BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022183
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 150/217 (69%), Gaps = 1/217 (0%)
Query: 84 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 143
D+ +PNV +++ T Q+R M T+IRD+ K +FVFY+DRLIRL++E L LPF +K
Sbjct: 26 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 85
Query: 144 QVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QL 202
+V TP Y GV F K+CGVSIVR+GESME+ LRA LI RD + +L
Sbjct: 86 EVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKL 145
Query: 203 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 262
IYEKLP DI ER V+LLDP+ AT S +AI++L+ GV E IIF+N+++AP+GI V
Sbjct: 146 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVF 205
Query: 263 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
K +P +++VT+ +D+ LN + ++PG+G+FGDRYFGT
Sbjct: 206 KEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 150/217 (69%), Gaps = 1/217 (0%)
Query: 84 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 143
D+ +PNV +++ T Q+R M T+IRD+ K +FVFY+DRLIRL++E L LPF +K
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 66
Query: 144 QVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QL 202
+V TP Y GV F K+CGVSIVR+GESME+ LRA LI RD + +L
Sbjct: 67 EVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKL 126
Query: 203 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 262
IYEKLP DI ER V+LLDP+ AT S +AI++L+ GV E IIF+N+++AP+GI V
Sbjct: 127 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVF 186
Query: 263 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
K +P +++VT+ +D+ LN + ++PG+G+FGDRYFGT
Sbjct: 187 KEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
MK+FVDTDAD RL+RR+ RD ERGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 149 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 208
Query: 61 PRGGDNHVAIDLIVQHIH 78
PRG DN VAI+LIVQHI
Sbjct: 209 PRGADNLVAINLIVQHIQ 226
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
MK+FVDTDAD RL+RR+ RD ERGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210
Query: 61 PRGGDNHVAIDLIVQHIH 78
PRG DN VAI+LIVQHI
Sbjct: 211 PRGADNLVAINLIVQHIQ 228
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 72/90 (80%), Gaps = 2/90 (2%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++++FVDTD+DVRL+RR+ RD V RGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 154 FHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVII 212
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQHDLCKIY 90
PRG DN VAI+LIVQHI L D+CK +
Sbjct: 213 PRGVDNMVAINLIVQHIQDILN-GDICKWH 241
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 2/212 (0%)
Query: 90 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPT 149
+PN++++ I+ T +RD+ S F + L+ +LP T K+V TP
Sbjct: 8 FPNLFILDHPL-IQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPL 66
Query: 150 GSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYEKLPN 209
+ V KKL V ++R+G M + L ++R D+ +LP
Sbjct: 67 VEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP- 125
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLK 269
D+ +R +L DP++ATG SA AI +L +GVP ++FL L++APEG+ P +K
Sbjct: 126 DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVK 185
Query: 270 IVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD 301
+ + +D L++ ++PGLG+ GDR FGT +
Sbjct: 186 LYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
Query: 107 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVS 166
T IRD+ +F D + L+ LP E ++ TP V KKL +
Sbjct: 17 TYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIP 76
Query: 167 IVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLAT 225
I+R+G M + + ++RD K + Y KLP+D+ ER +++DP+LAT
Sbjct: 77 ILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPMLAT 136
Query: 226 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRV 285
G SA AI L ++G I F+ LI+APEG+ V P + I + +D LN+ +
Sbjct: 137 GGSAVAAIDALKKRGA--KSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYI 194
Query: 286 IPGLGEFGDRYFGT 299
+PGLG+ GDR FGT
Sbjct: 195 VPGLGDAGDRLFGT 208
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 3/192 (1%)
Query: 109 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIV 168
+RD+ DF ++ + L L E V TP V KKL V+I+
Sbjct: 18 LRDKRTGPKDFRELAEEVAXLXAYEAXRDLELEETTVETPIAPARVKVLSGKKLALVAIL 77
Query: 169 RSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGN 227
R+G + ++RD ++ + Y KLP DI+ER LLDP LATG
Sbjct: 78 RAGLVXVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPXLATGG 137
Query: 228 SANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIP 287
SA+ A+ LL E+G + + +++APEG+ + K P ++V + ID LN+ ++P
Sbjct: 138 SASLALSLLKERGA--TGVKLXAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVP 195
Query: 288 GLGEFGDRYFGT 299
GLG+ GDR +GT
Sbjct: 196 GLGDAGDRIYGT 207
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 3/194 (1%)
Query: 107 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVS 166
T++RD+ +F + L+ HL E +V TP K + V
Sbjct: 29 TIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVP 88
Query: 167 IVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLAT 225
I+R+G M + + I+RD + + + Y KLP ++ V LLDP+LAT
Sbjct: 89 ILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLAT 148
Query: 226 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRV 285
G S+ +AI++L E G I + LI+APEG+ V K++ +KI + +D LN+ +
Sbjct: 149 GVSSIKAIEILKENGA--KKITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYI 206
Query: 286 IPGLGEFGDRYFGT 299
IPGLG+ GDR F T
Sbjct: 207 IPGLGDAGDRLFRT 220
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++K+FVD DAD R RR++RD +ERGR ++ V+ QY + VKP FV P+K+YADVI+
Sbjct: 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIV 184
Query: 61 PRGGDNHVAIDL 72
PRGG N VA+++
Sbjct: 185 PRGGQNPVALEM 196
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Query: 160 KKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLL 218
KK+ V I+R+G M + + ++R+ + + + Y +KL ++I ER L+
Sbjct: 69 KKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALI 128
Query: 219 LDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVA 278
+DP+LATG S I LL + G S I L L++APEGI + K P +++ T+ ID
Sbjct: 129 VDPMLATGGSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQG 186
Query: 279 LNEEFRVIPGLGEFGDRYFGT 299
LNE +IPGLG+ GD+ FGT
Sbjct: 187 LNEHGYIIPGLGDAGDKIFGT 207
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 4/173 (2%)
Query: 129 LVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGES-MENALRAXXXXXXX 187
++V L + EK+V T G+ +++ V I+R+G S +E AL+
Sbjct: 37 MLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVG 96
Query: 188 XXXLIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 247
+ + + Y +LP ++ + V++LDP+LATG + A++ ++ K P +
Sbjct: 97 FLGIKRNEETLESHIYYSRLP-ELKGKIVVILDPMLATGGTLEVALREIL-KHSP-LKVK 153
Query: 248 FLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300
++ I+APEG+ + ++F ++I +D LN++ +IPGLG+ GDR +
Sbjct: 154 SVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 16/218 (7%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
+YVI + + T +RD+ + +F RL R++ L + +V TP G
Sbjct: 3 LYVIDKPITLH-ILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVK 61
Query: 153 YTGVDFC--KKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQ--------L 202
GVD + ++I+R+ + L R +GK+ +
Sbjct: 62 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 121
Query: 203 IYEKLPNDISER--HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHC 260
Y+K+P DI + +V++ DP++AT ++ + ++ +++ I +++IS+ G++
Sbjct: 122 YYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKAN--PKRIYIVSIISSEYGVNK 178
Query: 261 VCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFG 298
+ ++P + + T ID LN + ++PGLG+ GDR FG
Sbjct: 179 ILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>pdb|1UFR|A Chain A, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|B Chain B, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|C Chain C, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|D Chain D, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
Length = 181
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 201 QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVP 242
Q+ ++P D++ + ++L+D VL TG +A A+ LI+ G P
Sbjct: 84 QVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRP 125
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 216 VLLLDPVLATGNSANQAIQLLIEKG---VPESHIIFLNLISAPEGIHCVC-KRFPSLKIV 271
V+L+D VLATG +A +QL+ V I+ + + A E IH R+ +K +
Sbjct: 141 VVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHSTANSRYKDIKFI 200
Query: 272 TSEIDVALNEE 282
+ D AL EE
Sbjct: 201 SLLSDDALTEE 211
>pdb|1A4X|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A4X|B Chain B, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Hexameric Form
pdb|1A3C|A Chain A, Pyrr, The Bacillus Subtilis Pyrimidine Biosynthetic Operon
Repressor, Dimeric Form
Length = 181
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
+P DI+++ V+L+D VL TG + + L++ G P S
Sbjct: 92 IPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSS 129
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 206 KLPN-DISERHVLLLDPVLATGNSANQAIQLLIEKG-----VPESHIIFLN 250
K+PN D++ + +L++D +++TG + ++ LL EKG V H +F+N
Sbjct: 197 KVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVN 247
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 206 KLPN-DISERHVLLLDPVLATGNSANQAIQLLIEKG-----VPESHIIFLN 250
K+PN D++ + +L++D +++TG + ++ LL EKG V H +F+N
Sbjct: 195 KVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVN 245
>pdb|1NON|A Chain A, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus
pdb|1NON|B Chain B, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus
pdb|1NON|C Chain C, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus
pdb|1NON|D Chain D, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus
pdb|1XZ8|A Chain A, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus, Nucleotide-Bound Form
pdb|1XZ8|B Chain B, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus, Nucleotide-Bound Form
pdb|1XZN|A Chain A, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus, Sulfate-Bound Form
pdb|1XZN|B Chain B, Pyrr, The Regulator Of The Pyrimidine Biosynthetic Operon
In Bacillus Caldolyticus, Sulfate-Bound Form
pdb|2IGB|A Chain A, Crystal Structure Of Pyrr, The Regulator Of The Pyrimidine
Biosynthetic Operon In Bacillus Caldolyticus, Ump-Bound
Form
pdb|2IGB|B Chain B, Crystal Structure Of Pyrr, The Regulator Of The Pyrimidine
Biosynthetic Operon In Bacillus Caldolyticus, Ump-Bound
Form
Length = 179
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVP 242
+P ++ER+V+L+D VL TG + A+ +++ G P
Sbjct: 91 VPFPVTERNVILVDDVLFTGRTVRAAMDAVMDLGRP 126
>pdb|3OHP|A Chain A, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|B Chain B, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|C Chain C, Crystal Structure Of Hgprt From Vibrio Cholerae
pdb|3OHP|D Chain D, Crystal Structure Of Hgprt From Vibrio Cholerae
Length = 177
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 203 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE------ 256
I + L +DI + VLL++ ++ TGN+ N+ ++L + P+S I L+ P
Sbjct: 81 ILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALRE-PKS-IRICTLLDKPTRREVDV 138
Query: 257 GIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGE 291
++ V P +V ID A +++R +P +G+
Sbjct: 139 EVNWVGFEIPDEFVVGVGIDYA--QKYRHLPYIGK 171
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 48 FVLPSKKYA-----DVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCK--IYPNVYVIQSTF 100
F LPS+ YA D++ GGD +DLI + +H K + C Y ++ S
Sbjct: 333 FWLPSENYAENDFYDLVRTIGGDLVEKVDLIDKFVHPKTHKTSHCYRITYRHMERTLSQR 392
Query: 101 QIRGMHTLIRDRGIS 115
++R +H +++ +
Sbjct: 393 EVRHIHQALQEAAVQ 407
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 205 EKLPNDISERH--------VLLLDPVLATGNSANQAIQLLIEKG---VPESHIIFLNLIS 253
E P ++ RH V+L+D VLATG +A +QL+ G V I+ + +
Sbjct: 123 EAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQLVEASGAEVVEMVSILTIPFLK 182
Query: 254 APEGIHCVC 262
A E IH
Sbjct: 183 AAERIHSTA 191
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKG 240
D +R V ++D +++TG + A++LL E+G
Sbjct: 202 DAKDRDVFIVDDIISTGGTMATAVKLLKEQG 232
>pdb|1S1H|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
From Yeast Obtained By Docking Atomic Models For Rna
And Protein Components Into A 11.7 A Cryo-Em Map. This
File, 1s1h, Contains 40s Subunit. The 60s Ribosomal
Subunit Is In File 1s1i
Length = 100
Score = 27.7 bits (60), Expect = 8.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 4 KIFVDTDADVRLARRIRRDTVERGRDVDSV 33
K ++D +A V++ +RI + T+E G DV+ V
Sbjct: 68 KRYIDLEAPVQIVKRITQITIEPGVDVEVV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,995,392
Number of Sequences: 62578
Number of extensions: 371841
Number of successful extensions: 784
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 27
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)