCCcccH
Confidence 3568999999999999999999999998 999999999999999999999999999999999999997 44567777779
Q ss_pred HHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccc
Q 022182 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
.+|+..+++.+++...+.+++.|..++++++++.|+|++.++.. .+ +.+|+||+|||.++.|++|+|+|.+.|
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~-----~~-~~a~~vV~ATG~~~~P~iP~~~G~~~f- 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT-----GE-LTADFVVVATGHLSEPYIPDFAGLDEF- 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe-----ee-EecCEEEEeecCCCCCCCCCCCCccCC-
Confidence 99999999999999999999999999999888899999998743 34 569999999999999999999999999
Q ss_pred cCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhh
Q 022182 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (301)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (301)
.|.++|+++|.+..++++|+|+|||+|+||+|++..|.+.|++||++.|++.+++|+..
T Consensus 158 -----~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~ 216 (443)
T COG2072 158 -----KGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPL 216 (443)
T ss_pred -----CceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999776
No 3
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.3e-36 Score=273.13 Aligned_cols=202 Identities=26% Similarity=0.439 Sum_probs=180.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC--------------------CCCceEEecccccccC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------------------SYDRLRLHLAKQFCQL 65 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~--------------------~~~~~~~~~~~~~~~~ 65 (301)
..++|+|||||++||++|.+|.+.|++++|||+++.+||.|.+. +|+.++++.++..+.|
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35799999999999999999999999999999999999999752 4777888999999999
Q ss_pred CCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEee
Q 022182 66 PHLPFPSS-------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (301)
Q Consensus 66 ~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~a 138 (301)
+++|++.. .+.||++.++.+|++++++++++..+|+++++|++++..+ +.|.|++.++.+ ...+ ..|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~---~~~~-~~~ 162 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGG---FSKD-EIF 162 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCC---ceEE-EEc
Confidence 99988653 3678999999999999999999997789999999998754 789999875421 1135 678
Q ss_pred CEEEEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEec
Q 022182 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (301)
Q Consensus 139 d~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (301)
|+||+|||.++.|.+|++||.+.| .|..+|+..|+.+..+++|+|+|||+|.||+|+|..|+..+++|++++|+
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f------~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSW------PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccC------CceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 999999999899999999999999 99999999999988999999999999999999999999999999999997
Q ss_pred C
Q 022182 219 P 219 (301)
Q Consensus 219 ~ 219 (301)
+
T Consensus 237 ~ 237 (461)
T PLN02172 237 S 237 (461)
T ss_pred c
Confidence 6
No 4
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-36 Score=267.36 Aligned_cols=201 Identities=35% Similarity=0.559 Sum_probs=182.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC--------C-CCceEEecccccccCCCCCCCCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY--------S-YDRLRLHLAKQFCQLPHLPFPSSYPM 76 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (301)
..++|+|||||+|||++|+.|.+.|+++++|||...+||+|.+. + |..++++.++.++.++++|+++..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35799999999999999999999999999999999999999987 5 99999999999999999999999666
Q ss_pred C-CCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 77 F-VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 77 ~-~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
+ |+..++.+||++||++|++...|+++++|..++...+ +.|.|.+.+..+. ..+ ..||.|++|||.+..|.+|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~---~~~-~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ---IEE-EIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc---eeE-EEeeEEEEcccCcCCCCCCc
Confidence 5 8888999999999999999999999999988877543 7899999876431 145 67899999999986699999
Q ss_pred CCC--ccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEe
Q 022182 156 IRG--LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVR 217 (301)
Q Consensus 156 ~~g--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r 217 (301)
++| .+.| +|.++|+.+|+.++.+.+|+|+|||.|+||+|++.+++..+++|++..+
T Consensus 160 ~~g~~~~~f------~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399|consen 160 IPGPGIESF------KGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred CCCCchhhc------CCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee
Confidence 988 6789 9999999999999999999999999999999999999999999988765
No 5
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=100.00 E-value=1.4e-33 Score=229.30 Aligned_cols=191 Identities=35% Similarity=0.597 Sum_probs=136.5
Q ss_pred EEECCChHHHHHHHHHhhCCCC-eEEEecCCCCCcccCCCCCCceEEeccccc---ccCCCCCCCC--------CCCCCC
Q 022182 11 IMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQF---CQLPHLPFPS--------SYPMFV 78 (301)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~g~~-v~vie~~~~~gg~w~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~ 78 (301)
+||||||+|+++|.+|.++|.+ ++|||+++.+||.|... ++...+..+..+ +.++.+.... ....++
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY-YSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFP 79 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH--TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSE
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe-CCCCccccCccccccccCCcccccccccCCCCCCCcccC
Confidence 7999999999999999999998 99999999999999842 222222222221 2222211100 124568
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g 158 (301)
+.+++.+|++++++++++.+ +++++|+++.+++ +.|.|++.++ .+ +.||+||+|||.++.|..|+++|
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i--~~~~~V~~v~~~~--~~w~v~~~~~-------~~-~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEI--RFNTRVESVRRDG--DGWTVTTRDG-------RT-IRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGE--ETS--EEEEEEET--TTEEEEETTS--------E-EEEEEEEE---SSCSB---S-TT
T ss_pred CHHHHHHHHHHHHhhcCccc--ccCCEEEEEEEec--cEEEEEEEec-------ce-eeeeeEEEeeeccCCCCcccccc
Confidence 99999999999999999874 9999999999986 5599999875 46 89999999999888999999999
Q ss_pred ccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceE
Q 022182 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (301)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (301)
..+ ...+|+.++.+...+++++|+|||+|.||+|+|..|++.|.+|++++|++.|+
T Consensus 148 -~~~-------~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~~ 203 (203)
T PF13738_consen 148 -SAF-------RPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIWY 203 (203)
T ss_dssp -GGC-------SEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS----
T ss_pred -ccc-------cceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCCC
Confidence 222 36899999988888899999999999999999999999999999999999763
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.93 E-value=3.4e-24 Score=184.40 Aligned_cols=175 Identities=25% Similarity=0.378 Sum_probs=135.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (301)
|||+|||||++|+++|..|++.|.+|+|+|+.. .||.|.... .+..++.+ +......++..++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~----------~~~~~~~~------~~~~~~~~~~~~l 63 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTT----------EVENYPGF------PEGISGPELMEKM 63 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecc----------cccccCCC------CCCCChHHHHHHH
Confidence 699999999999999999999999999999886 566544220 01111211 1224556888999
Q ss_pred HHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCCC
Q 022182 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (301)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~ 167 (301)
.++++++++.. ++ ++|++++..+ +.|.|++.++ .+ +.||+||+||| +.|..|.+||.+.|
T Consensus 64 ~~~~~~~gv~~--~~-~~v~~v~~~~--~~~~v~~~~~-------~~-~~~d~liiAtG--~~~~~~~i~g~~~~----- 123 (300)
T TIGR01292 64 KEQAVKFGAEI--IY-EEVIKVDLSD--RPFKVKTGDG-------KE-YTAKAVIIATG--ASARKLGIPGEDEF----- 123 (300)
T ss_pred HHHHHHcCCeE--EE-EEEEEEEecC--CeeEEEeCCC-------CE-EEeCEEEECCC--CCcccCCCCChhhc-----
Confidence 99999998765 66 7899988754 6788877653 46 89999999999 67788889987766
Q ss_pred CCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 168 GTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
.+..++.....+.....+++++|||+|.+|+|+|..|.+.+.+|++++|.+.
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 124 -LGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred -CCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 5554554444444455789999999999999999999999999999999873
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.93 E-value=5.9e-26 Score=201.70 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=171.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc-CCCCCCceEEeccccc-ccCCCCC--CCCCCCC-CCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQF-CQLPHLP--FPSSYPM-FVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w-~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~ 80 (301)
..||++|||+||+|..+|.+++++|.+++++|+...+||++ +..|.|+..+...... ..+.... +--.... -.+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999997777754 4555555433222211 1111110 0000011 2455
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCc-EEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQR-SVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~-~V~~i~~~~~-~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g 158 (301)
.++.++.++..+...-...-.+.. .|+.+.-... .+..+|.+... +. ++ ++++++|+||| ++|..|++++
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~-~~----~~-~~a~~iiIATG--S~p~~~~~~~ 154 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE-DK----ET-ITADNIIIATG--SRPRIPPGPG 154 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC-Cc----eE-EEeCEEEEcCC--CCCcCCCCCC
Confidence 666666655333321110001111 2222221110 01234555442 11 57 99999999999 9999999988
Q ss_pred ccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhhcC
Q 022182 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV 238 (301)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~l 238 (301)
.+.. .++.+.+..... ..|++++|||+|.+|+|+|..++++|.+||+++|.+ .+||.++.++++.+.+.|
T Consensus 155 ~~~~--------~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~-~iLp~~D~ei~~~~~~~l 224 (454)
T COG1249 155 IDGA--------RILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGD-RILPGEDPEISKELTKQL 224 (454)
T ss_pred CCCC--------eEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCCcCCHHHHHHHHHHH
Confidence 7643 356565544434 568999999999999999999999999999999999 899999999998888776
Q ss_pred CHHHHHHHHHHHHHHHhcCccccCCCCCCC--Ccc---eeeccCCCceEEccchhhhhh-----cCeEEEe
Q 022182 239 PFGWVDTLMVMLSRLVYGDLSKYGIPKPRE--GPF---FMKAAYGKYPVIDAGTCEKIK-----SGQIQVI 299 (301)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~i~-----~g~i~v~ 299 (301)
.+.+++...++.++....+.....+....+ +.+ .+..+.|+.|.++...++++- .|.|+|.
T Consensus 225 ~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD 295 (454)
T COG1249 225 EKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD 295 (454)
T ss_pred HhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC
Confidence 664455444433332221111111111111 112 223467999999987777732 4888885
No 8
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.7e-24 Score=180.03 Aligned_cols=174 Identities=24% Similarity=0.371 Sum_probs=135.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
..+||+||||||+||+||.++.+.+.+ ++|+|+.. .||..... . ....+|.+ +.-.+..++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~------~----~venypg~------~~~~~g~~L~ 64 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKT------T----DVENYPGF------PGGILGPELM 64 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccc------e----eecCCCCC------ccCCchHHHH
Confidence 358999999999999999999999998 66666543 44321110 0 11111111 2234678899
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+.+.+++..++... .. ..|..++... +.|.|++.++ + ++++.||+||| ..+..|.+||...|
T Consensus 65 ~~~~~~a~~~~~~~--~~-~~v~~v~~~~--~~F~v~t~~~--------~-~~ak~vIiAtG--~~~~~~~~~~e~e~-- 126 (305)
T COG0492 65 EQMKEQAEKFGVEI--VE-DEVEKVELEG--GPFKVKTDKG--------T-YEAKAVIIATG--AGARKLGVPGEEEF-- 126 (305)
T ss_pred HHHHHHHhhcCeEE--EE-EEEEEEeecC--ceEEEEECCC--------e-EEEeEEEECcC--CcccCCCCCcchhh--
Confidence 99999999988764 33 6677776644 2788888764 5 89999999999 67777888877778
Q ss_pred CCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.|.-+|.+..++. .+++|+|+|||+|.+|+|-|..|.+.+++||+++|++
T Consensus 127 ----~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~ 176 (305)
T COG0492 127 ----EGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176 (305)
T ss_pred ----cCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence 8888888888887 8899999999999999999999999999999999999
No 9
>PRK10262 thioredoxin reductase; Provisional
Probab=99.92 E-value=1.3e-23 Score=182.54 Aligned_cols=177 Identities=18% Similarity=0.299 Sum_probs=136.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...+||+||||||+|+++|..|+++|+++++||+. ..||.+.... ....++. .+...+.+++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~----------~~~~~~~------~~~~~~~~~~~ 66 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTT----------EVENWPG------DPNDLTGPLLM 66 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCc----------eECCCCC------CCCCCCHHHHH
Confidence 45789999999999999999999999999999965 5666543210 0111121 12335667888
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+++.+++..++... +.+ +|+.++..+ +.|+++... .. +.||+||+||| +.|..|++||.+.|
T Consensus 67 ~~~~~~~~~~~~~~--~~~-~v~~v~~~~--~~~~v~~~~--------~~-~~~d~vilAtG--~~~~~~~i~g~~~~-- 128 (321)
T PRK10262 67 ERMHEHATKFETEI--IFD-HINKVDLQN--RPFRLTGDS--------GE-YTCDALIIATG--ASARYLGLPSEEAF-- 128 (321)
T ss_pred HHHHHHHHHCCCEE--Eee-EEEEEEecC--CeEEEEecC--------CE-EEECEEEECCC--CCCCCCCCCCHHHc--
Confidence 99999998887643 443 567777654 667776532 35 78999999999 77888999998777
Q ss_pred CCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
.+..+|...+.+.....+++++|||+|.+|+|+|..|++.+.+|++++|++.
T Consensus 129 ----~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 129 ----KGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred ----CCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 6776777776665666789999999999999999999999999999999873
No 10
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.92 E-value=2.1e-23 Score=191.77 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=141.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...+||+||||||+|+++|.+|++.|++++|+++. +||.|... + .++.++ . ..+..+.++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~-~------------~~~~~~---~-~~~~~~~~l~ 269 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDT-M------------GIENFI---S-VPETEGPKLA 269 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeecc-C------------cccccC---C-CCCCCHHHHH
Confidence 34689999999999999999999999999999864 88887532 0 011111 0 1135677899
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+++.++++++++.. +++++|+.++..+ +.|.|.+.++ .+ +.||.||+||| +.+..|++||.+.|
T Consensus 270 ~~l~~~~~~~gv~i--~~~~~V~~I~~~~--~~~~V~~~~g-------~~-i~a~~vViAtG--~~~r~~~ipG~~~~-- 333 (517)
T PRK15317 270 AALEEHVKEYDVDI--MNLQRASKLEPAA--GLIEVELANG-------AV-LKAKTVILATG--ARWRNMNVPGEDEY-- 333 (517)
T ss_pred HHHHHHHHHCCCEE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEcCEEEECCC--CCcCCCCCCCHHHh--
Confidence 99999999998765 8899999998754 6788887654 46 89999999999 66777889998777
Q ss_pred CCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+..++.....+.....+++|+|||+|++|+|+|..|+..+.+|+++.+.+
T Consensus 334 ----~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 334 ----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred ----cCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 666666665555555678999999999999999999999999999999987
No 11
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=6.6e-24 Score=175.47 Aligned_cols=278 Identities=18% Similarity=0.171 Sum_probs=185.1
Q ss_pred cCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCce-EEecc---cccccCCCCCCCCCCCCCC
Q 022182 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRL-RLHLA---KQFCQLPHLPFPSSYPMFV 78 (301)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~ 78 (301)
....+|+.|||||..|+++|++++..|.++.++|..-.+||++-. .+-|.. ..+.+ ..+.+...+-|+.....-.
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 345789999999999999999999999999999998788886543 233322 11211 1122222333443333344
Q ss_pred CHHHHHHHHHHHHHHhC-CCceeeeCcEEEEEEEcC---CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDE---ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~---~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
++..+.+..++|+.+++ +......+..|.-++-.. +.+...|...++ .... |+++++++||| ++|.+|
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~-----~~~~-Ytak~iLIAtG--g~p~~P 168 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDG-----TKIV-YTAKHILIATG--GRPIIP 168 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCC-----eeEE-EecceEEEEeC--CccCCC
Confidence 66677776666666552 211112233343332111 123445555554 2256 89999999999 899999
Q ss_pred CCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHH
Q 022182 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL 234 (301)
Q Consensus 155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~ 234 (301)
.+||.+. -+.|..+.+ .+..+++++|||+|++|+|+|..++.+|.+++++.|.+ .+|..++..++..+
T Consensus 169 nIpG~E~----------gidSDgff~-Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~-kvLR~FD~~i~~~v 236 (478)
T KOG0405|consen 169 NIPGAEL----------GIDSDGFFD-LEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQE-KVLRGFDEMISDLV 236 (478)
T ss_pred CCCchhh----------ccccccccc-hhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecc-hhhcchhHHHHHHH
Confidence 9999874 266666666 44457999999999999999999999999999999999 78999999888888
Q ss_pred hhcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCCcc----eeeccCCCceEEccchhhhh-----hcCeEEEeeC
Q 022182 235 FKYVPFGWVDTLMVMLSRLVYGDLSKYGIPKPREGPF----FMKAAYGKYPVIDAGTCEKI-----KSGQIQVINY 301 (301)
Q Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i-----~~g~i~v~~~ 301 (301)
.+.|..++++...++....+....+...+.....|.+ .+..+.|+.|.+...-++++ .+|.|.|..|
T Consensus 237 ~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY 312 (478)
T KOG0405|consen 237 TEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY 312 (478)
T ss_pred HHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc
Confidence 8888888877766665555543333221111222222 22345678887776666663 3688888765
No 12
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.90 E-value=1.8e-22 Score=186.65 Aligned_cols=174 Identities=21% Similarity=0.381 Sum_probs=133.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.|||+||||||+|+++|..|++.|++|+|+|++ .+||.+.... ....++. ....++.++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~----------~i~~~pg-------~~~~~~~~l~~~ 65 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITS----------EVVNYPG-------ILNTTGPELMQE 65 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecc----------ccccCCC-------CcCCCHHHHHHH
Confidence 589999999999999999999999999999996 5676643210 0001111 112356688889
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~ 166 (301)
+.+.++++++.. .+++|+.++.++ ..+.|.+.+ .. +.+++||+||| +.|..|++||.+.+
T Consensus 66 l~~~~~~~gv~~---~~~~V~~i~~~~--~~~~V~~~~--------g~-~~a~~lVlATG--a~p~~~~ipG~~~~---- 125 (555)
T TIGR03143 66 MRQQAQDFGVKF---LQAEVLDVDFDG--DIKTIKTAR--------GD-YKTLAVLIATG--ASPRKLGFPGEEEF---- 125 (555)
T ss_pred HHHHHHHcCCEE---eccEEEEEEecC--CEEEEEecC--------CE-EEEeEEEECCC--CccCCCCCCCHHHh----
Confidence 998999888764 477888887644 456676644 35 78899999999 67888999998666
Q ss_pred CCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 167 TGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 167 ~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
.+..++.....+.....+++++|||+|++|+|+|..|.+.|.+|++++|.+.
T Consensus 126 --~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 126 --TGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred --CCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 5555555555444556789999999999999999999999999999999883
No 13
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.90 E-value=5.5e-23 Score=187.13 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=135.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEecc-cccccCCCCC-C-CCCCCCCCCHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLA-KQFCQLPHLP-F-PSSYPMFVSRA 81 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~ 81 (301)
..|||+||||||+|+++|..|++.|.+|+|||+.+.+||+|.. .+.|...+... ..+..+...+ + .......++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 4589999999999999999999999999999998888987743 33333221110 0000000000 0 00011233455
Q ss_pred HHHHHHHH-----------HHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIEHLDH-----------YVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~~l~~-----------~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++.++.+. ..++.+++. +.+ ++..++ ...++|...++. ... +.||+||+||| +.
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g~-----~~~-~~~d~lviATG--s~ 148 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDL--IQG-RARFVD----PHTVEVECPDGE-----VET-LTADKIVIATG--SR 148 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEE--EEE-EEEEec----CCEEEEEeCCCc-----eEE-EEcCEEEEcCC--CC
Confidence 55554433 233334332 332 233332 244666654431 146 89999999999 78
Q ss_pred CCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHH
Q 022182 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (301)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 230 (301)
|..|++++.+. ..++++.+... ....+++++|||+|.+|+|+|..|++.|.+|+++++++ .++|..+.++
T Consensus 149 p~~p~~~~~~~--------~~v~~~~~~~~-~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~ 218 (461)
T PRK05249 149 PYRPPDVDFDH--------PRIYDSDSILS-LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD-RLLSFLDDEI 218 (461)
T ss_pred CCCCCCCCCCC--------CeEEcHHHhhc-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCCcCCHHH
Confidence 88887666432 12444444433 23357999999999999999999999999999999998 7888877776
Q ss_pred HHHHhhcCCHHHH
Q 022182 231 GVVLFKYVPFGWV 243 (301)
Q Consensus 231 ~~~~~~~l~~~~~ 243 (301)
...+.+.+....+
T Consensus 219 ~~~l~~~l~~~gI 231 (461)
T PRK05249 219 SDALSYHLRDSGV 231 (461)
T ss_pred HHHHHHHHHHcCC
Confidence 6665554433333
No 14
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.90 E-value=5.4e-22 Score=182.24 Aligned_cols=176 Identities=19% Similarity=0.290 Sum_probs=134.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...+||+||||||+|+++|..|++.|++|+|++. .+||.+... . . +..+... .+....++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~-~-~--------~~~~~~~-------~~~~~~~l~ 270 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDT-V-G--------IENLISV-------PYTTGSQLA 270 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccC-c-C--------ccccccc-------CCCCHHHHH
Confidence 3468999999999999999999999999999975 478776431 0 0 0001100 123567888
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+++.+++++++++. +.+++|+.++.++ +.+.+++.++ .. +.||++|+||| +.|..|++||...+
T Consensus 271 ~~l~~~l~~~gv~i--~~~~~V~~I~~~~--~~~~v~~~~g-------~~-i~~d~lIlAtG--a~~~~~~ipG~~~~-- 334 (515)
T TIGR03140 271 ANLEEHIKQYPIDL--MENQRAKKIETED--GLIVVTLESG-------EV-LKAKSVIVATG--ARWRKLGVPGEKEY-- 334 (515)
T ss_pred HHHHHHHHHhCCeE--EcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEEECCC--CCcCCCCCCCHHHc--
Confidence 88888888888766 8889999998654 5677877654 46 89999999999 66777889987555
Q ss_pred CCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 165 SATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+..++.....+.....+++|+|||+|++|+|+|..|++.+.+||++++.+
T Consensus 335 ----~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 335 ----IGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred ----CCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 444444443333344568999999999999999999999999999999887
No 15
>PLN02507 glutathione reductase
Probab=99.89 E-value=8.2e-24 Score=193.10 Aligned_cols=212 Identities=15% Similarity=0.112 Sum_probs=133.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEec---------CCCCCcccC-CCCCCceEEeccccc----ccCCCCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER---------ENCYASIWK-KYSYDRLRLHLAKQF----CQLPHLPFPS 72 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~---------~~~~gg~w~-~~~~~~~~~~~~~~~----~~~~~~~~~~ 72 (301)
+|||+||||||+|+.+|.+|+++|.+|+|+|+ ...+||+|. ..++|...+...... .....+.+..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~ 104 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEI 104 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 58999999999999999999999999999996 356888764 445554433211111 0001111100
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-----------hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEE
Q 022182 73 SYPMFVSRAQFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (301)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~v 141 (301)
......+..++.++....+.+ .+++. ...++..++. ..+.|+..++. ..+ +.||+|
T Consensus 105 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~---i~g~a~~vd~----~~v~V~~~~g~-----~~~-~~~d~L 171 (499)
T PLN02507 105 NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKL---YEGEGKIVGP----NEVEVTQLDGT-----KLR-YTAKHI 171 (499)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE---EEEEEEEecC----CEEEEEeCCCc-----EEE-EEcCEE
Confidence 001123445555444333332 23221 2223333322 45667665541 146 889999
Q ss_pred EEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCce
Q 022182 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (301)
Q Consensus 142 VlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 221 (301)
|+||| +.|..|++||.+.. .++.+... ....+++++|||+|.+|+|+|..+.+.|.+|++++|.+ .
T Consensus 172 IIATG--s~p~~p~ipG~~~~----------~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ 237 (499)
T PLN02507 172 LIATG--SRAQRPNIPGKELA----------ITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE-L 237 (499)
T ss_pred EEecC--CCCCCCCCCCccce----------echHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC-C
Confidence 99999 78888889886431 22222222 12236899999999999999999999999999999988 6
Q ss_pred EeehhhHHHHHHHhhcCCHHHHHH
Q 022182 222 VLSREMVYLGVVLFKYVPFGWVDT 245 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~ 245 (301)
+++.++.++...+.+.|....++.
T Consensus 238 ~l~~~d~~~~~~l~~~l~~~GI~i 261 (499)
T PLN02507 238 PLRGFDDEMRAVVARNLEGRGINL 261 (499)
T ss_pred cCcccCHHHHHHHHHHHHhCCCEE
Confidence 777777776666655554444443
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.89 E-value=6.4e-23 Score=185.43 Aligned_cols=209 Identities=17% Similarity=0.194 Sum_probs=131.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEeccccc----ccCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQF----CQLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|+++|..|++.|.+|+|+|+. .+||++. ..+.|...+...... .....+.++.......+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999999999999999996 4777654 344444221111100 0111111111101113444
Q ss_pred HHHHHHHHHHH-----------HhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~~l~~~~~-----------~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++.++.+++++ ..+++. +.++.+. .. ..+|.+. + .. +.||+||+||| +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g~~~~----~~---~~~v~v~-~-------~~-~~~d~vIiAtG--s~ 140 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDV--IFGHARF----TK---DGTVEVN-G-------RD-YTAPHILIATG--GK 140 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEEEEE----cc---CCEEEEC-C-------EE-EEeCEEEEecC--CC
Confidence 55444333332 223332 4443221 11 1234442 2 56 89999999999 78
Q ss_pred CCCC-CCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 151 PFTP-DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 151 p~~p-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
|..| ++||.+.. +++..+.. ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .+++.++.+
T Consensus 141 p~~p~~i~g~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~il~~~d~~ 208 (450)
T TIGR01421 141 PSFPENIPGAELG----------TDSDGFFA-LEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE-RVLRSFDSM 208 (450)
T ss_pred CCCCCCCCCCcee----------EcHHHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CCCcccCHH
Confidence 8888 88886421 22222222 12236899999999999999999999999999999998 677887777
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 022182 230 LGVVLFKYVPFGWVDTLMV 248 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~ 248 (301)
+...+.+.|....++...+
T Consensus 209 ~~~~~~~~l~~~gI~i~~~ 227 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKL 227 (450)
T ss_pred HHHHHHHHHHHcCCEEEcC
Confidence 7766666555555544433
No 17
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=1.4e-22 Score=184.49 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=137.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCC-CCceEEeccccc-ccCCCCCCCCCC---CCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-YDRLRLHLAKQF-CQLPHLPFPSSY---PMFVS 79 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 79 (301)
..+|||+||||||+|+++|..|++.|.+|+|||+. .+||+|.... .|...+...... ......++.... ..-++
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 82 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVD 82 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccC
Confidence 46799999999999999999999999999999986 5888876532 222111100000 000111110000 11235
Q ss_pred HHHHHHHHHHHHHHhCC-----------CceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 80 RAQFIEHLDHYVSHFNI-----------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 80 ~~~~~~~l~~~~~~~~~-----------~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
+.++.++.++.+..+.- .+. ....++..++ ...|.|++.++. ..+ +.||+||+|||
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~~g~v~~id----~~~~~V~~~~g~-----~~~-~~~d~lViATG-- 149 (468)
T PRK14694 83 RSALLAQQQARVEELRESKYQSILRENAAIT-VLNGEARFVD----ERTLTVTLNDGG-----EQT-VHFDRAFIGTG-- 149 (468)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHhcCCCeE-EEEEEEEEec----CCEEEEEecCCC-----eEE-EECCEEEEeCC--
Confidence 66676666555443210 111 1223455553 255888876642 146 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
+.|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++.+. .++|..+.
T Consensus 150 s~p~~p~i~G~~~~--------~~~~~~~~~~-l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~--~~l~~~~~ 218 (468)
T PRK14694 150 ARPAEPPVPGLAET--------PYLTSTSALE-LDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS--RVLSQEDP 218 (468)
T ss_pred CCCCCCCCCCCCCC--------ceEcchhhhc-hhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC--CCCCCCCH
Confidence 88999999997643 2344433222 2234689999999999999999999999999999873 56777666
Q ss_pred HHHHHHhhcCCHHHHH
Q 022182 229 YLGVVLFKYVPFGWVD 244 (301)
Q Consensus 229 ~~~~~~~~~l~~~~~~ 244 (301)
++...+.+.|....++
T Consensus 219 ~~~~~l~~~l~~~GI~ 234 (468)
T PRK14694 219 AVGEAIEAAFRREGIE 234 (468)
T ss_pred HHHHHHHHHHHhCCCE
Confidence 6665555544444333
No 18
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.89 E-value=5.4e-23 Score=178.25 Aligned_cols=204 Identities=27% Similarity=0.378 Sum_probs=127.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCCCcccCCCC-CCceEEecccccccCCCCCCCCC-----------
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLAKQFCQLPHLPFPSS----------- 73 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~gg~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------- 73 (301)
.+|+++||.||++|++|..|...+ .++.++|+.+.+. |+..+ .++..+..+-. .++-.+..|..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~--Wh~gmll~~~~~q~~fl-~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFS--WHPGMLLPGARMQVSFL-KDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS----TTGGG--SS-B-SS-TT-SSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCC--cCCccCCCCCccccccc-cccCcCcCCCCcccHHHHHHHc
Confidence 479999999999999999999886 8999999987654 87653 34443333211 11111111111
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCC--CcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 74 ---------YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT--NMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 74 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~--~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
-..+|++.++.+|+++.+++++... +++++|++|+..... ..|.|.+.+..+ .... +.|++||
T Consensus 79 ~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v--~~~~~V~~I~~~~~~~~~~~~V~~~~~~g---~~~~-~~ar~vV 152 (341)
T PF13434_consen 79 GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQV--RYGSEVTSIEPDDDGDEDLFRVTTRDSDG---DGET-YRARNVV 152 (341)
T ss_dssp T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTE--EESEEEEEEEEEEETTEEEEEEEEEETTS----EEE-EEESEEE
T ss_pred CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCce--EECCEEEEEEEecCCCccEEEEEEeecCC---CeeE-EEeCeEE
Confidence 0245899999999999999998545 899999999987643 358998864222 2267 8999999
Q ss_pred EecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCC--CCCCCCeEEEECCCcCHHHHHHHHHhccC--eEEEEEec
Q 022182 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAA--KTSLVVRS 218 (301)
Q Consensus 143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~--~v~~~~r~ 218 (301)
+|+| ..|.+|+.-..... ...++|+.++... ....+++|+|||+|.||+|++..|.+.+. +|+++.|+
T Consensus 153 la~G--~~P~iP~~~~~~~~------~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 153 LATG--GQPRIPEWFQDLPG------SPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp E------EE---GGGGGGTT-------TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred ECcC--CCCCCCcchhhcCC------CCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 9999 88888864221111 3579999988653 25568999999999999999999999875 79999999
Q ss_pred CceEeehhhH
Q 022182 219 PVHVLSREMV 228 (301)
Q Consensus 219 ~~~~~~~~~~ 228 (301)
+ .+.|.++.
T Consensus 225 ~-~~~~~d~s 233 (341)
T PF13434_consen 225 P-GFFPMDDS 233 (341)
T ss_dssp S-S-EB----
T ss_pred C-ccCCCccc
Confidence 8 67776654
No 19
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.89 E-value=1.8e-22 Score=182.55 Aligned_cols=205 Identities=19% Similarity=0.217 Sum_probs=130.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC-CCCcccCC-CCCCceEEecccccccCCCCCCCCCCCC-CCCHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKK-YSYDRLRLHLAKQFCQLPHLPFPSSYPM-FVSRAQF 83 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~-~~gg~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (301)
.|||+||||||+|+++|..|+++|.+|+|+|+.+ .+||+|.. .+.+...+.... . ...++.. ......+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~------~--~~~~~~~~~~~~~~~ 74 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA------Q--QHTDFVRAIQRKNEV 74 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh------c--cCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999976 47887653 222221100000 0 0001100 0011122
Q ss_pred HHHHHHH-----HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCC
Q 022182 84 IEHLDHY-----VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (301)
Q Consensus 84 ~~~l~~~-----~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g 158 (301)
.++++.. .+..+++. . ..++..++ .+.+.|...++ . .+ +.||+||+||| +.|..|++||
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~--~-~g~~~~i~----~~~~~v~~~~g-----~-~~-~~~d~lviATG--s~p~~p~i~G 138 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDV--I-DGQAEFIN----NHSLRVHRPEG-----N-LE-IHGEKIFINTG--AQTVVPPIPG 138 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEE--E-EEEEEEec----CCEEEEEeCCC-----e-EE-EEeCEEEEcCC--CcCCCCCCCC
Confidence 2222211 11113221 2 22344442 24466665443 1 36 89999999999 8888899999
Q ss_pred ccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhhcC
Q 022182 159 LCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYV 238 (301)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~l 238 (301)
.+.+ .+ ++++..+.. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++|..+.++...+.+.+
T Consensus 139 ~~~~------~~-v~~~~~~~~-~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~l~~~l 209 (441)
T PRK08010 139 ITTT------PG-VYDSTGLLN-LKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS-LFLPREDRDIADNIATIL 209 (441)
T ss_pred ccCC------CC-EEChhHhhc-ccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCCCcCHHHHHHHHHHH
Confidence 8654 43 444444433 23356899999999999999999999999999999988 788887766666555544
Q ss_pred CHHHHH
Q 022182 239 PFGWVD 244 (301)
Q Consensus 239 ~~~~~~ 244 (301)
....++
T Consensus 210 ~~~gV~ 215 (441)
T PRK08010 210 RDQGVD 215 (441)
T ss_pred HhCCCE
Confidence 444443
No 20
>PRK06116 glutathione reductase; Validated
Probab=99.89 E-value=1.8e-23 Score=189.58 Aligned_cols=204 Identities=21% Similarity=0.220 Sum_probs=128.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEeccccc----cc-CCCCCCCCCCCCCCCH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQF----CQ-LPHLPFPSSYPMFVSR 80 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~ 80 (301)
.|||+||||||+|+++|..|+++|++|+|+|+. .+||+|. ..+.|...+...... .. .+.+.+... ....+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVT-ENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCC-CCCcCH
Confidence 589999999999999999999999999999986 6788654 334443211111000 00 000001000 011233
Q ss_pred HHHHHHHHHH-----------HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
..+.++.++. ....+++. ..+ +++.++ ..+|++ ++ .+ +.||+||+||| +
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~v~------~~~v~~-~g-------~~-~~~d~lViATG--s 141 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDL--IEG-FARFVD------AHTVEV-NG-------ER-YTADHILIATG--G 141 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc------CCEEEE-CC-------EE-EEeCEEEEecC--C
Confidence 4444433222 23334433 333 344442 234555 32 56 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
.|..|++||.+. ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|.+ .+++..+.+
T Consensus 142 ~p~~p~i~g~~~----------~~~~~~~~~-~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~ 209 (450)
T PRK06116 142 RPSIPDIPGAEY----------GITSDGFFA-LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD-APLRGFDPD 209 (450)
T ss_pred CCCCCCCCCcce----------eEchhHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CCccccCHH
Confidence 888898988642 233333332 22246899999999999999999999999999999988 677766666
Q ss_pred HHHHHhhcCCHHHHH
Q 022182 230 LGVVLFKYVPFGWVD 244 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (301)
+...+.+.+....++
T Consensus 210 ~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 210 IRETLVEEMEKKGIR 224 (450)
T ss_pred HHHHHHHHHHHCCcE
Confidence 655555444333333
No 21
>PRK14727 putative mercuric reductase; Provisional
Probab=99.89 E-value=1.7e-22 Score=184.13 Aligned_cols=223 Identities=18% Similarity=0.186 Sum_probs=135.9
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC-CCCceEEeccccc----ccCCCCCCCCCCC
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQF----CQLPHLPFPSSYP 75 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (301)
|...+.++||+|||||++|+++|..|+++|.+|+++|+...+||+|... +.|...+..+... ...+.+.++...+
T Consensus 10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 89 (479)
T PRK14727 10 MTRSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAP 89 (479)
T ss_pred cccCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCC
Confidence 3344567999999999999999999999999999999988899988754 3443322111111 0111111111111
Q ss_pred CCCCHHHHHHHHHHHHHHhCC---CceeeeCcEEEEE----EEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 76 MFVSRAQFIEHLDHYVSHFNI---GPSIRYQRSVESA----SYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 76 ~~~~~~~~~~~l~~~~~~~~~---~~~i~~~~~V~~i----~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
-.+...+..+......+..- ...+..+..|+-+ .+.+ .+.+.|...++. ..+ +.||+||+|||
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~-~~~v~v~~~~g~-----~~~-~~~d~lViATG-- 159 (479)
T PRK14727 90 -SIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD-GNTLVVRLHDGG-----ERV-LAADRCLIATG-- 159 (479)
T ss_pred -ccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec-CCEEEEEeCCCc-----eEE-EEeCEEEEecC--
Confidence 12344444444333322110 0000001112211 1222 245666655431 146 89999999999
Q ss_pred CCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 149 TNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 149 ~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
+.|..|++||.+.. ..+++.+... ....+++++|||+|.+|+|+|..|.+.|.+||++++. .+++..+.
T Consensus 160 s~p~~p~i~G~~~~--------~~~~~~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~--~~l~~~d~ 228 (479)
T PRK14727 160 STPTIPPIPGLMDT--------PYWTSTEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS--TLLFREDP 228 (479)
T ss_pred CCCCCCCCCCcCcc--------ceecchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC--CCCCcchH
Confidence 78999999997532 2233322222 1234689999999999999999999999999999884 46777776
Q ss_pred HHHHHHhhcCCHHHHH
Q 022182 229 YLGVVLFKYVPFGWVD 244 (301)
Q Consensus 229 ~~~~~~~~~l~~~~~~ 244 (301)
++...+.+.+....++
T Consensus 229 ~~~~~l~~~L~~~GV~ 244 (479)
T PRK14727 229 LLGETLTACFEKEGIE 244 (479)
T ss_pred HHHHHHHHHHHhCCCE
Confidence 6666665555444444
No 22
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.89 E-value=3.1e-22 Score=182.01 Aligned_cols=208 Identities=16% Similarity=0.097 Sum_probs=130.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEec-ccccc---cCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHL-AKQFC---QLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|+.+|..|++.|.+|+|+|+.+.+||+|. ..+.|...+.. ...+. ....+-+... ....+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFG-EPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccC-CCCcCHH
Confidence 58999999999999999999999999999999877888654 44555432211 10000 0111101000 1123445
Q ss_pred HHHHHHHHHHHH-----------hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+.++.+..+++ .+++. +.+ .+..++ .....|...++ +..+ +.||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~--~~g-~a~~~~----~~~v~v~~~~g-----~~~~-~~~d~lViATG--s~ 147 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTV--VNG-LGKFTG----GNTLEVTGEDG-----KTTV-IEFDNAIIAAG--SR 147 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCC-----ceEE-EEcCEEEEeCC--CC
Confidence 555555443332 24432 322 232221 13344444332 1146 89999999999 77
Q ss_pred CCC-CCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 151 PFT-PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 151 p~~-p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
|.. |.+++.. ..++.+.+.... ...+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++|..+.+
T Consensus 148 p~~~p~~~~~~---------~~v~~~~~~~~~-~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~il~~~d~~ 216 (471)
T PRK06467 148 PIQLPFIPHDD---------PRIWDSTDALEL-KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD-QVIPAADKD 216 (471)
T ss_pred CCCCCCCCCCC---------CcEEChHHhhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC-CCCCcCCHH
Confidence 763 4444422 124444433332 2346899999999999999999999999999999998 788988877
Q ss_pred HHHHHhhcCCHH
Q 022182 230 LGVVLFKYVPFG 241 (301)
Q Consensus 230 ~~~~~~~~l~~~ 241 (301)
+...+.+.|...
T Consensus 217 ~~~~~~~~l~~~ 228 (471)
T PRK06467 217 IVKVFTKRIKKQ 228 (471)
T ss_pred HHHHHHHHHhhc
Confidence 777666655544
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=2.6e-22 Score=182.72 Aligned_cols=206 Identities=18% Similarity=0.205 Sum_probs=129.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc-CCCCCCceEEecccccc----cCCCCCCCCCCCCCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (301)
..|||+||||||+|+++|..|+++|++|+|+|+.. +||+| +..+.|...+....... ....+.+... ...++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAE-NVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccC-CCccCH
Confidence 46899999999999999999999999999999987 78865 44555543222111111 0111111100 123456
Q ss_pred HHHHHHHHHHHH-----------HhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~~~-----------~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.++.+|.++.++ +.+++. +.+ .++.++. ..++|...++. .+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~--~~g-~~~~~~~----~~~~v~~~~~~------~~-~~~d~lViAtG--s 144 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDI--IRG-EAKLVDP----NTVRVMTEDGE------QT-YTAKNIILATG--S 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEccC----CEEEEecCCCc------EE-EEeCEEEEeCC--C
Confidence 667777554433 334332 333 2333321 33444432211 56 89999999999 6
Q ss_pred CCCCCCCCCccccccCCCCCcc-EEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 150 NPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
.|..| ||.+. .+. ++++.+... ....+++++|||+|.+|+|+|..|.+.|.+||+++|.+ +++|..+.
T Consensus 145 ~p~~~--pg~~~-------~~~~v~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 213 (462)
T PRK06416 145 RPREL--PGIEI-------DGRVIWTSDEALN-LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP-RILPGEDK 213 (462)
T ss_pred CCCCC--CCCCC-------CCCeEEcchHhhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CcCCcCCH
Confidence 66543 45542 232 334433332 22346899999999999999999999999999999998 78887766
Q ss_pred HHHHHHhhcCCH
Q 022182 229 YLGVVLFKYVPF 240 (301)
Q Consensus 229 ~~~~~~~~~l~~ 240 (301)
++...+.+.+..
T Consensus 214 ~~~~~l~~~l~~ 225 (462)
T PRK06416 214 EISKLAERALKK 225 (462)
T ss_pred HHHHHHHHHHHH
Confidence 666555544433
No 24
>PRK06370 mercuric reductase; Validated
Probab=99.88 E-value=1.8e-22 Score=183.55 Aligned_cols=207 Identities=14% Similarity=0.182 Sum_probs=129.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEecccccc----cCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|+++|..|+++|++|+|+|+.. +||.|. ..+.|...+....... ....+.++.......+..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 5899999999999999999999999999999974 566543 3333322111000000 001111110000123455
Q ss_pred HHHHHHHHHHHH-----------h-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 82 QFIEHLDHYVSH-----------F-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 82 ~~~~~l~~~~~~-----------~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.+.++.+..+.+ . +++ ++.++.+. + +..+|++. + .+ +.||+||+||| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~------~~~~v~v~-~-------~~-~~~d~lViATG--s 143 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E------SPNTVRVG-G-------ET-LRAKRIFINTG--A 143 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c------cCCEEEEC-c-------EE-EEeCEEEEcCC--C
Confidence 555555443332 1 222 23333221 1 12334442 2 56 89999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
.|..|++||.+.. .++++.+..+ ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++|..+.+
T Consensus 144 ~p~~p~i~G~~~~--------~~~~~~~~~~-~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~~~~ 213 (463)
T PRK06370 144 RAAIPPIPGLDEV--------GYLTNETIFS-LDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP-RLLPREDED 213 (463)
T ss_pred CCCCCCCCCCCcC--------ceEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-CCCcccCHH
Confidence 8999999997642 2444444433 22347999999999999999999999999999999998 788877666
Q ss_pred HHHHHhhcCCHHHHH
Q 022182 230 LGVVLFKYVPFGWVD 244 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (301)
+...+.+.+....++
T Consensus 214 ~~~~l~~~l~~~GV~ 228 (463)
T PRK06370 214 VAAAVREILEREGID 228 (463)
T ss_pred HHHHHHHHHHhCCCE
Confidence 655554444333333
No 25
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.88 E-value=1e-21 Score=177.55 Aligned_cols=198 Identities=17% Similarity=0.163 Sum_probs=125.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC-CCccc-CCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIW-KKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~-~gg~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
+|||+||||||+|+++|..|+++|.+|+|+|+++. +||++ +..+.|...+..... . ..+..++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~--------~~~~~~~~ 68 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------K--------NLSFEQVM 68 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhh------c--------CCCHHHHH
Confidence 58999999999999999999999999999999864 58754 333232221111000 0 01223333
Q ss_pred HHHHHH-----------HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 85 EHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 85 ~~l~~~-----------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
.+.+.. ..+.+++. +.++ +..+ +..+|.+..+++ ..+ +.||+||+||| +.|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~gV~~--~~g~-~~~~------~~~~v~v~~~~~----~~~-~~~d~vViATG--s~~~~ 132 (438)
T PRK07251 69 ATKNTVTSRLRGKNYAMLAGSGVDL--YDAE-AHFV------SNKVIEVQAGDE----KIE-LTAETIVINTG--AVSNV 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-EEEc------cCCEEEEeeCCC----cEE-EEcCEEEEeCC--CCCCC
Confidence 332222 22223322 2222 2111 112344433211 156 89999999999 77888
Q ss_pred CCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHH
Q 022182 154 PDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVV 233 (301)
Q Consensus 154 p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~ 233 (301)
|++||.+.. . .++++.+... ....+++++|||+|.+|+|+|..+++.|.+|++++|++ .++|+.+.++...
T Consensus 133 p~i~G~~~~------~-~v~~~~~~~~-~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~ 203 (438)
T PRK07251 133 LPIPGLADS------K-HVYDSTGIQS-LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS-TILPREEPSVAAL 203 (438)
T ss_pred CCCCCcCCC------C-cEEchHHHhc-chhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-ccCCCCCHHHHHH
Confidence 999997543 2 2444444333 22347899999999999999999999999999999998 7888776666555
Q ss_pred HhhcCCHHHH
Q 022182 234 LFKYVPFGWV 243 (301)
Q Consensus 234 ~~~~l~~~~~ 243 (301)
+.+.+....+
T Consensus 204 ~~~~l~~~GI 213 (438)
T PRK07251 204 AKQYMEEDGI 213 (438)
T ss_pred HHHHHHHcCC
Confidence 4443333333
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.88 E-value=1.9e-22 Score=183.47 Aligned_cols=211 Identities=17% Similarity=0.206 Sum_probs=132.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEecccccccCCC-CCCCCC-CCCCCCHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFCQLPH-LPFPSS-YPMFVSRAQFI 84 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 84 (301)
|||+||||||+|+++|..|+++|.+|+|+|+.. +||+|.. .+.|...+........+.. ..+... ....++..++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 699999999999999999999999999999976 7777643 3333322111111111100 000000 01122333444
Q ss_pred HHHHHH------------HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 85 EHLDHY------------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 85 ~~l~~~------------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
.+.++. .++++++. ..+ ++..+ +..+|.+.++. .. +.+|+||+||| +.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~--~~g-~~~~~------~~~~v~v~~g~------~~-~~~~~lIiATG--s~p~ 141 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDY--LRG-RARFK------DPKTVKVDLGR------EV-RGAKRFLIATG--ARPA 141 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEE--EEE-EEEEc------cCCEEEEcCCe------EE-EEeCEEEEcCC--CCCC
Confidence 333322 33334332 222 22222 12456554421 45 78999999999 7889
Q ss_pred CCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHH
Q 022182 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (301)
Q Consensus 153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~ 232 (301)
.|++||.+.+ .++++.+..+. ...+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++|..+.++..
T Consensus 142 ~p~i~G~~~~--------~~~~~~~~~~~-~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~ 211 (463)
T TIGR02053 142 IPPIPGLKEA--------GYLTSEEALAL-DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSD-RLLPREEPEISA 211 (463)
T ss_pred CCCCCCcccC--------ceECchhhhCc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-cCCCccCHHHHH
Confidence 9999997653 24544444332 2236899999999999999999999999999999998 688887776666
Q ss_pred HHhhcCCHHHHHHHH
Q 022182 233 VLFKYVPFGWVDTLM 247 (301)
Q Consensus 233 ~~~~~l~~~~~~~~~ 247 (301)
.+.+.+....++...
T Consensus 212 ~l~~~l~~~gV~i~~ 226 (463)
T TIGR02053 212 AVEEALAEEGIEVVT 226 (463)
T ss_pred HHHHHHHHcCCEEEc
Confidence 555554444444333
No 27
>PRK13748 putative mercuric reductase; Provisional
Probab=99.88 E-value=7.4e-22 Score=183.88 Aligned_cols=214 Identities=16% Similarity=0.149 Sum_probs=133.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEeccccc-ccCCCCCCCCCC---CCCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF-CQLPHLPFPSSY---PMFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~ 80 (301)
..|||+||||||+|+++|..|++.|.+|+|+|++ .+||+|.. .+.|+..+..+... ......++...+ ....+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3689999999999999999999999999999998 78988764 33443322111110 000011110010 112345
Q ss_pred HHHHHHHHHHHHHhCC-----------CceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHYVSHFNI-----------GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~-----------~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
..+.++.+....++.- .+. ....++..++ ...+.|...++. ..+ +.||+||+||| +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~~~----~~~~~v~~~~g~-----~~~-~~~d~lviAtG--s 242 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAIT-VLHGEARFKD----DQTLIVRLNDGG-----ERV-VAFDRCLIATG--A 242 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeE-EEEEEEEEec----CCEEEEEeCCCc-----eEE-EEcCEEEEcCC--C
Confidence 5666555444332210 111 1122333332 244666654431 146 89999999999 8
Q ss_pred CCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
.|..|++||.+.. .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|. .+++.++.+
T Consensus 243 ~p~~p~i~g~~~~--------~~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~--~~l~~~d~~ 311 (561)
T PRK13748 243 SPAVPPIPGLKET--------PYWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS--TLFFREDPA 311 (561)
T ss_pred CCCCCCCCCCCcc--------ceEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC--ccccccCHH
Confidence 8999999997642 1233322211 2234689999999999999999999999999999985 367777767
Q ss_pred HHHHHhhcCCHHHHH
Q 022182 230 LGVVLFKYVPFGWVD 244 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (301)
++..+.+.|....++
T Consensus 312 ~~~~l~~~l~~~gI~ 326 (561)
T PRK13748 312 IGEAVTAAFRAEGIE 326 (561)
T ss_pred HHHHHHHHHHHCCCE
Confidence 766665555444444
No 28
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=1.1e-21 Score=178.80 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=132.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC-CCCceEEecccccc-c---CCCCCCCCCCCCCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-SYDRLRLHLAKQFC-Q---LPHLPFPSSYPMFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 80 (301)
..|||+||||||+|+++|..|+++|.+|+|+|+. .+||+|... +.|...+....... . ...+-.... ....+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~ 80 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVS-GPALDF 80 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCC-CCccCH
Confidence 3689999999999999999999999999999996 688887543 33332211111000 0 000000000 011233
Q ss_pred HHHHHHHHHH-----------HHHhCCCceeeeCcEEEEEEEc---CCCCcEEEEEeecCCCCceeEEEEeeCEEEEecC
Q 022182 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASG 146 (301)
Q Consensus 81 ~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG 146 (301)
..+.++.++. .++.+++. .. ..++.++.+ +..+.+.|.+.++. ..+ +.||+||+|||
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~--~~-g~a~~i~~~~~~~~~~~~~v~~~~g~-----~~~-~~~d~lViATG 151 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKIDV--FH-GIGRILGPSIFSPMPGTVSVETETGE-----NEM-IIPENLLIATG 151 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEE--EE-EEEEEeCCCCCcCCceEEEEEeCCCc-----eEE-EEcCEEEEeCC
Confidence 3444332222 23334442 33 345555432 11235667665431 156 89999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCcc-EEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeeh
Q 022182 147 ETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR 225 (301)
Q Consensus 147 ~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~ 225 (301)
+.|..| |+.. + .+. ++++.+... ....+++++|||+|.+|+|+|..|++.|.+||+++|.+ .++|.
T Consensus 152 --s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~-~il~~ 218 (472)
T PRK05976 152 --SRPVEL--PGLP-F------DGEYVISSDEALS-LETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD-RILPT 218 (472)
T ss_pred --CCCCCC--CCCC-C------CCceEEcchHhhC-ccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC-ccCCc
Confidence 666543 3332 1 222 444444333 22346899999999999999999999999999999998 78888
Q ss_pred hhHHHHHHHhhcCCHHHHHHH
Q 022182 226 EMVYLGVVLFKYVPFGWVDTL 246 (301)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~ 246 (301)
.+.++...+.+.|....++..
T Consensus 219 ~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 219 EDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCHHHHHHHHHHHHhcCCEEE
Confidence 777776666555544444433
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=4e-21 Score=174.84 Aligned_cols=215 Identities=16% Similarity=0.168 Sum_probs=133.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEeccc----ccccCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAK----QFCQLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 81 (301)
.|||+||||||+|+++|..|++.|.+|+|+|+ ..+||+|.. .+.|...+.... ....++.+..... ....+..
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~-~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD-GPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC-CCccCHH
Confidence 48999999999999999999999999999999 678988764 222221111000 0001111111111 1345777
Q ss_pred HHHHHHHHHHHHhCCCc-eee-eCcEEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCC
Q 022182 82 QFIEHLDHYVSHFNIGP-SIR-YQRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (301)
Q Consensus 82 ~~~~~l~~~~~~~~~~~-~i~-~~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g 158 (301)
++.+++++.++.+.... .-. ....|.-+.... ..+.+++.+ ++ .+ +.||+||+||| +. .|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~-------~~-~~~d~lIiATG--s~--~p~ipg 147 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NG-------ER-IEAKNIVIATG--SR--VPPIPG 147 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-Cc-------EE-EEeCEEEEeCC--CC--CCCCCC
Confidence 88888877766542211 000 001111111000 001234444 22 56 89999999999 44 456666
Q ss_pred ccccccCCCCCc-cEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhhc
Q 022182 159 LCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY 237 (301)
Q Consensus 159 ~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (301)
.... .+ .++++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|.+ +++|..+.++...+.+.
T Consensus 148 ~~~~------~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~~~~~~~~~ 219 (460)
T PRK06292 148 VWLI------LGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD-RILPLEDPEVSKQAQKI 219 (460)
T ss_pred Cccc------CCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC-CcCcchhHHHHHHHHHH
Confidence 5432 22 2444333322 23457999999999999999999999999999999998 78888777777666665
Q ss_pred CCHHHHHH
Q 022182 238 VPFGWVDT 245 (301)
Q Consensus 238 l~~~~~~~ 245 (301)
|... ++.
T Consensus 220 l~~~-I~i 226 (460)
T PRK06292 220 LSKE-FKI 226 (460)
T ss_pred Hhhc-cEE
Confidence 5554 443
No 30
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.87 E-value=8.4e-22 Score=178.26 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=125.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEecccc----cccCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQ----FCQLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|+++|..++++|++|+|+|+. .+||++. ..+.|+..+..... +..++.+..... ....+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG-KARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC-CCCcCHH
Confidence 589999999999999999999999999999985 6788654 34444432211110 011111111100 0112333
Q ss_pred HHHH-----------HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIE-----------HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~-----------~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+.+ +++...+..+++. .. .++..++. ....+. .++ .. +.||+||+||| +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~v~~----~~v~v~-~~g-------~~-~~~d~lIiATG--s~ 141 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVEL--LE-GRARLVGP----NTVEVL-QDG-------TT-YTAKKILIAVG--GR 141 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEE--EE-EEEEEecC----CEEEEe-cCC-------eE-EEcCEEEEecC--Cc
Confidence 3333 3333344445443 33 34555532 223332 222 56 89999999999 88
Q ss_pred CCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHH
Q 022182 151 PFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (301)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 230 (301)
|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|..+.++
T Consensus 142 p~~p~i~G~~~~----------~~~~~~~~-l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~-~~l~~~d~~~ 209 (446)
T TIGR01424 142 PQKPNLPGHELG----------ITSNEAFH-LPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE-LILRGFDDDM 209 (446)
T ss_pred CCCCCCCCccce----------echHHhhc-ccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC-CCCcccCHHH
Confidence 888999886421 22222211 12246899999999999999999999999999999988 6777766665
Q ss_pred HHHHhhcC
Q 022182 231 GVVLFKYV 238 (301)
Q Consensus 231 ~~~~~~~l 238 (301)
...+.+.|
T Consensus 210 ~~~l~~~l 217 (446)
T TIGR01424 210 RALLARNM 217 (446)
T ss_pred HHHHHHHH
Confidence 55544433
No 31
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.86 E-value=6.1e-22 Score=180.96 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=136.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC--------CCCccc-CCCCCCceEEeccccccc-----CCCCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIW-KKYSYDRLRLHLAKQFCQ-----LPHLPFPS 72 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~--------~~gg~w-~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 72 (301)
.|||+||||||+|+++|..|+++|.+|+|+|+.. .+||++ +..++|...+........ ...+.+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~- 83 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK- 83 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC-
Confidence 5899999999999999999999999999999632 378864 444555432211100000 0111111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCceeeeCc---EEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 73 SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQR---SVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~---~V~~i~~~~-~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
.+.-.+..++.+++++.++.++... .... .|+-+.-.. -.+.++|.+.+.+. ... +.||+||+|||
T Consensus 84 -~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~----~~~-i~~d~lIIATG-- 153 (499)
T PTZ00052 84 -TSSSFNWGKLVTTVQNHIRSLNFSY--RTGLRSSKVEYINGLAKLKDEHTVSYGDNSQ----EET-ITAKYILIATG-- 153 (499)
T ss_pred -CCCCcCHHHHHHHHHHHHHHhhHHH--HHHhhhcCcEEEEEEEEEccCCEEEEeeCCC----ceE-EECCEEEEecC--
Confidence 0113567788888888777664332 2222 122221000 01234455443211 156 89999999999
Q ss_pred CCCCCCC-CCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhh
Q 022182 149 TNPFTPD-IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (301)
Q Consensus 149 ~~p~~p~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (301)
+.|..|. +||.+.+ .+.+.+... ....+++++|||+|.+|+|+|..|++.|.+||+++++ .+++.++
T Consensus 154 s~p~~p~~i~G~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~~d 221 (499)
T PTZ00052 154 GRPSIPEDVPGAKEY---------SITSDDIFS-LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFD 221 (499)
T ss_pred CCCCCCCCCCCccce---------eecHHHHhh-hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--cccccCC
Confidence 7888774 8886532 233333322 1224679999999999999999999999999999874 4667777
Q ss_pred HHHHHHHhhcCCHHHHHHHH
Q 022182 228 VYLGVVLFKYVPFGWVDTLM 247 (301)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~ 247 (301)
.++...+.+.|....++.+.
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~ 241 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLE 241 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEc
Confidence 77666666655554444433
No 32
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=4.6e-21 Score=174.46 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=127.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc-CCCCCCceEEecccccc-c----CCCCCCCCCCCCCCCH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW-KKYSYDRLRLHLAKQFC-Q----LPHLPFPSSYPMFVSR 80 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w-~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~ 80 (301)
.|||+||||||+|+++|..|++.|.+|+|+|++. +||++ +..+.|...+....... . ...+... .....+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--cCcccCH
Confidence 5899999999999999999999999999999864 56654 34444432111110000 0 0001010 0112344
Q ss_pred HHHHHHHHHHHHHhCCCceeee-CcEEEEEEEc---CCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRY-QRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI 156 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~-~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~ 156 (301)
..+..+.++..++..-.....+ ...|+.++.. .+...+.|...++. ..+ +.||+||+||| +.|..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~-----~~~-~~~d~lViATG--s~p~~~-- 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGG-----TET-VTFDNAIIATG--SSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCC-----eeE-EEcCEEEEeCC--CCCCCC--
Confidence 4455544443322100000011 1133333311 11233444443321 146 89999999999 667654
Q ss_pred CCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhh
Q 022182 157 RGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK 236 (301)
Q Consensus 157 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (301)
||.+. .+.++.+.+... ....+++++|||+|.+|+|+|..|++.|.+|+++++.+ .++|..+.++...+.+
T Consensus 151 pg~~~-------~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~-~~l~~~d~~~~~~l~~ 221 (466)
T PRK07818 151 PGTSL-------SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD-RALPNEDAEVSKEIAK 221 (466)
T ss_pred CCCCC-------CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC-CcCCccCHHHHHHHHH
Confidence 55432 223444333222 22347899999999999999999999999999999998 7888877777666665
Q ss_pred cCCHHHHHHH
Q 022182 237 YVPFGWVDTL 246 (301)
Q Consensus 237 ~l~~~~~~~~ 246 (301)
.|....++..
T Consensus 222 ~l~~~gV~i~ 231 (466)
T PRK07818 222 QYKKLGVKIL 231 (466)
T ss_pred HHHHCCCEEE
Confidence 5544444433
No 33
>PTZ00058 glutathione reductase; Provisional
Probab=99.86 E-value=7.4e-22 Score=181.24 Aligned_cols=212 Identities=17% Similarity=0.220 Sum_probs=130.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-cCCCCCCceEEeccccccc----CCCCCCCCCCCCCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFCQ----LPHLPFPSSYPMFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 80 (301)
.+|||+|||||++|+++|..+++.|.+|+|+|++ .+||+ .+..+.|...+........ ...+-+.. ..-.+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~--~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDT--QFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCc--cCccCH
Confidence 4689999999999999999999999999999997 46775 3445555443322211111 01111110 011334
Q ss_pred HHHHHHHHHHH-----------HHhCCCceeeeCcE-EEE---EE--------E---cCCCCcEEEE------EeecCCC
Q 022182 81 AQFIEHLDHYV-----------SHFNIGPSIRYQRS-VES---AS--------Y---DEATNMWNVK------ASNLLSP 128 (301)
Q Consensus 81 ~~~~~~l~~~~-----------~~~~~~~~i~~~~~-V~~---i~--------~---~~~~~~~~V~------~~~~~~~ 128 (301)
..+.++.++++ +..+++. ..+.. ..+ +. . ..+.+..+|+ ..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~--~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--- 198 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEY--FEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--- 198 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEE--EEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC---
Confidence 44444443332 2233332 22221 111 00 0 0001122232 1121
Q ss_pred CceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhc
Q 022182 129 GREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH 208 (301)
Q Consensus 129 ~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~ 208 (301)
.+ ++||+||+||| +.|..|++||.+ + ++++.++..... +++++|||+|.+|+|+|..+.+.
T Consensus 199 ----~~-i~ad~lVIATG--S~P~~P~IpG~~-~---------v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~ 259 (561)
T PTZ00058 199 ----QV-IEGKNILIAVG--NKPIFPDVKGKE-F---------TISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRL 259 (561)
T ss_pred ----cE-EECCEEEEecC--CCCCCCCCCCce-e---------EEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHc
Confidence 46 89999999999 889999999864 2 344444433222 79999999999999999999999
Q ss_pred cCeEEEEEecCceEeehhhHHHHHHHhhcCCHHHHHH
Q 022182 209 AAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDT 245 (301)
Q Consensus 209 g~~v~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (301)
|.+||++++.+ +++|.++.++...+.+.|....++.
T Consensus 260 G~~Vtli~~~~-~il~~~d~~i~~~l~~~L~~~GV~i 295 (561)
T PTZ00058 260 GAESYIFARGN-RLLRKFDETIINELENDMKKNNINI 295 (561)
T ss_pred CCcEEEEEecc-cccccCCHHHHHHHHHHHHHCCCEE
Confidence 99999999998 7888877777666655554444443
No 34
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=8.9e-21 Score=172.35 Aligned_cols=214 Identities=16% Similarity=0.134 Sum_probs=128.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEecccccc-cCCC---CCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFC-QLPH---LPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|++||..++++|.+|+|+|++..+||++. ..+.|+..+....... .... ..+--....-.+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 48999999999999999999999999999998777888653 3344433221111110 0000 00000001112334
Q ss_pred HHHHHHHHHHHH-----------hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIEHLDHYVSH-----------FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~~l~~~~~~-----------~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++.++....+.+ .++.. ..+. . .+ .. ...+.|...++. ..+ +.||+||+||| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~-a-~~--~~-~~~v~v~~~~g~-----~~~-~~~d~lVIATG--s~ 147 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDW--IKGW-G-RL--DG-VGKVVVKAEDGS-----ETQ-LEAKDIVIATG--SE 147 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEEE-E-EE--cc-CCEEEEEcCCCc-----eEE-EEeCEEEEeCC--CC
Confidence 444433333221 12221 2111 1 11 11 233445443331 146 89999999999 66
Q ss_pred CCCCCCCCccccccCCCCCc-cEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 151 PFTPDIRGLCSFCSSATGTG-EVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 151 p~~p~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
|. ++||.+. .+ .++++.+... ....+++++|||+|.+|+|+|..+.+.|.+||++++.+ .++|..+.+
T Consensus 148 p~--~ipg~~~-------~~~~~~~~~~~~~-~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~-~il~~~d~~ 216 (466)
T PRK06115 148 PT--PLPGVTI-------DNQRIIDSTGALS-LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD-RICPGTDTE 216 (466)
T ss_pred CC--CCCCCCC-------CCCeEECHHHHhC-CccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-CCCCCCCHH
Confidence 63 3566532 22 2444444333 22357999999999999999999999999999999998 788887766
Q ss_pred HHHHHhhcCCHHHHHHH
Q 022182 230 LGVVLFKYVPFGWVDTL 246 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~~~ 246 (301)
+...+.+.|....++..
T Consensus 217 ~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 217 TAKTLQKALTKQGMKFK 233 (466)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 66666555544444433
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.86 E-value=5.5e-21 Score=173.93 Aligned_cols=215 Identities=17% Similarity=0.135 Sum_probs=134.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC--------CCCcccC-CCCCCceEEeccccccc----CCCCCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--------CYASIWK-KYSYDRLRLHLAKQFCQ----LPHLPFPSS 73 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~--------~~gg~w~-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 73 (301)
+|||+||||||+|+.+|..+++.|.+|+++|+.. .+||+|. ..+.|+..+........ ...+-+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 5899999999999999999999999999999731 4777654 45666543322211110 111111100
Q ss_pred CCCCCCHHHHHHHHHHHHHHh-----------CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 74 YPMFVSRAQFIEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~-----------~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
.....+...+.++.++.+.++ +++. +.....-++ .....|...++. ..+ +.||+||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~---i~G~a~f~~----~~~v~v~~~~g~-----~~~-~~~d~lV 148 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNY---ENAYAEFVD----KHRIKATNKKGK-----EKI-YSAERFL 148 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEE---EEEEEEEcC----CCEEEEeccCCC-----ceE-EEeCEEE
Confidence 001245556666655554433 2211 111111111 122333322221 146 8999999
Q ss_pred EecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceE
Q 022182 143 VASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (301)
Q Consensus 143 lAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (301)
+||| +.|..|++||.+.+ .+++.+... ....+++++|||+|.+|+|+|..|++.|.+||++.| + .+
T Consensus 149 IATG--s~p~~p~ipG~~~~---------~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~-~~ 214 (484)
T TIGR01438 149 IATG--ERPRYPGIPGAKEL---------CITSDDLFS-LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-S-IL 214 (484)
T ss_pred EecC--CCCCCCCCCCccce---------eecHHHhhc-ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-c-cc
Confidence 9999 78999999987432 233333322 123467899999999999999999999999999998 4 67
Q ss_pred eehhhHHHHHHHhhcCCHHHHHHHHH
Q 022182 223 LSREMVYLGVVLFKYVPFGWVDTLMV 248 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (301)
+|.++.++...+.+.|....++...+
T Consensus 215 l~~~d~~~~~~l~~~L~~~gV~i~~~ 240 (484)
T TIGR01438 215 LRGFDQDCANKVGEHMEEHGVKFKRQ 240 (484)
T ss_pred ccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 88888877777766665555554433
No 36
>PLN02546 glutathione reductase
Probab=99.86 E-value=2e-21 Score=178.53 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=130.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecC---------CCCCcccC-CCCCCceEEeccccc----ccCCCCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE---------NCYASIWK-KYSYDRLRLHLAKQF----CQLPHLPFPS 72 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~---------~~~gg~w~-~~~~~~~~~~~~~~~----~~~~~~~~~~ 72 (301)
+|||+|||+||+|+.+|..|+++|.+|+|+|+. ..+||++- ..+.|...+...... .....+.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 589999999999999999999999999999962 34677543 344443322211111 0011111110
Q ss_pred CCCCCCCHHHHHHHHHHHH-----------HHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEE
Q 022182 73 SYPMFVSRAQFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (301)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~-----------~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~v 141 (301)
.....++...+.++.++.. ++.+++. + ..+++.++. .+|.+. + .. +.||+|
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~--i-~G~a~~vd~------~~V~v~-G-------~~-~~~D~L 220 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTL--I-EGRGKIVDP------HTVDVD-G-------KL-YTARNI 220 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEE--E-EeEEEEccC------CEEEEC-C-------EE-EECCEE
Confidence 0011234444444433322 2233332 2 222333322 234442 2 56 899999
Q ss_pred EEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCce
Q 022182 142 VVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVH 221 (301)
Q Consensus 142 VlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~ 221 (301)
|+||| +.|..|++||.+.. +++.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .
T Consensus 221 VIATG--s~p~~P~IpG~~~v----------~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~-~ 286 (558)
T PLN02546 221 LIAVG--GRPFIPDIPGIEHA----------IDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK-K 286 (558)
T ss_pred EEeCC--CCCCCCCCCChhhc----------cCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc-c
Confidence 99999 88999999986532 23322222 22357899999999999999999999999999999988 7
Q ss_pred EeehhhHHHHHHHhhcCCHHHHHHH
Q 022182 222 VLSREMVYLGVVLFKYVPFGWVDTL 246 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~ 246 (301)
++|..+.++...+.+.|....++..
T Consensus 287 il~~~d~~~~~~l~~~L~~~GV~i~ 311 (558)
T PLN02546 287 VLRGFDEEVRDFVAEQMSLRGIEFH 311 (558)
T ss_pred cccccCHHHHHHHHHHHHHCCcEEE
Confidence 8888777777666665555555443
No 37
>PRK12831 putative oxidoreductase; Provisional
Probab=99.86 E-value=5e-21 Score=173.33 Aligned_cols=173 Identities=23% Similarity=0.286 Sum_probs=121.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...+||+||||||+|+++|..|+++|++|+|+|+.+.+||.+.+. ++.+.++ .+++.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~l~--------~~~~~ 194 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG---------------IPEFRLP--------KETVV 194 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec---------------CCCccCC--------ccHHH
Confidence 346899999999999999999999999999999999888876431 1221111 12466
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
.+..++++++++.+ ++++.+.. .+...+.. .. +.||.||+|||+ ..|..+++||.+.
T Consensus 195 ~~~~~~~~~~gv~i--~~~~~v~~----------~v~~~~~~------~~-~~~d~viiAtGa-~~~~~l~ipG~~~--- 251 (464)
T PRK12831 195 KKEIENIKKLGVKI--ETNVVVGK----------TVTIDELL------EE-EGFDAVFIGSGA-GLPKFMGIPGENL--- 251 (464)
T ss_pred HHHHHHHHHcCCEE--EcCCEECC----------cCCHHHHH------hc-cCCCEEEEeCCC-CCCCCCCCCCcCC---
Confidence 66667777778665 77775510 12222210 23 568999999995 2577788888753
Q ss_pred CCCCCccEEeccCCC-------------CCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 165 SATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~-------------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
.| ++...++. +.....+++|+|||+|++|+|+|..+.+.|.+||+++|++..-+|....
T Consensus 252 ----~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~ 323 (464)
T PRK12831 252 ----NG-VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE 323 (464)
T ss_pred ----cC-cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH
Confidence 22 22222211 1123468999999999999999999999999999999987545555433
No 38
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-20 Score=147.09 Aligned_cols=175 Identities=16% Similarity=0.253 Sum_probs=132.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC----CCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN----CYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~----~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (301)
.+|+|||+||++..+|.++++...+.++||-.- .+||... .....-.||.+ |.-..+.++
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt----------TTT~veNfPGF------Pdgi~G~~l 72 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT----------TTTDVENFPGF------PDGITGPEL 72 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee----------eeeccccCCCC------CcccccHHH
Confidence 489999999999999999999999999999532 1233211 11111122222 233467899
Q ss_pred HHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCc-c-c
Q 022182 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGL-C-S 161 (301)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~-~-~ 161 (301)
.+.+++++++++.++ +...|.+++... ..|.+.++. .. +.+|.||+|||+ ......+||. + .
T Consensus 73 ~d~mrkqs~r~Gt~i---~tEtVskv~~ss--kpF~l~td~--------~~-v~~~avI~atGA--sAkRl~~pg~ge~~ 136 (322)
T KOG0404|consen 73 MDKMRKQSERFGTEI---ITETVSKVDLSS--KPFKLWTDA--------RP-VTADAVILATGA--SAKRLHLPGEGEGE 136 (322)
T ss_pred HHHHHHHHHhhccee---eeeehhhccccC--CCeEEEecC--------Cc-eeeeeEEEeccc--ceeeeecCCCCcch
Confidence 999999999999874 556688887755 788888865 45 899999999995 4444556665 2 2
Q ss_pred cccCCCCCccEEeccCCCCCC--CCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 162 FCSSATGTGEVIHSTQYKNGK--PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~--~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
| ..+-+.++..++.. .+++|..+|||+|.+|+|-|..|.+.+.+|++++|++.
T Consensus 137 f------WqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~ 191 (322)
T KOG0404|consen 137 F------WQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDH 191 (322)
T ss_pred H------HhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhh
Confidence 5 56667777777754 48899999999999999999999999999999999994
No 39
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.85 E-value=1.6e-20 Score=181.37 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=123.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||||||||+||..|++.|++|+|||+.+.+||.+.+. .|. |-...++.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG---------------IP~---------~rlp~~vi~ 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG---------------IPE---------FRLPNQLID 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc---------------CCC---------CcChHHHHH
Confidence 46899999999999999999999999999999999999886532 222 222245677
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+.++.+|+.+ +.++.+- ..+++.+. .. ..||+||+|||+ ..|+.+++||.+.
T Consensus 361 ~~i~~l~~~Gv~f--~~n~~vG----------~dit~~~l-------~~-~~yDAV~LAtGA-~~pr~l~IpG~dl---- 415 (944)
T PRK12779 361 DVVEKIKLLGGRF--VKNFVVG----------KTATLEDL-------KA-AGFWKIFVGTGA-GLPTFMNVPGEHL---- 415 (944)
T ss_pred HHHHHHHhhcCeE--EEeEEec----------cEEeHHHh-------cc-ccCCEEEEeCCC-CCCCcCCCCCCcC----
Confidence 7777777888765 6665441 12444432 23 468999999995 3678888988653
Q ss_pred CCCCccEEeccCCC---------------CCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHH
Q 022182 166 ATGTGEVIHSTQYK---------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYL 230 (301)
Q Consensus 166 ~~~~g~~~~~~~~~---------------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 230 (301)
.| ++...++. ......+++|+|||+|++|+|+|..+.+.|++|++++|++...+|....++
T Consensus 416 ---~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~ 491 (944)
T PRK12779 416 ---LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL 491 (944)
T ss_pred ---cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHH
Confidence 22 22222211 011236899999999999999999999999999999998755566544333
No 40
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=8.3e-21 Score=172.37 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=128.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEeccccccc----CCCCCCCCC-CCCCCCHHHH
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQ----LPHLPFPSS-YPMFVSRAQF 83 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~ 83 (301)
+|+||||||+|+++|..|++.|.+|+|+|++...|.+.+..+.|...+........ ...+-.+.. .....+...+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 89999999999999999999999999999986444344445555332211110000 001111000 0112355566
Q ss_pred HHHHHHHHHHh-----------CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 84 IEHLDHYVSHF-----------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 84 ~~~l~~~~~~~-----------~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
.++.++..++. +++ ....++..++ .....|...++ ..+ +.||+||+||| +.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~----~~~v~v~~~~~------~~~-~~~d~lviATG--s~p~ 145 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET----DHRVRVEYGDK------EEV-VDAEQFIIAAG--SEPT 145 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc----CCEEEEeeCCC------cEE-EECCEEEEeCC--CCCC
Confidence 65555444432 221 1122222221 23344544222 146 89999999999 7777
Q ss_pred CCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHH
Q 022182 153 TPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGV 232 (301)
Q Consensus 153 ~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~ 232 (301)
.|++++.+. ..++++.+... ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ +++|..+.++..
T Consensus 146 ~~p~~~~~~--------~~v~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~-~ll~~~d~e~~~ 215 (458)
T PRK06912 146 ELPFAPFDG--------KWIINSKHAMS-LPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP-QLLPGEDEDIAH 215 (458)
T ss_pred CCCCCCCCC--------CeEEcchHHhC-ccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-CcCccccHHHHH
Confidence 776766432 12444433332 22346899999999999999999999999999999998 788877666665
Q ss_pred HHhhcCCHHHHH
Q 022182 233 VLFKYVPFGWVD 244 (301)
Q Consensus 233 ~~~~~l~~~~~~ 244 (301)
.+.+.|....++
T Consensus 216 ~l~~~L~~~GI~ 227 (458)
T PRK06912 216 ILREKLENDGVK 227 (458)
T ss_pred HHHHHHHHCCCE
Confidence 555544333333
No 41
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.84 E-value=2.4e-20 Score=169.85 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=124.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEecccccc----cCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (301)
.|||+|||||++|+++|.+|++.|.+|+|+|+ +.+||+|.. .++|...+....... ....+..... ....+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE-NVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC-CCcCCHH
Confidence 38999999999999999999999999999999 778887654 333332111110000 0000111000 1123344
Q ss_pred HHHHHHHHHHH-----------HhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 82 QFIEHLDHYVS-----------HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 82 ~~~~~l~~~~~-----------~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+.++.+...+ ..+++. ..+ ++..++ ...+.+...++. .+ +.||+||+||| +.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g-~~~~~~----~~~~~v~~~~g~------~~-~~~d~lVlAtG--~~ 142 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTV--IKG-EAKFLD----PGTVLVTGENGE------ET-LTAKNIIIATG--SR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEE--EEE-EEEEcc----CCEEEEecCCCc------EE-EEeCEEEEcCC--CC
Confidence 44444333322 223322 222 222221 234555543321 46 89999999999 77
Q ss_pred CCCCCCC-CccccccCCCCCcc-EEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 151 PFTPDIR-GLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 151 p~~p~~~-g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
|..|++| +. .+. +.++.+... ....+++++|||+|.+|+|+|..|.+.|.+|++++|.+ .++|..+.
T Consensus 143 p~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~ 211 (461)
T TIGR01350 143 PRSLPGPFDF---------DGEVVITSTGALN-LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD-RILPGEDA 211 (461)
T ss_pred CCCCCCCCCC---------CCceEEcchHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC-CCCCCCCH
Confidence 8777765 22 222 333332222 22346899999999999999999999999999999998 67887666
Q ss_pred HHHHHHhhcC
Q 022182 229 YLGVVLFKYV 238 (301)
Q Consensus 229 ~~~~~~~~~l 238 (301)
++...+.+.+
T Consensus 212 ~~~~~~~~~l 221 (461)
T TIGR01350 212 EVSKVVAKAL 221 (461)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 42
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.84 E-value=2.1e-21 Score=185.83 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=127.2
Q ss_pred EEEECCChHHHHHHHHHhhC---CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 10 VIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~---g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
|||||||++|+.+|.+|++. +++|+|||+++.++ |....+ +. ......+.+++...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-------y~r~~L--~~------------~l~g~~~~~~l~~~ 59 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-------YNRILL--SS------------VLQGEADLDDITLN 59 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-------cccccc--cH------------HHCCCCCHHHccCC
Confidence 68999999999999999875 46999999988753 221110 00 00111122333333
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSA 166 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~ 166 (301)
..++.++.+++. +++++|+.++... ++|.+.++ .+ +.||+||+||| +.|..|++||.+.
T Consensus 60 ~~~~~~~~gv~~--~~g~~V~~Id~~~----k~V~~~~g-------~~-~~yD~LVlATG--s~p~~p~ipG~~~----- 118 (785)
T TIGR02374 60 SKDWYEKHGITL--YTGETVIQIDTDQ----KQVITDAG-------RT-LSYDKLILATG--SYPFILPIPGADK----- 118 (785)
T ss_pred CHHHHHHCCCEE--EcCCeEEEEECCC----CEEEECCC-------cE-eeCCEEEECCC--CCcCCCCCCCCCC-----
Confidence 344556667655 8899999998643 56777654 56 89999999999 7899999999764
Q ss_pred CCCccEEeccCCCCC-----CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehh-hHHHHHHHhhcCCH
Q 022182 167 TGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFKYVPF 240 (301)
Q Consensus 167 ~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~~~l~~ 240 (301)
.+ ++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++++. +......+.+.+..
T Consensus 119 --~~-v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~-~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 119 --KG-VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP-GLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred --CC-EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC-chhhhhcCHHHHHHHHHHHHH
Confidence 22 3322221111 11246899999999999999999999999999999998 666653 33444444444333
Q ss_pred HHHH
Q 022182 241 GWVD 244 (301)
Q Consensus 241 ~~~~ 244 (301)
..++
T Consensus 195 ~GV~ 198 (785)
T TIGR02374 195 KGLT 198 (785)
T ss_pred cCCE
Confidence 3333
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.84 E-value=9e-22 Score=171.04 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=138.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
+++|||||||++|+.+|..|.+.. .+++++|+++..- +..+. ++-.....+..++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl-------~~plL---------------~eva~g~l~~~~i~ 60 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL-------FTPLL---------------YEVATGTLSESEIA 60 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc-------cchhh---------------hhhhcCCCChhhee
Confidence 569999999999999999999975 8999999988521 11100 00001112223333
Q ss_pred HHHHHHHHHhC-CCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccc
Q 022182 85 EHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 85 ~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
.-++..++..+ ++ ....+|++||.++ .+|++.++ .. +.||+||+|+| +.+..+.+||...++
T Consensus 61 ~p~~~~~~~~~~v~---~~~~~V~~ID~~~----k~V~~~~~-------~~-i~YD~LVvalG--s~~~~fgi~G~~E~a 123 (405)
T COG1252 61 IPLRALLRKSGNVQ---FVQGEVTDIDRDA----KKVTLADL-------GE-ISYDYLVVALG--SETNYFGIPGAAEYA 123 (405)
T ss_pred ccHHHHhcccCceE---EEEEEEEEEcccC----CEEEeCCC-------cc-ccccEEEEecC--CcCCcCCCCCHHHhC
Confidence 33444444333 32 4566899998865 55777763 46 89999999999 888889999976652
Q ss_pred cCC-------CCCccEEeccCCCCCCCC--CCCeEEEECCCcCHHHHHHHHHhccC-------------eEEEEEecCce
Q 022182 164 SSA-------TGTGEVIHSTQYKNGKPY--GGKNVLVVGSGNSGMEIALDLANHAA-------------KTSLVVRSPVH 221 (301)
Q Consensus 164 ~~~-------~~~g~~~~~~~~~~~~~~--~~~~v~VvG~G~~g~e~a~~l~~~g~-------------~v~~~~r~~~~ 221 (301)
-.. ....++....+..+.... .-.+++|+|+|++|+|+|.+|+++.. +|+++++.| .
T Consensus 124 ~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p-~ 202 (405)
T COG1252 124 FGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP-R 202 (405)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc-h
Confidence 000 000111100011110111 12379999999999999999987532 899999999 8
Q ss_pred EeehhhHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 022182 222 VLSREMVYLGVVLFKYVPFGWVDTLMVMLSRLV 254 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 254 (301)
+||.+..+++...++.|.+.+++..+++.++.+
T Consensus 203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v 235 (405)
T COG1252 203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEV 235 (405)
T ss_pred hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEE
Confidence 999999999888888888888887776665544
No 44
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.84 E-value=5.9e-20 Score=165.80 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=123.3
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
++|||||||++|+.+|..|+++ +.+|+|+|+++.++ |.. +.++.+.. .......++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-------~~~---------~~lp~~~~----~~~~~~~~~~~ 61 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-------FAN---------CALPYYIG----EVVEDRKYALA 61 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-------ccc---------CCcchhhc----CccCCHHHccc
Confidence 4899999999999999999887 67999999988643 110 00111000 00111222222
Q ss_pred HH-HHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 86 HL-DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 86 ~l-~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+. ..+.++.++.. +.+++|+.|+.++ +. |.+.++.++ ...+ +.||+||+||| +.|..|++++..
T Consensus 62 ~~~~~~~~~~~i~v--~~~~~V~~Id~~~--~~--v~~~~~~~~--~~~~-~~yd~lviAtG--s~~~~~~~~~~~---- 126 (438)
T PRK13512 62 YTPEKFYDRKQITV--KTYHEVIAINDER--QT--VTVLNRKTN--EQFE-ESYDKLILSPG--ASANSLGFESDI---- 126 (438)
T ss_pred CCHHHHHHhCCCEE--EeCCEEEEEECCC--CE--EEEEECCCC--cEEe-eecCEEEECCC--CCCCCCCCCCCC----
Confidence 22 23345556555 7889999998755 33 444433211 1135 68999999999 777777654321
Q ss_pred CCCCCccEEeccCCCCC-------CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhhc
Q 022182 165 SATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKY 237 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (301)
++....+.+. ....+++++|||+|.+|+|+|..|.+.|.+||++++++ .++|..+.++...+.+.
T Consensus 127 -------~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~~d~~~~~~l~~~ 198 (438)
T PRK13512 127 -------TFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD-KINKLMDADMNQPILDE 198 (438)
T ss_pred -------eEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc-ccchhcCHHHHHHHHHH
Confidence 2221111110 12246899999999999999999999999999999998 67777766666555554
Q ss_pred CCHHHH
Q 022182 238 VPFGWV 243 (301)
Q Consensus 238 l~~~~~ 243 (301)
|....+
T Consensus 199 l~~~gI 204 (438)
T PRK13512 199 LDKREI 204 (438)
T ss_pred HHhcCC
Confidence 444333
No 45
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=6.4e-20 Score=167.24 Aligned_cols=213 Identities=15% Similarity=0.187 Sum_probs=127.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEec------CCCCCcccCCC-CCCceEEe-cccccccC----CCCCCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILER------ENCYASIWKKY-SYDRLRLH-LAKQFCQL----PHLPFPSSY 74 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~------~~~~gg~w~~~-~~~~~~~~-~~~~~~~~----~~~~~~~~~ 74 (301)
.|||+||||||+|+++|.++++.|.+|+|+|+ ...+||+|... +.|...+. ....+..+ ..+-....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~- 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD- 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC-
Confidence 58999999999999999999999999999998 35678877543 22321111 11110000 11100000
Q ss_pred CCCCCHHHHHHHHHHHH-----------HHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEE
Q 022182 75 PMFVSRAQFIEHLDHYV-----------SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (301)
Q Consensus 75 ~~~~~~~~~~~~l~~~~-----------~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVl 143 (301)
....+.+.+.++.+... +..++.. ...++..++... +.++|.+..+++ .+ ++||+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~~~~~~~~~--~~~~v~v~~~~~-----~~-~~~d~lVi 151 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITV---LKGRGSFVGKTD--AGYEIKVTGEDE-----TV-ITAKHVII 151 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE---EEEEEEEecCCC--CCCEEEEecCCC-----eE-EEeCEEEE
Confidence 00123344444333222 2233332 233444444332 457777653211 47 89999999
Q ss_pred ecCCCCCCCCCCCCCccccccCCCCCcc-EEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceE
Q 022182 144 ASGETTNPFTPDIRGLCSFCSSATGTGE-VIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (301)
Q Consensus 144 AtG~~~~p~~p~~~g~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (301)
||| +.|..| |+.. + .+. ++++..... ....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .+
T Consensus 152 ATG--s~p~~~--p~~~-~------~~~~~~~~~~~~~-~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~-~~ 218 (475)
T PRK06327 152 ATG--SEPRHL--PGVP-F------DNKIILDNTGALN-FTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP-AF 218 (475)
T ss_pred eCC--CCCCCC--CCCC-C------CCceEECcHHHhc-ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC-cc
Confidence 999 666533 2222 1 222 333222222 23357999999999999999999999999999999998 77
Q ss_pred eehhhHHHHHHHhhcCCHHHHH
Q 022182 223 LSREMVYLGVVLFKYVPFGWVD 244 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~l~~~~~~ 244 (301)
+|..+.++...+.+.|....++
T Consensus 219 l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 219 LAAADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred CCcCCHHHHHHHHHHHHHcCcE
Confidence 8876666665555544444443
No 46
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.84 E-value=2.3e-20 Score=173.66 Aligned_cols=213 Identities=14% Similarity=0.133 Sum_probs=130.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecC-CCCCccc-CCCCCCceEEeccccc------------ccCCCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NCYASIW-KKYSYDRLRLHLAKQF------------CQLPHLPFP 71 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~-~~~gg~w-~~~~~~~~~~~~~~~~------------~~~~~~~~~ 71 (301)
.+|||+|||+|++|..+|..++++|.+|+|||+. ..+||++ +..+.|...+...... +.+....|+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~ 194 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFK 194 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecccc
Confidence 4689999999999999999999999999999975 3577754 3344443321111100 001000000
Q ss_pred --------CC----CCCCCCHHHHHHHHHHHHHHhCCCc-------eeeeCcEEEEEEEcCC--CCcEEEEEeecCCCCc
Q 022182 72 --------SS----YPMFVSRAQFIEHLDHYVSHFNIGP-------SIRYQRSVESASYDEA--TNMWNVKASNLLSPGR 130 (301)
Q Consensus 72 --------~~----~~~~~~~~~~~~~l~~~~~~~~~~~-------~i~~~~~V~~i~~~~~--~~~~~V~~~~~~~~~~ 130 (301)
.. ....++...+.++.+..++.+.-.. .+........+..... .+..+|..... +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~--g-- 270 (659)
T PTZ00153 195 NGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKS--G-- 270 (659)
T ss_pred ccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccC--C--
Confidence 00 0112466777777776665531100 0011111222222110 01122333211 1
Q ss_pred eeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccC
Q 022182 131 EIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (301)
Q Consensus 131 ~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 210 (301)
.+ +.||+||+||| +.|..|++++.+. ..++++.+... ....+++++|||+|.+|+|+|..|.+.|.
T Consensus 271 --~~-i~ad~lIIATG--S~P~~P~~~~~~~--------~~V~ts~d~~~-l~~lpk~VvIVGgG~iGvE~A~~l~~~G~ 336 (659)
T PTZ00153 271 --KE-FKVKNIIIATG--STPNIPDNIEVDQ--------KSVFTSDTAVK-LEGLQNYMGIVGMGIIGLEFMDIYTALGS 336 (659)
T ss_pred --EE-EECCEEEEcCC--CCCCCCCCCCCCC--------CcEEehHHhhh-hhhcCCceEEECCCHHHHHHHHHHHhCCC
Confidence 56 89999999999 8888887655432 13454443322 22347899999999999999999999999
Q ss_pred eEEEEEecCceEeehhhHHHHHHHhhc
Q 022182 211 KTSLVVRSPVHVLSREMVYLGVVLFKY 237 (301)
Q Consensus 211 ~v~~~~r~~~~~~~~~~~~~~~~~~~~ 237 (301)
+||++++.+ .++|..+.++...+.+.
T Consensus 337 eVTLIe~~~-~ll~~~d~eis~~l~~~ 362 (659)
T PTZ00153 337 EVVSFEYSP-QLLPLLDADVAKYFERV 362 (659)
T ss_pred eEEEEeccC-cccccCCHHHHHHHHHH
Confidence 999999998 78888777776666554
No 47
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.84 E-value=5.3e-20 Score=166.86 Aligned_cols=189 Identities=16% Similarity=0.257 Sum_probs=123.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
++|+|||||++|+++|..|++++ .+|+|||+++.++ |... .++.+.. ..+....++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~~~--------------~~~~~~~----~~~~~~~~~~~ 60 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FGAC--------------GLPYFVG----GFFDDPNTMIA 60 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--eecC--------------CCceEec----cccCCHHHhhc
Confidence 37999999999999999999875 5899999988653 1100 0111000 01112233444
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe--eCEEEEecCCCCCCCCCCCCCccccc
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~--ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
+..+..++.+++. +++++|+.++.++ .. |.+.+..++ .+ +. ||+||+||| ++|..|++||.+.
T Consensus 61 ~~~~~~~~~gv~~--~~~~~V~~id~~~--~~--v~~~~~~~~----~~-~~~~yd~lviAtG--~~~~~~~i~g~~~-- 125 (444)
T PRK09564 61 RTPEEFIKSGIDV--KTEHEVVKVDAKN--KT--ITVKNLKTG----SI-FNDTYDKLMIATG--ARPIIPPIKNINL-- 125 (444)
T ss_pred CCHHHHHHCCCeE--EecCEEEEEECCC--CE--EEEEECCCC----CE-EEecCCEEEECCC--CCCCCCCCCCcCC--
Confidence 4445556667654 7889999998754 33 444331111 33 45 999999999 7888888888753
Q ss_pred cCCCCCccEEeccCCCCC-------CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeeh-hhHHHHHHHh
Q 022182 164 SSATGTGEVIHSTQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVLF 235 (301)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~-------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~ 235 (301)
. .+.+...+.+. ....+++++|||+|.+|+|+|..+.+.|.+|+++++.+ .++|. .+.++...+.
T Consensus 126 -----~-~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~-~~l~~~~~~~~~~~l~ 198 (444)
T PRK09564 126 -----E-NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED-RILPDSFDKEITDVME 198 (444)
T ss_pred -----C-CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc-ccCchhcCHHHHHHHH
Confidence 1 23433332211 12346899999999999999999999999999999988 56653 4444444444
Q ss_pred hcC
Q 022182 236 KYV 238 (301)
Q Consensus 236 ~~l 238 (301)
+.+
T Consensus 199 ~~l 201 (444)
T PRK09564 199 EEL 201 (444)
T ss_pred HHH
Confidence 433
No 48
>PRK07846 mycothione reductase; Reviewed
Probab=99.83 E-value=2.1e-20 Score=168.97 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=124.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-cCCCCCCceEEecccccc----cCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+||||||+|..+|..+ .|.+|+|+|++. +||+ .+..+.|+..+....... ..+.+-.... ....+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE-LDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC-CCcCCHH
Confidence 48999999999999988764 599999999865 5664 444455544322111111 0011111100 1124666
Q ss_pred HHHHHHHHHHHHhCCC-ceee-e-CcEEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCC
Q 022182 82 QFIEHLDHYVSHFNIG-PSIR-Y-QRSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (301)
Q Consensus 82 ~~~~~l~~~~~~~~~~-~~i~-~-~~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~ 157 (301)
++.++.....+++.-. .... + ...|+-+.-.. -.+..+|++.++ .+ +.||+||+||| +.|..|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g-------~~-~~~d~lViATG--s~p~~p~i~ 146 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG-------EE-ITADQVVIAAG--SRPVIPPVI 146 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC-------CE-EEeCEEEEcCC--CCCCCCCCC
Confidence 7777766655543111 0001 1 01122111000 002345666543 46 89999999999 889999998
Q ss_pred CccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHh
Q 022182 158 GLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF 235 (301)
Q Consensus 158 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (301)
|.+.. .+..+.+... ....+++++|||+|.+|+|+|..|++.|.+|++++|++ .++|..+.++...+.
T Consensus 147 g~~~~--------~~~~~~~~~~-l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l~ 214 (451)
T PRK07846 147 ADSGV--------RYHTSDTIMR-LPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFT 214 (451)
T ss_pred CcCCc--------cEEchHHHhh-hhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-ccccccCHHHHHHHH
Confidence 85432 1233322222 22347899999999999999999999999999999998 677776666654443
No 49
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.83 E-value=7e-20 Score=166.49 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=129.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-CCCCceEEeccccc----ccCCCCCCCCC--CCCCCCH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-YSYDRLRLHLAKQF----CQLPHLPFPSS--YPMFVSR 80 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 80 (301)
+||+|||+|++|+.+|..|+++|.+|+++|++. +||++.. .+.|+..+...... .....+-+... .....+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 489999999999999999999999999999875 6776543 33333221111000 00000100000 0011233
Q ss_pred HHHHHHHHHH-----------HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHY-----------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~-----------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
..+.++..+. .+.++++. +. .++..++...+...+.|...++. ..+ +.||+||+||| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~--~~-g~~~~~~~~~~~~~v~V~~~~g~-----~~~-~~~d~lViATG--s 149 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRV--IA-GRGRLIDPGLGPHRVKVTTADGG-----EET-LDADVVLIATG--A 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEE--EE-EEEEEeecccCCCEEEEEeCCCc-----eEE-EecCEEEEcCC--C
Confidence 4444443333 33344443 33 33444331112244556554431 146 89999999999 7
Q ss_pred CCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH
Q 022182 150 NPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY 229 (301)
Q Consensus 150 ~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~ 229 (301)
.|..|+.++.. ...++++.+..+. ...+++++|||+|.+|+|+|..|++.|.+||++++.+ .++|..+.+
T Consensus 150 ~p~~~p~~~~~--------~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~-~~l~~~d~~ 219 (466)
T PRK07845 150 SPRILPTAEPD--------GERILTWRQLYDL-DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD-RVLPGEDAD 219 (466)
T ss_pred CCCCCCCCCCC--------CceEEeehhhhcc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC-cCCCCCCHH
Confidence 77665544332 1124555444332 2346899999999999999999999999999999988 788887776
Q ss_pred HHHHHhhcCCHHHHH
Q 022182 230 LGVVLFKYVPFGWVD 244 (301)
Q Consensus 230 ~~~~~~~~l~~~~~~ 244 (301)
+...+.+.|....++
T Consensus 220 ~~~~l~~~L~~~gV~ 234 (466)
T PRK07845 220 AAEVLEEVFARRGMT 234 (466)
T ss_pred HHHHHHHHHHHCCcE
Confidence 666665555444444
No 50
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.83 E-value=1.7e-20 Score=170.39 Aligned_cols=226 Identities=15% Similarity=0.099 Sum_probs=133.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CCCeEEEecC--------CCCCccc-CCCCCCceEEecccccc----cCCCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERE--------NCYASIW-KKYSYDRLRLHLAKQFC----QLPHLPFP 71 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~vie~~--------~~~gg~w-~~~~~~~~~~~~~~~~~----~~~~~~~~ 71 (301)
.+|||+|||+||+|+.+|..++++ |.+|+|+|+. ..+||++ +..+.|...+....... ....+-+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 368999999999999999999996 9999999974 4678864 34445543322111110 01111110
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHhC--CCceeeeCcEEEEEEEcC-CCCcEEEEEee---cCCCCceeEEEEeeCEEEEe
Q 022182 72 SS-YPMFVSRAQFIEHLDHYVSHFN--IGPSIRYQRSVESASYDE-ATNMWNVKASN---LLSPGREIEEYYSGRFLVVA 144 (301)
Q Consensus 72 ~~-~~~~~~~~~~~~~l~~~~~~~~--~~~~i~~~~~V~~i~~~~-~~~~~~V~~~~---~~~~~~~~~~~~~ad~vVlA 144 (301)
.. ...-.+...+.++.+...++.. ....+.....|+-+.-.. -.+..+|.+.. +.+. ...+ +.||+||+|
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~--~~~~-~~~d~lIIA 158 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSA--VKER-LQAEHILLA 158 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCC--cceE-EECCEEEEe
Confidence 00 0112355566666655443321 000000001122221100 00123344432 1110 1156 899999999
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhc---cCeEEEEEecCce
Q 022182 145 SGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH---AAKTSLVVRSPVH 221 (301)
Q Consensus 145 tG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~---g~~v~~~~r~~~~ 221 (301)
|| +.|..|++||.+.. +.+.+... ....+++++|||+|.+|+|+|..+... |.+||++++.+ .
T Consensus 159 TG--s~p~~p~i~G~~~~----------~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~-~ 224 (486)
T TIGR01423 159 TG--SWPQMLGIPGIEHC----------ISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN-M 224 (486)
T ss_pred cC--CCCCCCCCCChhhe----------echhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC-c
Confidence 99 78888999986532 22222222 123468999999999999999877655 89999999998 7
Q ss_pred EeehhhHHHHHHHhhcCCHHHHHHHHH
Q 022182 222 VLSREMVYLGVVLFKYVPFGWVDTLMV 248 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (301)
++|.++.++...+.+.|....++...+
T Consensus 225 il~~~d~~~~~~l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 225 ILRGFDSTLRKELTKQLRANGINIMTN 251 (486)
T ss_pred cccccCHHHHHHHHHHHHHcCCEEEcC
Confidence 888888777777666665555544443
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.83 E-value=6.6e-20 Score=165.73 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=113.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+. ++.+. ...++..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~~~---------~~~~~~~ 187 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG---------------IPEFR---------LPKEIVV 187 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec---------------CCCcc---------CCHHHHH
Confidence 46799999999999999999999999999999998888875422 11111 1134555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+..+.+++.+ ++++.+. ..+.+.+ .. ..||+||+|||+ +.|..|++||.+.
T Consensus 188 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~--------~~-~~yd~viiAtGa-~~p~~~~ipG~~~---- 241 (449)
T TIGR01316 188 TEIKTLKKLGVTF--RMNFLVG----------KTATLEE--------LF-SQYDAVFIGTGA-GLPKLMNIPGEEL---- 241 (449)
T ss_pred HHHHHHHhCCcEE--EeCCccC----------CcCCHHH--------HH-hhCCEEEEeCCC-CCCCcCCCCCCCC----
Confidence 5555566666554 6665331 1233332 12 467999999995 3688888888752
Q ss_pred CCCCccEEeccCCC--------------CCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 166 ATGTGEVIHSTQYK--------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 166 ~~~~g~~~~~~~~~--------------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
.+ +++..++. ......+++|+|||+|++|+|+|..+.+.|.+||+++|++.
T Consensus 242 ---~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 242 ---CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 22 33322211 11234579999999999999999999999999999999874
No 52
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.82 E-value=4.4e-20 Score=164.74 Aligned_cols=183 Identities=18% Similarity=0.237 Sum_probs=115.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCC--CeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
++|+|||||++|+++|..|++.|. +|+|+++++... |... ..++.+..-.. .+ ..+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~-------y~r~--~l~~~~~~~~~---~~--~~~~~------ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP-------YERP--PLSKSMLLEDS---PQ--LQQVL------ 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC-------CCCC--CCCHHHHCCCC---cc--ccccC------
Confidence 589999999999999999999876 799999887532 2111 11111100000 00 00000
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
-.++....+++. +.++.|+.++.+. ..|.+.++ .+ +.||+||+||| +.|..+++++...
T Consensus 64 -~~~~~~~~~i~~--~~g~~V~~id~~~----~~v~~~~g-------~~-~~yd~LViATG--s~~~~~p~~~~~~---- 122 (396)
T PRK09754 64 -PANWWQENNVHL--HSGVTIKTLGRDT----RELVLTNG-------ES-WHWDQLFIATG--AAARPLPLLDALG---- 122 (396)
T ss_pred -CHHHHHHCCCEE--EcCCEEEEEECCC----CEEEECCC-------CE-EEcCEEEEccC--CCCCCCCCCCcCC----
Confidence 012233445544 7888899997644 45666554 56 89999999999 6676666554321
Q ss_pred CCCCccEEeccCCCC-----CCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehh-hHHHHHHHhh
Q 022182 166 ATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE-MVYLGVVLFK 236 (301)
Q Consensus 166 ~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~-~~~~~~~~~~ 236 (301)
. .++......+ .....+++++|||+|.+|+|+|..|.+.|.+||++++.+ .++++. ...+...+.+
T Consensus 123 ---~-~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~~l~~~~~~~~~~~l~~ 194 (396)
T PRK09754 123 ---E-RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAA-TVMGRNAPPPVQRYLLQ 194 (396)
T ss_pred ---C-CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC-cchhhhcCHHHHHHHHH
Confidence 1 2332211111 112246899999999999999999999999999999988 666653 3333333433
No 53
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.82 E-value=5.8e-20 Score=175.98 Aligned_cols=195 Identities=19% Similarity=0.175 Sum_probs=132.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhC----CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQ 82 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (301)
+++|||||+|++|+.+|..|+++ +++|+||++++.++ |....+. ..+ .. ...++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~-------Y~r~~L~--~~~------------~~-~~~~~ 60 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA-------YDRVHLS--SYF------------SH-HTAEE 60 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc-------ccCCcch--HhH------------cC-CCHHH
Confidence 35899999999999999999764 47999999998753 3222111 100 00 11223
Q ss_pred HHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccc
Q 022182 83 FIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (301)
Q Consensus 83 ~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~ 162 (301)
+......+.+..+++. +.++.|+.++... ..|.+.++ .+ +.||+||+||| +.|..|++||.+..
T Consensus 61 l~~~~~~~~~~~gI~~--~~g~~V~~Id~~~----~~V~~~~G-------~~-i~yD~LVIATG--s~p~~p~ipG~~~~ 124 (847)
T PRK14989 61 LSLVREGFYEKHGIKV--LVGERAITINRQE----KVIHSSAG-------RT-VFYDKLIMATG--SYPWIPPIKGSETQ 124 (847)
T ss_pred ccCCCHHHHHhCCCEE--EcCCEEEEEeCCC----cEEEECCC-------cE-EECCEEEECCC--CCcCCCCCCCCCCC
Confidence 3333344555667655 8888999997643 45666554 56 89999999999 88999999997642
Q ss_pred ccCCCCCccEEeccCCCCC-----CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeeh-hhHHHHHHHhh
Q 022182 163 CSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSR-EMVYLGVVLFK 236 (301)
Q Consensus 163 ~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~~ 236 (301)
+ ++......+. ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ +++|+ .+.+.+..+.+
T Consensus 125 -------~-v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~-~ll~~~ld~~~~~~l~~ 195 (847)
T PRK14989 125 -------D-CFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP-MLMAEQLDQMGGEQLRR 195 (847)
T ss_pred -------C-eEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc-cchhhhcCHHHHHHHHH
Confidence 2 2322222111 12246899999999999999999999999999999998 77775 44555555555
Q ss_pred cCCHHHHHHHHH
Q 022182 237 YVPFGWVDTLMV 248 (301)
Q Consensus 237 ~l~~~~~~~~~~ 248 (301)
.|....++..++
T Consensus 196 ~L~~~GV~v~~~ 207 (847)
T PRK14989 196 KIESMGVRVHTS 207 (847)
T ss_pred HHHHCCCEEEcC
Confidence 554444443333
No 54
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.82 E-value=1.1e-19 Score=161.28 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=117.3
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
++|||||||++|+.+|..|++. ..+++|+++++... |.... ++..........++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~-------y~~~~--------------l~~~~~~~~~~~~~~~ 61 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE-------YNKPD--------------LSHVFSQGQRADDLTR 61 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC-------cCcCc--------------CcHHHhCCCCHHHhhc
Confidence 5899999999999999999886 45899999877421 21110 0000011122234443
Q ss_pred H-HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 86 H-LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 86 ~-l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
+ ..+++++++++. +++++|++++.+. +.|.+. + .. +.||+||+||| +.|..|++||.+.
T Consensus 62 ~~~~~~~~~~gv~~--~~~~~V~~id~~~----~~v~~~-~-------~~-~~yd~LVlATG--~~~~~p~i~G~~~--- 121 (377)
T PRK04965 62 QSAGEFAEQFNLRL--FPHTWVTDIDAEA----QVVKSQ-G-------NQ-WQYDKLVLATG--ASAFVPPIPGREL--- 121 (377)
T ss_pred CCHHHHHHhCCCEE--ECCCEEEEEECCC----CEEEEC-C-------eE-EeCCEEEECCC--CCCCCCCCCCCce---
Confidence 2 456667777665 7889999998744 355543 2 56 89999999999 7788888988642
Q ss_pred CCCCCccEEeccCCCC-----CCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehh
Q 022182 165 SATGTGEVIHSTQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSRE 226 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~-----~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~ 226 (301)
+++.....+ .....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++++.
T Consensus 122 -------v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~-~~l~~~ 180 (377)
T PRK04965 122 -------MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA-SLLASL 180 (377)
T ss_pred -------EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC-cccchh
Confidence 222221111 111246899999999999999999999999999999998 566543
No 55
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.82 E-value=3.2e-19 Score=170.48 Aligned_cols=173 Identities=24% Similarity=0.314 Sum_probs=118.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|+++|++|+|+|+.+.+||.+... .|.+.. ..++..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~---------------IP~~Rl---------p~evL~ 593 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI---------------IPQFRI---------PAELIQ 593 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee---------------cccccc---------cHHHHH
Confidence 46799999999999999999999999999999999998876531 111111 124555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.+..+++++ ++++.+ .+.. .+. .. ..||+||+|||+. .+..+.++|.+.
T Consensus 594 ~die~l~~~GVe~--~~gt~V-di~l-----------e~L-------~~-~gYDaVILATGA~-~~~~l~IpG~~~---- 646 (1019)
T PRK09853 594 HDIEFVKAHGVKF--EFGCSP-DLTV-----------EQL-------KN-EGYDYVVVAIGAD-KNGGLKLEGGNQ---- 646 (1019)
T ss_pred HHHHHHHHcCCEE--EeCcee-EEEh-----------hhh-------ee-ccCCEEEECcCCC-CCCCCCCCCccC----
Confidence 5556666777655 777765 2211 111 23 5689999999953 344456777531
Q ss_pred CCCCccEEeccCCC------CCCCCCCCeEEEECCCcCHHHHHHHHHhc-c-CeEEEEEecCceEeehhhHHHHHHH
Q 022182 166 ATGTGEVIHSTQYK------NGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSPVHVLSREMVYLGVVL 234 (301)
Q Consensus 166 ~~~~g~~~~~~~~~------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~-g-~~v~~~~r~~~~~~~~~~~~~~~~~ 234 (301)
.+++..++. ......+++|+|||+|++|+|+|..+.+. | .+|++++|++...+|....++...+
T Consensus 647 -----gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al 718 (1019)
T PRK09853 647 -----NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL 718 (1019)
T ss_pred -----CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH
Confidence 122222211 11223589999999999999999999887 4 4899999998677887665554443
No 56
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.81 E-value=9.6e-20 Score=152.78 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=148.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC-CCCCCceEEecccccccCCCC-CCC----CCCCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK-KYSYDRLRLHLAKQFCQLPHL-PFP----SSYPMFVS 79 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~-~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~ 79 (301)
..|||+|||+||+|..||.+++++|++.+++|++..+||++- ..+.|+..+.-...+++.-.. .+. +-.+.-.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 469999999999999999999999999999999999998754 333343322111111111100 000 00122234
Q ss_pred HHHHHHHHHHHHHHhCCCceeee-CcEEEEEEEc---CCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 80 RAQFIEHLDHYVSHFNIGPSIRY-QRSVESASYD---EATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~i~~-~~~V~~i~~~---~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
.+.++......++++.-.+...+ ...|+.+.-. .+.....+.-.++. ... +.++.+|+||| | .+++
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~-----~~i-i~aKnIiiATG--S--eV~~ 187 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGE-----DQI-IKAKNIIIATG--S--EVTP 187 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCC-----ceE-EeeeeEEEEeC--C--ccCC
Confidence 55666666665555421110011 1123322211 11122333333432 267 99999999999 4 3456
Q ss_pred CCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHh
Q 022182 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLF 235 (301)
Q Consensus 156 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~ 235 (301)
+||...- ...++.|..... ....+++++|||+|.+|+|++.-+.++|++||+++-.+ .+.+..|.++++.++
T Consensus 188 ~PGI~ID------ekkIVSStgALs-L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~-~i~~~mD~Eisk~~q 259 (506)
T KOG1335|consen 188 FPGITID------EKKIVSSTGALS-LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD-QIGGVMDGEISKAFQ 259 (506)
T ss_pred CCCeEec------CceEEecCCccc-hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehh-hhccccCHHHHHHHH
Confidence 7787652 233444444433 56678999999999999999999999999999999999 899999999999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 022182 236 KYVPFGWVDTLMVMLSR 252 (301)
Q Consensus 236 ~~l~~~~~~~~~~~~~~ 252 (301)
+.|..+.+++.+.+.+.
T Consensus 260 r~L~kQgikF~l~tkv~ 276 (506)
T KOG1335|consen 260 RVLQKQGIKFKLGTKVT 276 (506)
T ss_pred HHHHhcCceeEeccEEE
Confidence 98888888877665443
No 57
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.81 E-value=2.8e-19 Score=171.18 Aligned_cols=170 Identities=24% Similarity=0.314 Sum_probs=118.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|+++|++|+|||+.+.+||.+.+. ++.+.+| .++.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~rlp---------~~~~~ 485 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG---------------IPEFRLP---------KKIVD 485 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCCCCC---------HHHHH
Confidence 46799999999999999999999999999999988888875532 2222211 23555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+.++++++++ +.++.+. ..+++.+. .. ..||+||+|||+ +.|..+++||.+.
T Consensus 486 ~~~~~l~~~gv~~--~~~~~v~----------~~v~~~~l-------~~-~~ydavvlAtGa-~~~~~l~ipG~~~---- 540 (752)
T PRK12778 486 VEIENLKKLGVKF--ETDVIVG----------KTITIEEL-------EE-EGFKGIFIASGA-GLPNFMNIPGENS---- 540 (752)
T ss_pred HHHHHHHHCCCEE--ECCCEEC----------CcCCHHHH-------hh-cCCCEEEEeCCC-CCCCCCCCCCCCC----
Confidence 5555666777655 6666441 11233322 24 568999999995 3577788888653
Q ss_pred CCCCccEEeccCCC-------------CCCCCCCCeEEEECCCcCHHHHHHHHHhccCe-EEEEEecCceEeehhhH
Q 022182 166 ATGTGEVIHSTQYK-------------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~~~~~-------------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~ 228 (301)
.| +++..++. ......+++|+|||+|++|+|+|..+.+.|.+ ||+++|++...+|....
T Consensus 541 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~ 613 (752)
T PRK12778 541 ---NG-VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE 613 (752)
T ss_pred ---CC-cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 22 23222211 11234579999999999999999999999987 99999987555665433
No 58
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.4e-19 Score=147.82 Aligned_cols=212 Identities=18% Similarity=0.232 Sum_probs=151.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...|||+||||||+|.++|.+.+++|++.-++- .++||.-... +....+- .-.+..++++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT-------------~~IENfI----sv~~teGpkl~ 269 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDT-------------MGIENFI----SVPETEGPKLA 269 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccc-------------cchhhee----ccccccchHHH
Confidence 347999999999999999999999999886663 3466542211 0011000 01234567899
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
..+++.+++|++++ ..-.+++.+.+... ++-..|++.++ .. +.++.+|+|||+.+ +-..+||.+.|
T Consensus 270 ~ale~Hv~~Y~vDi--mn~qra~~l~~a~~~~~l~ev~l~nG-------av-LkaktvIlstGArW--Rn~nvPGE~e~- 336 (520)
T COG3634 270 AALEAHVKQYDVDV--MNLQRASKLEPAAVEGGLIEVELANG-------AV-LKARTVILATGARW--RNMNVPGEDEY- 336 (520)
T ss_pred HHHHHHHhhcCchh--hhhhhhhcceecCCCCccEEEEecCC-------ce-eccceEEEecCcch--hcCCCCchHHH-
Confidence 99999999999876 55566777766432 35678888887 56 89999999999544 44578999988
Q ss_pred cCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhhcCCHHHH
Q 022182 164 SSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFKYVPFGWV 243 (301)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~ 243 (301)
+..-+.++..++...+++|+|+|||+|+||+|.|-+|+....+||+++-.+. + +.+ .+.+.-.+.+|. +
T Consensus 337 -----rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e-L--kAD-~VLq~kl~sl~N--v 405 (520)
T COG3634 337 -----RNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-L--KAD-AVLQDKLRSLPN--V 405 (520)
T ss_pred -----hhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh-h--hhH-HHHHHHHhcCCC--c
Confidence 7777888899999999999999999999999999999999999999987662 1 011 111111222332 3
Q ss_pred HHHHHHHHHHHhcCcc
Q 022182 244 DTLMVMLSRLVYGDLS 259 (301)
Q Consensus 244 ~~~~~~~~~~~~~~~~ 259 (301)
+.+.+..++.+.|+.+
T Consensus 406 ~ii~na~Ttei~Gdg~ 421 (520)
T COG3634 406 TIITNAQTTEVKGDGD 421 (520)
T ss_pred EEEecceeeEEecCCc
Confidence 3444555667777744
No 59
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.80 E-value=1.5e-20 Score=168.94 Aligned_cols=206 Identities=18% Similarity=0.149 Sum_probs=126.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
.+++|||||||++|+.+|.+|...+.+|+|||+++..- |..+ ++.......+..++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~-------~~~~---------------l~~~~~g~~~~~~~~~ 66 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML-------FTPL---------------LPQTTTGTLEFRSICE 66 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc-------hhhh---------------HHHhcccCCChHHhHH
Confidence 45799999999999999999987788999999887421 1000 0000011112233444
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecC----CCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccc
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL----SPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~----~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~ 161 (301)
-+...++.++.. ....+|++|+.++ +.+.+...+.. . ...+ +.||+||+||| +.+..|.+||...
T Consensus 67 ~~~~~~~~~~~~---~i~~~V~~Id~~~--~~v~~~~~~~~~~~~~---~g~~-i~yD~LViAtG--s~~~~~~ipG~~e 135 (424)
T PTZ00318 67 PVRPALAKLPNR---YLRAVVYDVDFEE--KRVKCGVVSKSNNANV---NTFS-VPYDKLVVAHG--ARPNTFNIPGVEE 135 (424)
T ss_pred HHHHHhccCCeE---EEEEEEEEEEcCC--CEEEEecccccccccC---CceE-ecCCEEEECCC--cccCCCCCCCHHH
Confidence 445555555543 4567899998755 44444221110 0 0157 89999999999 7788888888653
Q ss_pred cccCCCCCccEEeccCC----------CC-----C-CCCCCCeEEEECCCcCHHHHHHHHHhc--------------cCe
Q 022182 162 FCSSATGTGEVIHSTQY----------KN-----G-KPYGGKNVLVVGSGNSGMEIALDLANH--------------AAK 211 (301)
Q Consensus 162 ~~~~~~~~g~~~~~~~~----------~~-----~-~~~~~~~v~VvG~G~~g~e~a~~l~~~--------------g~~ 211 (301)
.. .. -..+.+...+ .+ . .....++++|||+|.+|+|+|..|... +.+
T Consensus 136 ~~--~~-~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~ 212 (424)
T PTZ00318 136 RA--FF-LKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECK 212 (424)
T ss_pred cC--CC-CCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCE
Confidence 20 00 0000000000 00 0 011235899999999999999999863 678
Q ss_pred EEEEEecCceEeehhhHHHHHHHhhcCCHHHHHHHHH
Q 022182 212 TSLVVRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMV 248 (301)
Q Consensus 212 v~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (301)
|+++++.+ .++|..+.++...+.+.|.+..++..++
T Consensus 213 Vtlv~~~~-~ll~~~~~~~~~~~~~~L~~~gV~v~~~ 248 (424)
T PTZ00318 213 VTVLEAGS-EVLGSFDQALRKYGQRRLRRLGVDIRTK 248 (424)
T ss_pred EEEEcCCC-cccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 99999998 6778766666666666555555554433
No 60
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.80 E-value=4.9e-19 Score=160.76 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=117.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||.+... .+. +....++..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g---------------ip~---------~~~~~~~~~ 194 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG---------------IPE---------FRLPKDIVD 194 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc---------------CCC---------ccCCHHHHH
Confidence 45799999999999999999999999999999999888765431 111 111235666
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.++++++++ +.++.+.. .+.+.+ .. +.||+||+|||. ..|..+++||.+.
T Consensus 195 ~~~~~l~~~gv~~--~~~~~v~~----------~v~~~~--------~~-~~~d~vvlAtGa-~~~~~~~i~G~~~---- 248 (457)
T PRK11749 195 REVERLLKLGVEI--RTNTEVGR----------DITLDE--------LR-AGYDAVFIGTGA-GLPRFLGIPGENL---- 248 (457)
T ss_pred HHHHHHHHcCCEE--EeCCEECC----------ccCHHH--------HH-hhCCEEEEccCC-CCCCCCCCCCccC----
Confidence 6667777777654 66665411 122222 23 578999999995 2466667887652
Q ss_pred CCCCccEEeccCCCC--------CCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecCceEeehhh
Q 022182 166 ATGTGEVIHSTQYKN--------GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREM 227 (301)
Q Consensus 166 ~~~~g~~~~~~~~~~--------~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~ 227 (301)
.+ +++..++.. .....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|...
T Consensus 249 ---~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~ 315 (457)
T PRK11749 249 ---GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASE 315 (457)
T ss_pred ---CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCH
Confidence 22 333222211 122358999999999999999999999987 89999998755566543
No 61
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.8e-18 Score=143.07 Aligned_cols=225 Identities=19% Similarity=0.217 Sum_probs=147.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEec--CCCCCcccCCC-CCCceEEeccccccc-----------CCCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILER--ENCYASIWKKY-SYDRLRLHLAKQFCQ-----------LPHLPF 70 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~--~~~~gg~w~~~-~~~~~~~~~~~~~~~-----------~~~~~~ 70 (301)
...||++|||||.+||+||.+++..|.+|.++|- ....|..|--. .+-++-| +|+.+|+ ...+-|
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGC-IPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGC-IPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeeccc-ccHHHHHHHHHHHHHHHHHHhhCC
Confidence 3468999999999999999999999999999983 22245556532 1111111 1222211 111222
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHhCCCceeeeCc-EEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 71 PSSY-PMFVSRAQFIEHLDHYVSHFNIGPSIRYQR-SVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 71 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~-~V~~i~~~~-~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
.-+- ...+++..+.+..++.++..+.-..+.++. +|+-++.-. -.+..++...+..+ +.+. ++++.+|+|||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~g---k~~~-~ta~~fvIatG- 170 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKG---KERF-LTAENFVIATG- 170 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCC---ceEE-eecceEEEEec-
Confidence 2111 234567778777777777765443222222 222222110 01223344433222 2256 89999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhh
Q 022182 148 TTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM 227 (301)
Q Consensus 148 ~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~ 227 (301)
.+|+.|++||...+ .+.|.+... ..+.+.+.+|||+|+.|+|+|..|+..|.+||++.|+ .++..++
T Consensus 171 -~RPrYp~IpG~~Ey---------~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFD 237 (503)
T KOG4716|consen 171 -LRPRYPDIPGAKEY---------GITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFD 237 (503)
T ss_pred -CCCCCCCCCCceee---------eeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eeccccc
Confidence 89999999998776 466766655 5566788899999999999999999999999999997 4778888
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 022182 228 VYLGVVLFKYVPFGWVDTLMV 248 (301)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~~~~ 248 (301)
.+++..+...|...++.++..
T Consensus 238 qdmae~v~~~m~~~Gikf~~~ 258 (503)
T KOG4716|consen 238 QDMAELVAEHMEERGIKFLRK 258 (503)
T ss_pred HHHHHHHHHHHHHhCCceeec
Confidence 888777766666655554433
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.79 E-value=1.2e-18 Score=163.99 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=118.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.|.+. ++.+. ...++.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~~---------~~~~~~~ 247 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG---------------IPRFR---------LPESVID 247 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec---------------CCCCC---------CCHHHHH
Confidence 35799999999999999999999999999999999999887532 11111 1234555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.+..+++.+ ++++.+ .. .++..+ .. ..||.||+|||+. .+..+++||.+.
T Consensus 248 ~~~~~l~~~Gv~i--~~~~~v-~~---------dv~~~~--------~~-~~~DaVilAtGa~-~~~~~~ipG~~~---- 301 (652)
T PRK12814 248 ADIAPLRAMGAEF--RFNTVF-GR---------DITLEE--------LQ-KEFDAVLLAVGAQ-KASKMGIPGEEL---- 301 (652)
T ss_pred HHHHHHHHcCCEE--EeCCcc-cC---------ccCHHH--------HH-hhcCEEEEEcCCC-CCCCCCCCCcCc----
Confidence 5566667777654 666643 11 122222 12 3579999999952 234567888653
Q ss_pred CCCCccEEeccCCC-----CCCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecCceEeehhhHHHHHH
Q 022182 166 ATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMVYLGVV 233 (301)
Q Consensus 166 ~~~~g~~~~~~~~~-----~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~ 233 (301)
.+ ++...++. ......+++|+|||+|++|+|+|..+.+.|. +||+++|++...+|....++...
T Consensus 302 ---~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a 371 (652)
T PRK12814 302 ---PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEA 371 (652)
T ss_pred ---CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH
Confidence 22 22221211 1133468999999999999999999999986 69999998866777665544433
No 63
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.78 E-value=1.1e-18 Score=158.08 Aligned_cols=204 Identities=14% Similarity=0.185 Sum_probs=118.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-cCCCCCCceEEecccccc----cCCCCCCCCCCCCCCCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDRLRLHLAKQFC----QLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 81 (301)
+|||+|||+||+|..+|.. +.|.+|+++|++. +||+ .+..+.|+..+....... ....+-+... ...++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE-IDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC-CCccCHH
Confidence 5899999999999998654 4699999999865 6665 444555544322111111 1111111100 1123566
Q ss_pred HHHHHHHH-HHHHhCCC-ceeeeC---cEEEEEEEcC-CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 82 QFIEHLDH-YVSHFNIG-PSIRYQ---RSVESASYDE-ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 82 ~~~~~l~~-~~~~~~~~-~~i~~~---~~V~~i~~~~-~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
.+.++... ..+...-. ...... ..|+-+.-.. -.+.++|.+.++ .+ +.||+||+||| +.|..|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g-------~~-~~~d~lIiATG--s~p~~p~ 147 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG-------EE-ITGDQIVIAAG--SRPYIPP 147 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC-------cE-EEeCEEEEEEC--CCCCCCC
Confidence 66666544 33221000 000100 1122221100 013456666543 46 89999999999 7787776
Q ss_pred CCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHH
Q 022182 156 IRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL 234 (301)
Q Consensus 156 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~ 234 (301)
..+... -.+..+.+... ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+ .++|..+.++...+
T Consensus 148 ~~~~~~--------~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~-~ll~~~d~~~~~~l 216 (452)
T TIGR03452 148 AIADSG--------VRYHTNEDIMR-LPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRF 216 (452)
T ss_pred CCCCCC--------CEEEcHHHHHh-hhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC-ccccccCHHHHHHH
Confidence 433211 11232222222 11247899999999999999999999999999999988 57776665555443
No 64
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=167.85 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=117.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|+++|++|+|||+.+.+||...+. ++ .+....++.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g---------------ip---------~~rl~~e~~~ 484 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG---------------IP---------SFRLPRDIID 484 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc---------------CC---------ccCCCHHHHH
Confidence 35799999999999999999999999999999999888764421 11 1122245666
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+.++.+++++ ++++.+ . .. ++..+.. .. ..||.||+|||+ ..|..+++||.+.
T Consensus 485 ~~~~~l~~~Gv~~--~~~~~v-g-------~~--~~~~~l~------~~-~~yDaViIATGa-~~pr~l~IpG~~l---- 540 (1006)
T PRK12775 485 REVQRLVDIGVKI--ETNKVI-G-------KT--FTVPQLM------ND-KGFDAVFLGVGA-GAPTFLGIPGEFA---- 540 (1006)
T ss_pred HHHHHHHHCCCEE--EeCCcc-C-------Cc--cCHHHHh------hc-cCCCEEEEecCC-CCCCCCCCCCcCC----
Confidence 6777777788665 666543 1 11 2221110 12 457999999995 3577888998642
Q ss_pred CCCCccEEeccCC--------------CCCCCCCCCeEEEECCCcCHHHHHHHHHhccCe-EEEEEecCceEeehhhH
Q 022182 166 ATGTGEVIHSTQY--------------KNGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~~~~--------------~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~~~~~~~~~ 228 (301)
.+ +++..++ .+.....+++|+|||+|++|+|+|..+.+.|.+ |++++|+...-+|....
T Consensus 541 ---~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~ 614 (1006)
T PRK12775 541 ---GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE 614 (1006)
T ss_pred ---CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH
Confidence 22 3333221 122234689999999999999999999999874 89999877555555433
No 65
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.78 E-value=3.6e-18 Score=150.10 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=112.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...++|+|||+|++|+++|..|++.|++++++|+.+.+||.+... ++.. ..+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~---------------~~~~--------~~~~~~~~ 72 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG---------------IPEF--------RIPIERVR 72 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec---------------Cccc--------ccCHHHHH
Confidence 446799999999999999999999999999999999888764321 0000 01223344
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEE--cCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASY--DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSF 162 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~--~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~ 162 (301)
.....+. +.++.. +.++.+..++. ....+.+........ ... +.||+||+|||. ..|..|++||.+.
T Consensus 73 ~~~~~l~-~~~i~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~d~lviAtGs-~~~~~~~ipg~~~- 141 (352)
T PRK12770 73 EGVKELE-EAGVVF--HTRTKVCCGEPLHEEEGDEFVERIVSLE-----ELV-KKYDAVLIATGT-WKSRKLGIPGEDL- 141 (352)
T ss_pred HHHHHHH-hCCeEE--ecCcEEeeccccccccccccccccCCHH-----HHH-hhCCEEEEEeCC-CCCCcCCCCCccc-
Confidence 4444443 336544 77777765532 111122322211110 034 689999999994 2467788888652
Q ss_pred ccCCCCCccEEecc-------C----CC---CCCCCCCCeEEEECCCcCHHHHHHHHHhccCe-EEEEEecCc
Q 022182 163 CSSATGTGEVIHST-------Q----YK---NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSPV 220 (301)
Q Consensus 163 ~~~~~~~g~~~~~~-------~----~~---~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~~ 220 (301)
.+ +..+. . +. ......+++++|||+|.+|+|+|..|...|.+ |+++.|++.
T Consensus 142 ------~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 142 ------PG-VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred ------cC-ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 12 22211 0 01 11133478999999999999999999988887 999998763
No 66
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.78 E-value=3.6e-18 Score=153.81 Aligned_cols=163 Identities=19% Similarity=0.166 Sum_probs=109.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhh--CCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSL--QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~--~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (301)
.+++|+||||||+|++||..|++ .|++|+|||+.+.+||.+++..- +.++....+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gva-----------------------P~~~~~k~v 81 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVA-----------------------PDHPETKNV 81 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccC-----------------------CCcchhHHH
Confidence 45799999999999999999987 69999999999999887664310 122333455
Q ss_pred HHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccc
Q 022182 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
...+.+++...++.+ +.+..+- ..+++.+ -. ..||.||+|||.. .+..+++||.+.
T Consensus 82 ~~~~~~~~~~~~v~~--~~nv~vg----------~dvtl~~--------L~-~~yDaVIlAtGa~-~~~~l~IpG~d~-- 137 (491)
T PLN02852 82 TNQFSRVATDDRVSF--FGNVTLG----------RDVSLSE--------LR-DLYHVVVLAYGAE-SDRRLGIPGEDL-- 137 (491)
T ss_pred HHHHHHHHHHCCeEE--EcCEEEC----------ccccHHH--------Hh-hhCCEEEEecCCC-CCCCCCCCCCCC--
Confidence 666666666655443 4444431 1123322 12 3579999999952 235667888652
Q ss_pred cCCCCCccEEeccCC----------CC--CCCCCCCeEEEECCCcCHHHHHHHHHhc--------------------c-C
Q 022182 164 SSATGTGEVIHSTQY----------KN--GKPYGGKNVLVVGSGNSGMEIALDLANH--------------------A-A 210 (301)
Q Consensus 164 ~~~~~~g~~~~~~~~----------~~--~~~~~~~~v~VvG~G~~g~e~a~~l~~~--------------------g-~ 210 (301)
.| ++...++ .. .....+++|+|||+|++|+|+|..|.+. + .
T Consensus 138 -----~g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~ 211 (491)
T PLN02852 138 -----PG-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVR 211 (491)
T ss_pred -----CC-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCC
Confidence 22 2322222 00 0123579999999999999999998775 4 4
Q ss_pred eEEEEEecCce
Q 022182 211 KTSLVVRSPVH 221 (301)
Q Consensus 211 ~v~~~~r~~~~ 221 (301)
+|+++.|++..
T Consensus 212 ~V~iv~RRg~~ 222 (491)
T PLN02852 212 KVYLVGRRGPV 222 (491)
T ss_pred EEEEEEcCChH
Confidence 69999999843
No 67
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.77 E-value=4.5e-18 Score=163.39 Aligned_cols=173 Identities=23% Similarity=0.306 Sum_probs=112.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||||++||..|++.|++|+|||+.+.+||..... .+.+.. + .+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~---------------IP~~rl--------p-~e~l~ 591 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI---------------IPEFRI--------S-AESIQ 591 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec---------------ccccCC--------C-HHHHH
Confidence 35799999999999999999999999999999999888875321 111111 1 23444
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.+..+++++ ++++.. .. .+... .. ..||+||+|||+. .+..+.++|...
T Consensus 592 ~~ie~l~~~GVe~--~~g~~~----------d~--~ve~l-------~~-~gYDaVIIATGA~-~~~~l~I~G~~~---- 644 (1012)
T TIGR03315 592 KDIELVKFHGVEF--KYGCSP----------DL--TVAEL-------KN-QGYKYVILAIGAW-KHGPLRLEGGGE---- 644 (1012)
T ss_pred HHHHHHHhcCcEE--EEeccc----------ce--Ehhhh-------hc-ccccEEEECCCCC-CCCCCCcCCCCc----
Confidence 4445556666544 544210 01 11111 23 5679999999953 234456666431
Q ss_pred CCCCccEEeccCC----CC--CCCCCCCeEEEECCCcCHHHHHHHHHhc-cC-eEEEEEecCceEeehhhHHHHHHH
Q 022182 166 ATGTGEVIHSTQY----KN--GKPYGGKNVLVVGSGNSGMEIALDLANH-AA-KTSLVVRSPVHVLSREMVYLGVVL 234 (301)
Q Consensus 166 ~~~~g~~~~~~~~----~~--~~~~~~~~v~VvG~G~~g~e~a~~l~~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~ 234 (301)
.++...++ .+ .....+++|+|||+|++|+|+|..+.+. |. +|++++|++...+|....++...+
T Consensus 645 -----~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al 716 (1012)
T TIGR03315 645 -----RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL 716 (1012)
T ss_pred -----ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH
Confidence 12222111 11 1224589999999999999999999886 74 799999988666777665554433
No 68
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.74 E-value=2.6e-17 Score=155.41 Aligned_cols=171 Identities=16% Similarity=0.228 Sum_probs=115.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+. ++.+. ...++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g---------------ip~~~---------l~~~~~~ 381 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG---------------IPAFK---------LDKSLLA 381 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec---------------CCCcc---------CCHHHHH
Confidence 46799999999999999999999999999999999999876542 11111 1134555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.++.+++++ ++++.+.. .+...+ .. ..||.|++|||.+ .+..+.++|.+.
T Consensus 382 ~~~~~~~~~Gv~~--~~~~~v~~----------~i~~~~--------~~-~~~DavilAtGa~-~~~~l~i~g~~~---- 435 (654)
T PRK12769 382 RRREIFSAMGIEF--ELNCEVGK----------DISLES--------LL-EDYDAVFVGVGTY-RSMKAGLPNEDA---- 435 (654)
T ss_pred HHHHHHHHCCeEE--ECCCEeCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCCC----
Confidence 5566677777655 77775521 011111 12 3579999999963 344456666542
Q ss_pred CCCCccEEec--------------cCCCCC--CCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecCceEeehhhH
Q 022182 166 ATGTGEVIHS--------------TQYKNG--KPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~--------------~~~~~~--~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~ 228 (301)
.| ++.. ....+. ....+++|+|||+|++|+|+|..+.+.|. +|++++|++...+|....
T Consensus 436 ---~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~ 511 (654)
T PRK12769 436 ---PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKK 511 (654)
T ss_pred ---CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHH
Confidence 22 1110 011110 12467999999999999999999889986 699999987555676554
Q ss_pred HH
Q 022182 229 YL 230 (301)
Q Consensus 229 ~~ 230 (301)
++
T Consensus 512 e~ 513 (654)
T PRK12769 512 EV 513 (654)
T ss_pred HH
Confidence 33
No 69
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.74 E-value=1.9e-17 Score=150.33 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=116.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||+||+|+++|..|+++|++|+++|+.+.+||.+.+. ++.+ ....++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g---------------ip~~---------~~~~~~~~ 195 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG---------------IPSF---------KLDKAVLS 195 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec---------------Cccc---------cCCHHHHH
Confidence 45799999999999999999999999999999999998876532 1111 11235666
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.++++++.. ++++.+.. .+...+ .. ..||.||+|||... +..+++||.+.
T Consensus 196 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------~~-~~~D~vilAtGa~~-~~~~~i~g~~~---- 249 (467)
T TIGR01318 196 RRREIFTAMGIEF--HLNCEVGR----------DISLDD--------LL-EDYDAVFLGVGTYR-SMRGGLPGEDA---- 249 (467)
T ss_pred HHHHHHHHCCCEE--ECCCEeCC----------ccCHHH--------HH-hcCCEEEEEeCCCC-CCcCCCCCcCC----
Confidence 6677778888665 77776621 011111 23 46799999999522 23356777543
Q ss_pred CCCCccEEecc-----------CCC---C--CCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecCceEeehhhH
Q 022182 166 ATGTGEVIHST-----------QYK---N--GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~~-----------~~~---~--~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~ 228 (301)
.| +.+.. ... . .....+++++|||+|++|+|.|..+.+.|. +||+++|++...+|....
T Consensus 250 ---~g-V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~ 325 (467)
T TIGR01318 250 ---PG-VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRR 325 (467)
T ss_pred ---CC-cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHH
Confidence 22 22111 000 0 012357999999999999999999999985 799999988556776554
Q ss_pred HH
Q 022182 229 YL 230 (301)
Q Consensus 229 ~~ 230 (301)
++
T Consensus 326 e~ 327 (467)
T TIGR01318 326 EV 327 (467)
T ss_pred HH
Confidence 43
No 70
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=1.5e-16 Score=135.37 Aligned_cols=199 Identities=27% Similarity=0.363 Sum_probs=136.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCCCcccCCCC-CCceEEecccccccCCCCCCCC-----------
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWKKYS-YDRLRLHLAKQFCQLPHLPFPS----------- 72 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~gg~w~~~~-~~~~~~~~~~~~~~~~~~~~~~----------- 72 (301)
..+|++.||-||+-|+.|..|...+ .++..+|+.+.+. |+..+ .++..+..+- +.++-.+..|.
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~--WHpGmllegstlQv~F-lkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS--WHPGMLLEGSTLQVPF-LKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCC--cCCCcccCCccccccc-hhhhccccCCCCchHHHHHHHH
Confidence 4689999999999999999999875 7899999998764 77653 2222222111 00010011110
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEE--EEEeecCCCCceeEEEEeeCEE
Q 022182 73 ---------SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN--VKASNLLSPGREIEEYYSGRFL 141 (301)
Q Consensus 73 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~--V~~~~~~~~~~~~~~~~~ad~v 141 (301)
....++++.++.+|+++.++++. .. +++++|+.|..-....... +.+.++ .. +.|+.|
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~-~~--rfg~~V~~i~~~~~d~~~~~~~~t~~~-------~~-y~ar~l 149 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLP-SL--RFGEEVTDISSLDGDAVVRLFVVTANG-------TV-YRARNL 149 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhCC-cc--ccCCeeccccccCCcceeEEEEEcCCC-------cE-EEeeeE
Confidence 01246899999999999999983 33 8999999663322222333 222222 47 899999
Q ss_pred EEecCCCCCCCCCCC-CCccccccCCCCCccEEeccCCCCC-CCCCCC-eEEEECCCcCHHHHHHHHHhc----cCeEEE
Q 022182 142 VVASGETTNPFTPDI-RGLCSFCSSATGTGEVIHSTQYKNG-KPYGGK-NVLVVGSGNSGMEIALDLANH----AAKTSL 214 (301)
Q Consensus 142 VlAtG~~~~p~~p~~-~g~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~v~VvG~G~~g~e~a~~l~~~----g~~v~~ 214 (301)
|+++| ..|.+|+. ..+. ..+++|+.++... .+...+ .|.|||+|.||+|+...|... ..++.|
T Consensus 150 Vlg~G--~~P~IP~~f~~l~--------~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~w 219 (436)
T COG3486 150 VLGVG--TQPYIPPCFRSLI--------GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNW 219 (436)
T ss_pred EEccC--CCcCCChHHhCcC--------ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCcccee
Confidence 99999 88999853 2222 3479999999743 333344 499999999999999999754 345899
Q ss_pred EEecCceEeehhhHH
Q 022182 215 VVRSPVHVLSREMVY 229 (301)
Q Consensus 215 ~~r~~~~~~~~~~~~ 229 (301)
+.|+. -++|.+..+
T Consensus 220 itR~~-gf~p~d~Sk 233 (436)
T COG3486 220 ITRSS-GFLPMDYSK 233 (436)
T ss_pred eeccC-CCCccccch
Confidence 99998 677766543
No 71
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.72 E-value=2.7e-17 Score=149.77 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=106.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+... ++. +....++..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g---------------ip~---------~~~~~~~~~ 197 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG---------------IPD---------FKLEKEVID 197 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec---------------CCc---------ccCCHHHHH
Confidence 35799999999999999999999999999999999988875432 111 111134555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+.+..+++.+ ++++.+.. + +.... .. ..||+||+|||. ..+..+.+||.+.
T Consensus 198 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~~d~vvlAtGa-~~~~~l~ipG~~~---- 251 (471)
T PRK12810 198 RRIELMEAEGIEF--RTNVEVGK-D---------ITAEE--------LL-AEYDAVFLGTGA-YKPRDLGIPGRDL---- 251 (471)
T ss_pred HHHHHHHhCCcEE--EeCCEECC-c---------CCHHH--------HH-hhCCEEEEecCC-CCCCcCCCCCccC----
Confidence 5556667777655 77765521 0 11111 23 467999999994 2366677888652
Q ss_pred CCCCccEEeccC-------------CCCCCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEec
Q 022182 166 ATGTGEVIHSTQ-------------YKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (301)
Q Consensus 166 ~~~~g~~~~~~~-------------~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~ 218 (301)
.| +.+..+ ........+++|+|||+|++|+|+|..+.+.|. +|++..+.
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 252 ---DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred ---CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 22 222111 011123468999999999999999998888876 68855443
No 72
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.71 E-value=2.9e-17 Score=145.22 Aligned_cols=182 Identities=15% Similarity=0.239 Sum_probs=116.6
Q ss_pred cEEEECCChHHHHHHHHHhhC---CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 9 EVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~---g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
+|||||||++|+.+|.+|+++ +.+|+|+|+++..- |... ++.......+..++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~---------------~~~~~~g~~~~~~~~~ 58 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGM---------------LPGMIAGHYSLDEIRI 58 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccch---------------hhHHHheeCCHHHhcc
Confidence 589999999999999999754 68999999887521 1100 0000011122344555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
.+.+++++++++. . ..+|+.++.++ .+|.+.++ .+ +.||+||+||| +.|..|.+||....
T Consensus 59 ~~~~~~~~~gv~~--~-~~~v~~id~~~----~~V~~~~g-------~~-~~yD~LviAtG--~~~~~~~i~g~~~~--- 118 (364)
T TIGR03169 59 DLRRLARQAGARF--V-IAEATGIDPDR----RKVLLANR-------PP-LSYDVLSLDVG--STTPLSGVEGAADL--- 118 (364)
T ss_pred cHHHHHHhcCCEE--E-EEEEEEEeccc----CEEEECCC-------Cc-ccccEEEEccC--CCCCCCCCCccccc---
Confidence 5666777777654 4 45799998754 25767654 46 89999999999 88888888885321
Q ss_pred CCCCccEEeccC----------CCCC--CCCCCCeEEEECCCcCHHHHHHHHHhc----c--CeEEEEEecCceEeehhh
Q 022182 166 ATGTGEVIHSTQ----------YKNG--KPYGGKNVLVVGSGNSGMEIALDLANH----A--AKTSLVVRSPVHVLSREM 227 (301)
Q Consensus 166 ~~~~g~~~~~~~----------~~~~--~~~~~~~v~VvG~G~~g~e~a~~l~~~----g--~~v~~~~r~~~~~~~~~~ 227 (301)
++.... +... ....+++++|||+|.+|+|+|..|.+. | .+|+++ +.+ .+++...
T Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~-~~l~~~~ 190 (364)
T TIGR03169 119 ------AVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA-SLLPGFP 190 (364)
T ss_pred ------ccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC-cccccCC
Confidence 110000 0000 012357999999999999999999853 3 489999 554 5666554
Q ss_pred HHHHHHHhhcCCH
Q 022182 228 VYLGVVLFKYVPF 240 (301)
Q Consensus 228 ~~~~~~~~~~l~~ 240 (301)
.++...+.+.+..
T Consensus 191 ~~~~~~~~~~l~~ 203 (364)
T TIGR03169 191 AKVRRLVLRLLAR 203 (364)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.71 E-value=2e-16 Score=148.91 Aligned_cols=171 Identities=15% Similarity=0.208 Sum_probs=116.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||+||+|+++|..|++.|++|+|||+.+.+||.|.+. .+.+.+ + .++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g---------------ip~~~l--------~-~~~~~ 364 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG---------------IPPFKL--------D-KTVLS 364 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc---------------CCcccC--------C-HHHHH
Confidence 36899999999999999999999999999999999999987643 111111 1 34555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.++.+++++ ++++.+.. .+.+.+ .. ..||.|++|||+. .+..+.+||.+.
T Consensus 365 ~~~~~~~~~Gv~~--~~~~~v~~----------~~~~~~--------l~-~~~DaV~latGa~-~~~~~~i~g~~~---- 418 (639)
T PRK12809 365 QRREIFTAMGIDF--HLNCEIGR----------DITFSD--------LT-SEYDAVFIGVGTY-GMMRADLPHEDA---- 418 (639)
T ss_pred HHHHHHHHCCeEE--EcCCccCC----------cCCHHH--------HH-hcCCEEEEeCCCC-CCCCCCCCCCcc----
Confidence 5666777778665 77765521 011211 12 4579999999963 344456777542
Q ss_pred CCCCccEEec-----------cCCCC-----CCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecCceEeehhhH
Q 022182 166 ATGTGEVIHS-----------TQYKN-----GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~-----------~~~~~-----~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~~~~~~~~~~ 228 (301)
.| +++. ..... .....+++|+|+|+|.+|+|.|..+.+.|. +||+++|++...+|....
T Consensus 419 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~ 494 (639)
T PRK12809 419 ---PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRK 494 (639)
T ss_pred ---CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 23 2211 00110 123457999999999999999999888885 799999987555676554
Q ss_pred HH
Q 022182 229 YL 230 (301)
Q Consensus 229 ~~ 230 (301)
++
T Consensus 495 e~ 496 (639)
T PRK12809 495 EV 496 (639)
T ss_pred HH
Confidence 44
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.70 E-value=4.5e-16 Score=152.65 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=112.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.+||+||||||+|++||..|++.|++|+|+|+.+.+||.+.... ... + -.+..++...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---------------~~~------~-g~~~~~~~~~ 220 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---------------ETI------D-GKPAADWAAA 220 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---------------ccc------C-CccHHHHHHH
Confidence 57999999999999999999999999999999999998765321 000 0 0112233333
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEe--------ecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS--------NLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRG 158 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~--------~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g 158 (301)
+.+.+..++ .+.++.++.|..+.... ....+... .+... ..... +.++.||+||| +.+..|++||
T Consensus 221 ~~~~l~~~~-~v~v~~~t~V~~i~~~~--~v~~v~~~~~~~~~~~~~~~~-~~~~~-i~a~~VILATG--a~~r~~pipG 293 (985)
T TIGR01372 221 TVAELTAMP-EVTLLPRTTAFGYYDHN--TVGALERVTDHLDAPPKGVPR-ERLWR-IRAKRVVLATG--AHERPLVFAN 293 (985)
T ss_pred HHHHHhcCC-CcEEEcCCEEEEEecCC--eEEEEEEeeeccccccCCccc-cceEE-EEcCEEEEcCC--CCCcCCCCCC
Confidence 333333332 13337788887774311 11111100 00000 01136 89999999999 6777788888
Q ss_pred ccccccCCCCCccEEecc---CCCC-CCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEecC
Q 022182 159 LCSFCSSATGTGEVIHST---QYKN-GKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRSP 219 (301)
Q Consensus 159 ~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~~ 219 (301)
.+. .| ++... .+.. .....+++|+|||+|.+|+|+|..|.+.|. .|+++++++
T Consensus 294 ~~~-------pg-V~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 294 NDR-------PG-VMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCC-------CC-cEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 653 23 22221 1111 123457999999999999999999999995 578888776
No 75
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.70 E-value=1e-16 Score=145.24 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=154.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhC---CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (301)
+.+++|||.|++|..+..++.+. -+++++|-.++++. |....++.- .+.--+.+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n-------Y~Ri~Ls~v--------------l~~~~~~edi 61 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN-------YNRILLSSV--------------LAGEKTAEDI 61 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc-------ccceeeccc--------------cCCCccHHHH
Confidence 35899999999999999999884 56899998887643 544433210 0111233455
Q ss_pred HHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccc
Q 022182 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFC 163 (301)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~ 163 (301)
.-.-.+++++.++.. +.+.+|+.|+.+. ..|+++.+ .+ +.||.||+||| |.|++|++||.+.+
T Consensus 62 ~l~~~dwy~~~~i~L--~~~~~v~~idr~~----k~V~t~~g-------~~-~~YDkLilATG--S~pfi~PiPG~~~~- 124 (793)
T COG1251 62 SLNRNDWYEENGITL--YTGEKVIQIDRAN----KVVTTDAG-------RT-VSYDKLIIATG--SYPFILPIPGSDLP- 124 (793)
T ss_pred hccchhhHHHcCcEE--EcCCeeEEeccCc----ceEEccCC-------cE-eecceeEEecC--ccccccCCCCCCCC-
Confidence 555566777878655 9999999998755 55777766 56 89999999999 99999999998864
Q ss_pred cCCCCCccEEeccCCCCCC-----CCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHH-HHHHHhhc
Q 022182 164 SSATGTGEVIHSTQYKNGK-----PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVY-LGVVLFKY 237 (301)
Q Consensus 164 ~~~~~~g~~~~~~~~~~~~-----~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~ 237 (301)
.++....+.+.. ....++-+|||+|.-|+|+|..|...|-++++++-.+ ++|-+..++ ....|.+.
T Consensus 125 -------~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~-~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 125 -------GVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAP-TLMERQLDRTAGRLLRRK 196 (793)
T ss_pred -------CeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecc-hHHHHhhhhHHHHHHHHH
Confidence 244444433211 1124567999999999999999999999999999999 788777764 45556667
Q ss_pred CCHHHHHHHHHHHHHHHhcCcc
Q 022182 238 VPFGWVDTLMVMLSRLVYGDLS 259 (301)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~ 259 (301)
++..++++.+++.+..+.++..
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~ 218 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDK 218 (793)
T ss_pred HHhhcceeecccchhhhhcCcc
Confidence 8999999999888888887433
No 76
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.69 E-value=7.5e-17 Score=139.79 Aligned_cols=201 Identities=22% Similarity=0.258 Sum_probs=141.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC--CeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
...++|||+|++|..|+..+++.|. +++++-++..+. |...+ .++.... ...++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p-------ydr~~--Ls~~~~~--------------~~~~~a 130 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP-------YDRAR--LSKFLLT--------------VGEGLA 130 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc-------ccchh--cccceee--------------cccccc
Confidence 4589999999999999999999986 777777655421 22211 1111000 011222
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
....++.++++++. ++++.|+.++... .+|.+.++ +. +.|++++|||| +.+..|++||.+..
T Consensus 131 ~r~~e~Yke~gIe~--~~~t~v~~~D~~~----K~l~~~~G-------e~-~kys~LilATG--s~~~~l~~pG~~~~-- 192 (478)
T KOG1336|consen 131 KRTPEFYKEKGIEL--ILGTSVVKADLAS----KTLVLGNG-------ET-LKYSKLIIATG--SSAKTLDIPGVELK-- 192 (478)
T ss_pred ccChhhHhhcCceE--EEcceeEEeeccc----cEEEeCCC-------ce-eecceEEEeec--CccccCCCCCcccc--
Confidence 22334566778777 9999999998755 56777776 67 89999999999 78999999998732
Q ss_pred CCCCCccEEeccCCCCC-----CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH-HHHHHHhhcC
Q 022182 165 SATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV-YLGVVLFKYV 238 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~-~~~~~~~~~l 238 (301)
.+....+..+. ....+++|+++|+|.+|+|+|..|...+.+||++++.+ |.+|+... .+++.+...+
T Consensus 193 ------nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~-~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 193 ------NVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP-WLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred ------ceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCc-cchhhhhhHHHHHHHHHHH
Confidence 23333333221 12236889999999999999999999999999999999 89997543 6666666666
Q ss_pred CHHHHHHHHHHHHHHHh
Q 022182 239 PFGWVDTLMVMLSRLVY 255 (301)
Q Consensus 239 ~~~~~~~~~~~~~~~~~ 255 (301)
.+.+++..+.+....+.
T Consensus 266 e~kgVk~~~~t~~s~l~ 282 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLE 282 (478)
T ss_pred HhcCeEEEEecceeecc
Confidence 66666666655554443
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.68 E-value=5.4e-16 Score=141.40 Aligned_cols=160 Identities=22% Similarity=0.260 Sum_probs=108.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||||++|+++|..|++.|++|+|+|+.+.+||...+. ++. +....++..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g---------------ip~---------~~~~~~~~~ 197 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG---------------IPN---------MKLDKAIVD 197 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc---------------CCC---------ccCCHHHHH
Confidence 34799999999999999999999999999999999888764321 111 111124555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
+..+.++.+++.. ++++.+. .+ +.... .. ..||.||+|||.. .|..+++||.+.
T Consensus 198 ~~~~~~~~~Gv~~--~~~~~v~-~~---------~~~~~--------~~-~~~d~VilAtGa~-~~~~l~i~G~~~---- 251 (485)
T TIGR01317 198 RRIDLLSAEGIDF--VTNTEIG-VD---------ISADE--------LK-EQFDAVVLAGGAT-KPRDLPIPGREL---- 251 (485)
T ss_pred HHHHHHHhCCCEE--ECCCEeC-Cc---------cCHHH--------HH-hhCCEEEEccCCC-CCCcCCCCCcCC----
Confidence 5556667777655 7777663 11 11111 23 5689999999942 377778888642
Q ss_pred CCCCccEEeccC--------CC-------CCCCCCCCeEEEECCCcCHHHHHHHHHhcc-CeEEEEEecC
Q 022182 166 ATGTGEVIHSTQ--------YK-------NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (301)
Q Consensus 166 ~~~~g~~~~~~~--------~~-------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 219 (301)
.| +....+ .. ......+++|+|||+|++|+|+|..+.+.| .+|+++++.+
T Consensus 252 ---~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 252 ---KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred ---CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 22 111100 00 012246899999999999999988887776 5799998876
No 78
>PRK13984 putative oxidoreductase; Provisional
Probab=99.67 E-value=5.7e-16 Score=145.42 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=110.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||+|++|+++|..|.++|++|+|+|+.+..||.+.+. ++.+ ....++..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~---------------i~~~---------~~~~~~~~ 337 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG---------------IPSY---------RLPDEALD 337 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec---------------CCcc---------cCCHHHHH
Confidence 46789999999999999999999999999999999888765432 1111 11134455
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+.++.+++.. ++++.|.. + +.... .. ..||+||+|||+ ..|..+++||.+.
T Consensus 338 ~~~~~~~~~gv~~--~~~~~v~~-~---------~~~~~--------~~-~~yD~vilAtGa-~~~r~l~i~G~~~---- 391 (604)
T PRK13984 338 KDIAFIEALGVKI--HLNTRVGK-D---------IPLEE--------LR-EKHDAVFLSTGF-TLGRSTRIPGTDH---- 391 (604)
T ss_pred HHHHHHHHCCcEE--ECCCEeCC-c---------CCHHH--------HH-hcCCEEEEEcCc-CCCccCCCCCcCC----
Confidence 5555667777655 77776621 0 11111 23 568999999995 2356778888653
Q ss_pred CCCCccEEeccCCCC----------CCCCCCCeEEEECCCcCHHHHHHHHHhccC------eEEEEEec-CceEeehhhH
Q 022182 166 ATGTGEVIHSTQYKN----------GKPYGGKNVLVVGSGNSGMEIALDLANHAA------KTSLVVRS-PVHVLSREMV 228 (301)
Q Consensus 166 ~~~~g~~~~~~~~~~----------~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~------~v~~~~r~-~~~~~~~~~~ 228 (301)
.+ +++..++.. .....+++|+|||+|.+|+|+|..+.+.+. +|+++... ....+|....
T Consensus 392 ---~g-v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~ 467 (604)
T PRK13984 392 ---PD-VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADME 467 (604)
T ss_pred ---cC-eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHH
Confidence 12 222221110 012246899999999999999999998753 68886432 2234454443
Q ss_pred H
Q 022182 229 Y 229 (301)
Q Consensus 229 ~ 229 (301)
+
T Consensus 468 e 468 (604)
T PRK13984 468 E 468 (604)
T ss_pred H
Confidence 3
No 79
>PRK09897 hypothetical protein; Provisional
Probab=99.66 E-value=6.2e-15 Score=134.46 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=114.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCC-cc-cCCCC-CCceEEecc--------cccccCCCC------
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA-SI-WKKYS-YDRLRLHLA--------KQFCQLPHL------ 68 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~g-g~-w~~~~-~~~~~~~~~--------~~~~~~~~~------ 68 (301)
++|+|||||++|+++|.+|.+.+ .+|+|||++..+| |. |.... .+.+..+.. ..+..+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998764 5899999988777 43 33211 111111111 011111000
Q ss_pred ---C---CCCCCCCCCCHHHHHHHHHHHHHHh-------CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 69 ---P---FPSSYPMFVSRAQFIEHLDHYVSHF-------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 69 ---~---~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
. ...+...|+++..+.+|+.+....+ +....++.+++|+.++..+ +.|.|++.++. ..
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~V~t~~gg------~~- 152 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVMLATNQDL------PS- 152 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEEEEECCCC------eE-
Confidence 0 0001134677766666665544332 3234446788999998765 66888775431 45
Q ss_pred EeeCEEEEecCCCCCCCCCCCCCccccccCCCCCccEEeccCCCC--CCCCCCCeEEEECCCcCHHHHHHHHHhcc----
Q 022182 136 YSGRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIHSTQYKN--GKPYGGKNVLVVGSGNSGMEIALDLANHA---- 209 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~v~VvG~G~~g~e~a~~l~~~g---- 209 (301)
+.+|.||+|||.. .|..+ ++...| + ...|.. .....+.+|+|+|.|.+++|++..|...|
T Consensus 153 i~aD~VVLAtGh~-~p~~~--~~~~~y----------i-~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~ 218 (534)
T PRK09897 153 ETFDLAVIATGHV-WPDEE--EATRTY----------F-PSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI 218 (534)
T ss_pred EEcCEEEECCCCC-CCCCC--hhhccc----------c-CCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhcCCcee
Confidence 7899999999962 23221 111111 1 111111 11223689999999999999999988552
Q ss_pred -----------------CeEEEEEecC
Q 022182 210 -----------------AKTSLVVRSP 219 (301)
Q Consensus 210 -----------------~~v~~~~r~~ 219 (301)
.+++++.|++
T Consensus 219 ~~~~~~~~l~y~~sg~~~~I~a~SRrG 245 (534)
T PRK09897 219 EDDKQHVVFHRDNASEKLNITLMSRTG 245 (534)
T ss_pred ccCCCcceeeecCCCCCceEEEEeCCC
Confidence 2688899987
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.64 E-value=1.6e-15 Score=143.81 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=35.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...++|+||||||||+++|..|++.|++|+++|+.+..|+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 3567999999999999999999999999999998765443
No 81
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.63 E-value=3e-15 Score=139.31 Aligned_cols=170 Identities=21% Similarity=0.286 Sum_probs=112.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||+||+|+++|..|+++|++|+++|+.+.+||.+.+. ++.+.++ .++.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g---------------ip~~~~~---------~~~~~ 191 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG---------------IPAYRLP---------REVLD 191 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec---------------CCCccCC---------HHHHH
Confidence 45799999999999999999999999999999999999876532 1211111 24445
Q ss_pred HHHHHHHHhCCCceeeeCcEE-EEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcccccc
Q 022182 86 HLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCS 164 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V-~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~ 164 (301)
...+.+.++++.. .+++.+ ..+.. .. .. ..+|.||+|||.. .+..+.++|.+.
T Consensus 192 ~~l~~~~~~Gv~~--~~~~~~~~~~~~-----------~~--------~~-~~~D~Vi~AtG~~-~~~~~~i~g~~~--- 245 (564)
T PRK12771 192 AEIQRILDLGVEV--RLGVRVGEDITL-----------EQ--------LE-GEFDAVFVAIGAQ-LGKRLPIPGEDA--- 245 (564)
T ss_pred HHHHHHHHCCCEE--EeCCEECCcCCH-----------HH--------HH-hhCCEEEEeeCCC-CCCcCCCCCCcc---
Confidence 5555666777554 666544 22111 00 12 3469999999953 233345666432
Q ss_pred CCCCCccEEeccCCC-----CCCCCCCCeEEEECCCcCHHHHHHHHHhcc-CeEEEEEecCceEeehhhHHH
Q 022182 165 SATGTGEVIHSTQYK-----NGKPYGGKNVLVVGSGNSGMEIALDLANHA-AKTSLVVRSPVHVLSREMVYL 230 (301)
Q Consensus 165 ~~~~~g~~~~~~~~~-----~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~~~~~~~~~~~~ 230 (301)
.| +++...+. ......+++++|+|+|.+|+|.+..+.+.+ .+|++++|.+...+|....++
T Consensus 246 ----~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~ 312 (564)
T PRK12771 246 ----AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI 312 (564)
T ss_pred ----CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH
Confidence 22 22211111 113345899999999999999999998888 679999998754555544433
No 82
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.61 E-value=1.2e-14 Score=129.34 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHh-hCCCCeEEEecCCCCCcccCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLS-LQSIPYVILERENCYASIWKKY 49 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~vie~~~~~gg~w~~~ 49 (301)
.+++|+||||||+|+.+|.+|. +.|++|+|||+.+.+||.+++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 4578999999999999999875 5699999999999999987754
No 83
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.59 E-value=1.6e-13 Score=120.15 Aligned_cols=199 Identities=19% Similarity=0.230 Sum_probs=123.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCC---CCeEEEecCCCCCc-ccCCCCCCceEEecccccccC--CCCC------------
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS-IWKKYSYDRLRLHLAKQFCQL--PHLP------------ 69 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g---~~v~vie~~~~~gg-~w~~~~~~~~~~~~~~~~~~~--~~~~------------ 69 (301)
++|+|||+|++|+++|.+|.+.- ..+.|||+...+|. +-....-+...++.+..-+.. ++.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999862 23999999998875 333322223333433332221 2211
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHHHHh----CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEee
Q 022182 70 -------FPSSYPMFVSRAQFIEHLDHYVSHF----NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (301)
Q Consensus 70 -------~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~a 138 (301)
...+-+.|+++.-+.+|+.++...+ .-.......++++++...+..+.|.+...++ .. ..|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g-------~~-~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG-------PS-EIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC-------Ce-eee
Confidence 1223457888888888887766544 2110113455666666654346677777765 45 689
Q ss_pred CEEEEecCCCCCCCCCCCCCccccccCCCCCccE-EeccCCCCC---CCCCCCeEEEECCCcCHHHHHHHHHhccC--eE
Q 022182 139 RFLVVASGETTNPFTPDIRGLCSFCSSATGTGEV-IHSTQYKNG---KPYGGKNVLVVGSGNSGMEIALDLANHAA--KT 212 (301)
Q Consensus 139 d~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~-~~~~~~~~~---~~~~~~~v~VvG~G~~g~e~a~~l~~~g~--~v 212 (301)
|.+|+|||+ +.|..+.. ...+ .+.. ++...|... ......+|+|+|+|.+-+|....|.++|. ++
T Consensus 154 d~~Vlatgh-~~~~~~~~--~~~~------~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~I 224 (474)
T COG4529 154 DIIVLATGH-SAPPADPA--ARDL------KGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPI 224 (474)
T ss_pred eEEEEeccC-CCCCcchh--hhcc------CCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccce
Confidence 999999996 32322221 1112 2211 222222211 12235679999999999999999999886 49
Q ss_pred EEEEecCceEeeh
Q 022182 213 SLVVRSPVHVLSR 225 (301)
Q Consensus 213 ~~~~r~~~~~~~~ 225 (301)
|++.|++ ++|+
T Consensus 225 t~iSRrG--l~~~ 235 (474)
T COG4529 225 TAISRRG--LVPR 235 (474)
T ss_pred EEEeccc--cccC
Confidence 9999998 4443
No 84
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.56 E-value=6.1e-14 Score=118.15 Aligned_cols=171 Identities=21% Similarity=0.165 Sum_probs=108.8
Q ss_pred cCCCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHH
Q 022182 4 QAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRA 81 (301)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (301)
+....+|+|||+||||+.+|..|.++ +..|.|+|+.+.+.|.-++.. .|.+|.-+
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV-----------------------APDHpEvK 73 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV-----------------------APDHPEVK 73 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc-----------------------CCCCcchh
Confidence 34456999999999999999999985 689999999998887755431 12334444
Q ss_pred HHHHHHHHHHHHhCCCceeeeCcEE-EEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcc
Q 022182 82 QFIEHLDHYVSHFNIGPSIRYQRSV-ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (301)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V-~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~ 160 (301)
...+-+.+.+++..... ..|.+| .. +.+.+- + -.||.||+|.|+ ..++..+|||.+
T Consensus 74 nvintFt~~aE~~rfsf--~gNv~vG~d-----------vsl~eL--------~-~~ydavvLaYGa-~~dR~L~IPGe~ 130 (468)
T KOG1800|consen 74 NVINTFTKTAEHERFSF--FGNVKVGRD-----------VSLKEL--------T-DNYDAVVLAYGA-DGDRRLDIPGEE 130 (468)
T ss_pred hHHHHHHHHhhccceEE--Eecceeccc-----------ccHHHH--------h-hcccEEEEEecC-CCCcccCCCCcc
Confidence 55566666666644322 444433 11 223221 2 357999999996 456777899875
Q ss_pred cc--ccCCCCCccEEeccCCC-CCCCCCCCeEEEECCCcCHHHHHHHHHhc----------------------cCeEEEE
Q 022182 161 SF--CSSATGTGEVIHSTQYK-NGKPYGGKNVLVVGSGNSGMEIALDLANH----------------------AAKTSLV 215 (301)
Q Consensus 161 ~~--~~~~~~~g~~~~~~~~~-~~~~~~~~~v~VvG~G~~g~e~a~~l~~~----------------------g~~v~~~ 215 (301)
.- .|+..+.+..--..+.. ...++..++|+|||.|+.++|+|..|... -++|+++
T Consensus 131 l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lv 210 (468)
T KOG1800|consen 131 LSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLV 210 (468)
T ss_pred cccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEE
Confidence 21 11111122111011111 12345589999999999999999988531 1468899
Q ss_pred EecCc
Q 022182 216 VRSPV 220 (301)
Q Consensus 216 ~r~~~ 220 (301)
.|++.
T Consensus 211 gRRgp 215 (468)
T KOG1800|consen 211 GRRGP 215 (468)
T ss_pred eccCc
Confidence 99873
No 85
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.55 E-value=3.5e-14 Score=121.46 Aligned_cols=214 Identities=17% Similarity=0.121 Sum_probs=136.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
.+++|||+|+|.+|.+.+..|...-++|+++.+++.+-=+|-. |...-.-.....+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLL----------------------pS~~vGTve~rSIvE 111 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLL----------------------PSTTVGTVELRSIVE 111 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeecc----------------------CCccccceeehhhhh
Confidence 4679999999999999999999999999999988764322211 111111222234555
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
-....++.-.-..+ .+..+...++.+. ....+....+++.. .... +.||+||+|+| ..++.+.+||+...+
T Consensus 112 PIr~i~r~k~~~~~-y~eAec~~iDp~~--k~V~~~s~t~~~~~-~e~~-i~YDyLViA~G--A~~~TFgipGV~e~~-- 182 (491)
T KOG2495|consen 112 PIRAIARKKNGEVK-YLEAECTKIDPDN--KKVHCRSLTADSSD-KEFV-IGYDYLVIAVG--AEPNTFGIPGVEENA-- 182 (491)
T ss_pred hHHHHhhccCCCce-EEecccEeecccc--cEEEEeeeccCCCc-ceee-ecccEEEEecc--CCCCCCCCCchhhch--
Confidence 55555554432222 4556667776644 33333322222111 2245 89999999999 778888999876531
Q ss_pred CCCCccEEeccCC----------CC------CCCCCCCeEEEECCCcCHHHHHHHHHhc--------------cCeEEEE
Q 022182 166 ATGTGEVIHSTQY----------KN------GKPYGGKNVLVVGSGNSGMEIALDLANH--------------AAKTSLV 215 (301)
Q Consensus 166 ~~~~g~~~~~~~~----------~~------~~~~~~~~v~VvG~G~~g~e~a~~l~~~--------------g~~v~~~ 215 (301)
.+-..+-+.++. .+ ++...--+++|||||.+|+|+|.+|+.. -.+||++
T Consensus 183 -~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLi 261 (491)
T KOG2495|consen 183 -HFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLI 261 (491)
T ss_pred -hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEee
Confidence 001111121111 11 1111123689999999999999999763 1468999
Q ss_pred EecCceEeehhhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 022182 216 VRSPVHVLSREMVYLGVVLFKYVPFGWVDTLMVMLSR 252 (301)
Q Consensus 216 ~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 252 (301)
+..| .+|+.++.++....++.+....++....+.++
T Consensus 262 EA~d-~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk 297 (491)
T KOG2495|consen 262 EAAD-HILNMFDKRLVEYAENQFVRDGIDLDTGTMVK 297 (491)
T ss_pred ccch-hHHHHHHHHHHHHHHHHhhhccceeecccEEE
Confidence 9999 89999999998888888877777766554443
No 86
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.54 E-value=3e-14 Score=127.32 Aligned_cols=159 Identities=22% Similarity=0.308 Sum_probs=111.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+||||||+|+++|..|.+.|+.|+++|+.+..||...+. .|.+. ...++.+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG---------------IP~~k---------l~k~i~d 177 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG---------------IPDFK---------LPKDILD 177 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec---------------Cchhh---------ccchHHH
Confidence 34799999999999999999999999999999999999875543 22222 2235777
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...++.++.++++ ++++++-. .++.+.. . -.+|.|++|+|. ..|...++||.+.
T Consensus 178 ~~i~~l~~~Gv~~--~~~~~vG~----------~it~~~L--------~-~e~Dav~l~~G~-~~~~~l~i~g~d~---- 231 (457)
T COG0493 178 RRLELLERSGVEF--KLNVRVGR----------DITLEEL--------L-KEYDAVFLATGA-GKPRPLDIPGEDA---- 231 (457)
T ss_pred HHHHHHHHcCeEE--EEcceECC----------cCCHHHH--------H-HhhCEEEEeccc-cCCCCCCCCCcCC----
Confidence 7788888888554 77776621 1222221 1 234999999996 5677677888652
Q ss_pred CCCCccEEeccCC------------C--CCCCCCCCeEEEECCCcCHHHHHHHHHhccC-eEEEEEec
Q 022182 166 ATGTGEVIHSTQY------------K--NGKPYGGKNVLVVGSGNSGMEIALDLANHAA-KTSLVVRS 218 (301)
Q Consensus 166 ~~~~g~~~~~~~~------------~--~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~-~v~~~~r~ 218 (301)
+| +....++ . ......+++|+|||+|.+++|++....+.|. +|+.+++.
T Consensus 232 ---~g-v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~ 295 (457)
T COG0493 232 ---KG-VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRE 295 (457)
T ss_pred ---Cc-chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccc
Confidence 11 1111111 1 1122345999999999999999999999987 58888643
No 87
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.53 E-value=3.4e-14 Score=128.29 Aligned_cols=172 Identities=17% Similarity=0.283 Sum_probs=105.6
Q ss_pred HHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCC-CCHHHHHHH-HHHHHHHhCC
Q 022182 21 ATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMF-VSRAQFIEH-LDHYVSHFNI 96 (301)
Q Consensus 21 ~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~ 96 (301)
++|.+|+++ ..+|+|||+++.+.-. . +.++.+ .... ....++..+ ..++.+++++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~---------~-------~~l~~~-----~~g~~~~~~~~~~~~~~~~~~~~gv 59 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFA---------N-------CGLPYV-----IGGVIDDRNKLLAYTPEVFIKKRGI 59 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEE---------c-------CCCCeE-----eccccCCHHHcccCCHHHHHHhcCC
Confidence 368888876 4789999998854210 0 000000 0011 111233333 2345577776
Q ss_pred CceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe--eCEEEEecCCCCCCCCCCCCCccccccCCCCCccEEe
Q 022182 97 GPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS--GRFLVVASGETTNPFTPDIRGLCSFCSSATGTGEVIH 174 (301)
Q Consensus 97 ~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~--ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~~~g~~~~ 174 (301)
+. +.+++|+.++.++ . +|.+.+..++ .. +. ||+||+||| +.|..|++||.+. . .+++
T Consensus 60 ~~--~~~~~V~~id~~~--~--~v~~~~~~~~----~~-~~~~yd~lIiATG--~~p~~~~i~G~~~-------~-~v~~ 118 (427)
T TIGR03385 60 DV--KTNHEVIEVNDER--Q--TVVVRNNKTN----ET-YEESYDYLILSPG--ASPIVPNIEGINL-------D-IVFT 118 (427)
T ss_pred eE--EecCEEEEEECCC--C--EEEEEECCCC----CE-EecCCCEEEECCC--CCCCCCCCCCcCC-------C-CEEE
Confidence 65 7889999998644 3 3444432211 35 66 999999999 7888888998652 1 1332
Q ss_pred ccCCCCC-------CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHH
Q 022182 175 STQYKNG-------KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVL 234 (301)
Q Consensus 175 ~~~~~~~-------~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~ 234 (301)
.....+. ....+++|+|||+|.+|+|+|..|.+.|.+|+++++.+..+.+..+.++...+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~ 185 (427)
T TIGR03385 119 LRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIV 185 (427)
T ss_pred ECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHH
Confidence 2221110 12356899999999999999999999999999999988322344444444333
No 88
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.53 E-value=1.2e-13 Score=118.14 Aligned_cols=135 Identities=16% Similarity=0.209 Sum_probs=92.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc--------ccCC-CC--CCceEEecc---cc----cccCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-YS--YDRLRLHLA---KQ----FCQLPHL 68 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg--------~w~~-~~--~~~~~~~~~---~~----~~~~~~~ 68 (301)
.+||+||||||+|+.||..+++.|.+|+|||+.+.+|- -++- +. +.....+.| .. +..|...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 57999999999999999999999999999999997763 2211 00 111111111 00 0000000
Q ss_pred -----------CC--CCCCCCCC---CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 022182 69 -----------PF--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (301)
Q Consensus 69 -----------~~--~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 132 (301)
++ .+.-+.|| ...++.+.+...+++.++.+ +++++|.+++.++ ..+.+.+.++
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i--~~~~~v~~v~~~~--~~f~l~t~~g------- 151 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTI--RTRSRVSSVEKDD--SGFRLDTSSG------- 151 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEE--EecceEEeEEecC--ceEEEEcCCC-------
Confidence 00 00112344 46778888888888888776 9999999999876 7799998876
Q ss_pred EEEEeeCEEEEecCCCCCCCC
Q 022182 133 EEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 133 ~~~~~ad~vVlAtG~~~~p~~ 153 (301)
.+ +.||.+|+|||..|.|.+
T Consensus 152 ~~-i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 ET-VKCDSLILATGGKSWPKL 171 (408)
T ss_pred CE-EEccEEEEecCCcCCCCC
Confidence 57 999999999998777743
No 89
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.48 E-value=8.5e-13 Score=102.19 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=89.7
Q ss_pred EEECCChHHHHHHHHHhhC-----CCCeEEEecCCCC-CcccCCCCCCceEEecccccccC-CCCC--------------
Q 022182 11 IMVGAGTSGLATAACLSLQ-----SIPYVILERENCY-ASIWKKYSYDRLRLHLAKQFCQL-PHLP-------------- 69 (301)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~-----g~~v~vie~~~~~-gg~w~~~~~~~~~~~~~~~~~~~-~~~~-------------- 69 (301)
+|||+|++|++++.+|.+. ..+|+|||+++.. |+.|.....+...+|.+...+.. +..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 6999999999999999987 4589999997764 45787654555566655444333 2111
Q ss_pred --CCCCCCCCCCHHHHHHHHHHHHHHh------CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEE
Q 022182 70 --FPSSYPMFVSRAQFIEHLDHYVSHF------NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFL 141 (301)
Q Consensus 70 --~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~v 141 (301)
.......|+++..+.+|+.++.+.+ ++.+. ....+|+.++..+ +.|.|.+.++ .. +.||.|
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~-~~~~~V~~i~~~~--~~~~v~~~~g-------~~-~~~d~V 149 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVR-HVRAEVVDIRRDD--DGYRVVTADG-------QS-IRADAV 149 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEE-EEeeEEEEEEEcC--CcEEEEECCC-------CE-EEeCEE
Confidence 0112347889999999998877654 22222 3456888888866 6688888776 56 899999
Q ss_pred EEecCC
Q 022182 142 VVASGE 147 (301)
Q Consensus 142 VlAtG~ 147 (301)
|+|||.
T Consensus 150 vLa~Gh 155 (156)
T PF13454_consen 150 VLATGH 155 (156)
T ss_pred EECCCC
Confidence 999994
No 90
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.47 E-value=2.8e-13 Score=120.14 Aligned_cols=134 Identities=19% Similarity=0.289 Sum_probs=73.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc--------ccCCC----CCCceEEe---cccc----cccCC--
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKKY----SYDRLRLH---LAKQ----FCQLP-- 66 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg--------~w~~~----~~~~~~~~---~~~~----~~~~~-- 66 (301)
|||+||||||||+.||..|++.|.+|+|+|+++.+|- .++.. ........ .+.. +..++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999998762 11100 00000000 0000 00000
Q ss_pred ---------CCCC--CCCCCCCC---CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 022182 67 ---------HLPF--PSSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (301)
Q Consensus 67 ---------~~~~--~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 132 (301)
..++ .++-..|| ...++.+.+...+++.++.+ +++++|.++..++ ++.|.|.+++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i--~~~~~V~~i~~~~-~~~f~v~~~~~------- 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEI--HFNTRVKSIEKKE-DGVFGVKTKNG------- 150 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EE--E-S--EEEEEEET-TEEEEEEETTT-------
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEE--EeCCEeeeeeecC-CceeEeeccCc-------
Confidence 0000 00111222 46788888888889988776 9999999998765 24588888432
Q ss_pred EEEEeeCEEEEecCCCCCCC
Q 022182 133 EEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 133 ~~~~~ad~vVlAtG~~~~p~ 152 (301)
.. +.+|.||+|||..+.|.
T Consensus 151 ~~-~~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 151 GE-YEADAVILATGGKSYPK 169 (409)
T ss_dssp EE-EEESEEEE----SSSGG
T ss_pred cc-ccCCEEEEecCCCCccc
Confidence 67 89999999999766554
No 91
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.40 E-value=3.8e-12 Score=109.08 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=84.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCC-----CCceEE-------e-cccccccCC----CCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS-----YDRLRL-------H-LAKQFCQLP----HLPF 70 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~-----~~~~~~-------~-~~~~~~~~~----~~~~ 70 (301)
+||+|||||++|+++|..|++.|.+|+|+|+....+..|.... ...+.. . ....+.... ..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 6999999999999999999999999999999986654322110 000000 0 000000000 1111
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 71 PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
+.......++.++.+.+.+.+.+.++++ +++++++.+..++ +.+.+.+.++. .+ +.+|.||+|+|.++
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~--~~~~~v~~~~~~~--~~~~~~~~~~~------~~-~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAEL--RLGTTVLDVEIHD--DRVVVIVRGGE------GT-VTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEE--EeCcEEeeEEEeC--CEEEEEEcCcc------EE-EEeCEEEECCCcch
Confidence 1111223578889999999888887665 8999999987765 44555544321 56 89999999999754
No 92
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.35 E-value=1.1e-11 Score=103.69 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=86.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc-ccCCC-CCCceEEecc-cccccCCCCCCCCCCC--CCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg-~w~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 80 (301)
..+||+||||||+|+++|..|++.|++|+|+|+...+|| .|... .++....... ..+..--..++..... ...++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccH
Confidence 468999999999999999999999999999999988765 45322 1111111100 0000001111111101 12467
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEee------cCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASN------LLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~------~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.++...+.+.+.+.++.+ ++++.|+.+..++++..+.+.+.. +... +..+ +.++.||+|||+++
T Consensus 104 ~~l~~~L~~~A~~~Gv~I--~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~--~~~~-i~Ak~VI~ATG~~a 173 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKI--FNGVSVEDVILREDPRVAGVVINWTPVEMAGLHV--DPLT-IEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHcCCEE--EcCceeceeeEeCCCcEEEEEEccccccccCCCC--CcEE-EEcCEEEEEeCCCc
Confidence 788888888888888665 889999988765432223333221 1000 1256 89999999999654
No 93
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.34 E-value=2.3e-11 Score=108.49 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=83.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecC-CC---CCcccCC--------------CCCCceEEecccccccCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC---YASIWKK--------------YSYDRLRLHLAKQFCQLPHLP 69 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~-~~---~gg~w~~--------------~~~~~~~~~~~~~~~~~~~~~ 69 (301)
|||+||||||+|+++|..|++.|++|+|+|+. .. .|+.... +.+....+..+.........+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999987 21 1211110 011112222211100000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecC---CCCceeEEEEeeCEEEEecC
Q 022182 70 FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPGREIEEYYSGRFLVVASG 146 (301)
Q Consensus 70 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~---~~~~~~~~~~~ad~vVlAtG 146 (301)
.+..+....++..+.+++.+.+.+.+.++ +. +.|+++..++ +.+.|++.++. ++ +..+ +.++.||.|+|
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v--~~-~~v~~v~~~~--~~~~v~~~~~~~~~~~--~~~~-i~a~~VI~AdG 152 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAEL--IH-GLFLKLERDR--DGVTLTYRTPKKGAGG--EKGS-VEADVVIGADG 152 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEE--Ee-eEEEEEEEcC--CeEEEEEEeccccCCC--cceE-EEeCEEEECCC
Confidence 11111123688999999999988888765 44 4688887654 56777766410 10 1146 89999999999
Q ss_pred CCC
Q 022182 147 ETT 149 (301)
Q Consensus 147 ~~~ 149 (301)
.+|
T Consensus 153 ~~S 155 (388)
T TIGR02023 153 ANS 155 (388)
T ss_pred CCc
Confidence 765
No 94
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.34 E-value=1.9e-11 Score=101.97 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=87.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC-cccCCCC-CCceEEecc-cccccCCCCCCCCCCC--CCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKYS-YDRLRLHLA-KQFCQLPHLPFPSSYP--MFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g-g~w~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~ 80 (301)
..+||+||||||+|+++|..|++.|.+|+|+|++..+| +.|.... ++......+ ..+......++..... ...++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~ 99 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS 99 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence 36899999999999999999999999999999999875 4664321 111111100 1111111112211111 12366
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCC-CcEEEEEeec----CCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNL----LSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~-~~~~V~~~~~----~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.++...+.+.+.+.++.+ ++++.|+.+..++.. ...-|.+... .+...+..+ +.++.||.|||..+
T Consensus 100 ~el~~~L~~~a~e~GV~I--~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~-i~Ak~VVdATG~~a 170 (254)
T TIGR00292 100 AEFISTLASKALQAGAKI--FNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLT-QRSRVVVDATGHDA 170 (254)
T ss_pred HHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEE-EEcCEEEEeecCCc
Confidence 788888888888888665 899999998875532 1222333211 000001257 89999999999543
No 95
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.33 E-value=3.6e-11 Score=108.44 Aligned_cols=132 Identities=18% Similarity=0.136 Sum_probs=82.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc------cCCCC----CCc---------eEEe------ccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKKYS----YDR---------LRLH------LAK 60 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~------w~~~~----~~~---------~~~~------~~~ 60 (301)
..+||+||||||+|+++|..|++.|++|+|+|+.+.+|.. ..... ++. .... ...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 3589999999999999999999999999999998765421 11000 000 0000 000
Q ss_pred cc--ccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 022182 61 QF--CQLPHLPF--PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (301)
Q Consensus 61 ~~--~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~ 136 (301)
.. ..+..... +........+.++.+++.+.+++.++.+ +.+++|+++..++ +.+.+...++ .+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--g~v~~v~~~g-------~~-i 151 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQL--ITGIRVDNLVQRD--GKVVGVEADG-------DV-I 151 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEE--ECCCEEEEEEEeC--CEEEEEEcCC-------cE-E
Confidence 00 00000000 0011122467888889999998888665 8899999987654 4443333332 46 8
Q ss_pred eeCEEEEecCCCC
Q 022182 137 SGRFLVVASGETT 149 (301)
Q Consensus 137 ~ad~vVlAtG~~~ 149 (301)
.++.||+|+|.++
T Consensus 152 ~A~~VI~A~G~~s 164 (428)
T PRK10157 152 EAKTVILADGVNS 164 (428)
T ss_pred ECCEEEEEeCCCH
Confidence 9999999999644
No 96
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.32 E-value=2.2e-13 Score=110.24 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=85.6
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH---
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE--- 85 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 85 (301)
||+|||||++|+++|..|++.+.+++++|+.+..+..... .+..... ........+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~---------~~~~~~~----------~~~~~~~~~~~~~~ 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGC---------IPSPLLV----------EIAPHRHEFLPARL 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSH---------HHHHHHH----------HHHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccc---------ccccccc----------cccccccccccccc
Confidence 7999999999999999999999999999887642210000 0000000 00000001110
Q ss_pred -HHHHHHHHhCCCceeeeCcEEEEEEEcCCC---CcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccc
Q 022182 86 -HLDHYVSHFNIGPSIRYQRSVESASYDEAT---NMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCS 161 (301)
Q Consensus 86 -~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~---~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~ 161 (301)
.+.+.+...++.. .+++++.+++..... ..+.+...... ...+ +.||+||+||| +.|..|.+||.+.
T Consensus 62 ~~~~~~~~~~~v~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~----~~~~-~~~d~lviAtG--~~~~~~~i~g~~~ 132 (201)
T PF07992_consen 62 FKLVDQLKNRGVEI--RLNAKVVSIDPESKRVVCPAVTIQVVETG----DGRE-IKYDYLVIATG--SRPRTPNIPGEEV 132 (201)
T ss_dssp GHHHHHHHHHTHEE--EHHHTEEEEEESTTEEEETCEEEEEEETT----TEEE-EEEEEEEEEST--EEEEEESSTTTTT
T ss_pred cccccccccceEEE--eeccccccccccccccccCcccceeeccC----CceE-ecCCeeeecCc--cccceeecCCCcc
Confidence 1122223445443 688999999876521 12233222211 1267 99999999999 7788888988631
Q ss_pred cccCCCCCccEEeccCCCCCCCCCCCeEEEEC
Q 022182 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVG 193 (301)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG 193 (301)
. .....+.++..+..... .+++++|||
T Consensus 133 ~----~~~~~~~~~~~~~~~~~-~~~~v~VvG 159 (201)
T PF07992_consen 133 A----YFLRGVDDAQRFLELLE-SPKRVAVVG 159 (201)
T ss_dssp E----CBTTSEEHHHHHHTHSS-TTSEEEEES
T ss_pred c----ccccccccccccccccc-ccccccccc
Confidence 1 00123444443333222 245999999
No 97
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.32 E-value=4.6e-12 Score=119.20 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=103.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..++|+|||+||+||+||-.|.+.|+.|+|+||.+++||...+. . |.+. ..+.+.+
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-i--------------pnmk---------ldk~vv~ 1839 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-I--------------PNMK---------LDKFVVQ 1839 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-C--------------Cccc---------hhHHHHH
Confidence 35799999999999999999999999999999999999986543 1 2111 1123445
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSS 165 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~ 165 (301)
...+...+-|+++ ..|+++-. .|..+.- . -..|.+|+|+|+ ..|+-.++||.+.- +
T Consensus 1840 rrv~ll~~egi~f--~tn~eigk----------~vs~d~l--------~-~~~daiv~a~gs-t~prdlpv~grd~k--g 1895 (2142)
T KOG0399|consen 1840 RRVDLLEQEGIRF--VTNTEIGK----------HVSLDEL--------K-KENDAIVLATGS-TTPRDLPVPGRDLK--G 1895 (2142)
T ss_pred HHHHHHHhhCceE--Eeeccccc----------cccHHHH--------h-hccCeEEEEeCC-CCCcCCCCCCcccc--c
Confidence 5555666667665 56655411 1222211 1 245899999996 56777778887631 0
Q ss_pred CCCCccEEeccC--CC------CCCCCCCCeEEEECCCcCHHHHHHHHHhccCe
Q 022182 166 ATGTGEVIHSTQ--YK------NGKPYGGKNVLVVGSGNSGMEIALDLANHAAK 211 (301)
Q Consensus 166 ~~~~g~~~~~~~--~~------~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~ 211 (301)
+.+.-..+|... .. .-...++|+|+|||+|.+|.|+...-.+.|.+
T Consensus 1896 v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1896 VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccc
Confidence 000111122110 00 11234689999999999999999888888865
No 98
>PRK08244 hypothetical protein; Provisional
Probab=99.32 E-value=6.9e-11 Score=108.73 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc-------------------ccCC-----CCCCceEEeccccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK-----YSYDRLRLHLAKQF 62 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg-------------------~w~~-----~~~~~~~~~~~~~~ 62 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... .|.. ..+...........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 81 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR 81 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence 47999999999999999999999999999999764321 1100 00111111000000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 63 CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
..+...+.+..+....++..+.+.+.+.+++.++.+ +++++++++..++ +.+++++.+.++. .+ +.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~-i~a~~vV 152 (493)
T PRK08244 82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEI--FRGAEVLAVRQDG--DGVEVVVRGPDGL----RT-LTSSYVV 152 (493)
T ss_pred CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeE--EeCCEEEEEEEcC--CeEEEEEEeCCcc----EE-EEeCEEE
Confidence 011111111111122466778888888888877655 8999999997755 4566666542211 46 8999999
Q ss_pred EecCCCC
Q 022182 143 VASGETT 149 (301)
Q Consensus 143 lAtG~~~ 149 (301)
.|+|.+|
T Consensus 153 gADG~~S 159 (493)
T PRK08244 153 GADGAGS 159 (493)
T ss_pred ECCCCCh
Confidence 9999766
No 99
>PRK06847 hypothetical protein; Provisional
Probab=99.31 E-value=7.3e-11 Score=104.85 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=86.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc----ccCC--------------------CCCCceEEeccc--
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS----IWKK--------------------YSYDRLRLHLAK-- 60 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg----~w~~--------------------~~~~~~~~~~~~-- 60 (301)
.+||+|||||++|+++|..|.+.|++|+|+|+++.... .... ..........+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56999999999999999999999999999999874321 0000 001111111100
Q ss_pred ccccCCCCCC-CCCC--CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe
Q 022182 61 QFCQLPHLPF-PSSY--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (301)
Q Consensus 61 ~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ 137 (301)
....++...+ ...+ .....+.++.+++.+.+...++.+ +++++|++++.++ +.+.|.+.++ .+ +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~~ 151 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADV--RLGTTVTAIEQDD--DGVTVTFSDG-------TT-GR 151 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEE--EeCCEEEEEEEcC--CEEEEEEcCC-------CE-EE
Confidence 0011110000 0011 123567888999998888877655 8999999998755 5677777654 56 89
Q ss_pred eCEEEEecCCCCCC
Q 022182 138 GRFLVVASGETTNP 151 (301)
Q Consensus 138 ad~vVlAtG~~~~p 151 (301)
+|.||.|+|.++..
T Consensus 152 ad~vI~AdG~~s~~ 165 (375)
T PRK06847 152 YDLVVGADGLYSKV 165 (375)
T ss_pred cCEEEECcCCCcch
Confidence 99999999976643
No 100
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.29 E-value=4.3e-11 Score=106.93 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC------CCCCceEE--------ecccccccCCC--C--
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------YSYDRLRL--------HLAKQFCQLPH--L-- 68 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~------~~~~~~~~--------~~~~~~~~~~~--~-- 68 (301)
.|||+||||||||++||+.|++.|++|+|+|+...+|.--.. ...+.+.. ........++. .
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~ 82 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAI 82 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEE
Confidence 589999999999999999999999999999998877641110 00000000 00000000000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
..+.......++..+.+++...+++.+.+. +..+++..+..++ +.+.+....+. .+ ++++.||.|+|..
T Consensus 83 ~~~~~~~y~v~R~~fd~~La~~A~~aGae~--~~~~~~~~~~~~~--~~~~~~~~~~~------~e-~~a~~vI~AdG~~ 151 (396)
T COG0644 83 EVPVGEGYIVDRAKFDKWLAERAEEAGAEL--YPGTRVTGVIRED--DGVVVGVRAGD------DE-VRAKVVIDADGVN 151 (396)
T ss_pred ecCCCceEEEEhHHhhHHHHHHHHHcCCEE--EeceEEEEEEEeC--CcEEEEEEcCC------EE-EEcCEEEECCCcc
Confidence 000000112468889999999999999877 8999999998866 44444444331 46 8999999999954
Q ss_pred C
Q 022182 149 T 149 (301)
Q Consensus 149 ~ 149 (301)
+
T Consensus 152 s 152 (396)
T COG0644 152 S 152 (396)
T ss_pred h
Confidence 3
No 101
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=110.67 Aligned_cols=184 Identities=21% Similarity=0.202 Sum_probs=111.6
Q ss_pred EEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHHH
Q 022182 10 VIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHL 87 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (301)
++|||+|++|+.+|..|.+. +.+++++..+...... .+-.+.... .......++....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~---------~~~~~~~~~-----------~~~~~~~~~~~~~ 60 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY---------RCPLSLYVG-----------GGIASLEDLRYPP 60 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC---------CCccchHHh-----------cccCCHHHhcccc
Confidence 58999999999999998885 5578878776643210 000000000 0000111111111
Q ss_pred HHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCccccccCCC
Q 022182 88 DHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLCSFCSSAT 167 (301)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~~~~~~~~ 167 (301)
. +....++.. +.+++|+.++... ..|.+.++ . +.+|++++||| +.|..++ +. +
T Consensus 61 ~-~~~~~~i~~--~~~~~v~~id~~~----~~v~~~~g--------~-~~yd~LvlatG--a~~~~~~--~~--~----- 113 (415)
T COG0446 61 R-FNRATGIDV--RTGTEVTSIDPEN----KVVLLDDG--------E-IEYDYLVLATG--ARPRPPP--IS--D----- 113 (415)
T ss_pred h-hHHhhCCEE--eeCCEEEEecCCC----CEEEECCC--------c-ccccEEEEcCC--CcccCCC--cc--c-----
Confidence 1 113445444 8888999997644 44666553 4 78899999999 6666655 11 1
Q ss_pred CCccEEeccCCCCCCC-----CCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhh-HHHHHHHhhcCCHH
Q 022182 168 GTGEVIHSTQYKNGKP-----YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREM-VYLGVVLFKYVPFG 241 (301)
Q Consensus 168 ~~g~~~~~~~~~~~~~-----~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~-~~~~~~~~~~l~~~ 241 (301)
...........+... ...++++|+|+|..|+|+|..+.+.|.+|++++..+ +++++.. .++...+.+.+...
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~-~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 114 -WEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD-RLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred -cCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc-ccchhhhhHHHHHHHHHHHHHC
Confidence 111222222221111 114899999999999999999999999999999999 6777765 45554444444443
Q ss_pred H
Q 022182 242 W 242 (301)
Q Consensus 242 ~ 242 (301)
.
T Consensus 192 g 192 (415)
T COG0446 192 G 192 (415)
T ss_pred C
Confidence 3
No 102
>PRK08013 oxidoreductase; Provisional
Probab=99.28 E-value=6.2e-11 Score=106.17 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=83.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC---c----------------------ccCCC------CCCceE
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---S----------------------IWKKY------SYDRLR 55 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g---g----------------------~w~~~------~~~~~~ 55 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+... | .|..- .+..+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 4799999999999999999999999999999876521 1 11110 011111
Q ss_pred Eecccccc--cCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCce
Q 022182 56 LHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (301)
Q Consensus 56 ~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 131 (301)
...+.... .+......... ....++..+.+.+.+.+... ++.+ +++++|++++.++ +.++|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~~v~v~~~~g------ 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITL--LAPAELQQVAWGE--NEAFLTLKDG------ 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEE--EcCCeeEEEEecC--CeEEEEEcCC------
Confidence 11110000 00000000000 11246778888887777765 4444 8999999997765 5567777654
Q ss_pred eEEEEeeCEEEEecCCCCC
Q 022182 132 IEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 132 ~~~~~~ad~vVlAtG~~~~ 150 (301)
.+ +.+|.||.|+|.+|.
T Consensus 153 -~~-i~a~lvVgADG~~S~ 169 (400)
T PRK08013 153 -SM-LTARLVVGADGANSW 169 (400)
T ss_pred -CE-EEeeEEEEeCCCCcH
Confidence 56 899999999997663
No 103
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.28 E-value=3.8e-11 Score=105.52 Aligned_cols=134 Identities=21% Similarity=0.230 Sum_probs=82.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-------------------cCC---CC--CC--ceEEecc--
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK---YS--YD--RLRLHLA-- 59 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-------------------w~~---~~--~~--~~~~~~~-- 59 (301)
+||+||||||+|+++|..|++.|++|+|||+.+..... |.. .. .. .......
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999998754211 100 00 00 0001110
Q ss_pred ---------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCc
Q 022182 60 ---------KQFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (301)
Q Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 130 (301)
.....+. ............+.++.+.+.+.+++.++.+ +++++++++..+. +..++.+....++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i--~~~~~v~~~~~d~--~~~~~~~~~~~~g-- 154 (356)
T PF01494_consen 82 DSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDI--RFGTRVVSIEQDD--DGVTVVVRDGEDG-- 154 (356)
T ss_dssp TSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEE--EESEEEEEEEEET--TEEEEEEEETCTC--
T ss_pred Cccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhh--eeeeecccccccc--cccccccccccCC--
Confidence 0000111 0001111123467889999999999988544 9999999998776 4555555554332
Q ss_pred eeEEEEeeCEEEEecCCCC
Q 022182 131 EIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 131 ~~~~~~~ad~vVlAtG~~~ 149 (301)
...+ +++|.||.|.|.+|
T Consensus 155 ~~~~-i~adlvVgADG~~S 172 (356)
T PF01494_consen 155 EEET-IEADLVVGADGAHS 172 (356)
T ss_dssp EEEE-EEESEEEE-SGTT-
T ss_pred ceeE-EEEeeeecccCccc
Confidence 2347 89999999999766
No 104
>PRK06834 hypothetical protein; Provisional
Probab=99.28 E-value=9.2e-11 Score=107.33 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=83.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC-------cccCC--------CCCCceE-----Ee---cccccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-------SIWKK--------YSYDRLR-----LH---LAKQFC 63 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g-------g~w~~--------~~~~~~~-----~~---~~~~~~ 63 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+... +.+.. ..++.+. .. ......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999876421 11110 0000000 00 000000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEE
Q 022182 64 QLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (301)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVl 143 (301)
.+...+....+........+.+.+.+.+++.++.+ ++++++++++.++ +.+.+++.++ .+ +.+|+||.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~v~~~~--~~v~v~~~~g-------~~-i~a~~vVg 150 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPI--YRGREVTGFAQDD--TGVDVELSDG-------RT-LRAQYLVG 150 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CeEEEEECCC-------CE-EEeCEEEE
Confidence 11111111111222355677788888888877555 9999999998765 5677776543 46 89999999
Q ss_pred ecCCCC
Q 022182 144 ASGETT 149 (301)
Q Consensus 144 AtG~~~ 149 (301)
|+|.+|
T Consensus 151 ADG~~S 156 (488)
T PRK06834 151 CDGGRS 156 (488)
T ss_pred ecCCCC
Confidence 999766
No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.28 E-value=8e-11 Score=105.24 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC----c--------------------ccCCC------C
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S--------------------IWKKY------S 50 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g----g--------------------~w~~~------~ 50 (301)
|+. ...+||+||||||+|+++|..|++.|++|+|+|+.+... + .|..- .
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 443 456899999999999999999999999999999976421 1 11100 0
Q ss_pred CCceEEeccc--ccccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCC
Q 022182 51 YDRLRLHLAK--QFCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLS 127 (301)
Q Consensus 51 ~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~ 127 (301)
+..+...... ....+..... ........++..+.+.+.+.+++.++.+ .++++|+++..++ +.++|++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~g-- 153 (392)
T PRK08773 80 YRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQL--HCPARVVALEQDA--DRVRLRLDDG-- 153 (392)
T ss_pred ccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeEEEEEecC--CeEEEEECCC--
Confidence 1111100000 0000100000 0011112456778888888888777655 8899999998755 5677777554
Q ss_pred CCceeEEEEeeCEEEEecCCCC
Q 022182 128 PGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 128 ~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+|.||.|+|.++
T Consensus 154 -----~~-~~a~~vV~AdG~~S 169 (392)
T PRK08773 154 -----RR-LEAALAIAADGAAS 169 (392)
T ss_pred -----CE-EEeCEEEEecCCCc
Confidence 46 89999999999765
No 106
>PRK10015 oxidoreductase; Provisional
Probab=99.28 E-value=9.6e-11 Score=105.59 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=81.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc------ccCCCC----CCceEEe---------------ccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IWKKYS----YDRLRLH---------------LAK 60 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg------~w~~~~----~~~~~~~---------------~~~ 60 (301)
..+||+||||||+|++||..|++.|++|+|+|+.+.+|. ...... ++.+... ...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 358999999999999999999999999999999876542 110000 1110000 000
Q ss_pred c--cccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 022182 61 Q--FCQLPHLP--FPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (301)
Q Consensus 61 ~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~ 136 (301)
. ...+.... .+........+..+.+++.+.+++.++.+ +.+++|+.+..++ +.+.....++ .+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i--~~~~~V~~i~~~~--~~v~~v~~~~-------~~-i 151 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQF--IPGVRVDALVREG--NKVTGVQAGD-------DI-L 151 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEE--ECCcEEEEEEEeC--CEEEEEEeCC-------eE-E
Confidence 0 00000000 00000112467788888988888888665 8889999887654 4443322221 56 8
Q ss_pred eeCEEEEecCCCC
Q 022182 137 SGRFLVVASGETT 149 (301)
Q Consensus 137 ~ad~vVlAtG~~~ 149 (301)
.++.||+|+|..+
T Consensus 152 ~A~~VI~AdG~~s 164 (429)
T PRK10015 152 EANVVILADGVNS 164 (429)
T ss_pred ECCEEEEccCcch
Confidence 9999999999644
No 107
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.27 E-value=2e-10 Score=106.78 Aligned_cols=138 Identities=19% Similarity=0.276 Sum_probs=86.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC------------------------CCCCceEEecc-
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK------------------------YSYDRLRLHLA- 59 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~------------------------~~~~~~~~~~~- 59 (301)
...+||+||||||+|+++|..|++.|++|+|+|+.+......+. ...........
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 34689999999999999999999999999999998754321110 00111111110
Q ss_pred -cccccCCC-CCCCCCCC--CCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 60 -KQFCQLPH-LPFPSSYP--MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 60 -~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
.....+.. ...+..++ ....+.++.+++.+.+.++ ++. ++++++|++++.++ +.++|++.+.++ +..+
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~--~~v~v~~~~~~G---~~~~ 160 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDD--DGVTVTLTDADG---QRET 160 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcC--CeEEEEEEcCCC---CEEE
Confidence 01111110 00001111 2245667777887777665 544 49999999998766 557777764221 1257
Q ss_pred EEeeCEEEEecCCCCC
Q 022182 135 YYSGRFLVVASGETTN 150 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~~ 150 (301)
+++|.||.|+|.+|.
T Consensus 161 -i~ad~vVgADG~~S~ 175 (538)
T PRK06183 161 -VRARYVVGCDGANSF 175 (538)
T ss_pred -EEEEEEEecCCCchh
Confidence 899999999997663
No 108
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.27 E-value=9.5e-11 Score=105.58 Aligned_cols=136 Identities=20% Similarity=0.304 Sum_probs=81.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC-----c----------------ccCCC-----CCCceEEecc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----S----------------IWKKY-----SYDRLRLHLA 59 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g-----g----------------~w~~~-----~~~~~~~~~~ 59 (301)
..+||+|||||++|+++|..|++.|++|+|+|+.+... . .|..- ....+.....
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 46899999999999999999999999999999987542 1 11100 0111111100
Q ss_pred c--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 60 K--QFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 60 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
. ....+.......... ....+..+.+.+.+.+... ++. +++++++++++.++ +.+.|++.++++ ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~- 167 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQ--DAATVTLEIEGK----QQT- 167 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecC--CeeEEEEccCCc----ceE-
Confidence 0 000111111111101 1123345666666666554 444 48899999997755 567777764321 146
Q ss_pred EeeCEEEEecCCCCC
Q 022182 136 YSGRFLVVASGETTN 150 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~ 150 (301)
+.+|.||.|+|.+|.
T Consensus 168 i~adlvIgADG~~S~ 182 (415)
T PRK07364 168 LQSKLVVAADGARSP 182 (415)
T ss_pred EeeeEEEEeCCCCch
Confidence 899999999997663
No 109
>PRK06184 hypothetical protein; Provisional
Probab=99.27 E-value=1.9e-10 Score=106.05 Aligned_cols=134 Identities=19% Similarity=0.285 Sum_probs=83.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc------cc-------------CC-----CCCCceEEecc-cc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------IW-------------KK-----YSYDRLRLHLA-KQ 61 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg------~w-------------~~-----~~~~~~~~~~~-~~ 61 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+.+.. .+ .. ..+........ ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999865421 11 00 00111111100 00
Q ss_pred cccCCCC----CC---CCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 62 FCQLPHL----PF---PSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 62 ~~~~~~~----~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
....... +. +.......++..+.+.+.+.+.+.++.+ ++++++++++.++ +.+++++....++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i--~~~~~v~~i~~~~--~~v~v~~~~~~~~----~~ 154 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRV--EFGCELVGFEQDA--DGVTARVAGPAGE----ET 154 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEE--EeCcEEEEEEEcC--CcEEEEEEeCCCe----EE
Confidence 0000000 00 0001122356667777888887777554 9999999998765 4566666432221 57
Q ss_pred EEeeCEEEEecCCCC
Q 022182 135 YYSGRFLVVASGETT 149 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~ 149 (301)
+.+|+||.|+|.+|
T Consensus 155 -i~a~~vVgADG~~S 168 (502)
T PRK06184 155 -VRARYLVGADGGRS 168 (502)
T ss_pred -EEeCEEEECCCCch
Confidence 89999999999766
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.27 E-value=1.1e-10 Score=104.30 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=83.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCc----eEEe--ccccc-----ccCCCCCCCCCCCC-
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDR----LRLH--LAKQF-----CQLPHLPFPSSYPM- 76 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~----~~~~--~~~~~-----~~~~~~~~~~~~~~- 76 (301)
||+|||||++|+++|..|++.|++|+|+|+.+..++.+....+.. +... ....+ ...+........+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 799999999999999999999999999999887765322211111 0000 00000 00010000001111
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
..++..+.+++.+.+.+.++.. ...+|+.+..+. .+.|.|++.++ .+ ++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~---~~~~v~~i~~~~-~~~~~v~~~~g-------~~-~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLW---LERKAIHAEADG-VALSTVYCAGG-------QR-IQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEE---EccEEEEEEecC-CceeEEEeCCC-------CE-EEeCEEEECCCCch
Confidence 2577889999988888777643 466788876652 35677877654 46 89999999999755
No 111
>PLN02463 lycopene beta cyclase
Probab=99.26 E-value=7.5e-11 Score=106.19 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=82.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC-----cccCCC------------CCCceEEecccccccCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-----SIWKKY------------SYDRLRLHLAKQFCQLPHL 68 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g-----g~w~~~------------~~~~~~~~~~~~~~~~~~~ 68 (301)
..+||+||||||+|+++|..|++.|++|+|+|+.+... +.|... .++.......... ..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~----~~ 102 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGK----KK 102 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCC----Cc
Confidence 35899999999999999999999999999999876321 233210 0111111000000 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
..... -...++.++.+++.+.+...++.. ...+|++++..+ +.+.|++.++ .+ +.++.||.|+|..
T Consensus 103 ~~~~~-y~~V~R~~L~~~Ll~~~~~~GV~~---~~~~V~~I~~~~--~~~~V~~~dG-------~~-i~A~lVI~AdG~~ 168 (447)
T PLN02463 103 DLDRP-YGRVNRKKLKSKMLERCIANGVQF---HQAKVKKVVHEE--SKSLVVCDDG-------VK-IQASLVLDATGFS 168 (447)
T ss_pred cccCc-ceeEEHHHHHHHHHHHHhhcCCEE---EeeEEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEECcCCC
Confidence 00000 123578889898888888777653 356888888754 5677887764 56 8999999999975
Q ss_pred C
Q 022182 149 T 149 (301)
Q Consensus 149 ~ 149 (301)
+
T Consensus 169 s 169 (447)
T PLN02463 169 R 169 (447)
T ss_pred c
Confidence 4
No 112
>PRK07190 hypothetical protein; Provisional
Probab=99.25 E-value=2e-10 Score=104.98 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=83.9
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC-----C-------------------CCCceEE
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK-----Y-------------------SYDRLRL 56 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~-----~-------------------~~~~~~~ 56 (301)
|++ ..+||+||||||+|+++|..|++.|++|+|+|+.+.....-+. + .+.....
T Consensus 1 m~~--~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 1 MST--QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCC--ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 553 3579999999999999999999999999999998754311000 0 0000000
Q ss_pred ecccccccCCC--C-CCCCC-C--CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCc
Q 022182 57 HLAKQFCQLPH--L-PFPSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (301)
Q Consensus 57 ~~~~~~~~~~~--~-~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 130 (301)
........... + ..+.. . ....+...+.+.+.+.+++.++.+ +++++|+++..++ +.+.+.+.++
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v--~~~~~v~~l~~~~--~~v~v~~~~g----- 149 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAV--KRNTSVVNIELNQ--AGCLTTLSNG----- 149 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEEcC--CeeEEEECCC-----
Confidence 00000000000 0 00000 0 112345667777777788777655 9999999998765 4566666543
Q ss_pred eeEEEEeeCEEEEecCCCC
Q 022182 131 EIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 131 ~~~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+++||.|+|.+|
T Consensus 150 --~~-v~a~~vVgADG~~S 165 (487)
T PRK07190 150 --ER-IQSRYVIGADGSRS 165 (487)
T ss_pred --cE-EEeCEEEECCCCCH
Confidence 56 89999999999765
No 113
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.24 E-value=3.8e-10 Score=105.17 Aligned_cols=138 Identities=18% Similarity=0.263 Sum_probs=84.9
Q ss_pred cCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC--------------CCC----------CceE-Eec
Q 022182 4 QAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK--------------YSY----------DRLR-LHL 58 (301)
Q Consensus 4 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~--------------~~~----------~~~~-~~~ 58 (301)
....+||+||||||+|+++|..|++.|++|+|+|+.+......+. ... .... ...
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence 345689999999999999999999999999999998754321100 000 0000 000
Q ss_pred ccccccCCCCCCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 59 AKQFCQLPHLPFP-SSYPMF--VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 59 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
......+...+.. ..++.+ .++..+.+++.+.+.+.+- ..+++++++++++.++ +.+++++.+.++. .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~--~~v~v~~~~~~g~----~~- 171 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD--DGVTLTVETPDGP----YT- 171 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC--CEEEEEEECCCCc----EE-
Confidence 0111111111100 011111 4566777888887776531 3448999999998765 5566665543221 46
Q ss_pred EeeCEEEEecCCCC
Q 022182 136 YSGRFLVVASGETT 149 (301)
Q Consensus 136 ~~ad~vVlAtG~~~ 149 (301)
+.+|.||.|+|.+|
T Consensus 172 i~ad~vVgADG~~S 185 (547)
T PRK08132 172 LEADWVIACDGARS 185 (547)
T ss_pred EEeCEEEECCCCCc
Confidence 89999999999766
No 114
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.23 E-value=9.8e-11 Score=92.12 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=84.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC-cccCCC-CCCceEEeccccc-ccCCCCCCCCCCCCC--CCHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA-SIWKKY-SYDRLRLHLAKQF-CQLPHLPFPSSYPMF--VSRA 81 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g-g~w~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~ 81 (301)
..||+||||||+||+||++|++.|.+|+|||++..+| |.|--. .++.+....+... .+--..++.+.-..+ .+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4699999999999999999999999999999988775 578754 3444444433221 111111222111111 3555
Q ss_pred HHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCC------cEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 82 QFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATN------MWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~------~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
++...+...+-+.+..+ +..+.|+.+-..++.. .|+.....+.. .+.-. ++++.||-|||+
T Consensus 110 e~~skl~~~a~~aGaki--~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh--vDPl~-i~a~~VvDaTGH 176 (262)
T COG1635 110 EFASKLAARALDAGAKI--FNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH--VDPLT-IRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHHhcCcee--eecceEEEEEEecCCceEEEEEecchhhhcccc--cCcce-eeEEEEEeCCCC
Confidence 66666666666667554 7777888776655321 13222211111 02246 899999999996
No 115
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.23 E-value=1.7e-10 Score=103.44 Aligned_cols=130 Identities=21% Similarity=0.318 Sum_probs=83.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCCc---------------------ccCC-----CCCCceEEecc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYAS---------------------IWKK-----YSYDRLRLHLA 59 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~gg---------------------~w~~-----~~~~~~~~~~~ 59 (301)
+||+||||||+|+++|..|++.| ++|+|+|+.+.... .|.. .....+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 81 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS 81 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence 79999999999999999999995 99999999764210 1100 00111111100
Q ss_pred cc--cccCCCCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCce
Q 022182 60 KQ--FCQLPHLPFP------SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (301)
Q Consensus 60 ~~--~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 131 (301)
.. ........+. ..+....++.++.+.+.+.+.+.++.+ +++++|++++.++ +.+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v--~~~~~v~~i~~~~--~~v~v~~~~g------ 151 (403)
T PRK07333 82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDL--REATSVTDFETRD--EGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEE--EcCCEEEEEEEcC--CEEEEEECCC------
Confidence 00 0000000110 011123577888999988888877655 8899999998755 5677777554
Q ss_pred eEEEEeeCEEEEecCCCC
Q 022182 132 IEEYYSGRFLVVASGETT 149 (301)
Q Consensus 132 ~~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+|.||.|+|.++
T Consensus 152 -~~-~~ad~vI~AdG~~S 167 (403)
T PRK07333 152 -SV-LEARLLVAADGARS 167 (403)
T ss_pred -CE-EEeCEEEEcCCCCh
Confidence 46 89999999999755
No 116
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.22 E-value=1.5e-10 Score=103.32 Aligned_cols=132 Identities=20% Similarity=0.347 Sum_probs=83.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc------------------ccCCC-----CCCceEEeccc-c
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS------------------IWKKY-----SYDRLRLHLAK-Q 61 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg------------------~w~~~-----~~~~~~~~~~~-~ 61 (301)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... .|..- .+..+...... .
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 358999999999999999999999999999999865421 12110 01111111110 0
Q ss_pred cccCCCCCC-----CCC-CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 62 FCQLPHLPF-----PSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 62 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
....+...+ ... +....++..+.+.+.+.+.+++... +++++|++++.++ +.|.|++.++ .+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 153 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT--RFGDEAESVRPRE--DEVTVTLADG-------TT- 153 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE--EECCeeEEEEEcC--CeEEEEECCC-------CE-
Confidence 000000000 001 1112466777888877777665333 7799999997755 6688877654 56
Q ss_pred EeeCEEEEecCCCC
Q 022182 136 YSGRFLVVASGETT 149 (301)
Q Consensus 136 ~~ad~vVlAtG~~~ 149 (301)
+.+|.||.|+|.+|
T Consensus 154 ~~a~~vI~AdG~~S 167 (388)
T PRK07494 154 LSARLVVGADGRNS 167 (388)
T ss_pred EEEeEEEEecCCCc
Confidence 89999999999765
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.22 E-value=8.9e-11 Score=105.41 Aligned_cols=132 Identities=16% Similarity=0.262 Sum_probs=81.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC-------------Cc--------------ccCCC------CCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------------AS--------------IWKKY------SYDR 53 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~-------------gg--------------~w~~~------~~~~ 53 (301)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..- .+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 479999999999999999999999999999987621 00 11100 0011
Q ss_pred eEEeccccc--ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCc
Q 022182 54 LRLHLAKQF--CQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (301)
Q Consensus 54 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 130 (301)
+........ ..+...... .......++..+.+.+.+.+.+.+++ +++++++++++.++ +.++|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~--~~v~v~~~~g----- 152 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSG--DDWLLTLADG----- 152 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 111000000 000000000 00011234566776676666666644 48899999998765 5688877654
Q ss_pred eeEEEEeeCEEEEecCCCCC
Q 022182 131 EIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 131 ~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+ +.+|.||.|+|.+|.
T Consensus 153 --~~-~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 153 --RQ-LRAPLVVAADGANSA 169 (405)
T ss_pred --CE-EEeCEEEEecCCCch
Confidence 56 899999999997663
No 118
>PRK06126 hypothetical protein; Provisional
Probab=99.22 E-value=5.4e-10 Score=104.11 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=84.5
Q ss_pred CcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc-------------------ccCC---CCCC------ce
Q 022182 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-------------------IWKK---YSYD------RL 54 (301)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg-------------------~w~~---~~~~------~~ 54 (301)
.....+||+||||||+|+++|..|+++|++|+|+|+.+.... .|.. ...+ ..
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 345578999999999999999999999999999998864321 0000 0000 00
Q ss_pred EEe--cccccccCCC--C----CC--------CC-CCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCC
Q 022182 55 RLH--LAKQFCQLPH--L----PF--------PS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATN 116 (301)
Q Consensus 55 ~~~--~~~~~~~~~~--~----~~--------~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~ 116 (301)
... .......+.. . .. .. ......++..+.+.+.+.+++. ++.+ +++++|++++.++ +
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i--~~~~~v~~i~~~~--~ 158 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTL--RYGHRLTDFEQDA--D 158 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceE--EeccEEEEEEECC--C
Confidence 000 0000000000 0 00 00 0012245667777888777765 4444 9999999998765 4
Q ss_pred cEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 117 MWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 117 ~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.+++++.+..++ +..+ +.+|+||.|+|.+|
T Consensus 159 ~v~v~~~~~~~g--~~~~-i~ad~vVgADG~~S 188 (545)
T PRK06126 159 GVTATVEDLDGG--ESLT-IRADYLVGCDGARS 188 (545)
T ss_pred eEEEEEEECCCC--cEEE-EEEEEEEecCCcch
Confidence 566666542221 2246 89999999999766
No 119
>PRK07045 putative monooxygenase; Reviewed
Probab=99.22 E-value=2.7e-10 Score=101.73 Aligned_cols=134 Identities=22% Similarity=0.286 Sum_probs=82.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC----Cc--ccCCC-------------------CCCceEEeccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS--IWKKY-------------------SYDRLRLHLAK 60 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~----gg--~w~~~-------------------~~~~~~~~~~~ 60 (301)
..+||+||||||+|+++|..|++.|++|+|+|+.+.. ++ .+... ....+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 4579999999999999999999999999999988754 11 11100 00111111000
Q ss_pred c-cccCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe
Q 022182 61 Q-FCQLPHLPF-PSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (301)
Q Consensus 61 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ 137 (301)
. ...++.... +..+....++.++.+.+.+.+... ++ .++++++++.+..++++..+.|++.++ ++ +.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g-------~~-~~ 153 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDADGTVTSVTLSDG-------ER-VA 153 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECCCCcEEEEEeCCC-------CE-EE
Confidence 0 000110000 011111245677777776665443 44 449999999998866433456766554 56 89
Q ss_pred eCEEEEecCCCC
Q 022182 138 GRFLVVASGETT 149 (301)
Q Consensus 138 ad~vVlAtG~~~ 149 (301)
+|.||.|+|.+|
T Consensus 154 ~~~vIgADG~~S 165 (388)
T PRK07045 154 PTVLVGADGARS 165 (388)
T ss_pred CCEEEECCCCCh
Confidence 999999999766
No 120
>PRK06185 hypothetical protein; Provisional
Probab=99.20 E-value=3.3e-10 Score=101.78 Aligned_cols=137 Identities=18% Similarity=0.352 Sum_probs=82.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC-----Cc--------------ccCCC---C---CCceEEecc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-----AS--------------IWKKY---S---YDRLRLHLA 59 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~-----gg--------------~w~~~---~---~~~~~~~~~ 59 (301)
...+||+|||||++|+++|..|++.|++|+|+|+.+.. +. .|..- . +..+.....
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 35689999999999999999999999999999987542 11 11110 0 011111111
Q ss_pred cc-c--ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 60 KQ-F--CQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 60 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
.. . ..+...+.+..+..+.++..+.+++.+.+.+. ++. ++++++++++..++ +....|.+...++ ..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~-~~v~~v~~~~~~g----~~~- 155 (407)
T PRK06185 84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEG-GRVTGVRARTPDG----PGE- 155 (407)
T ss_pred CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeC-CEEEEEEEEcCCC----cEE-
Confidence 10 0 11111111111222356778888887777664 544 48899999997754 2222344432211 146
Q ss_pred EeeCEEEEecCCCC
Q 022182 136 YSGRFLVVASGETT 149 (301)
Q Consensus 136 ~~ad~vVlAtG~~~ 149 (301)
+.++.||.|+|.+|
T Consensus 156 i~a~~vI~AdG~~S 169 (407)
T PRK06185 156 IRADLVVGADGRHS 169 (407)
T ss_pred EEeCEEEECCCCch
Confidence 89999999999766
No 121
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.20 E-value=2.8e-10 Score=101.50 Aligned_cols=132 Identities=21% Similarity=0.303 Sum_probs=85.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC-CC---C----------------cccC---C---CCCCceEEeccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CY---A----------------SIWK---K---YSYDRLRLHLAK 60 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~-~~---g----------------g~w~---~---~~~~~~~~~~~~ 60 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+ .+ | |.+. . ..+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999982 21 1 0100 0 001111111111
Q ss_pred c-cccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEEEe
Q 022182 61 Q-FCQLPHLPFP-SSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEYYS 137 (301)
Q Consensus 61 ~-~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~~~~~~ 137 (301)
. ...+...... .......++.++...+.+.+.+.+. +.++++++|+.++.++ +..++++. ++ ++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-v~~~~~~~v~~~~~~~--~~v~v~l~~dG-------~~-~~ 150 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPN-VTLRFGAEVEAVEQDG--DGVTVTLSFDG-------ET-LD 150 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCC-cEEEcCceEEEEEEcC--CceEEEEcCCC-------cE-Ee
Confidence 0 1111111111 1112235778899999888887752 3348999999999876 55667777 44 57 99
Q ss_pred eCEEEEecCCCC
Q 022182 138 GRFLVVASGETT 149 (301)
Q Consensus 138 ad~vVlAtG~~~ 149 (301)
||.||.|.|.+|
T Consensus 151 a~llVgADG~~S 162 (387)
T COG0654 151 ADLLVGADGANS 162 (387)
T ss_pred cCEEEECCCCch
Confidence 999999999766
No 122
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.19 E-value=2.5e-10 Score=102.03 Aligned_cols=132 Identities=19% Similarity=0.307 Sum_probs=81.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC----Cc---------------------ccCCC------CCCce
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----AS---------------------IWKKY------SYDRL 54 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~----gg---------------------~w~~~------~~~~~ 54 (301)
+.+||+|||||++|+++|..|++.|++|+|+|+.+.. ++ .|..- .+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4589999999999999999999999999999987521 11 11110 00011
Q ss_pred EEe-cccccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCce
Q 022182 55 RLH-LAKQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGRE 131 (301)
Q Consensus 55 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~ 131 (301)
... .......+....... ......++..+.+.+.+.+... ++.+ +++++++++..++ +.+.|.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i--~~~~~v~~i~~~~--~~~~v~~~~g------ 153 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTL--RCPASLQALQRDD--DGWELTLADG------ 153 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEE--EcCCeeEEEEEcC--CeEEEEECCC------
Confidence 100 000000000000000 0011245677777777766665 5444 7899999987655 5677877654
Q ss_pred eEEEEeeCEEEEecCCCC
Q 022182 132 IEEYYSGRFLVVASGETT 149 (301)
Q Consensus 132 ~~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+|.||.|+|.+|
T Consensus 154 -~~-~~a~~vI~AdG~~S 169 (391)
T PRK08020 154 -EE-IQAKLVIGADGANS 169 (391)
T ss_pred -CE-EEeCEEEEeCCCCc
Confidence 46 89999999999766
No 123
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.19 E-value=2.9e-10 Score=101.33 Aligned_cols=129 Identities=15% Similarity=0.197 Sum_probs=81.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc--------ccCC-----------CCCCc-----------eEEec
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--------IWKK-----------YSYDR-----------LRLHL 58 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg--------~w~~-----------~~~~~-----------~~~~~ 58 (301)
||+|||||++|+++|..|++.|++|+|+|+.+..+. ...- ..++. +....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999875320 0000 00000 00000
Q ss_pred ccc--cccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhC-CCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 59 AKQ--FCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 59 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
... ...++...... .....+++.++.+.+.+.+.+.+ +.+ +++++|++++.++ +.+.+++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~ 149 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTL--LCPARVVELPRHS--DHVELTLDDG-------QQ 149 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--ecCCeEEEEEecC--CeeEEEECCC-------CE
Confidence 000 00000000000 01112467788888888887765 444 8999999998755 5677777654 56
Q ss_pred EEeeCEEEEecCCCC
Q 022182 135 YYSGRFLVVASGETT 149 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~ 149 (301)
+.+|.||.|+|.++
T Consensus 150 -~~~~~vi~adG~~S 163 (385)
T TIGR01988 150 -LRARLLVGADGANS 163 (385)
T ss_pred -EEeeEEEEeCCCCC
Confidence 89999999999765
No 124
>PRK06753 hypothetical protein; Provisional
Probab=99.19 E-value=4.5e-10 Score=99.73 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=80.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-------------------cCC-----CCCCceEEecccccc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-------------------WKK-----YSYDRLRLHLAKQFC 63 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-------------------w~~-----~~~~~~~~~~~~~~~ 63 (301)
++|+|||||++|+++|..|++.|++|+|+|+++..... |.. ..........+...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~- 79 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT- 79 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-
Confidence 38999999999999999999999999999998754311 100 00111111111000
Q ss_pred cCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 64 QLPHLPFPSS-YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 64 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
.+...++... .....++..+.+.+.+.+.. ..++++++|++++.++ +.++|++.++ .+ +.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~~~vi 145 (373)
T PRK06753 80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENET--DKVTIHFADG-------ES-EAFDLCI 145 (373)
T ss_pred EEeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEecC--CcEEEEECCC-------CE-EecCEEE
Confidence 0001111111 11235677777777666542 2458999999998654 6678877654 56 8999999
Q ss_pred EecCCCC
Q 022182 143 VASGETT 149 (301)
Q Consensus 143 lAtG~~~ 149 (301)
.|.|.+|
T Consensus 146 gadG~~S 152 (373)
T PRK06753 146 GADGIHS 152 (373)
T ss_pred ECCCcch
Confidence 9999766
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.19 E-value=3.5e-10 Score=100.96 Aligned_cols=130 Identities=14% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC---cccCCCC----------------CCc-----------eEE
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYS----------------YDR-----------LRL 56 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g---g~w~~~~----------------~~~-----------~~~ 56 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+... ..|..+. .+. +..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 5799999999999999999999999999999987642 1222110 000 000
Q ss_pred ecccccccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhC-CCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 022182 57 HLAKQFCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFN-IGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (301)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 132 (301)
... ....+.........+ ...++..+.+.+.+.+++.+ +.. + +++++++...+ +.+.|++.++
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~--~-~~~v~~i~~~~--~~~~v~~~~g------- 151 (388)
T PRK07608 85 FGD-AHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTW--F-PARAQGLEVDP--DAATLTLADG------- 151 (388)
T ss_pred EEC-CCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEE--E-cceeEEEEecC--CeEEEEECCC-------
Confidence 000 000000000000111 11356778888888887765 443 5 88899887654 5677777654
Q ss_pred EEEEeeCEEEEecCCCCC
Q 022182 133 EEYYSGRFLVVASGETTN 150 (301)
Q Consensus 133 ~~~~~ad~vVlAtG~~~~ 150 (301)
.+ +.+|.||.|+|.+|.
T Consensus 152 ~~-~~a~~vI~adG~~S~ 168 (388)
T PRK07608 152 QV-LRADLVVGADGAHSW 168 (388)
T ss_pred CE-EEeeEEEEeCCCCch
Confidence 46 899999999997653
No 126
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.18 E-value=1.4e-10 Score=94.04 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccc-------------------------
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFC------------------------- 63 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~------------------------- 63 (301)
+|+|||+|++|++||..|+..|.+|+||||...+||....++.+.-..+....+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6999999999999999999999999999999999986554433332222111111
Q ss_pred ---cCCCC---CCCCC--CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 64 ---QLPHL---PFPSS--YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 64 ---~~~~~---~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
.+... +.... |-..+.-..+.+|+. . ++++ .++++|+.+.+.+ +.|+++++++. ..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LA---t--dL~V--~~~~rVt~v~~~~--~~W~l~~~~g~------~~- 146 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLA---T--DLTV--VLETRVTEVARTD--NDWTLHTDDGT------RH- 146 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHh---c--cchh--hhhhhhhhheecC--CeeEEEecCCC------cc-
Confidence 11110 00000 111122222222221 1 3334 8999999998864 88999997653 45
Q ss_pred EeeCEEEEecCC
Q 022182 136 YSGRFLVVASGE 147 (301)
Q Consensus 136 ~~ad~vVlAtG~ 147 (301)
..+|.||+|.=.
T Consensus 147 ~~~d~vvla~PA 158 (331)
T COG3380 147 TQFDDVVLAIPA 158 (331)
T ss_pred cccceEEEecCC
Confidence 789999999763
No 127
>PRK07588 hypothetical protein; Provisional
Probab=99.17 E-value=3.7e-10 Score=100.96 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=80.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC--c-c---cCCC------------------CCCceEEeccc--c
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S-I---WKKY------------------SYDRLRLHLAK--Q 61 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g--g-~---w~~~------------------~~~~~~~~~~~--~ 61 (301)
+||+|||||++|+++|..|++.|++|+|+|+.+... | . |... ....+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 489999999999999999999999999999887542 1 1 1110 01111111100 0
Q ss_pred cccCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEee
Q 022182 62 FCQLPHLPFPSSYP---MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSG 138 (301)
Q Consensus 62 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~a 138 (301)
...++...+..... ...++.++.+.+.+.+.. + ..++++++|++++.++ +.++|++.++ ++ +.+
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~--v~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~~ 147 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q--VETIFDDSIATIDEHR--DGVRVTFERG-------TP-RDF 147 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C--eEEEeCCEEeEEEECC--CeEEEEECCC-------CE-EEe
Confidence 11111111111111 124567777766554332 3 4459999999998765 5678877765 56 789
Q ss_pred CEEEEecCCCCCC
Q 022182 139 RFLVVASGETTNP 151 (301)
Q Consensus 139 d~vVlAtG~~~~p 151 (301)
|.||.|.|.+|.-
T Consensus 148 d~vIgADG~~S~v 160 (391)
T PRK07588 148 DLVIGADGLHSHV 160 (391)
T ss_pred CEEEECCCCCccc
Confidence 9999999976643
No 128
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.16 E-value=4.6e-10 Score=101.51 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=82.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC----CcccCCCC--------------CCceEEeccccc-ccCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----ASIWKKYS--------------YDRLRLHLAKQF-CQLP 66 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~----gg~w~~~~--------------~~~~~~~~~~~~-~~~~ 66 (301)
..+||+||||||+|+++|..|++.|++|+|+|+.... ||...... ...+.+..+... ..+.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 4689999999999999999999999999999987531 22100000 001111111110 0011
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCC-CCcEEEEEeecC----CCCceeEEEEeeCEE
Q 022182 67 HLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLL----SPGREIEEYYSGRFL 141 (301)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~~~----~~~~~~~~~~~ad~v 141 (301)
....+..+-...++..+.+++.+.+.+.|.+. +.. .+++++.... .+.+.|++.+.. ++ +..+ +.+|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~--~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-v~a~~V 191 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATL--ING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAG--TPKT-LEVDAV 191 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEE--Eec-eEEEEEeccCCCCcEEEEEEeccccccCC--CccE-EEeCEE
Confidence 00000011112688999999999998888765 444 5777764322 345667664320 00 1156 899999
Q ss_pred EEecCCCC
Q 022182 142 VVASGETT 149 (301)
Q Consensus 142 VlAtG~~~ 149 (301)
|.|+|.+|
T Consensus 192 IgADG~~S 199 (450)
T PLN00093 192 IGADGANS 199 (450)
T ss_pred EEcCCcch
Confidence 99999755
No 129
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.16 E-value=2.9e-10 Score=101.74 Aligned_cols=134 Identities=23% Similarity=0.255 Sum_probs=82.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc------cCC--------CC----------CCceEEecc---
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI------WKK--------YS----------YDRLRLHLA--- 59 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~------w~~--------~~----------~~~~~~~~~--- 59 (301)
..||+|||||++|+++|..|++.|++|+|+|+.+..+.. +.. .. .........
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999998764310 100 00 001111000
Q ss_pred cccccCCCC-CCCCCC--C-CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 60 KQFCQLPHL-PFPSSY--P-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 60 ~~~~~~~~~-~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
.....++.. .+...+ + ....+.++.+.+.+.+.+.+ .+.+++++++++++.++ +.+.+++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~-~v~~~~~~~v~~i~~~~--~~v~v~~~~g-------~~- 152 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHP-LVEFRTSTHVVGIEQDG--DGVTVFDQQG-------NR- 152 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcC-CcEEEeCCEEEEEecCC--CceEEEEcCC-------CE-
Confidence 000000000 000000 1 12467778787777776654 13348899999997654 5577776554 56
Q ss_pred EeeCEEEEecCCCCCC
Q 022182 136 YSGRFLVVASGETTNP 151 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~p 151 (301)
+.+|.||.|+|.+|..
T Consensus 153 ~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 153 WTGDALIGCDGVKSVV 168 (396)
T ss_pred EecCEEEECCCcChHH
Confidence 8999999999976643
No 130
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.16 E-value=5.9e-10 Score=98.82 Aligned_cols=121 Identities=24% Similarity=0.321 Sum_probs=81.0
Q ss_pred cEEEECCChHHHHHHHHH--hhCCCCeEEEecCCCC--Cc--ccCCC-------------CCCceEEecccccccCCCCC
Q 022182 9 EVIMVGAGTSGLATAACL--SLQSIPYVILERENCY--AS--IWKKY-------------SYDRLRLHLAKQFCQLPHLP 69 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l--~~~g~~v~vie~~~~~--gg--~w~~~-------------~~~~~~~~~~~~~~~~~~~~ 69 (301)
||+|||||+||+++|.+| .+.|.+|+|+|++... .. +|... .|+...+..+..-...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~---- 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL---- 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEE----
Confidence 899999999999999999 7789999999988765 21 23211 1111111111110000
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 70 FPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 70 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
. .++ ...++..+.+++.+.+...+ . ++++++|++|+... ..+.|.+.++ .+ ++++.||-|+|..
T Consensus 77 -~-~~~Y~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 77 -I-DYPYCMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETG--DGVLVVLADG-------RT-IRARVVVDARGPS 141 (374)
T ss_pred -c-ccceEEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecC--ceEEEEECCC-------CE-EEeeEEEECCCcc
Confidence 0 011 13578888888888777433 2 37889999998766 4677777765 57 9999999999953
No 131
>PRK11445 putative oxidoreductase; Provisional
Probab=99.16 E-value=8.7e-10 Score=97.03 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=79.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC---------CcccCCC---------CC-CceEEeccc----cccc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---------ASIWKKY---------SY-DRLRLHLAK----QFCQ 64 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~---------gg~w~~~---------~~-~~~~~~~~~----~~~~ 64 (301)
+||+||||||+|+++|..|++. ++|+++|+.+.. |+....+ .. +......+. ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~ 80 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID 80 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence 7999999999999999999999 999999988743 2211000 00 000000000 0000
Q ss_pred CCC-CCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 65 LPH-LPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 65 ~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
+.. ........ ...++.++.+++.+.+ ..+++ +++++.++.+..++ +.|.|.+...+ ...+ +.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~--~~~~v~~~~~g----~~~~-i~a~~vV 150 (351)
T PRK11445 81 LANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWRED--DGYHVIFRADG----WEQH-ITARYLV 150 (351)
T ss_pred ccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcC--CEEEEEEecCC----cEEE-EEeCEEE
Confidence 000 00000001 1267888888777643 34544 48899999998755 56888763221 1136 8999999
Q ss_pred EecCCCCC
Q 022182 143 VASGETTN 150 (301)
Q Consensus 143 lAtG~~~~ 150 (301)
.|+|..|.
T Consensus 151 ~AdG~~S~ 158 (351)
T PRK11445 151 GADGANSM 158 (351)
T ss_pred ECCCCCcH
Confidence 99997653
No 132
>PRK09126 hypothetical protein; Provisional
Probab=99.15 E-value=6.8e-10 Score=99.27 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC--------Cc---ccCC--------CCCCc-----------eEE
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY--------AS---IWKK--------YSYDR-----------LRL 56 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~--------gg---~w~~--------~~~~~-----------~~~ 56 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. |. .+.. ..++. ...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 479999999999999999999999999999998642 21 0100 00000 000
Q ss_pred eccccc--ccCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-HhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 022182 57 HLAKQF--CQLPHLPF-PSSYPMFVSRAQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (301)
Q Consensus 57 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 132 (301)
...... ..++.... ........++..+.+.+.+.+. ..++. ++++++|++++.++ +.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~--i~~~~~v~~~~~~~--~~~~v~~~~g------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIE--LLTGTRVTAVRTDD--DGAQVTLANG------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcE--EEcCCeEEEEEEcC--CeEEEEEcCC-------
Confidence 000000 00000000 0001111345556655544443 33544 49999999997754 5577777654
Q ss_pred EEEEeeCEEEEecCCCC
Q 022182 133 EEYYSGRFLVVASGETT 149 (301)
Q Consensus 133 ~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+|.||.|+|.++
T Consensus 152 ~~-~~a~~vI~AdG~~S 167 (392)
T PRK09126 152 RR-LTARLLVAADSRFS 167 (392)
T ss_pred CE-EEeCEEEEeCCCCc
Confidence 56 89999999999755
No 133
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.14 E-value=1.3e-09 Score=97.47 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=80.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC----cccCCC--------------CCCceEEeccccc-ccCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SIWKKY--------------SYDRLRLHLAKQF-CQLPHL 68 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g----g~w~~~--------------~~~~~~~~~~~~~-~~~~~~ 68 (301)
+||+||||||+|+++|..|++.|++|+|+|+....+ +..... .........+... ..+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 589999999999999999999999999999876432 111100 0111111111110 000100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcC-CCCcEEEEEeecC----CCCceeEEEEeeCEEEE
Q 022182 69 PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE-ATNMWNVKASNLL----SPGREIEEYYSGRFLVV 143 (301)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~-~~~~~~V~~~~~~----~~~~~~~~~~~ad~vVl 143 (301)
.....+....++..+.+++.+.+.+.+.++ +.+ .+..+.... ..+.+.|+..... .+ +..+ +.++.||.
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v--~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g--~~~~-i~a~~VIg 154 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATL--ING-LVTKLSLPADADDPYTLHYISSDSGGPSG--TRCT-LEVDAVIG 154 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEE--Ecc-eEEEEEeccCCCceEEEEEeeccccccCC--CccE-EEeCEEEE
Confidence 000111123688899999999999888765 555 466664322 2355666653211 00 1146 89999999
Q ss_pred ecCCCC
Q 022182 144 ASGETT 149 (301)
Q Consensus 144 AtG~~~ 149 (301)
|+|.+|
T Consensus 155 ADG~~S 160 (398)
T TIGR02028 155 ADGANS 160 (398)
T ss_pred CCCcch
Confidence 999655
No 134
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.13 E-value=4.8e-10 Score=99.89 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=80.6
Q ss_pred cEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCCCc-----------------------ccCCC---C--CCceEEecc
Q 022182 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYAS-----------------------IWKKY---S--YDRLRLHLA 59 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~gg-----------------------~w~~~---~--~~~~~~~~~ 59 (301)
||+||||||+|+++|..|++.| ++|+|+|+.+...- .|... . .........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999764311 00000 0 000000000
Q ss_pred ccc--ccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 60 KQF--CQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 60 ~~~--~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
... ..+....+..... ...++.++.+.+.+.+... ++.. +++++|+++..++ +.++|++.++ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~g-------~~- 148 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQL--YCPARYKEIIRNQ--DYVRVTLDNG-------QQ- 148 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-
Confidence 000 0000000000001 1146678888888877764 6554 8899999998755 5677877554 46
Q ss_pred EeeCEEEEecCCCC
Q 022182 136 YSGRFLVVASGETT 149 (301)
Q Consensus 136 ~~ad~vVlAtG~~~ 149 (301)
+.+|.||.|+|.+|
T Consensus 149 ~~ad~vV~AdG~~S 162 (382)
T TIGR01984 149 LRAKLLIAADGANS 162 (382)
T ss_pred EEeeEEEEecCCCh
Confidence 89999999999765
No 135
>PRK07538 hypothetical protein; Provisional
Probab=99.13 E-value=6.6e-09 Score=93.56 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=81.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC----cc--cCC--------CC----------CCceEEeccc--c
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----SI--WKK--------YS----------YDRLRLHLAK--Q 61 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g----g~--w~~--------~~----------~~~~~~~~~~--~ 61 (301)
+||+|||||++|+++|..|++.|++|+|+|+.+.+. |. +.. .. .......... .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 489999999999999999999999999999987532 11 000 00 0111111000 0
Q ss_pred cccCCCCCCC--CCCCC-CCCHHHHHHHHHHHHHH-hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe
Q 022182 62 FCQLPHLPFP--SSYPM-FVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (301)
Q Consensus 62 ~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ 137 (301)
....+ .... ..++. .+++.++.+.+.+.+.+ .+. ..++++++|++++.++ +...+.+.++..+ +..+ +.
T Consensus 81 ~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~--~~~~~~~~~~~~g--~~~~-~~ 153 (413)
T PRK07538 81 IWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA--DVTVVFLGDRAGG--DLVS-VR 153 (413)
T ss_pred Eeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC--CceEEEEeccCCC--ccce-EE
Confidence 00000 0000 01111 25778888887776654 453 2358999999998765 3345555443211 1246 89
Q ss_pred eCEEEEecCCCCC
Q 022182 138 GRFLVVASGETTN 150 (301)
Q Consensus 138 ad~vVlAtG~~~~ 150 (301)
+|.||.|.|.+|.
T Consensus 154 adlvIgADG~~S~ 166 (413)
T PRK07538 154 GDVLIGADGIHSA 166 (413)
T ss_pred eeEEEECCCCCHH
Confidence 9999999998763
No 136
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.12 E-value=8e-10 Score=100.14 Aligned_cols=135 Identities=17% Similarity=0.284 Sum_probs=81.5
Q ss_pred CcEEEECCChHHHHHHHHHhh----CCCCeEEEecCC--CCC--------c---------------------ccCCC---
Q 022182 8 VEVIMVGAGTSGLATAACLSL----QSIPYVILEREN--CYA--------S---------------------IWKKY--- 49 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~----~g~~v~vie~~~--~~g--------g---------------------~w~~~--- 49 (301)
+||+||||||+|+++|..|++ .|++|+|+|+++ ..- + .|..-
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 799999999943 211 1 11100
Q ss_pred ---CCCceEEecccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC-CceeeeCcEEEEEEEc-----CCCCcE
Q 022182 50 ---SYDRLRLHLAKQ--FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNI-GPSIRYQRSVESASYD-----EATNMW 118 (301)
Q Consensus 50 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~i~~~~~V~~i~~~-----~~~~~~ 118 (301)
.+..+....... ...+.............++..+.+.+.+.+.+.+- .+.++++++|++++.+ ++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 000111100000 00111100000011124677788888777776641 2445899999999753 223556
Q ss_pred EEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 119 NVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 119 ~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
+|++.++ ++ +++|.||.|.|.+|.
T Consensus 161 ~v~~~~g-------~~-i~a~llVgADG~~S~ 184 (437)
T TIGR01989 161 HITLSDG-------QV-LYTKLLIGADGSNSN 184 (437)
T ss_pred EEEEcCC-------CE-EEeeEEEEecCCCCh
Confidence 7777654 57 899999999997763
No 137
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.12 E-value=9.5e-10 Score=97.68 Aligned_cols=130 Identities=15% Similarity=0.254 Sum_probs=82.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC-------C----------------cccCC-----CCCCceEEecc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY-------A----------------SIWKK-----YSYDRLRLHLA 59 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~-------g----------------g~w~~-----~~~~~~~~~~~ 59 (301)
+||+||||||+|+++|..|++.|++|+|+|+.+.. + |.|.. ..+..+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 59999999999999999999999999999986321 1 12211 01111111111
Q ss_pred c--ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe
Q 022182 60 K--QFCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (301)
Q Consensus 60 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ 137 (301)
. ....+... ....+....++.++.+.+.+.+...+. ..++++++++++..++ +.+.|.+.+ .+ +.
T Consensus 82 ~g~~~~~~~~~-~~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~--~~v~v~~~~--------~~-~~ 148 (374)
T PRK06617 82 KASEILDLRND-ADAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN--DYSIIKFDD--------KQ-IK 148 (374)
T ss_pred CCceEEEecCC-CCCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC--CeEEEEEcC--------CE-Ee
Confidence 0 01111110 000011224788888888888877652 3347899999987755 557777743 35 89
Q ss_pred eCEEEEecCCCCC
Q 022182 138 GRFLVVASGETTN 150 (301)
Q Consensus 138 ad~vVlAtG~~~~ 150 (301)
+|.||.|.|.+|.
T Consensus 149 adlvIgADG~~S~ 161 (374)
T PRK06617 149 CNLLIICDGANSK 161 (374)
T ss_pred eCEEEEeCCCCch
Confidence 9999999998764
No 138
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.12 E-value=1.7e-09 Score=96.75 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=78.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC---C----c--------------ccCC-----CCCCceEEeccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY---A----S--------------IWKK-----YSYDRLRLHLAK 60 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~---g----g--------------~w~~-----~~~~~~~~~~~~ 60 (301)
.+||+||||||+|+++|..|++.|++|+|+|+.+.. + + .|.. .....+.+....
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 469999999999999999999999999999998741 1 1 1100 001111111111
Q ss_pred ccccCCCCCCCCCC--C--CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEE
Q 022182 61 QFCQLPHLPFPSSY--P--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEY 135 (301)
Q Consensus 61 ~~~~~~~~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~~~~ 135 (301)
.... ++++... . ...++.++.+.+.+.+...++.. ++++++++++..+ .+...|++. ++ +..+
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v--~~~~~v~~i~~~~-~~~~~V~~~~~G-----~~~~- 149 (392)
T PRK08243 82 RRHR---IDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPI--RFEASDVALHDFD-SDRPYVTYEKDG-----EEHR- 149 (392)
T ss_pred EEEE---eccccccCCceEEEeCcHHHHHHHHHHHHhCCCeE--EEeeeEEEEEecC-CCceEEEEEcCC-----eEEE-
Confidence 1111 1111110 0 11234556666655566666555 8999999887522 234455553 32 2246
Q ss_pred EeeCEEEEecCCCCC
Q 022182 136 YSGRFLVVASGETTN 150 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~ 150 (301)
+++|.||.|.|.+|.
T Consensus 150 i~ad~vVgADG~~S~ 164 (392)
T PRK08243 150 LDCDFIAGCDGFHGV 164 (392)
T ss_pred EEeCEEEECCCCCCc
Confidence 899999999998764
No 139
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.11 E-value=8.8e-10 Score=98.52 Aligned_cols=126 Identities=21% Similarity=0.328 Sum_probs=81.9
Q ss_pred EEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEec-----ccc---------------cccCC----
Q 022182 11 IMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-----AKQ---------------FCQLP---- 66 (301)
Q Consensus 11 vIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~-----~~~---------------~~~~~---- 66 (301)
+|||||++|+++|..|++.|.+|+|+|+++.+|+.+.... +-+++. ... +..+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG--~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISG--GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccC--CceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 6999999999999999999999999999998876432110 000000 000 00000
Q ss_pred -------CCCCC--CCCCCCC---CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 67 -------HLPFP--SSYPMFV---SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 67 -------~~~~~--~~~~~~~---~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
..++. +....|| ...++.+.+.+.+++.++.+ ++++.|+++..++ +.|.+++.. .+
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i--~~~~~V~~i~~~~--~~~~v~~~~--------~~ 146 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEI--LTNSKVKSIKKDD--NGFGVETSG--------GE 146 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEE--EeCCEEEEEEecC--CeEEEEECC--------cE
Confidence 00000 0001122 45678888888888888665 8999999997654 567776632 46
Q ss_pred EEeeCEEEEecCCCCCC
Q 022182 135 YYSGRFLVVASGETTNP 151 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~~p 151 (301)
+.+|.||+|+|..+.|
T Consensus 147 -i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 147 -YEADKVILATGGLSYP 162 (400)
T ss_pred -EEcCEEEECCCCcccC
Confidence 8999999999976644
No 140
>PRK07236 hypothetical protein; Provisional
Probab=99.11 E-value=2.2e-09 Score=95.83 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=76.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC----C-cc-cCCC---------CCCceEEeccc---ccccC--
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY----A-SI-WKKY---------SYDRLRLHLAK---QFCQL-- 65 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~----g-g~-w~~~---------~~~~~~~~~~~---~~~~~-- 65 (301)
..++|+|||||++|+++|..|++.|++|+|+|+.+.. | |. ...+ ..+......+. .+...
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3579999999999999999999999999999997632 1 10 0000 00000000000 00000
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 66 ---PHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 66 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
...+.+ .....+..+.+.+.+ .+. ...++++++|++++.++ +.++|++.++ .+ +.+|.||
T Consensus 85 ~~~~~~~~~---~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-~~ad~vI 147 (386)
T PRK07236 85 RVVQRRPMP---QTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDG--DRVTARFADG-------RR-ETADLLV 147 (386)
T ss_pred CEeeccCCC---ccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecC--CeEEEEECCC-------CE-EEeCEEE
Confidence 000000 011234444444432 222 23458999999998754 5677887765 56 8999999
Q ss_pred EecCCCCCC
Q 022182 143 VASGETTNP 151 (301)
Q Consensus 143 lAtG~~~~p 151 (301)
.|.|.+|.-
T Consensus 148 gADG~~S~v 156 (386)
T PRK07236 148 GADGGRSTV 156 (386)
T ss_pred ECCCCCchH
Confidence 999987643
No 141
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.11 E-value=4.6e-10 Score=98.69 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.+...+..++.+.+++.|+.+ +.+++|++++.++ +.|+ |.+.+ .. +.+|+||+|+|.++
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~i--~~~~~V~~i~~~~--~~v~gv~~~~--------g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVEI--RTGTEVTSIDVDG--GRVTGVRTSD--------GE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-EE--EESEEEEEEEEET--TEEEEEEETT--------EE-EEECEEEE--GGGH
T ss_pred ccccchhhhhHHHHHHhhhhc--cccccccchhhcc--cccccccccc--------cc-cccceeEecccccc
Confidence 356888899999999988666 9999999999876 6777 88776 46 89999999999754
No 142
>PRK06996 hypothetical protein; Provisional
Probab=99.10 E-value=1.4e-09 Score=97.33 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=83.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC----CCeEEEecCCCCC---------------------cccCCCCCC--ceEEe
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQS----IPYVILERENCYA---------------------SIWKKYSYD--RLRLH 57 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g----~~v~vie~~~~~g---------------------g~w~~~~~~--~~~~~ 57 (301)
...+||+||||||+|+++|..|++.| ++|+|+|+.+... |.|.....+ .+...
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~ 88 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVS 88 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEe
Confidence 34689999999999999999999987 4699999975321 122221111 11111
Q ss_pred cccc----cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeE
Q 022182 58 LAKQ----FCQLPHLPFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIE 133 (301)
Q Consensus 58 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~ 133 (301)
.... .........+. .....++.++.+.+.+.+...++.+ .+++++++++.+. +.+++++.+++++ +
T Consensus 89 ~~~~~g~~~~~~~~~~~~~-~g~~v~r~~l~~~L~~~~~~~g~~~--~~~~~v~~~~~~~--~~v~v~~~~~~g~----~ 159 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVPA-LGYVVRYGSLVAALARAVRGTPVRW--LTSTTAHAPAQDA--DGVTLALGTPQGA----R 159 (398)
T ss_pred cCCCCceEEecccccCCCc-CEEEEEhHHHHHHHHHHHHhCCCEE--EcCCeeeeeeecC--CeEEEEECCCCcc----e
Confidence 0000 00011111110 0112467888888888888877544 8899999887654 6678877654321 4
Q ss_pred EEEeeCEEEEecCC
Q 022182 134 EYYSGRFLVVASGE 147 (301)
Q Consensus 134 ~~~~ad~vVlAtG~ 147 (301)
+ +.+|.||.|+|.
T Consensus 160 ~-i~a~lvIgADG~ 172 (398)
T PRK06996 160 T-LRARIAVQAEGG 172 (398)
T ss_pred E-EeeeEEEECCCC
Confidence 6 899999999995
No 143
>PLN02697 lycopene epsilon cyclase
Probab=99.10 E-value=2e-09 Score=98.57 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=81.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC---cccCCCCCCceEEe------cccccccCCCC-CCCCCC-
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA---SIWKKYSYDRLRLH------LAKQFCQLPHL-PFPSSY- 74 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g---g~w~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~- 74 (301)
..+||+||||||+|+++|..|++.|++|+++|+..... |.|... ...+.+. .+.....++.. +.....
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~-l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDE-FKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhH-HHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 35899999999999999999999999999999865433 344321 1101000 00000000000 000000
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEE-EEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V-~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
-...++..+.+.+.+.+...++. .++++|+.+..++ +.+.+ .+.++ .+ +.++.||.|+|..+
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~---~~~~~V~~I~~~~--~~~~vv~~~dG-------~~-i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVS---YLSSKVDRITEAS--DGLRLVACEDG-------RV-IPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCE---EEeeEEEEEEEcC--CcEEEEEEcCC-------cE-EECCEEEECCCcCh
Confidence 11367888888888888877764 3677898887654 44443 33333 56 89999999999866
No 144
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.09 E-value=1.4e-09 Score=97.26 Aligned_cols=131 Identities=18% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhC---CCCeEEEecCCCC-----C-------------------cccCC---CC--CCce
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ---SIPYVILERENCY-----A-------------------SIWKK---YS--YDRL 54 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~vie~~~~~-----g-------------------g~w~~---~~--~~~~ 54 (301)
.+||+||||||+|+++|..|++. |++|+|+|+.... + |.|.. .. ...+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 9999999995211 1 01110 00 0000
Q ss_pred EEecccccc--cCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCc
Q 022182 55 RLHLAKQFC--QLPHLPFPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGR 130 (301)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~ 130 (301)
......... .+......... .....+.++.+.+.+.+... ++. ++++++|+++..++ +.|.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~--~~~~v~~~~g----- 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQ--GSVRVTLDDG----- 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcC--CeEEEEECCC-----
Confidence 000000000 00000000000 01234556666666655543 444 48899999987654 6687877654
Q ss_pred eeEEEEeeCEEEEecCCCC
Q 022182 131 EIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 131 ~~~~~~~ad~vVlAtG~~~ 149 (301)
.. +.+|.||.|+|.++
T Consensus 154 --~~-~~a~~vI~AdG~~S 169 (395)
T PRK05732 154 --ET-LTGRLLVAADGSHS 169 (395)
T ss_pred --CE-EEeCEEEEecCCCh
Confidence 46 89999999999755
No 145
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=1e-09 Score=97.76 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=77.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC--C--C---c-----ccCC--------CCCCce-----------EE
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC--Y--A---S-----IWKK--------YSYDRL-----------RL 56 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~--~--g---g-----~w~~--------~~~~~~-----------~~ 56 (301)
+||+||||||+|+++|..|++.|++|+|+|+.+. . . + .+.. ..++.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998641 1 1 0 0000 001111 00
Q ss_pred ecc-cccccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 57 HLA-KQFCQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 57 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
... .....+....... .......+..+...+.+.++... ...+++++++++++.++ +.++|++.++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~-~i~i~~~~~v~~~~~~~--~~~~v~~~~g-------~~ 153 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYP-NLTLMCPEKLADLEFSA--EGNRVTLESG-------AE 153 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCC-CeEEECCCceeEEEEcC--CeEEEEECCC-------CE
Confidence 000 0000000000000 00111233455555555554442 23448899999998765 5577887664 56
Q ss_pred EEeeCEEEEecCCCCC
Q 022182 135 YYSGRFLVVASGETTN 150 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~~ 150 (301)
+++|.||.|+|.+|.
T Consensus 154 -~~~~lvIgADG~~S~ 168 (384)
T PRK08849 154 -IEAKWVIGADGANSQ 168 (384)
T ss_pred -EEeeEEEEecCCCch
Confidence 899999999997664
No 146
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.07 E-value=7.1e-09 Score=97.73 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=84.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CCCeEEEecCCCCC--c-----------------ccCC----C-CCCceEEecc-
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYA--S-----------------IWKK----Y-SYDRLRLHLA- 59 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~vie~~~~~g--g-----------------~w~~----~-~~~~~~~~~~- 59 (301)
..+||+||||||+||++|..|++. |++|+|+|+.+... | .|.. . ....+....+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 367999999999999999999995 99999999876321 1 1100 0 0001111000
Q ss_pred ----cccc---cCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCC-CcEEEEEeecC---
Q 022182 60 ----KQFC---QLPHLPFP-SSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEAT-NMWNVKASNLL--- 126 (301)
Q Consensus 60 ----~~~~---~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~-~~~~V~~~~~~--- 126 (301)
.... .+...+.. ..++ ...++..+.+.+.+.+.+.+....+++++++++++.+++. ...+|++.+..
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~ 190 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEH 190 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCC
Confidence 0000 00000000 0111 1235667788888888777654455889999999876422 34667776421
Q ss_pred CCCceeEEEEeeCEEEEecCCCCC
Q 022182 127 SPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 127 ~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++ ..++ +.+|+||.|.|.+|.
T Consensus 191 ~g--~~~t-v~A~~lVGaDGa~S~ 211 (634)
T PRK08294 191 EG--EEET-VRAKYVVGCDGARSR 211 (634)
T ss_pred CC--ceEE-EEeCEEEECCCCchH
Confidence 11 2257 899999999998763
No 147
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.07 E-value=2.1e-09 Score=96.50 Aligned_cols=131 Identities=18% Similarity=0.269 Sum_probs=77.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecC-CC--CC---------------------cccCCC------CCCceEE
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERE-NC--YA---------------------SIWKKY------SYDRLRL 56 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~-~~--~g---------------------g~w~~~------~~~~~~~ 56 (301)
.+||+||||||+|+++|..|++.|++|+|+|+. +. .+ |.|..- .+..+..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999986 21 11 111110 0011111
Q ss_pred eccccc--ccCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCcee
Q 022182 57 HLAKQF--CQLPHLPFPS-SYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREI 132 (301)
Q Consensus 57 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~ 132 (301)
...... ..+....... .+........+...+.+.+... ++ .++++++|++++.++ +.+.|++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v--~v~~~~~v~~i~~~~--~~~~v~~~~g------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNV--TLLMPARCQSIAVGE--SEAWLTLDNG------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCe--EEEcCCeeEEEEeeC--CeEEEEECCC-------
Confidence 101000 0000000000 0001123455666666555543 34 348899999997765 5567777654
Q ss_pred EEEEeeCEEEEecCCCC
Q 022182 133 EEYYSGRFLVVASGETT 149 (301)
Q Consensus 133 ~~~~~ad~vVlAtG~~~ 149 (301)
++ +++|.||.|+|.+|
T Consensus 153 ~~-~~a~lvIgADG~~S 168 (405)
T PRK08850 153 QA-LTAKLVVGADGANS 168 (405)
T ss_pred CE-EEeCEEEEeCCCCC
Confidence 56 89999999999765
No 148
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.06 E-value=2.9e-09 Score=95.88 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=78.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCCCcc------cCCC--------CC--------------CceEEec
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASI------WKKY--------SY--------------DRLRLHL 58 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~gg~------w~~~--------~~--------------~~~~~~~ 58 (301)
.+|+|||||++|+++|..|++.| ++|+|+|+.+.++.. +... .. .......
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEE
Confidence 37999999999999999999998 599999998765421 1100 00 0000000
Q ss_pred -ccccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEE
Q 022182 59 -AKQFCQLPHLPFPSSYP-MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYY 136 (301)
Q Consensus 59 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~ 136 (301)
......+.........+ ....+.++.+.+.+.+.. ..++++++|++++.++ +.|+|++.++ .+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~v~~~~~v~~i~~~~--~~~~v~~~~g-------~~-~ 146 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE----GIASFGKRATQIEEQA--EEVQVLFTDG-------TE-Y 146 (414)
T ss_pred EecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC----ceEEcCCEEEEEEecC--CcEEEEEcCC-------CE-E
Confidence 00000000000000111 124566777666655422 2348899999998755 5688887765 46 8
Q ss_pred eeCEEEEecCCCCC
Q 022182 137 SGRFLVVASGETTN 150 (301)
Q Consensus 137 ~ad~vVlAtG~~~~ 150 (301)
.+|.||.|+|.+|.
T Consensus 147 ~ad~vVgADG~~S~ 160 (414)
T TIGR03219 147 RCDLLIGADGIKSA 160 (414)
T ss_pred EeeEEEECCCccHH
Confidence 99999999998763
No 149
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.05 E-value=3.5e-09 Score=94.89 Aligned_cols=134 Identities=17% Similarity=0.180 Sum_probs=81.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC----c---------------ccCCC---CC--CceEEeccccc-
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKKY---SY--DRLRLHLAKQF- 62 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g----g---------------~w~~~---~~--~~~~~~~~~~~- 62 (301)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+. | .|..- .+ ..+........
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 589999999999999999999999999999987532 1 11000 00 00000000000
Q ss_pred --ccCCCCCCC-CCC-CC--CCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEE
Q 022182 63 --CQLPHLPFP-SSY-PM--FVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEY 135 (301)
Q Consensus 63 --~~~~~~~~~-~~~-~~--~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~ 135 (301)
......+.. ..+ .. ..++.++.+.+.+.+... ++. ++++++|++++.++ +.+++++.+++++ .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~--~~v~v~~~~~~~~----~~- 153 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTG--NSITATIIRTNSV----ET- 153 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCC--CceEEEEEeCCCC----cE-
Confidence 000000000 000 11 246778888887776553 444 48999999997654 5677776543322 46
Q ss_pred EeeCEEEEecCCCCC
Q 022182 136 YSGRFLVVASGETTN 150 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~ 150 (301)
+.+|.||.|.|.+|.
T Consensus 154 ~~adlvIgADG~~S~ 168 (400)
T PRK06475 154 VSAAYLIACDGVWSM 168 (400)
T ss_pred EecCEEEECCCccHh
Confidence 899999999998763
No 150
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.05 E-value=8e-09 Score=93.78 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=83.6
Q ss_pred cEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCCCcccC--------CCC-------CC-ce-------------EEe-
Q 022182 9 EVIMVGAGTSGLATAACLSLQS-IPYVILERENCYASIWK--------KYS-------YD-RL-------------RLH- 57 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~gg~w~--------~~~-------~~-~~-------------~~~- 57 (301)
||||||+|.+|+++|..+++.| .+|+|+|+.+..||.-. ... .+ .. ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 99999999987765311 110 00 00 000
Q ss_pred ---------cc--cccccCCCCCC-------------CCC-C--CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEE
Q 022182 58 ---------LA--KQFCQLPHLPF-------------PSS-Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (301)
Q Consensus 58 ---------~~--~~~~~~~~~~~-------------~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~ 110 (301)
.. ..+.. ....+ +.. . ........+...+.+.+++.++++ ++++.|+.+.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i--~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDT--RLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEE--EeCCEeeEeE
Confidence 00 00000 00100 000 0 011345678888888888888765 9999999998
Q ss_pred EcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 111 YDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 111 ~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.++++..+.|...+..+ .... +.++.||+|||.++.
T Consensus 158 ~~~~g~v~Gv~~~~~~g---~~~~-~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKGKGK---GIYI-KAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEeCCC---eEEE-EecceEEEecCCCCC
Confidence 76533444455443221 2235 788999999997664
No 151
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.05 E-value=1.4e-10 Score=104.48 Aligned_cols=131 Identities=14% Similarity=0.188 Sum_probs=35.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEec-------------ccccccCCCCCCCC--C
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHL-------------AKQFCQLPHLPFPS--S 73 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--~ 73 (301)
||||||||++|++||..+++.|.+|+|+|+...+||...........-.. ...+......+.+. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999999999999999999976543211110000 00010100000000 0
Q ss_pred C--CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 74 Y--PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 74 ~--~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
+ ....+...+...+++.+.+.++++ ++++.|..+..++ +..+.|.+.+.++. .+ +.++.+|-|||-
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v--~~~t~v~~v~~~~-~~i~~V~~~~~~g~----~~-i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEV--LLGTRVVDVIRDG-GRITGVIVETKSGR----KE-IRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccccccccccc-cccccccccccccc----cc-cccccccccccc
Confidence 0 012344555666777777778777 9999999998764 23455666542221 67 999999999993
No 152
>PRK05868 hypothetical protein; Validated
Probab=99.05 E-value=5.7e-09 Score=92.56 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=76.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc--c----cCC------------------CCCCceEEecccc--
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS--I----WKK------------------YSYDRLRLHLAKQ-- 61 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg--~----w~~------------------~~~~~~~~~~~~~-- 61 (301)
+||+|||||++|+++|..|++.|++|+|+|+.+.... . +.. ..........+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4899999999999999999999999999999875431 0 000 0011111111100
Q ss_pred cccCCC-CCCCCCC--CC-CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEe
Q 022182 62 FCQLPH-LPFPSSY--PM-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYS 137 (301)
Q Consensus 62 ~~~~~~-~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ 137 (301)
...... .+..... +. ...+.++.+.+.+.+ ..+ ..++++++|++++.+. +..+|++.++ .+ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~--v~i~~~~~v~~i~~~~--~~v~v~~~dg-------~~-~~ 148 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPS--VEYLFDDSISTLQDDG--DSVRVTFERA-------AA-RE 148 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCC--cEEEeCCEEEEEEecC--CeEEEEECCC-------Ce-EE
Confidence 000000 0000000 00 123455555443322 223 3458999999997654 5677777665 46 88
Q ss_pred eCEEEEecCCCCC
Q 022182 138 GRFLVVASGETTN 150 (301)
Q Consensus 138 ad~vVlAtG~~~~ 150 (301)
+|.||.|.|.+|.
T Consensus 149 adlvIgADG~~S~ 161 (372)
T PRK05868 149 FDLVIGADGLHSN 161 (372)
T ss_pred eCEEEECCCCCch
Confidence 9999999998764
No 153
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.04 E-value=3.5e-09 Score=94.54 Aligned_cols=132 Identities=16% Similarity=0.121 Sum_probs=76.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC------C-cc-cCC------------------CCCCceEEeccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY------A-SI-WKK------------------YSYDRLRLHLAK 60 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~------g-g~-w~~------------------~~~~~~~~~~~~ 60 (301)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. + +. +.. .....+......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 469999999999999999999999999999998741 1 11 100 001111111111
Q ss_pred ccccCCCCCCCCCCC---C-CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEe-ecCCCCceeEEE
Q 022182 61 QFCQLPHLPFPSSYP---M-FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKAS-NLLSPGREIEEY 135 (301)
Q Consensus 61 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~-~~~~~~~~~~~~ 135 (301)
.... .+++.... . ......+...+.+.+...+... +++++++.+...+ .....|++. ++ ...+
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~--~~~~~~v~~~~~~-~~~~~V~~~~~g-----~~~~- 149 (390)
T TIGR02360 82 QRFR---IDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTT--VYDADDVRLHDLA-GDRPYVTFERDG-----ERHR- 149 (390)
T ss_pred EEEE---EeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeE--EEeeeeEEEEecC-CCccEEEEEECC-----eEEE-
Confidence 0111 11111100 0 1124455566666666666544 7888777664422 134456664 33 1146
Q ss_pred EeeCEEEEecCCCCC
Q 022182 136 YSGRFLVVASGETTN 150 (301)
Q Consensus 136 ~~ad~vVlAtG~~~~ 150 (301)
+++|.||.|.|.+|.
T Consensus 150 i~adlvIGADG~~S~ 164 (390)
T TIGR02360 150 LDCDFIAGCDGFHGV 164 (390)
T ss_pred EEeCEEEECCCCchh
Confidence 899999999998773
No 154
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.04 E-value=1.3e-09 Score=86.32 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=73.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc-ccCCC-CCCceEEecccccc----cCCCCCCCCCCCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS-IWKKY-SYDRLRLHLAKQFC----QLPHLPFPSSYPMFVS 79 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg-~w~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 79 (301)
..+||+||||||+|++||+.|++.|++|++||++..+|| .|... .++.+....+.... ..++.++.+ .-...+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~-g~~v~d 94 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGD-GYYVAD 94 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SS-EEEES-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCC-eEEEEc
Confidence 357999999999999999999999999999999988775 68653 45555555442211 111111111 011135
Q ss_pred HHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcE-EEEEe----ecCCCCceeEEEEeeCEEEEecCC
Q 022182 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKAS----NLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~V~~~----~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
..++...+...+-+-+..+ +..+.|+.+-..++ ++. -|.+. ...+-..+... +.++.||-|||+
T Consensus 95 ~~~~~s~L~s~a~~aGaki--fn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~-i~ak~ViDaTGH 163 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKI--FNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLT-IRAKVVIDATGH 163 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEE--EETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EE-EEESEEEE---S
T ss_pred HHHHHHHHHHHHhcCCCEE--EeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcce-EEEeEEEeCCCC
Confidence 6667777666665566544 77778887765552 221 12111 00100012357 899999999995
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.02 E-value=4.7e-09 Score=71.55 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHHHH
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEHLD 88 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (301)
+|+|||||+.|+.+|..|.+.|.+|+++++.+.+... -.+++..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~---------------------------------~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG---------------------------------FDPDAAKILE 47 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT---------------------------------SSHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh---------------------------------cCHHHHHHHH
Confidence 5899999999999999999999999999998864211 1146778888
Q ss_pred HHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeec
Q 022182 89 HYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125 (301)
Q Consensus 89 ~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 125 (301)
+..++.++++ ++++.++.++.++++ ++|++++|
T Consensus 48 ~~l~~~gV~v--~~~~~v~~i~~~~~~--~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEV--HTNTKVKEIEKDGDG--VEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEE--EESEEEEEEEEETTS--EEEEEETS
T ss_pred HHHHHCCCEE--EeCCEEEEEEEeCCE--EEEEEecC
Confidence 8888888766 999999999987733 55777653
No 156
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.01 E-value=5.7e-09 Score=96.06 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=76.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC-CCCcccCCCCCCceE----E---eccc----cc-----ccCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN-CYASIWKKYSYDRLR----L---HLAK----QF-----CQLPHL 68 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~-~~gg~w~~~~~~~~~----~---~~~~----~~-----~~~~~~ 68 (301)
..|||+|||||+||++||..+++.|.+|+++|++. .+|+........+.. . .... .. .++...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999984 454321110010000 0 0000 00 000000
Q ss_pred CC---CCC--CCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 69 PF---PSS--YPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 69 ~~---~~~--~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
.. |.. .....++..+...+.+.++.. ++. .+...|+.+..++ +....|.+.++ .. +.|+.||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~---I~q~~V~~Li~e~-grV~GV~t~dG-------~~-I~Ak~VI 150 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLD---LFQGEVEDLIVEN-GRVVGVVTQDG-------LE-FRAKAVV 150 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEecC-CEEEEEEECCC-------CE-EECCEEE
Confidence 00 100 011345566666676666654 443 3566787776543 22334556554 57 8999999
Q ss_pred EecCCCC
Q 022182 143 VASGETT 149 (301)
Q Consensus 143 lAtG~~~ 149 (301)
+|||.+.
T Consensus 151 lATGTFL 157 (618)
T PRK05192 151 LTTGTFL 157 (618)
T ss_pred EeeCcch
Confidence 9999644
No 157
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.01 E-value=6.7e-09 Score=92.31 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
.+||+|||||+.|+++|++|++.|.+|+|+|++...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 479999999999999999999999999999998643
No 158
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.01 E-value=5.7e-09 Score=92.90 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
+...+...+.+.++..++.. +.+++|+++..++ +.+.|.+.+ .+ +.+|.||+|+|.++.
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~--~~~~~V~~i~~~~--~~~~v~~~~--------~~-i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATV--RDGTKVVEIEPTE--LLVTVKTTK--------GS-YQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEE--ECCCeEEEEEecC--CeEEEEeCC--------CE-EEeCEEEEecCcchH
Confidence 44567777777777777655 8889999998754 567776543 35 889999999997543
No 159
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.00 E-value=1.1e-08 Score=94.33 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||||..|+++|+.|+++|.+|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 458999999999999999999999999999999875544
No 160
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.99 E-value=2.6e-08 Score=91.80 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||||||+|.+|+++|..+++.|.+|+|+|+.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 367999999999999999999999999999999987776
No 161
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.98 E-value=9.1e-10 Score=72.24 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=41.0
Q ss_pred EECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecc
Q 022182 12 MVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLA 59 (301)
Q Consensus 12 IIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~ 59 (301)
|||||++|+++|..|++.|++|+|+|+++.+||.+....++....+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g 48 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLG 48 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeec
Confidence 899999999999999999999999999999999988765666555443
No 162
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.97 E-value=2.1e-08 Score=92.47 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
+...+...+...+.+.|..+ +.+++|+++..++ +.|.|.+.++.+ +..+ +.++.||.|+|.++
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i--~~~~~V~~i~~~~--~~~~v~~~~~~g---~~~~-i~a~~VVnAaG~wa 215 (502)
T PRK13369 153 DDARLVVLNALDAAERGATI--LTRTRCVSARREG--GLWRVETRDADG---ETRT-VRARALVNAAGPWV 215 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEE--ecCcEEEEEEEcC--CEEEEEEEeCCC---CEEE-EEecEEEECCCccH
Confidence 34455555666677778665 8889999998754 568887766432 2256 89999999999765
No 163
>PLN02661 Putative thiazole synthesis
Probab=98.95 E-value=5.9e-09 Score=89.73 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=76.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CCCeEEEecCCCCCc-ccCCCCC-CceEEecc-cccccCCCCCCCCCCCCCC---
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYAS-IWKKYSY-DRLRLHLA-KQFCQLPHLPFPSSYPMFV--- 78 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~vie~~~~~gg-~w~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 78 (301)
..+||+|||||++|+++|+.|++. |.+|+|+|+...+|| .|....+ ....+..+ ..+..--..++... ..|+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~-dgy~vv~ 169 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ-ENYVVIK 169 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC-CCeeEec
Confidence 357999999999999999999986 899999999988765 6643211 11111100 00000001122111 1111
Q ss_pred CHHHHHHHHHHHHH-HhCCCceeeeCcEEEEEEEcCCCCcEEEEE------eecCCCC-ceeEEEEeeCEEEEecCC
Q 022182 79 SRAQFIEHLDHYVS-HFNIGPSIRYQRSVESASYDEATNMWNVKA------SNLLSPG-REIEEYYSGRFLVVASGE 147 (301)
Q Consensus 79 ~~~~~~~~l~~~~~-~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~------~~~~~~~-~~~~~~~~ad~vVlAtG~ 147 (301)
+..++...+.+.+. +.++.+ +.++.++.+..++ +...-|.+ .++.+.. .+... +.++.||+|||+
T Consensus 170 ha~e~~stLi~ka~~~~gVkI--~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~-I~AkaVVlATGh 242 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKL--FNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNV-MEAKVVVSSCGH 242 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEE--EeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeE-EECCEEEEcCCC
Confidence 33344444554443 345444 8888888887654 22222222 2211100 01246 899999999995
No 164
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.94 E-value=1.3e-08 Score=90.95 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
+...+.+.+.+.+++.++.+ +++++|+.++..+ +.|.|.+.+ .+ +.+|.||+|+|.++
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i--~~~~~V~~i~~~~--~~~~V~~~~--------g~-i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEI--RLGAEVTALDEHA--NGVVVRTTQ--------GE-YEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EcCCEEEEEEecC--CeEEEEECC--------CE-EEeCEEEECCCcch
Confidence 45667777777777777655 8899999987654 557676644 35 89999999999755
No 165
>PRK07121 hypothetical protein; Validated
Probab=98.93 E-value=4.7e-08 Score=90.00 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=36.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|+++|.++++.|.+|+|+|+....||
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 357999999999999999999999999999999887665
No 166
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.93 E-value=1.5e-08 Score=91.33 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=78.5
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC-------C--C-------CceE-------------Ee--
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY-------S--Y-------DRLR-------------LH-- 57 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~-------~--~-------~~~~-------------~~-- 57 (301)
||+|||+|.+|++||..|+++|.+|+|+|+.+..||..... . . .... .+
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 89999999999999999999999999999999877632110 0 0 0000 00
Q ss_pred --------cc---cccccCCCCCCCC----------------C------C-----CCCCCHHHHHHHHHHHHHHhCCCce
Q 022182 58 --------LA---KQFCQLPHLPFPS----------------S------Y-----PMFVSRAQFIEHLDHYVSHFNIGPS 99 (301)
Q Consensus 58 --------~~---~~~~~~~~~~~~~----------------~------~-----~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (301)
.+ ..+... ..++.. . . ........+...+.+.+++.++++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i- 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEEL-GVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDI- 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHT-T--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEE-
T ss_pred hhhhhhhcccceehhhhhh-cccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCeee-
Confidence 00 000000 000000 0 0 011256778888999999998555
Q ss_pred eeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 100 IRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 100 i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++++.++++..++ +...-|...+..++ +... +.++.||+|||.+..
T Consensus 159 -~~~~~~~~Li~e~-g~V~Gv~~~~~~~g--~~~~-i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 -RFNTRVTDLITED-GRVTGVVAENPADG--EFVR-IKAKAVILATGGFGG 204 (417)
T ss_dssp -EESEEEEEEEEET-TEEEEEEEEETTTC--EEEE-EEESEEEE----BGG
T ss_pred -eccceeeeEEEeC-CceeEEEEEECCCC--eEEE-EeeeEEEeccCcccc
Confidence 9999999998865 23334455422222 3356 889999999997664
No 167
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=85.53 Aligned_cols=160 Identities=17% Similarity=0.266 Sum_probs=95.5
Q ss_pred cEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|||||++|.+||..|+.+ ..+++++-.++.+-.. ..-..+.+|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksv--------------------------------tn~~~i~~y 48 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV--------------------------------TNYQKIGQY 48 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH--------------------------------hhHHHHHHH
Confidence 468999999999999999987 4578888765532110 011123333
Q ss_pred HHHH------HHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCCCcc
Q 022182 87 LDHY------VSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIRGLC 160 (301)
Q Consensus 87 l~~~------~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~g~~ 160 (301)
++++ ..+++-... ++-..|..++. ....++++++ .. +.|++|++||| .+|... ..|.+
T Consensus 49 lekfdv~eq~~~elg~~f~-~~~~~v~~~~s----~ehci~t~~g-------~~-~ky~kKOG~tg--~kPklq-~E~~n 112 (334)
T KOG2755|consen 49 LEKFDVKEQNCHELGPDFR-RFLNDVVTWDS----SEHCIHTQNG-------EK-LKYFKLCLCTG--YKPKLQ-VEGIN 112 (334)
T ss_pred HHhcCccccchhhhcccHH-HHHHhhhhhcc----ccceEEecCC-------ce-eeEEEEEEecC--CCccee-ecCCC
Confidence 3321 111111110 01111333322 3355777776 56 88999999999 666543 22222
Q ss_pred ccccCCCCCccEEeccCCCCC-----CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhH
Q 022182 161 SFCSSATGTGEVIHSTQYKNG-----KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMV 228 (301)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~ 228 (301)
. .++-..+..+. ...+.|+|+|+|.|-+++|++.++. +.+|+|....+ +|-..+.+
T Consensus 113 ~---------~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~-~IsaTFfd 173 (334)
T KOG2755|consen 113 P---------KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDE-GISATFFD 173 (334)
T ss_pred c---------eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecch-hhhhcccC
Confidence 1 24433333322 2335799999999999999998884 55899998887 67655443
No 168
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.91 E-value=1.3e-08 Score=96.95 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=32.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+||+|||||++|+++|++|+++|.+|+|+|+...
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6999999999999999999999999999999853
No 169
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.91 E-value=1.4e-08 Score=89.79 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=71.8
Q ss_pred cEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCc--ccCCCCCCce-----------EEecccccccCCCCCCCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS--IWKKYSYDRL-----------RLHLAKQFCQLPHLPFPSS 73 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg--~w~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 73 (301)
||+|||||++|+++|.+|++. |++|+++|+.+..++ +|.....+-. ....+.....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999987 999999999987776 3422100000 0000000000010000000
Q ss_pred -CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 74 -YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 74 -~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
......+.++.+++.+.+ +.. ++++++|++++. +. |++.++ .+ +.++.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~~----~~--v~l~dg-------~~-~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLDA----DG--VDLAPG-------TR-INARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEeC----CE--EEECCC-------CE-EEeeEEEECCCCCC
Confidence 011235667777665433 322 477888988832 23 444443 57 89999999999653
No 170
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.91 E-value=4.2e-08 Score=88.27 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+||+|||||..|+++|++|++.|.+|+|+|++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999874
No 171
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.91 E-value=3e-08 Score=92.12 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
..+||+|||||..|+++|+.|+++|.+|+|+|++...+
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~ 42 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT 42 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 35899999999999999999999999999999976443
No 172
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.91 E-value=2.3e-08 Score=91.19 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHH----hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 79 SRAQFIEHLDHYVSH----FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~----~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
+...+...+.+.+++ .+....++++++|++++... ++.|.|.+.+ .+ +.+|+||+|+|.++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~--------G~-i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNR--------GE-IRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECC--------CE-EEeCEEEECcChhHH
Confidence 445666666677777 66445558999999998753 3568887765 35 899999999998663
No 173
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.90 E-value=8.9e-09 Score=88.47 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=87.7
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhC------CCCeEEEecCCCCCcc------------------cCCCC------
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYASI------------------WKKYS------ 50 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~vie~~~~~gg~------------------w~~~~------ 50 (301)
|......+||+||||||+||++|.+|.++ .++|+|+|+...+||. |....
T Consensus 70 ~~R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 70 MERESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP 149 (621)
T ss_pred chhhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence 34455678999999999999999999874 5689999999999872 22110
Q ss_pred --CCceEEecccccccCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecC-
Q 022182 51 --YDRLRLHLAKQFCQLPHL-PFPSSYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL- 126 (301)
Q Consensus 51 --~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~- 126 (301)
-+.+.....+.-...|.. |+...-....+-.++..|+-+.|+.+|+++ .-+..+..+-+++++...-|.+.+-.
T Consensus 150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEi--yPg~aaSevly~edgsVkGiaT~D~GI 227 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEI--YPGFAASEVLYDEDGSVKGIATNDVGI 227 (621)
T ss_pred ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCcee--ccccchhheeEcCCCcEeeEeeccccc
Confidence 001111111111111111 111111122466899999999999999887 66666666666665555555554310
Q ss_pred ---C-CC-c--eeEEEEeeCEEEEecCCC
Q 022182 127 ---S-PG-R--EIEEYYSGRFLVVASGET 148 (301)
Q Consensus 127 ---~-~~-~--~~~~~~~ad~vVlAtG~~ 148 (301)
+ .+ + ..-+ +.++.-|+|-|.+
T Consensus 228 ~k~G~pKd~FerGme-~hak~TifAEGc~ 255 (621)
T KOG2415|consen 228 SKDGAPKDTFERGME-FHAKVTIFAEGCH 255 (621)
T ss_pred cCCCCccccccccce-ecceeEEEecccc
Confidence 0 00 0 0135 7788899998853
No 174
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.90 E-value=7.9e-08 Score=88.06 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.+. +. ...++.+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il----------------------~~-----------~~~~~~~~ 226 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL----------------------PT-----------EDAELSKE 226 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC----------------------Cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01356666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|+.++..+.++...+...++ ...+ +.+|.||+|+| ..|+.+
T Consensus 227 l~~~l~~~gI~i--~~~~~v~~i~~~~~~~~~~~~~~~g-----~~~~-i~~D~vi~a~G--~~p~~~ 284 (472)
T PRK05976 227 VARLLKKLGVRV--VTGAKVLGLTLKKDGGVLIVAEHNG-----EEKT-LEADKVLVSVG--RRPNTE 284 (472)
T ss_pred HHHHHHhcCCEE--EeCcEEEEEEEecCCCEEEEEEeCC-----ceEE-EEeCEEEEeeC--CccCCC
Confidence 777777778666 8999999997521123222333333 1146 89999999999 666554
No 175
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.89 E-value=2.2e-08 Score=83.92 Aligned_cols=145 Identities=20% Similarity=0.288 Sum_probs=96.3
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC--c---------------------------ccCCCC-
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA--S---------------------------IWKKYS- 50 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g--g---------------------------~w~~~~- 50 (301)
|+.+....+++|||||.-|+++|++|+++|.++.++|+.+.+- | .|+...
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 3445556799999999999999999999999999999876331 1 222110
Q ss_pred -------CCceEEec--c------------------------c-ccccCC-CCCCCCCCC-------CCCCHHHHHHHHH
Q 022182 51 -------YDRLRLHL--A------------------------K-QFCQLP-HLPFPSSYP-------MFVSRAQFIEHLD 88 (301)
Q Consensus 51 -------~~~~~~~~--~------------------------~-~~~~~~-~~~~~~~~~-------~~~~~~~~~~~l~ 88 (301)
.....+.. + . ---.|| ..++++++. .+....+....++
T Consensus 81 ~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~ 160 (399)
T KOG2820|consen 81 ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQ 160 (399)
T ss_pred hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHH
Confidence 00000000 0 0 001244 445666554 3456677888889
Q ss_pred HHHHHhCCCceeeeCcEEEEEEEcCC-CCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 89 HYVSHFNIGPSIRYQRSVESASYDEA-TNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 89 ~~~~~~~~~~~i~~~~~V~~i~~~~~-~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
..+++.|..+ +.+..|..+..... +....|.+.++ .. +.++.+|+++|.+-...+|.
T Consensus 161 ~~~~~~G~i~--~dg~~v~~~~~~~e~~~~v~V~Tt~g-------s~-Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 161 DKARELGVIF--RDGEKVKFIKFVDEEGNHVSVQTTDG-------SI-YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHcCeEE--ecCcceeeEeeccCCCceeEEEeccC-------Ce-eecceEEEEecHHHHhhcCc
Confidence 9999999766 89999988876443 23455666655 56 89999999999866555553
No 176
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.89 E-value=1.9e-08 Score=88.92 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=34.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYA 43 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~g 43 (301)
.+||+|||||..|+++|+.|.+++ ++|+|+|+...++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 589999999999999999999998 9999999998776
No 177
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.89 E-value=7.1e-09 Score=90.56 Aligned_cols=124 Identities=16% Similarity=0.199 Sum_probs=71.8
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEE-ecCCCCCcccCCCCCCceEEecc-----------ccc--------ccCCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVIL-ERENCYASIWKKYSYDRLRLHLA-----------KQF--------CQLPHL 68 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vi-e~~~~~gg~w~~~~~~~~~~~~~-----------~~~--------~~~~~~ 68 (301)
||+|||||+||+.||..+++.|.+|+++ .+.+.++..- +.+.+.-... ..+ .++...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~---Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS---CNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S---SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc---chhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 7999999999999999999999999999 3444444321 1111110000 000 000000
Q ss_pred ---CCCCCC--CCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEE
Q 022182 69 ---PFPSSY--PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLV 142 (301)
Q Consensus 69 ---~~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vV 142 (301)
.-|..+ ....++..+.+++++.++.. ++. ....+|+.+..+. +..+.|.+.++ .. +.++.||
T Consensus 78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~-~~v~GV~~~~g-------~~-~~a~~vV 145 (392)
T PF01134_consen 78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVEN-GKVKGVVTKDG-------EE-IEADAVV 145 (392)
T ss_dssp STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECT-TEEEEEEETTS-------EE-EEECEEE
T ss_pred cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecC-CeEEEEEeCCC-------CE-EecCEEE
Confidence 001111 12357888888888888764 333 3567899998755 34556777665 67 9999999
Q ss_pred EecCC
Q 022182 143 VASGE 147 (301)
Q Consensus 143 lAtG~ 147 (301)
+|||.
T Consensus 146 laTGt 150 (392)
T PF01134_consen 146 LATGT 150 (392)
T ss_dssp E-TTT
T ss_pred Eeccc
Confidence 99994
No 178
>PLN02985 squalene monooxygenase
Probab=98.88 E-value=3.6e-08 Score=90.74 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC----c---------------ccCC------CCCCceEEeccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA----S---------------IWKK------YSYDRLRLHLAK 60 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g----g---------------~w~~------~~~~~~~~~~~~ 60 (301)
..+||+|||||++|+++|..|++.|++|+|+|+..... | .|.. ............
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g 121 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDG 121 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECC
Confidence 46799999999999999999999999999999875311 1 1110 001111111111
Q ss_pred c--cccCCCCC--CCCCC-CCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEE
Q 022182 61 Q--FCQLPHLP--FPSSY-PMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEE 134 (301)
Q Consensus 61 ~--~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~ 134 (301)
. ...++... .+... ....++.++.+.+.+.+... ++.. ..+ +++++..++ +....|++...++ +..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i--~~g-tvv~li~~~-~~v~gV~~~~~dG---~~~~ 194 (514)
T PLN02985 122 KEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRL--EEG-TVKSLIEEK-GVIKGVTYKNSAG---EETT 194 (514)
T ss_pred EEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEE--Eee-eEEEEEEcC-CEEEEEEEEcCCC---CEEE
Confidence 0 01111100 00000 11246678888888877765 3432 443 566665433 2222344432221 1245
Q ss_pred EEeeCEEEEecCCCCC
Q 022182 135 YYSGRFLVVASGETTN 150 (301)
Q Consensus 135 ~~~ad~vVlAtG~~~~ 150 (301)
+.+|.||.|+|.+|.
T Consensus 195 -~~AdLVVgADG~~S~ 209 (514)
T PLN02985 195 -ALAPLTVVCDGCYSN 209 (514)
T ss_pred -EECCEEEECCCCchH
Confidence 779999999998763
No 179
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.88 E-value=4.1e-08 Score=90.36 Aligned_cols=131 Identities=13% Similarity=0.171 Sum_probs=77.4
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc-cCCCCCCc-----eE--Eeccc---------ccccCCCC--
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI-WKKYSYDR-----LR--LHLAK---------QFCQLPHL-- 68 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~-w~~~~~~~-----~~--~~~~~---------~~~~~~~~-- 68 (301)
|||+|||||++|+.+|..+++.|.+|+++|+.....|. ...+...+ +. +.... ...++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999987532221 10000000 00 00000 00001111
Q ss_pred ---CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEe
Q 022182 69 ---PFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (301)
Q Consensus 69 ---~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlA 144 (301)
|.........++..+..++.+.+++. ++. .+...|+.+..++.+..+.|.+.++ .. +.|+.||+|
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~V~GV~t~~G-------~~-I~Ad~VILA 149 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDEIKGVVTQDG-------LK-FRAKAVIIT 149 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCcEEEEEECCC-------CE-EECCEEEEc
Confidence 10000112456777778888888776 333 3455677775542234556776654 46 899999999
Q ss_pred cCCCC
Q 022182 145 SGETT 149 (301)
Q Consensus 145 tG~~~ 149 (301)
||.+.
T Consensus 150 TGtfL 154 (617)
T TIGR00136 150 TGTFL 154 (617)
T ss_pred cCccc
Confidence 99653
No 180
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.87 E-value=9.9e-08 Score=87.22 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=76.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||||++|+.+|..|.+.|.+|+++|+.+.+. +. ...++...
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~ 216 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL----------------------PG-----------EDAEVSKV 216 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC----------------------CC-----------CCHHHHHH
Confidence 4689999999999999999999999999999876431 00 01356666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|++++.++ +.+.+...++. ..+ +.+|.||+|+| ..|+..
T Consensus 217 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~g~-----~~~-i~~D~vi~a~G--~~p~~~ 272 (461)
T TIGR01350 217 VAKALKKKGVKI--LTNTKVTAVEKND--DQVVYENKGGE-----TET-LTGEKVLVAVG--RKPNTE 272 (461)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEeCCc-----EEE-EEeCEEEEecC--CcccCC
Confidence 777777777665 8999999997654 44555554331 146 89999999999 556544
No 181
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.87 E-value=2.4e-08 Score=91.11 Aligned_cols=35 Identities=34% Similarity=0.595 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENC 41 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~ 41 (301)
.+||+|||||++|+++|++|++. |.+|+|+|++..
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 47999999999999999999998 899999998764
No 182
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.86 E-value=9.1e-08 Score=87.57 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=79.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC--CCcccCC-CC----CCc---eE--Eeccccc------------
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC--YASIWKK-YS----YDR---LR--LHLAKQF------------ 62 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~--~gg~w~~-~~----~~~---~~--~~~~~~~------------ 62 (301)
.+||+|||+|++|+++|..|++.|.+|+|+|+.+. .||.-.. .. ... .. ...+..+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRT 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCC
Confidence 57999999999999999999999999999999874 4542110 00 000 00 0000000
Q ss_pred ------------------ccCCCCCCCCCCC--C---------CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcC
Q 022182 63 ------------------CQLPHLPFPSSYP--M---------FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDE 113 (301)
Q Consensus 63 ------------------~~~~~~~~~~~~~--~---------~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~ 113 (301)
..-...++..... . ......+...+.+.+++.++.+ +++++|+.+..++
T Consensus 84 ~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i--~~~t~v~~l~~~~ 161 (466)
T PRK08274 84 DEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEI--RYDAPVTALELDD 161 (466)
T ss_pred CHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEE--EcCCEEEEEEecC
Confidence 0000001100000 0 0013567777888888888665 8999999997643
Q ss_pred CCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 114 ATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 114 ~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
+....|...+..+ .... +.++.||+|||.+.
T Consensus 162 -g~v~gv~~~~~~g---~~~~-i~a~~VIlAtGg~~ 192 (466)
T PRK08274 162 -GRFVGARAGSAAG---GAER-IRAKAVVLAAGGFE 192 (466)
T ss_pred -CeEEEEEEEccCC---ceEE-EECCEEEECCCCCC
Confidence 2333444432111 1256 88999999999654
No 183
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.86 E-value=6e-08 Score=90.78 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=77.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC---CCcccCC------C-------------------CC-CceE
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC---YASIWKK------Y-------------------SY-DRLR 55 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~---~gg~w~~------~-------------------~~-~~~~ 55 (301)
.++.+|+|||||++|+++|..|++.|++|+|||+.+. ..|.+.. + .+ ....
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3457999999999999999999999999999999752 1111100 0 00 0000
Q ss_pred Ee---c--cc-ccccCCCCCC-CC-CCC--CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeec
Q 022182 56 LH---L--AK-QFCQLPHLPF-PS-SYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNL 125 (301)
Q Consensus 56 ~~---~--~~-~~~~~~~~~~-~~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~ 125 (301)
.. . .. ....+..... .. ..+ ...++.++.+.|.+. .+.. .++++++|++++.++ +.++|++.++
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~a---lg~~-~i~~g~~V~~I~~~~--d~VtV~~~dG 232 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARA---VGED-VIRNESNVVDFEDSG--DKVTVVLENG 232 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhh---CCCC-EEEcCCEEEEEEEeC--CEEEEEECCC
Confidence 00 0 00 0011111100 00 011 124667776666432 3332 247888999997654 6677777664
Q ss_pred CCCCceeEEEEeeCEEEEecCCCC
Q 022182 126 LSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 126 ~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.+ +.+|.||.|.|.+|
T Consensus 233 -------~t-i~aDlVVGADG~~S 248 (668)
T PLN02927 233 -------QR-YEGDLLVGADGIWS 248 (668)
T ss_pred -------CE-EEcCEEEECCCCCc
Confidence 56 88999999999866
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.85 E-value=6.5e-08 Score=86.04 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+.+.. ... .+++..+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------------------~~~-~~~~~~~ 188 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------------------SLM-PPEVSSR 188 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------------------hhC-CHHHHHH
Confidence 46899999999999999999999999999998764310 000 1245566
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
+.+..++.++.+ .+++++++++.++ +.+.+.+.++ .+ +.+|.||+|+|.
T Consensus 189 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vI~a~G~ 237 (377)
T PRK04965 189 LQHRLTEMGVHL--LLKSQLQGLEKTD--SGIRATLDSG-------RS-IEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHhCCCEE--EECCeEEEEEccC--CEEEEEEcCC-------cE-EECCEEEECcCC
Confidence 777777778655 8899999987654 5577777654 56 899999999994
No 185
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.85 E-value=3.8e-08 Score=87.13 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+||+|||||++|+++|++|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5899999999999999999999999999999764
No 186
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.84 E-value=2.1e-07 Score=85.03 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=76.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~ 212 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL----------------------PR-----------EEPEISAA 212 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC----------------------Cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876431 00 01345666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..+..++++ +++++|+.++.++ +.+.+.+...++. .+ +.+|.||+|+| ..|+..
T Consensus 213 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~ViiA~G--~~p~~~ 269 (463)
T TIGR02053 213 VEEALAEEGIEV--VTSAQVKAVSVRG--GGKIITVEKPGGQ----GE-VEADELLVATG--RRPNTD 269 (463)
T ss_pred HHHHHHHcCCEE--EcCcEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEEeEC--CCcCCC
Confidence 777777777665 8999999997654 4455555432111 57 89999999999 666554
No 187
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.84 E-value=9.9e-08 Score=86.87 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~g 43 (301)
..+||+|||||++|+++|..|++. +.+|+|+|+.+.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 467999999999999999999998 89999999944443
No 188
>PRK08275 putative oxidoreductase; Provisional
Probab=98.83 E-value=1.6e-07 Score=87.66 Aligned_cols=145 Identities=11% Similarity=0.113 Sum_probs=82.3
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCC-CcccCCC--CCCc-eE--Eecccccc---------
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY-ASIWKKY--SYDR-LR--LHLAKQFC--------- 63 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~-gg~w~~~--~~~~-~~--~~~~~~~~--------- 63 (301)
|......+||+|||+|.+|++||..+++. |.+|+|+|+.... +|.+... .... +. .+.+..+.
T Consensus 3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~ 82 (554)
T PRK08275 3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDG 82 (554)
T ss_pred CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCC
Confidence 44444568999999999999999999987 6899999998753 2221100 0000 00 00000000
Q ss_pred ---------------------cCCCCCCCCC------------CC----CCCCHHHHHHHHHHHHHHhCCCceeeeCcEE
Q 022182 64 ---------------------QLPHLPFPSS------------YP----MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSV 106 (301)
Q Consensus 64 ---------------------~~~~~~~~~~------------~~----~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V 106 (301)
.--..++... .. ....+..+.+.+.+.+++.++++ ..++.+
T Consensus 83 ~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~~~v 160 (554)
T PRK08275 83 IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLI--TNRIMA 160 (554)
T ss_pred CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEE--EcceEE
Confidence 0000011000 00 01245677888888888777655 899999
Q ss_pred EEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 107 ESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 107 ~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
+.+..++++...-+...+..++ .... +.++.||+|||.++.
T Consensus 161 ~~Li~~~~g~v~Gv~~~~~~~g--~~~~-i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 161 TRLLTDADGRVAGALGFDCRTG--EFLV-IRAKAVILCCGAAGR 201 (554)
T ss_pred EEEEEcCCCeEEEEEEEecCCC--cEEE-EECCEEEECCCCccc
Confidence 9997653222223332221111 2246 889999999997653
No 189
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.83 E-value=9.2e-08 Score=85.99 Aligned_cols=37 Identities=38% Similarity=0.473 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CC-CeEEEecCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENCY 42 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~vie~~~~~ 42 (301)
..+||+|||||..|+++|++|++. |. +|+|+|+....
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~ 67 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG 67 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc
Confidence 467999999999999999999985 85 99999997643
No 190
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.83 E-value=8.3e-08 Score=86.21 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=81.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
.+.+++|||||+.|+..|..++++|.+|+|+|+.+.+- +. ..+++.+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL----------------------p~-----------~D~ei~~ 218 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL----------------------PG-----------EDPEISK 218 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------Cc-----------CCHHHHH
Confidence 46789999999999999999999999999999988632 11 1247888
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPD 155 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~ 155 (301)
.+.+..++.++.+ +.+++++.++..+ +...++++++.. .. +.+|.|++|+| ..|+...
T Consensus 219 ~~~~~l~~~gv~i--~~~~~v~~~~~~~--~~v~v~~~~g~~-----~~-~~ad~vLvAiG--R~Pn~~~ 276 (454)
T COG1249 219 ELTKQLEKGGVKI--LLNTKVTAVEKKD--DGVLVTLEDGEG-----GT-IEADAVLVAIG--RKPNTDG 276 (454)
T ss_pred HHHHHHHhCCeEE--EccceEEEEEecC--CeEEEEEecCCC-----CE-EEeeEEEEccC--CccCCCC
Confidence 8888888766555 8999999987755 336677766532 26 78999999999 6676654
No 191
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.83 E-value=7.2e-08 Score=90.83 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3458999999999999999999999999999999865444
No 192
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=2e-07 Score=85.22 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+++.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~~~~~~~~ 218 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL----------------------PG-----------EDKEISKL 218 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC----------------------Cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999876531 00 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ +++++|++++.++ +.+.+.+.+++ ...+ +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~gg----~~~~-i~~D~vi~a~G--~~p~~~ 275 (462)
T PRK06416 219 AERALKKRGIKI--KTGAKAKKVEQTD--DGVTVTLEDGG----KEET-LEADYVLVAVG--RRPNTE 275 (462)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEEEeC--CEEEEEEEeCC----eeEE-EEeCEEEEeeC--CccCCC
Confidence 777777777665 8999999998654 45666655432 2256 89999999999 566544
No 193
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=2e-07 Score=87.40 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
...+||+|||+|.+|++||..+++.|.+|+|+|+....+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~ 48 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTR 48 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 346799999999999999999999999999999976443
No 194
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.81 E-value=1.3e-07 Score=85.48 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=37.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
..+||+|||||+.|+.+|..++.+|++|+++|+++...|+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 57899999999999999999999999999999999776643
No 195
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.81 E-value=2.3e-07 Score=84.67 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=74.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ..+++.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll----------------------~---------~--~d~e~~~~ 216 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL----------------------P---------G--EDEDIAHI 216 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------c---------c--ccHHHHHH
Confidence 4689999999999999999999999999999876421 0 0 01356677
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|+.++.++ ..+.+.. ++ ...+ +.+|.|++|+| ..|+..
T Consensus 217 l~~~L~~~GI~i--~~~~~V~~i~~~~--~~v~~~~-~g-----~~~~-i~~D~vivA~G--~~p~~~ 271 (458)
T PRK06912 217 LREKLENDGVKI--FTGAALKGLNSYK--KQALFEY-EG-----SIQE-VNAEFVLVSVG--RKPRVQ 271 (458)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEcC--CEEEEEE-CC-----ceEE-EEeCEEEEecC--CccCCC
Confidence 777777777666 8999999997643 3333332 22 1146 89999999999 666554
No 196
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=9.4e-08 Score=88.96 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=82.0
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC-CCcccCC--CCC-------Cce-------------EEe
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC-YASIWKK--YSY-------DRL-------------RLH 57 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~-~gg~w~~--~~~-------~~~-------------~~~ 57 (301)
|..+...+||+|||+|.||++||..+ +.|.+|+|+|+... .||.-.. ..+ ... ..+
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d 79 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLND 79 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCC
Confidence 55555678999999999999999999 89999999999764 3442111 000 000 000
Q ss_pred ----------ccc---ccccCCCCCCCC-----------CCCCC--------CCHHHHHHHHHHHHHHhCCCceeeeCcE
Q 022182 58 ----------LAK---QFCQLPHLPFPS-----------SYPMF--------VSRAQFIEHLDHYVSHFNIGPSIRYQRS 105 (301)
Q Consensus 58 ----------~~~---~~~~~~~~~~~~-----------~~~~~--------~~~~~~~~~l~~~~~~~~~~~~i~~~~~ 105 (301)
.+. .+.. -..+|.. ....+ ..+..+...+.+.+++.++.+ ++++.
T Consensus 80 ~~lv~~~~~~s~~~i~~L~~-~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i--~~~t~ 156 (543)
T PRK06263 80 PKLVEILVKEAPKRLKDLEK-FGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKI--LEEVM 156 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEE--EeCeE
Confidence 000 0000 0011110 00001 135677777877777767655 99999
Q ss_pred EEEEEEcCCCCcEEEEEee-cCCCCceeEEEEeeCEEEEecCCCC
Q 022182 106 VESASYDEATNMWNVKASN-LLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 106 V~~i~~~~~~~~~~V~~~~-~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
++.+..++.....-+...+ ..+ .... +.++.||+|||.++
T Consensus 157 v~~Li~~~~~~v~Gv~~~~~~~g---~~~~-i~AkaVIlATGG~~ 197 (543)
T PRK06263 157 AIKLIVDENREVIGAIFLDLRNG---EIFP-IYAKATILATGGAG 197 (543)
T ss_pred eeeeEEeCCcEEEEEEEEECCCC---cEEE-EEcCcEEECCCCCC
Confidence 9998765421133333322 111 2246 88999999999765
No 197
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.79 E-value=9.5e-08 Score=89.90 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 357999999999999999999999999999999876554
No 198
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=2.2e-07 Score=87.02 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=37.4
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
|+.....+||+|||+|.||++||..+++.|.+|+|+|+....+|
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 44444567999999999999999999999999999999865543
No 199
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=8.9e-08 Score=89.91 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 45799999999999999999999999999999986543
No 200
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.77 E-value=1.5e-07 Score=86.11 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
+...+...+.+.+++.|..+ +++++|+++..++ ++.|.+.+.+..++ ...+ +.+++||+|+|.++.
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i--~~~t~V~~i~~~~-~~~v~v~~~~~~~g--~~~~-i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTI--RFGHEVRNLKRQS-DGSWTVTVKNTRTG--GKRT-LNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEE--EeCCEEEEEEEcC-CCeEEEEEeeccCC--ceEE-EECCEEEECCCcchH
Confidence 44666777777777777655 8999999998754 24587765432111 1146 899999999998663
No 201
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.77 E-value=8.4e-08 Score=84.28 Aligned_cols=133 Identities=18% Similarity=0.328 Sum_probs=92.3
Q ss_pred CcEEEECCChHHHHHHHHHhhC-------------CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQ-------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~-------------g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (301)
..++|+|||+.|..+|.+|+.. ..+|+++|+.+.+- |.++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL----------------------p~~~----- 208 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL----------------------PMFP----- 208 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc----------------------cCCC-----
Confidence 3799999999999999998753 13899999887642 2221
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+++..|.++..++.|+++ ++++.|++++.+. |++.+++ ++ +.++.+|.|+|....|..-
T Consensus 209 ------~~l~~~a~~~L~~~GV~v--~l~~~Vt~v~~~~------v~~~~g~------~~-I~~~tvvWaaGv~a~~~~~ 267 (405)
T COG1252 209 ------PKLSKYAERALEKLGVEV--LLGTPVTEVTPDG------VTLKDGE------EE-IPADTVVWAAGVRASPLLK 267 (405)
T ss_pred ------HHHHHHHHHHHHHCCCEE--EcCCceEEECCCc------EEEccCC------ee-EecCEEEEcCCCcCChhhh
Confidence 468889999999999877 9999999997755 6676652 36 8999999999976655554
Q ss_pred CCCCccccccCCCCCccEEeccCCCCCCCCCCCeEEEECCCc
Q 022182 155 DIRGLCSFCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGN 196 (301)
Q Consensus 155 ~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~ 196 (301)
.+-|.+.- ..|+++....... . ...+|.++|-..
T Consensus 268 ~l~~~e~d-----r~Grl~V~~~L~~-~--~~~~IFa~GD~A 301 (405)
T COG1252 268 DLSGLETD-----RRGRLVVNPTLQV-P--GHPDIFAAGDCA 301 (405)
T ss_pred hcChhhhc-----cCCCEEeCCCccc-C--CCCCeEEEeccc
Confidence 53223321 0355554333322 1 135688887654
No 202
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.76 E-value=2e-07 Score=87.70 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=33.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY 42 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~ 42 (301)
..+||+|||+|.||++||..+++. |.+|+|+|+....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 357999999999999999999998 9999999998743
No 203
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.75 E-value=1.5e-07 Score=87.37 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=81.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc--------cCCCCC-Cce-------------EEe------
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI--------WKKYSY-DRL-------------RLH------ 57 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~--------w~~~~~-~~~-------------~~~------ 57 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....+|. +..... +.. .++
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3579999999999999999999999999999998866541 110000 000 000
Q ss_pred ----ccc---ccccCCCCCCCCC--------------CC------CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEE
Q 022182 58 ----LAK---QFCQLPHLPFPSS--------------YP------MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESAS 110 (301)
Q Consensus 58 ----~~~---~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~ 110 (301)
.+. .+.. -..+|... .+ .-..+..+...+.+.+++.++.+ +.++.++.+.
T Consensus 95 ~~~~s~~~i~~L~~-~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i--~~~~~v~~Li 171 (541)
T PRK07804 95 LVAEGPRAVRELVA-LGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDI--REHALALDLL 171 (541)
T ss_pred HHHHHHHHHHHHHH-cCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEE--EECeEeeeeE
Confidence 000 0000 00111100 00 01245678888888888877554 8999999987
Q ss_pred EcCCCCcEEEEEee---cCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 111 YDEATNMWNVKASN---LLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 111 ~~~~~~~~~V~~~~---~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.++++...-+...+ +..+ .... +.++.||+|||.++.
T Consensus 172 ~~~~g~v~Gv~~~~~~~~~~~--g~~~-i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 172 TDGTGAVAGVTLHVLGEGSPD--GVGA-VHAPAVVLATGGLGQ 211 (541)
T ss_pred EcCCCeEEEEEEEeccCCCCC--cEEE-EEcCeEEECCCCCCC
Confidence 65422233343331 1111 1146 889999999997664
No 204
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=1.6e-07 Score=85.18 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=74.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + . ..+++...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l----------------------~---------~--~~~~~~~~ 203 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL----------------------P---------R--EEPSVAAL 203 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC----------------------C---------C--CCHHHHHH
Confidence 4689999999999999999999999999999876431 0 0 01355666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.. +++++|+.++.++ +.+.+.. ++ .+ +.+|.||+|+| ..|+..
T Consensus 204 ~~~~l~~~GI~i--~~~~~V~~i~~~~--~~v~v~~-~g-------~~-i~~D~viva~G--~~p~~~ 256 (438)
T PRK07251 204 AKQYMEEDGITF--LLNAHTTEVKNDG--DQVLVVT-ED-------ET-YRFDALLYATG--RKPNTE 256 (438)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEecC--CEEEEEE-CC-------eE-EEcCEEEEeeC--CCCCcc
Confidence 777777778665 8899999997643 3444433 22 56 89999999999 666543
No 205
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.75 E-value=3.1e-07 Score=86.59 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 457999999999999999999999999999999875553
No 206
>PRK06370 mercuric reductase; Validated
Probab=98.74 E-value=4.8e-07 Score=82.70 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ...++.+.
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~----------------------~-----------~~~~~~~~ 217 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP----------------------R-----------EDEDVAAA 217 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc----------------------c-----------cCHHHHHH
Confidence 47899999999999999999999999999998765320 0 01346667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|..++.++ +...+.+...++. .+ +.+|.||+|+| ..|+..
T Consensus 218 l~~~l~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~~~~~----~~-i~~D~Vi~A~G--~~pn~~ 274 (463)
T PRK06370 218 VREILEREGIDV--RLNAECIRVERDG--DGIAVGLDCNGGA----PE-ITGSHILVAVG--RVPNTD 274 (463)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEEeCCCc----eE-EEeCEEEECcC--CCcCCC
Confidence 777777778665 8999999997654 3344544321111 56 89999999999 556543
No 207
>PRK12839 hypothetical protein; Provisional
Probab=98.74 E-value=2e-07 Score=86.96 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
+..+||+|||+|.+|+++|..|++.|.+|+|+|+...+||.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 45789999999999999999999999999999999877764
No 208
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.73 E-value=1.2e-07 Score=84.91 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=74.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+.+. ...+.+.++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------~~~~~~~~~ 191 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR--------------------------------NAPPPVQRY 191 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh--------------------------------hcCHHHHHH
Confidence 468999999999999999999999999999987653210 001245667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
+.+..++.++.+ ++++++++++. + +.+.+.+.++ ++ +.+|.||+|+| ..|+
T Consensus 192 l~~~l~~~GV~i--~~~~~V~~i~~-~--~~~~v~l~~g-------~~-i~aD~Vv~a~G--~~pn 242 (396)
T PRK09754 192 LLQRHQQAGVRI--LLNNAIEHVVD-G--EKVELTLQSG-------ET-LQADVVIYGIG--ISAN 242 (396)
T ss_pred HHHHHHHCCCEE--EeCCeeEEEEc-C--CEEEEEECCC-------CE-EECCEEEECCC--CChh
Confidence 777777778665 88999998865 2 3455666554 56 89999999999 5454
No 209
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=4.2e-07 Score=85.89 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
.+||+|||+|.+|++||..+++.|.+|+|+|+...++
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999866543
No 210
>PRK06116 glutathione reductase; Validated
Probab=98.72 E-value=4.7e-07 Score=82.52 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++.+.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------~~-----------~~~~~~~~ 213 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL----------------------RG-----------FDPDIRET 213 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc----------------------cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|.+++.++. +.+.+.+.++ .+ +.+|.||+|+| ..|+..
T Consensus 214 l~~~L~~~GV~i--~~~~~V~~i~~~~~-g~~~v~~~~g-------~~-i~~D~Vv~a~G--~~p~~~ 268 (450)
T PRK06116 214 LVEEMEKKGIRL--HTNAVPKAVEKNAD-GSLTLTLEDG-------ET-LTVDCLIWAIG--REPNTD 268 (450)
T ss_pred HHHHHHHCCcEE--ECCCEEEEEEEcCC-ceEEEEEcCC-------cE-EEeCEEEEeeC--CCcCCC
Confidence 777777778665 89999999986542 3356666544 56 89999999999 556544
No 211
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=5.3e-07 Score=84.57 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
+.||+|||+|.+|++||..+++.|.+|+|+|+....+|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 45999999999999999999999999999998876543
No 212
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.9e-07 Score=85.27 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
+||+|||+|.+|++||..+++.|.+|+|+|+....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999997643
No 213
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=5.7e-07 Score=82.29 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|++.|.+|+++|+.+.+. + .+ .+++...
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l----------------------~---------~~--d~~~~~~ 218 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL----------------------P---------NE--DAEVSKE 218 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------C---------cc--CHHHHHH
Confidence 4689999999999999999999999999999866421 0 00 1346667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|++++.++ +.+.+.+...++ ...+ +.+|.||+|+| ..|+..
T Consensus 219 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g---~~~~-i~~D~vi~a~G--~~pn~~ 276 (466)
T PRK07818 219 IAKQYKKLGVKI--LTGTKVESIDDNG--SKVTVTVSKKDG---KAQE-LEADKVLQAIG--FAPRVE 276 (466)
T ss_pred HHHHHHHCCCEE--EECCEEEEEEEeC--CeEEEEEEecCC---CeEE-EEeCEEEECcC--cccCCC
Confidence 777777778666 8999999997643 445555541111 1146 89999999999 556543
No 214
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.71 E-value=2.3e-07 Score=84.79 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=76.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ..+++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~~-----------~d~~~~~~ 221 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL----------------------SF-----------LDDEISDA 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC----------------------Cc-----------CCHHHHHH
Confidence 5789999999999999999999999999999876431 00 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ ++++.|+.++.++ +.+.+++.++ .+ +.+|.|++|+| ..|+..
T Consensus 222 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~vi~a~G--~~p~~~ 275 (461)
T PRK05249 222 LSYHLRDSGVTI--RHNEEVEKVEGGD--DGVIVHLKSG-------KK-IKADCLLYANG--RTGNTD 275 (461)
T ss_pred HHHHHHHcCCEE--EECCEEEEEEEeC--CeEEEEECCC-------CE-EEeCEEEEeec--CCcccc
Confidence 777777777665 8899999997654 4566665443 46 89999999999 555543
No 215
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.71 E-value=7.8e-07 Score=81.55 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=76.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ..+++...
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~---------~--~d~~~~~~ 229 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL----------------------A---------A--ADEQVAKE 229 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC----------------------C---------c--CCHHHHHH
Confidence 4699999999999999999999999999999876431 0 0 01356666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ +.+++|+.++.++ +...+...++.+ +..+ +.+|.|++|+| ..|+.+
T Consensus 230 ~~~~l~~~gi~i--~~~~~v~~i~~~~--~~v~v~~~~~~g---~~~~-i~~D~vl~a~G--~~p~~~ 287 (475)
T PRK06327 230 AAKAFTKQGLDI--HLGVKIGEIKTGG--KGVSVAYTDADG---EAQT-LEVDKLIVSIG--RVPNTD 287 (475)
T ss_pred HHHHHHHcCcEE--EeCcEEEEEEEcC--CEEEEEEEeCCC---ceeE-EEcCEEEEccC--CccCCC
Confidence 666666777655 8999999998654 345555544321 2246 89999999999 666654
No 216
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=4.9e-07 Score=84.44 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=34.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 357999999999999999999999999999999865443
No 217
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.69 E-value=2.6e-07 Score=83.35 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 3899999999999999999999999999999754
No 218
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.69 E-value=3.4e-07 Score=84.13 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=78.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc--CCCCCCceE--Eec-----------------cc-----
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW--KKYSYDRLR--LHL-----------------AK----- 60 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w--~~~~~~~~~--~~~-----------------~~----- 60 (301)
.+||+|||+|.+|++||..+++.|. |+|+|+.+..+|.- ....+.... .+. +.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 3699999999999999999999997 99999987554421 110000000 000 00
Q ss_pred ---------ccccCCCCCCCCC--------------CC-----CCCCHHHHHHHHHHHHHH-hCCCceeeeCcEEEEEEE
Q 022182 61 ---------QFCQLPHLPFPSS--------------YP-----MFVSRAQFIEHLDHYVSH-FNIGPSIRYQRSVESASY 111 (301)
Q Consensus 61 ---------~~~~~~~~~~~~~--------------~~-----~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~V~~i~~ 111 (301)
.+..+ ..+|... ++ ...++..+...+.+.+++ .++.+ +.++.++.+..
T Consensus 81 ~~~~~~~i~~L~~~-Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i--~~~~~v~~l~~ 157 (488)
T TIGR00551 81 VSDARSAVQWLVDQ-GVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRI--IEGENALDLLI 157 (488)
T ss_pred HHhHHHHHHHHHHc-CCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEE--EECeEeeeeec
Confidence 00000 0111100 00 011456777788877776 46555 89999999876
Q ss_pred cCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 112 DEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 112 ~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
++ +....+...+.. .... +.++.||+|||.++.
T Consensus 158 ~~-g~v~Gv~~~~~~----~~~~-i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 158 ET-GRVVGVWVWNRE----TVET-CHADAVVLATGGAGK 190 (488)
T ss_pred cC-CEEEEEEEEECC----cEEE-EEcCEEEECCCcccC
Confidence 43 222324444321 1246 899999999997664
No 219
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.69 E-value=3.4e-07 Score=85.78 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=36.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...+||+|||+|++|+++|..++++|.+|+|+|+....||
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 4478999999999999999999999999999999987765
No 220
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.68 E-value=7.7e-07 Score=83.36 Aligned_cols=39 Identities=21% Similarity=0.507 Sum_probs=36.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|+++|..+++.|.+|+|+|+....||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 357999999999999999999999999999999987776
No 221
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.67 E-value=5.4e-07 Score=84.42 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=32.6
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
||+|||+|.+|++||..+++.|.+|+|+|+....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 79999999999999999999999999999987554
No 222
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=9.9e-07 Score=80.76 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=36.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhC----CCCeEEEecCCCCCcccC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK 47 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~~~~gg~w~ 47 (301)
.++++|||||++||++|..|.+. |.+|+|+|+.+.+||...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 57999999999999999999985 689999999999998543
No 223
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.67 E-value=4.2e-07 Score=82.16 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=33.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+. .|.+|+|+|+.+..+|
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 3579999999999999999984 7999999999887665
No 224
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.65 E-value=5.2e-07 Score=80.51 Aligned_cols=40 Identities=18% Similarity=0.452 Sum_probs=36.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCCcccC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIWK 47 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~gg~w~ 47 (301)
++|+|||||++||++|++|.+.+ .+++|||+++++||...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 47999999999999999999999 89999999999998443
No 225
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.65 E-value=9e-07 Score=89.08 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999888764
No 226
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=9.4e-07 Score=83.46 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
..+||+|||+|.||++||..+++.|.+|+|+|+....+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 35799999999999999999999999999999987554
No 227
>PRK07846 mycothione reductase; Reviewed
Probab=98.65 E-value=9.5e-07 Score=80.38 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~-----------~d~~~~~~ 212 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL----------------------RH-----------LDDDISER 212 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc----------------------cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01234444
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+.. +.++ .+++++++++++.++ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 213 l~~l~-~~~v--~i~~~~~v~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 265 (451)
T PRK07846 213 FTELA-SKRW--DVRLGRNVVGVSQDG--SGVTLRLDDG-------ST-VEADVLLVATG--RVPNGD 265 (451)
T ss_pred HHHHH-hcCe--EEEeCCEEEEEEEcC--CEEEEEECCC-------cE-eecCEEEEEEC--CccCcc
Confidence 54433 2344 448899999997644 3455655443 56 89999999999 556544
No 228
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.64 E-value=4.7e-08 Score=88.66 Aligned_cols=60 Identities=20% Similarity=0.244 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
+.++..+-++|.+.+.+.|++. +.+ .|+.+..++++....|++.++ .+ +.+|.+|-|||.
T Consensus 150 hlDR~~fd~~L~~~A~~~Gv~~--~~g-~V~~v~~~~~g~i~~v~~~~g-------~~-i~ad~~IDASG~ 209 (454)
T PF04820_consen 150 HLDRAKFDQFLRRHAEERGVEV--IEG-TVVDVELDEDGRITAVRLDDG-------RT-IEADFFIDASGR 209 (454)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EE--EET--EEEEEE-TTSEEEEEEETTS-------EE-EEESEEEE-SGG
T ss_pred EEeHHHHHHHHHHHHhcCCCEE--EeC-EEEEEEEcCCCCEEEEEECCC-------CE-EEEeEEEECCCc
Confidence 3588999999999999999875 544 588887776333345666554 67 999999999995
No 229
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.64 E-value=4.8e-07 Score=82.30 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ..+++.+.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l----------------------~---------~--~d~~~~~~ 212 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL----------------------R---------G--FDDDMRAL 212 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC----------------------c---------c--cCHHHHHH
Confidence 4689999999999999999999999999999876421 0 0 01356666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.+ +.+++|+.++..+ +...+.+.++ .+ +.+|.||+|+| ..|+.
T Consensus 213 l~~~l~~~gV~i--~~~~~v~~i~~~~--~~~~v~~~~g-------~~-i~~D~viva~G--~~pn~ 265 (446)
T TIGR01424 213 LARNMEGRGIRI--HPQTSLTSITKTD--DGLKVTLSHG-------EE-IVADVVLFATG--RSPNT 265 (446)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEEcC--CeEEEEEcCC-------cE-eecCEEEEeeC--CCcCC
Confidence 777777778665 8899999997644 3455665543 56 89999999999 55554
No 230
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.63 E-value=3e-08 Score=67.57 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=40.2
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEeehhhHHHHHHHhh
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLSREMVYLGVVLFK 236 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~ 236 (301)
+++|||+|.+|+|+|..|++.|.+||+++|++ +++|..+.++...+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~-~~~~~~~~~~~~~~~~ 48 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD-RLLPGFDPDAAKILEE 48 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS-SSSTTSSHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc-hhhhhcCHHHHHHHHH
Confidence 68999999999999999999999999999999 5666666665554433
No 231
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=4.6e-08 Score=89.65 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=39.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKY 49 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~ 49 (301)
.+||||||||++||+||..|+++|++|+|+||+..+||..+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~ 45 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF 45 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEE
Confidence 4799999999999999999999999999999999999955543
No 232
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.63 E-value=1.9e-06 Score=80.88 Aligned_cols=40 Identities=18% Similarity=0.545 Sum_probs=36.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
..+||+|||+|.+|+++|..+.+.|.+|+|+|+....||.
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 4689999999999999999999999999999998877763
No 233
>PLN02815 L-aspartate oxidase
Probab=98.63 E-value=7.8e-07 Score=83.21 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
.+||+|||+|.+|++||..+++.| +|+|+|+....||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 579999999999999999999999 9999999887665
No 234
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=5.3e-07 Score=84.49 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg 44 (301)
.+||+|||+|.+|++||..+++. |.+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 46999999999999999999987 489999999876443
No 235
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.63 E-value=1.5e-06 Score=79.51 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=73.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . ..+++...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------------------~-----------~d~~~~~~ 215 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP----------------------L-----------EDPEVSKQ 215 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc----------------------c-----------hhHHHHHH
Confidence 56899999999999999999999999999998765320 0 01345666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++. +++ ++++++++++.++. ...+++..++. ..+ +.+|.|++|+| ..|+..
T Consensus 216 ~~~~l~~~-I~i--~~~~~v~~i~~~~~-~~v~~~~~~~~-----~~~-i~~D~vi~a~G--~~p~~~ 271 (460)
T PRK06292 216 AQKILSKE-FKI--KLGAKVTSVEKSGD-EKVEELEKGGK-----TET-IEADYVLVATG--RRPNTD 271 (460)
T ss_pred HHHHHhhc-cEE--EcCCEEEEEEEcCC-ceEEEEEcCCc-----eEE-EEeCEEEEccC--CccCCC
Confidence 66666655 554 88999999976442 23334332221 156 89999999999 666654
No 236
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.63 E-value=2.1e-06 Score=79.39 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=37.4
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
|+.-...+||+|||+| +|+++|.++++.|.+|+|+|+....||
T Consensus 1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 4444457899999999 999999999999999999999887554
No 237
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.62 E-value=8.3e-07 Score=78.24 Aligned_cols=65 Identities=20% Similarity=0.399 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCC
Q 022182 81 AQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (301)
Q Consensus 81 ~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p 151 (301)
..+.+.+-+++.+. +. .+.++++|+.|.+.. ++.|.|.+.+..++ ...+ +.+++|++..|..+.+
T Consensus 181 G~LTr~l~~~l~~~~~~--~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~--~~~~-v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGF--ELHLNHEVTDIKRNG-DGRWEVKVKDLKTG--EKRE-VRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHhCCCc--EEEecCEeCeeEECC-CCCEEEEEEecCCC--CeEE-EECCEEEECCchHhHH
Confidence 34444444444443 54 449999999999876 46799998764332 2367 9999999999976644
No 238
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.62 E-value=2.5e-07 Score=82.53 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
.++||+|||||++|+++|++|++.|.+|+++|+....+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46799999999999999999999999999999887544
No 239
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=9.4e-07 Score=80.82 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=75.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
.+.+|+|||+|+.|+.+|..|.+.|.+|+++|+.+.+. + . ...++.+
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il----------------------~---------~--~d~~~~~ 219 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC----------------------P---------G--TDTETAK 219 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC----------------------C---------C--CCHHHHH
Confidence 35789999999999999999999999999999876431 0 0 0124556
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
.+.+..++.++++ +++++|+++..++ +.+.+.+....++ .... +.+|.|++|+| ..|+.
T Consensus 220 ~l~~~l~~~gV~i--~~~~~V~~i~~~~--~~v~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~pn~ 278 (466)
T PRK06115 220 TLQKALTKQGMKF--KLGSKVTGATAGA--DGVSLTLEPAAGG--AAET-LQADYVLVAIG--RRPYT 278 (466)
T ss_pred HHHHHHHhcCCEE--EECcEEEEEEEcC--CeEEEEEEEcCCC--ceeE-EEeCEEEEccC--Ccccc
Confidence 6777777777665 8999999997643 3455544321110 1156 89999999999 55554
No 240
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.61 E-value=2.4e-06 Score=79.70 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=36.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
...+||||||+| +|+++|..+++.|.+|+|+|+.+.+||+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 346899999999 8999999999999999999999888874
No 241
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.60 E-value=1.4e-06 Score=74.53 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=110.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
-+++++|||||..||..+.-..++|.+|+++|-.+.+|+... .++..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD---------------------------------~Eisk 256 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD---------------------------------GEISK 256 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------HHHHH
Confidence 367999999999999999999999999999998888774421 25666
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCC--C--Cccc
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDI--R--GLCS 161 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~--~--g~~~ 161 (301)
.++......++.+ .++++|+.+..+.++ ...+++.+..++ +.++ +.+|.+++|+| .+|+.-.+ . |++.
T Consensus 257 ~~qr~L~kQgikF--~l~tkv~~a~~~~dg-~v~i~ve~ak~~--k~~t-le~DvlLVsiG--RrP~t~GLgle~iGi~~ 328 (506)
T KOG1335|consen 257 AFQRVLQKQGIKF--KLGTKVTSATRNGDG-PVEIEVENAKTG--KKET-LECDVLLVSIG--RRPFTEGLGLEKIGIEL 328 (506)
T ss_pred HHHHHHHhcCcee--EeccEEEEeeccCCC-ceEEEEEecCCC--ceeE-EEeeEEEEEcc--CcccccCCChhhccccc
Confidence 7777777778777 999999999987743 677777765444 3467 99999999999 66765432 1 2211
Q ss_pred cccCCCCCccEEeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhccC
Q 022182 162 FCSSATGTGEVIHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANHAA 210 (301)
Q Consensus 162 ~~~~~~~~g~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~g~ 210 (301)
...+++..-.++.. +-.++-.||--.-|--+|...-+.|.
T Consensus 329 -----D~r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 329 -----DKRGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred -----ccccceeccccccc----cCCceEEecccCCcchhhhhhhhhch
Confidence 01444443333321 23578899988888777766655553
No 242
>PLN02507 glutathione reductase
Probab=98.60 E-value=8e-07 Score=81.81 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=75.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||+|+.|+.+|..|.+.|.+|+|+++.+.+- + . ..+++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l----------------------~---------~--~d~~~~~~ 249 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL----------------------R---------G--FDDEMRAV 249 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC----------------------c---------c--cCHHHHHH
Confidence 4689999999999999999999999999999876421 0 0 01356677
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +++++|++++..+ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 250 l~~~l~~~GI~i--~~~~~V~~i~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 303 (499)
T PLN02507 250 VARNLEGRGINL--HPRTNLTQLTKTE--GGIKVITDHG-------EE-FVADVVLFATG--RAPNTK 303 (499)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEeC--CeEEEEECCC-------cE-EEcCEEEEeec--CCCCCC
Confidence 777777778665 8999999997643 4455655433 56 89999999999 555543
No 243
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.60 E-value=1.5e-06 Score=79.55 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY 42 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~ 42 (301)
..+||+|||||+.|+++|++|++. |.+|+|+||...+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 458999999999999999999985 7899999998654
No 244
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=2.7e-06 Score=79.87 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++. .+|+|+|+....++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 357999999999999999999976 89999999865443
No 245
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.58 E-value=8.3e-07 Score=83.18 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++. |.+|+|+|+....++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 457999999999999999999987 479999999876554
No 246
>PTZ00367 squalene epoxidase; Provisional
Probab=98.58 E-value=7.4e-07 Score=82.78 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 36799999999999999999999999999999875
No 247
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.58 E-value=8.8e-07 Score=80.98 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=76.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|..|+.+|..|++.|.+|+++++.+.+.. . ...++..+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-------------------------------~--~d~~~~~~ 223 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-------------------------------G--EDADAAEV 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------C--CCHHHHHH
Confidence 46899999999999999999999999999998764310 0 01245667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ ..++++++++.++ +.+.+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 224 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-l~~D~vl~a~G--~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTV--LKRSRAESVERTG--DGVVVTLTDG-------RT-VEGSHALMAVG--SVPNTA 277 (466)
T ss_pred HHHHHHHCCcEE--EcCCEEEEEEEeC--CEEEEEECCC-------cE-EEecEEEEeec--CCcCCC
Confidence 777777778665 8899999997644 4455665543 56 89999999999 556543
No 248
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.58 E-value=2e-06 Score=78.32 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. ..+++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll----------------------~~-----------~d~~~~~~ 215 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL----------------------RH-----------LDEDISDR 215 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc----------------------cc-----------cCHHHHHH
Confidence 4689999999999999999999999999999876421 00 01234444
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..+ .++ .++++++|++++.++ +...+++.++ .+ +.+|.|++|+| ..|+..
T Consensus 216 l~~~~~-~gI--~i~~~~~V~~i~~~~--~~v~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 268 (452)
T TIGR03452 216 FTEIAK-KKW--DIRLGRNVTAVEQDG--DGVTLTLDDG-------ST-VTADVLLVATG--RVPNGD 268 (452)
T ss_pred HHHHHh-cCC--EEEeCCEEEEEEEcC--CeEEEEEcCC-------CE-EEcCEEEEeec--cCcCCC
Confidence 544333 344 448899999997654 4455665443 46 89999999999 556543
No 249
>PRK14727 putative mercuric reductase; Provisional
Probab=98.58 E-value=2.8e-06 Score=77.94 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++...+. . ..+++.+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-----------------------~-----------~d~~~~~~ 233 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-----------------------R-----------EDPLLGET 233 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-----------------------c-----------chHHHHHH
Confidence 4689999999999999999999999999998643110 0 11356677
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.+ +++++|+.++.++ +.+.+...+ .+ +.+|.|++|+| ..|+.
T Consensus 234 l~~~L~~~GV~i--~~~~~V~~i~~~~--~~~~v~~~~--------g~-i~aD~VlvA~G--~~pn~ 285 (479)
T PRK14727 234 LTACFEKEGIEV--LNNTQASLVEHDD--NGFVLTTGH--------GE-LRAEKLLISTG--RHANT 285 (479)
T ss_pred HHHHHHhCCCEE--EcCcEEEEEEEeC--CEEEEEEcC--------Ce-EEeCEEEEccC--CCCCc
Confidence 777777778665 8899999987654 445555433 35 78999999999 55544
No 250
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.58 E-value=1.1e-06 Score=79.89 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=75.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||||+.|+.+|..|++.|.+|+++++.+.+. + . ..+++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il----------------------~---------~--~d~~~~~~ 212 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL----------------------R---------S--FDSMISET 212 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC----------------------c---------c--cCHHHHHH
Confidence 4689999999999999999999999999999876431 0 0 01246666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..+..++.. +.++.++.++.+. .+...+.+.++. .. +.+|.|++|+| ..|+..
T Consensus 213 ~~~~l~~~gI~i--~~~~~v~~i~~~~-~~~~~v~~~~g~------~~-i~~D~vi~a~G--~~pn~~ 268 (450)
T TIGR01421 213 ITEEYEKEGINV--HKLSKPVKVEKTV-EGKLVIHFEDGK------SI-DDVDELIWAIG--RKPNTK 268 (450)
T ss_pred HHHHHHHcCCEE--EcCCEEEEEEEeC-CceEEEEECCCc------EE-EEcCEEEEeeC--CCcCcc
Confidence 777777778665 8999999997643 233455554431 46 89999999999 555543
No 251
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=7.5e-08 Score=87.64 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..++|+|||||++||+||++|...|++|+|+|.++++||
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457999999999999999999999999999999999998
No 252
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.57 E-value=3.3e-06 Score=78.82 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=38.6
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
|......+||+|||+|++|+++|..+++.|.+|+|+|+...+||
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 44445578999999999999999999999999999999887765
No 253
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.57 E-value=2.2e-07 Score=89.68 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=71.3
Q ss_pred CcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCC---C-cc-cCCCCCCceEEecc-------cccccC-------C
Q 022182 8 VEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCY---A-SI-WKKYSYDRLRLHLA-------KQFCQL-------P 66 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~---g-g~-w~~~~~~~~~~~~~-------~~~~~~-------~ 66 (301)
++|+||||||+|+++|..|++. |++|+|+|+++.. | |. ...+....+....+ ..+..+ .
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFK 80 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEEC
Confidence 4899999999999999999998 8999999998853 2 11 00000000000000 000000 0
Q ss_pred CCCCCCCCC--CCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEe
Q 022182 67 HLPFPSSYP--MFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVA 144 (301)
Q Consensus 67 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlA 144 (301)
......... ....+.++.+.|.+.+.+.++.+ +++++++.++. .. ..+|.||.|
T Consensus 81 g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i--~~g~~v~~i~~---------------------~~-~~~D~VVgA 136 (765)
T PRK08255 81 GRRIRSGGHGFAGIGRKRLLNILQARCEELGVKL--VFETEVPDDQA---------------------LA-ADADLVIAS 136 (765)
T ss_pred CEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEE--EeCCccCchhh---------------------hh-cCCCEEEEc
Confidence 000000001 12578999999999999888655 88887765421 12 467999999
Q ss_pred cCCCC
Q 022182 145 SGETT 149 (301)
Q Consensus 145 tG~~~ 149 (301)
+|.+|
T Consensus 137 DG~~S 141 (765)
T PRK08255 137 DGLNS 141 (765)
T ss_pred CCCCH
Confidence 99766
No 254
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.56 E-value=8.1e-07 Score=80.84 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.+-. . . ..+++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------------------------~---~--~~~~~~~~ 196 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP---------------------------D---S--FDKEITDV 196 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc---------------------------h---h--cCHHHHHH
Confidence 46899999999999999999999999999987654210 0 0 01467778
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
+.+..++.++++ ++++++++++.++ ..+.+.+.+ .+ +.+|.+|+|+| ..|+
T Consensus 197 l~~~l~~~gI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~d~vi~a~G--~~p~ 247 (444)
T PRK09564 197 MEEELRENGVEL--HLNEFVKSLIGED--KVEGVVTDK--------GE-YEADVVIVATG--VKPN 247 (444)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEecCC--cEEEEEeCC--------CE-EEcCEEEECcC--CCcC
Confidence 888888888665 8899999996432 333444332 46 89999999999 4454
No 255
>PRK07208 hypothetical protein; Provisional
Probab=98.56 E-value=2.1e-07 Score=85.45 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=40.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSY 51 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~ 51 (301)
..+||+|||||++||++|..|.++|++|+|+|+++.+||.+....+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~ 48 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY 48 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc
Confidence 3569999999999999999999999999999999999997655433
No 256
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.56 E-value=1.7e-06 Score=79.26 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=73.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||||+.|+.+|..|.+.|.+|+++|+.+.+. +. ..+++.++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il----------------------~~-----------~d~~~~~~ 220 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI----------------------PA-----------ADKDIVKV 220 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC----------------------Cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999877531 00 01245555
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++. +. +.++++|+.++..+ +...+.+.++.+ ...+ +.+|.||+|+| ..|+..
T Consensus 221 ~~~~l~~~-v~--i~~~~~v~~i~~~~--~~~~v~~~~~~~---~~~~-i~~D~vi~a~G--~~pn~~ 277 (471)
T PRK06467 221 FTKRIKKQ-FN--IMLETKVTAVEAKE--DGIYVTMEGKKA---PAEP-QRYDAVLVAVG--RVPNGK 277 (471)
T ss_pred HHHHHhhc-eE--EEcCCEEEEEEEcC--CEEEEEEEeCCC---cceE-EEeCEEEEeec--ccccCC
Confidence 55555544 44 48899999987654 445565544321 1156 89999999999 556544
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.56 E-value=2.2e-06 Score=80.53 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
|+|||+|.+|++||..+++.|.+|+|+|+...+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999999999999999998743
No 258
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=2.4e-06 Score=80.23 Aligned_cols=39 Identities=23% Similarity=0.421 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCC---CCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQS---IPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g---~~v~vie~~~~~gg 44 (301)
..+||+|||+|.+|++||..+++.| .+|+|+|+....++
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 3579999999999999999999998 89999999876554
No 259
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.54 E-value=2.2e-06 Score=79.67 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...+||+|||+|.+|++||..+++. .+|+|+|+....+|
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 4467999999999999999999886 89999999886655
No 260
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.54 E-value=3.2e-06 Score=79.15 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYAS 44 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~gg 44 (301)
.+||+|||+|.+|++||..+++. |.+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 47999999999999999999987 579999999876554
No 261
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.54 E-value=7.9e-07 Score=82.68 Aligned_cols=39 Identities=26% Similarity=0.553 Sum_probs=34.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
+..+||+|||+|.||++||..+. .|.+|+|+|+.+..||
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 34679999999999999999996 4999999999886655
No 262
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.53 E-value=1.1e-06 Score=79.56 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||+|++|+.+|..|++.|.+|+++++.+.+.. +. ...++.++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~------------------------------~~--~~~~~~~~ 184 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILN------------------------------KL--FDEEMNQI 184 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCc------------------------------cc--cCHHHHHH
Confidence 46899999999999999999999999999998764310 00 01356677
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.+++. .+++.+.+++.++ . . +.+.++ .+ +.+|.||+|+| ..|..
T Consensus 185 ~~~~l~~~gV~v--~~~~~v~~i~~~~--~-~-v~~~~g-------~~-i~~D~vi~a~G--~~p~~ 235 (427)
T TIGR03385 185 VEEELKKHEINL--RLNEEVDSIEGEE--R-V-KVFTSG-------GV-YQADMVILATG--IKPNS 235 (427)
T ss_pred HHHHHHHcCCEE--EeCCEEEEEecCC--C-E-EEEcCC-------CE-EEeCEEEECCC--ccCCH
Confidence 777778888766 8899999997543 2 2 344443 56 89999999999 55543
No 263
>PRK14694 putative mercuric reductase; Provisional
Probab=98.53 E-value=1.6e-06 Score=79.47 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ..+++.+.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-----------------------~-----------~~~~~~~~ 223 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-----------------------Q-----------EDPAVGEA 223 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-----------------------C-----------CCHHHHHH
Confidence 4689999999999999999999999999998643210 0 11356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ ++++.++.++.++ +.+.+.+.+ .+ +.+|.||+|+| ..|+..
T Consensus 224 l~~~l~~~GI~v--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 276 (468)
T PRK14694 224 IEAAFRREGIEV--LKQTQASEVDYNG--REFILETNA--------GT-LRAEQLLVATG--RTPNTE 276 (468)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEECC--------CE-EEeCEEEEccC--CCCCcC
Confidence 777777778666 8899999987644 444454432 35 89999999999 555543
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.52 E-value=7e-07 Score=81.00 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... ..+++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~---------------------------------~d~~~~~~ 194 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL---------------------------------MDADMNQP 194 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh---------------------------------cCHHHHHH
Confidence 468999999999999999999999999999987643200 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.. +++++|++++. . .+++.++ .. +.+|.|++|+| ..|+.
T Consensus 195 l~~~l~~~gI~i--~~~~~v~~i~~----~--~v~~~~g-------~~-~~~D~vl~a~G--~~pn~ 243 (438)
T PRK13512 195 ILDELDKREIPY--RLNEEIDAING----N--EVTFKSG-------KV-EHYDMIIEGVG--THPNS 243 (438)
T ss_pred HHHHHHhcCCEE--EECCeEEEEeC----C--EEEECCC-------CE-EEeCEEEECcC--CCcCh
Confidence 777777778665 88999998853 1 3555543 46 88999999999 55553
No 265
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=1.5e-06 Score=78.93 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + .+ ..++.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l----------------------~---------~~--~~~~~~~ 204 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL----------------------P---------RE--DRDIADN 204 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC----------------------C---------Cc--CHHHHHH
Confidence 4689999999999999999999999999999876421 0 00 1356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.+ ++++++++++.++ +.+.+...+ .+ +.+|.|++|+| ..|+.
T Consensus 205 l~~~l~~~gV~v--~~~~~v~~i~~~~--~~v~v~~~~--------g~-i~~D~vl~a~G--~~pn~ 256 (441)
T PRK08010 205 IATILRDQGVDI--ILNAHVERISHHE--NQVQVHSEH--------AQ-LAVDALLIASG--RQPAT 256 (441)
T ss_pred HHHHHHhCCCEE--EeCCEEEEEEEcC--CEEEEEEcC--------Ce-EEeCEEEEeec--CCcCC
Confidence 777777778666 8899999997654 445554432 35 78999999999 55554
No 266
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.51 E-value=4.6e-06 Score=77.88 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
..+||+|||+|.+|+++|..+++.|.+|+|+|+....||+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 3689999999999999999999999999999998776663
No 267
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=2.7e-07 Score=82.34 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC----------CCcccCCCC------CCceE-EecccccccCCCC-
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC----------YASIWKKYS------YDRLR-LHLAKQFCQLPHL- 68 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~----------~gg~w~~~~------~~~~~-~~~~~~~~~~~~~- 68 (301)
.+||+|||||+||+.||...++.|.+++++-.+.. +||.-.... ..++. ........++..+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999998876542 222211100 00000 0000001111111
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEE
Q 022182 69 ----PFPSSYPMFVSRAQFIEHLDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVV 143 (301)
Q Consensus 69 ----~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVl 143 (301)
|-........++..+.++++...+.. ++. .+...|+.+..++....+-|.+..| .. +.|+.||+
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~---l~q~~v~dli~e~~~~v~GV~t~~G-------~~-~~a~aVVl 152 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLH---LLQGEVEDLIVEEGQRVVGVVTADG-------PE-FHAKAVVL 152 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCce---ehHhhhHHHhhcCCCeEEEEEeCCC-------Ce-eecCEEEE
Confidence 11111122334455555556555544 332 3555677666544223566777766 67 99999999
Q ss_pred ecCCC
Q 022182 144 ASGET 148 (301)
Q Consensus 144 AtG~~ 148 (301)
+||.+
T Consensus 153 TTGTF 157 (621)
T COG0445 153 TTGTF 157 (621)
T ss_pred eeccc
Confidence 99954
No 268
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.50 E-value=2e-06 Score=79.37 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
.+||+|||+|.||++||..+++ |.+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCC
Confidence 4799999999999999999976 899999999886554
No 269
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.50 E-value=2.9e-06 Score=77.85 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=74.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||||+.|+.+|..|++.|.+|+++++...+ +. ..+++.++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~-----------~d~~~~~~ 225 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-----------------------RG-----------FDQDCANK 225 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc-----------------------cc-----------cCHHHHHH
Confidence 458999999999999999999999999999864210 00 01356677
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..+..++++ ++++.++.+...+ +...|++.++.. ..+ +.+|.|++|+| ..|+..
T Consensus 226 l~~~L~~~gV~i--~~~~~v~~v~~~~--~~~~v~~~~~~~----~~~-i~~D~vl~a~G--~~pn~~ 282 (484)
T TIGR01438 226 VGEHMEEHGVKF--KRQFVPIKVEQIE--AKVKVTFTDSTN----GIE-EEYDTVLLAIG--RDACTR 282 (484)
T ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEecCCc----ceE-EEeCEEEEEec--CCcCCC
Confidence 777777778766 8888888887644 344555544321 146 89999999999 555543
No 270
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.49 E-value=5.3e-06 Score=77.82 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=36.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
.+||+|||+|++|+++|..+++.|.+|+|+|+...+||..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999988777744
No 271
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.48 E-value=1.7e-06 Score=74.98 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
.+|+|||||.+|+++|..|.++|++|+|+|++..+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 48999999999999999999999999999987654
No 272
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.47 E-value=1.5e-06 Score=84.46 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=75.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||||+.|+.+|..|.+.|.+|+|+++.+.+-. .. -.++..+.
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------~~-ld~~~~~~ 192 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------EQ-LDQMGGEQ 192 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------------------hh-cCHHHHHH
Confidence 46899999999999999999999999999998764210 00 01345667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.+ ++++.++++..+.......+.+.++ .+ +.+|.||+|+| .+|+.
T Consensus 193 l~~~L~~~GV~v--~~~~~v~~I~~~~~~~~~~v~~~dG-------~~-i~~D~Vv~A~G--~rPn~ 247 (847)
T PRK14989 193 LRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMRFADG-------SE-LEVDFIVFSTG--IRPQD 247 (847)
T ss_pred HHHHHHHCCCEE--EcCCeEEEEEecCCCceEEEEECCC-------CE-EEcCEEEECCC--cccCc
Confidence 777778888766 8999999997543223445566554 56 89999999999 55553
No 273
>PTZ00058 glutathione reductase; Provisional
Probab=98.47 E-value=2.5e-06 Score=79.27 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. + .+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il----------------------~~---------~--d~~i~~~ 283 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL----------------------RK---------F--DETIINE 283 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc----------------------cc---------C--CHHHHHH
Confidence 5789999999999999999999999999999876421 00 0 1356666
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ ++++.+.+++.++. +...+...++. .+ +.+|.|++|+| ..|+..
T Consensus 284 l~~~L~~~GV~i--~~~~~V~~I~~~~~-~~v~v~~~~~~------~~-i~aD~VlvA~G--r~Pn~~ 339 (561)
T PTZ00058 284 LENDMKKNNINI--ITHANVEEIEKVKE-KNLTIYLSDGR------KY-EHFDYVIYCVG--RSPNTE 339 (561)
T ss_pred HHHHHHHCCCEE--EeCCEEEEEEecCC-CcEEEEECCCC------EE-EECCEEEECcC--CCCCcc
Confidence 777777778765 89999999976432 23444433221 56 89999999999 555543
No 274
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.47 E-value=2.2e-06 Score=71.70 Aligned_cols=137 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCC--CCc--------eE-Eeccccc---------------
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYS--YDR--------LR-LHLAKQF--------------- 62 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~--~~~--------~~-~~~~~~~--------------- 62 (301)
.|||||+|.+|++++..+...|-.|+++|++..+||...... ..+ +. .++|..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 699999999999999999998878999999999998533210 000 00 0000000
Q ss_pred ---------------------------ccCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHh----CCCceeeeCcEEEE
Q 022182 63 ---------------------------CQLPHLPFPS---SYPMFVSRAQFIEHLDHYVSHF----NIGPSIRYQRSVES 108 (301)
Q Consensus 63 ---------------------------~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~----~~~~~i~~~~~V~~ 108 (301)
..+.....|. .....|+..++...+....+++ .-...|..+++|+.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv~ 170 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVVD 170 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceeee
Confidence 0000000110 1112345566666555444433 22244588999999
Q ss_pred EEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 109 ASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 109 i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
|..+. +...-|+..+.++. ... +.++.||+|||.++.
T Consensus 171 il~n~-gkVsgVeymd~sge---k~~-~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 171 ILRNN-GKVSGVEYMDASGE---KSK-IIGDAVVLATGGFGY 207 (477)
T ss_pred eecCC-CeEEEEEEEcCCCC---ccc-eecCceEEecCCcCc
Confidence 98543 44555666654442 255 789999999997664
No 275
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.47 E-value=3.3e-06 Score=75.86 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=77.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||+|+.|+.+|..|+++|++|+++|..+.+++... . +++.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~-------------------------------~-~~~~~~ 183 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL-------------------------------D-PEVAEE 183 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh-------------------------------h-HHHHHH
Confidence 36999999999999999999999999999999987653311 0 357778
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEE-EEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWN-VKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~-V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
+.+..+.+++.. +++..+..++......... +....+ .. +.+|.+++++| .+|+
T Consensus 184 ~~~~l~~~gi~~--~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~-~~~d~~~~~~g--~~p~ 238 (415)
T COG0446 184 LAELLEKYGVEL--LLGTKVVGVEGKGNTLVVERVVGIDG-------EE-IKADLVIIGPG--ERPN 238 (415)
T ss_pred HHHHHHHCCcEE--EeCCceEEEEcccCcceeeEEEEeCC-------cE-EEeeEEEEeec--cccc
Confidence 888888888655 8999999998755221111 233332 56 89999999999 5553
No 276
>PRK13748 putative mercuric reductase; Provisional
Probab=98.46 E-value=2.6e-06 Score=79.86 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|.+.|.+|+++++...+. . ..+++...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--------------------------------~--~d~~~~~~ 315 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF--------------------------------R--EDPAIGEA 315 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc--------------------------------c--cCHHHHHH
Confidence 4689999999999999999999999999998743210 0 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ ++++.++.++.++ +.+.+.+.+ .+ +.+|.|++|+| ..|+..
T Consensus 316 l~~~l~~~gI~i--~~~~~v~~i~~~~--~~~~v~~~~--------~~-i~~D~vi~a~G--~~pn~~ 368 (561)
T PRK13748 316 VTAAFRAEGIEV--LEHTQASQVAHVD--GEFVLTTGH--------GE-LRADKLLVATG--RAPNTR 368 (561)
T ss_pred HHHHHHHCCCEE--EcCCEEEEEEecC--CEEEEEecC--------Ce-EEeCEEEEccC--CCcCCC
Confidence 777777778666 8899999987643 445554433 35 89999999999 556543
No 277
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.45 E-value=3.2e-06 Score=77.51 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=73.4
Q ss_pred CCcEEEECCChHHHHHHHHHhh---CCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSL---QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQF 83 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~---~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (301)
+.+++|||||+.|+.+|..+.. .|.+|+|+++.+.+. +. ..+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il----------------------~~-----------~d~~~ 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL----------------------RG-----------FDSTL 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc----------------------cc-----------cCHHH
Confidence 4689999999999999976654 499999999876531 00 01356
Q ss_pred HHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 84 IEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 84 ~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
.+.+.+..++.++.+ ++++.++.+..+++ +...+.+.++ .+ +.+|.|++|+| ..|+.
T Consensus 234 ~~~l~~~L~~~GI~i--~~~~~v~~i~~~~~-~~~~v~~~~g-------~~-i~~D~vl~a~G--~~Pn~ 290 (486)
T TIGR01423 234 RKELTKQLRANGINI--MTNENPAKVTLNAD-GSKHVTFESG-------KT-LDVDVVMMAIG--RVPRT 290 (486)
T ss_pred HHHHHHHHHHcCCEE--EcCCEEEEEEEcCC-ceEEEEEcCC-------CE-EEcCEEEEeeC--CCcCc
Confidence 677777777778665 89999999976532 3345555443 46 89999999999 55554
No 278
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.45 E-value=3.4e-07 Score=80.42 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=37.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
..+++|||||++|++||..|+..|++|.++|+++.+||.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 468999999999999999999999999999999999986
No 279
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.45 E-value=3.7e-06 Score=77.47 Aligned_cols=100 Identities=17% Similarity=0.028 Sum_probs=73.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+++|||+|+.|+.+|..|++.|.+|+++++...+ +. ..+++.+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-----------------------~~-----------~d~~~~~~ 227 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-----------------------RG-----------FDRQCSEK 227 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-----------------------cc-----------CCHHHHHH
Confidence 458999999999999999999999999999864211 00 01246667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++.+ +.++.+..+...+ +...+.+.++ .+ +.+|.|++|+| ..|+..
T Consensus 228 l~~~l~~~GV~i--~~~~~v~~v~~~~--~~~~v~~~~g-------~~-i~~D~vl~a~G--~~pn~~ 281 (499)
T PTZ00052 228 VVEYMKEQGTLF--LEGVVPINIEKMD--DKIKVLFSDG-------TT-ELFDTVLYATG--RKPDIK 281 (499)
T ss_pred HHHHHHHcCCEE--EcCCeEEEEEEcC--CeEEEEECCC-------CE-EEcCEEEEeeC--CCCCcc
Confidence 777777778665 8888888887643 3345655443 46 88999999999 555543
No 280
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.43 E-value=3e-07 Score=83.79 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=35.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCCCCccc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENCYASIW 46 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~~gg~w 46 (301)
++|+|||||++||+||+.|.+.| ++|+|+|+++.+||..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKI 41 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceE
Confidence 47999999999999999999987 8999999999999843
No 281
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.43 E-value=7.5e-06 Score=77.72 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+....+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 45799999999999999999999999999999877543
No 282
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.43 E-value=1.8e-06 Score=83.73 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=74.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+-. .. -.+.....
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------------------~~-ld~~~~~~ 187 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------------------KQ-LDQTAGRL 187 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------------------hh-cCHHHHHH
Confidence 46899999999999999999999999999997654210 00 01245566
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.+ ++++.++++..+. ....|.+.++ .+ +.+|.||+|+| .+|+.
T Consensus 188 l~~~l~~~GV~v--~~~~~v~~i~~~~--~~~~v~~~dG-------~~-i~~D~Vi~a~G--~~Pn~ 240 (785)
T TIGR02374 188 LQRELEQKGLTF--LLEKDTVEIVGAT--KADRIRFKDG-------SS-LEADLIVMAAG--IRPND 240 (785)
T ss_pred HHHHHHHcCCEE--EeCCceEEEEcCC--ceEEEEECCC-------CE-EEcCEEEECCC--CCcCc
Confidence 677777788766 8898888886432 3345666654 56 89999999999 55543
No 283
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=1.2e-06 Score=73.37 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=54.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCC--ceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD--RLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
+|++|||||.+|+.+|..|+++|.+|.|+|+++++||.......+ ++..+. +... -.+.+.+.+.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHk------YGpH------IFHT~~~~Vwd 69 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHK------YGPH------IFHTDNKRVWD 69 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEee------ccCc------eeecCchHHHH
Confidence 699999999999999999999999999999999999987654332 222221 0000 01235568888
Q ss_pred HHHHHHHHh
Q 022182 86 HLDHYVSHF 94 (301)
Q Consensus 86 ~l~~~~~~~ 94 (301)
|+..+.+-.
T Consensus 70 yv~~F~e~~ 78 (374)
T COG0562 70 YVNQFTEFN 78 (374)
T ss_pred HHhhhhhhh
Confidence 988887765
No 284
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=98.41 E-value=7.5e-07 Score=76.84 Aligned_cols=177 Identities=14% Similarity=0.190 Sum_probs=95.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCC--------cccCCCCCCceEEecccccccCCCCCCCC----
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA--------SIWKKYSYDRLRLHLAKQFCQLPHLPFPS---- 72 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~g--------g~w~~~~~~~~~~~~~~~~~~~~~~~~~~---- 72 (301)
+.-.+|||+|.+..+++...... +.++.++..++.+. ..|.+... + ..-.+.+-+|..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dp-n-------~~k~lrfkqwsGkeRs 249 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDP-N-------SAKKLRFKQWSGKERS 249 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCC-C-------hhhheeecccCCccce
Confidence 45689999999999888777654 66888887666432 12322100 0 000000011110
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 73 ----SYPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 73 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
-...|.+.+++-. +..-|+. +..+..|..++.++ ..|.+.+| .+ |.||.++||||
T Consensus 250 iffepd~FfvspeDLp~-----~~nGGvA--vl~G~kvvkid~~d----~~V~LnDG-------~~-I~YdkcLIATG-- 308 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPK-----AVNGGVA--VLRGRKVVKIDEED----KKVILNDG-------TT-IGYDKCLIATG-- 308 (659)
T ss_pred eEecCCcceeChhHCcc-----cccCceE--EEeccceEEeeccc----CeEEecCC-------cE-eehhheeeecC--
Confidence 0012233333221 1122332 36677788887644 45778776 67 99999999999
Q ss_pred CCCCCCC-CCCcc-ccccCCCCCccEEecc-CCCCCC--CCCCCeEEEECCCcCHHHHHHHHHhc----cCeEEEEE
Q 022182 149 TNPFTPD-IRGLC-SFCSSATGTGEVIHST-QYKNGK--PYGGKNVLVVGSGNSGMEIALDLANH----AAKTSLVV 216 (301)
Q Consensus 149 ~~p~~p~-~~g~~-~~~~~~~~~g~~~~~~-~~~~~~--~~~~~~v~VvG~G~~g~e~a~~l~~~----g~~v~~~~ 216 (301)
.+|.... +.... .. .++-.++|.. ++.... ....+.|.|||+|+.|-|+|..|.+. |.+|+-+.
T Consensus 309 ~~Pk~l~~~~~A~~ev----k~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF 381 (659)
T KOG1346|consen 309 VRPKKLQVFEEASEEV----KQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVF 381 (659)
T ss_pred cCcccchhhhhcCHHh----hhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEee
Confidence 6675432 22111 11 0111222222 111111 11237899999999999999999875 45665543
No 285
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.41 E-value=1.1e-06 Score=78.17 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
.+|+|||||++|+.+|..|+++|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 389999999999999999999999999999876643
No 286
>PLN02576 protoporphyrinogen oxidase
Probab=98.40 E-value=5.8e-07 Score=82.96 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=38.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CCCeEEEecCCCCCcc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCYASI 45 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~vie~~~~~gg~ 45 (301)
+..+||+|||||++||++|+.|.+. |++|+|+|+++.+||.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 3467999999999999999999999 9999999999999984
No 287
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.39 E-value=5.9e-07 Score=82.84 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=36.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
+||+|||||++||++|..|++.|++|+|+|++..+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 589999999999999999999999999999999999843
No 288
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.37 E-value=2.5e-06 Score=72.13 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=35.4
Q ss_pred CcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 3 EQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 3 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
.+....+|+|||+|.+||+||..|.++ .+|++||.+.++||
T Consensus 4 ~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 4 QPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 344567999999999999999988654 68999999999987
No 289
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.37 E-value=6.5e-06 Score=77.72 Aligned_cols=110 Identities=18% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+|+|||||+.|+..|..|.+.|.+|+++|+.+.+. +. ...++.++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll----------------------~~-----------~d~eis~~ 358 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL----------------------PL-----------LDADVAKY 358 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc----------------------cc-----------CCHHHHHH
Confidence 4689999999999999999999999999999877532 00 01245566
Q ss_pred HHHHH-HHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecC---CCC-----ceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYV-SHFNIGPSIRYQRSVESASYDEATNMWNVKASNLL---SPG-----REIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~-~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~---~~~-----~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.... ++.++.+ +.++.|+.++..+......+.+.+.. +.+ ....+ +.+|.|++|+| ..|+..
T Consensus 359 l~~~ll~~~GV~I--~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~-i~aD~VlvAtG--r~Pnt~ 430 (659)
T PTZ00153 359 FERVFLKSKPVRV--HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKE-TYVDSCLVATG--RKPNTN 430 (659)
T ss_pred HHHHHhhcCCcEE--EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceE-EEcCEEEEEEC--cccCCc
Confidence 65543 4566555 89999999976542222444433211 000 00136 89999999999 666644
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.36 E-value=7.6e-06 Score=73.97 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CcEEEECCChHHHHHHHHHhh--------------CCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSL--------------QSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSS 73 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~--------------~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (301)
.+++|||||+.|+.+|..|.. .+.+|+++++.+.+- +
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll----------------------~------- 224 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL----------------------G------- 224 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc----------------------c-------
Confidence 389999999999999999875 368899999876421 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 74 YPMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 74 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
.+ .+++.+++.+..++.++++ +++++|+.++.+ .|.+.++ ++ +.+|.+|+|+|.
T Consensus 225 --~~--~~~~~~~~~~~L~~~gV~v--~~~~~v~~v~~~------~v~~~~g-------~~-i~~d~vi~~~G~ 278 (424)
T PTZ00318 225 --SF--DQALRKYGQRRLRRLGVDI--RTKTAVKEVLDK------EVVLKDG-------EV-IPTGLVVWSTGV 278 (424)
T ss_pred --cC--CHHHHHHHHHHHHHCCCEE--EeCCeEEEEeCC------EEEECCC-------CE-EEccEEEEccCC
Confidence 00 1256677777888888766 889999888532 2556554 56 899999999994
No 291
>PRK07233 hypothetical protein; Provisional
Probab=98.36 E-value=5.5e-07 Score=81.57 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=35.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
+|+|||||++||++|..|.+.|++|+|+|+++.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 68999999999999999999999999999999999843
No 292
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.35 E-value=2.4e-06 Score=73.20 Aligned_cols=35 Identities=34% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..+||+|||||.+|.++|..|++.|.+|.|+||+-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 35799999999999999999999999999999865
No 293
>PLN02676 polyamine oxidase
Probab=98.34 E-value=1e-06 Score=80.79 Aligned_cols=48 Identities=33% Similarity=0.461 Sum_probs=41.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCCCCCcccCCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDR 53 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~~~gg~w~~~~~~~ 53 (301)
..+||+|||||++|+++|.+|.+.|. +|+|+|++..+||.+....+++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC
Confidence 46799999999999999999999998 6999999999999766544433
No 294
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.34 E-value=8.1e-07 Score=81.90 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
+||+|||||++|+++|..|++.|++|+|+|++..+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCcee
Confidence 5899999999999999999999999999999999988543
No 295
>PLN02268 probable polyamine oxidase
Probab=98.34 E-value=5.9e-07 Score=81.50 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=35.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
.+|+|||||.+||+||+.|.+.|++|+|+|+++++||.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999999984
No 296
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.34 E-value=9.1e-07 Score=80.93 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=36.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhC----CCCeEEEecCCCCCcc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASI 45 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~~~~gg~ 45 (301)
++||+|||||++||++|+.|.+. |++|+|+|+++.+||.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 36999999999999999999998 9999999999999884
No 297
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.33 E-value=1.7e-05 Score=74.50 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHh----hCCCCeEEEecCCC
Q 022182 9 EVIMVGAGTSGLATAACLS----LQSIPYVILERENC 41 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~----~~g~~v~vie~~~~ 41 (301)
||+|||+|.||++||..++ +.|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 298
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.32 E-value=6.6e-06 Score=74.58 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 80 RAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
...+.+.+.+.+++.++++ +++++|+.+..+++.+.. .|...++ . .. +.++.||+|||.++
T Consensus 122 g~~l~~~L~~~a~~~Gv~i--~~~~~v~~l~~~~~~g~v~gv~~~~~-~-----~~-i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEI--RYGIAVDRIPPEAFDGAHDGPLTTVG-T-----HR-ITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEE--EeCCEEEEEEecCCCCeEEEEEEcCC-c-----EE-EEcCEEEEcCCCcc
Confidence 4567788888888888666 999999998765312222 2333221 1 46 88999999999654
No 299
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=7.1e-07 Score=79.62 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=35.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
++|+|+|||.|||+||+.|++.|++|+|+|+++.+||
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4899999999999999999999999999999999998
No 300
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.32 E-value=7.8e-06 Score=75.61 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
..+||+|||+|.+|++||..++ +.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4579999999999999999996 579999999886
No 301
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.31 E-value=8.1e-07 Score=82.12 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=35.5
Q ss_pred EEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 10 VIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
|+|||||++||+||..|++.|++|+|+|++..+||..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceE
Confidence 68999999999999999999999999999999998533
No 302
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.31 E-value=1.1e-06 Score=77.34 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=37.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 6999999999999999999999999999999999998543
No 303
>PLN02546 glutathione reductase
Probab=98.29 E-value=1.2e-05 Score=74.90 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=72.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||||+.|+.+|..|...|.+|+++++.+.+.. . ..+++..+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~----------------------~-----------~d~~~~~~ 298 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR----------------------G-----------FDEEVRDF 298 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc----------------------c-----------cCHHHHHH
Confidence 46899999999999999999999999999998764310 0 01356667
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+..++.++++ +.++.++++.... .+...+...++ .. ..+|.|++|+| ..|+..
T Consensus 299 l~~~L~~~GV~i--~~~~~v~~i~~~~-~g~v~v~~~~g-------~~-~~~D~Viva~G--~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEF--HTEESPQAIIKSA-DGSLSLKTNKG-------TV-EGFSHVMFATG--RKPNTK 353 (558)
T ss_pred HHHHHHHCCcEE--EeCCEEEEEEEcC-CCEEEEEECCe-------EE-EecCEEEEeec--cccCCC
Confidence 777777778665 8899999987543 23334433221 33 45899999999 555543
No 304
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.29 E-value=1.3e-05 Score=74.31 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=35.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...+||+|||||.||+.||..++..|.+|+|+|+....+|
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 4468999999999999999999999999999999875543
No 305
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.28 E-value=3.5e-05 Score=75.95 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=32.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
.+||+|||+|.+|+++|..+++.|.+|+|+|+...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999774
No 306
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.2e-06 Score=73.57 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
...|||||||||.||+.+|...++.|.+.+++-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 357899999999999999999999999999887643
No 307
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.24 E-value=1.8e-05 Score=73.32 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||||+.|+.+|..|+..+.+|+++++.+.+. ....
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~---------------------------------------~~~~ 392 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK---------------------------------------ADKV 392 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC---------------------------------------hhHH
Confidence 4699999999999999999999999999998765321 0012
Q ss_pred HHHHHHH-hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 87 l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+....+. .++.+ ++++.++.+..++ +....|++.++.++ ...+ +.+|.|++|+| ..|+..
T Consensus 393 l~~~l~~~~gV~i--~~~~~v~~i~~~~-~~v~~v~~~~~~~~--~~~~-i~~D~vi~a~G--~~Pn~~ 453 (515)
T TIGR03140 393 LQDKLKSLPNVDI--LTSAQTTEIVGDG-DKVTGIRYQDRNSG--EEKQ-LDLDGVFVQIG--LVPNTE 453 (515)
T ss_pred HHHHHhcCCCCEE--EECCeeEEEEcCC-CEEEEEEEEECCCC--cEEE-EEcCEEEEEeC--CcCCch
Confidence 2333333 36554 8899998886542 12223555543211 1256 89999999999 555543
No 308
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.24 E-value=2.1e-05 Score=64.94 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=34.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCC------CCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQS------IPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g------~~v~vie~~~~~gg 44 (301)
.+.++|+|||||+.|+++|+.|.+++ ..++|||+....||
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 44679999999999999999999987 78999999876554
No 309
>PLN02568 polyamine oxidase
Probab=98.23 E-value=1.9e-06 Score=79.74 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=38.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC-----CCeEEEecCCCCCcccCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQS-----IPYVILERENCYASIWKK 48 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~vie~~~~~gg~w~~ 48 (301)
.+||+|||||++|+++|..|.+.| ++|+|+|++..+||.+..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 469999999999999999999887 899999999999996543
No 310
>PRK10262 thioredoxin reductase; Provisional
Probab=98.23 E-value=1.8e-05 Score=68.83 Aligned_cols=105 Identities=23% Similarity=0.278 Sum_probs=70.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+. ....+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~-----------------------------------~~~~~~~~ 190 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR-----------------------------------AEKILIKR 190 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-----------------------------------CCHHHHHH
Confidence 4689999999999999999999999999999875321 00123444
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+..++.++.. ..++.++++..++ .+.-.|++.++..++ ...+ +.+|.||+|+| ..|+.
T Consensus 191 ~~~~l~~~gV~i--~~~~~v~~v~~~~-~~~~~v~~~~~~~~~-~~~~-i~~D~vv~a~G--~~p~~ 250 (321)
T PRK10262 191 LMDKVENGNIIL--HTNRTLEEVTGDQ-MGVTGVRLRDTQNSD-NIES-LDVAGLFVAIG--HSPNT 250 (321)
T ss_pred HHhhccCCCeEE--EeCCEEEEEEcCC-ccEEEEEEEEcCCCC-eEEE-EECCEEEEEeC--CccCh
Confidence 455555556544 8889999987543 122235544321100 1256 89999999999 55544
No 311
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.22 E-value=1.8e-06 Score=75.93 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=36.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCCCCCcccC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWK 47 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~~~gg~w~ 47 (301)
..+|||||||.||++||.+|.++|+ +++|+|..+++||--+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEe
Confidence 4589999999999999999997765 8999999999998443
No 312
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.21 E-value=2.1e-05 Score=67.54 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=65.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
..+|+|||+|++|+.+|..|.+.+.+|+++++.+.+. . ...
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~-----------------------------------~----~~~ 181 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-----------------------------------A----EKI 181 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-----------------------------------c----CHH
Confidence 4689999999999999999999999999999865310 0 011
Q ss_pred HHHHHHHh-CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCC
Q 022182 87 LDHYVSHF-NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPF 152 (301)
Q Consensus 87 l~~~~~~~-~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~ 152 (301)
+.+.+++. ++.. .+++.+++++.++ ....+++.+..++ ...+ +.+|.+|+|+| ..|.
T Consensus 182 ~~~~l~~~~gv~~--~~~~~v~~i~~~~--~~~~v~~~~~~~g--~~~~-i~~D~vi~a~G--~~~~ 239 (300)
T TIGR01292 182 LLDRLRKNPNIEF--LWNSTVKEIVGDN--KVEGVKIKNTVTG--EEEE-LKVDGVFIAIG--HEPN 239 (300)
T ss_pred HHHHHHhCCCeEE--EeccEEEEEEccC--cEEEEEEEecCCC--ceEE-EEccEEEEeeC--CCCC
Confidence 22333333 6544 8889999987543 3233444321111 1257 89999999999 4444
No 313
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.15 E-value=2.3e-06 Score=78.26 Aligned_cols=37 Identities=24% Similarity=0.510 Sum_probs=34.1
Q ss_pred CcEEEECCChHHHHHHHHHhhC------CCCeEEEecCCCCCc
Q 022182 8 VEVIMVGAGTSGLATAACLSLQ------SIPYVILERENCYAS 44 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~------g~~v~vie~~~~~gg 44 (301)
++|+|||||++||++|+.|.+. |.+|+|+|+++++||
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 4799999999999999999986 379999999999998
No 314
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.15 E-value=2.7e-06 Score=77.65 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=35.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 5899999999999999999999999999999998883
No 315
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.15 E-value=3.3e-06 Score=74.18 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=38.9
Q ss_pred CCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 2 KEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 2 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
..+....||+|||||.+||.+|+.|.+.|++|+|+|.++++||
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3445568999999999999999999999999999999998887
No 316
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.13 E-value=2.3e-05 Score=69.15 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=84.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
...|+++|+|..|+.+|..|...+.+|+++++.+.+ ++. .-.+++.+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------------------------~~~-----lf~~~i~~~ 260 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------------------------LPR-----LFGPSIGQF 260 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------------------------hhh-----hhhHHHHHH
Confidence 457999999999999999999999999999987631 000 112457777
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTPDIR 157 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p~~~ 157 (301)
...+.++.++.. +.++.+.+++.+..+....|.+.++ .+ +.+|.||+++| ..|..+.+.
T Consensus 261 ~~~y~e~kgVk~--~~~t~~s~l~~~~~Gev~~V~l~dg-------~~-l~adlvv~GiG--~~p~t~~~~ 319 (478)
T KOG1336|consen 261 YEDYYENKGVKF--YLGTVVSSLEGNSDGEVSEVKLKDG-------KT-LEADLVVVGIG--IKPNTSFLE 319 (478)
T ss_pred HHHHHHhcCeEE--EEecceeecccCCCCcEEEEEeccC-------CE-eccCeEEEeec--ccccccccc
Confidence 788888888766 8999999998877655666777765 67 99999999999 777776554
No 317
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.12 E-value=3.2e-06 Score=76.21 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
+.+||+|||+|.+|+.+|..|++.|.+|+++|+++.+||.|.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 368999999999999999999999999999999999999766
No 318
>PLN02529 lysine-specific histone demethylase 1
Probab=98.10 E-value=4.7e-06 Score=79.22 Aligned_cols=41 Identities=37% Similarity=0.353 Sum_probs=37.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
..++|+|||||++|++||..|.+.|++|+|+|+++.+||..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCce
Confidence 45799999999999999999999999999999999888743
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.08 E-value=4.6e-05 Score=70.73 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||||.+|+.+|..|+..+.+|+++++.+.+. ...+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~---------------------------------------~~~~ 391 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK---------------------------------------ADQV 391 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc---------------------------------------ccHH
Confidence 4689999999999999999999999999998775421 0012
Q ss_pred HHHHHHH-hCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSH-FNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~-~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+.... .++. +++++.++.+..++ +..-.+++.+..++ ...+ +.+|.+++|+| ..|+.
T Consensus 392 l~~~l~~~~gI~--i~~~~~v~~i~~~~-g~v~~v~~~~~~~g--~~~~-i~~D~v~~~~G--~~p~~ 451 (517)
T PRK15317 392 LQDKLRSLPNVT--IITNAQTTEVTGDG-DKVTGLTYKDRTTG--EEHH-LELEGVFVQIG--LVPNT 451 (517)
T ss_pred HHHHHhcCCCcE--EEECcEEEEEEcCC-CcEEEEEEEECCCC--cEEE-EEcCEEEEeEC--CccCc
Confidence 2222222 3544 48999999987543 12223455443222 2257 89999999999 55543
No 320
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.08 E-value=6.6e-05 Score=66.49 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=63.8
Q ss_pred CCcEEEECCChHHHHHHHHHhh----CC--CCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCH
Q 022182 7 GVEVIMVGAGTSGLATAACLSL----QS--IPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~----~g--~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (301)
..+|+|||+|++|+.+|..|.+ .| .+|+++. .+.+. + . ..
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l----------------------~---------~--~~ 190 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL----------------------P---------G--FP 190 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc----------------------c---------c--CC
Confidence 4589999999999999999975 34 4788883 22110 0 0 01
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
+++...+.+..++.+++. ..+++++.++. + .|.+.++ .+ +.+|.||+|+|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v--~~~~~v~~i~~----~--~v~~~~g-------~~-i~~D~vi~a~G~ 241 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEV--HEGAPVTRGPD----G--ALILADG-------RT-LPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHHCCCEE--EeCCeeEEEcC----C--eEEeCCC-------CE-EecCEEEEccCC
Confidence 245666777777888766 88888988743 2 3555543 56 899999999994
No 321
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.03 E-value=2.7e-05 Score=71.31 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
..+..-+...+...|+.+|..+ ..++.|++|.... ++.|-|.+..| . +.+.++|-|+|.++
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~v--iE~cpV~~i~~~~-~~~~gVeT~~G--------~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALV--IENCPVTGLHVET-DKFGGVETPHG--------S-IETECVVNAAGVWA 243 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEE--EecCCcceEEeec-CCccceeccCc--------c-eecceEEechhHHH
Confidence 3466677788888889999766 9999999997654 35667877765 3 78999999999755
No 322
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.02 E-value=6e-05 Score=63.19 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=34.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA 43 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~g 43 (301)
..++|+||||||..|++.|++|.-+ +.+|.|+|++..++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4579999999999999999999876 89999999988665
No 323
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.02 E-value=0.00028 Score=64.30 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|+|||||..|+.+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999998765
No 324
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.00 E-value=7.5e-06 Score=74.97 Aligned_cols=36 Identities=33% Similarity=0.366 Sum_probs=34.6
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
+|+|||||++|+++|..|.+.|++|+|+|+++.+||
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG 36 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGG 36 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCc
Confidence 589999999999999999999999999999999887
No 325
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.98 E-value=1e-05 Score=77.42 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=37.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASI 45 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~ 45 (301)
...+|+|||||++|+++|..|.+.|++|+|+|++..+||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 3578999999999999999999999999999999988874
No 326
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.98 E-value=0.00015 Score=63.42 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC--CeEEEecCCCCCcccCCCCCCceEEecccc---cccCCCCC----CCCC---
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSI--PYVILERENCYASIWKKYSYDRLRLHLAKQ---FCQLPHLP----FPSS--- 73 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~vie~~~~~gg~w~~~~~~~~~~~~~~~---~~~~~~~~----~~~~--- 73 (301)
..++|+|||||.++..++..|.+.+. +|+++-|+..+--.-... +. ...-.|.. +..++... ....
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~-f~-ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ 266 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSP-FV-NEIFSPEYVDYFYSLPDEERRELLREQRHT 266 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----C-CH-HGGGSHHHHHHHHTS-HHHHHHHHHHTGGG
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcccc-ch-hhhcCchhhhhhhcCCHHHHHHHHHHhHhh
Confidence 45789999999999999999998865 788888876421000000 00 00000000 00000000 0000
Q ss_pred CCCCCCHHHHHHH-HHHHHHHh--CCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 74 YPMFVSRAQFIEH-LDHYVSHF--NIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 74 ~~~~~~~~~~~~~-l~~~~~~~--~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
...-++.+.+.+. -.-|.++. .-...++.+++|+++...+ .+.|.+++.+..++ ...+ +.+|.||+|||.
T Consensus 267 ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~--~~~~-~~~D~VilATGy 339 (341)
T PF13434_consen 267 NYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTG--EEET-LEVDAVILATGY 339 (341)
T ss_dssp TSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT----EEE-EEESEEEE---E
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCC--CeEE-EecCEEEEcCCc
Confidence 0001122222111 11111111 1234558889999998876 34899999875443 3366 899999999994
No 327
>PLN02487 zeta-carotene desaturase
Probab=97.97 E-value=9.5e-06 Score=75.40 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=36.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCccc
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIW 46 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w 46 (301)
+++|+|||||++|+++|..|.+.|++|+|+|+.+..||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCce
Confidence 3599999999999999999999999999999999888743
No 328
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.95 E-value=1.2e-05 Score=71.31 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
.||+|||||++|+.+|..|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 59999999999999999999999999999976644
No 329
>PRK12831 putative oxidoreductase; Provisional
Probab=97.93 E-value=0.00049 Score=62.96 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|||||..|+.+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999998764
No 330
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.92 E-value=1.3e-05 Score=73.75 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=37.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
|||+|||+||+|+.+|..|++.|++|+++|+....|+.|-
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 6999999999999999999999999999999999988873
No 331
>PLN02612 phytoene desaturase
Probab=97.91 E-value=1.6e-05 Score=74.31 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=36.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
.+++|+|||||++|+++|.+|.+.|++++|+|+++.+||
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG 130 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGG 130 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCC
Confidence 357999999999999999999999999999999988887
No 332
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.89 E-value=0.00037 Score=61.48 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~ 40 (301)
..+|+|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999997 99998754
No 333
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.89 E-value=1.8e-05 Score=73.94 Aligned_cols=39 Identities=36% Similarity=0.510 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC--CCCc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYAS 44 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~--~~gg 44 (301)
..+||+|||+|.+|++||..+++.|.+|+|+|+.+ ..||
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 35799999999999999999999999999999998 5665
No 334
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.88 E-value=2e-05 Score=70.38 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWK 47 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~ 47 (301)
.+||+|||||..|.-||.-++-+|.++.++|+++...|+..
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 58999999999999999999999999999999997766543
No 335
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.87 E-value=0.00018 Score=64.12 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENCY 42 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 42 (301)
||+|||+|.+||++|..|.+. ++|+|+-|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999988754
No 336
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.87 E-value=0.00023 Score=60.37 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC----CCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~~ 40 (301)
.+.||+|||||-.|.+.|..|.++ |++|+|+|++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErdd 123 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDD 123 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccC
Confidence 367999999999999999999764 79999999987
No 337
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.84 E-value=7.7e-05 Score=62.63 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CC-CeEEEecCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILERENC 41 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~vie~~~~ 41 (301)
.+++|+|||||.+|+.+|..+.++ |. +|.|+|....
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 578999999999999999999865 54 8999998763
No 338
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.83 E-value=0.00025 Score=62.54 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETT 149 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~ 149 (301)
.++..-+.++.+.+|..+ +++++|..++..+ +....|.+.++ .+ +.+|+||+|.|..+
T Consensus 173 ~~vvkni~~~l~~~G~ei--~f~t~VeDi~~~~-~~~~~v~~~~g-------~~-i~~~~vvlA~Grsg 230 (486)
T COG2509 173 PKVVKNIREYLESLGGEI--RFNTEVEDIEIED-NEVLGVKLTKG-------EE-IEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHHhcCcEE--EeeeEEEEEEecC-CceEEEEccCC-------cE-EecCEEEEccCcch
Confidence 456667788888888666 9999999998765 22455666655 57 99999999999744
No 339
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.82 E-value=1.9e-05 Score=67.83 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCC-CCeEEEecCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS-IPYVILERENCY 42 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~~~ 42 (301)
||++|||+|++|..+|.+|++.+ .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999997 699999987753
No 340
>PLN03000 amine oxidase
Probab=97.82 E-value=3.1e-05 Score=74.45 Aligned_cols=43 Identities=30% Similarity=0.297 Sum_probs=39.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~ 48 (301)
...+|+|||||++|+.+|..|.+.|++|+|+|++..+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 3579999999999999999999999999999999999996543
No 341
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.79 E-value=3.2e-05 Score=67.35 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCC--eEEEecCCCCCcccC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIP--YVILERENCYASIWK 47 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~--v~vie~~~~~gg~w~ 47 (301)
..++|+|+|||.+||++|++|++++-+ ++++|+.+++||-.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 467999999999999999999999765 566999999998443
No 342
>PLN02976 amine oxidase
Probab=97.79 E-value=3.3e-05 Score=77.22 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=39.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~ 48 (301)
..++|+|||||++|+++|..|.+.|++|+|+|+++.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 3579999999999999999999999999999999999997654
No 343
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.001 Score=64.70 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~ 40 (301)
.++|+|||||..|+.+|..+.+.|.+ |++++++.
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99998764
No 344
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.71 E-value=0.00037 Score=65.29 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
..+|+|||||+.|+.+|..|.+.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998753
No 345
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.69 E-value=0.00015 Score=66.83 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|+|||+|.+|+++|..|.++|.+|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
No 346
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.66 E-value=0.00066 Score=62.07 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
..+|+|||+|..|+.+|..|.+.|. +|+++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 5689999999999999999999998 899998764
No 347
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.65 E-value=6.6e-05 Score=65.42 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=67.0
Q ss_pred cEEEECCChHHHHHHHHHhhC--------------CCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQ--------------SIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSY 74 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~--------------g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (301)
.+|||||||.|...|.+|+.. ..+|+++|..+.+= +.
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL----------------------~m------- 270 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL----------------------NM------- 270 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH----------------------HH-------
Confidence 699999999999999998652 35789998776420 00
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 75 PMFVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
-.+.+.+|.++...+.++.. ..++.|..++... +..+.+++ +.++ ++|-.+|.|||...+|..-
T Consensus 271 ----Fdkrl~~yae~~f~~~~I~~--~~~t~Vk~V~~~~------I~~~~~~g---~~~~-iPYG~lVWatG~~~rp~~k 334 (491)
T KOG2495|consen 271 ----FDKRLVEYAENQFVRDGIDL--DTGTMVKKVTEKT------IHAKTKDG---EIEE-IPYGLLVWATGNGPRPVIK 334 (491)
T ss_pred ----HHHHHHHHHHHHhhhcccee--ecccEEEeecCcE------EEEEcCCC---ceee-ecceEEEecCCCCCchhhh
Confidence 01234555555555556555 8888888885433 44443322 3367 9999999999976666543
No 348
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.59 E-value=0.0039 Score=59.58 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
..++|+|||+|..|+.+|..+.+.|. +|+++.+..
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35789999999999999999999987 599998764
No 349
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.58 E-value=0.0001 Score=66.19 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++||+|||+|++|+++|..|++.|.+|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999864
No 350
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.58 E-value=0.0046 Score=56.70 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 41 (301)
.++|+|||+|..|+.+|..+.+.|. +|+++++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 4689999999999999999999996 7999987653
No 351
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00012 Score=61.80 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++||+|||||.+|++|+.+|.+.|.++.|+.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 5799999999999999999999999999998654
No 352
>PRK02106 choline dehydrogenase; Validated
Probab=97.52 E-value=0.00012 Score=68.68 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhh-CCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSL-QSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~vie~~~ 40 (301)
..+|+||||+|++|+.+|.+|++ .|.+|+|+|+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 35899999999999999999999 799999999985
No 353
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.49 E-value=0.001 Score=66.48 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=65.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
..+|+|||+|+.|+.+|..|.+.|. .|+|+|..+.+ ..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----------------------------------------~~ 355 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----------------------------------------SP 355 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----------------------------------------hH
Confidence 4689999999999999999999996 57888865431 11
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
.+.+..++.++.+ +.++.++.+..++ ..-.|++....+ ...+ +.+|.|+++.| ..|+.
T Consensus 356 ~l~~~L~~~GV~i--~~~~~v~~i~g~~--~v~~V~l~~~~g---~~~~-i~~D~V~va~G--~~Pnt 413 (985)
T TIGR01372 356 EARAEARELGIEV--LTGHVVAATEGGK--RVSGVAVARNGG---AGQR-LEADALAVSGG--WTPVV 413 (985)
T ss_pred HHHHHHHHcCCEE--EcCCeEEEEecCC--cEEEEEEEecCC---ceEE-EECCEEEEcCC--cCchh
Confidence 1334455667655 8888888886433 222234432111 1157 89999999999 55553
No 354
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.49 E-value=0.0026 Score=55.51 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC----CCCeEEEecC--CCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQ----SIPYVILERE--NCYA 43 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~--~~~g 43 (301)
+..+||+|+||||.|+++|..|... ..++.++|.. +.++
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~ 78 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLG 78 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccc
Confidence 3478999999999999999999865 4689999987 4444
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.47 E-value=0.0073 Score=57.87 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
.++|+|||+|..|+.+|..+.++|. +|+++.++.
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 4689999999999999999999997 699988764
No 356
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00018 Score=66.94 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=35.5
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
|+.....+|+||||+|.+|..+|.+|...|.+|+|+|+..
T Consensus 1 ~~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 1 MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3445567999999999999999999998899999999874
No 357
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.38 E-value=0.0024 Score=58.59 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
.++|+|||+|..|+.+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 5689999999999999999998886 688776544
No 358
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.37 E-value=0.016 Score=53.38 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSI-PYVILERENC 41 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 41 (301)
..++|+|||||..|+.+|..+.+.|. +|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 35689999999999999988888875 7999987653
No 359
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.35 E-value=0.00047 Score=58.46 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC--CCCcc
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN--CYASI 45 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~--~~gg~ 45 (301)
..+||+|||||.+|+.+|.+|+..|.+|+|+|++. .+||.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 46799999999999999999999999999999865 45664
No 360
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.32 E-value=0.00053 Score=59.74 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC----CCCe-EEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCH
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ----SIPY-VILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSR 80 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v-~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (301)
.+..|.|||+|+-|-.+|+.|.+. |.+| -+|+.....+ .-.|
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~----------------------------kiLP----- 392 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME----------------------------KILP----- 392 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh----------------------------hhhH-----
Confidence 356899999999999999999874 4555 3444322111 0001
Q ss_pred HHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 81 AQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+.+|-.+-+++-|+.+ +-+..|.++.... +...+.+.+| .+ +..|.||+|+| ..|+.
T Consensus 393 eyls~wt~ekir~~GV~V--~pna~v~sv~~~~--~nl~lkL~dG-------~~-l~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDV--RPNAKVESVRKCC--KNLVLKLSDG-------SE-LRTDLVVVAVG--EEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcCcee--ccchhhhhhhhhc--cceEEEecCC-------Ce-eeeeeEEEEec--CCCch
Confidence 124444455566778776 8899998887755 5566777776 67 89999999999 55654
No 361
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.31 E-value=0.003 Score=62.59 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|+|||||..|+-+|..+.+.|.+|+++.++.
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4789999999999999999999999999998764
No 362
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.28 E-value=0.00024 Score=62.45 Aligned_cols=40 Identities=25% Similarity=0.462 Sum_probs=36.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCc
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYAS 44 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg 44 (301)
...||++|||+|..||.+|..|++.|.+|+++|++...||
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 4578999999999999999999999999999999977776
No 363
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.27 E-value=0.0011 Score=60.59 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|||+|.+|+..|..|...+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 35789999999999999999999999999998764
No 364
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.26 E-value=0.0057 Score=55.08 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhC----CCCeEEEecCCCCCcccC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ----SIPYVILERENCYASIWK 47 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~vie~~~~~gg~w~ 47 (301)
.++.=|||+|.|+|++|..|.+- |.+|+|+|+.+..||...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 35788999999999999999986 669999999998887544
No 365
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.26 E-value=0.0055 Score=53.57 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.2
Q ss_pred ceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCC
Q 022182 98 PSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGET 148 (301)
Q Consensus 98 ~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~ 148 (301)
+.+.-+++|++++...+ +.+.+.+....++ +..+ +.+|.||+|||..
T Consensus 293 v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~--~~~t-~~~D~vIlATGY~ 339 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD-GRYRLTLRHHETG--ELET-VETDAVILATGYR 339 (436)
T ss_pred eeeccccceeeeecCCC-ceEEEEEeeccCC--CceE-EEeeEEEEecccc
Confidence 44577788988877653 4488888765443 3467 8899999999953
No 366
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.25 E-value=0.00041 Score=61.78 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
+||+|||+|++|+++|..|.+.|.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999875
No 367
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.22 E-value=0.0077 Score=59.49 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHhhC-C-CCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ-S-IPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~-g-~~v~vie~~~ 40 (301)
.++|+|||||..|+.+|..+.+. | .+|+++.++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 57899999999999999998887 5 3899998765
No 368
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.15 E-value=0.00011 Score=58.07 Aligned_cols=43 Identities=26% Similarity=0.473 Sum_probs=35.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhC--CCCeEEEecCCCCC-cccCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQ--SIPYVILERENCYA-SIWKKY 49 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~vie~~~~~g-g~w~~~ 49 (301)
..||+|||||.+|+++|+...++ ..+|.|+|.+-.+| |.|...
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGG 121 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGG 121 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccc
Confidence 35999999999999999999865 57999999887665 577653
No 369
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00063 Score=57.54 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENCYA 43 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~g 43 (301)
..|-|||||.+|-.+|+++++.|++|.++|-++.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 479999999999999999999999999999877433
No 370
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.10 E-value=0.00049 Score=64.17 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhhCC-CCeEEEecCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~ 40 (301)
|+||||+|.+|+.+|.+|++.+ ++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999875
No 371
>PLN02785 Protein HOTHEAD
Probab=97.08 E-value=0.00076 Score=63.35 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=32.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
...||++|||+|.+|+.+|.+|.+ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 346999999999999999999999 68999999976
No 372
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.04 E-value=0.044 Score=52.40 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
.++|+|||+|..|+.+|..+.++|. +|+++.++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4689999999999999999999985 799998764
No 373
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.91 E-value=0.013 Score=58.75 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~ 40 (301)
..++|+|||||..|+-+|..+.+.|.+ |+++.++.
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 357999999999999999999999985 67776543
No 374
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.90 E-value=0.0044 Score=52.99 Aligned_cols=104 Identities=16% Similarity=0.072 Sum_probs=70.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHH
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFI 84 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (301)
..+++++|||||..++..|--++.+|.++.++=|...+= ..+ .+.+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL----------------------R~F-----------D~~i~ 233 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL----------------------RGF-----------DEMIS 233 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh----------------------cch-----------hHHHH
Confidence 346899999999999999999999999998887765420 000 12344
Q ss_pred HHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCCC
Q 022182 85 EHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFTP 154 (301)
Q Consensus 85 ~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~p 154 (301)
+.+.+..+..+++. +.++.++.+.+..++ ...+.+..+ .. ..+|.|+.|+| ..|+..
T Consensus 234 ~~v~~~~~~~ginv--h~~s~~~~v~K~~~g-~~~~i~~~~-------~i-~~vd~llwAiG--R~Pntk 290 (478)
T KOG0405|consen 234 DLVTEHLEGRGINV--HKNSSVTKVIKTDDG-LELVITSHG-------TI-EDVDTLLWAIG--RKPNTK 290 (478)
T ss_pred HHHHHHhhhcceee--cccccceeeeecCCC-ceEEEEecc-------cc-ccccEEEEEec--CCCCcc
Confidence 55555556667665 788888888776533 344444433 23 45799999999 555544
No 375
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.019 Score=49.33 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=66.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
.++|+|||+|-+++..|..|...+.+|+++=|++.+- .. +.
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~r-----------------------------------a~----~~ 183 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR-----------------------------------AE----EI 183 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccC-----------------------------------cC----HH
Confidence 4599999999999999999999999999998876421 01 12
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
+.+.++... .+.+.+++.+..+.-++ .-.|.+++..+ +... +.+|.++++.| ..|..
T Consensus 184 ~~~~l~~~~-~i~~~~~~~i~ei~G~~---v~~v~l~~~~~---~~~~-~~~~gvf~~iG--~~p~~ 240 (305)
T COG0492 184 LVERLKKNV-KIEVLTNTVVKEILGDD---VEGVVLKNVKG---EEKE-LPVDGVFIAIG--HLPNT 240 (305)
T ss_pred HHHHHHhcC-CeEEEeCCceeEEecCc---cceEEEEecCC---ceEE-EEeceEEEecC--CCCch
Confidence 222222221 34448999998886543 22355554321 2256 89999999999 55553
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.68 E-value=0.023 Score=56.43 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhC-CC-CeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQ-SI-PYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~vie~~~ 40 (301)
..++|+|||||..|+.+|..+.+. |. +|+++.++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 357899999999999999998876 75 799998765
No 377
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.68 E-value=0.0019 Score=42.09 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred EECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 191 VVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 191 VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999987
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.67 E-value=0.063 Score=50.60 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCC-CCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQS-IPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~vie~~~ 40 (301)
.++|+|||+|..|+.+|..+.+.+ .+++|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 568999999999999999888888 5688887764
No 379
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.64 E-value=0.0026 Score=57.14 Aligned_cols=43 Identities=26% Similarity=0.465 Sum_probs=34.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKK 48 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~ 48 (301)
..|||+|+|-|..-..+|..|++.|.+|+-+|+++..||.|..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 4689999999999999999999999999999999999997764
No 380
>PRK13984 putative oxidoreductase; Provisional
Probab=96.64 E-value=0.04 Score=52.35 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC------CeEEEe
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI------PYVILE 37 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~------~v~vie 37 (301)
.++|+|||||..|+.+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4699999999999999999988753 566653
No 381
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.63 E-value=0.0063 Score=56.51 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|||+|.+|.-.|..|+....+|.+.-|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 46799999999999999999999988998887764
No 382
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.59 E-value=0.023 Score=51.22 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=63.9
Q ss_pred EEECCChHHHHHH-HHHh----hCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHH
Q 022182 11 IMVGAGTSGLATA-ACLS----LQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIE 85 (301)
Q Consensus 11 vIIGaG~aGl~~A-~~l~----~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
+|++.|..|+..+ ..+. +.|.+|++++..+.. .+..++.+
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps-----------------------------------lpG~rL~~ 263 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS-----------------------------------VPGLRLQN 263 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-----------------------------------CchHHHHH
Confidence 6688888898887 4443 469999999865421 11235677
Q ss_pred HHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEE-EEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 86 HLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNV-KASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 86 ~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V-~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+.+..++.++.+ ..+++|++++.++ +...+ ...++ .... +.+|.||+|+|.+..
T Consensus 264 aL~~~l~~~Gv~I--~~g~~V~~v~~~~--~~V~~v~~~~g-----~~~~-i~AD~VVLAtGrf~s 319 (422)
T PRK05329 264 ALRRAFERLGGRI--MPGDEVLGAEFEG--GRVTAVWTRNH-----GDIP-LRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHhCCCEE--EeCCEEEEEEEeC--CEEEEEEeeCC-----ceEE-EECCEEEEeCCCccc
Confidence 7777777777655 8999999998754 33333 22222 1256 899999999996543
No 383
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.58 E-value=0.0025 Score=49.23 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
+|+|||||..|.++|..|+.+|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998765
No 384
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.45 E-value=0.003 Score=56.37 Aligned_cols=34 Identities=38% Similarity=0.494 Sum_probs=31.8
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
++|+|||+|.+|+++|..|++.|.+|+++++++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 5799999999999999999999999999998773
No 385
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.43 E-value=0.004 Score=57.55 Aligned_cols=38 Identities=32% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhC-CCCeEEEecCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQ-SIPYVILERENCY 42 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~vie~~~~~ 42 (301)
...||.+|||||.||+.+|.+|.+. ..+|+++|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999998 6799999987654
No 386
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0051 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
++++|||+|..|...|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998764
No 387
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.36 E-value=0.005 Score=48.73 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999875
No 388
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.015 Score=49.75 Aligned_cols=101 Identities=17% Similarity=0.068 Sum_probs=70.2
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+-+-+|||||..+|.||-.|.-.|++|++.=|+-.+-| + ..++.+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG-----------------------F-----------Dqdmae~ 243 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG-----------------------F-----------DQDMAEL 243 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc-----------------------c-----------cHHHHHH
Confidence 45789999999999999999999999998876542211 0 1468888
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
+.+..++.|+.+ ...+..+.++..++ +...|...+..++ +... -.||.|++|.|.
T Consensus 244 v~~~m~~~Gikf--~~~~vp~~Veq~~~-g~l~v~~k~t~t~--~~~~-~~ydTVl~AiGR 298 (503)
T KOG4716|consen 244 VAEHMEERGIKF--LRKTVPERVEQIDD-GKLRVFYKNTNTG--EEGE-EEYDTVLWAIGR 298 (503)
T ss_pred HHHHHHHhCCce--eecccceeeeeccC-CcEEEEeeccccc--cccc-chhhhhhhhhcc
Confidence 888899999876 54545556655442 4466665543322 1122 357999999994
No 389
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.26 E-value=0.0042 Score=55.73 Aligned_cols=33 Identities=33% Similarity=0.392 Sum_probs=31.1
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
+|+|||+|.+|+|+|..|++.|.+|+++++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999998873
No 390
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.21 E-value=0.005 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
++|+|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4899999999999999999999999999998764
No 391
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.16 E-value=0.031 Score=49.48 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCC
Q 022182 79 SRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (301)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p 151 (301)
...++.+.+...+++.++.+ +++++|++| ++ +.|.+.+..+. .. +.||.||+|||..+.|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i--~~~~~V~~i--~~--~~~~v~~~~~~------~~-~~a~~vIlAtGG~s~p 143 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQF--HTRHRWIGW--QG--GTLRFETPDGQ------ST-IEADAVVLALGGASWS 143 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEE--EeCCEEEEE--eC--CcEEEEECCCc------eE-EecCEEEEcCCCcccc
Confidence 67889999999999998776 999999999 22 35888775321 46 8999999999975544
No 392
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.006 Score=53.22 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=44.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCC
Q 022182 5 AAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYD 52 (301)
Q Consensus 5 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~ 52 (301)
+..+||||||-|..=-..|....+.|.+|+=+|+++..||.|....++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 456899999999999999999999999999999999999999987655
No 393
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.13 E-value=0.013 Score=54.98 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCCCCcccCCCCCCceEEecccccccCCCCCCCCCCCCCCCHHHHHHH
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENCYASIWKKYSYDRLRLHLAKQFCQLPHLPFPSSYPMFVSRAQFIEH 86 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~~gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (301)
+.+-+|||+|.-|+.+|..|...|.++++++-.+.+- .. +.. ..-.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM---------------------------er--QLD---~~ag~l 192 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM---------------------------ER--QLD---RTAGRL 192 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHH---------------------------HH--hhh---hHHHHH
Confidence 4467999999999999999999999999997544210 00 000 012234
Q ss_pred HHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCCCCC
Q 022182 87 LDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTNPFT 153 (301)
Q Consensus 87 l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p~~ 153 (301)
|+...++.++.+ +++...+.+-.. ...-.+.+.++ .. +.+|.||+|+| -+|+.
T Consensus 193 L~~~le~~Gi~~--~l~~~t~ei~g~--~~~~~vr~~DG-------~~-i~ad~VV~a~G--IrPn~ 245 (793)
T COG1251 193 LRRKLEDLGIKV--LLEKNTEEIVGE--DKVEGVRFADG-------TE-IPADLVVMAVG--IRPND 245 (793)
T ss_pred HHHHHHhhccee--ecccchhhhhcC--cceeeEeecCC-------Cc-ccceeEEEecc--ccccc
Confidence 566667778766 555555444332 23344666665 56 89999999999 55553
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.10 E-value=0.01 Score=51.33 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
-.+|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999875
No 395
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.06 E-value=0.0052 Score=43.76 Aligned_cols=37 Identities=32% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 183 ~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
..++++|+|||+|..|..-+..|.+.|.+|+++....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3468999999999999999999999999999998773
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.05 E-value=0.0072 Score=43.03 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|||+|..|..-+..|.+.|.+++|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 46799999999999999999999999999998873
No 397
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.011 Score=50.55 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
.+|.|||+|..|...|..++..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999998764
No 398
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.009 Score=54.73 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+|+|||.|++|+++|..|.++|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 689999999999999999999999999998764
No 399
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.88 E-value=0.016 Score=46.86 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|||||..|...+..|.+.|.+|+|++++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35699999999999999999999999999998653
No 400
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.84 E-value=0.016 Score=44.68 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~ 39 (301)
..++|+|||||..|..-+..|.+.|.+|+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4679999999999999999999999999999643
No 401
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.012 Score=54.06 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=33.1
Q ss_pred CCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 184 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+.++|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 345799999999999999999999999999998886
No 402
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.77 E-value=0.018 Score=52.46 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHH-hccCeEEEEEecCc
Q 022182 185 GGKNVLVVGSGNSGMEIALDLA-NHAAKTSLVVRSPV 220 (301)
Q Consensus 185 ~~~~v~VvG~G~~g~e~a~~l~-~~g~~v~~~~r~~~ 220 (301)
.+++|+|||+|.+|+.+|..|. +.|.+|+++++.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4689999999999999999765 56999999999873
No 403
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.75 E-value=0.013 Score=53.73 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=32.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHHh--ccCeEEEEEecC
Q 022182 185 GGKNVLVVGSGNSGMEIALDLAN--HAAKTSLVVRSP 219 (301)
Q Consensus 185 ~~~~v~VvG~G~~g~e~a~~l~~--~g~~v~~~~r~~ 219 (301)
.+++|+|||+|..|+.+|..|.+ .|.+|+++++.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 46899999999999999999986 699999999987
No 404
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.013 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++|.|||+|..|...|..|++.|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999875
No 405
>PRK07236 hypothetical protein; Provisional
Probab=95.72 E-value=0.012 Score=52.56 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
..+|+|||+|.+|+.+|..|++.|.+|++++|++
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4789999999999999999999999999999987
No 406
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.69 E-value=0.011 Score=51.74 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=28.9
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 69999999999999999999999999999987
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.68 E-value=0.028 Score=42.20 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCC-eEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIP-YVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~vie~~~ 40 (301)
..++++|||+|-+|..++..|...|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 467999999999999999999999987 99998764
No 408
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.67 E-value=0.011 Score=53.01 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=31.5
Q ss_pred eeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCC
Q 022182 99 SIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGE 147 (301)
Q Consensus 99 ~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~ 147 (301)
.|+++++|++|+.++ +.++|++.++ .+ +.||+||+|+..
T Consensus 225 ~i~l~~~V~~I~~~~--~~v~v~~~~g-------~~-~~ad~VI~a~p~ 263 (450)
T PF01593_consen 225 EIRLNTPVTRIERED--GGVTVTTEDG-------ET-IEADAVISAVPP 263 (450)
T ss_dssp GEESSEEEEEEEEES--SEEEEEETTS-------SE-EEESEEEE-S-H
T ss_pred eeecCCcceeccccc--cccccccccc-------eE-EecceeeecCch
Confidence 469999999999977 7788888876 46 899999999985
No 409
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.66 E-value=0.012 Score=52.91 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=31.0
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
++|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999975
No 410
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.63 E-value=0.013 Score=52.41 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=32.8
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.++++|||||.+|++.|.+|++.|.+|+++++.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5889999999999999999999999999999998
No 411
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.62 E-value=0.017 Score=46.44 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 182 ~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.++....|+|||+|.+|+-+|..|++.|.+|.+++|+-
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 44456789999999999999999999999999999973
No 412
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.60 E-value=0.02 Score=52.35 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|+|+|+|..|+++|..|++.|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999874
No 413
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.60 E-value=0.021 Score=44.67 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=30.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.+.+|+|+|+|.+|..|+..|..+|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35799999999999999999999999999999765
No 414
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.018 Score=49.21 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.+|+|||+|..|...|..|++.|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 379999999999999999999999999999875
No 415
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.47 E-value=0.026 Score=45.47 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERE 39 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~ 39 (301)
..++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4679999999999999999999999999999754
No 416
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.47 E-value=0.019 Score=44.30 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEE
Q 022182 182 KPYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVV 216 (301)
Q Consensus 182 ~~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~ 216 (301)
....+++|+|||+|..|..-+..|.+.|.+|+++.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 34568999999999999999999999999999994
No 417
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.02 Score=48.96 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++|+|||+|..|...|..|++.|++|+++|++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999765
No 418
>PRK06847 hypothetical protein; Provisional
Probab=95.44 E-value=0.018 Score=51.20 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.0
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999986
No 419
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.38 E-value=0.019 Score=56.31 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 184 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
..+++|+|||+|..|+.+|..|++.|.+||++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 457999999999999999999999999999999864
No 420
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.34 E-value=0.027 Score=42.96 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
|+|+|+|..|...|..|.+.|.+|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998764
No 421
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.023 Score=48.75 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 422
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.31 E-value=0.032 Score=48.32 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|+|||+|..|...|..|.+.|.+|+++.++.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4689999999999999999999999999999865
No 423
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.31 E-value=0.023 Score=48.25 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=31.2
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecCceE
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHV 222 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~ 222 (301)
+++|||+|.+|.=+|..++++|++|-++++++ +|
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~-HI 36 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN-HI 36 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccc-cC
Confidence 58999999999999999999999999999987 44
No 424
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.30 E-value=0.044 Score=48.84 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcEEEEEeecCCCCceeEEEEeeCEEEEecCCCCC
Q 022182 78 VSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMWNVKASNLLSPGREIEEYYSGRFLVVASGETTN 150 (301)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~ 150 (301)
.+...+...+.+.+.+ ++.+ ++++.|++++.++ +.|.|++.++ .. +.+|.||+|+|.++.
T Consensus 132 idp~~~~~~l~~~~~~-G~~i--~~~~~V~~i~~~~--~~~~v~t~~g-------~~-~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 132 LSPPQLCRALLAHAGI-RLTL--HFNTEITSLERDG--EGWQLLDANG-------EV-IAASVVVLANGAQAG 191 (381)
T ss_pred cChHHHHHHHHhccCC-CcEE--EeCCEEEEEEEcC--CeEEEEeCCC-------CE-EEcCEEEEcCCcccc
Confidence 3445666666666666 6554 8999999998754 5688877654 56 799999999998654
No 425
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.29 E-value=0.021 Score=51.15 Aligned_cols=34 Identities=35% Similarity=0.524 Sum_probs=32.2
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+.+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4689999999999999999999999999999987
No 426
>PRK05868 hypothetical protein; Validated
Probab=95.29 E-value=0.018 Score=51.16 Aligned_cols=33 Identities=33% Similarity=0.484 Sum_probs=31.4
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
++|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 579999999999999999999999999999987
No 427
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.27 E-value=0.028 Score=52.05 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCCcCCCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 1 MKEQAAGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 1 m~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
|.....-.+|.|||+|..|...|..|+..|++|+++|+++.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44434456899999999999999999999999999998763
No 428
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.26 E-value=0.023 Score=45.90 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 184 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+.+++|+|||+|.+|..-+..|.+.|.+|+++....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 567899999999999999999999999999997654
No 429
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.23 E-value=0.025 Score=49.51 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++|.|||.|..|+..|..|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 489999999999999999999999999999765
No 430
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.23 E-value=0.023 Score=45.80 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEec
Q 022182 183 PYGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (301)
Q Consensus 183 ~~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (301)
...+++|+|||+|..|...+..|.+.|.+|+++.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 356899999999999999999999999999999764
No 431
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.22 E-value=0.02 Score=50.09 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=29.7
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEec
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRS 218 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~ 218 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 5899999999999999999999999999997
No 432
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.025 Score=48.48 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
.+|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 433
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.14 E-value=0.036 Score=47.82 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|+|||+|..|...|..|.+.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3589999999999999999999999999999864
No 434
>PRK06753 hypothetical protein; Provisional
Probab=95.13 E-value=0.023 Score=50.47 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=30.9
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|++++|++
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999987
No 435
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.12 E-value=0.031 Score=48.08 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
+|+|||+|..|...|..|.+.|.+|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999843
No 436
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.11 E-value=0.023 Score=51.03 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=31.6
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
++|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 789999999999999999999999999999986
No 437
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.10 E-value=0.025 Score=42.38 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 10 VIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
++|+|+|+.+.+++..+...|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 68999999999999999999999999998753
No 438
>PRK07233 hypothetical protein; Provisional
Probab=95.07 E-value=0.023 Score=51.41 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=30.4
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 58999999999999999999999999999986
No 439
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=95.03 E-value=0.023 Score=45.44 Aligned_cols=32 Identities=38% Similarity=0.744 Sum_probs=29.6
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|..|+.+|..|.+.+.+|+++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 58999999999999999999999999997665
No 440
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.01 E-value=0.042 Score=47.51 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45689999999999999999999999999999875
No 441
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.00 E-value=0.026 Score=51.42 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=30.1
Q ss_pred CeEEEECCCcCHHHHHHHHHhcc--CeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHA--AKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g--~~v~~~~r~~ 219 (301)
++|+|||+|.+|+-+|..|++.| .+|++++.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 47999999999999999999987 7899999865
No 442
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.99 E-value=0.037 Score=47.66 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEec
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILER 38 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~ 38 (301)
+|+|||+|..|...|..|.+.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 799999999999999999999999999998
No 443
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.98 E-value=0.026 Score=50.08 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 69999999999999999999999999999864
No 444
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.98 E-value=0.04 Score=48.88 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
...+|+|||+|.+|..++..|...|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34689999999999999999999999999999764
No 445
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.97 E-value=0.024 Score=50.22 Aligned_cols=29 Identities=45% Similarity=0.655 Sum_probs=25.4
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEE
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVV 216 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~ 216 (301)
+|+|||+|..|+|+|..+++.|.+|.|+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 58999999999999999999999999993
No 446
>PLN02268 probable polyamine oxidase
Probab=94.96 E-value=0.025 Score=51.36 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=30.0
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+|+|||+|.+|+-+|..|.+.|.+|++++.++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999998754
No 447
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.95 E-value=0.028 Score=47.85 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=30.4
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999986
No 448
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.94 E-value=0.041 Score=41.24 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
..+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3589999999999999999999998 799999765
No 449
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.94 E-value=0.038 Score=49.74 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=36.8
Q ss_pred EeccCCCCCCCCCCCeEEEECCCcCHHHHHHHHHhc-c-CeEEEEEecC
Q 022182 173 IHSTQYKNGKPYGGKNVLVVGSGNSGMEIALDLANH-A-AKTSLVVRSP 219 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~-g-~~v~~~~r~~ 219 (301)
..+..|+.....+.-+|+|||+|.+|+-+|..|++. | .+|++++|+.
T Consensus 17 ~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 17 GWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 334555555544556899999999999999999985 8 4899999863
No 450
>PRK04148 hypothetical protein; Provisional
Probab=94.94 E-value=0.028 Score=41.82 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
..++++||.| .|...|..|.+.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 999999999999999999998774
No 451
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.94 E-value=0.027 Score=50.04 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=29.9
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58999999999999999999999999999864
No 452
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.029 Score=50.71 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=31.5
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+||+|+|+|..|+-.|.+|++.|.+||++++++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 589999999999999999999999999999986
No 453
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.93 E-value=0.025 Score=50.95 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=31.5
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 579999999999999999999999999999987
No 454
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.90 E-value=0.037 Score=47.19 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
.+|+|||+|..|...|..+++.|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3799999999999999999999999999997653
No 455
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.89 E-value=0.028 Score=50.24 Aligned_cols=38 Identities=34% Similarity=0.619 Sum_probs=33.1
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecCceEee
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPVHVLS 224 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~~~~~ 224 (301)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+..+.+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~ 40 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLE 40 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccccc
Confidence 57999999999999999999999999999998423333
No 456
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.036 Score=51.13 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 184 YGGKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 184 ~~~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+.+++|+|+|+|.+|+++|..|.+.|.+|+++.+++
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 346899999999999999999999999999998765
No 457
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.87 E-value=0.036 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
...+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999999876
No 458
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.81 E-value=0.043 Score=50.68 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+++|||+|..|+=.|..|++.|.+|++++|.+
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 579999999999999999999999999999875
No 459
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.80 E-value=0.046 Score=40.98 Aligned_cols=37 Identities=41% Similarity=0.629 Sum_probs=33.1
Q ss_pred CCCCCeEEEECCCcCHHHHHHHHHhccCe-EEEEEecC
Q 022182 183 PYGGKNVLVVGSGNSGMEIALDLANHAAK-TSLVVRSP 219 (301)
Q Consensus 183 ~~~~~~v~VvG~G~~g~e~a~~l~~~g~~-v~~~~r~~ 219 (301)
.+.+++++|+|+|-+|--++..|...|.+ ++++.|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45689999999999999999999999876 99998875
No 460
>PRK09126 hypothetical protein; Provisional
Probab=94.76 E-value=0.03 Score=50.08 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
-+|+|||+|.+|+-+|..|++.|.+|++++|.+
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 469999999999999999999999999999987
No 461
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.73 E-value=0.034 Score=50.33 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=34.8
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC----ceEee
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP----VHVLS 224 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~----~~~~~ 224 (301)
.++|+|||+|.+|+-.|..|.+.|.++++++|++ .|..+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 5899999999999999999999999999999975 45555
No 462
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.73 E-value=0.049 Score=48.78 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
...+|+|+|+|+.|+.+|..|...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 35689999999999999999999999999999765
No 463
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=94.72 E-value=0.074 Score=48.55 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.-+|+|||+|..|.-+|..|++.|.+|.++++++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3589999999999999999999999999999986
No 464
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=94.71 E-value=0.032 Score=51.83 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=30.9
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
-.|+|||||.+|+-+|..++++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 469999999999999999999999999999875
No 465
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=94.70 E-value=0.031 Score=45.00 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
...|+|||+|.+|+-+|..|++.|.+|.+++++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999874
No 466
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.70 E-value=0.061 Score=40.65 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.5
Q ss_pred CcEEEECC-ChHHHHHHHHHhhCCC--CeEEEecCC
Q 022182 8 VEVIMVGA-GTSGLATAACLSLQSI--PYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGa-G~aGl~~A~~l~~~g~--~v~vie~~~ 40 (301)
++|+|||+ |..|.++|..|...+. ++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 48999999 9999999999998865 799999875
No 467
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.69 E-value=0.032 Score=49.67 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=30.5
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|.-+|..|++.|.+|++++|++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 48999999999999999999999999999987
No 468
>PRK07045 putative monooxygenase; Reviewed
Probab=94.66 E-value=0.035 Score=49.59 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=31.8
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 4799999999999999999999999999999873
No 469
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.65 E-value=0.051 Score=46.94 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHhhCC--CCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQS--IPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~vie~~~~ 41 (301)
++|+|||+|..|.++|..|+..| .+++++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 37999999999999999999999 48999998653
No 470
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.63 E-value=0.045 Score=49.36 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
++|.|||.|..|+.+|..|++.|++|+.+|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5899999999999999999999999999998764
No 471
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.62 E-value=0.051 Score=46.63 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.+|.|||+|..|...|..|+..|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 472
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.60 E-value=0.035 Score=49.65 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=31.1
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 479999999999999999999999999999976
No 473
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.59 E-value=0.064 Score=46.24 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
++|.|||+|..|...|..|+..|. +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999876 899999754
No 474
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.58 E-value=0.07 Score=41.62 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCcEEEECCC-hHHHHHHHHHhhCCCCeEEEecC
Q 022182 6 AGVEVIMVGAG-TSGLATAACLSLQSIPYVILERE 39 (301)
Q Consensus 6 ~~~~vvIIGaG-~aGl~~A~~l~~~g~~v~vie~~ 39 (301)
..++++|||+| .+|..+|..|.++|.+++++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
No 475
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.57 E-value=0.028 Score=43.34 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=30.1
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|.|+|+|+.|.-+|..|+..|.+|+|+.|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998875
No 476
>PRK07588 hypothetical protein; Provisional
Probab=94.57 E-value=0.038 Score=49.43 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=30.7
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 69999999999999999999999999999986
No 477
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.57 E-value=0.18 Score=43.85 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeeeCcEEEEEEEcCCCCcE-EEEEeecCCCCceeEEEEeeCEEEEecCCCCCC
Q 022182 77 FVSRAQFIEHLDHYVSHFNIGPSIRYQRSVESASYDEATNMW-NVKASNLLSPGREIEEYYSGRFLVVASGETTNP 151 (301)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~V~~i~~~~~~~~~-~V~~~~~~~~~~~~~~~~~ad~vVlAtG~~~~p 151 (301)
+.+...+...+.+.+.+.+..+ ..+++|+.+..++ +.+ .|.+.+ .. +.||.||+|+|.++..
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~--~~~~~v~~i~~~~--~~~~~v~~~~--------g~-~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEI--IEHTEVQHIEIRG--EKVTAIVTPS--------GD-VQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEE--EccceEEEEEeeC--CEEEEEEcCC--------CE-EECCEEEEcCChhhhh
Confidence 3456777888888888888665 8899999998754 433 455433 35 8999999999986543
No 478
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.53 E-value=0.067 Score=38.72 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 10 VIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 10 vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
|+|+|.|..|..++..|.+.+.+++++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7899999999999999999888999999876
No 479
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.50 E-value=0.066 Score=46.72 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
.++|.|||+|..|...|..|.+.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999864
No 480
>PRK08013 oxidoreductase; Provisional
Probab=94.50 E-value=0.037 Score=49.69 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=31.3
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+|+|||+|.+|.-+|..|++.|.+|+++++++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 479999999999999999999999999999987
No 481
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.49 E-value=0.039 Score=51.70 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=30.7
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
-+|+|||||.+|+-+|..|+++|.+|+++++.+
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 469999999999999999999999999999864
No 482
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.49 E-value=0.064 Score=43.17 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.1
Q ss_pred CCcEEEECCChHHHHHHHHHhhCCC-CeEEEecCC
Q 022182 7 GVEVIMVGAGTSGLATAACLSLQSI-PYVILEREN 40 (301)
Q Consensus 7 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~vie~~~ 40 (301)
..+|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5689999999999999999999999 699999763
No 483
>PRK07208 hypothetical protein; Provisional
Probab=94.48 E-value=0.043 Score=50.52 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 186 GKNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 186 ~~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.++|+|||+|.+|+-+|..|.+.|.+|+++++++
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4689999999999999999999999999998865
No 484
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.47 E-value=0.037 Score=49.40 Aligned_cols=33 Identities=33% Similarity=0.631 Sum_probs=31.2
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 479999999999999999999999999999986
No 485
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.46 E-value=0.047 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+|.|||.|..|+.+|..|++.|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 486
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=94.46 E-value=0.038 Score=49.22 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=30.3
Q ss_pred eEEEECCCcCHHHHHHHHHhcc-CeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 219 (301)
.|+|||+|.+|+-+|..|++.| .+|++++|.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4899999999999999999999 9999999986
No 487
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.46 E-value=0.064 Score=47.04 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++|+|||+|..|...|..|.+.|++|++++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 479999999999999999999999999999864
No 488
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=94.44 E-value=0.045 Score=48.98 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.9
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999999873
No 489
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.43 E-value=0.059 Score=46.96 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 9 EVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 9 ~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
+|.|||+|..|.+.|..|.+.|.+|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999854
No 490
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.43 E-value=0.04 Score=51.68 Aligned_cols=33 Identities=42% Similarity=0.559 Sum_probs=30.7
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
-.|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 369999999999999999999999999999874
No 491
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.41 E-value=0.058 Score=46.67 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.7
Q ss_pred CcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 8 VEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 8 ~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
++|.|||+|..|...|..|++.|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999765
No 492
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.41 E-value=0.085 Score=42.47 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILEREN 40 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~ 40 (301)
..++++|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35789999999999999999999999999988653
No 493
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=94.39 E-value=0.042 Score=49.20 Aligned_cols=32 Identities=19% Similarity=0.538 Sum_probs=30.1
Q ss_pred eEEEECCCcCHHHHHHHHHhc--cCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANH--AAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~--g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++. |.+|+++++.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 699999999999999999999 99999999874
No 494
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.34 E-value=0.076 Score=44.19 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHhhCCCCeEEEecCCC
Q 022182 6 AGVEVIMVGAGTSGLATAACLSLQSIPYVILERENC 41 (301)
Q Consensus 6 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~vie~~~~ 41 (301)
+..+++|+|||+.+..+|..+...|++|+++|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 356999999999999999999999999999997764
No 495
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.31 E-value=0.048 Score=49.16 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=30.1
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 68999999999999999999999999999964
No 496
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.31 E-value=0.045 Score=49.37 Aligned_cols=32 Identities=31% Similarity=0.653 Sum_probs=30.0
Q ss_pred eEEEECCCcCHHHHHHHHHhcc-CeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHA-AKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g-~~v~~~~r~~ 219 (301)
+|+|||+|..|+-+|..|++.| .+|++++|++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999998 4999999987
No 497
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.31 E-value=0.045 Score=48.82 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.5
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecCc
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSPV 220 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~~ 220 (301)
-+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999999863
No 498
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=94.30 E-value=0.047 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=29.6
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999998853
No 499
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.28 E-value=0.049 Score=50.36 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=31.0
Q ss_pred CeEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 187 KNVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 187 ~~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
++|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 579999999999999999999999999999875
No 500
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.27 E-value=0.049 Score=48.94 Aligned_cols=32 Identities=41% Similarity=0.539 Sum_probs=30.5
Q ss_pred eEEEECCCcCHHHHHHHHHhccCeEEEEEecC
Q 022182 188 NVLVVGSGNSGMEIALDLANHAAKTSLVVRSP 219 (301)
Q Consensus 188 ~v~VvG~G~~g~e~a~~l~~~g~~v~~~~r~~ 219 (301)
+|+|||+|..|.-+|..|++.|.+|.++++.+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 69999999999999999999999999999975
Done!