Query 022183
Match_columns 301
No_of_seqs 243 out of 2003
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 2.5E-69 5.5E-74 472.7 22.8 207 91-300 2-210 (210)
2 PF14681 UPRTase: Uracil phosp 100.0 1.6E-65 3.4E-70 456.4 22.5 204 95-299 1-207 (207)
3 PLN02541 uracil phosphoribosyl 100.0 1.9E-63 4E-68 450.5 24.6 207 92-300 33-244 (244)
4 TIGR01091 upp uracil phosphori 100.0 1.4E-60 3E-65 424.6 25.6 205 92-300 1-207 (207)
5 PRK00129 upp uracil phosphorib 100.0 2.2E-59 4.7E-64 417.5 25.6 206 91-300 2-209 (209)
6 KOG4203 Armadillo/beta-Catenin 100.0 1.3E-55 2.8E-60 433.0 10.4 299 1-300 174-473 (473)
7 KOG1017 Predicted uracil phosp 100.0 4.9E-44 1.1E-48 307.5 16.3 203 89-300 64-267 (267)
8 COG0572 Udk Uridine kinase [Nu 99.9 8.2E-22 1.8E-26 175.2 6.8 84 1-84 128-211 (218)
9 PTZ00301 uridine kinase; Provi 99.7 3.1E-18 6.8E-23 152.8 8.2 83 1-83 127-209 (210)
10 cd02029 PRK_like Phosphoribulo 99.6 2.4E-16 5.2E-21 144.5 5.5 61 1-62 141-201 (277)
11 PF00485 PRK: Phosphoribulokin 99.6 4.9E-16 1.1E-20 136.5 4.9 67 1-68 127-193 (194)
12 PLN02318 phosphoribulokinase/u 99.6 5.3E-16 1.1E-20 155.1 5.5 87 1-87 177-274 (656)
13 PRK15453 phosphoribulokinase; 99.6 3E-15 6.6E-20 138.2 5.3 61 1-62 147-207 (290)
14 PLN02369 ribose-phosphate pyro 99.5 1.1E-12 2.5E-17 123.1 14.2 114 160-277 151-266 (302)
15 PRK05480 uridine/cytidine kina 99.4 4.1E-13 9E-18 119.0 7.6 83 1-83 126-208 (209)
16 TIGR01203 HGPRTase hypoxanthin 99.4 6.6E-12 1.4E-16 108.2 11.8 96 161-258 27-127 (166)
17 cd02023 UMPK Uridine monophosp 99.3 3.1E-12 6.6E-17 112.4 7.6 79 1-79 119-197 (198)
18 TIGR00235 udk uridine kinase. 99.3 3.2E-12 6.9E-17 113.4 7.8 81 1-81 126-206 (207)
19 PRK03092 ribose-phosphate pyro 99.3 6E-11 1.3E-15 111.6 14.5 113 160-275 148-263 (304)
20 cd02025 PanK Pantothenate kina 99.3 2.3E-12 4.9E-17 115.9 3.8 67 1-67 129-214 (220)
21 PRK05205 bifunctional pyrimidi 99.3 1.8E-11 4E-16 106.3 9.2 141 115-278 8-166 (176)
22 PLN02348 phosphoribulokinase 99.2 1.8E-11 4E-16 117.8 5.7 61 1-62 183-243 (395)
23 cd02028 UMPK_like Uridine mono 99.2 1.8E-11 3.9E-16 106.6 4.4 59 1-61 118-178 (179)
24 cd02026 PRK Phosphoribulokinas 99.1 1.4E-10 3E-15 107.6 5.2 61 1-62 116-176 (273)
25 COG2065 PyrR Pyrimidine operon 99.0 1.6E-09 3.5E-14 91.8 9.2 140 115-277 8-169 (179)
26 PRK01259 ribose-phosphate pyro 99.0 5.6E-09 1.2E-13 98.5 13.2 114 160-278 158-273 (309)
27 PRK15423 hypoxanthine phosphor 99.0 1.5E-08 3.2E-13 88.4 14.6 120 115-257 10-134 (178)
28 PRK07429 phosphoribulokinase; 99.0 5.3E-10 1.2E-14 106.2 5.7 62 1-63 125-186 (327)
29 PRK02812 ribose-phosphate pyro 99.0 6.6E-09 1.4E-13 98.8 12.8 109 160-273 179-289 (330)
30 PTZ00271 hypoxanthine-guanine 98.9 1.1E-08 2.5E-13 91.3 12.1 126 114-258 28-161 (211)
31 PRK06827 phosphoribosylpyropho 98.9 1.9E-08 4.1E-13 97.3 14.2 111 160-273 207-326 (382)
32 PRK09162 hypoxanthine-guanine 98.9 4.7E-08 1E-12 85.4 14.6 121 111-256 14-138 (181)
33 TIGR01251 ribP_PPkin ribose-ph 98.9 3.1E-08 6.7E-13 93.5 14.1 112 160-275 159-272 (308)
34 TIGR00554 panK_bact pantothena 98.9 1.8E-09 4E-14 100.9 4.3 67 1-67 197-282 (290)
35 PF00156 Pribosyltran: Phospho 98.9 1.1E-08 2.5E-13 82.7 8.4 87 164-252 31-125 (125)
36 PTZ00149 hypoxanthine phosphor 98.8 3.1E-08 6.8E-13 90.1 11.0 119 113-257 57-192 (241)
37 PLN02238 hypoxanthine phosphor 98.8 4.9E-08 1.1E-12 85.9 11.5 96 161-258 36-140 (189)
38 PRK00934 ribose-phosphate pyro 98.8 7.8E-08 1.7E-12 89.8 13.4 107 161-273 155-263 (285)
39 PRK05439 pantothenate kinase; 98.7 1.3E-08 2.9E-13 95.9 5.9 68 1-68 217-303 (311)
40 COG0634 Hpt Hypoxanthine-guani 98.7 1.3E-07 2.9E-12 81.3 11.1 97 160-258 35-136 (178)
41 PRK04923 ribose-phosphate pyro 98.7 3.1E-07 6.8E-12 87.0 12.7 101 160-264 166-268 (319)
42 COG1926 Predicted phosphoribos 98.7 8E-08 1.7E-12 84.8 8.0 69 205-277 116-184 (220)
43 PRK02269 ribose-phosphate pyro 98.6 3.9E-07 8.5E-12 86.4 12.9 102 160-264 165-268 (320)
44 PRK02458 ribose-phosphate pyro 98.6 4.9E-07 1.1E-11 85.9 13.0 99 160-264 169-269 (323)
45 TIGR01090 apt adenine phosphor 98.6 3.1E-07 6.8E-12 79.2 10.6 103 163-273 49-166 (169)
46 PRK07199 phosphoribosylpyropho 98.5 1.8E-06 3.8E-11 81.3 14.1 101 160-264 160-262 (301)
47 PRK02304 adenine phosphoribosy 98.5 1E-06 2.2E-11 76.4 11.1 96 162-262 53-163 (175)
48 COG0462 PrsA Phosphoribosylpyr 98.5 1.2E-06 2.5E-11 82.3 12.1 132 162-299 165-306 (314)
49 PRK06696 uridine kinase; Valid 98.5 1.7E-07 3.6E-12 84.2 5.2 63 1-64 147-211 (223)
50 PRK00553 ribose-phosphate pyro 98.5 2.8E-06 6.1E-11 81.0 13.4 100 160-264 168-269 (332)
51 PRK00455 pyrE orotate phosphor 98.4 4.1E-06 8.9E-11 74.3 11.8 102 163-272 67-169 (202)
52 PRK02277 orotate phosphoribosy 98.3 4.6E-06 1E-10 74.0 10.8 95 163-261 88-185 (200)
53 PLN02293 adenine phosphoribosy 98.3 6.3E-06 1.4E-10 72.4 11.5 94 163-262 65-174 (187)
54 PRK08233 hypothetical protein; 98.3 1.4E-06 3E-11 74.7 6.6 80 1-84 98-178 (182)
55 TIGR00336 pyrE orotate phospho 98.3 1.1E-05 2.3E-10 70.0 12.1 106 162-272 56-166 (173)
56 TIGR01367 pyrE_Therm orotate p 98.3 7.2E-06 1.6E-10 72.1 10.3 89 162-258 60-148 (187)
57 PF14572 Pribosyl_synth: Phosp 98.2 1.7E-06 3.7E-11 75.4 5.7 70 206-277 76-147 (184)
58 PRK09270 nucleoside triphospha 98.2 1.5E-06 3.2E-11 78.4 5.3 64 1-66 161-224 (229)
59 PTZ00145 phosphoribosylpyropho 98.2 2E-05 4.3E-10 77.4 12.8 99 162-264 281-386 (439)
60 PRK09177 xanthine-guanine phos 98.2 1.2E-05 2.6E-10 68.6 9.3 88 162-258 33-122 (156)
61 PRK13811 orotate phosphoribosy 98.1 4.2E-05 9E-10 66.2 11.8 100 163-271 59-159 (170)
62 PRK07322 adenine phosphoribosy 98.1 1.6E-05 3.5E-10 69.2 8.9 94 163-261 55-166 (178)
63 PRK13812 orotate phosphoribosy 98.1 5.4E-05 1.2E-09 65.9 12.1 102 162-272 60-163 (176)
64 PRK08558 adenine phosphoribosy 98.0 6.5E-05 1.4E-09 68.5 11.8 99 162-265 113-227 (238)
65 PRK06031 phosphoribosyltransfe 98.0 9.3E-05 2E-09 67.2 11.5 102 163-266 87-206 (233)
66 PLN02297 ribose-phosphate pyro 97.9 3E-05 6.4E-10 73.7 8.1 57 206-264 223-281 (326)
67 COG2236 Predicted phosphoribos 97.9 5.4E-05 1.2E-09 66.7 8.4 83 161-243 30-117 (192)
68 COG0856 Orotate phosphoribosyl 97.9 4.9E-05 1.1E-09 65.4 7.5 97 163-262 89-187 (203)
69 PRK12560 adenine phosphoribosy 97.9 0.00017 3.7E-09 63.3 11.3 54 210-265 111-166 (187)
70 PRK13810 orotate phosphoribosy 97.8 0.00033 7.2E-09 61.6 12.2 99 164-272 77-178 (187)
71 PRK05793 amidophosphoribosyltr 97.8 0.0001 2.2E-09 73.5 9.9 84 163-250 291-388 (469)
72 PRK13809 orotate phosphoribosy 97.8 0.00028 6.1E-09 63.0 11.5 94 163-263 70-167 (206)
73 PRK08525 amidophosphoribosyltr 97.7 0.00016 3.4E-09 71.7 10.0 106 163-274 278-400 (445)
74 PLN02440 amidophosphoribosyltr 97.7 0.00016 3.4E-09 72.4 9.6 86 163-251 278-376 (479)
75 TIGR00201 comF comF family pro 97.7 6.5E-05 1.4E-09 65.9 5.5 40 210-251 149-188 (190)
76 PRK09123 amidophosphoribosyltr 97.7 0.0003 6.4E-09 70.4 10.5 85 163-250 298-395 (479)
77 KOG1448 Ribose-phosphate pyrop 97.7 0.00013 2.8E-09 67.7 7.2 93 204-298 205-305 (316)
78 TIGR01744 XPRTase xanthine pho 97.6 0.001 2.3E-08 58.6 12.2 95 164-263 54-167 (191)
79 COG0503 Apt Adenine/guanine ph 97.6 0.0004 8.7E-09 60.6 9.5 86 163-254 56-154 (179)
80 KOG3367 Hypoxanthine-guanine p 97.6 0.00022 4.8E-09 61.3 7.5 94 160-255 60-165 (216)
81 PRK11595 DNA utilization prote 97.6 0.00012 2.6E-09 66.1 6.0 43 209-253 183-225 (227)
82 PRK09219 xanthine phosphoribos 97.6 0.0015 3.4E-08 57.5 12.7 96 163-263 53-167 (189)
83 cd02020 CMPK Cytidine monophos 97.5 0.00015 3.3E-09 59.6 5.6 62 1-62 83-146 (147)
84 COG0461 PyrE Orotate phosphori 97.5 0.0015 3.3E-08 58.0 12.0 93 165-265 66-162 (201)
85 COG1040 ComFC Predicted amidop 97.5 0.00018 3.9E-09 65.1 5.9 47 207-255 177-224 (225)
86 PRK08341 amidophosphoribosyltr 97.5 0.00052 1.1E-08 68.0 9.5 84 163-250 274-369 (442)
87 PRK09246 amidophosphoribosyltr 97.5 0.00044 9.5E-09 69.6 8.7 86 163-251 296-394 (501)
88 TIGR01743 purR_Bsub pur operon 97.4 0.0019 4.1E-08 59.9 11.8 94 163-261 131-240 (268)
89 PRK09213 pur operon repressor; 97.3 0.0034 7.3E-08 58.3 11.5 94 163-261 133-242 (271)
90 KOG1712 Adenine phosphoribosyl 97.2 0.00037 8E-09 59.3 4.3 48 212-261 121-170 (183)
91 PRK07349 amidophosphoribosyltr 97.2 0.0018 3.9E-08 65.1 9.8 79 163-243 315-407 (500)
92 PRK07272 amidophosphoribosyltr 97.1 0.0022 4.9E-08 64.2 8.9 43 207-251 344-386 (484)
93 TIGR01134 purF amidophosphorib 97.0 0.0025 5.5E-08 63.2 8.4 41 207-249 332-372 (442)
94 PRK05500 bifunctional orotidin 97.0 0.008 1.7E-07 60.1 11.7 93 163-263 347-442 (477)
95 PRK06781 amidophosphoribosyltr 96.9 0.0034 7.3E-08 62.7 8.6 87 163-250 286-385 (471)
96 PRK07847 amidophosphoribosyltr 96.9 0.0037 8E-08 63.0 8.9 39 205-243 359-397 (510)
97 PRK07631 amidophosphoribosyltr 96.9 0.0032 6.9E-08 62.9 8.4 85 163-249 286-382 (475)
98 PRK14734 coaE dephospho-CoA ki 96.9 0.0024 5.3E-08 56.5 6.8 55 1-65 126-180 (200)
99 PRK14732 coaE dephospho-CoA ki 96.8 0.0026 5.6E-08 56.2 6.0 55 1-65 122-176 (196)
100 PRK14730 coaE dephospho-CoA ki 96.8 0.0031 6.7E-08 55.6 6.3 54 1-64 126-179 (195)
101 PRK13477 bifunctional pantoate 96.6 0.0068 1.5E-07 61.1 7.7 76 2-78 422-502 (512)
102 PF15609 PRTase_2: Phosphoribo 96.5 0.1 2.2E-06 46.0 13.8 109 161-272 54-183 (191)
103 PRK06388 amidophosphoribosyltr 96.5 0.017 3.6E-07 57.9 9.9 45 206-250 349-393 (474)
104 PRK00023 cmk cytidylate kinase 96.4 0.0097 2.1E-07 53.6 7.0 79 2-80 141-222 (225)
105 TIGR00152 dephospho-CoA kinase 96.1 0.014 3.1E-07 50.6 6.0 55 1-65 124-178 (188)
106 COG3954 PrkB Phosphoribulokina 95.7 0.013 2.9E-07 51.8 4.3 60 2-62 148-207 (289)
107 PRK04182 cytidylate kinase; Pr 95.6 0.057 1.2E-06 45.7 7.9 75 2-80 93-174 (180)
108 TIGR02173 cyt_kin_arch cytidyl 95.5 0.045 9.8E-07 46.0 6.9 72 1-76 92-169 (171)
109 PRK01184 hypothetical protein; 95.5 0.052 1.1E-06 46.7 7.1 59 3-65 106-164 (184)
110 PRK03333 coaE dephospho-CoA ki 95.4 0.055 1.2E-06 52.9 7.7 108 1-131 124-237 (395)
111 KOG0572 Glutamine phosphoribos 95.1 0.0086 1.9E-07 57.6 1.2 79 169-250 312-393 (474)
112 PLN02422 dephospho-CoA kinase 95.0 0.087 1.9E-06 47.9 7.3 55 1-65 126-180 (232)
113 PTZ00451 dephospho-CoA kinase; 94.6 0.097 2.1E-06 47.9 6.7 53 1-63 137-189 (244)
114 PRK14731 coaE dephospho-CoA ki 94.6 0.12 2.6E-06 45.9 7.0 55 1-65 134-188 (208)
115 PRK14733 coaE dephospho-CoA ki 94.4 0.18 3.9E-06 44.9 7.7 54 1-64 129-182 (204)
116 PRK00081 coaE dephospho-CoA ki 94.2 0.13 2.7E-06 45.1 6.3 55 1-65 125-179 (194)
117 cd02030 NDUO42 NADH:Ubiquinone 94.2 0.071 1.5E-06 47.6 4.7 72 2-79 144-217 (219)
118 PRK09518 bifunctional cytidyla 94.1 0.13 2.7E-06 54.2 7.1 77 2-82 156-234 (712)
119 TIGR00017 cmk cytidylate kinas 93.9 0.22 4.7E-06 44.7 7.2 75 2-79 139-215 (217)
120 PRK11860 bifunctional 3-phosph 93.7 0.15 3.3E-06 53.1 6.7 75 2-80 575-652 (661)
121 PRK05057 aroK shikimate kinase 93.2 0.36 7.9E-06 41.4 7.3 56 2-66 98-157 (172)
122 COG0034 PurF Glutamine phospho 92.4 0.16 3.4E-06 50.2 4.4 50 201-250 336-385 (470)
123 PF01712 dNK: Deoxynucleoside 92.3 0.056 1.2E-06 45.3 1.0 58 2-64 69-128 (146)
124 PRK13946 shikimate kinase; Pro 91.8 0.62 1.3E-05 40.3 6.9 73 2-82 104-179 (184)
125 COG0237 CoaE Dephospho-CoA kin 91.5 0.5 1.1E-05 42.0 6.2 58 1-68 124-181 (201)
126 PRK13949 shikimate kinase; Pro 91.5 0.32 7E-06 41.7 4.7 69 2-79 95-167 (169)
127 PRK00131 aroK shikimate kinase 91.2 0.83 1.8E-05 38.2 7.0 72 2-80 98-172 (175)
128 COG0703 AroK Shikimate kinase 90.9 1 2.2E-05 39.1 7.2 69 3-79 97-168 (172)
129 PRK08118 topology modulation p 90.7 0.28 6.1E-06 42.0 3.6 59 1-59 79-152 (167)
130 cd01673 dNK Deoxyribonucleosid 90.6 0.28 6E-06 42.4 3.6 57 1-62 125-184 (193)
131 cd01672 TMPK Thymidine monopho 89.5 0.86 1.9E-05 38.8 5.8 70 2-79 127-196 (200)
132 PRK13974 thymidylate kinase; P 89.2 0.98 2.1E-05 40.0 6.0 44 2-49 136-179 (212)
133 PRK00625 shikimate kinase; Pro 89.0 1.7 3.6E-05 37.6 7.1 54 2-63 97-150 (173)
134 PF02224 Cytidylate_kin: Cytid 88.9 0.89 1.9E-05 38.9 5.2 73 2-77 81-155 (157)
135 PRK00698 tmk thymidylate kinas 88.8 1.2 2.6E-05 38.5 6.2 75 2-80 129-203 (205)
136 TIGR03574 selen_PSTK L-seryl-t 88.5 1.4 3E-05 39.9 6.7 104 3-137 98-205 (249)
137 COG1102 Cmk Cytidylate kinase 88.5 1.7 3.7E-05 37.6 6.7 66 2-71 92-163 (179)
138 COG0283 Cmk Cytidylate kinase 88.4 1.5 3.2E-05 39.6 6.5 76 2-80 139-216 (222)
139 PRK03731 aroL shikimate kinase 88.1 1.6 3.6E-05 36.7 6.5 69 2-81 95-168 (171)
140 KOG1503 Phosphoribosylpyrophos 87.7 0.86 1.9E-05 41.6 4.6 67 210-279 244-313 (354)
141 PRK13947 shikimate kinase; Pro 87.5 2.4 5.2E-05 35.6 7.1 66 2-79 95-163 (171)
142 PRK07261 topology modulation p 87.3 0.21 4.5E-06 42.9 0.4 36 1-36 79-114 (171)
143 TIGR03263 guanyl_kin guanylate 87.1 1.7 3.8E-05 36.8 6.1 65 3-81 114-178 (180)
144 PRK06217 hypothetical protein; 87.0 2.3 4.9E-05 36.6 6.8 28 1-28 84-111 (183)
145 PRK04040 adenylate kinase; Pro 86.7 1.6 3.5E-05 38.1 5.8 74 2-76 112-186 (188)
146 COG1428 Deoxynucleoside kinase 86.4 1.1 2.4E-05 40.2 4.6 76 2-82 128-211 (216)
147 PRK13975 thymidylate kinase; P 85.6 1.7 3.6E-05 37.4 5.3 73 2-80 115-191 (196)
148 COG0125 Tmk Thymidylate kinase 85.4 2.3 4.9E-05 38.0 6.0 60 2-65 129-189 (208)
149 PRK08154 anaerobic benzoate ca 84.2 3.2 7E-05 39.1 6.9 68 3-80 229-302 (309)
150 PRK12269 bifunctional cytidyla 84.2 2.7 5.8E-05 45.3 6.9 80 2-85 208-287 (863)
151 PRK06762 hypothetical protein; 83.8 4.3 9.4E-05 33.9 6.9 36 3-39 98-133 (166)
152 PRK07933 thymidylate kinase; V 82.8 2.6 5.6E-05 37.5 5.3 74 2-80 134-210 (213)
153 PRK14737 gmk guanylate kinase; 82.7 3.6 7.8E-05 35.8 6.1 64 3-77 118-182 (186)
154 COG0194 Gmk Guanylate kinase [ 81.9 4.3 9.4E-05 35.8 6.2 63 3-75 116-178 (191)
155 TIGR01360 aden_kin_iso1 adenyl 81.4 3.8 8.2E-05 34.7 5.7 47 2-48 108-159 (188)
156 cd00464 SK Shikimate kinase (S 81.3 3.4 7.4E-05 33.8 5.2 54 2-63 93-148 (154)
157 PRK13973 thymidylate kinase; P 81.2 4.1 8.8E-05 36.1 6.0 22 1-22 129-150 (213)
158 PRK08356 hypothetical protein; 81.2 4.7 0.0001 35.0 6.3 59 2-63 116-176 (195)
159 PRK13976 thymidylate kinase; P 80.7 2.9 6.4E-05 37.2 4.9 53 2-62 126-178 (209)
160 PF02223 Thymidylate_kin: Thym 79.3 4.8 0.0001 34.4 5.6 56 2-62 120-175 (186)
161 PF15610 PRTase_3: PRTase ComF 79.3 3.6 7.9E-05 38.2 5.0 39 203-242 129-167 (274)
162 PRK00300 gmk guanylate kinase; 78.7 6.1 0.00013 34.2 6.2 66 3-82 118-183 (205)
163 PLN02200 adenylate kinase fami 78.0 5.9 0.00013 35.8 6.1 22 2-23 147-168 (234)
164 TIGR02322 phosphon_PhnN phosph 77.9 7.7 0.00017 32.8 6.5 62 3-81 113-176 (179)
165 TIGR01359 UMP_CMP_kin_fam UMP- 77.2 9.8 0.00021 32.2 7.0 24 1-24 104-127 (183)
166 PRK02496 adk adenylate kinase; 77.1 5.1 0.00011 34.2 5.2 20 2-21 109-128 (184)
167 PLN02924 thymidylate kinase 77.0 5 0.00011 36.0 5.2 68 2-80 137-204 (220)
168 PF00625 Guanylate_kin: Guanyl 77.0 7.4 0.00016 33.3 6.2 63 3-80 116-179 (183)
169 PRK14531 adenylate kinase; Pro 76.4 5.8 0.00013 34.1 5.3 20 2-21 109-128 (183)
170 PRK10078 ribose 1,5-bisphospho 76.2 10 0.00022 32.5 6.9 61 4-82 114-175 (186)
171 TIGR00041 DTMP_kinase thymidyl 75.4 7.3 0.00016 33.4 5.7 57 2-63 129-185 (195)
172 PRK13808 adenylate kinase; Pro 75.0 7.1 0.00015 37.5 6.0 21 1-21 107-127 (333)
173 smart00072 GuKc Guanylate kina 73.5 11 0.00023 32.4 6.3 65 3-77 116-180 (184)
174 PF01202 SKI: Shikimate kinase 72.9 13 0.00028 31.1 6.5 68 3-78 87-158 (158)
175 PRK05541 adenylylsulfate kinas 72.6 1.8 3.8E-05 36.8 1.1 68 3-80 104-173 (176)
176 PRK14527 adenylate kinase; Pro 72.3 9.1 0.0002 33.0 5.6 22 2-23 113-134 (191)
177 PF01488 Shikimate_DH: Shikima 71.3 19 0.00041 29.4 7.0 58 210-275 9-66 (135)
178 PHA03132 thymidine kinase; Pro 71.0 2.5 5.3E-05 43.5 1.9 72 2-88 403-475 (580)
179 PRK02812 ribose-phosphate pyro 67.7 65 0.0014 30.8 10.7 86 160-252 20-109 (330)
180 PRK02269 ribose-phosphate pyro 65.2 87 0.0019 29.8 11.0 85 161-252 5-93 (320)
181 PRK05416 glmZ(sRNA)-inactivati 64.5 18 0.00039 33.9 6.1 65 4-77 89-158 (288)
182 PRK03846 adenylylsulfate kinas 64.2 3.6 7.9E-05 35.8 1.4 66 4-78 125-191 (198)
183 PRK14528 adenylate kinase; Pro 63.6 16 0.00034 31.6 5.2 23 1-23 108-130 (186)
184 PRK14530 adenylate kinase; Pro 62.5 19 0.00042 31.6 5.7 22 1-22 106-127 (215)
185 PF08433 KTI12: Chromatin asso 61.2 33 0.00071 31.8 7.2 106 3-138 101-210 (270)
186 PLN02842 nucleotide kinase 61.1 29 0.00063 35.2 7.3 37 212-250 356-393 (505)
187 PF13793 Pribosyltran_N: N-ter 60.5 87 0.0019 25.1 9.1 77 169-251 7-87 (116)
188 KOG3220 Similar to bacterial d 59.7 34 0.00074 30.8 6.6 55 3-67 128-182 (225)
189 PF03668 ATP_bind_2: P-loop AT 59.5 17 0.00037 34.1 4.9 58 4-70 85-146 (284)
190 PF00919 UPF0004: Uncharacteri 59.5 24 0.00051 27.6 5.1 63 210-273 33-98 (98)
191 TIGR01251 ribP_PPkin ribose-ph 58.5 1.3E+02 0.0027 28.4 10.8 78 169-252 7-89 (308)
192 KOG3079 Uridylate kinase/adeny 57.8 18 0.0004 31.9 4.5 35 2-36 114-150 (195)
193 COG0379 NadA Quinolinate synth 55.3 36 0.00079 32.4 6.3 97 160-280 91-220 (324)
194 PRK14021 bifunctional shikimat 54.5 36 0.00078 34.8 6.8 67 3-79 105-176 (542)
195 PLN02297 ribose-phosphate pyro 54.3 2E+02 0.0044 27.5 12.1 90 159-252 14-105 (326)
196 smart00450 RHOD Rhodanese Homo 54.2 30 0.00066 25.1 4.8 45 212-266 55-99 (100)
197 PRK00934 ribose-phosphate pyro 53.9 1.2E+02 0.0025 28.3 9.6 78 169-252 6-86 (285)
198 PF09960 DUF2194: Uncharacteri 50.7 46 0.00099 34.5 6.8 30 252-281 404-433 (585)
199 PF01555 N6_N4_Mtase: DNA meth 49.7 12 0.00026 32.3 2.2 19 216-234 193-211 (231)
200 PRK13948 shikimate kinase; Pro 48.3 71 0.0015 27.7 6.8 67 3-79 105-175 (182)
201 PTZ00145 phosphoribosylpyropho 48.3 1.3E+02 0.0028 30.1 9.3 85 161-252 119-207 (439)
202 PRK04923 ribose-phosphate pyro 48.2 2.4E+02 0.0052 26.8 10.9 78 169-252 13-94 (319)
203 PRK06827 phosphoribosylpyropho 47.9 2E+02 0.0044 28.1 10.5 85 161-252 8-131 (382)
204 PF11181 YflT: Heat induced st 47.4 29 0.00064 27.1 3.9 41 223-265 6-46 (103)
205 PLN02469 hydroxyacylglutathion 47.0 80 0.0017 28.9 7.3 58 213-276 22-81 (258)
206 cd01428 ADK Adenylate kinase ( 46.9 30 0.00065 29.3 4.2 23 2-24 106-128 (194)
207 PHA03136 thymidine kinase; Pro 46.5 11 0.00024 36.8 1.5 44 2-50 193-236 (378)
208 PRK02458 ribose-phosphate pyro 46.1 2.4E+02 0.0052 26.8 10.6 85 161-252 9-97 (323)
209 PRK14532 adenylate kinase; Pro 45.7 83 0.0018 26.7 6.8 21 1-21 107-127 (188)
210 COG0120 RpiA Ribose 5-phosphat 45.2 64 0.0014 29.3 6.1 68 222-293 25-102 (227)
211 PRK07199 phosphoribosylpyropho 44.1 1.9E+02 0.0041 27.2 9.4 78 169-252 9-89 (301)
212 PRK01259 ribose-phosphate pyro 44.1 2.6E+02 0.0057 26.4 10.4 78 169-252 7-88 (309)
213 cd03416 CbiX_SirB_N Sirohydroc 43.5 88 0.0019 23.7 6.0 44 228-273 45-97 (101)
214 PRK00553 ribose-phosphate pyro 43.0 2E+02 0.0043 27.6 9.5 85 161-252 9-97 (332)
215 cd07409 MPP_CD73_N CD73 ecto-5 42.3 1.4E+02 0.0031 27.4 8.3 75 184-274 139-213 (281)
216 PF02875 Mur_ligase_C: Mur lig 42.2 1.2E+02 0.0027 22.5 6.6 60 215-277 14-82 (91)
217 TIGR01313 therm_gnt_kin carboh 41.7 80 0.0017 26.0 6.0 64 4-77 97-161 (163)
218 PLN02757 sirohydrochlorine fer 40.6 63 0.0014 27.4 5.1 44 228-273 59-111 (154)
219 PRK00279 adk adenylate kinase; 40.1 55 0.0012 28.7 4.9 21 2-22 108-128 (215)
220 TIGR03575 selen_PSTK_euk L-ser 39.1 2.5E+02 0.0055 27.0 9.6 67 3-77 157-228 (340)
221 PRK00889 adenylylsulfate kinas 39.1 8.7 0.00019 32.5 -0.4 15 4-18 103-117 (175)
222 COG0169 AroE Shikimate 5-dehyd 38.9 67 0.0015 30.1 5.5 53 207-267 120-172 (283)
223 cd02022 DPCK Dephospho-coenzym 38.8 27 0.00059 29.8 2.7 42 18-65 135-176 (179)
224 COG1072 CoaA Panthothenate kin 38.5 23 0.00051 33.1 2.3 24 1-24 211-234 (283)
225 PRK09375 quinolinate synthetas 37.9 82 0.0018 30.1 5.9 101 160-272 89-212 (319)
226 PRK03092 ribose-phosphate pyro 37.8 2.2E+02 0.0047 26.9 8.8 64 184-252 10-77 (304)
227 PF00455 DeoRC: DeoR C termina 37.5 1.2E+02 0.0027 25.4 6.5 51 211-272 17-67 (161)
228 cd00227 CPT Chloramphenicol (C 37.5 98 0.0021 26.0 5.9 59 4-76 114-173 (175)
229 PRK10241 hydroxyacylglutathion 36.5 1.4E+02 0.003 27.1 7.1 51 214-274 22-78 (251)
230 PRK13978 ribose-5-phosphate is 35.8 1.2E+02 0.0026 27.6 6.4 68 222-292 26-103 (228)
231 COG0462 PrsA Phosphoribosylpyr 34.4 2.6E+02 0.0056 26.7 8.6 78 169-252 11-92 (314)
232 TIGR01351 adk adenylate kinase 33.8 81 0.0018 27.5 4.9 20 2-21 105-124 (210)
233 PRK03839 putative kinase; Prov 33.3 1.1E+02 0.0023 25.8 5.5 20 2-21 81-100 (180)
234 COG0118 HisH Glutamine amidotr 33.1 59 0.0013 29.0 3.9 15 280-294 39-53 (204)
235 PF01170 UPF0020: Putative RNA 32.9 27 0.00058 30.1 1.7 22 216-237 30-51 (179)
236 COG0796 MurI Glutamate racemas 32.4 1.3E+02 0.0027 28.2 6.1 77 170-272 16-96 (269)
237 PRK00865 glutamate racemase; P 32.3 93 0.002 28.5 5.2 86 165-272 8-96 (261)
238 TIGR01809 Shik-DH-AROM shikima 31.5 89 0.0019 28.9 5.0 48 210-265 122-169 (282)
239 PF02445 NadA: Quinolinate syn 31.5 33 0.00072 32.4 2.1 25 253-280 172-196 (296)
240 PLN02369 ribose-phosphate pyro 31.5 3.3E+02 0.0071 25.6 8.9 72 175-252 4-79 (302)
241 PLN02384 ribose-5-phosphate is 31.2 1.1E+02 0.0023 28.6 5.4 68 222-291 54-131 (264)
242 PRK05537 bifunctional sulfate 31.2 60 0.0013 33.4 4.1 67 3-78 494-561 (568)
243 cd02021 GntK Gluconate kinase 31.0 92 0.002 25.2 4.6 37 3-41 100-136 (150)
244 COG1207 GlmU N-acetylglucosami 30.6 3.4E+02 0.0074 27.2 8.9 63 213-277 68-137 (460)
245 TIGR00455 apsK adenylylsulfate 30.5 98 0.0021 26.2 4.8 16 3-18 118-133 (184)
246 PLN02962 hydroxyacylglutathion 30.5 4.2E+02 0.0091 24.1 9.5 57 212-276 34-96 (251)
247 PHA01735 hypothetical protein 30.2 82 0.0018 23.3 3.5 40 222-268 28-67 (76)
248 PRK13384 delta-aminolevulinic 30.0 1.2E+02 0.0026 29.0 5.5 50 227-278 61-126 (322)
249 cd06353 PBP1_BmpA_Med_like Per 29.9 1.8E+02 0.0039 26.3 6.7 54 215-272 33-86 (258)
250 cd04823 ALAD_PBGS_aspartate_ri 29.5 1.3E+02 0.0028 28.7 5.7 52 226-279 53-122 (320)
251 PF02384 N6_Mtase: N-6 DNA Met 28.9 59 0.0013 30.1 3.4 24 216-239 48-71 (311)
252 PRK11524 putative methyltransf 28.8 40 0.00086 31.2 2.2 41 215-264 209-249 (284)
253 PF02310 B12-binding: B12 bind 28.8 2.7E+02 0.0059 21.4 7.2 58 213-277 28-91 (121)
254 PF04312 DUF460: Protein of un 28.7 50 0.0011 27.7 2.5 72 215-290 33-123 (138)
255 PRK13699 putative methylase; P 27.8 44 0.00094 30.1 2.2 19 217-235 166-184 (227)
256 cd01529 4RHOD_Repeats Member o 27.4 1.2E+02 0.0027 22.5 4.5 33 212-249 55-87 (96)
257 cd01444 GlpE_ST GlpE sulfurtra 27.4 87 0.0019 23.0 3.5 31 212-247 55-85 (96)
258 PF00490 ALAD: Delta-aminolevu 27.1 2.1E+02 0.0046 27.4 6.7 51 226-278 56-124 (324)
259 COG4974 XerD Site-specific rec 27.1 91 0.002 29.5 4.2 74 27-106 184-257 (300)
260 cd00158 RHOD Rhodanese Homolog 26.8 1.3E+02 0.0027 21.4 4.3 33 212-249 49-81 (89)
261 cd04824 eu_ALAD_PBGS_cysteine_ 26.8 1.5E+02 0.0033 28.3 5.6 50 227-278 51-119 (320)
262 PF04444 Dioxygenase_N: Catech 26.4 79 0.0017 23.5 3.0 29 101-129 11-39 (74)
263 KOG2304 3-hydroxyacyl-CoA dehy 26.3 40 0.00087 31.0 1.6 34 90-124 150-183 (298)
264 PLN02199 shikimate kinase 26.3 2.2E+02 0.0048 27.0 6.6 49 3-61 197-257 (303)
265 TIGR01302 IMP_dehydrog inosine 26.2 1.4E+02 0.0029 29.8 5.6 60 215-277 211-275 (450)
266 COG4088 Predicted nucleotide k 26.1 1E+02 0.0022 28.2 4.1 64 3-78 104-172 (261)
267 cd01453 vWA_transcription_fact 26.1 2.3E+02 0.005 24.2 6.4 50 213-265 108-158 (183)
268 cd00384 ALAD_PBGS Porphobilino 26.0 1.6E+02 0.0034 28.1 5.6 51 226-278 50-116 (314)
269 PRK10411 DNA-binding transcrip 25.6 2E+02 0.0044 25.9 6.2 51 210-272 90-140 (240)
270 PRK12548 shikimate 5-dehydroge 24.5 2.7E+02 0.0059 25.7 7.0 35 211-251 124-158 (289)
271 PF01903 CbiX: CbiX; InterPro 24.5 53 0.0011 25.1 1.9 41 231-273 41-90 (105)
272 PRK09283 delta-aminolevulinic 24.3 1.9E+02 0.004 27.8 5.7 50 227-278 59-124 (323)
273 PRK13509 transcriptional repre 24.1 2.4E+02 0.0053 25.5 6.5 51 211-273 91-141 (251)
274 cd06306 PBP1_TorT-like TorT-li 23.8 1.2E+02 0.0025 27.0 4.3 37 226-263 192-228 (268)
275 PF10662 PduV-EutP: Ethanolami 23.6 1.3E+02 0.0027 25.3 4.1 40 222-264 101-140 (143)
276 PRK10936 TMAO reductase system 23.5 1.3E+02 0.0027 28.3 4.6 38 225-263 238-275 (343)
277 TIGR03642 cas_csx13 CRISPR-ass 22.8 3E+02 0.0064 22.6 6.0 44 230-273 8-57 (124)
278 PRK00258 aroE shikimate 5-dehy 22.7 1.9E+02 0.0041 26.5 5.5 48 210-265 120-167 (278)
279 PRK00886 2-phosphosulfolactate 22.6 3.4E+02 0.0074 24.7 7.0 106 160-275 20-148 (240)
280 smart00785 AARP2CN AARP2CN (NU 22.3 36 0.00077 25.8 0.5 15 278-292 56-71 (83)
281 cd06259 YdcF-like YdcF-like. Y 22.2 1.3E+02 0.0028 24.5 3.9 63 213-277 67-130 (150)
282 PRK05500 bifunctional orotidin 22.1 2.8E+02 0.0062 28.0 6.9 44 226-270 162-206 (477)
283 TIGR01530 nadN NAD pyrophospha 21.9 4E+02 0.0087 27.2 8.2 135 105-274 77-213 (550)
284 KOG4169 15-hydroxyprostaglandi 21.7 2.7E+02 0.0059 25.7 6.0 62 210-276 2-63 (261)
285 PF08142 AARP2CN: AARP2CN (NUC 21.7 37 0.00081 25.8 0.5 22 271-292 50-73 (85)
286 PRK09802 DNA-binding transcrip 21.4 2.8E+02 0.0061 25.5 6.3 52 210-272 103-154 (269)
287 PRK12829 short chain dehydroge 21.4 4.3E+02 0.0093 23.0 7.5 51 210-268 8-58 (264)
288 KOG3350 Uncharacterized conser 21.3 82 0.0018 27.9 2.5 46 205-250 126-172 (217)
289 PRK00676 hemA glutamyl-tRNA re 21.3 1.7E+02 0.0037 28.2 5.0 36 209-250 170-205 (338)
290 TIGR01470 cysG_Nterm siroheme 21.3 3.1E+02 0.0067 24.1 6.4 46 210-263 6-51 (205)
291 PF03807 F420_oxidored: NADP o 21.1 3E+02 0.0065 20.2 5.5 44 222-266 4-47 (96)
292 PRK12749 quinate/shikimate deh 20.6 2.8E+02 0.0061 25.8 6.2 51 210-266 121-172 (288)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-69 Score=472.71 Aligned_cols=207 Identities=41% Similarity=0.625 Sum_probs=200.1
Q ss_pred CceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeec-cceeEEEecc
Q 022183 91 PNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR 169 (301)
Q Consensus 91 ~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~-~~i~~V~IlR 169 (301)
.++++++|| +++|++|+|||++|++.+||++++||++||+|||++++|+++++|+||++ +++|..+. +++|+|||||
T Consensus 2 ~~v~vi~hp-li~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDHP-LVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEeCcH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEee
Confidence 579999997 79999999999999999999999999999999999999999999999999 57888886 4599999999
Q ss_pred cchHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEE
Q 022183 170 SGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 248 (301)
Q Consensus 170 aG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~ 248 (301)
||++|.+|+.+++|+|++|||+++||++|+ +..||.|||++++++.|+|+|||+|||+|+++|++.|+++| .+++|++
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G-~~~~I~~ 158 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG-GPKNIKV 158 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC-CCceEEE
Confidence 999999999999999999999999999998 88999999999999999999999999999999999999997 6699999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 249 LNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 249 ~~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
+|++|+|+|++++.++||+|+||||+||++||++|||+|||||||||+|||+
T Consensus 159 v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~ 210 (210)
T COG0035 159 VSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210 (210)
T ss_pred EEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999999995
No 2
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=1.6e-65 Score=456.35 Aligned_cols=204 Identities=46% Similarity=0.761 Sum_probs=188.4
Q ss_pred eccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCC-CCCeeeEeeCCCCceeeeeeecc-ceeEEEecccch
Q 022183 95 VIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFCK-KLCGVSIVRSGE 172 (301)
Q Consensus 95 vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~V~tp~g~~~~g~~~~~-~i~~V~IlRaG~ 172 (301)
|++|| ++++|+|+|||++|++.+||++++||++||+|||+++ +|+++++|+||+|.++.|..... ++|+|||||||+
T Consensus 1 V~~~p-~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~ 79 (207)
T PF14681_consen 1 VPQHP-LLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGL 79 (207)
T ss_dssp EEB-H-HHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHH
T ss_pred CCCCH-HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcH
Confidence 45665 7999999999999999999999999999999999997 99999999999999888876654 999999999999
Q ss_pred HHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022183 173 SMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 173 ~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
+|++++++++|+|++|+|+++||++++ +++||.+||+++++++|||+|||+|||+|+++|++.|+++|+++++|+++|+
T Consensus 80 ~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ 159 (207)
T PF14681_consen 80 PMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSV 159 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEE
Confidence 999999999999999999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred EeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCC
Q 022183 252 ISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 299 (301)
Q Consensus 252 vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt 299 (301)
++|++|++++.++||+|+|||++||++||++|||+||+||||||||||
T Consensus 160 ias~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 160 IASPEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp EEEHHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred EecHHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 999999999999999999999999999999999999999999999998
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=1.9e-63 Score=450.50 Aligned_cols=207 Identities=27% Similarity=0.399 Sum_probs=193.0
Q ss_pred ceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCC-CCCeeeEeeCCCCceeeeeeec--cceeEEEec
Q 022183 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH-LPFTEKQVVTPTGSMYTGVDFC--KKLCGVSIV 168 (301)
Q Consensus 92 ~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~-lp~~~~~V~tp~g~~~~g~~~~--~~i~~V~Il 168 (301)
.+++.+| |++++|+|+|||++|++.+||++++||++||+|||+++ +|+++++|+||+|.. .+..+. +++|+||||
T Consensus 33 ~~~~~~~-p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~~-~~~~~~~~~~i~~V~IL 110 (244)
T PLN02541 33 LVFVPPH-PLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGVA-DVEFIDPREPVAVVPIL 110 (244)
T ss_pred eEEecCC-hHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCeE-EEEeecCCCcEEEEeEe
Confidence 3555555 58999999999999999999999999999999999876 999999999999964 344343 459999999
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCC-CcEEEEEcccccchHHHHHHHHHHHHcCCCCccE
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDIS-ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHI 246 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~-~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I 246 (301)
|||++|++++++++|++++|+++++||+.+. +.+||.|||.+++ ++.|+|+|||||||+|+++|++.|+++|+++++|
T Consensus 111 RAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I 190 (244)
T PLN02541 111 RAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQI 190 (244)
T ss_pred CCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccE
Confidence 9999999999999999999999999999887 7899999999997 5799999999999999999999999999988899
Q ss_pred EEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 247 IFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 247 ~~~~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
+++|++||++||+++.++||+|+|||++||++||++|||+|||||||||||||+
T Consensus 191 ~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 244 (244)
T PLN02541 191 RVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGTE 244 (244)
T ss_pred EEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999999984
No 4
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=1.4e-60 Score=424.58 Aligned_cols=205 Identities=37% Similarity=0.541 Sum_probs=194.9
Q ss_pred ceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeec-cceeEEEeccc
Q 022183 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVRS 170 (301)
Q Consensus 92 ~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~-~~i~~V~IlRa 170 (301)
+||+++| |++++++|+|||++|++.+||++++||++||+|||++++|+++++|+||+|.+ .|..+. +++|+|||||+
T Consensus 1 ~v~~~~~-p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~~-~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIEH-PLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGET-EGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcE-EEeEecCCcEEEEEEeCC
Confidence 5899997 58999999999999999999999999999999999999999999999999985 455554 57999999999
Q ss_pred chHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEE
Q 022183 171 GESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249 (301)
Q Consensus 171 G~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~ 249 (301)
|++|++++.+++|.+++|+++++|++.+. +..+|.++|.++++++|+|+|||+|||+|+.+|++.|+++|+ ++|+++
T Consensus 79 g~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~v~ 156 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGA--KKIKVL 156 (207)
T ss_pred cHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 99999999999999999999999998765 788999999999999999999999999999999999999998 579999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 250 NLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 250 ~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
|++++++|++++.++||+++|||++||++||+++||+||+||||||||||+
T Consensus 157 ~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt~ 207 (207)
T TIGR01091 157 SIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK 207 (207)
T ss_pred EEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999984
No 5
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=2.2e-59 Score=417.51 Aligned_cols=206 Identities=39% Similarity=0.573 Sum_probs=197.3
Q ss_pred CceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeec-cceeEEEecc
Q 022183 91 PNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC-KKLCGVSIVR 169 (301)
Q Consensus 91 ~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~-~~i~~V~IlR 169 (301)
.++|+++|| ++++|+|+|||++|++.+||++++||++||+|||++++|+++++|+||+| .+.|..+. +++|+|+|+|
T Consensus 2 ~~v~~~~~p-~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilr 79 (209)
T PRK00129 2 MKVHVVDHP-LIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILR 79 (209)
T ss_pred CceEecCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeC
Confidence 379999974 89999999999999999999999999999999999999999999999999 58898876 5799999999
Q ss_pred cchHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEE
Q 022183 170 SGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 248 (301)
Q Consensus 170 aG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~ 248 (301)
+|++|++++.+.+|.+++|+++++|++.+. +..+|.++|.++++++|||+|||++||+|+.+|++.|+++|+ ++|++
T Consensus 80 gG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~~ 157 (209)
T PRK00129 80 AGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNIKV 157 (209)
T ss_pred CCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCC--CEEEE
Confidence 999999999999999999999999997765 778899999999999999999999999999999999999996 89999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 249 LNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 249 ~~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
+|++++++|++++.++||+++|||++||++||+++||+||+||||||||||+
T Consensus 158 ~~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~ 209 (209)
T PRK00129 158 LCLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_pred EEEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence 9999999999999999999999999999999999999999999999999984
No 6
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.3e-55 Score=432.99 Aligned_cols=299 Identities=68% Similarity=1.122 Sum_probs=291.1
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+++|+|+|++.|.|++||+.||+.+||+++++++.||.++++|+|++||+|++++||++||.+++|.++++.+.++|+..
T Consensus 174 ~~~k~fvd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~ 253 (473)
T KOG4203|consen 174 FTMKLFVDTDADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSI 253 (473)
T ss_pred hcceEEEecCcchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeecc
Q 022183 81 LGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCK 160 (301)
Q Consensus 81 l~~~~l~~~~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~ 160 (301)
|.++..+....++..++.++++++++|.+||..|++.+|.++.++++|++.++++.++|+.+..+.||.|..+.|.....
T Consensus 254 L~~~~~~~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~ 333 (473)
T KOG4203|consen 254 LAEKSYVRLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCK 333 (473)
T ss_pred hhccccccccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccc
Confidence 99888778888999999888999999999999999999999999999999999999999999999999999998988778
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
++|+|+|+|+|+.|..+++.++++.++|+|+.+|++.++ +.++|.++|++++.. |+++||+++||+++.+|++.|.++
T Consensus 334 ~i~gv~i~r~g~~~~~alr~~~~~vri~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~ 412 (473)
T KOG4203|consen 334 QICGVSIPRSGESMETALRAACKGVRIGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDH 412 (473)
T ss_pred hhccCCCCcchhHHHHHHHHHcCCceeeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998 789999999999988 999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 240 GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 240 g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
|+++++|.+++++++++|++++..+||.++++++++|+.+|+++|++||+||||||||||.
T Consensus 413 gv~~~~i~~~~ll~~~~~~~~~~~~f~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~ 473 (473)
T KOG4203|consen 413 GVPEENIIFLNLLAAPQGIHEVAYAFPKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD 473 (473)
T ss_pred CCcHHHhHHHHHHhhhhhhhHHHHhcccceeehhhhcccccccceECcccccchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 7
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=100.00 E-value=4.9e-44 Score=307.51 Aligned_cols=203 Identities=45% Similarity=0.856 Sum_probs=193.4
Q ss_pred CCCceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEec
Q 022183 89 IYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIV 168 (301)
Q Consensus 89 ~~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~Il 168 (301)
...|++.++...++..++|++||++|++.+|.|++|||+|+.+||.+++||+.++.|+||.|.+|+|.+++..-|+|+|+
T Consensus 64 ~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi~ 143 (267)
T KOG1017|consen 64 YGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSIC 143 (267)
T ss_pred hhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEEE
Confidence 34578888766689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEE
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 247 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~ 247 (301)
|+|++|++|+++++.+.++|+|++..|.+|. .+.+|.++|+||..++|+|+.|++.||+|+++|+++|+++|||+++|+
T Consensus 144 RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~Ii 223 (267)
T KOG1017|consen 144 RSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNII 223 (267)
T ss_pred echHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEE
Confidence 9999999999999999999999999999987 799999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCCeeecCCCchhhhccCCC
Q 022183 248 FLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300 (301)
Q Consensus 248 ~~~~vas~~gl~~l~~~~p~v~i~t~~iD~~l~~~~~ivPGlGd~GdR~fgt~ 300 (301)
+++++++|-|.+.+.++||.++|+|..|.|. .| ..||..||||+
T Consensus 224 L~sLF~tP~gak~i~~~fP~itiltseihpv-------aP--nHFgqkYFGtd 267 (267)
T KOG1017|consen 224 LVSLFITPTGAKNITRKFPYITILTSEIHPV-------AP--NHFGQKYFGTD 267 (267)
T ss_pred EEEeeecchhhHHHHHhCCeEEEEeecceec-------Cc--ccccchhcCCC
Confidence 9999999999999999999999999988774 45 57999999985
No 8
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=8.2e-22 Score=175.21 Aligned_cols=84 Identities=60% Similarity=1.034 Sum_probs=79.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+|+|||||||.|+|++||+.||+.+|||+++++++||..++||+|++||+|++++||+|||.+..|.+|++.+...|...
T Consensus 128 ~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~ 207 (218)
T COG0572 128 MDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASS 207 (218)
T ss_pred cCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988888875
Q ss_pred cccc
Q 022183 81 LGQH 84 (301)
Q Consensus 81 l~~~ 84 (301)
+.+.
T Consensus 208 ~~~~ 211 (218)
T COG0572 208 LSEQ 211 (218)
T ss_pred hhhh
Confidence 5543
No 9
>PTZ00301 uridine kinase; Provisional
Probab=99.74 E-value=3.1e-18 Score=152.84 Aligned_cols=83 Identities=45% Similarity=0.724 Sum_probs=80.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+|++|||++|.|+|+.||+.||+.+||+++++++++|.++++|+|.+||+|+|++||+||+++++|.++++.+.++|...
T Consensus 127 ~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~ 206 (210)
T PTZ00301 127 MDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHD 206 (210)
T ss_pred CCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 022183 81 LGQ 83 (301)
Q Consensus 81 l~~ 83 (301)
|+.
T Consensus 207 ~~~ 209 (210)
T PTZ00301 207 LEN 209 (210)
T ss_pred ccC
Confidence 764
No 10
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.63 E-value=2.4e-16 Score=144.52 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=59.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
+|+|||||++.|+|++|||+||+.||||+.|+|++||++++ |+|.+||+||+++|||+++.
T Consensus 141 ~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 141 ADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred CCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 69999999999999999999999999999999999999966 99999999999999999987
No 11
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.61 E-value=4.9e-16 Score=136.46 Aligned_cols=67 Identities=45% Similarity=0.902 Sum_probs=60.0
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCch
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV 68 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~ 68 (301)
+|++||||+|.|+|+.||+.||+.+||++.++++++|. .++|+|.+||+|++++||+||+++.+|.+
T Consensus 127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~~ 193 (194)
T PF00485_consen 127 FDLKIFLDADEDLRLERRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGPTNDI 193 (194)
T ss_dssp -SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSHH
T ss_pred ceeEEEecccHHHHHHHHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCCCccc
Confidence 69999999999999999999999999999999999999 79999999999999999999999988864
No 12
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.60 E-value=5.3e-16 Score=155.05 Aligned_cols=87 Identities=22% Similarity=0.409 Sum_probs=80.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeec------CCCCCchhH----
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIP------RGGDNHVAI---- 70 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~------~~~~~~~~~---- 70 (301)
+|++||||+|.|+||+||+.||+.+||++++++++||.++++|+|.+||+|++++|||||+ ++.+|++++
T Consensus 177 lDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~ 256 (656)
T PLN02318 177 LDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSS 256 (656)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCC
Confidence 6999999999999999999999999999999999999999999999999999999999993 466788888
Q ss_pred -HHHHHHHhhhccccccc
Q 022183 71 -DLIVQHIHTKLGQHDLC 87 (301)
Q Consensus 71 -~~i~~~i~~~l~~~~l~ 87 (301)
++.++||+..|.++...
T Consensus 257 ~~~~~~~i~~~L~~~~~~ 274 (656)
T PLN02318 257 RSVTVEQIKAVLSEDHTE 274 (656)
T ss_pred ccccHHHHHHHhhhcccc
Confidence 89999999999876533
No 13
>PRK15453 phosphoribulokinase; Provisional
Probab=99.55 E-value=3e-15 Score=138.23 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=58.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
+|+|||||++.|+|++|||.||+.||||+.|+|++||+++ .|+|.+||+||+++|||++..
T Consensus 147 ~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrr-mPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 147 VDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRR-MPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred CCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHh-CChHhhhCCCCcccCcEEEEe
Confidence 6999999999999999999999999999999999999996 599999999999999999876
No 14
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.46 E-value=1.1e-12 Score=123.12 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=99.9
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.++++|++.++|.++++++.+.+++++++.+.-+|+..+... ..++|.+++|++|+|+|||++||+|+.+|++.|++.
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~--~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~ 228 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE--VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQE 228 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceee--eEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999887543222 347888999999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
|+ ++|.+++ .+++++|++++.+...+--++|..+..
T Consensus 229 Ga--~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~~ 266 (302)
T PLN02369 229 GA--REVYACATHAVFSPPAIERLSSGLFQEVIVTNTIPV 266 (302)
T ss_pred CC--CEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCCC
Confidence 99 7898888 799999999999877777777877744
No 15
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.41 E-value=4.1e-13 Score=118.95 Aligned_cols=83 Identities=52% Similarity=0.890 Sum_probs=78.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+|++|||++|.++|+.|++.||..+||++.++++++|.+.++|.|..|++|.+++||+||+++.+|..+++.+.++|...
T Consensus 126 ~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~ 205 (209)
T PRK05480 126 MDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQL 205 (209)
T ss_pred hceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999888999999999999877
Q ss_pred ccc
Q 022183 81 LGQ 83 (301)
Q Consensus 81 l~~ 83 (301)
+.+
T Consensus 206 ~~~ 208 (209)
T PRK05480 206 LEK 208 (209)
T ss_pred hhc
Confidence 654
No 16
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.36 E-value=6.6e-12 Score=108.23 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=82.7
Q ss_pred ceeEEEecccchHHHHHHHHhcc-CCeeeeEEEEec--C-CCC-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCK-GIKIGKILIHRD--G-DNG-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 235 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd--~-~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~ 235 (301)
+.++|+|+|+|++++..+.+.++ ++.++++.+++. . .+. ....+.++|.+++|++|+|+|||++||+|+.++++.
T Consensus 27 ~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~~ 106 (166)
T TIGR01203 27 PLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLDL 106 (166)
T ss_pred CeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHHH
Confidence 57999999999999999999998 678999888833 2 222 334567788899999999999999999999999999
Q ss_pred HHHcCCCCccEEEEEEEeCHHHH
Q 022183 236 LIEKGVPESHIIFLNLISAPEGI 258 (301)
Q Consensus 236 L~~~g~~~~~I~~~~~vas~~gl 258 (301)
|+++|+ ++|.+++++..+.+-
T Consensus 107 l~~~g~--~~i~~~~l~~k~~~~ 127 (166)
T TIGR01203 107 LKARKP--KSLKIVTLLDKPSRR 127 (166)
T ss_pred HHHCCC--CEEEEEEEEecCccC
Confidence 999998 689999999998873
No 17
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.33 E-value=3.1e-12 Score=112.36 Aligned_cols=79 Identities=75% Similarity=1.210 Sum_probs=75.4
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
+|++|||++|.++|+.||+.||..+||++.+++++.|....+|.|..|++|+++.||+||++++++..++..+.++++.
T Consensus 119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~~ 197 (198)
T cd02023 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIKS 197 (198)
T ss_pred cCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999999999999999888999999988875
No 18
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.33 E-value=3.2e-12 Score=113.37 Aligned_cols=81 Identities=56% Similarity=0.947 Sum_probs=77.8
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+|++|||++|.++|+.|++.||..+||++.+.++.+|....+|.|..|+.|+++.||+||+++++++.++..+.+.|+..
T Consensus 126 ~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~ 205 (207)
T TIGR00235 126 MDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHL 205 (207)
T ss_pred CCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 022183 81 L 81 (301)
Q Consensus 81 l 81 (301)
+
T Consensus 206 ~ 206 (207)
T TIGR00235 206 L 206 (207)
T ss_pred h
Confidence 4
No 19
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.29 E-value=6e-11 Score=111.60 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=95.1
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
+++++|+...+|..+...+.+.+++++++++..+|+..+.......+++.+++||+|+|+|||++||+|+.++++.|+++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~ 227 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEA 227 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhc
Confidence 46799999999999999999999878899999999765432334778899999999999999999999999999999999
Q ss_pred CCCCccEEEEEE--EeCHHHHHHHHHh-CCCcEEEEEee
Q 022183 240 GVPESHIIFLNL--ISAPEGIHCVCKR-FPSLKIVTSEI 275 (301)
Q Consensus 240 g~~~~~I~~~~~--vas~~gl~~l~~~-~p~v~i~t~~i 275 (301)
|+ ++|.+++. +.++++++++.+. .. --+.|-.+
T Consensus 228 Ga--~~I~~~~tH~v~~~~a~~~l~~~~~~-~i~~t~ti 263 (304)
T PRK03092 228 GA--KDVIIAATHGVLSGPAAERLKNCGAR-EVVVTDTL 263 (304)
T ss_pred CC--CeEEEEEEcccCChHHHHHHHHCCCC-EEEEeeee
Confidence 99 68988885 8999999999876 33 22444444
No 20
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.27 E-value=2.3e-12 Score=115.89 Aligned_cols=67 Identities=24% Similarity=0.429 Sum_probs=61.7
Q ss_pred CCeEEEEeCCchhH---HHHHhhhccccCCCCHHHHHHH----------------HHhhccchhHhhcccccccccEeec
Q 022183 1 MNMKIFVDTDADVR---LARRIRRDTVERGRDVDSVLEQ----------------YAKFVKPAFDDFVLPSKKYADVIIP 61 (301)
Q Consensus 1 ~d~~ifvd~~~d~r---l~Rri~RD~~erg~~~~~v~~~----------------~~~~~~p~~~~~i~P~~~~ADiii~ 61 (301)
+|+|||||+|.|++ |.||..||+.+|||+.+++++| |++.++|++++||.|++++||+||+
T Consensus 129 ~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~ 208 (220)
T cd02025 129 FDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILE 208 (220)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEE
Confidence 69999999999995 8888999999999999988875 7889999999999999999999999
Q ss_pred CCCCCc
Q 022183 62 RGGDNH 67 (301)
Q Consensus 62 ~~~~~~ 67 (301)
.+.++.
T Consensus 209 ~~~~~~ 214 (220)
T cd02025 209 KGADHS 214 (220)
T ss_pred eCCCCc
Confidence 987765
No 21
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.27 E-value=1.8e-11 Score=106.30 Aligned_cols=141 Identities=24% Similarity=0.357 Sum_probs=100.1
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC-----Ceeee
Q 022183 115 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-----IKIGK 189 (301)
Q Consensus 115 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-----a~~G~ 189 (301)
+.+++...+.+|++.+... +.|. .+.++|+++++|..+...+.+.++. +++++
T Consensus 8 s~~~i~~~i~~la~~i~~~-------------------~~~~---~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~ 65 (176)
T PRK05205 8 DAEALRRALTRIAHEIIER-------------------NKGL---DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGE 65 (176)
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------cCCC---CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccce
Confidence 4566777777776666321 1121 2579999999999999999999963 44787
Q ss_pred EEE--EecCCC--C--ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEe-----CHHHH
Q 022183 190 ILI--HRDGDN--G--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS-----APEGI 258 (301)
Q Consensus 190 i~i--~Rd~~~--~--~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~va-----s~~gl 258 (301)
+.+ +|+... + +...+.++|.+++|++|+|+||+++||+|+.++++.|++.|.+ ++|.+++++. .+-+.
T Consensus 66 l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~-~~v~~avL~~K~~~~~~~~~ 144 (176)
T PRK05205 66 LDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRP-ARVQLAVLVDRGHRELPIRA 144 (176)
T ss_pred EEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCC-cEEEEEEEEECCCCcCCCCC
Confidence 655 455432 2 3344577888899999999999999999999999999999955 7899999987 34444
Q ss_pred HHHHHhCCCc--EEEEEeecCC
Q 022183 259 HCVCKRFPSL--KIVTSEIDVA 278 (301)
Q Consensus 259 ~~l~~~~p~v--~i~t~~iD~~ 278 (301)
+.+...+|+. +.+-..+++.
T Consensus 145 Dyvg~~ip~~~~~~~~~~~~~~ 166 (176)
T PRK05205 145 DYVGKNIPTSRDERVVVRLAEV 166 (176)
T ss_pred CEEEEECCCCCCCEEEEEecCC
Confidence 5555555542 2444444443
No 22
>PLN02348 phosphoribulokinase
Probab=99.19 E-value=1.8e-11 Score=117.82 Aligned_cols=61 Identities=38% Similarity=0.737 Sum_probs=58.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
+|++||||++.|+|+.||++||+.+||++.++++++|.+ ++|+|.+||+|++++||+||+-
T Consensus 183 ~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 183 LDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred CcEEEEEECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEe
Confidence 699999999999999999999999999999999999876 8999999999999999999976
No 23
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.18 E-value=1.8e-11 Score=106.58 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=52.0
Q ss_pred CCeEEEEeCCchh-HHHHHhhhccccCCCCHHHHHHHHHhhccchhH-hhcccccccccEeec
Q 022183 1 MNMKIFVDTDADV-RLARRIRRDTVERGRDVDSVLEQYAKFVKPAFD-DFVLPSKKYADVIIP 61 (301)
Q Consensus 1 ~d~~ifvd~~~d~-rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~-~~i~P~~~~ADiii~ 61 (301)
+|++||||+|.++ |+.||+.||+.+||++.++++++|. +.|+++ .|+.|+++.||+|++
T Consensus 118 ~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~--~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 118 LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWP--SVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcc--cccCchhhcCCCchhccceecc
Confidence 5999999999999 9999999999999999999999964 445555 555789999999985
No 24
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.06 E-value=1.4e-10 Score=107.59 Aligned_cols=61 Identities=34% Similarity=0.738 Sum_probs=58.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
+|++|||++|.++|+.||++||+.+||++.++++++|.+ ++|.+.+||.|++++||+||+.
T Consensus 116 ~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 116 LDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred ccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hchhHHHHhccccccCcEEEEc
Confidence 599999999999999999999999999999999999986 8999999999999999999965
No 25
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.01 E-value=1.6e-09 Score=91.78 Aligned_cols=140 Identities=26% Similarity=0.394 Sum_probs=104.4
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc-----CCeeee
Q 022183 115 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK-----GIKIGK 189 (301)
Q Consensus 115 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p-----~a~~G~ 189 (301)
+..++++...||+.-++|.- .|. .+++++.|-+.|.++++.+.+-+. ++++|.
T Consensus 8 d~~~i~RtitRia~eIiErn-------------------k~~---~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~ 65 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERN-------------------KGL---DNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGE 65 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHh-------------------CCC---CceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeee
Confidence 45678888888877776631 122 378999999999999988877665 456777
Q ss_pred --EEEEecCCCC-----ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeC-----HHH
Q 022183 190 --ILIHRDGDNG-----KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-----PEG 257 (301)
Q Consensus 190 --i~i~Rd~~~~-----~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas-----~~g 257 (301)
|.++||+-+. +...-..+|.+++||+|+|+|++|.||.|+.+|++.|.+.|.| .+|.+++++-- |--
T Consensus 66 lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRP-a~I~LavLVDRGHRELPIR 144 (179)
T COG2065 66 LDITLYRDDLTQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRP-AKIQLAVLVDRGHRELPIR 144 (179)
T ss_pred EEeEEeechhhhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCc-ceEEEEEEEcCCCccCCcc
Confidence 6789997542 3445678888999999999999999999999999999999998 79999999843 222
Q ss_pred HHHHHHhCC-----CcEEEEEeecC
Q 022183 258 IHCVCKRFP-----SLKIVTSEIDV 277 (301)
Q Consensus 258 l~~l~~~~p-----~v~i~t~~iD~ 277 (301)
-..+.+.-| .|.++.-..|.
T Consensus 145 aDyVGKniPTs~~E~V~V~l~e~D~ 169 (179)
T COG2065 145 ADYVGKNIPTSRSEEVKVRLEEVDG 169 (179)
T ss_pred cccccCcCCCCCcceEEEEeeccCC
Confidence 223334334 25666655554
No 26
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.00 E-value=5.6e-09 Score=98.53 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=90.5
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
++.++|++.++|..+...+.+.+. ++...+.-.|. ......-..+..+++|++|+|+||+++||+|+..+++.|+++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~--~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~ 234 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRP--RANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKER 234 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecc--cceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHcc
Confidence 478999999999999999998884 45543332221 111112234456789999999999999999999999999999
Q ss_pred CCCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecCC
Q 022183 240 GVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTSEIDVA 278 (301)
Q Consensus 240 g~~~~~I~~~~~--vas~~gl~~l~~~~p~v~i~t~~iD~~ 278 (301)
|+ ++|.+++. +.++++++++.+..++--++|.+++..
T Consensus 235 Ga--~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~ 273 (309)
T PRK01259 235 GA--KSVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLS 273 (309)
T ss_pred CC--CEEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccc
Confidence 99 68888885 899999999998888888999888764
No 27
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.99 E-value=1.5e-08 Score=88.41 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=93.5
Q ss_pred ChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC-CeeeeEEEE
Q 022183 115 SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-IKIGKILIH 193 (301)
Q Consensus 115 ~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-a~~G~i~i~ 193 (301)
+..++...+++|+..+.+.... . ..++++|+|+++|..++.-+.+.+.- ..++++.++
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~~~------------~---------~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s 68 (178)
T PRK15423 10 PEAEIKARIAELGRQITERYKD------------S---------GSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc------------c---------CCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE
Confidence 5567888888888877654311 0 12578999999999999999988864 577888887
Q ss_pred ecC-CC---CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHH
Q 022183 194 RDG-DN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEG 257 (301)
Q Consensus 194 Rd~-~~---~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~g 257 (301)
+.. .+ +.......+|.+++||+|+|+|+++.||.|+.++.+.|+++|+ +++.+++++--+.+
T Consensus 69 sY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~--~~v~~avL~~K~~~ 134 (178)
T PRK15423 69 SYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP--KSLAICTLLDKPSR 134 (178)
T ss_pred EecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCC--CEEEEEEEEECCCC
Confidence 764 22 2222245567789999999999999999999999999999998 78999999987765
No 28
>PRK07429 phosphoribulokinase; Provisional
Probab=98.98 E-value=5.3e-10 Score=106.18 Aligned_cols=62 Identities=29% Similarity=0.658 Sum_probs=59.1
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
+|++|||++|.++|+.||++||..+||++.+++.+.|.+ ++|.+.+||.|++++||+||+..
T Consensus 125 ~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~~-r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 125 YDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA-REPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-hCccHhhhhcccccCCCEEEEcC
Confidence 699999999999999999999999999999999999876 89999999999999999999873
No 29
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.97 E-value=6.6e-09 Score=98.80 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=89.2
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
+++++|+.-.+|..++..+.+.++.++.+.+.-+|+..+. .....++.+++|++|+|+||+++||+|+.++++.|+++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~--~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~ 256 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNV--AEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKE 256 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCce--eeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhcc
Confidence 4789999999999999999999988888877777653322 12345667899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEE
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~~p~v~i~t~ 273 (301)
|+ ++|.+++ .+.+++++++|.+. +==+|++.
T Consensus 257 Ga--~~v~~~~tH~v~s~~a~~~l~~~-~id~iv~t 289 (330)
T PRK02812 257 GA--KQVYACATHAVFSPPAIERLSSG-LFEEVIVT 289 (330)
T ss_pred CC--CeEEEEEEcccCChHHHHHHhhC-CCCEEEEe
Confidence 99 7898888 79999999999753 11245544
No 30
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.93 E-value=1.1e-08 Score=91.30 Aligned_cols=126 Identities=12% Similarity=0.216 Sum_probs=95.7
Q ss_pred CChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc----CCeeee
Q 022183 114 ISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK----GIKIGK 189 (301)
Q Consensus 114 T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p----~a~~G~ 189 (301)
.+..++...+++|+..+.+..- .+. +.+ .+++++|+|+++|+.|+.-|.+.+. ...+++
T Consensus 28 is~e~I~~~i~~LA~~I~~~~~-~~~--------~~~--------~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdf 90 (211)
T PTZ00271 28 VTQEQVWAATAKCAKKIAEDYR-SFK--------LTT--------ENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEF 90 (211)
T ss_pred cCHHHHHHHHHHHHHHHHHHhh-hcc--------ccC--------CCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEE
Confidence 4667788888888888865421 110 111 1367899999999999888877763 457888
Q ss_pred EEEEecC-CC---CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHH
Q 022183 190 ILIHRDG-DN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGI 258 (301)
Q Consensus 190 i~i~Rd~-~~---~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl 258 (301)
+.+.+.. .+ +.......++.+++||+|||+|+++.||.|+.++++.|+++|+ ++|.+++++--+.+-
T Consensus 91 i~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p--~svk~avL~dK~~~r 161 (211)
T PTZ00271 91 ICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSGR 161 (211)
T ss_pred EEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCC--CEEEEEEEEEcccCC
Confidence 8887763 22 2222345677899999999999999999999999999999987 799999999887763
No 31
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.93 E-value=1.9e-08 Score=97.26 Aligned_cols=111 Identities=21% Similarity=0.301 Sum_probs=86.3
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC---C--ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHH
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN---G--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQ 234 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~---~--~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~ 234 (301)
++.++|+.-.+|...+..+.+.+. ++...+.-.|+..+ + +..++..++.+++|++|||+|||++||+|+..|++
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~ 285 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAK 285 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHH
Confidence 467899999999999888888763 55554444454321 2 33556666768999999999999999999999999
Q ss_pred HHHHcCCCCccEEEEEEEeC-HHHHHHHHHhCCC--c-EEEEE
Q 022183 235 LLIEKGVPESHIIFLNLISA-PEGIHCVCKRFPS--L-KIVTS 273 (301)
Q Consensus 235 ~L~~~g~~~~~I~~~~~vas-~~gl~~l~~~~p~--v-~i~t~ 273 (301)
.|+++|+ ++|.+++..+. ++|++++.++|++ + +|++.
T Consensus 286 ~Lk~~GA--~~V~~~~tH~vf~~a~~~l~~~~~~g~i~~iv~T 326 (382)
T PRK06827 286 ELKSRGA--KKIIVAATFGFFTNGLEKFDKAYEEGYFDRIIGT 326 (382)
T ss_pred HHHHcCC--CEEEEEEEeecChHHHHHHHhhcccCCCCEEEEe
Confidence 9999999 68999997754 5999999988765 3 45554
No 32
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.90 E-value=4.7e-08 Score=85.37 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=89.1
Q ss_pred cCCCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhcc-CCeeee
Q 022183 111 DRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCK-GIKIGK 189 (301)
Q Consensus 111 d~~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~ 189 (301)
+.--+..+|...+.+|+..+.... + + .+.++|++.++|..++..+.+.+. ....+.
T Consensus 14 ~~~~s~~~i~~~i~~la~~i~~~~---------------~----~----~~~viV~i~~gg~~~A~~La~~l~~~~~~~~ 70 (181)
T PRK09162 14 DCLVSAAEVEAAIDRMADEITADL---------------A----D----ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDY 70 (181)
T ss_pred cEeecHHHHHHHHHHHHHHHHHHc---------------C----C----CCeEEEEECCCcHHHHHHHHHHcCCCcccCE
Confidence 344456678888888888776542 0 0 134889999999999999998886 334566
Q ss_pred EEEEecCCCC---ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHH
Q 022183 190 ILIHRDGDNG---KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE 256 (301)
Q Consensus 190 i~i~Rd~~~~---~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~ 256 (301)
+...+...+. .......++.+++|++|+|+||++.||.|+.++.+.|++.|+ ++|.++++..-+.
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga--~~V~~avL~~k~~ 138 (181)
T PRK09162 71 LHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGA--AEVYSAVLVDKTH 138 (181)
T ss_pred EEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCC--CEEEEEEEEEcCc
Confidence 6666654322 112233445678999999999999999999999999999998 7898888775544
No 33
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.89 E-value=3.1e-08 Score=93.48 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=89.0
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
++.++|+...+|..+...+.+.+. ++.+++.-.|...++ +.....++.+++|++|+|+||+++||+|+..+++.|++.
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~-~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~ 236 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATN-EVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSA 236 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCC-EEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhc
Confidence 467899999999999999998875 667666666653222 334567788899999999999999999999999999999
Q ss_pred CCCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEEee
Q 022183 240 GVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTSEI 275 (301)
Q Consensus 240 g~~~~~I~~~~~--vas~~gl~~l~~~~p~v~i~t~~i 275 (301)
|+ ++|.+++. +.++++++++.+...+--++|-.+
T Consensus 237 ga--~~v~~~~th~v~~~~a~~~l~~~~~~~iv~tdt~ 272 (308)
T TIGR01251 237 GA--KRVIAAATHGVFSGPAIERIANAGVEEVIVTNTI 272 (308)
T ss_pred CC--CEEEEEEEeeecCcHHHHHHHhCCCCEEEEeCCC
Confidence 99 68988884 579999999998754433444333
No 34
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.86 E-value=1.8e-09 Score=100.87 Aligned_cols=67 Identities=22% Similarity=0.399 Sum_probs=55.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhc--cccCC-CCHHH----------------HHHHHHhhccchhHhhcccccccccEeec
Q 022183 1 MNMKIFVDTDADVRLARRIRRD--TVERG-RDVDS----------------VLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD--~~erg-~~~~~----------------v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (301)
||++||||+|+|+++.|+++|+ ..+|+ ++.++ +++.|.+..+|++.+||.|+|..||+||+
T Consensus 197 ~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~ 276 (290)
T TIGR00554 197 VDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILT 276 (290)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEe
Confidence 6999999999999999999994 44555 55444 44456999999999999999999999999
Q ss_pred CCCCCc
Q 022183 62 RGGDNH 67 (301)
Q Consensus 62 ~~~~~~ 67 (301)
.+.+..
T Consensus 277 ~~~~h~ 282 (290)
T TIGR00554 277 KGANHA 282 (290)
T ss_pred cCCCCc
Confidence 866543
No 35
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.85 E-value=1.1e-08 Score=82.66 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=64.7
Q ss_pred EEEecccchHHHHHHHHhccCCeeeeEEE--------EecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHH
Q 022183 164 GVSIVRSGESMENALRACCKGIKIGKILI--------HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 235 (301)
Q Consensus 164 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i--------~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~ 235 (301)
+|++.++|.++...+...+.......... ...........+...+..++|++|+|+||+++||+|+..+++.
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHHHHH
T ss_pred EEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHHHHHH
Confidence 89999999999999888876533322211 1111122333445556688999999999999999999999999
Q ss_pred HHHcCCCCccEEEEEEE
Q 022183 236 LIEKGVPESHIIFLNLI 252 (301)
Q Consensus 236 L~~~g~~~~~I~~~~~v 252 (301)
|++.|+ +.|.+++++
T Consensus 111 L~~~g~--~~v~~~vl~ 125 (125)
T PF00156_consen 111 LKEAGA--KVVGVAVLV 125 (125)
T ss_dssp HHHTTB--SEEEEEEEE
T ss_pred HHhCCC--cEEEEEEEC
Confidence 999998 678777764
No 36
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.82 E-value=3.1e-08 Score=90.12 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=88.4
Q ss_pred CCChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhccC--------
Q 022183 113 GISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKG-------- 184 (301)
Q Consensus 113 ~T~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~p~-------- 184 (301)
=-+..+.+..+++|++.+.+.. .+ ++++++.||++|.+|...|.+.+..
T Consensus 57 Lis~~~I~~rI~~LA~~I~~dy-------------------~~----~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~ 113 (241)
T PTZ00149 57 LLPNGLIKDRVEKLAYDIKQVY-------------------GN----EELHILCILKGSRGFFSALVDYLNRIHNYSSTE 113 (241)
T ss_pred EeCHHHHHHHHHHHHHHHHHHc-------------------CC----CCeEEEEECCCCHHHHHHHHHHHhhhhhccccc
Confidence 3566778888888887775432 01 2678999999999988776666541
Q ss_pred --Cee---eeEEEEecCCC---C-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022183 185 --IKI---GKILIHRDGDN---G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 255 (301)
Q Consensus 185 --a~~---G~i~i~Rd~~~---~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~ 255 (301)
.++ ++|.+.+...+ + .++. ...-.+++|++|||+||++.||.|+.++++.|++.|+ ++|.+++++..+
T Consensus 114 ~~~~~~~~dfi~vsSY~~~~s~g~v~i~-~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~--~~V~va~L~~K~ 190 (241)
T PTZ00149 114 SPKPPYQEHYVRVKSYCNDESTGKLEIV-SDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEP--KTIRIATLFEKR 190 (241)
T ss_pred cCcccccccEEEEEEccCCCcCCceEEe-cccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCC--CEEEEEEEEecC
Confidence 233 88887665432 2 2333 2333378999999999999999999999999999998 789999998877
Q ss_pred HH
Q 022183 256 EG 257 (301)
Q Consensus 256 ~g 257 (301)
.+
T Consensus 191 ~~ 192 (241)
T PTZ00149 191 TP 192 (241)
T ss_pred cc
Confidence 65
No 37
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.81 E-value=4.9e-08 Score=85.89 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=75.7
Q ss_pred ceeEEEecccchHHHHHHHHhcc----CCeeeeEEEEecCC-C---C-ceeEeecCCCCCCCcEEEEEcccccchHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCK----GIKIGKILIHRDGD-N---G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQ 231 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p----~a~~G~i~i~Rd~~-~---~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ 231 (301)
+.++|+|+++|.+++..+.+.+. ...+.++..++... + + +++....++.+++|++|+|+|+++.||.|+.+
T Consensus 36 ~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~ 115 (189)
T PLN02238 36 SPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSA 115 (189)
T ss_pred CcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHH
Confidence 36899999999999988888776 35566676665532 1 2 23333356678999999999999999999999
Q ss_pred HHHHHHHcCCCCccEEEEEEEeCHHHH
Q 022183 232 AIQLLIEKGVPESHIIFLNLISAPEGI 258 (301)
Q Consensus 232 ai~~L~~~g~~~~~I~~~~~vas~~gl 258 (301)
+++.|++.|+ ++|.+++++.-+..-
T Consensus 116 ~~~~l~~~g~--~~v~~avL~dK~~~r 140 (189)
T PLN02238 116 LVAHLEAKGA--ASVSVCALLDKRARR 140 (189)
T ss_pred HHHHHHhCCC--CEEEEEEEEECCccc
Confidence 9999999998 789999988776543
No 38
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.81 E-value=7.8e-08 Score=89.80 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=79.7
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcC
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 240 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g 240 (301)
+.++|++.++|..+...+.+.+. .+...+.-.|.. ..+........+++|++|+|+||+++||+|+.++.+.|+++|
T Consensus 155 ~~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~--~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~G 231 (285)
T PRK00934 155 DPLVLAPDKGALELAKEAAEILG-CEYDYLEKTRIS--PTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQG 231 (285)
T ss_pred CCEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecC--CCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCC
Confidence 56788999999999999988885 445444333332 211212222236889999999999999999999999999999
Q ss_pred CCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEE
Q 022183 241 VPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 241 ~~~~~I~~~~~--vas~~gl~~l~~~~p~v~i~t~ 273 (301)
+ ++|.++++ +.++++.+++.+.--+ +|++.
T Consensus 232 A--~~V~~~~~H~i~~~~a~~~l~~~~i~-~i~~t 263 (285)
T PRK00934 232 A--KKVYVACVHPVLVGDAILKLYNAGVD-EIIVT 263 (285)
T ss_pred C--CEEEEEEEeeccCcHHHHHHHhCCCC-EEEEc
Confidence 9 68888885 7899999999875222 45443
No 39
>PRK05439 pantothenate kinase; Provisional
Probab=98.74 E-value=1.3e-08 Score=95.89 Aligned_cols=68 Identities=24% Similarity=0.416 Sum_probs=57.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccC---------------CCCH----HHHHHHHHhhccchhHhhcccccccccEeec
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVER---------------GRDV----DSVLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~er---------------g~~~----~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (301)
||++||||+|.|++..|++.|+...| |.+. +.+.++|.+..+|++++||.|+|..||+||+
T Consensus 217 ~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~ 296 (311)
T PRK05439 217 FDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILH 296 (311)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEe
Confidence 69999999999999998888887532 3333 3667788899999999999999999999999
Q ss_pred CCCCCch
Q 022183 62 RGGDNHV 68 (301)
Q Consensus 62 ~~~~~~~ 68 (301)
.+.++.+
T Consensus 297 ~~~~h~i 303 (311)
T PRK05439 297 KGADHSI 303 (311)
T ss_pred CCCCCce
Confidence 9887753
No 40
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.3e-07 Score=81.28 Aligned_cols=97 Identities=21% Similarity=0.356 Sum_probs=82.1
Q ss_pred cceeEEEecccchHHHHHHHHhcc-CCeeeeEEEEecCC--C--CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHH
Q 022183 160 KKLCGVSIVRSGESMENALRACCK-GIKIGKILIHRDGD--N--GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQ 234 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd~~--~--~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~ 234 (301)
+++.+|+||+++.+|.--|.+.+. +..+-|+.+++... + +.......+-.+++||+|+|+|+++.||.|+..+.+
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~ 114 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRD 114 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHHHHHH
Confidence 478999999999999877766665 78889999987743 2 234456778889999999999999999999999999
Q ss_pred HHHHcCCCCccEEEEEEEeCHHHH
Q 022183 235 LLIEKGVPESHIIFLNLISAPEGI 258 (301)
Q Consensus 235 ~L~~~g~~~~~I~~~~~vas~~gl 258 (301)
.|+.+|+ +++.+++++--|.+-
T Consensus 115 ~l~~r~a--~sv~i~tLldK~~~r 136 (178)
T COG0634 115 LLKERGA--KSVRIATLLDKPERR 136 (178)
T ss_pred HHHhCCC--CeEEEEEEeeCcccc
Confidence 9999999 799999999877653
No 41
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.66 E-value=3.1e-07 Score=87.02 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=79.1
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
+++++|+...+|......+.+.+..++...+.=+|+..+... -..+..+++||+|+|+|||+.||+|+.++.+.|+++
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~--~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~ 243 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT--VMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQR 243 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceE--EEecccCCCCCEEEEEecccCchHHHHHHHHHHHHC
Confidence 467899999999999999999886555544444444322211 233456899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
|+ ++|.+++ .+.+..+.+++.+.
T Consensus 244 GA--~~V~~~~THgvfs~~a~~~l~~s 268 (319)
T PRK04923 244 GA--LKVVAYITHPVLSGPAVDNINNS 268 (319)
T ss_pred CC--CEEEEEEECcccCchHHHHHhhC
Confidence 99 6788777 46778889999653
No 42
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.66 E-value=8e-08 Score=84.76 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=61.0
Q ss_pred ecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022183 205 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 205 ~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
.+-+.++++++|||+|+.+|||.||.+|++.++++|+ ++|+++++|++++....|.+... +++|..+..
T Consensus 116 ~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~--~~IviAVPV~p~~a~~~l~s~~D--~vvc~~~P~ 184 (220)
T COG1926 116 GRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGP--KEIVIAVPVAPEDAAAELESEAD--EVVCLYMPA 184 (220)
T ss_pred CCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCC--ceEEEEcccCCHHHHHHHHhhcC--eEEEEcCCc
Confidence 3445578999999999999999999999999999998 79999999999999999999877 777776544
No 43
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.64 E-value=3.9e-07 Score=86.43 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=77.3
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.+.++|+...+|...+..+.+.+. .+...+.-.|.+.+.....-..+-.+++|++|||+||++.||+|+.++.+.|+++
T Consensus 165 ~~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~ 243 (320)
T PRK02269 165 DDVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEA 243 (320)
T ss_pred CCcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHC
Confidence 367899999999999999998875 3443333334333221111223445789999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
|+ ++|.+++ .+.+.++++++.+.
T Consensus 244 GA--~~V~~~~tHglf~~~a~~~l~~~ 268 (320)
T PRK02269 244 GA--TEVYASCTHPVLSGPALDNIQKS 268 (320)
T ss_pred CC--CEEEEEEECcccCchHHHHHHhC
Confidence 99 6788887 57888999999764
No 44
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.62 E-value=4.9e-07 Score=85.85 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=77.9
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.++++|+...+|..++..+.+.+. +++..+...|...... -..+..+++||+|+|+||++.||+|+..|.+.|+++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~~---~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~ 244 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSERE---EGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVERE 244 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcce---eeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhC
Confidence 478999999999999999998874 4554444333322111 123556899999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
|+ ++|.+++ .+.+..+.++|.+.
T Consensus 245 GA--~~V~~~~tHgif~~~a~~~l~~s 269 (323)
T PRK02458 245 GA--TEIYAVASHGLFAGGAAEVLENA 269 (323)
T ss_pred CC--CcEEEEEEChhcCchHHHHHhhC
Confidence 99 6898888 46788889999774
No 45
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.62 E-value=3.1e-07 Score=79.20 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=69.3
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCC-------------CCceeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD-------------NGKQLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~-------------~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
+++++..+|.++...+.+.+. .+. +.+.+... .+....+.+-+...+|++|+|+||+++||+|+
T Consensus 49 ~ivgi~~~G~~~A~~la~~L~-~~~--~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl 125 (169)
T TIGR01090 49 YIVGPEARGFIFGAALAYKLG-VGF--VPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTA 125 (169)
T ss_pred EEEeehhccHHHHHHHHHHHC-CCE--EEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHH
Confidence 677888999999888877764 332 22332211 11111222223345889999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE--EeCHHHHHHHHHhCCCcEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLNL--ISAPEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~~--vas~~gl~~l~~~~p~v~i~t~ 273 (301)
.++++.|++.|+. .+.++++ .++++|.+++.+. +.+++.
T Consensus 126 ~~a~~~L~~~Ga~--~v~~~~l~~~~~~~g~~~i~~~---~~~~sl 166 (169)
T TIGR01090 126 EATDELIRKLGGE--VVEAAFLIELKDLNGRAKLEPN---VPVFSL 166 (169)
T ss_pred HHHHHHHHHcCCE--EEEEEEEEEccccChHHHhccC---CceEEE
Confidence 9999999999984 4544444 4556899999774 455543
No 46
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.54 E-value=1.8e-06 Score=81.33 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=74.5
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.+.++|+..-+|..+...+.+.+. +++..+.-.|......+.. ...-.+++|++|+|+||+++||+|+..+.+.|++.
T Consensus 160 ~~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~-~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~ 237 (301)
T PRK07199 160 PRPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEIS-LPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAA 237 (301)
T ss_pred CCcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEE-eccCcccCCCEEEEEecccCcHHHHHHHHHHHHHC
Confidence 356788888899999888887764 4443333334322112221 12234689999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
|+ ++|.+++ .+.+..+.+++.+.
T Consensus 238 GA--~~V~~~~tHgvfs~~a~~~l~~~ 262 (301)
T PRK07199 238 GA--ASPDCVVVHALFAGDAYSALAAA 262 (301)
T ss_pred CC--cEEEEEEEeeeCChHHHHHHHhC
Confidence 99 6888888 56788899999664
No 47
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.52 E-value=1e-06 Score=76.45 Aligned_cols=96 Identities=23% Similarity=0.188 Sum_probs=68.8
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC-------------ceeEeecCCCCCCCcEEEEEcccccchHH
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-------------KQLIYEKLPNDISERHVLLLDPVLATGNS 228 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-------------~~~~y~~lP~~i~~~~Vil~Dp~laTG~t 228 (301)
-+++++..+|.++...+...+. .+. +.+.+..... ....+..-....+|++|+|+||+++||+|
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~-~p~--~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T 129 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLG-IGF--VPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT 129 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhC-CCE--EEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH
Confidence 4677888999999998888764 333 3333332111 11122222233789999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEEEEeCHH--HHHHHH
Q 022183 229 ANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 262 (301)
Q Consensus 229 ~~~ai~~L~~~g~~~~~I~~~~~vas~~--gl~~l~ 262 (301)
+.++++.|++.|+ +.+.+++++..++ |.+++.
T Consensus 130 l~~~~~~l~~~Ga--~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 130 LEAAIKLLERLGA--EVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHHcCC--EEEEEEEEEEcccccchhhcC
Confidence 9999999999998 6777888887665 788876
No 48
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.52 E-value=1.2e-06 Score=82.26 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=90.2
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
.++|+==.+|..-++.+.+.+-.. .+.|.=.|+ .+..+.....+-.+++||+|+|+|||++||||++.|.+.|+++|+
T Consensus 165 ~vVVSPD~Ggv~RAr~~A~~L~~~-~a~i~K~R~-~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GA 242 (314)
T COG0462 165 PVVVSPDKGGVKRARALADRLGAP-LAIIDKRRD-SSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGA 242 (314)
T ss_pred cEEECCCccHHHHHHHHHHHhCCC-EEEEEEeec-CCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCC
Confidence 444444466777777777776544 666666676 334444556666789999999999999999999999999999999
Q ss_pred CCccEEEEE--EEeCHHHHHHHHHh-CCCcEEEEEeecCCCCCC-------CeeecCCCchhhhccCC
Q 022183 242 PESHIIFLN--LISAPEGIHCVCKR-FPSLKIVTSEIDVALNEE-------FRVIPGLGEFGDRYFGT 299 (301)
Q Consensus 242 ~~~~I~~~~--~vas~~gl~~l~~~-~p~v~i~t~~iD~~l~~~-------~~ivPGlGd~GdR~fgt 299 (301)
++|+++| .+.+....+++.+- .. =-|+|-.|... ..+ =-+-|=++++-.|+++.
T Consensus 243 --k~V~a~~tH~vfs~~a~~~l~~~~i~-~vivTnTi~~~-~~~~~~~~~~isva~liaeaI~ri~~~ 306 (314)
T COG0462 243 --KKVYAAATHGVFSGAALERLEASAID-EVIVTDTIPLP-EKKKIPKVSVISVAPLIAEAIRRIHNG 306 (314)
T ss_pred --CeEEEEEEchhhChHHHHHHhcCCCC-EEEEeCCcccc-cccccCceEEEEhHHHHHHHHHHHHcC
Confidence 7898888 35567788888764 32 12455455443 111 12345566666666543
No 49
>PRK06696 uridine kinase; Validated
Probab=98.48 E-value=1.7e-07 Score=84.18 Aligned_cols=63 Identities=32% Similarity=0.435 Sum_probs=56.8
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccc--cccccEeecCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS--KKYADVIIPRGG 64 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~--~~~ADiii~~~~ 64 (301)
+|++|||++|.++++.|++.||..+||+ .+++...|.+...|++..|+.+. +++||+||++..
T Consensus 147 ~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 147 WDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhhhhCC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 5899999999999999999999999996 56788888888999999997666 899999999866
No 50
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.46 E-value=2.8e-06 Score=80.98 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=75.4
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
+++++|+.=++|......+.+.+. .+.+.+.-.|... . ......+..+++|++|+|+||++.||+|+.++.+.|++.
T Consensus 168 ~~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~-~-~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~ 244 (332)
T PRK00553 168 KDLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKH-N-VAESINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQ 244 (332)
T ss_pred CCeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCc-c-eEeeEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHc
Confidence 467899999999999999888774 4443332223221 1 111223446789999999999999999999999999999
Q ss_pred CCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 240 GVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 240 g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
|+ ++|.+++ .+.+.++.+++.++
T Consensus 245 GA--~~V~~~atHglf~~~a~~~l~~~ 269 (332)
T PRK00553 245 KA--KKVCVMATHGLFNKNAIQLFDEA 269 (332)
T ss_pred CC--cEEEEEEEeeecCchHHHHHHhc
Confidence 99 6787777 57888999999765
No 51
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.39 E-value=4.1e-06 Score=74.28 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=71.2
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC-CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~-~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
++|++.++|.+++..+...+. .+. +.+++.... +... ....+ ...|++|+|+||+++||+|+.++++.|++.|+
T Consensus 67 ~Ivgi~~gG~~~A~~la~~L~-~~~--~~~rk~~~~~g~~~-~~~~~-~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga 141 (202)
T PRK00455 67 VVAGPATGGIPLAAAVARALD-LPA--IFVRKEAKDHGEGG-QIEGR-RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGA 141 (202)
T ss_pred EEEecccCcHHHHHHHHHHhC-CCE--EEEecccCCCCCCc-eEEcc-CCCCCEEEEEecccCCcHHHHHHHHHHHHcCC
Confidence 678999999999999888874 333 344333221 1111 11122 35699999999999999999999999999998
Q ss_pred CCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 242 PESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 242 ~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
+.+.+++++.-.+|-++..+.+ ++.++.
T Consensus 142 --~~v~~~vlv~~~~~~~~~~~~~-g~~~~s 169 (202)
T PRK00455 142 --EVVGVAVIVDRQSAAQEVFADA-GVPLIS 169 (202)
T ss_pred --EEEEEEEEEECcchHHHHHHhc-CCcEEE
Confidence 5678888888766656555544 344443
No 52
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.34 E-value=4.6e-06 Score=73.99 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=63.9
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecC-CCC--ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDG-DNG--KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~-~~~--~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
++|++-++|.+++..+...+. .+...+.-.+.. .+. +.-.+......++|++|+|+||+++||+|+.++++.|++.
T Consensus 88 ~Ivgi~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~ 166 (200)
T PRK02277 88 VVVGIAKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEH 166 (200)
T ss_pred EEEeeccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHHHHc
Confidence 678899999999999888774 333222211110 111 1112222223578999999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCHHHHHHH
Q 022183 240 GVPESHIIFLNLISAPEGIHCV 261 (301)
Q Consensus 240 g~~~~~I~~~~~vas~~gl~~l 261 (301)
|+ +.+.+++++. ..|.+++
T Consensus 167 Ga--~~v~v~vlvd-k~g~~~~ 185 (200)
T PRK02277 167 GG--KPVAVVVLID-KSGIDEI 185 (200)
T ss_pred CC--EEEEEEEEEE-Ccchhhh
Confidence 98 4455555554 4577665
No 53
>PLN02293 adenine phosphoribosyltransferase
Probab=98.33 E-value=6.3e-06 Score=72.44 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=64.7
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC-------------ceeEeecCCCCC-CCcEEEEEcccccchHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-------------KQLIYEKLPNDI-SERHVLLLDPVLATGNS 228 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-------------~~~~y~~lP~~i-~~~~Vil~Dp~laTG~t 228 (301)
+++++-.+|.++...+...+. . +++.+++..... ....+..- ..+ +|++|+|+||+++||+|
T Consensus 65 ~Ivg~e~~Gi~lA~~lA~~Lg-~--p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~-~~i~~G~rVlIVDDvitTG~T 140 (187)
T PLN02293 65 VVAGIEARGFIFGPPIALAIG-A--KFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHV-GAVEPGERALVIDDLIATGGT 140 (187)
T ss_pred EEEEeCCCchHHHHHHHHHHC-C--CEEEEEecCCCCCceEEEEEeccCCceEEEEEc-CccCCCCEEEEEeccccchHH
Confidence 456667788888877766653 2 234444432211 01111111 234 68999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEEEEeCHH--HHHHHH
Q 022183 229 ANQAIQLLIEKGVPESHIIFLNLISAPE--GIHCVC 262 (301)
Q Consensus 229 ~~~ai~~L~~~g~~~~~I~~~~~vas~~--gl~~l~ 262 (301)
+.++++.|++.|+ +.+.+++++..++ |.+++.
T Consensus 141 ~~~~~~~l~~~Ga--~~v~~~~~~~~~~~~g~~~l~ 174 (187)
T PLN02293 141 LCAAINLLERAGA--EVVECACVIELPELKGREKLN 174 (187)
T ss_pred HHHHHHHHHHCCC--EEEEEEEEEEcCCccHHHHhc
Confidence 9999999999998 5678888887555 999985
No 54
>PRK08233 hypothetical protein; Provisional
Probab=98.31 E-value=1.4e-06 Score=74.71 Aligned_cols=80 Identities=28% Similarity=0.564 Sum_probs=64.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccC-CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVER-GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~er-g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
+|+.||+++|.++++.|++.||..+. +.++...+..|...++|.|.+++++.+..||++|++ ...++.+.+.|.+
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~----~~~~e~i~~~i~~ 173 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDG----ALSVEEIINQIEE 173 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcC----CCCHHHHHHHHHH
Confidence 58999999999999999999987553 335667788899999999999999998899999975 2446667777766
Q ss_pred hcccc
Q 022183 80 KLGQH 84 (301)
Q Consensus 80 ~l~~~ 84 (301)
.+..+
T Consensus 174 ~l~~~ 178 (182)
T PRK08233 174 ELYRR 178 (182)
T ss_pred HHHhC
Confidence 65543
No 55
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.30 E-value=1.1e-05 Score=69.96 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=70.8
Q ss_pred eeEEEecccchHHHHHHHHhccCC--eeeeEEEEecCCC-CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHH
Q 022183 162 LCGVSIVRSGESMENALRACCKGI--KIGKILIHRDGDN-GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIE 238 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a--~~G~i~i~Rd~~~-~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~ 238 (301)
-+++++-++|.++...+...+... .+-.+.+.+.... +..... .....+|++|+|+||+++||+|+.++++.|++
T Consensus 56 d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~ 133 (173)
T TIGR00336 56 DVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQA 133 (173)
T ss_pred CEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHH
Confidence 367888899999999988887422 2222333333211 211111 12234789999999999999999999999999
Q ss_pred cCCCCccEEEEEEEeCHH--HHHHHHHhCCCcEEEE
Q 022183 239 KGVPESHIIFLNLISAPE--GIHCVCKRFPSLKIVT 272 (301)
Q Consensus 239 ~g~~~~~I~~~~~vas~~--gl~~l~~~~p~v~i~t 272 (301)
.|+ +-+-+++++.-.+ |-+++.+.+ ++.++.
T Consensus 134 ~Ga--~v~~~~vlvdr~~~~~~~~l~~~~-gv~~~s 166 (173)
T TIGR00336 134 AGG--QVAGVIIAVDRQERSAGQEFEKEY-GLPVIS 166 (173)
T ss_pred cCC--eEEEEEEEEecCchhHHHHHHHhc-CCeEEE
Confidence 998 4456666666544 777886543 465554
No 56
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.27 E-value=7.2e-06 Score=72.08 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
-++|++.++|.++...+...+. . .++...+... . .....-+...+|++|+|+||+++||+|+.++++.|+++|+
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L~-~--~~i~~~k~~~-~--~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga 133 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQLS-V--RSIFAEREGG-G--MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGG 133 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHhC-C--CeEEEEEeCC-c--EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCC
Confidence 3678999999999998888763 2 2344444321 1 1111111123689999999999999999999999999998
Q ss_pred CCccEEEEEEEeCHHHH
Q 022183 242 PESHIIFLNLISAPEGI 258 (301)
Q Consensus 242 ~~~~I~~~~~vas~~gl 258 (301)
+.+.+++++.-.+|-
T Consensus 134 --~vv~~~vlid~~~~~ 148 (187)
T TIGR01367 134 --QVVGLACIIDRSQGG 148 (187)
T ss_pred --eEEEEEEEEECcCCC
Confidence 567788888776554
No 57
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=98.24 E-value=1.7e-06 Score=75.44 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=50.4
Q ss_pred cCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022183 206 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 206 ~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~--~vas~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
.+-.+++||.+||+|+|+.||+|+++|.+.|+++|+ ++|++++ -+.+.++.++|.+.-=+=-|+|-.|..
T Consensus 76 ~vVGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA--~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnTIp~ 147 (184)
T PF14572_consen 76 NVVGDVKGKICIIVDDIIDTGGTLIKAAELLKERGA--KKVYACATHGVFSGDAPERLEESPIDEVVVTNTIPQ 147 (184)
T ss_dssp EEES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTE--SEEEEEEEEE---TTHHHHHHHSSESEEEEETTS--
T ss_pred EEEEEccCCeEeeecccccchHHHHHHHHHHHHcCC--CEEEEEEeCcccCchHHHHHhhcCCeEEEEeccccC
Confidence 344789999999999999999999999999999999 7898887 567788899997641122255545543
No 58
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.23 E-value=1.5e-06 Score=78.36 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN 66 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~ 66 (301)
+|++|||++|.++++.|.+.|+. ++|++.+++.+.|.+...|.+ +|++|.++.||+||++++..
T Consensus 161 ~D~vi~v~~~~~~~~~R~~~R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 161 FDFTIFLDAPAEVLRERLVARKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 48999999999999999999974 799999999999998778877 79999999999999986653
No 59
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.20 E-value=2e-05 Score=77.39 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=69.2
Q ss_pred eeEEEecccchHHHHHHHHhcc-----CCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHH
Q 022183 162 LCGVSIVRSGESMENALRACCK-----GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLL 236 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p-----~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L 236 (301)
.++|+==.+|..-...+.+.+- ++.+..+.=+|+..+ +..-..+..+++|++|||+|||+.||+|+..|.+.|
T Consensus 281 pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~--~v~~~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~L 358 (439)
T PTZ00145 281 PVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPN--EIEKMDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQL 358 (439)
T ss_pred cEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCC--ceEEEeccCCCCCCEEEEEcceeCcHHHHHHHHHHH
Confidence 3444444455666677766664 244433322333222 222344567899999999999999999999999999
Q ss_pred HHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 237 IEKGVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 237 ~~~g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
++.|+ ++|.+++ .+.+..+.++|.+.
T Consensus 359 k~~GA--~~V~~~~THglfs~~A~~rl~~s 386 (439)
T PTZ00145 359 KKHGA--RRVFAFATHGLFSGPAIERIEAS 386 (439)
T ss_pred HHcCC--CEEEEEEEcccCChhHHHHHhcC
Confidence 99999 6888887 46778999999664
No 60
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.17 E-value=1.2e-05 Score=68.63 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEec--CCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRD--GDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd--~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.++|+++|+|+.+...+.+.+.--.+.++.+.+. +.++ .....+-+ ..+|++|+|+|++++||+|+..+.+.+.+
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~-~~~~~~~~-~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~- 109 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQG-ELKVLKRA-EGDGEGFLVVDDLVDTGGTARAVREMYPK- 109 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCC-cEEEecCC-CcCcCEEEEEeeeeCCHHHHHHHHHHHhh-
Confidence 5889999999999988888875222444555443 2223 12122222 46899999999999999999999998853
Q ss_pred CCCCccEEEEEEEeCHHHH
Q 022183 240 GVPESHIIFLNLISAPEGI 258 (301)
Q Consensus 240 g~~~~~I~~~~~vas~~gl 258 (301)
+.++++...+.+-
T Consensus 110 ------v~~a~l~~K~~~~ 122 (156)
T PRK09177 110 ------AHFATVYAKPAGR 122 (156)
T ss_pred ------CCEEEEEECcCCC
Confidence 6678887776653
No 61
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=98.12 E-value=4.2e-05 Score=66.20 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=66.5
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCC-CCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD-NGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~-~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
+++++-.+|.++...+...+. .+ ++.+++... .+....+ ..+++|++|+|+||+++||+|+.++++.|++.|+
T Consensus 59 ~Vvg~~~gGi~~A~~~a~~l~-~p--~~~~rK~~k~~g~~~~~---~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga 132 (170)
T PRK13811 59 VVAGVAVGGVPLAVAVSLAAG-KP--YAIIRKEAKDHGKAGLI---IGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132 (170)
T ss_pred EEEecCcCcHHHHHHHHHHHC-CC--EEEEecCCCCCCCcceE---EcccCCCEEEEEEecccccHHHHHHHHHHHHCCC
Confidence 567777889999988887763 33 344544322 2211111 1246899999999999999999999999999998
Q ss_pred CCccEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 022183 242 PESHIIFLNLISAPEGIHCVCKRFPSLKIV 271 (301)
Q Consensus 242 ~~~~I~~~~~vas~~gl~~l~~~~p~v~i~ 271 (301)
. =+-+++++--.+|-.+..+.+ ++.+.
T Consensus 133 ~--v~~~~~~vdr~~g~~~~l~~~-gv~~~ 159 (170)
T PRK13811 133 V--VDDVVTVVDREQGAEELLAEL-GITLT 159 (170)
T ss_pred e--EEEEEEEEECCccHHHHHHhc-CCcEE
Confidence 3 345556666665645444443 34443
No 62
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=98.10 E-value=1.6e-05 Score=69.22 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=63.8
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC---------------C-ceeEee-c-CCCCCCCcEEEEEccccc
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN---------------G-KQLIYE-K-LPNDISERHVLLLDPVLA 224 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~---------------~-~~~~y~-~-lP~~i~~~~Vil~Dp~la 224 (301)
++|++.++|.++...+.+.+. ++. +.+++...+ + ....+. . .+..++|++|+|+||+++
T Consensus 55 ~Iv~v~~gGiplA~~lA~~L~-~p~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiit 131 (178)
T PRK07322 55 VLVTPETKGIPLAHALSRRLG-KPY--VVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVS 131 (178)
T ss_pred EEEEeccCCHHHHHHHHHHHC-CCE--EEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEecccc
Confidence 678888889999888877654 332 333332211 0 111111 1 122468999999999999
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHH
Q 022183 225 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 261 (301)
Q Consensus 225 TG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l 261 (301)
||+|+.++++.|++.|+ +.+.+++++.-.+.-+++
T Consensus 132 TG~Tl~aa~~~L~~~GA--~~V~~~~v~~~~~~~~~~ 166 (178)
T PRK07322 132 TGGTLTALERLVERAGG--QVVAKAAIFAEGDASNRL 166 (178)
T ss_pred ccHHHHHHHHHHHHcCC--EEEEEEEEEEcCCCCCCC
Confidence 99999999999999998 567777777665544433
No 63
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=98.10 E-value=5.4e-05 Score=65.94 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=66.3
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC-C-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~-~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
.+++++.-+|.+++..+...+- .+ .+.+++.... + .+.....+ .+|++|+|+||+++||+|+.++++.|++.
T Consensus 60 d~ivg~~~ggi~lA~~lA~~l~-~p--~~~~rk~~k~yg~~~~~~g~~---~~g~~VlIVDDvitTG~Tl~~~~~~l~~~ 133 (176)
T PRK13812 60 TKLAGVALGAVPLVAVTSVETG-VP--YVIARKQAKEYGTGNRIEGRL---DEGEEVVVLEDIATTGQSAVDAVEALREA 133 (176)
T ss_pred CEEEEeecchHHHHHHHHHHHC-CC--EEEEeccCCcCCCCCeEEecC---CCcCEEEEEEEeeCCCHHHHHHHHHHHHC
Confidence 3677788899999888877653 33 3444443222 2 12222222 27899999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 240 GVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 240 g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
|+ +-+-+++++--.+|-.+..+.+ ++.+++
T Consensus 134 Ga--~vv~~~vlvdr~~~~~~~l~~~-g~~v~s 163 (176)
T PRK13812 134 GA--TVNRVLVVVDREEGARENLADH-DVELEA 163 (176)
T ss_pred CC--eEEEEEEEEECCcchHHHHHhc-CCcEEE
Confidence 98 3455555665554544333333 455544
No 64
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=98.03 E-value=6.5e-05 Score=68.47 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=66.7
Q ss_pred eeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCc-------------eeEeecCCC--CCCCcEEEEEcccccch
Q 022183 162 LCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-------------QLIYEKLPN--DISERHVLLLDPVLATG 226 (301)
Q Consensus 162 i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~-------------~~~y~~lP~--~i~~~~Vil~Dp~laTG 226 (301)
-+++++...|.+++..+...+- ++. +.++++...+. ......+|. -.+|++|+|+||+++||
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L~-~p~--vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG 189 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYFG-ADL--VYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSG 189 (238)
T ss_pred CEEEEECcccHHHHHHHHHHHC-cCE--EEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccC
Confidence 3677888899999988877763 332 44444322111 011122332 24689999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeCHH-HHHHHHHhC
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISAPE-GIHCVCKRF 265 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas~~-gl~~l~~~~ 265 (301)
+|+.++++.+++.|+ +-+-+++++...+ |.+++.+.+
T Consensus 190 ~Tl~~~~~ll~~~ga--~vvgv~vlv~~~~~~~~~l~~~~ 227 (238)
T PRK08558 190 ETQRALLDLARQAGA--DVVGVFFLIAVGEVGIDRAREET 227 (238)
T ss_pred HHHHHHHHHHHHcCC--EEEEEEEEEecCchHHHHHhHhc
Confidence 999999999999998 3355555665544 488887654
No 65
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.97 E-value=9.3e-05 Score=67.24 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=62.7
Q ss_pred eEEEecccchHHHHHHHHhccC---CeeeeEE--EEecCC--------C-C-ceeEee--cCCCCCCCcEEEEEcccccc
Q 022183 163 CGVSIVRSGESMENALRACCKG---IKIGKIL--IHRDGD--------N-G-KQLIYE--KLPNDISERHVLLLDPVLAT 225 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~---a~~G~i~--i~Rd~~--------~-~-~~~~y~--~lP~~i~~~~Vil~Dp~laT 225 (301)
++|++-+.|.+++..+.+.+-. .++++.. .++++- + + ....+. +....++|++|+|+||+++|
T Consensus 87 vIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitT 166 (233)
T PRK06031 87 VVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLPLLEGRRVALIDDVISS 166 (233)
T ss_pred EEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccccCCCCEEEEEEeEccc
Confidence 6778888899998887777642 2332211 111110 0 1 111121 12224689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHH-HHHHHhCC
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGI-HCVCKRFP 266 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl-~~l~~~~p 266 (301)
|+|+.++++.|++.|+. -+-+++++.-.++- +++.+.-|
T Consensus 167 G~Tl~aa~~lL~~~Ga~--Vvgv~v~v~~g~~~~~~l~~~~~ 206 (233)
T PRK06031 167 GASIVAGLRLLAACGIE--PAGIGAAMLQSERWRESLAAAGP 206 (233)
T ss_pred cHHHHHHHHHHHHcCCe--EEEEEEEEEccccHHHHHHhcCC
Confidence 99999999999999983 34444445444444 45554444
No 66
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=97.94 E-value=3e-05 Score=73.74 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=50.5
Q ss_pred cCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHh
Q 022183 206 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKR 264 (301)
Q Consensus 206 ~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~--~vas~~gl~~l~~~ 264 (301)
.+..+++|++|+|+||+++||+|+..+.+.|++.|+ ++|.+++ .+.+.++.+++.+.
T Consensus 223 ~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga--~~V~~~~THglfs~~a~~~l~~~ 281 (326)
T PLN02297 223 IKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGA--AKVSAYVTHGVFPNESWERFTHD 281 (326)
T ss_pred ecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCC--cEEEEEEECcccChhHHHHHHhc
Confidence 355688999999999999999999999999999999 6888887 57888999999763
No 67
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.89 E-value=5.4e-05 Score=66.74 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=64.8
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC----ceeEeecCCCC-CCCcEEEEEcccccchHHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG----KQLIYEKLPND-ISERHVLLLDPVLATGNSANQAIQL 235 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~----~~~~y~~lP~~-i~~~~Vil~Dp~laTG~t~~~ai~~ 235 (301)
+=++|.|.|+|+-..+-+...+--.++..|.+..-..++ .......+|-+ +.|++|+|+|++..||.|+..|.+.
T Consensus 30 PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~ 109 (192)
T COG2236 30 PDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEE 109 (192)
T ss_pred CCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHHHHHH
Confidence 458999999999999999999877677777776665543 11223334444 8899999999999999999999999
Q ss_pred HHHcCCCC
Q 022183 236 LIEKGVPE 243 (301)
Q Consensus 236 L~~~g~~~ 243 (301)
|++..+.+
T Consensus 110 l~~~~p~e 117 (192)
T COG2236 110 LKKLAPAE 117 (192)
T ss_pred HHhhCchh
Confidence 99955543
No 68
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=97.88 E-value=4.9e-05 Score=65.42 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=66.6
Q ss_pred eEEEecccchHHHHHHHHhcc-CCeeeeEEEEecC-CCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcC
Q 022183 163 CGVSIVRSGESMENALRACCK-GIKIGKILIHRDG-DNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 240 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd~-~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g 240 (301)
++|.|--+|.|++......+- +..+.+=-=.|.+ ..+..-.+..--..++||.++++|+++.||.|+..+|+.|++.|
T Consensus 89 vVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvittG~Ti~E~Ie~lke~g 168 (203)
T COG0856 89 VVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEG 168 (203)
T ss_pred EEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEecccccChhHHHHHHHHHHcC
Confidence 566777899999877766653 2222210001111 11111123333347889999999999999999999999999999
Q ss_pred CCCccEEEEEEEeCHHHHHHHH
Q 022183 241 VPESHIIFLNLISAPEGIHCVC 262 (301)
Q Consensus 241 ~~~~~I~~~~~vas~~gl~~l~ 262 (301)
..+ +++++++...|+..+.
T Consensus 169 ~kp---v~v~VL~dK~G~dei~ 187 (203)
T COG0856 169 GKP---VLVVVLADKKGVDEIE 187 (203)
T ss_pred CCc---EEEEEEEccCCccccc
Confidence 843 7788999999998874
No 69
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=97.87 E-value=0.00017 Score=63.33 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHHhC
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCKRF 265 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~--~gl~~l~~~~ 265 (301)
..+|++|+|+||+++||+|+.++++.|++.|+ +-+-+++++.-. .|-+++.+.+
T Consensus 111 ~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa--~vv~v~~vvd~~~~~g~~~l~~~~ 166 (187)
T PRK12560 111 IEKGDRVAIIDDTLSTGGTVIALIKAIENSGG--IVSDVICVIEKTQNNGRKKLFTQT 166 (187)
T ss_pred CCCcCEEEEEEeccccCHHHHHHHHHHHHCCC--EEEEEEEEEEecccchHHHHhhcc
Confidence 34789999999999999999999999999998 345555566543 4677775433
No 70
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=97.82 E-value=0.00033 Score=61.60 Aligned_cols=99 Identities=18% Similarity=0.332 Sum_probs=62.1
Q ss_pred EEEecccchHHHHHHHHhccCCeeeeEEEEecCCC-C-ceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 164 GVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-G-KQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 164 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~-~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
++.+--+|.|+..++...+ + ++.+.+++.... + ...+...+ .+|++|+|+||+++||+|+.++++.+++.|+
T Consensus 77 I~g~~~~GiplA~~vA~~l-~--~p~v~vRK~~k~~g~~~~~~g~~---~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 77 VAGVELGGVPLATAVSLET-G--LPLLIVRKSVKDYGTGSRFVGDL---KPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred EEEEccchHHHHHHHHHHh-C--CCEEEEecCCCccCCCceEEccC---CCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 4455567888877766654 2 444556554222 2 12222222 2689999999999999999999999999998
Q ss_pred CCccEEEEEEEeCHHH-HHHHHHhCCCcEEEE
Q 022183 242 PESHIIFLNLISAPEG-IHCVCKRFPSLKIVT 272 (301)
Q Consensus 242 ~~~~I~~~~~vas~~g-l~~l~~~~p~v~i~t 272 (301)
. =+-+++++--.+| -+++ +++ .++++.
T Consensus 151 ~--V~~v~vlvdr~~g~~~~l-~~~-gi~~~s 178 (187)
T PRK13810 151 Y--IKYVITVVDREEGAEENL-KEA-DVELVP 178 (187)
T ss_pred E--EEEEEEEEECCcChHHHH-HHc-CCcEEE
Confidence 2 3444555554444 4555 444 344443
No 71
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=97.82 E-value=0.0001 Score=73.53 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=58.9
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC-------------C-ceeEeecCCCCCCCcEEEEEcccccchHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN-------------G-KQLIYEKLPNDISERHVLLLDPVLATGNS 228 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~-------------~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t 228 (301)
++||+=.+|.+.+.++.+.+. .+.. .++.|+..+ . ........+..++||+|+|+||+++||+|
T Consensus 291 ~Vv~vPdsg~~~A~~~A~~lg-ip~~-~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGtT 368 (469)
T PRK05793 291 IVIGVPDSGIPAAIGYAEASG-IPYG-IGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGTT 368 (469)
T ss_pred EEEEcCccHHHHHHHHHHHhC-CCEe-eeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchHH
Confidence 566777788888888877653 3332 233333211 1 12333455567899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEE
Q 022183 229 ANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 229 ~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
+.++++.|++.|+ ++|.+++
T Consensus 369 l~~~~~~Lr~aGA--k~V~~~~ 388 (469)
T PRK05793 369 SKRLVELLRKAGA--KEVHFRV 388 (469)
T ss_pred HHHHHHHHHHcCC--CEEEEEE
Confidence 9999999999999 4565555
No 72
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=97.80 E-value=0.00028 Score=62.99 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=58.8
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC--c-eeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHc
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG--K-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~--~-~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
+++.+-.+|.++...+...+ +.+ .+.+ |-+.++ . ...... ....+|++|+|+||+++||+|+.++++.|++.
T Consensus 70 ~IvG~~~~Gi~~A~~vA~~l-~~p--~~~~-RK~~K~~G~~~~~~~~-g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~ 144 (206)
T PRK13809 70 LLCGVPYTALTLATSISLKY-NIP--MVLR-RKELKNVDPSDAIKVE-GLFTPGQTCLVINDMVSSGKSIIETAVALEEE 144 (206)
T ss_pred EEEEecCccHHHHHHHHHHh-CCC--EEEE-eCCCCCCCCcCEEEEc-cccCCCCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 34455566999988877654 232 2333 433322 1 111111 11247899999999999999999999999999
Q ss_pred CCCCccEEEEEEEeCH-HHHHHHHH
Q 022183 240 GVPESHIIFLNLISAP-EGIHCVCK 263 (301)
Q Consensus 240 g~~~~~I~~~~~vas~-~gl~~l~~ 263 (301)
|. +-+.+++++--. .|.+++..
T Consensus 145 G~--~vv~v~vlvdr~~~~~~~l~~ 167 (206)
T PRK13809 145 GL--VVREALVFLDRQKGACQPLGP 167 (206)
T ss_pred CC--EEEEEEEEEECcccHHHHHHh
Confidence 98 334455555433 45566644
No 73
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=97.75 E-value=0.00016 Score=71.72 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=67.4
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecC---CC---C--------ceeEeecCCCCCCCcEEEEEcccccchHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDG---DN---G--------KQLIYEKLPNDISERHVLLLDPVLATGNS 228 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~---~~---~--------~~~~y~~lP~~i~~~~Vil~Dp~laTG~t 228 (301)
++||+=.+|.+.+.++.+.+.- +.- ..+.|.. .+ . ..+.....+..++||+|+|+||+++||+|
T Consensus 278 ~Vv~vPd~g~~~A~~~A~~lgi-p~~-~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLVDDvitTG~T 355 (445)
T PRK08525 278 FVVPVPDSGVPAAIGYAQESGI-PFE-MAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVIDDSIVRGTT 355 (445)
T ss_pred eEEECCchHHHHHHHHHHHhCC-Ccc-ceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEEecccCcHHH
Confidence 4555556788888888877642 111 1122222 11 0 11222344445899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCc-EEEEEe
Q 022183 229 ANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSL-KIVTSE 274 (301)
Q Consensus 229 ~~~ai~~L~~~g~~~~~I~~~~--~vas~~gl~~l~~~~p~v-~i~t~~ 274 (301)
+.++++.|++.|+ ++|.+++ .+.+......+. +|.+ ++++..
T Consensus 356 l~~a~~~Lr~aGA--~~V~v~~~hp~~~~~~~~~i~--~~~~~~li~~~ 400 (445)
T PRK08525 356 SKKIVSLLRAAGA--KEIHLRIACPEIKFPCYYGID--TPTFEELISAN 400 (445)
T ss_pred HHHHHHHHHhcCC--CEEEEEEECCCcCCchhhhCc--CCChhhEEEcC
Confidence 9999999999999 5666655 444556666663 3544 366553
No 74
>PLN02440 amidophosphoribosyltransferase
Probab=97.73 E-value=0.00016 Score=72.40 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=58.4
Q ss_pred eEEEecccchHHHHHHHHhcc-CCeeeeEEEEecC-CC----------C-ceeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCK-GIKIGKILIHRDG-DN----------G-KQLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd~-~~----------~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
++||+..+|..++.++.+.+. ....+.+- .|.. .+ . ...........++||+|+|+||++.||.|+
T Consensus 278 ~vvpVP~s~~~~A~~la~~lgiP~~~~lvr-~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittGtTl 356 (479)
T PLN02440 278 VVIPVPDSGRVAALGYAAKLGVPFQQGLIR-SHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRGTTS 356 (479)
T ss_pred EEEEeCCcHHHHHHHHHHHhCCCchhheEE-EeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcHHHH
Confidence 578888888888888877753 12233332 1211 11 1 112222222458999999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
.++++.|++.|+ ++|.+++.
T Consensus 357 ~~i~~~L~~aGa--~~V~v~v~ 376 (479)
T PLN02440 357 SKIVRMLREAGA--KEVHMRIA 376 (479)
T ss_pred HHHHHHHHhcCC--CEEEEEEE
Confidence 999999999998 56766665
No 75
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=97.68 E-value=6.5e-05 Score=65.94 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=36.5
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
.+++++|+|+||++.||+|+.++.+.|++.|+ ++|.++++
T Consensus 149 ~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga--~~V~~~~l 188 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGATLHEIARLLLELGA--ASVQVWTL 188 (190)
T ss_pred CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCC--CEEEEEEE
Confidence 47899999999999999999999999999999 67877775
No 76
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=97.66 E-value=0.0003 Score=70.36 Aligned_cols=85 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred eEEEecccchHHHHHHHHhcc-CCeeeeEEEEec-CCC--------C---ceeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCK-GIKIGKILIHRD-GDN--------G---KQLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd-~~~--------~---~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
++|||..+|.+++.++.+.+- ....+.+-- |. ..| . .+..+......++||+|+|+||++.||.|+
T Consensus 298 ~Vv~VP~sg~~~A~~la~~lgip~~~~lir~-~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~Tl 376 (479)
T PRK09123 298 VVVPVPDSGVPAAIGYAQESGIPFELGIIRN-HYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGTTS 376 (479)
T ss_pred EEEEcCccHHHHHHHHHHhcCCCeeheEEEE-eecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchHHH
Confidence 688999999999999888643 122332211 11 011 1 122233344458899999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~ 250 (301)
.++++.|++.|+ ++|.+++
T Consensus 377 ~~~~~~l~~~Ga--~~v~~~~ 395 (479)
T PRK09123 377 RKIVQMLRDAGA--KEVHLRI 395 (479)
T ss_pred HHHHHHHHHcCC--CEEEEEE
Confidence 999999999999 5677655
No 77
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=97.66 E-value=0.00013 Score=67.74 Aligned_cols=93 Identities=22% Similarity=0.178 Sum_probs=68.4
Q ss_pred eecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCCCcEEEEE--eecCCC
Q 022183 204 YEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFPSLKIVTS--EIDVAL 279 (301)
Q Consensus 204 y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~--~vas~~gl~~l~~~~p~v~i~t~--~iD~~l 279 (301)
-.-|-.|++||.++|+|||+.|++|+..|.+.|.++|+ ++|+.++ .|.++..++++.+..=+-.++|. ++|+..
T Consensus 205 ~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA--~kV~a~~THgVfs~~a~er~~~s~~~~~vvtnt~p~~~~~ 282 (316)
T KOG1448|consen 205 RMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGA--KKVYAIVTHGVFSGPAIERLNESALDRVVVTNTIPIDDSC 282 (316)
T ss_pred EEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCC--ceEEEEEcceeccccHHHHhhhcccceEEEEEeecccccc
Confidence 34455799999999999999999999999999999999 6787777 78999999999887444344444 444444
Q ss_pred CCCC----eeecCCCchhhhccC
Q 022183 280 NEEF----RVIPGLGEFGDRYFG 298 (301)
Q Consensus 280 ~~~~----~ivPGlGd~GdR~fg 298 (301)
-+.. -+.|=++-+--|..+
T Consensus 283 ~~~~~~~Idvs~~~ae~irr~h~ 305 (316)
T KOG1448|consen 283 LEPKLTTIDVSPVLAEAIRRTHN 305 (316)
T ss_pred cCCcccEEeeccccchheEEecC
Confidence 3211 245556666666554
No 78
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=97.62 E-value=0.001 Score=58.64 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=58.8
Q ss_pred EEEecccchHHHHHHHHhccCCeeeeEEEEecCC-CCc----eeE---e-------ecCCC--CCCCcEEEEEcccccch
Q 022183 164 GVSIVRSGESMENALRACCKGIKIGKILIHRDGD-NGK----QLI---Y-------EKLPN--DISERHVLLLDPVLATG 226 (301)
Q Consensus 164 ~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~-~~~----~~~---y-------~~lP~--~i~~~~Vil~Dp~laTG 226 (301)
++++--.|.++...+...+ ..+++.+++... ... ..+ | .-++. -.+|++|+|+||+++||
T Consensus 54 Vv~~ea~Gi~la~~lA~~L---g~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtTG 130 (191)
T TIGR01744 54 IVTIEASGIAPAIMTGLKL---GVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANG 130 (191)
T ss_pred EEEEccccHHHHHHHHHHH---CCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhccC
Confidence 4566667777776665554 244455555422 110 000 0 01222 12689999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHH
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 263 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas~--~gl~~l~~ 263 (301)
+|+.++++.+++.|+. =+-+++++.-+ .|-+++.+
T Consensus 131 gT~~a~~~ll~~aGa~--Vvgv~~lvd~~~~~g~~~l~~ 167 (191)
T TIGR01744 131 QAAHGLVDIAKQAGAK--IAGIGIVIEKSFQNGRQELVE 167 (191)
T ss_pred hHHHHHHHHHHHCCCE--EEEEEEEEEecCccHHHHHHh
Confidence 9999999999999983 24444455433 47677754
No 79
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.0004 Score=60.61 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=57.4
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC---c----------eeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG---K----------QLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~---~----------~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
.+|.+-+.|.++...+...+- ++++-+++..... . ...+..-+.--+|.+|+|+||.++||+|+
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lg---vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~ 132 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELG---VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTA 132 (179)
T ss_pred EEEEEccccchhHHHHHHHhC---CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHH
Confidence 567777888888877776654 5556665543221 0 11111222222589999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEEEeC
Q 022183 230 NQAIQLLIEKGVPESHIIFLNLISA 254 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~~vas 254 (301)
.+.++.+.+.|. .+.-++.+..
T Consensus 133 ~a~~~Ll~~~ga---~vvg~~~~ie 154 (179)
T COG0503 133 LALIELLEQAGA---EVVGAAFVIE 154 (179)
T ss_pred HHHHHHHHHCCC---EEEEEEEEEE
Confidence 999999999998 3555554433
No 80
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.00022 Score=61.26 Aligned_cols=94 Identities=15% Similarity=0.196 Sum_probs=71.8
Q ss_pred cceeEEEecccchHHHHHHHHhccC--------CeeeeEEEEecC---CCC-ceeEeecCCCCCCCcEEEEEcccccchH
Q 022183 160 KKLCGVSIVRSGESMENALRACCKG--------IKIGKILIHRDG---DNG-KQLIYEKLPNDISERHVLLLDPVLATGN 227 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~--------a~~G~i~i~Rd~---~~~-~~~~y~~lP~~i~~~~Vil~Dp~laTG~ 227 (301)
+++.++-++.+|--|...+.+-+.+ ..+.||-+.... +|+ .+..-......++||+|+|+++++.||.
T Consensus 60 ~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGr 139 (216)
T KOG3367|consen 60 KPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGR 139 (216)
T ss_pred CceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccc
Confidence 4788899999998887666665432 335666665332 244 3555555556899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022183 228 SANQAIQLLIEKGVPESHIIFLNLISAP 255 (301)
Q Consensus 228 t~~~ai~~L~~~g~~~~~I~~~~~vas~ 255 (301)
|+...+..+++.++ +.+++++++..+
T Consensus 140 Tl~~Lls~~~~~k~--~~v~vasLL~Kr 165 (216)
T KOG3367|consen 140 TLSTLLSHMKAYKP--SMVKVASLLVKR 165 (216)
T ss_pred hHHHHHHHHHhcCc--cceeeeeecccc
Confidence 99999999999998 789999987543
No 81
>PRK11595 DNA utilization protein GntX; Provisional
Probab=97.59 E-value=0.00012 Score=66.13 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=38.5
Q ss_pred CCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEe
Q 022183 209 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLIS 253 (301)
Q Consensus 209 ~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~va 253 (301)
.+++|++|+|+||+++||.|+..+.+.|++.|+ ++|.++++..
T Consensus 183 ~~~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~--~~V~~~~la~ 225 (227)
T PRK11595 183 LPVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGA--ASVQVWCLCR 225 (227)
T ss_pred CCCCCCEEEEEeeeecchHHHHHHHHHHHHcCC--cEEEEEEEEe
Confidence 457899999999999999999999999999998 6788887754
No 82
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=97.58 E-value=0.0015 Score=57.46 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=60.0
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC---Ccee---E--e-------ecCCC-CC-CCcEEEEEcccccc
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN---GKQL---I--Y-------EKLPN-DI-SERHVLLLDPVLAT 225 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~---~~~~---~--y-------~~lP~-~i-~~~~Vil~Dp~laT 225 (301)
+++.+--+|.++...+...+- .+++.+++.... +..+ + | ..++. .+ +|++|+|+||+++|
T Consensus 53 ~Ivg~e~~GiplA~~lA~~Lg---~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaT 129 (189)
T PRK09219 53 KILTIEASGIAPAVMAALALG---VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLAN 129 (189)
T ss_pred EEEEEccccHHHHHHHHHHHC---CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhc
Confidence 456677788888877766542 333555554322 1100 0 0 11122 12 68999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeCH--HHHHHHHH
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLISAP--EGIHCVCK 263 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~vas~--~gl~~l~~ 263 (301)
|+|+.++++.+++.|+. =+-+++++.-. .|-+++.+
T Consensus 130 GgT~~a~~~lv~~aGa~--vvgv~~lvd~~~~~g~~~l~~ 167 (189)
T PRK09219 130 GQAALGLIDIIEQAGAK--VAGIGIVIEKSFQDGRKLLEE 167 (189)
T ss_pred ChHHHHHHHHHHHCCCE--EEEEEEEEEccCccHHHHHHh
Confidence 99999999999999983 23444455433 47777744
No 83
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.54 E-value=0.00015 Score=59.57 Aligned_cols=62 Identities=23% Similarity=0.411 Sum_probs=53.9
Q ss_pred CCeEEEEeCCchhHHHHHhhhcccc-CCCCHHHHHHHHHhhccchhHhhccccc-ccccEeecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSK-KYADVIIPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~e-rg~~~~~v~~~~~~~~~p~~~~~i~P~~-~~ADiii~~ 62 (301)
.|+.||+++|.++|..|...|+... +|.+.+++.+++...-++.+..|..|++ ..-|++|+.
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 3799999999999999999999542 3789999999999988999999999998 455688875
No 84
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.0015 Score=57.97 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=61.6
Q ss_pred EEecccchHHHHHHHHhc-cCCeeeeEEEEecCCCC--c-eeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcC
Q 022183 165 VSIVRSGESMENALRACC-KGIKIGKILIHRDGDNG--K-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 240 (301)
Q Consensus 165 V~IlRaG~~m~~~l~~~~-p~a~~G~i~i~Rd~~~~--~-~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g 240 (301)
+..--+|.|+...+...+ .. +. ..+.|-+... . ...-...+ +|++|+++||++.||+|+..|++.|++.|
T Consensus 66 ~G~a~ggiP~A~~~a~~l~~~-~~--~~~~Rke~K~hG~~~~ieG~~~---~G~kVvvVEDViTTG~Si~eai~~l~~~G 139 (201)
T COG0461 66 AGPALGGIPLAAATALALAHL-PP--MAYVRKEAKDHGTGGLIEGGEV---KGEKVVVVEDVITTGGSILEAVEALREAG 139 (201)
T ss_pred EeccccchHHHHHHHHHhccC-Cc--EEEEeceeccCCCcceeEecCC---CCCEEEEEEecccCCHhHHHHHHHHHHcC
Confidence 334456777776665555 22 22 4455555332 2 12122222 79999999999999999999999999999
Q ss_pred CCCccEEEEEEEeCHHHHHHHHHhC
Q 022183 241 VPESHIIFLNLISAPEGIHCVCKRF 265 (301)
Q Consensus 241 ~~~~~I~~~~~vas~~gl~~l~~~~ 265 (301)
.. =.-+++++--.+|.+...+++
T Consensus 140 ~~--V~gv~~ivDR~~~~~~~~~~~ 162 (201)
T COG0461 140 AE--VVGVAVIVDRQSGAKEVLKEY 162 (201)
T ss_pred Ce--EEEEEEEEecchhHHHHHHhc
Confidence 83 345556666668888777754
No 85
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=97.51 E-value=0.00018 Score=65.07 Aligned_cols=47 Identities=40% Similarity=0.637 Sum_probs=39.6
Q ss_pred CCCCCCC-cEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCH
Q 022183 207 LPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAP 255 (301)
Q Consensus 207 lP~~i~~-~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~ 255 (301)
++...+. ++|+|+||++.||+|+..+.+.|++.|+ ++|.+.++..++
T Consensus 177 ~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga--~~v~~~~lar~~ 224 (225)
T COG1040 177 LKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGA--KRVFVLTLARAP 224 (225)
T ss_pred cCCCCCCCCeEEEEecccccHHHHHHHHHHHHHcCC--ceEEEEEEEecC
Confidence 3334444 8999999999999999999999999998 789888876554
No 86
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=97.50 E-value=0.00052 Score=67.98 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=55.1
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCC------CC------ceeEeecCCCCCCCcEEEEEcccccchHHHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD------NG------KQLIYEKLPNDISERHVLLLDPVLATGNSAN 230 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~------~~------~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~ 230 (301)
++||+=.+|.+.+.++.+.+. .+.. .++.|+.. +. ....+..+...++||+|+|+||++.||+|+.
T Consensus 274 ~Vv~VPdsg~~~A~~~a~~lg-ip~~-~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl~ 351 (442)
T PRK08341 274 VVIAVPDSGRTAALGFAHESG-IPYM-EGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTMK 351 (442)
T ss_pred eEEEecCchHHHHHHHHHHhC-CCch-heEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccHHHHH
Confidence 456666677777777777653 1111 12233221 10 1222344456688999999999999999999
Q ss_pred HHHHHHHHcCCCCccEEEEE
Q 022183 231 QAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 231 ~ai~~L~~~g~~~~~I~~~~ 250 (301)
++++.|++.|+ ++|.+..
T Consensus 352 ~~~~~L~~aGA--k~V~~~~ 369 (442)
T PRK08341 352 RIVKMLRDAGA--REVHVRI 369 (442)
T ss_pred HHHHHHHhcCC--cEEEEEE
Confidence 99999999999 4555544
No 87
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=97.47 E-value=0.00044 Score=69.57 Aligned_cols=86 Identities=13% Similarity=0.208 Sum_probs=56.0
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecC--CCC-----------ceeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDG--DNG-----------KQLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~--~~~-----------~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
++||+-.+|..++.++.+.+. .+...-.+++.. .+. .+..+.-.+..++||+|+|+||++.||.|+
T Consensus 296 ~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaTl 374 (501)
T PRK09246 296 VVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTS 374 (501)
T ss_pred EEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHHH
Confidence 456666667778877776653 111111122111 110 011223235568999999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
.++++.|++.|+ ++|.++++
T Consensus 375 ~~~~~~L~~aGA--~~V~v~v~ 394 (501)
T PRK09246 375 EQIVQMAREAGA--KKVYFASA 394 (501)
T ss_pred HHHHHHHHHcCC--CEEEEEEE
Confidence 999999999999 57777764
No 88
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=97.43 E-value=0.0019 Score=59.85 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=63.6
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC--Cc--eeEeec----------CCC-C-CCCcEEEEEcccccch
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN--GK--QLIYEK----------LPN-D-ISERHVLLLDPVLATG 226 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~--~~--~~~y~~----------lP~-~-i~~~~Vil~Dp~laTG 226 (301)
+++.+--.|.|++..+...+. +.++.++++.+. ++ ...|.. ++. . .+|++|+|+||+++||
T Consensus 131 ~VvgvetkGIpLA~avA~~L~---vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 131 AVMTVATKGIPLAYAVASVLN---VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred EEEEEccchHHHHHHHHHHHC---CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccC
Confidence 566777889999888777653 445667666442 11 112211 111 1 3589999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHH
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 261 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l 261 (301)
+|+.++++.+++.|+ +=+-+++++...+|-+++
T Consensus 208 gTi~a~i~Ll~e~Ga--~VvGv~vlve~~~~~~~l 240 (268)
T TIGR01743 208 GTINGMINLLDEFDA--EVAGIGVLIDNEGVDEKL 240 (268)
T ss_pred HHHHHHHHHHHHCCC--EEEEEEEEEECCCChHHc
Confidence 999999999999998 224445566666665555
No 89
>PRK09213 pur operon repressor; Provisional
Probab=97.28 E-value=0.0034 Score=58.34 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=63.3
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCC--Cc--eeEeec----------CCC-CC-CCcEEEEEcccccch
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDN--GK--QLIYEK----------LPN-DI-SERHVLLLDPVLATG 226 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~--~~--~~~y~~----------lP~-~i-~~~~Vil~Dp~laTG 226 (301)
+++.+--.|.|+...+...+. .+++.++++.+. ++ ...|.. ||. .+ +|.+|+|+||+++||
T Consensus 133 ~Vvtvet~GIplA~~vA~~L~---vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TG 209 (271)
T PRK09213 133 AVMTVETKGIPLAYAVANYLN---VPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAG 209 (271)
T ss_pred EEEEEccccHHHHHHHHHHHC---CCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccC
Confidence 567777889999888877653 445777776542 11 112211 111 12 588999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHH
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 261 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l 261 (301)
+|+.++++.+++.|+. =+-+++++...+|-+++
T Consensus 210 gTi~a~i~Ll~e~Ga~--VvGv~vlVd~~~~~~~l 242 (271)
T PRK09213 210 GTINGMISLLKEFDAE--VVGIGVLVETKEPEERL 242 (271)
T ss_pred HhHHHHHHHHHHCCCE--EEEEEEEEECCCChhhc
Confidence 9999999999999972 23444456666665555
No 90
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00037 Score=59.33 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEE--eCHHHHHHH
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLI--SAPEGIHCV 261 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~v--as~~gl~~l 261 (301)
.|..|+++|+.+|||||+.+|.+.+.+.|+ +=+-++|++ ..-+|=++|
T Consensus 121 ~g~rvvvVDDllATGGTl~AA~~Ll~r~ga--~vvE~~~vieL~~LkGr~kL 170 (183)
T KOG1712|consen 121 PGQRVVVVDDLLATGGTLAAATELLERVGA--EVVECACVIELPELKGREKL 170 (183)
T ss_pred CCCeEEEEechhhcCccHHHHHHHHHHhcc--EEEEEEEEEEccccCCcccc
Confidence 378999999999999999999999999998 445555554 455565555
No 91
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=97.22 E-value=0.0018 Score=65.08 Aligned_cols=79 Identities=13% Similarity=0.264 Sum_probs=54.5
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCC-----c---------eeEeecCCCCCCCcEEEEEcccccchHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNG-----K---------QLIYEKLPNDISERHVLLLDPVLATGNS 228 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~-----~---------~~~y~~lP~~i~~~~Vil~Dp~laTG~t 228 (301)
++||+-.+|.+.+.++.+... .+.. -++.|+..++ + +..+..+...++||+|+|+||++.||.|
T Consensus 315 vVv~VP~sg~~~A~g~A~~lg-ip~~-~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtT 392 (500)
T PRK07349 315 LVIGVPDSGIPAAIGFSQASG-IPYA-EGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTT 392 (500)
T ss_pred EEEEeccccHHHHHHHHHHHC-CCch-hceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHH
Confidence 566777778888888877652 2222 2233332221 1 1233344567789999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 022183 229 ANQAIQLLIEKGVPE 243 (301)
Q Consensus 229 ~~~ai~~L~~~g~~~ 243 (301)
+.++++.|++.|+.+
T Consensus 393 l~~~~~~Lr~aGAke 407 (500)
T PRK07349 393 SRKIVKALRDAGATE 407 (500)
T ss_pred HHHHHHHHHHhCCeE
Confidence 999999999999943
No 92
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=97.09 E-value=0.0022 Score=64.16 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=37.6
Q ss_pred CCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022183 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 207 lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
.+..++|++|+|+||++.||.|+.++++.|++.|+ +.|.+++.
T Consensus 344 ~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga--~~v~~~~~ 386 (484)
T PRK07272 344 VSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGA--KEVHVAIA 386 (484)
T ss_pred cccccCCCEEEEEccccCchHHHHHHHHHHHhcCC--cEEEEEEe
Confidence 45678899999999999999999999999999999 45666665
No 93
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=97.01 E-value=0.0025 Score=63.17 Aligned_cols=41 Identities=17% Similarity=0.400 Sum_probs=35.1
Q ss_pred CCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEE
Q 022183 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249 (301)
Q Consensus 207 lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~ 249 (301)
....++||+|+|+||++.||.|+..+++.|++.|+ +.|.++
T Consensus 332 ~~~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga--~~v~~~ 372 (442)
T TIGR01134 332 IREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGA--KEVHVR 372 (442)
T ss_pred ccccCCCCEEEEEeccccccHHHHHHHHHHHHcCC--cEEEEE
Confidence 34467899999999999999999999999999998 455543
No 94
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=96.99 E-value=0.008 Score=60.08 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEecCC-CCc-eeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcC
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHRDGD-NGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKG 240 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~-~~~-~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g 240 (301)
+++.+--+|.|+..++...+ +.+ .+.+++..+ .+. ...-..+ .+|++|+|+||+++||+|+.++++.|++.|
T Consensus 347 ~I~Gia~gGiPlAt~lA~~l-g~p--~v~vRKe~K~~G~~~~ieG~~---~~G~rVlIVDDViTTGgSi~eaie~l~~aG 420 (477)
T PRK05500 347 RIAGIPYGSLPTATGLALHL-HHP--MIFPRKEVKAHGTRRLIEGNF---HPGETVVVVDDILITGKSVMEGAEKLKSAG 420 (477)
T ss_pred EEEEEccchHHHHHHHHHHh-CCC--EEEEecCcCccCCCceEecCC---CCcCEEEEEEeccccCHHHHHHHHHHHHCC
Confidence 45556678999987777654 222 355544422 121 2221222 268999999999999999999999999999
Q ss_pred CCCccEEEEEEEeCHHH-HHHHHH
Q 022183 241 VPESHIIFLNLISAPEG-IHCVCK 263 (301)
Q Consensus 241 ~~~~~I~~~~~vas~~g-l~~l~~ 263 (301)
.. =+-+++++--.+| -+++.+
T Consensus 421 ~~--V~~v~vlVDR~~g~~~~L~~ 442 (477)
T PRK05500 421 LN--VRDIVVFIDHEQGVKDKLQS 442 (477)
T ss_pred CE--EEEEEEEEECCcchHHHHHh
Confidence 72 2344445544444 455533
No 95
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=96.94 E-value=0.0034 Score=62.73 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=54.0
Q ss_pred eEEEecccchHHHHHHHHhccCCeeeeEEEEe--cCCCC-----------ceeEeecCCCCCCCcEEEEEcccccchHHH
Q 022183 163 CGVSIVRSGESMENALRACCKGIKIGKILIHR--DGDNG-----------KQLIYEKLPNDISERHVLLLDPVLATGNSA 229 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~R--d~~~~-----------~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~ 229 (301)
+++|+=-+|.+.+.++.+..- .+...-++.+ ...+. .+..+.-.+..++||+|+|+||++.||.|+
T Consensus 286 ~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl 364 (471)
T PRK06781 286 VVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTS 364 (471)
T ss_pred EEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccchHH
Confidence 445555577777777766542 1221112221 11111 112333345678899999999999999999
Q ss_pred HHHHHHHHHcCCCCccEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~ 250 (301)
.++++.|++.|+.+-.+.+.|
T Consensus 365 ~~~~~~Lk~aGA~eV~v~i~s 385 (471)
T PRK06781 365 KRIVRMLREAGATEVHVRIAS 385 (471)
T ss_pred HHHHHHHHHcCCcEEEEEECC
Confidence 999999999999543333333
No 96
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=96.94 E-value=0.0037 Score=62.98 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=34.4
Q ss_pred ecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCC
Q 022183 205 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPE 243 (301)
Q Consensus 205 ~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~ 243 (301)
..++..++||+|+|+||.++||.|+.++++.|++.|+.+
T Consensus 359 ~~~~~~~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~ 397 (510)
T PRK07847 359 NPLREVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAE 397 (510)
T ss_pred CccccccCCCEEEEEecccCchHHHHHHHHHHHHcCCCE
Confidence 334666899999999999999999999999999999953
No 97
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=96.93 E-value=0.0032 Score=62.93 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=53.5
Q ss_pred eEEEecccchHHHHHHHHhcc-CCeeeeEEEEecCCCC--c---------eeEeecCCCCCCCcEEEEEcccccchHHHH
Q 022183 163 CGVSIVRSGESMENALRACCK-GIKIGKILIHRDGDNG--K---------QLIYEKLPNDISERHVLLLDPVLATGNSAN 230 (301)
Q Consensus 163 ~~V~IlRaG~~m~~~l~~~~p-~a~~G~i~i~Rd~~~~--~---------~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~ 230 (301)
++||+=-.|.+.+.++.+... ....|.+--.+...|. + +..+......++||+|+|+||++.||.|+.
T Consensus 286 ~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtTl~ 365 (475)
T PRK07631 286 VVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSR 365 (475)
T ss_pred EEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHHHHH
Confidence 445555577777777776652 1112222111111121 1 112333456788999999999999999999
Q ss_pred HHHHHHHHcCCCCccEEEE
Q 022183 231 QAIQLLIEKGVPESHIIFL 249 (301)
Q Consensus 231 ~ai~~L~~~g~~~~~I~~~ 249 (301)
++++.|++.|+. +|.+.
T Consensus 366 ~~~~~L~~aGA~--eV~v~ 382 (475)
T PRK07631 366 RIVTMLREAGAT--EVHVR 382 (475)
T ss_pred HHHHHHHHcCCC--EEEEE
Confidence 999999999995 45443
No 98
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.93 E-value=0.0024 Score=56.47 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=44.9
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..|||++|.++|+.|-..| +|.+.+++...+.....+.+ . +..||+||+|.++
T Consensus 126 ~D~vi~V~a~~e~ri~Rl~~R----~g~s~e~~~~ri~~Q~~~~~-k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 126 MDLVVVVDVDVEERVRRLVEK----RGLDEDDARRRIAAQIPDDV-R-----LKAADIVVDNNGT 180 (200)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHhcCCHHH-H-----HHhCCEEEECcCC
Confidence 589999999999999888888 58999999999887555433 2 4799999988554
No 99
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.81 E-value=0.0026 Score=56.22 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=45.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..|||++|.++|+.|.+.|| |.+.+++...+.+ .. .+++.++.||+||.|+++
T Consensus 122 ~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a~~ri~~-Q~-----~~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 122 CDATVTVDSDPEESILRTISRD----GMKKEDVLARIAS-QL-----PITEKLKRADYIVRNDGN 176 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cC-----CHHHHHHhCCEEEECCCC
Confidence 6899999999999999999995 7788888888766 32 356678999999998654
No 100
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.79 E-value=0.0031 Score=55.61 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=43.5
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGG 64 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~ 64 (301)
+|..+||++|.++|+.|.+.|| |.+.++....... ..| +++.+..||+||+|++
T Consensus 126 ~D~ii~V~a~~e~r~~Rl~~R~----g~s~e~~~~ri~~-Q~~-----~~~k~~~aD~vI~N~g 179 (195)
T PRK14730 126 CSEIWVVDCSPEQQLQRLIKRD----GLTEEEAEARINA-QWP-----LEEKVKLADVVLDNSG 179 (195)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCC-----HHHHHhhCCEEEECCC
Confidence 6899999999999999999997 7788887777654 223 3466789999998744
No 101
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.57 E-value=0.0068 Score=61.14 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=57.7
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCC---CHHHHHHHHHhhccchhHhhccccccc-ccEeecCCCCCc-hhHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGR---DVDSVLEQYAKFVKPAFDDFVLPSKKY-ADVIIPRGGDNH-VAIDLIVQH 76 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~---~~~~v~~~~~~~~~p~~~~~i~P~~~~-ADiii~~~~~~~-~~~~~i~~~ 76 (301)
|+|||++++.++|..||..+.. +||. +.+++.+.+...-+-+..+++.|.... ++++|+.++.+. ..++.|++.
T Consensus 422 dlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~ 500 (512)
T PRK13477 422 ELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDL 500 (512)
T ss_pred CEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHH
Confidence 7999999999999999987743 5664 578999999887778888999998776 679998765443 223444444
Q ss_pred Hh
Q 022183 77 IH 78 (301)
Q Consensus 77 i~ 78 (301)
++
T Consensus 501 i~ 502 (512)
T PRK13477 501 YR 502 (512)
T ss_pred HH
Confidence 44
No 102
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=96.54 E-value=0.1 Score=46.01 Aligned_cols=109 Identities=14% Similarity=0.214 Sum_probs=67.1
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEec------------CC-CC--ceeEeecCCCCCC-CcEEEEEccccc
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRD------------GD-NG--KQLIYEKLPNDIS-ERHVLLLDPVLA 224 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd------------~~-~~--~~~~y~~lP~~i~-~~~Vil~Dp~la 224 (301)
+..+|+.---+-++-.++-+.+..+. -++.=.|. |+ +. ....|..-|+.+. .+.++|+||=+.
T Consensus 54 ~~lvIGfAETATgLG~~V~~~~~~~~-~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly~~~~~~l~~~~~lVLVDDEiS 132 (191)
T PF15609_consen 54 PVLVIGFAETATGLGHGVFDALGAAC-LYLHTTREPVPGVPPLLEFEEEHSHATDHLLYPPDPDLLRNARTLVLVDDEIS 132 (191)
T ss_pred CeEEEEEhHHHHHHHHHHHHHhhhcc-ceeeeccccCCCCccceeeeccccccccceecCCChHHhcCCCCEEEEecCcc
Confidence 56666666655556555555555443 11222222 11 11 1223333333344 479999999999
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeC--H---HHHHHHHHhCCCcEEEE
Q 022183 225 TGNSANQAIQLLIEKGVPESHIIFLNLISA--P---EGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 225 TG~t~~~ai~~L~~~g~~~~~I~~~~~vas--~---~gl~~l~~~~p~v~i~t 272 (301)
||+|++..++.|++.-+ .+++++++++-- + +-.+.+.+..+ ++|-+
T Consensus 133 TG~T~lnli~al~~~~p-~~~yvvasL~d~~~~~~~~~~~~~~~~lg-i~i~~ 183 (191)
T PF15609_consen 133 TGNTFLNLIRALHAKYP-RKRYVVASLLDWRSEEDRARFEALAEELG-IPIDV 183 (191)
T ss_pred chHHHHHHHHHHHHhCC-CceEEEEEEeeCCCHHHHHHHHHHHHHcC-CcEEE
Confidence 99999999999999865 689999999844 2 23456666663 44433
No 103
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=96.49 E-value=0.017 Score=57.88 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=36.0
Q ss_pred cCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022183 206 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 206 ~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
.+...++|++|+|+||.+.||.|+.++++.|++.|+.+-.+.+.|
T Consensus 349 ~~~~~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 349 PIREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred cccccccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 344567899999999999999999999999999999543333333
No 104
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.41 E-value=0.0097 Score=53.64 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=53.4
Q ss_pred CeEEEEeCCchhHHHHHhhhcccc-CCCCHHHHHHHHHhhccchhHhhccccccccc-EeecCCCCC-chhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDN-HVAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~e-rg~~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~-~~~~~~i~~~i~ 78 (301)
+++||+++|.+.|..||..+.... ++-+.+++.+...+.=+-....|+.|.+.++| ++|+.+.-+ ...++.|.+.++
T Consensus 141 ~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~ 220 (225)
T PRK00023 141 ELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVE 220 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 689999999999988877774332 24566666666555433344678899998887 888875533 234566666665
Q ss_pred hh
Q 022183 79 TK 80 (301)
Q Consensus 79 ~~ 80 (301)
..
T Consensus 221 ~~ 222 (225)
T PRK00023 221 EK 222 (225)
T ss_pred HH
Confidence 43
No 105
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.05 E-value=0.014 Score=50.61 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=44.8
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..+||++|.++|+.|.+.|| |.+.+++.+.+.+. .|. +..+..||++|+|.+.
T Consensus 124 ~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~~~r~~~q-~~~-----~~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 124 CDRVIVVDVSPQLQLERLMQRD----NLTEEEVQKRLASQ-MDI-----EERLARADDVIDNSAT 178 (188)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CCH-----HHHHHhCCEEEECCCC
Confidence 5889999999999999999998 88889988887763 333 2447889999987543
No 106
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=95.73 E-value=0.013 Score=51.85 Aligned_cols=60 Identities=17% Similarity=0.342 Sum_probs=51.8
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
|++|=|-.=-.+.-+.++.||..+||++-|.|++...+ ..|+|-+||.||-...||=+.+
T Consensus 148 DlliGvVPivNLEWIQK~~RDt~~RGhSrEAVmDsivR-sMdDYinyItPQFSrThINFQR 207 (289)
T COG3954 148 DLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVR-SMDDYINYITPQFSRTHINFQR 207 (289)
T ss_pred ceeeeeeeEeeHHHHHHHHhcccccCccHHHHHHHHHH-hhhhHHhhcCccccccccceee
Confidence 56666666667788889999999999999999999987 8899999999999999886544
No 107
>PRK04182 cytidylate kinase; Provisional
Probab=95.65 E-value=0.057 Score=45.74 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=45.3
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhh---ccchhHhhc---ccccccccEeecCCCCCc-hhHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKF---VKPAFDDFV---LPSKKYADVIIPRGGDNH-VAIDLIV 74 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~---~~p~~~~~i---~P~~~~ADiii~~~~~~~-~~~~~i~ 74 (301)
+++||+++|.++++.|...|+ +++.+....+..+. .+.-|..|. .|..+.||++|+.+.... ..++.|.
T Consensus 93 ~~~V~l~a~~e~~~~Rl~~r~----~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~ 168 (180)
T PRK04182 93 DLKIWLKAPLEVRAERIAERE----GISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIIL 168 (180)
T ss_pred CEEEEEECCHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHH
Confidence 689999999999988887775 45666554432221 111222222 233468999999755432 3445555
Q ss_pred HHHhhh
Q 022183 75 QHIHTK 80 (301)
Q Consensus 75 ~~i~~~ 80 (301)
+.++..
T Consensus 169 ~~~~~~ 174 (180)
T PRK04182 169 TAIDKL 174 (180)
T ss_pred HHHHHH
Confidence 555543
No 108
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.54 E-value=0.045 Score=46.03 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=46.5
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccc------cccccEeecCCCCCchhHHHHH
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS------KKYADVIIPRGGDNHVAIDLIV 74 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~------~~~ADiii~~~~~~~~~~~~i~ 74 (301)
.|++|||++|.++|+.|...|+ |.+.+....++.+.-+.....|...+ ..+-|++|+.+.-....++.|.
T Consensus 92 ~d~~v~v~a~~~~r~~R~~~R~----~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~~~~i~ 167 (171)
T TIGR02173 92 ADVKIWLKAPLEVRARRIAKRE----GKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNNVDIIL 167 (171)
T ss_pred cCEEEEEECCHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHH
Confidence 3789999999999999988875 67777777766554333333333332 2455899988554432255554
Q ss_pred HH
Q 022183 75 QH 76 (301)
Q Consensus 75 ~~ 76 (301)
++
T Consensus 168 ~~ 169 (171)
T TIGR02173 168 DA 169 (171)
T ss_pred HH
Confidence 44
No 109
>PRK01184 hypothetical protein; Provisional
Probab=95.46 E-value=0.052 Score=46.66 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=41.4
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
..|||++|.++++.|-..|+-.+.+.+.+++.++..+...+. +++..+.||++|+|++.
T Consensus 106 ~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~----~~~~~~~ad~vI~N~~~ 164 (184)
T PRK01184 106 ILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWG----IGEVIALADYMIVNDST 164 (184)
T ss_pred EEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccC----HHHHHHhcCEEEeCCCC
Confidence 689999999999999988875444556677776655432222 23344789999997554
No 110
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=95.37 E-value=0.055 Score=52.92 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=68.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+|..|||++|.++|+.|=.. .||.+.+.....+.+.. + .++.++.||++|+|+++.......+.+.++..
T Consensus 124 ~D~iI~V~ap~e~ri~Rl~~----rRg~s~~~a~~ri~~Q~-~-----~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 124 FHLVVVVDADVEVRVRRLVE----QRGMAEADARARIAAQA-S-----DEQRRAVADVWLDNSGTPDELVEAVRALWADR 193 (395)
T ss_pred CCEEEEEECCHHHHHHHHHh----cCCCCHHHHHHHHHhcC-C-----hHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 58999999999999977443 47999998888776632 2 23448899999998666444444444444443
Q ss_pred cc----c-c-ccccCCCceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHH
Q 022183 81 LG----Q-H-DLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVV 131 (301)
Q Consensus 81 l~----~-~-~l~~~~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~ 131 (301)
+. + + +-+.....|.+.++.| .| +..|..-..+|...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~v~v~~ydp---~W----------~~~f~~e~~~l~~~l~ 237 (395)
T PRK03333 194 LLPFAHNLRARRRAARAPPRLVPADP---SW----------PAQAQRIVARLKTAAG 237 (395)
T ss_pred HhhHHHHHhcCCCCCCCCceEeCCCC---Cc----------HHHHHHHHHHHHHhcC
Confidence 32 1 1 1112344588887765 23 2457776666665554
No 111
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.0086 Score=57.60 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCC---CceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCcc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDN---GKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESH 245 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~---~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~ 245 (301)
.+|+|+.++|.+ +--+|.-.++-+.+- +....+..++..++||.|+|+||-|--|.|....++.|++.|+.|-.
T Consensus 312 ~sG~py~e~l~r---nrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh 388 (474)
T KOG0572|consen 312 KSGLPYQEVLIR---NRYVGRTFIEPNQRIRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVH 388 (474)
T ss_pred HhCCchhhhhhh---cccccceecCccHHHHHhhhhhhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEE
Confidence 467778777643 333443333322111 12335778899999999999999999999999999999999996655
Q ss_pred EEEEE
Q 022183 246 IIFLN 250 (301)
Q Consensus 246 I~~~~ 250 (301)
+.+++
T Consensus 389 ~riAs 393 (474)
T KOG0572|consen 389 IRIAS 393 (474)
T ss_pred EEecC
Confidence 55554
No 112
>PLN02422 dephospho-CoA kinase
Probab=94.97 E-value=0.087 Score=47.90 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=42.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..|||++|.++|+.|=+.|| |.+.++....... ..|..+. ++.||+||+|+++
T Consensus 126 ~D~vI~V~a~~e~ri~RL~~R~----g~s~eea~~Ri~~-Q~~~eek-----~~~AD~VI~N~gs 180 (232)
T PLN02422 126 TKPVVVVWVDPETQLERLMARD----GLSEEQARNRINA-QMPLDWK-----RSKADIVIDNSGS 180 (232)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCChhHH-----HhhCCEEEECCCC
Confidence 5899999999999999999996 7788887777543 4443222 6889999998653
No 113
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=94.64 E-value=0.097 Score=47.95 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=42.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
+|..|||++|.++++.|-+.| +|.+.+++.+...+ ..|..+ .++.||+||.|+
T Consensus 137 ~D~iv~V~a~~e~ri~RL~~R----~g~s~eea~~Ri~~-Q~~~~e-----k~~~aD~VI~N~ 189 (244)
T PTZ00451 137 VSASVVVSCSEERQIERLRKR----NGFSKEEALQRIGS-QMPLEE-----KRRLADYIIEND 189 (244)
T ss_pred CCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHh-CCCHHH-----HHHhCCEEEECC
Confidence 589999999999999998777 47888999888876 334222 468899999986
No 114
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=94.58 E-value=0.12 Score=45.86 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=40.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..|||++|.++++.|-+.|| +.+.+.+.+.... ..+ .+.++ +.||++|+|.++
T Consensus 134 ~d~ii~V~a~~e~~~~Rl~~R~----~~s~e~~~~Ri~~-q~~-~~~~~----~~ad~vI~N~g~ 188 (208)
T PRK14731 134 LDFIVVVAADTELRLERAVQRG----MGSREEIRRRIAA-QWP-QEKLI----ERADYVIYNNGT 188 (208)
T ss_pred CCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-cCC-hHHHH----HhCCEEEECCCC
Confidence 5899999999999999999996 3366777666554 333 23333 469999987554
No 115
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=94.39 E-value=0.18 Score=44.95 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=41.9
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGG 64 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~ 64 (301)
+|..|+|++|.++|+.|-+.|| |.+.++..+.... ..|.-+ -++.||+||+|++
T Consensus 129 ~D~vi~V~a~~e~ri~Rl~~Rd----~~s~~~a~~ri~~-Q~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 129 LKKVIVIKADLETRIRRLMERD----GKNRQQAVAFINL-QISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred CCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHh-CCCHHH-----HHHhCCEEEECcC
Confidence 5889999999999999999886 6677777777554 444332 3479999999866
No 116
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.20 E-value=0.13 Score=45.14 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=40.8
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
+|..+||++|.++++.|-..|| |.+.+.+...... ..|.. ..+..||+||+|.++
T Consensus 125 ~D~vi~V~a~~e~~~~Rl~~R~----~~s~e~~~~ri~~-Q~~~~-----~~~~~ad~vI~N~g~ 179 (194)
T PRK00081 125 VDRVLVVDAPPETQLERLMARD----GLSEEEAEAIIAS-QMPRE-----EKLARADDVIDNNGD 179 (194)
T ss_pred CCeEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHH-hCCHH-----HHHHhCCEEEECCCC
Confidence 5899999999999999988884 6777777666554 33322 235789999987543
No 117
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=94.16 E-value=0.071 Score=47.61 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=50.2
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHH-HHHHHHHhhccchhHhhccc-ccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD-SVLEQYAKFVKPAFDDFVLP-SKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~-~v~~~~~~~~~p~~~~~i~P-~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
|+.||+|+|.+.++.|--.| |++-+ .+-..|++.++-.|.++..| ....+++++-++ +|.-.++.|++.|..
T Consensus 144 d~~i~l~~~~~~~~~Ri~~R-----~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~~ 217 (219)
T cd02030 144 HLVIYLDVPVPEVQKRIKKR-----GDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIEY 217 (219)
T ss_pred CEEEEEeCCHHHHHHHHHHc-----CCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHHc
Confidence 89999999999988885444 44322 34456777788899888777 556788887653 344556667666543
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.10 E-value=0.13 Score=54.16 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=59.2
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhccccccccc-EeecCCCCCc-hhHHHHHHHHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNH-VAIDLIVQHIHT 79 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~-~~~~~i~~~i~~ 79 (301)
|+|||++++.++|-.||..++.. -+.++++++..+.=+-+. +++.|.+...| ++|+++.-+. ..++.+.+.++.
T Consensus 156 ~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 231 (712)
T PRK09518 156 EVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVED 231 (712)
T ss_pred CeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999865 899999999888777788 99999876555 5566544432 345666666665
Q ss_pred hcc
Q 022183 80 KLG 82 (301)
Q Consensus 80 ~l~ 82 (301)
.+.
T Consensus 232 ~~~ 234 (712)
T PRK09518 232 AIE 234 (712)
T ss_pred hhh
Confidence 554
No 119
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.88 E-value=0.22 Score=44.72 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=53.8
Q ss_pred CeEEEEeCCchhHHHHHhhhcccc-CCCCHHHHHHHHHhhccchhHhhcccccccccEe-ecCCCCCchhHHHHHHHHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVE-RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVI-IPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~e-rg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADii-i~~~~~~~~~~~~i~~~i~~ 79 (301)
|++||+++|.+.|..||..|+... ...+.+++.+++...=+-+..++..|.+...|.+ |+.+. ..++.+++.|.+
T Consensus 139 ~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~---l~ieevv~~I~~ 215 (217)
T TIGR00017 139 EVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSN---LSIDEVVEKILE 215 (217)
T ss_pred CEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCC---CCHHHHHHHHHH
Confidence 689999999999999999997642 2567899999988754556667778877766555 55432 335566665543
No 120
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=93.69 E-value=0.15 Score=53.10 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=55.1
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCC--CCHHHHHHHHHhhccchhHhhcccccccccEe-ecCCCCCchhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERG--RDVDSVLEQYAKFVKPAFDDFVLPSKKYADVI-IPRGGDNHVAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg--~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADii-i~~~~~~~~~~~~i~~~i~ 78 (301)
|+|||++++.++|-.||...-. ++| -+.++++++..+.=+-+..+++.|.+.-.|-+ |+++.- .++.+++.|.
T Consensus 575 ~~kifl~a~~~~Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~---~~~~v~~~i~ 650 (661)
T PRK11860 575 ALKVFLTASAEARAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDL---TIEQAVAQVL 650 (661)
T ss_pred CeEEEEECChhHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCC---CHHHHHHHHH
Confidence 7999999999999999987644 345 48999999988877788889999999866544 554332 2444444444
Q ss_pred hh
Q 022183 79 TK 80 (301)
Q Consensus 79 ~~ 80 (301)
+.
T Consensus 651 ~~ 652 (661)
T PRK11860 651 DW 652 (661)
T ss_pred HH
Confidence 43
No 121
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.24 E-value=0.36 Score=41.42 Aligned_cols=56 Identities=30% Similarity=0.512 Sum_probs=39.1
Q ss_pred CeEEEEeCCchhHHHHHhhhccccC----CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN 66 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~er----g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~ 66 (301)
+..||+++|.+.++.|= .++- .| +-+.++.+.++...++|.|+++ ||++|+..+.+
T Consensus 98 ~~vv~L~~~~e~~~~Ri-~~~~-~rP~~~~~~~~~~~~~l~~~R~~~Y~~~-------Ad~~idt~~~s 157 (172)
T PRK05057 98 GVVVYLETTIEKQLART-QRDK-KRPLLQVDDPREVLEALANERNPLYEEI-------ADVTIRTDDQS 157 (172)
T ss_pred CEEEEEeCCHHHHHHHH-hCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHhh-------CCEEEECCCCC
Confidence 57899999999988774 3332 22 3344566777777788888654 99999865444
No 122
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=92.45 E-value=0.16 Score=50.18 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=40.8
Q ss_pred eeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022183 201 QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 201 ~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
++....+...++||.|+|+||-|-.|.|....++.|++.|+.|-++.+++
T Consensus 336 r~KLnpvr~~v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 336 RLKLNPVREVVKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hhhcCchHHHhCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 34456677788999999999999999999999999999999654444443
No 123
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=92.35 E-value=0.056 Score=45.29 Aligned_cols=58 Identities=19% Similarity=0.429 Sum_probs=41.6
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHH-HHHHHHHhhcc-chhHhhcccccccccEeecCCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD-SVLEQYAKFVK-PAFDDFVLPSKKYADVIIPRGG 64 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~-~v~~~~~~~~~-p~~~~~i~P~~~~ADiii~~~~ 64 (301)
|+.||+++|.++++.| +..|||+.| .+-..|++... -.|+.|.......-=++|++..
T Consensus 69 dl~IYL~~~~e~~~~R-----I~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~ 128 (146)
T PF01712_consen 69 DLIIYLDASPETCLER-----IKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADN 128 (146)
T ss_dssp SEEEEEE--HHHHHHH-----HHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECE
T ss_pred CeEEEEeCCHHHHHHH-----HHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCc
Confidence 8999999999999776 344788888 45566887787 6899998777665566777644
No 124
>PRK13946 shikimate kinase; Provisional
Probab=91.75 E-value=0.62 Score=40.28 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=44.2
Q ss_pred CeEEEEeCCchhHHHHHhhhcccc--CCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVE--RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~e--rg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (301)
++.||+++|.++++.|-..|+... .+.+..+.+++..+.++|.| ..+|++|+...-.. .+++.|++.|+
T Consensus 104 ~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~ 175 (184)
T PRK13946 104 GISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVY--------AEADLTVASRDVPKEVMADEVIEALA 175 (184)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 478999999999887755553221 12344555565555466543 34799996544332 45566666666
Q ss_pred hhcc
Q 022183 79 TKLG 82 (301)
Q Consensus 79 ~~l~ 82 (301)
..+.
T Consensus 176 ~~~~ 179 (184)
T PRK13946 176 AYLE 179 (184)
T ss_pred Hhhc
Confidence 5543
No 125
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.54 E-value=0.5 Score=42.02 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=45.7
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCch
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHV 68 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~ 68 (301)
+|..|.|++|.++|+.|-++|| |-|.+.+...... .+|..++ ...||+|+.++.....
T Consensus 124 ~d~Vi~V~a~~e~r~eRl~~R~----~~~~e~~~~~~~~-Q~~~~ek-----~~~ad~vi~n~~~i~~ 181 (201)
T COG0237 124 FDKVIVVYAPPEIRLERLMKRD----GLDEEDAEARLAS-QRDLEEK-----LALADVVIDNDGSIEN 181 (201)
T ss_pred CCEEEEEECCHHHHHHHHHhcC----CCCHHHHHHHHHh-cCCHHHH-----HhhcCChhhcCCCHHH
Confidence 4788999999999999999997 5666666666554 7777777 4899999988655443
No 126
>PRK13949 shikimate kinase; Provisional
Probab=91.45 E-value=0.32 Score=41.71 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=37.2
Q ss_pred CeEEEEeCCchhHHHHHhhhccccC----CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~er----g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (301)
++.||+++|.++ +.+|+.++-..| +.+.++..+. .+-.|+++.. .-+.||++|+..+.+ .+.++++|
T Consensus 95 ~~vi~L~~~~~~-~~~Ri~~~~~~RP~~~~~~~~~~~~~----i~~l~~~R~~-~Y~~ad~~id~~~~~---~~e~~~~I 165 (169)
T PRK13949 95 GTTVYLKVSPEV-LFVRLRLAKQQRPLLKGKSDEELLDF----IIEALEKRAP-FYRQAKIIFNADKLE---DESQIEQL 165 (169)
T ss_pred CeEEEEECCHHH-HHHHHhcCCCCCCCCCCCChHHHHHH----HHHHHHHHHH-HHHhCCEEEECCCCC---HHHHHHHH
Confidence 678999999998 667776543222 2222332222 2223444432 323489999875543 23444444
Q ss_pred hh
Q 022183 78 HT 79 (301)
Q Consensus 78 ~~ 79 (301)
.+
T Consensus 166 ~~ 167 (169)
T PRK13949 166 VQ 167 (169)
T ss_pred HH
Confidence 43
No 127
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.23 E-value=0.83 Score=38.16 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=40.3
Q ss_pred CeEEEEeCCchhHHHHHhhhcccc--CCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVE--RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~e--rg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (301)
.+.||+++|.+.+..|-..|.... +..+..+.+.++.+...+.| ++++|++|+.++.+. ...+.|.++++
T Consensus 98 ~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~dl~idt~~~~~~e~~~~I~~~v~ 170 (175)
T PRK00131 98 GTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLY-------EEVADITVETDGRSPEEVVNEILEKLE 170 (175)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH-------HhhcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 367999999999644443333211 11223333433333344433 455899999755543 45567777776
Q ss_pred hh
Q 022183 79 TK 80 (301)
Q Consensus 79 ~~ 80 (301)
..
T Consensus 171 ~~ 172 (175)
T PRK00131 171 AA 172 (175)
T ss_pred hh
Confidence 43
No 128
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=90.85 E-value=1 Score=39.12 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=47.9
Q ss_pred eEEEEeCCchhHHHHHhhhcccc---CCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVE---RGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~e---rg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
..||+++|.++- .+|+.+|..- ...+..+.+.+..+.+.|-|++. ||++++....+....+.+++.+..
T Consensus 97 ~vv~L~~~~e~l-~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-------a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 97 IVVYLDAPFETL-YERLQRDRKRPLLQTEDPREELEELLEERQPLYREV-------ADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred eEEEEeCCHHHH-HHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh-------CcEEecCCCCcHHHHHHHHHHHHH
Confidence 579999999874 5566655533 35566566666666699988876 999999877775555555555543
No 129
>PRK08118 topology modulation protein; Reviewed
Probab=90.68 E-value=0.28 Score=41.97 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHH---------------HHHHHHHhhccchhHhhcccccccccEe
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVD---------------SVLEQYAKFVKPAFDDFVLPSKKYADVI 59 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~---------------~v~~~~~~~~~p~~~~~i~P~~~~ADii 59 (301)
.|..||+|+|.++|+.|-+.|-...+|.+.+ ..+.+|.+..+|.|.+..+.......+|
T Consensus 79 ~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~~~~~~~~~~~~~~~~~ 152 (167)
T PRK08118 79 ADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRPSILKRLNQLSEEKDIV 152 (167)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhHHHHHHHHhcCCCCeEE
Confidence 4889999999999999999997765665332 2333444445555555555444334443
No 130
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=90.63 E-value=0.28 Score=42.42 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=40.5
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHH-HHHHHhhccchhHhhccc-ccccccEe-ecC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSV-LEQYAKFVKPAFDDFVLP-SKKYADVI-IPR 62 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v-~~~~~~~~~p~~~~~i~P-~~~~ADii-i~~ 62 (301)
.|+.||+++|.++++.|-- +||++.+.. -.+|.+.++..|+.+..+ .+..+.++ |++
T Consensus 125 pd~~i~l~~~~~~~~~Ri~-----~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~ 184 (193)
T cd01673 125 PDLVIYLDASPETCLKRIK-----KRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDA 184 (193)
T ss_pred CCEEEEEeCCHHHHHHHHH-----hcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEC
Confidence 3789999999999977632 467765533 246777899999999876 34446665 443
No 131
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=89.53 E-value=0.86 Score=38.81 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=42.8
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
|+.||+++|.++++.|...|+-.+.. +....+|.+.++..|..+..... .-.++|++... ++.+.+.|.+
T Consensus 127 ~~~i~l~~~~~~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~y~~~~~~~~-~~~~~id~~~~----~e~i~~~i~~ 196 (200)
T cd01672 127 DLTILLDIDPEVGLARIEARGRDDRD---EQEGLEFHERVREGYLELAAQEP-ERIIVIDASQP----LEEVLAEILK 196 (200)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcchh---hhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCC----HHHHHHHHHH
Confidence 78999999999999998877543221 13334566667777877765431 22366665332 3444444443
No 132
>PRK13974 thymidylate kinase; Provisional
Probab=89.15 E-value=0.98 Score=40.02 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=34.2
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhc
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFV 49 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i 49 (301)
|+.||+|+|.++.+.|...|+ ....+.-...|.+.++|.|..|.
T Consensus 136 d~~i~ld~~~~~~~~R~~~R~----dD~~e~~~~~y~~~v~~~y~~y~ 179 (212)
T PRK13974 136 DLTFFLEISVEESIRRRKNRK----PDRIEAEGIEFLERVAEGFALIA 179 (212)
T ss_pred CEEEEEeCCHHHHHHHHHhcc----cCchhhhhHHHHHHHHHHHHHHH
Confidence 789999999999999976652 12255556678888999999884
No 133
>PRK00625 shikimate kinase; Provisional
Probab=88.99 E-value=1.7 Score=37.61 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=37.2
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
...||+++|.++...|-..|+..++..+.+.+.+-|.+ +.|.|++ .||++|+..
T Consensus 97 ~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~-R~~~Y~~-------~ad~~i~~~ 150 (173)
T PRK00625 97 GLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ-RIDRMRS-------IADYIFSLD 150 (173)
T ss_pred CEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH-HHHHHHH-------HCCEEEeCC
Confidence 35799999999888776677766544445555555544 7777665 689988653
No 134
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=88.93 E-value=0.89 Score=38.93 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=48.1
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCC--CCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERG--RDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg--~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (301)
|+|||++++.++|-.||..--. +.| -++++++++....=+-+..+=+.|.+.-.|-++=.+++- .++.+++.|
T Consensus 81 ~~KifLtAs~e~RA~RR~~e~~-~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~l--ti~evv~~i 155 (157)
T PF02224_consen 81 DLKIFLTASPEVRARRRYKELQ-EKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNL--TIEEVVEKI 155 (157)
T ss_dssp SEEEEEE--HHHHHHHHHHHHH-HTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS---HHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCC--CHHHHHHHH
Confidence 7999999999999999976543 444 478999999887666677777899998888765443333 355555554
No 135
>PRK00698 tmk thymidylate kinase; Validated
Probab=88.82 E-value=1.2 Score=38.47 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=41.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
|+.||+++|.++++.|-..|... ...+.--..|.+.++..|..+.+... ...++|+++.+.....+.|.+.|.+.
T Consensus 129 d~~i~l~~~~~~~~~Rl~~R~~~---~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 129 DLTLYLDVPPEVGLARIRARGEL---DRIEQEGLDFFERVREGYLELAEKEP-ERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCc---chhhhhhHHHHHHHHHHHHHHHHhCC-CeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 78999999999998887777521 11111122344445555665543322 34577876544333334454544433
No 136
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=88.53 E-value=1.4 Score=39.86 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=56.8
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccc----cccEeecCCCCCchhHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKK----YADVIIPRGGDNHVAIDLIVQHIH 78 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~----~ADiii~~~~~~~~~~~~i~~~i~ 78 (301)
+.||+++|.++++.|...|+- ..+ ++++.+ .+..|-+|... .++++|+...+. .++.+.+.|.
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~~---~~~-~~~i~~-------l~~r~e~p~~~~~wd~~~~~vd~~~~~--~~~ei~~~i~ 164 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERGE---KIP-NEVIKD-------MYEKFDEPGTKYSWDLPDLTIDTTKKI--DYNEILEEIL 164 (249)
T ss_pred EEEEecCCHHHHHHHHHhCCC---CCC-HHHHHH-------HHHhhCCCCCCCCccCceEEecCCCCC--CHHHHHHHHH
Confidence 578999999999988776642 222 333322 45556566543 499999874432 2344444444
Q ss_pred hhccccccccCCCceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCC
Q 022183 79 TKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH 137 (301)
Q Consensus 79 ~~l~~~~l~~~~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~ 137 (301)
..+.. .+ . |. .-|. ++-++...|.+-+|+..+-++-+.++.
T Consensus 165 ~~~~~-~~---~--------~~----~~~~--~~~~~~~~~l~~ld~~~~~~i~~~~~~ 205 (249)
T TIGR03574 165 EISEN-KL---K--------IE----KPKK--PKRRTDENILNKIDKRTRQIVGELIKT 205 (249)
T ss_pred HHhhc-cC---C--------hh----hhhh--hcccccccHHHHHHHHHHHHHHHHHHh
Confidence 33211 00 0 11 1111 233344557777777777666666654
No 137
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.51 E-value=1.7 Score=37.63 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=48.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccc------cccccEeecCCCCCchhHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS------KKYADVIIPRGGDNHVAID 71 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~------~~~ADiii~~~~~~~~~~~ 71 (301)
|+|||+++|..+|..|=..|+ |-++++++.+-...=+-...+|-+-+ -...|+||+.+.=+..++-
T Consensus 92 dlkI~L~Apl~vRa~Ria~RE----gi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~ 163 (179)
T COG1102 92 DLKIWLKAPLEVRAERIAKRE----GIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVF 163 (179)
T ss_pred ceEEEEeCcHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHH
Confidence 899999999999999999987 78888888876654444555554322 3568999987665554443
No 138
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.44 E-value=1.5 Score=39.58 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=57.7
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCC--HHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRD--VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHT 79 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~--~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~ 79 (301)
++|||+++..++|-.||..--. ++|-+ .++++++....=.-+..+=+.|.+.-.|-++=.+++- .++.++++|..
T Consensus 139 ~lKiFLtAS~e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~m--sieeVv~~il~ 215 (222)
T COG0283 139 ELKIFLTASPEERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSL--SIEEVVEKILE 215 (222)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCC--cHHHHHHHHHH
Confidence 6899999999999999988754 45633 6999999888777788888999999999776544443 35555555554
Q ss_pred h
Q 022183 80 K 80 (301)
Q Consensus 80 ~ 80 (301)
+
T Consensus 216 ~ 216 (222)
T COG0283 216 L 216 (222)
T ss_pred H
Confidence 4
No 139
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=88.14 E-value=1.6 Score=36.74 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=40.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccc-----cCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTV-----ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQH 76 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~-----erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~ 76 (301)
++.||+++|.++++.|-..|.-. -.|.+..+-+.+..+.+++.|.. .|+++|+... .++.+.+.
T Consensus 95 ~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~-------~a~~~Id~~~----~~e~v~~~ 163 (171)
T PRK03731 95 GIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYRE-------VAHHIIDATQ----PPSQVVSE 163 (171)
T ss_pred CEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHH-------hCCEEEcCCC----CHHHHHHH
Confidence 57899999999998775554211 12444433333334447776665 4579998642 24445555
Q ss_pred Hhhhc
Q 022183 77 IHTKL 81 (301)
Q Consensus 77 i~~~l 81 (301)
|.+.+
T Consensus 164 i~~~l 168 (171)
T PRK03731 164 ILSAL 168 (171)
T ss_pred HHHHH
Confidence 54444
No 140
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=87.72 E-value=0.86 Score=41.63 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE--EEeCHHHHHHHHHhCC-CcEEEEEeecCCC
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN--LISAPEGIHCVCKRFP-SLKIVTSEIDVAL 279 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~--~vas~~gl~~l~~~~p-~v~i~t~~iD~~l 279 (301)
|+.|+..|++|+++..-.|..+|.+.||+.|+ =+|++++ -+-|.++-..+. +-| +=.++|-.+..++
T Consensus 244 dvggriaimvddiiddvqsfvaaae~lkerga--ykiyv~athgllssdapr~le-es~idevvvtntvphev 313 (354)
T KOG1503|consen 244 DVGGRIAIMVDDIIDDVQSFVAAAEVLKERGA--YKIYVMATHGLLSSDAPRLLE-ESPIDEVVVTNTVPHEV 313 (354)
T ss_pred ccCceEEEEehhhHHhHHHHHHHHHHHHhcCc--eEEEEEeecccccccchhhhh-cCCCceEEEecCCcHHH
Confidence 55689999999999999999999999999999 5787777 344555555453 334 2235565554443
No 141
>PRK13947 shikimate kinase; Provisional
Probab=87.55 E-value=2.4 Score=35.61 Aligned_cols=66 Identities=23% Similarity=0.346 Sum_probs=36.9
Q ss_pred CeEEEEeCCchhHHHHHhhhccc---cCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~---erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~ 78 (301)
++.||+++|.+++..|--.|... ..+...+.+.+.|.. ++|.|+ .||++|+.++.. .+.+.+.|.
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~-r~~~y~--------~ad~~Idt~~~~---~~~i~~~I~ 162 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE-REPFYD--------FADYTIDTGDMT---IDEVAEEII 162 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH-HHHHHH--------hcCEEEECCCCC---HHHHHHHHH
Confidence 46899999999877664333221 122233455555444 555443 389999864433 334444444
Q ss_pred h
Q 022183 79 T 79 (301)
Q Consensus 79 ~ 79 (301)
+
T Consensus 163 ~ 163 (171)
T PRK13947 163 K 163 (171)
T ss_pred H
Confidence 3
No 142
>PRK07261 topology modulation protein; Provisional
Probab=87.26 E-value=0.21 Score=42.91 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHH
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQ 36 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~ 36 (301)
.|..||+|.|..+|+.|.+.|+...||++.+.+-.+
T Consensus 79 ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g 114 (171)
T PRK07261 79 ADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAEN 114 (171)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCC
Confidence 478999999999999999999999999877665544
No 143
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.09 E-value=1.7 Score=36.78 Aligned_cols=65 Identities=25% Similarity=0.388 Sum_probs=42.4
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhhc
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKL 81 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l 81 (301)
..||+.++.+..+.+|+. +||++.++.+.++.....+.. +. ++.+|.+|.+. + ++...+.+++.+
T Consensus 114 ~~i~~~~~~~e~~~~Rl~----~r~~~~~~~i~~rl~~~~~~~----~~-~~~~d~~i~n~-~----~~~~~~~l~~~~ 178 (180)
T TIGR03263 114 VSIFILPPSLEELERRLR----KRGTDSEEVIERRLAKAKKEI----AH-ADEFDYVIVND-D----LEKAVEELKSII 178 (180)
T ss_pred EEEEEECCCHHHHHHHHH----HcCCCCHHHHHHHHHHHHHHH----hc-cccCcEEEECC-C----HHHHHHHHHHHH
Confidence 468888888888888876 577777777777666555332 22 45699999883 3 344445555443
No 144
>PRK06217 hypothetical protein; Validated
Probab=87.03 E-value=2.3 Score=36.58 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCeEEEEeCCchhHHHHHhhhccccCCC
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTVERGR 28 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~erg~ 28 (301)
.|+.||+|+|.++++.|-..|+....|+
T Consensus 84 ~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~ 111 (183)
T PRK06217 84 FDLVVFLTIPPELRLERLRLREFQRYGN 111 (183)
T ss_pred CCEEEEEECCHHHHHHHHHcCcccccCc
Confidence 4789999999999999999998754343
No 145
>PRK04040 adenylate kinase; Provisional
Probab=86.74 E-value=1.6 Score=38.10 Aligned_cols=74 Identities=19% Similarity=0.211 Sum_probs=47.0
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC-CchhHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD-NHVAIDLIVQH 76 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~-~~~~~~~i~~~ 76 (301)
|..||++++.+.-+.||+..+-..|+.+-++.++++.+. -..|..++.-.....|.+|.|... -..|.+.+.+.
T Consensus 112 d~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~-a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~i 186 (188)
T PRK04040 112 DVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEM-NRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEV 186 (188)
T ss_pred CEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 678999999997777766543444666667777777764 334555555555667888876322 33455555443
No 146
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=86.44 E-value=1.1 Score=40.15 Aligned_cols=76 Identities=22% Similarity=0.404 Sum_probs=54.5
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHH-HHH---HHHHhhccchhHhhcccccccccEeecCCC----CCchhHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVD-SVL---EQYAKFVKPAFDDFVLPSKKYADVIIPRGG----DNHVAIDLI 73 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~-~v~---~~~~~~~~p~~~~~i~P~~~~ADiii~~~~----~~~~~~~~i 73 (301)
|+-||+|++.|+-+.| |. .|||+.| ..- .+|.+...-.|..|++-.-..-++.|++.. .|...++.+
T Consensus 128 dllIyLd~~~e~~l~R-I~----~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v 202 (216)
T COG1428 128 DLLIYLDASLETLLRR-IA----KRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKV 202 (216)
T ss_pred CEEEEEeCCHHHHHHH-HH----HhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHH
Confidence 8999999999986544 33 4799888 222 347777888899998887777778887633 244567777
Q ss_pred HHHHhhhcc
Q 022183 74 VQHIHTKLG 82 (301)
Q Consensus 74 ~~~i~~~l~ 82 (301)
+..|.+++.
T Consensus 203 ~~~I~~~~~ 211 (216)
T COG1428 203 LDQILAKLK 211 (216)
T ss_pred HHHHHHHHh
Confidence 777777653
No 147
>PRK13975 thymidylate kinase; Provisional
Probab=85.59 E-value=1.7 Score=37.44 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=40.8
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhccc---ccccccEeecCCCCC-chhHHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLP---SKKYADVIIPRGGDN-HVAIDLIVQHI 77 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P---~~~~ADiii~~~~~~-~~~~~~i~~~i 77 (301)
|+.||+++|.++.+.|-..|+ ++..+- ..|.+.++..|.++... ..+++.++|+.++.+ ....+.|.+.|
T Consensus 115 d~vi~L~~~~e~~~~Rl~~r~-----~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i 188 (196)
T PRK13975 115 DLVFLLDVDIEEALKRMETRD-----KEIFEK-KEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKI 188 (196)
T ss_pred CEEEEEcCCHHHHHHHHhccC-----ccccch-HHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHH
Confidence 789999999999987766564 221111 12333344455555431 114578999875332 23344555555
Q ss_pred hhh
Q 022183 78 HTK 80 (301)
Q Consensus 78 ~~~ 80 (301)
.++
T Consensus 189 ~~~ 191 (196)
T PRK13975 189 KDK 191 (196)
T ss_pred HHh
Confidence 444
No 148
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=85.36 E-value=2.3 Score=38.04 Aligned_cols=60 Identities=13% Similarity=0.303 Sum_probs=40.0
Q ss_pred CeEEEEeCCchhHHHHHhhhccc-cCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTV-ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~-erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
|+++|+|.|.++.+.|--.|... +|= |..-..+++.+|-.|.....-..+ .=++|+.+.+
T Consensus 129 D~ti~Ldv~~e~al~R~~~r~~~~~r~---E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~~ 189 (208)
T COG0125 129 DLTLYLDVPPEVALERIRKRGELRDRF---EKEDDEFLEKVREGYLELAAKFPE-RIIVIDASRP 189 (208)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCccchh---hhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCCC
Confidence 89999999999999999988665 221 222224555677777777655443 2356766444
No 149
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=84.20 E-value=3.2 Score=39.06 Aligned_cols=68 Identities=13% Similarity=0.291 Sum_probs=41.8
Q ss_pred eEEEEeCCchhHHHHHhhhccccCC----CC-HHHHHHHHHhhccchhHhhcccccccccEeecCCCCC-chhHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERG----RD-VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQH 76 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg----~~-~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~ 76 (301)
+.||+++|.+++..|=..|+- .|. .. .+.+.+.|.+ ++|-|+ +||++|+++... ....+.|.+.
T Consensus 229 ~~V~L~a~~e~~~~Rl~~r~~-~rp~~~~~~~~e~i~~~~~~-R~~~y~--------~ad~~I~t~~~s~ee~~~~I~~~ 298 (309)
T PRK08154 229 YTVWLKASPEEHMARVRAQGD-LRPMADNREAMEDLRRILAS-REPLYA--------RADAVVDTSGLTVAQSLARLREL 298 (309)
T ss_pred EEEEEECCHHHHHHHHhcCCC-CCCCCCCCChHHHHHHHHHH-HHHHHH--------hCCEEEECCCCCHHHHHHHHHHH
Confidence 579999999998877555542 222 22 3555555544 667664 399999876543 2344555555
Q ss_pred Hhhh
Q 022183 77 IHTK 80 (301)
Q Consensus 77 i~~~ 80 (301)
++..
T Consensus 299 l~~~ 302 (309)
T PRK08154 299 VRPA 302 (309)
T ss_pred HHHH
Confidence 5443
No 150
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=84.17 E-value=2.7 Score=45.32 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=59.0
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhhc
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKL 81 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l 81 (301)
|+|||++++.++|-.||..--.. .-+.++++++..+.=+-+..+=+.|.+.-.|.++=.+++ ..++.+++.|.+..
T Consensus 208 ~~KifL~As~e~RA~RR~~e~~~--~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~--l~ieevv~~i~~~~ 283 (863)
T PRK12269 208 DLKCYLDASIEARVARRWAQGTS--RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSC--LTIEEVCERIAREA 283 (863)
T ss_pred CEEEEEECCHHHHHHHHHHhhhc--cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCC--CCHHHHHHHHHHHH
Confidence 79999999999999999765442 378999999987655667777889999988877544333 34566666666655
Q ss_pred cccc
Q 022183 82 GQHD 85 (301)
Q Consensus 82 ~~~~ 85 (301)
..+.
T Consensus 284 ~~~~ 287 (863)
T PRK12269 284 HRRA 287 (863)
T ss_pred Hhcc
Confidence 5444
No 151
>PRK06762 hypothetical protein; Provisional
Probab=83.75 E-value=4.3 Score=33.93 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=26.3
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAK 39 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~ 39 (301)
..||+++|.++++.|...|+. .++.+.+.+-++|..
T Consensus 98 ~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~l~~~~~~ 133 (166)
T PRK06762 98 YTYYFDLSFEETLRRHSTRPK-SHEFGEDDMRRWWNP 133 (166)
T ss_pred EEEEEeCCHHHHHHHHhcccc-cccCCHHHHHHHHhh
Confidence 679999999999999999975 234455555555444
No 152
>PRK07933 thymidylate kinase; Validated
Probab=82.80 E-value=2.6 Score=37.50 Aligned_cols=74 Identities=9% Similarity=0.203 Sum_probs=44.5
Q ss_pred CeEEEEeCCchhHHHHHhhhccccC--CCC-HHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVER--GRD-VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIH 78 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~er--g~~-~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~ 78 (301)
|+.||+|.|.++.+.|.-.|.-... +.+ .|. -..|++.++-.|.++.......--++|++. ..++.|.+.|.
T Consensus 134 Dl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~----~~~e~v~~~i~ 208 (213)
T PRK07933 134 DLQVLLDVPVELAAERARRRAAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPD----VDPAALAARLA 208 (213)
T ss_pred CEEEEecCCHHHHHHHHHhhccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCC----CCHHHHHHHHH
Confidence 8999999999999988766643211 111 222 235666788888888753211233566652 23555555555
Q ss_pred hh
Q 022183 79 TK 80 (301)
Q Consensus 79 ~~ 80 (301)
+.
T Consensus 209 ~~ 210 (213)
T PRK07933 209 AA 210 (213)
T ss_pred HH
Confidence 43
No 153
>PRK14737 gmk guanylate kinase; Provisional
Probab=82.75 E-value=3.6 Score=35.84 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=35.6
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCC-CHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGR-DVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~-~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (301)
+.|||.+|+...+.+|+.+ ||. +.+++.....+ ..+.. .....||.||.|. +...+...+.+.|
T Consensus 118 ~~Ifi~pps~e~l~~RL~~----R~~~s~e~i~~Rl~~-~~~e~-----~~~~~~D~vI~N~-dle~a~~ql~~ii 182 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIH----RGTDSEESIEKRIEN-GIIEL-----DEANEFDYKIIND-DLEDAIADLEAII 182 (186)
T ss_pred EEEEEECCCHHHHHHHHHh----cCCCCHHHHHHHHHH-HHHHH-----hhhccCCEEEECc-CHHHHHHHHHHHH
Confidence 5799999875555555432 344 44555444443 33322 2357899999885 3333444444333
No 154
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=81.90 E-value=4.3 Score=35.79 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=46.1
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQ 75 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~ 75 (301)
+.||+.+|+-..|.||+.+ ||.+-++++..-+...+-....+- ..|.+|-| .+...|.+.+.+
T Consensus 116 v~IFi~pPs~eeL~~RL~~----Rgtds~e~I~~Rl~~a~~Ei~~~~-----~fdyvivN-dd~e~a~~~l~~ 178 (191)
T COG0194 116 VSIFILPPSLEELERRLKG----RGTDSEEVIARRLENAKKEISHAD-----EFDYVIVN-DDLEKALEELKS 178 (191)
T ss_pred EEEEEcCCCHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHHHHHH-----hCCEEEEC-ccHHHHHHHHHH
Confidence 5799999999999999987 898888888887776666655553 48888876 333344444433
No 155
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.37 E-value=3.8 Score=34.72 Aligned_cols=47 Identities=21% Similarity=0.410 Sum_probs=29.6
Q ss_pred CeEEEEeCCchhHHHHHhhhccc-cCCC-CHHH---HHHHHHhhccchhHhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTV-ERGR-DVDS---VLEQYAKFVKPAFDDF 48 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~-erg~-~~~~---v~~~~~~~~~p~~~~~ 48 (301)
|+.||+++|.++++.|...|... .|-. +.+. -+.+|.....|.++.|
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y 159 (188)
T TIGR01360 108 TLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYY 159 (188)
T ss_pred CEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHH
Confidence 68899999999988888777642 2222 2222 3344444456666666
No 156
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=81.34 E-value=3.4 Score=33.77 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=33.0
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCH--HHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDV--DSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~--~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
.+.||+++|.+++..|-..|+..--+.+. +.+.+-|++ +++.| ++.||++|+..
T Consensus 93 ~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~-r~~~Y-------~~~ad~~i~~~ 148 (154)
T cd00464 93 GIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEE-REPLY-------REVADLTIDTD 148 (154)
T ss_pred CeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHH-HHHHH-------HHhCcEEEECC
Confidence 36899999999888776666522222221 344554544 44444 44599999764
No 157
>PRK13973 thymidylate kinase; Provisional
Probab=81.20 E-value=4.1 Score=36.08 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhc
Q 022183 1 MNMKIFVDTDADVRLARRIRRD 22 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD 22 (301)
.|+.+|+|+|.++.+.|-..|.
T Consensus 129 PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 129 PDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred CCEEEEEeCCHHHHHHHHHhcc
Confidence 3899999999999999977774
No 158
>PRK08356 hypothetical protein; Provisional
Probab=81.19 E-value=4.7 Score=35.01 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=32.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccccC--CCCHHHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVER--GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~er--g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
...||+++|.++++.|-..|+...+ ..+.+++..-+.. ....|.. .-..+.||++|.|.
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~-~~~l~~~--~~~~~~aD~vI~N~ 176 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEW-EEKLYHT--TKLKDKADFVIVNE 176 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHhhhh--hhHHHhCcEEEECC
Confidence 3579999999887776556654322 1244444333221 2222221 12236899999763
No 159
>PRK13976 thymidylate kinase; Provisional
Probab=80.66 E-value=2.9 Score=37.17 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=35.6
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
|+.||+|+|.++.+.|. .+ ++ .++.-.+|++.++..|.++........ ++|++
T Consensus 126 Dl~i~Ldv~~e~a~~Ri-~~----~~--~e~~~~~~l~~v~~~Y~~l~~~~~~~~-~~id~ 178 (209)
T PRK13976 126 DITFVLDIDIELSLSRA-DK----NG--YEFMDLEFYDKVRKGFREIVIKNPHRC-HVITC 178 (209)
T ss_pred CEEEEEeCCHHHHHHHh-cc----cc--hhcccHHHHHHHHHHHHHHHHhCCCCe-EEEEC
Confidence 89999999999999996 22 22 233334566778889999976443333 34444
No 160
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=79.30 E-value=4.8 Score=34.42 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=37.9
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPR 62 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~ 62 (301)
|+.+|+|.|.++++.|.-.|+- +.+....-+.. .+.++-.|.+..+ ...-=+||++
T Consensus 120 Dl~~~Ldv~pe~~~~R~~~r~~--~~~~~~~~~~~-~~~~~~~y~~l~~--~~~~~~iid~ 175 (186)
T PF02223_consen 120 DLTFFLDVDPEEALKRIAKRGE--KDDEEEEDLEY-LRRVREAYLELAK--DPNNWVIIDA 175 (186)
T ss_dssp SEEEEEECCHHHHHHHHHHTSS--TTTTTTHHHHH-HHHHHHHHHHHHH--TTTTEEEEET
T ss_pred CEEEEEecCHHHHHHHHHcCCc--cchHHHHHHHH-HHHHHHHHHHHHc--CCCCEEEEEC
Confidence 8999999999999999999987 33333444443 4447777877775 2222255555
No 161
>PF15610 PRTase_3: PRTase ComF-like
Probab=79.25 E-value=3.6 Score=38.20 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=33.8
Q ss_pred EeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCC
Q 022183 203 IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVP 242 (301)
Q Consensus 203 ~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~ 242 (301)
||..-- .++|+++|++||+.-||+...+..+.+++.|+.
T Consensus 129 y~ID~~-~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~ 167 (274)
T PF15610_consen 129 YHIDKE-FLSGKHLIFLDDIKITGSHEDKVRKILKEYGLE 167 (274)
T ss_pred eEecHH-HhCCcEEEEeccEEecCcHHHHHHHHHHHcCcc
Confidence 454443 568999999999999999999999999999995
No 162
>PRK00300 gmk guanylate kinase; Provisional
Probab=78.73 E-value=6.1 Score=34.19 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=42.5
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhhcc
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLG 82 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l~ 82 (301)
+.||+.++++..+.+|+. +||++-++.+.++.+..+... ++. +.+|.+|.+. .++...+.+.+.+.
T Consensus 118 ~~I~i~~~s~~~l~~Rl~----~R~~~~~~~i~~rl~~~~~~~----~~~-~~~d~vi~n~-----~~e~~~~~l~~il~ 183 (205)
T PRK00300 118 VSIFILPPSLEELERRLR----GRGTDSEEVIARRLAKAREEI----AHA-SEYDYVIVND-----DLDTALEELKAIIR 183 (205)
T ss_pred EEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHH----HhH-HhCCEEEECC-----CHHHHHHHHHHHHH
Confidence 568998888888888876 477777777777776554332 332 5689999742 24555555555444
No 163
>PLN02200 adenylate kinase family protein
Probab=77.98 E-value=5.9 Score=35.83 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.4
Q ss_pred CeEEEEeCCchhHHHHHhhhcc
Q 022183 2 NMKIFVDTDADVRLARRIRRDT 23 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~ 23 (301)
|+.||+++|.++.+.|...|..
T Consensus 147 d~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 147 NVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred CEEEEEECCHHHHHHHHHcCcC
Confidence 7889999999999999888854
No 164
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=77.85 E-value=7.7 Score=32.82 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=34.6
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCC-CHHHHHHHHHhhccchhHhhcccccccccEe-ecCCCCCchhHHHHHHHHhhh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGR-DVDSVLEQYAKFVKPAFDDFVLPSKKYADVI-IPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~-~~~~v~~~~~~~~~p~~~~~i~P~~~~ADii-i~~~~~~~~~~~~i~~~i~~~ 80 (301)
+.||+++|.+++..|-..| ++ +.+.+...+. ..+.|.. ..||++ ++++.+ ++.+.+.|.+.
T Consensus 113 ~~i~l~~~~~~~~~Rl~~R-----~~~~~~~~~~rl~--~~~~~~~------~~~~~~vi~~~~~----~ee~~~~i~~~ 175 (179)
T TIGR02322 113 LVVNITASPDVLAQRLAAR-----GRESREEIEERLA--RSARFAA------APADVTTIDNSGS----LEVAGETLLRL 175 (179)
T ss_pred EEEEEECCHHHHHHHHHHc-----CCCCHHHHHHHHH--HHhhccc------ccCCEEEEeCCCC----HHHHHHHHHHH
Confidence 5789999998887776555 33 4454444443 2222221 457887 544322 44555555544
Q ss_pred c
Q 022183 81 L 81 (301)
Q Consensus 81 l 81 (301)
+
T Consensus 176 l 176 (179)
T TIGR02322 176 L 176 (179)
T ss_pred H
Confidence 4
No 165
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=77.20 E-value=9.8 Score=32.18 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.3
Q ss_pred CCeEEEEeCCchhHHHHHhhhccc
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTV 24 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~ 24 (301)
.|+.||+++|.++.+.|-..|...
T Consensus 104 ~d~~i~l~~~~~~~~~Rl~~R~~~ 127 (183)
T TIGR01359 104 FKFVLFFDCPEEVMIKRLLKRGQS 127 (183)
T ss_pred CCEEEEEECCHHHHHHHHhcCCcc
Confidence 368899999999999998888653
No 166
>PRK02496 adk adenylate kinase; Provisional
Probab=77.14 E-value=5.1 Score=34.22 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.1
Q ss_pred CeEEEEeCCchhHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~R 21 (301)
|+.||+++|.+++..|-..|
T Consensus 109 ~~vi~l~~~~~~~~~Rl~~R 128 (184)
T PRK02496 109 ERVVNLDVPDDVVVERLLAR 128 (184)
T ss_pred CEEEEEeCCHHHHHHHHhcC
Confidence 67899999999988777766
No 167
>PLN02924 thymidylate kinase
Probab=77.04 E-value=5 Score=36.03 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=40.5
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
|+.||+|+|.++.+.|.-.+ +...|+ ..|++.++-.|.++..+ .-.+|++........+.|.+.|.+.
T Consensus 137 Dlvi~Ld~~~~~a~~R~~~~-----~~~~E~--~~~~~rv~~~Y~~la~~----~~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 137 DLVLYLDISPEEAAERGGYG-----GERYEK--LEFQKKVAKRFQTLRDS----SWKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred CEEEEEeCCHHHHHHHhccC-----cccccc--HHHHHHHHHHHHHHhhc----CEEEECCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999874211 222333 35666788889888652 2245665433332334444444443
No 168
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=77.02 E-value=7.4 Score=33.31 Aligned_cols=63 Identities=24% Similarity=0.520 Sum_probs=37.2
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHH-HHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVD-SVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~-~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
+.|||.+++...|.+|+.+ ||.+-+ .+..+..+ .+-.+..+ .. .|.+|.|. + ++...+.|++.
T Consensus 116 ~~IfI~~~s~~~l~~~l~~----r~~~~~~~i~~r~~~-~~~~~~~~----~~-fd~vi~n~-~----le~~~~~l~~i 179 (183)
T PF00625_consen 116 IVIFIKPPSPEVLKRRLRR----RGDESEEEIEERLER-AEKEFEHY----NE-FDYVIVND-D----LEEAVKELKEI 179 (183)
T ss_dssp EEEEEEESSHHHHHHHHHT----TTHCHHHHHHHHHHH-HHHHHGGG----GG-SSEEEECS-S----HHHHHHHHHHH
T ss_pred eEEEEEccchHHHHHHHhc----cccccHHHHHHHHHH-HHHHHhHh----hc-CCEEEECc-C----HHHHHHHHHHH
Confidence 4699999999999999754 565543 44444333 32233322 22 89999863 3 44444444443
No 169
>PRK14531 adenylate kinase; Provisional
Probab=76.38 E-value=5.8 Score=34.07 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.0
Q ss_pred CeEEEEeCCchhHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~R 21 (301)
|+.||+++|.++...|-..|
T Consensus 109 ~~vi~l~~~~~~l~~Rl~~R 128 (183)
T PRK14531 109 EAVVLLELDDAVLIERLLAR 128 (183)
T ss_pred CeEEEEECCHHHHHHHhhcC
Confidence 67899999999988887666
No 170
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=76.18 E-value=10 Score=32.53 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=33.1
Q ss_pred EEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhccccccccc-EeecCCCCCchhHHHHHHHHhhhcc
Q 022183 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHIHTKLG 82 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i~~~l~ 82 (301)
-||+++|.++...|=..|+ +.+.+.+.+.+.+ .+ .| ..|| +||++... ++.+.+.|...+.
T Consensus 114 vi~l~~s~e~l~~RL~~R~----~~~~~~i~~rl~r--~~---~~-----~~ad~~vi~~~~s----~ee~~~~i~~~l~ 175 (186)
T PRK10078 114 PVCLQVSPEILRQRLENRG----RENASEINARLAR--AA---RY-----QPQDCHTLNNDGS----LRQSVDTLLTLLH 175 (186)
T ss_pred EEEEeCCHHHHHHHHHHhC----CCCHHHHHHHHHH--hh---hh-----ccCCEEEEeCCCC----HHHHHHHHHHHHh
Confidence 5889999888766555552 2255555555532 11 12 2467 67765333 4444555554443
No 171
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=75.42 E-value=7.3 Score=33.37 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=36.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCC
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~ 63 (301)
|+.||++++.++++.|...|+-.. ..+.--..|.+.++..|..+.+- ....++|++.
T Consensus 129 d~~i~l~~~~~~~~~R~~~r~~~~---~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~id~~ 185 (195)
T TIGR00041 129 DLTIYLDIDPEVALERLRKRGELD---REEFEKLDFFEKVRQRYLELADK--EKSIHVIDAT 185 (195)
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHcC--CCcEEEEeCC
Confidence 789999999999999988875421 11112233455566666666653 3456778763
No 172
>PRK13808 adenylate kinase; Provisional
Probab=75.03 E-value=7.1 Score=37.46 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.3
Q ss_pred CCeEEEEeCCchhHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~R 21 (301)
.|+.||+|.|.++.+.|-..|
T Consensus 107 PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 107 LDAVVELRVNEGALLARVETR 127 (333)
T ss_pred cCeEEEEECCHHHHHHHHHcC
Confidence 489999999999998887776
No 173
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=73.50 E-value=11 Score=32.41 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=38.6
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i 77 (301)
..||+.+++...|.+|+.. ||.+-++.+++-.....-... . ....|.+|.+. +...+.+.+.+.|
T Consensus 116 ~vIfi~~~s~~~l~~rl~~----R~~~~~~~i~~rl~~a~~~~~---~--~~~fd~~I~n~-~l~~~~~~l~~~i 180 (184)
T smart00072 116 IVIFIAPPSSEELERRLRG----RGTETAERIQKRLAAAQKEAQ---E--YHLFDYVIVND-DLEDAYEELKEIL 180 (184)
T ss_pred EEEEEeCcCHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHh---h--hccCCEEEECc-CHHHHHHHHHHHH
Confidence 6799999998888888874 676544444433332322222 1 25689999874 3333444444444
No 174
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=72.91 E-value=13 Score=31.05 Aligned_cols=68 Identities=21% Similarity=0.398 Sum_probs=38.4
Q ss_pred eEEEEeCCchhHHHHHhhhcccc--CCCCH-HHHHHHHHhhccchhHhhcccccccccEeecCCCCC-chhHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVE--RGRDV-DSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQHIH 78 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~e--rg~~~-~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~i~ 78 (301)
..||++.|.+.-..|--.++..- .+... +...+.+. .+.|.|+++ ||++++..... ...++.|++.|+
T Consensus 87 ~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~-------a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 87 LVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQA-------ADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp EEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHHH-------SSEEEETSSCHHHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHhc-------CeEEEeCCCCCHHHHHHHHHHHhC
Confidence 57999999997555544443311 12222 24555555 477877765 89999886665 344555555543
No 175
>PRK05541 adenylylsulfate kinase; Provisional
Probab=72.62 E-value=1.8 Score=36.84 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=34.2
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC--CchhHHHHHHHHhhh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD--NHVAIDLIVQHIHTK 80 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~--~~~~~~~i~~~i~~~ 80 (301)
+.||+++|.++.+.| ..|... ++...+.+.+-| ....|.|+. .||++|++.+. -...++.+++.+..+
T Consensus 104 ~~v~l~~~~e~~~~R-~~~~l~-~~~~~~~~~~~~-~~~~~~~~~-------~Ad~vI~~~~~~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 104 FEVYLKCDMEELIRR-DQKGLY-TKALKGEIKNVV-GVDIPFDEP-------KADLVIDNSCRTSLDEKVDLILNKLKLR 173 (176)
T ss_pred EEEEEeCCHHHHHHh-chhhHH-HHHHcCcccccc-cCCCcccCC-------CCCEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 578999999977766 333211 111111222222 224444432 38999998641 123445555555443
No 176
>PRK14527 adenylate kinase; Provisional
Probab=72.35 E-value=9.1 Score=32.99 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=18.9
Q ss_pred CeEEEEeCCchhHHHHHhhhcc
Q 022183 2 NMKIFVDTDADVRLARRIRRDT 23 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~ 23 (301)
++.||+++|.++++.|-..|-.
T Consensus 113 ~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 113 LAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred CEEEEEECCHHHHHHHHHcCcc
Confidence 5678999999999999988854
No 177
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=71.30 E-value=19 Score=29.43 Aligned_cols=58 Identities=22% Similarity=0.439 Sum_probs=43.7
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEee
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 275 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~~i 275 (301)
++++++|+|+ .+|++...++..|.++|+ ++|.+++ =+.+-.+++.+.++...+-....
T Consensus 9 ~l~~~~vlvi----GaGg~ar~v~~~L~~~g~--~~i~i~n--Rt~~ra~~l~~~~~~~~~~~~~~ 66 (135)
T PF01488_consen 9 DLKGKRVLVI----GAGGAARAVAAALAALGA--KEITIVN--RTPERAEALAEEFGGVNIEAIPL 66 (135)
T ss_dssp TGTTSEEEEE----SSSHHHHHHHHHHHHTTS--SEEEEEE--SSHHHHHHHHHHHTGCSEEEEEG
T ss_pred CcCCCEEEEE----CCHHHHHHHHHHHHHcCC--CEEEEEE--CCHHHHHHHHHHcCccccceeeH
Confidence 6789999975 589999999999999999 6787766 35667788888875443333333
No 178
>PHA03132 thymidine kinase; Provisional
Probab=70.97 E-value=2.5 Score=43.53 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=43.1
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHH-HHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSV-LEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTK 80 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v-~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~ 80 (301)
|+.||+|++.++.+.|--. |||..|.. =..|++.++-.|..... +-.+-. .+..+.+++....+
T Consensus 403 DLiIyLdv~pe~alkRIkk-----RgR~~E~~IdleYL~rLre~Y~~l~~------~Wl~lq----yf~~e~~v~~c~~~ 467 (580)
T PHA03132 403 DVIVLLKLNSEENLRRVKK-----RGRKEEKGINLTYLKELNWAYHAVYC------AWLLLQ----YFTPEDIVQVCLGT 467 (580)
T ss_pred CEEEEEeCCHHHHHHHHHh-----cCchhhhcCCHHHHHHHHHHHHHHHH------HHHHhc----CCChHHHHHHHhcC
Confidence 8999999999999998444 45555543 22566667777776632 222211 23455555555444
Q ss_pred cccccccc
Q 022183 81 LGQHDLCK 88 (301)
Q Consensus 81 l~~~~l~~ 88 (301)
-....+|.
T Consensus 468 ~~i~~~c~ 475 (580)
T PHA03132 468 TTITTVCH 475 (580)
T ss_pred CcHHHHHh
Confidence 44455554
No 179
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=67.72 E-value=65 Score=30.82 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=61.6
Q ss_pred cceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc-hH---HHHHHHHH
Q 022183 160 KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQL 235 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT-G~---t~~~ai~~ 235 (301)
+++++++ ..+...+.+.+.+.+ +.+.|.+.+.|=.. ...|.+++.++.|+.|+|+-.+... .. -+...++.
T Consensus 20 ~~~~i~~-g~~~~~la~~ia~~l-g~~l~~~~~~~FpD---GE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~a 94 (330)
T PRK02812 20 NRLRLFS-GSSNPALAQEVARYL-GMDLGPMIRKRFAD---GELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDA 94 (330)
T ss_pred CCEEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC---CCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHH
Confidence 3556666 567778888888775 56677766654322 2468899999999999999885433 22 25567888
Q ss_pred HHHcCCCCccEEEEEEE
Q 022183 236 LIEKGVPESHIIFLNLI 252 (301)
Q Consensus 236 L~~~g~~~~~I~~~~~v 252 (301)
+++.|+ ++|.++.+.
T Consensus 95 lr~~ga--~ri~~ViPY 109 (330)
T PRK02812 95 CRRASA--RQITAVIPY 109 (330)
T ss_pred HHHhCC--ceEEEEEec
Confidence 999999 789888854
No 180
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=65.24 E-value=87 Score=29.77 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=58.2
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc----hHHHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT----GNSANQAIQLL 236 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT----G~t~~~ai~~L 236 (301)
+.++++ ..+...|++.+.+.+ +.+.|.+.+.+=.. ...|.++++++.|+.|+++-.+-.. =-.+...++.|
T Consensus 5 ~~~i~~-~~~~~~la~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~al 79 (320)
T PRK02269 5 DLKLFA-LSSNKELAEKVAQEI-GIELGKSSVRQFSD---GEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDAL 79 (320)
T ss_pred CeEEEE-CCCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHH
Confidence 344444 466777888877765 56677666654322 2367888999999999998654321 12456778899
Q ss_pred HHcCCCCccEEEEEEE
Q 022183 237 IEKGVPESHIIFLNLI 252 (301)
Q Consensus 237 ~~~g~~~~~I~~~~~v 252 (301)
++.|+ ++|.++.+.
T Consensus 80 r~~~a--~~i~~V~PY 93 (320)
T PRK02269 80 KRASA--ESINVVMPY 93 (320)
T ss_pred HHhCC--CeEEEEEec
Confidence 99998 789888754
No 181
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=64.50 E-value=18 Score=33.93 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=34.8
Q ss_pred EEEEeCCchhHHHHHhhhccccC----CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHHH
Q 022183 4 KIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHI 77 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~RD~~er----g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i 77 (301)
-||++++.++.+.| +......| +.++.+.+. +. .+..+|.++.||++|+.++.+. ...+.|.+.+
T Consensus 89 iI~L~a~~e~L~~R-l~~~rr~RPLl~~~~l~e~I~---~e-----R~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l 158 (288)
T PRK05416 89 VLFLDASDEVLIRR-YSETRRRHPLSGDGSLLEGIE---LE-----RELLAPLRERADLVIDTSELSVHQLRERIRERF 158 (288)
T ss_pred EEEEECCHHHHHHH-HhhcccCCCccCCccHHHHHH---HH-----HhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 48999999988755 43211111 222222222 21 1224566788999998765443 2234444444
No 182
>PRK03846 adenylylsulfate kinase; Provisional
Probab=64.22 E-value=3.6 Score=35.83 Aligned_cols=66 Identities=14% Similarity=0.341 Sum_probs=33.3
Q ss_pred EEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCC-chhHHHHHHHHh
Q 022183 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQHIH 78 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~i~ 78 (301)
.||+++|.+++..|.- |....+++ .+.+ .++.....| |+ .| +.||++|+..... ...++.|++.++
T Consensus 125 ~V~L~~~~e~~~~R~~-r~l~~~~~-~~~~-~~l~~~r~~-Y~---~p--~~ad~~Idt~~~~~~~vv~~Il~~l~ 191 (198)
T PRK03846 125 EVFVDTPLAICEARDP-KGLYKKAR-AGEI-RNFTGIDSV-YE---AP--ESPEIHLDTGEQLVTNLVEQLLDYLR 191 (198)
T ss_pred EEEEcCCHHHHHhcCc-hhHHHHhh-cCCc-cCccccccc-CC---CC--CCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 6999999999988822 21111111 1111 112222333 32 22 6699999864433 233445555554
No 183
>PRK14528 adenylate kinase; Provisional
Probab=63.58 E-value=16 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.6
Q ss_pred CCeEEEEeCCchhHHHHHhhhcc
Q 022183 1 MNMKIFVDTDADVRLARRIRRDT 23 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~ 23 (301)
.|+.|++|+|.++++.|-..|-.
T Consensus 108 ~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 108 IDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred CCEEEEEECCHHHHHHHHhcCcc
Confidence 47899999999999988887744
No 184
>PRK14530 adenylate kinase; Provisional
Probab=62.46 E-value=19 Score=31.58 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=18.1
Q ss_pred CCeEEEEeCCchhHHHHHhhhc
Q 022183 1 MNMKIFVDTDADVRLARRIRRD 22 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD 22 (301)
.|+.||+|+|.++.+.|-..|.
T Consensus 106 ~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 106 LDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred CCEEEEEeCCHHHHHHHHhCCC
Confidence 3788999999999988766663
No 185
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=61.15 E-value=33 Score=31.82 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=51.5
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccc----cEeecCCCCCchhHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYA----DVIIPRGGDNHVAIDLIVQHIH 78 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~A----Diii~~~~~~~~~~~~i~~~i~ 78 (301)
+.||++++.|.++.|...|.-.+| ++ +++++. ++.+|-+|...+. -++|+. .+....++.|.+.|.
T Consensus 101 c~i~~~~~~e~~~~~N~~R~~~~~-~~-~e~i~~-------m~~RfE~P~~~nrWD~plf~i~~-~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 101 CVIYCDCPLETCLQRNSKRPEPER-YP-EETIDD-------MIQRFEEPDPKNRWDSPLFTIDS-SDEELPLEEIWNALF 170 (270)
T ss_dssp EEEEEE--HHHHHHHHHHTT-S---S--HHHHHH-------HHHH---TTSS-GGGS-SEEEE--TTS---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHhhhccCCCCC-CC-HHHHHH-------HHHHhcCCCCCCCccCCeEEEec-CCCCCCHHHHHHHHH
Confidence 569999999999999998875433 33 444433 4445666766442 566764 444455677777662
Q ss_pred hhccccccccCCCceeeccchHHHHHHhhhhhcCCCChhhhHhhHHHHHHHHHHHHhCCC
Q 022183 79 TKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHL 138 (301)
Q Consensus 79 ~~l~~~~l~~~~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~eal~~l 138 (301)
+.- . ..+|.-... +..+...|.+-+|+..+-++-++++..
T Consensus 171 ~~~---~---~~pn~~t~~--------------~~~~~~n~lh~lD~~tr~iv~~il~~~ 210 (270)
T PF08433_consen 171 ENK---P---LPPNQATQS--------------KPLSSTNFLHELDKITREIVSEILKAQ 210 (270)
T ss_dssp HHH---T---S--SSSTT---------------------HHHHHHHHHHHHHHHHHHH--
T ss_pred hcC---C---CCCCccccC--------------CCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 111 1 111111111 112355788888888887777777654
No 186
>PLN02842 nucleotide kinase
Probab=61.09 E-value=29 Score=35.22 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=26.9
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHc-CCCCccEEEEE
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEK-GVPESHIIFLN 250 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~-g~~~~~I~~~~ 250 (301)
++.-.|++-|.-+.|.+...-++.+.+. |- +-|++++
T Consensus 356 ~d~~~i~v~P~~~v~~~~~~~~e~~~~~~~~--rpvilln 393 (505)
T PLN02842 356 EDDMFILVAPQNAVGNCIIDDLQAMTTAAGK--RPVILVN 393 (505)
T ss_pred CCcEEEEEcCCccccccchHHHHHHHHHhCC--CeEEEEC
Confidence 4577888888888888888888888763 43 3366666
No 187
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=60.54 E-value=87 Score=25.14 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc--hH--HHHHHHHHHHHcCCCCc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPES 244 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT--G~--t~~~ai~~L~~~g~~~~ 244 (301)
.+...|.+.+.+.+ +.+.+.+-..+=.. ...|.+++.++.|++|+|+=.+... .. -+.-.++.+++.|+ +
T Consensus 7 ~~~~~La~~ia~~L-~~~~~~~~~~~F~d---GE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a--~ 80 (116)
T PF13793_consen 7 SSSQDLAERIAEAL-GIPLGKVETKRFPD---GETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGA--K 80 (116)
T ss_dssp SSGHHHHHHHHHHT-TS-EE-EEEEE-TT---S-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTB--S
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEEcCC---CCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCC--c
Confidence 45566777777766 45666655554322 2468888999999999999888765 22 45567888899998 7
Q ss_pred cEEEEEE
Q 022183 245 HIIFLNL 251 (301)
Q Consensus 245 ~I~~~~~ 251 (301)
+|.++.+
T Consensus 81 ~i~~ViP 87 (116)
T PF13793_consen 81 RITLVIP 87 (116)
T ss_dssp EEEEEES
T ss_pred EEEEecc
Confidence 8877763
No 188
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=59.68 E-value=34 Score=30.79 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=38.3
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH 67 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~ 67 (301)
-.|-|-||.++.+.|-+.|| +-+.++.-+.... .-|--++ ++-||+||+|+++-.
T Consensus 128 ~tvvV~cd~~~Ql~Rl~~Rd----~lse~dAe~Rl~s-Qmp~~~k-----~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 128 KTVVVTCDEELQLERLVERD----ELSEEDAENRLQS-QMPLEKK-----CELADVVIDNNGSLE 182 (225)
T ss_pred eEEEEEECcHHHHHHHHHhc----cccHHHHHHHHHh-cCCHHHH-----HHhhheeecCCCChH
Confidence 46889999999999999999 3444444444332 4443333 478999999866654
No 189
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=59.52 E-value=17 Score=34.12 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=36.5
Q ss_pred EEEEeCCchhHHHHHhh-hcc---ccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhH
Q 022183 4 KIFVDTDADVRLARRIR-RDT---VERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAI 70 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~-RD~---~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~ 70 (301)
.||+|++.++-+.|--. |-- ...|..++.+-. ..+.++|.++.||+||+.++-+.-.+
T Consensus 85 ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~---------Er~~L~~lr~~Ad~vIDTs~l~~~~L 146 (284)
T PF03668_consen 85 ILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEK---------ERELLEPLRERADLVIDTSNLSVHQL 146 (284)
T ss_pred EEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHH---------HHHHHHHHHHhCCEEEECCCCCHHHH
Confidence 48999999987665321 111 112334444222 35667899999999999876665444
No 190
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=59.46 E-value=24 Score=27.58 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=45.8
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHH---cCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIE---KGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~---~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~ 273 (301)
+.++-.++++-----|..+-.++++.+++ .+-|...|++...++...+ +.+.+.+|+|.+|.+
T Consensus 33 ~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~-~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 33 DPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYG-EELKKEFPEVDLVVG 98 (98)
T ss_pred ccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccCh-HHHHhhCCCeEEEeC
Confidence 34667889998888889988888777665 3412245666667777776 788999999988764
No 191
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=58.49 E-value=1.3e+02 Score=28.38 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=52.3
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEE-ccccc----chHHHHHHHHHHHHcCCCC
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLL-DPVLA----TGNSANQAIQLLIEKGVPE 243 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~-Dp~la----TG~t~~~ai~~L~~~g~~~ 243 (301)
.+...+.+.+.+.+ +.+.|.+-..+=.. ...|.+++.++.|+.|+++ -.+-. .=--+...++.+++.|+
T Consensus 7 ~~~~~la~~ia~~l-g~~~~~~~~~~Fpd---GE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga-- 80 (308)
T TIGR01251 7 SSNQELAQKVAKNL-GLPLGDVEVKRFPD---GELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASA-- 80 (308)
T ss_pred CCCHHHHHHHHHHh-CCeeeeeEEEECCC---CCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCC--
Confidence 45566777777765 46666655543221 2468888999999999998 54431 11245677888999998
Q ss_pred ccEEEEEEE
Q 022183 244 SHIIFLNLI 252 (301)
Q Consensus 244 ~~I~~~~~v 252 (301)
++|.++.+-
T Consensus 81 ~~i~~v~PY 89 (308)
T TIGR01251 81 KSITAVIPY 89 (308)
T ss_pred CeEEEEEEe
Confidence 788888754
No 192
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=57.82 E-value=18 Score=31.90 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=26.8
Q ss_pred CeEEEEeCCchhHHHHHhhhcccc-C-CCCHHHHHHH
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVE-R-GRDVDSVLEQ 36 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~e-r-g~~~~~v~~~ 36 (301)
|+.+|+||+.|+++-|-+.|+... | -.+.+++-.+
T Consensus 114 ~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR 150 (195)
T KOG3079|consen 114 DFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKR 150 (195)
T ss_pred CEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHH
Confidence 789999999999999999998874 3 2334444444
No 193
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=55.28 E-value=36 Score=32.42 Aligned_cols=97 Identities=14% Similarity=0.271 Sum_probs=56.8
Q ss_pred cceeEEEecccchHHH--------HHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHH
Q 022183 160 KKLCGVSIVRSGESME--------NALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQ 231 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~--------~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ 231 (301)
++-+++|=++||-+|. ..+++.+|++.+ +.|.+-...++... +.+-|-+.+.+
T Consensus 91 eK~VL~Pd~~AgCsmA~~~~~~~~~~~~~~~P~~~v--------------V~YvNtsA~vKA~~-----Di~cTSsNAvk 151 (324)
T COG0379 91 EKTVLLPDLEAGCSMADMITAEEVRAFKEKHPDAPV--------------VTYVNTSAEVKAEA-----DICCTSSNAVK 151 (324)
T ss_pred CCeEecCCCCCCCCcccCCCHHHHHHHHHHCCCCce--------------EEEeeChHHHHhhc-----CeEEecchHHH
Confidence 5669999999999997 446777787765 22333333333222 23333333333
Q ss_pred HHHHH-------------------HHcCCCCccEEEEE---EE---eCHHHHHHHHHhCCCcEEEEEeecCCCC
Q 022183 232 AIQLL-------------------IEKGVPESHIIFLN---LI---SAPEGIHCVCKRFPSLKIVTSEIDVALN 280 (301)
Q Consensus 232 ai~~L-------------------~~~g~~~~~I~~~~---~v---as~~gl~~l~~~~p~v~i~t~~iD~~l~ 280 (301)
.++.+ ++-|. ++|++-- .| .+.+-|.++.++||+.+|.+ .|+..
T Consensus 152 vVe~~~~~~~Iif~PD~~Lg~yva~~tg~--k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlv---HPEC~ 220 (324)
T COG0379 152 VVESALDGDKILFLPDKNLGRYVAKQTGA--KKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLV---HPECP 220 (324)
T ss_pred HHHhccCCCcEEEcCcHHHHHHHHHHcCC--CcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEE---CCCCC
Confidence 44332 12233 3454432 22 56888999999999999876 56543
No 194
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=54.52 E-value=36 Score=34.75 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=41.5
Q ss_pred eEEEEeCCchhHHHHHhhhccccC----CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVER----GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHI 77 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~er----g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i 77 (301)
+.||+++|.+....| +.++- .| +.+.+.+.+-|.+ ++|.|. +.||++|+....+. ...+.|++.+
T Consensus 105 ~vv~L~~~~~~l~~R-l~~~~-~RPll~~~~~~~~~~l~~~-R~~~Y~-------~~Ad~~i~~~~~~~~~~~~~i~~~~ 174 (542)
T PRK14021 105 RVVYLDADPKEAMER-ANRGG-GRPMLNGDANKRWKKLFKQ-RDPVFR-------QVANVHVHTRGLTPQAAAKKLIDMV 174 (542)
T ss_pred EEEEEECCHHHHHHH-HhCCC-CCCCCCCCcHHHHHHHHHH-HHHHHH-------hhCCEEEECCCCCHHHHHHHHHHHH
Confidence 579999999987776 44432 22 2234455555554 777774 46999998655443 3445555555
Q ss_pred hh
Q 022183 78 HT 79 (301)
Q Consensus 78 ~~ 79 (301)
++
T Consensus 175 ~~ 176 (542)
T PRK14021 175 AE 176 (542)
T ss_pred Hh
Confidence 53
No 195
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=54.32 E-value=2e+02 Score=27.48 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=62.5
Q ss_pred ccceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH--HHHHHHHHH
Q 022183 159 CKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN--SANQAIQLL 236 (301)
Q Consensus 159 ~~~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~--t~~~ai~~L 236 (301)
.+++.+++- .+...+.+.+.+.+-+.+.|.+-+++=.. |....+.+++.++.|++|+++=++...-. -+...++.|
T Consensus 14 ~~~~~i~~g-~~~~~LA~~ia~~l~g~~l~~~~~~~FpD-GE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dAl 91 (326)
T PLN02297 14 KKQVHLFYC-EETEELARKIAAESDAIELGSINWRKFPD-GFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYAL 91 (326)
T ss_pred CCCeEEEEC-CCCHHHHHHHHHHhCCCceeeeEEEECCC-CCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 345554443 67788999998876678888877765432 33344667778999999999887543311 234567788
Q ss_pred HHcCCCCccEEEEEEE
Q 022183 237 IEKGVPESHIIFLNLI 252 (301)
Q Consensus 237 ~~~g~~~~~I~~~~~v 252 (301)
++.|+ ++|.++.+.
T Consensus 92 r~~ga--~~i~~ViPY 105 (326)
T PLN02297 92 PKLFV--ASFTLVLPF 105 (326)
T ss_pred HHcCC--CEEEEEeeC
Confidence 88999 789888864
No 196
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=54.19 E-value=30 Score=25.12 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=32.0
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 266 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p 266 (301)
+++.|++++ .+|.....+...|++.|. +++.++ ..|+....+.+|
T Consensus 55 ~~~~iv~~c---~~g~~a~~~~~~l~~~G~--~~v~~l-----~GG~~~w~~~~~ 99 (100)
T smart00450 55 KDKPVVVYC---RSGNRSAKAAWLLRELGF--KNVYLL-----DGGYKEWSAAGP 99 (100)
T ss_pred CCCeEEEEe---CCCcHHHHHHHHHHHcCC--CceEEe-----cCCHHHHHhcCC
Confidence 467888887 678888899999999998 454322 346666665544
No 197
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=53.91 E-value=1.2e+02 Score=28.31 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH---HHHHHHHHHHHcCCCCcc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESH 245 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~---t~~~ai~~L~~~g~~~~~ 245 (301)
.+...|++.+.+.+ +.+.|.+-.+|=.. ...|.+++.++.|+.|+++-..-.-.. -+...++.|++.|+ ++
T Consensus 6 ~~~~~la~~ia~~l-~~~~~~~~~~~Fpd---GE~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga--~~ 79 (285)
T PRK00934 6 SASQLLASEVARLL-NTELALVETKRFPD---GELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA--KS 79 (285)
T ss_pred CCCHHHHHHHHHHH-CCceEeeEEEECCC---CCEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC--Ce
Confidence 55667887777764 77788777765432 236788888999999988876432122 35567788899999 78
Q ss_pred EEEEEEE
Q 022183 246 IIFLNLI 252 (301)
Q Consensus 246 I~~~~~v 252 (301)
|.++.+-
T Consensus 80 i~~v~PY 86 (285)
T PRK00934 80 ITLVIPY 86 (285)
T ss_pred EEEEecC
Confidence 8887743
No 198
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=50.66 E-value=46 Score=34.50 Aligned_cols=30 Identities=30% Similarity=0.310 Sum_probs=24.8
Q ss_pred EeCHHHHHHHHHhCCCcEEEEEeecCCCCC
Q 022183 252 ISAPEGIHCVCKRFPSLKIVTSEIDVALNE 281 (301)
Q Consensus 252 vas~~gl~~l~~~~p~v~i~t~~iD~~l~~ 281 (301)
+-+++|.+.|.++||+++++++.-..+-.+
T Consensus 404 ils~eG~e~L~~~~P~ik~IaS~Y~~~~~~ 433 (585)
T PF09960_consen 404 ILSEEGREALKKAFPEIKTIASLYFGDDEE 433 (585)
T ss_pred ccCHHHHHHHHHhCCCeEEEEEeeecCCcC
Confidence 578999999999999999888876555443
No 199
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=49.71 E-value=12 Score=32.26 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.5
Q ss_pred EEEEcccccchHHHHHHHH
Q 022183 216 VLLLDPVLATGNSANQAIQ 234 (301)
Q Consensus 216 Vil~Dp~laTG~t~~~ai~ 234 (301)
=+|+||...||.|+.+|.+
T Consensus 193 diVlDpF~GSGTT~~aa~~ 211 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEE 211 (231)
T ss_dssp -EEEETT-TTTHHHHHHHH
T ss_pred eeeehhhhccChHHHHHHH
Confidence 4689999999999998876
No 200
>PRK13948 shikimate kinase; Provisional
Probab=48.31 E-value=71 Score=27.70 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=36.4
Q ss_pred eEEEEeCCchhHHHHHhhhccc---cCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQHIH 78 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~---erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~i~ 78 (301)
..||+++|.++-..| +.++.. ..+...+.+.+.|.+ ++|-| +.||++|+..+... ...+.|.+.++
T Consensus 105 ~vV~L~~~~e~l~~R-l~~~~RPll~~~~~~~~l~~l~~~-R~~~Y--------~~a~~~i~t~~~~~~ei~~~i~~~l~ 174 (182)
T PRK13948 105 PVVVLWASPETIYER-TRPGDRPLLQVEDPLGRIRTLLNE-REPVY--------RQATIHVSTDGRRSEEVVEEIVEKLW 174 (182)
T ss_pred eEEEEECCHHHHHHH-hcCCCCCCCCCCChHHHHHHHHHH-HHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 579999998876665 543310 112223444544544 55544 23899998644332 33345555554
Q ss_pred h
Q 022183 79 T 79 (301)
Q Consensus 79 ~ 79 (301)
.
T Consensus 175 ~ 175 (182)
T PRK13948 175 A 175 (182)
T ss_pred H
Confidence 4
No 201
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=48.30 E-value=1.3e+02 Score=30.05 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=60.7
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc--h--HHHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--G--NSANQAIQLL 236 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT--G--~t~~~ai~~L 236 (301)
+.++++ ..+...|++.+.+.+ +.+.|.+.+.|=.. ...|.+++.++.|+.|+|+-+.... - --+...++.+
T Consensus 119 ~m~I~s-gs~~~~LA~~IA~~L-g~~l~~~~~~rFpD---GE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAl 193 (439)
T PTZ00145 119 NAILFS-GSSNPLLSKNIADHL-GTILGRVHLKRFAD---GEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTC 193 (439)
T ss_pred CeEEEE-CCCCHHHHHHHHHHh-CCCceeeEEEECCC---CCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHH
Confidence 455554 467778888888776 67788777765422 2367888999999999998864322 1 2456678889
Q ss_pred HHcCCCCccEEEEEEE
Q 022183 237 IEKGVPESHIIFLNLI 252 (301)
Q Consensus 237 ~~~g~~~~~I~~~~~v 252 (301)
++.|+ ++|.+|.+.
T Consensus 194 r~agA--krItlViPY 207 (439)
T PTZ00145 194 RRASA--KKITAVIPY 207 (439)
T ss_pred HHhcc--CeEEEEeec
Confidence 99999 789888854
No 202
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=48.21 E-value=2.4e+02 Score=26.80 Aligned_cols=78 Identities=14% Similarity=0.265 Sum_probs=54.0
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH----HHHHHHHHHHHcCCCCc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 244 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~----t~~~ai~~L~~~g~~~~ 244 (301)
.+...+.+.+.+.+ +.+.|.+.+.|=.. ...|.+++.++.|+.|+++=..-...+ -+...++.|++.|+ +
T Consensus 13 ~~~~~La~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~a--~ 86 (319)
T PRK04923 13 NANKPLAQSICKEL-GVRMGKALVTRFSD---GEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRASA--A 86 (319)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcCC--c
Confidence 56677888877765 66777777665322 236888999999999988854322212 34556778889998 7
Q ss_pred cEEEEEEE
Q 022183 245 HIIFLNLI 252 (301)
Q Consensus 245 ~I~~~~~v 252 (301)
+|.++.+.
T Consensus 87 ~i~~ViPY 94 (319)
T PRK04923 87 SVTAVIPY 94 (319)
T ss_pred EEEEEeec
Confidence 89887753
No 203
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=47.92 E-value=2e+02 Score=28.11 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=56.2
Q ss_pred ceeEEEecccchHHHHHHHHhc---------------c----C--CeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEE
Q 022183 161 KLCGVSIVRSGESMENALRACC---------------K----G--IKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLL 219 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~---------------p----~--a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~ 219 (301)
++.+++ +.++..+++.+.+.+ - + .+.|.+.+.+=.. ...|.+++.++.|+.|+|+
T Consensus 8 ~~~i~~-~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpD---GE~~vri~~~Vrg~dV~iv 83 (382)
T PRK06827 8 SLGIIA-LPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSN---GEAKGEILESVRGKDIYIL 83 (382)
T ss_pred ceEEEE-CCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCC---CCEEEEECCCCCCCeEEEE
Confidence 455555 678888888877776 1 2 2244444433211 2468889999999999999
Q ss_pred ccccc--------------c-hH---HHHHHHHHHHHcCCCCccEEEEEEE
Q 022183 220 DPVLA--------------T-GN---SANQAIQLLIEKGVPESHIIFLNLI 252 (301)
Q Consensus 220 Dp~la--------------T-G~---t~~~ai~~L~~~g~~~~~I~~~~~v 252 (301)
-++.. . -. -+...++.++ .|+ ++|.++.+.
T Consensus 84 qs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA--~rIt~ViPY 131 (382)
T PRK06827 84 QDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKA--RRITVIMPF 131 (382)
T ss_pred ecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCC--CeEEEEeec
Confidence 88642 1 12 3445788888 898 789888754
No 204
>PF11181 YflT: Heat induced stress protein YflT
Probab=47.41 E-value=29 Score=27.05 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022183 223 LATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 265 (301)
Q Consensus 223 laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~ 265 (301)
..|...+..+|+.|+..|..+++|++++= -.+-++.|...-
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva~--d~~~~~~l~~~t 46 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVAK--DKDRTERLADQT 46 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEEc--CchHHHHHHHhc
Confidence 34788999999999999999899976652 567777887654
No 205
>PLN02469 hydroxyacylglutathione hydrolase
Probab=46.99 E-value=80 Score=28.92 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=37.2
Q ss_pred CcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE-E-EeCHHHHHHHHHhCCCcEEEEEeec
Q 022183 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-L-ISAPEGIHCVCKRFPSLKIVTSEID 276 (301)
Q Consensus 213 ~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~-~-vas~~gl~~l~~~~p~v~i~t~~iD 276 (301)
++.++++||.- ....++.+++.|.+.+. ++++ - .-=-.|+..|.+++|+++||+..-|
T Consensus 22 ~~~~vlIDp~~-----~~~il~~l~~~g~~l~~-Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~ 81 (258)
T PLN02469 22 TKDAAVVDPVD-----PEKVLQAAHEHGAKIKL-VLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD 81 (258)
T ss_pred CCeEEEECCCC-----hHHHHHHHHHcCCcccE-EEecCCCCccccCHHHHHHHCCCCEEEEechh
Confidence 46899999862 34566667777753211 1111 0 1224678889999999999987654
No 206
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=46.92 E-value=30 Score=29.30 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.4
Q ss_pred CeEEEEeCCchhHHHHHhhhccc
Q 022183 2 NMKIFVDTDADVRLARRIRRDTV 24 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~ 24 (301)
|+.||+++|.++++.|-..|...
T Consensus 106 ~~~i~l~~~~~~~~~Rl~~R~~~ 128 (194)
T cd01428 106 DKVIELDVPDEVLIERILGRRIC 128 (194)
T ss_pred CEEEEEECCHHHHHHHHHcCCcC
Confidence 67899999999999999888754
No 207
>PHA03136 thymidine kinase; Provisional
Probab=46.49 E-value=11 Score=36.77 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=34.3
Q ss_pred CeEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcc
Q 022183 2 NMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVL 50 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~ 50 (301)
|+.||++++.++.+.|=- +|||+.|.+=..|++.++-.|+.|+.
T Consensus 193 D~IIyL~l~~e~~~~RI~-----kRgR~~E~I~~~YL~~L~~~Y~~~~n 236 (378)
T PHA03136 193 GNIVIMDLDECEHAERII-----ARGRPGEAIDVRFLCALHNIYICFMN 236 (378)
T ss_pred CEEEEEeCCHHHHHHHHH-----HcCCCccCCCHHHHHHHHHHHHHHHH
Confidence 678999999998877643 46777775555888888888988874
No 208
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=46.15 E-value=2.4e+02 Score=26.83 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=58.5
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc-hH---HHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLL 236 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT-G~---t~~~ai~~L 236 (301)
++++++- .+...|++.+.+.+ +.+.|.+.+.+=.. ...|.+++.++.|+.|+++-.+-.. -. -+...++.+
T Consensus 9 ~~~i~~~-~~~~~la~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~al 83 (323)
T PRK02458 9 QIKLFSL-NSNLEIAEKIAQAA-GVPLGKLSSRQFSD---GEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDAC 83 (323)
T ss_pred CeEEEEC-CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHH
Confidence 4454443 66778888887765 67777776655322 2368899999999999998764322 11 345667788
Q ss_pred HHcCCCCccEEEEEEE
Q 022183 237 IEKGVPESHIIFLNLI 252 (301)
Q Consensus 237 ~~~g~~~~~I~~~~~v 252 (301)
++.|+ ++|.++.+.
T Consensus 84 r~~~a--~~i~lViPY 97 (323)
T PRK02458 84 KRASA--NTVNVVLPY 97 (323)
T ss_pred HHcCC--ceEEEEEec
Confidence 89998 789888854
No 209
>PRK14532 adenylate kinase; Provisional
Probab=45.74 E-value=83 Score=26.65 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=16.8
Q ss_pred CCeEEEEeCCchhHHHHHhhh
Q 022183 1 MNMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~R 21 (301)
.|+.||+++|.++.+.|-..|
T Consensus 107 pd~vi~L~v~~~~~~~Rl~~R 127 (188)
T PRK14532 107 IDVVIRLKVDDEALIERIVKR 127 (188)
T ss_pred CCEEEEEECCHHHHHHHHHcC
Confidence 368999999999877776655
No 210
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=45.21 E-value=64 Score=29.31 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=41.8
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh----------CCCcEEEEEeecCCCCCCCeeecCCCc
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR----------FPSLKIVTSEIDVALNEEFRVIPGLGE 291 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~----------~p~v~i~t~~iD~~l~~~~~ivPGlGd 291 (301)
.+.||+|+..+++.|-+ .+..+ .-+..++++..-+.+.+. +|.+.|+.-.-| ++|.++..+.|.|-
T Consensus 25 GlGTGST~~~fI~~Lg~-~~~~e--~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGAD-Evd~~~~lIKGGGg 100 (227)
T COG0120 25 GLGTGSTAAYFIEALGR-RVKGE--LDIGGVPTSFQTEELARELGIPVSSLNEVDSLDLAIDGAD-EVDPNLNLIKGGGG 100 (227)
T ss_pred EEcCcHHHHHHHHHHHH-hhccC--ccEEEEeCCHHHHHHHHHcCCeecCccccCccceEeeccc-ccCCCCCEEccChH
Confidence 57899999999999975 23212 233444454444544443 333445443333 56777889999886
Q ss_pred hh
Q 022183 292 FG 293 (301)
Q Consensus 292 ~G 293 (301)
|-
T Consensus 101 Al 102 (227)
T COG0120 101 AL 102 (227)
T ss_pred HH
Confidence 64
No 211
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=44.12 E-value=1.9e+02 Score=27.25 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH---HHHHHHHHHHHcCCCCcc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN---SANQAIQLLIEKGVPESH 245 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~---t~~~ai~~L~~~g~~~~~ 245 (301)
.+...|.+.+.+.+ +.+.|.+...|=.. ...|.++++++.|+.|+++-.+..--. -+...++.|++.|+ ++
T Consensus 9 ~~~~~la~~ia~~l-g~~~~~~~~~~F~d---GE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a--~~ 82 (301)
T PRK07199 9 PGNEAAAGRLAAAL-GVEVGRIELHRFPD---GESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGA--RR 82 (301)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCC--Ce
Confidence 45556777777765 56677666654322 235788888999999999988654212 45567788899998 78
Q ss_pred EEEEEEE
Q 022183 246 IIFLNLI 252 (301)
Q Consensus 246 I~~~~~v 252 (301)
|.++.+.
T Consensus 83 i~~ViPY 89 (301)
T PRK07199 83 VGLVAPY 89 (301)
T ss_pred EEEEeec
Confidence 9887753
No 212
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.10 E-value=2.6e+02 Score=26.35 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH----HHHHHHHHHHHcCCCCc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 244 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~----t~~~ai~~L~~~g~~~~ 244 (301)
.+...+.+.+.+.+ +.+.|.+...+=.. ...|.+++.++.|+.|+++=..-...+ -+...++.+++.|+ +
T Consensus 7 ~~~~~la~~ia~~l-g~~~~~~~~~~Fpd---GE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga--~ 80 (309)
T PRK01259 7 NANPELAEKIAKYL-GIPLGKASVGRFSD---GEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASA--G 80 (309)
T ss_pred CCCHHHHHHHHHHh-CCceeeeEEEECCC---CCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCC--c
Confidence 45566777776654 56666655544221 236788889999999998855322212 35667888999998 7
Q ss_pred cEEEEEEE
Q 022183 245 HIIFLNLI 252 (301)
Q Consensus 245 ~I~~~~~v 252 (301)
+|.++.+-
T Consensus 81 ~i~lViPY 88 (309)
T PRK01259 81 RITAVIPY 88 (309)
T ss_pred eEEEEeec
Confidence 88888754
No 213
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=43.46 E-value=88 Score=23.74 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeC---------HHHHHHHHHhCCCcEEEEE
Q 022183 228 SANQAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 228 t~~~ai~~L~~~g~~~~~I~~~~~vas---------~~gl~~l~~~~p~v~i~t~ 273 (301)
++..+++.|.+.|+ ++|+++-++.. ++.+++++..||++++..+
T Consensus 45 ~~~~~l~~l~~~g~--~~v~vvPlfl~~G~h~~~dip~~~~~~~~~~~~~~i~~~ 97 (101)
T cd03416 45 SLAEALDELAAQGA--TRIVVVPLFLLAGGHVKEDIPAALAAARARHPGVRIRYA 97 (101)
T ss_pred CHHHHHHHHHHcCC--CEEEEEeeEeCCCccccccHHHHHHHHHHHCCCeEEEec
Confidence 45568888988898 67887775433 4466677778998877654
No 214
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.95 E-value=2e+02 Score=27.58 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=58.7
Q ss_pred ceeEEEecccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc-hH---HHHHHHHHH
Q 022183 161 KLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT-GN---SANQAIQLL 236 (301)
Q Consensus 161 ~i~~V~IlRaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT-G~---t~~~ai~~L 236 (301)
++.+++- .+...|.+.+.+.+ +.+.|.+.++|=... ..|.+++.++.|+.|+|+=++... .. -+...++.+
T Consensus 9 ~~~i~~~-~~~~~La~~ia~~l-g~~l~~~~~~~FpdG---E~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~al 83 (332)
T PRK00553 9 NHVIFSL-SKAKKLVDSICRKL-SMKPGEIVIQKFADG---ETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDAL 83 (332)
T ss_pred CeEEEEC-CCCHHHHHHHHHHh-CCceeeeEEEECCCC---CEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHH
Confidence 4444433 56677888887765 677887777654222 368888899999999998775432 11 255678888
Q ss_pred HHcCCCCccEEEEEEE
Q 022183 237 IEKGVPESHIIFLNLI 252 (301)
Q Consensus 237 ~~~g~~~~~I~~~~~v 252 (301)
++.|+ ++|.++.+.
T Consensus 84 r~~~a--~~i~~ViPY 97 (332)
T PRK00553 84 KRGSA--KSITAILPY 97 (332)
T ss_pred HHcCC--CeEEEEeec
Confidence 99998 789888754
No 215
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=42.26 E-value=1.4e+02 Score=27.38 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022183 184 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 263 (301)
Q Consensus 184 ~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~ 263 (301)
+.++|.|++.-.+. .....| ...+-+.||. .++.+.++.|++.|+ .++++-.-...+.-..+.+
T Consensus 139 G~kIgviG~~~~~~-----~~~~~~----~~~~~~~d~~----~~~~~~v~~lr~~~~---D~II~l~H~G~~~d~~la~ 202 (281)
T cd07409 139 GEKIGIIGYTTPDT-----TELSSP----GGKVKFLDEI----EAAQKEADKLKAQGV---NKIIALSHSGYEVDKEIAR 202 (281)
T ss_pred CEEEEEEEEecCcc-----cccccC----CCceEECCHH----HHHHHHHHHHHhcCC---CEEEEEeccCchhHHHHHH
Confidence 46788888864321 111112 1345566764 567788999998887 3554444445555567888
Q ss_pred hCCCcEEEEEe
Q 022183 264 RFPSLKIVTSE 274 (301)
Q Consensus 264 ~~p~v~i~t~~ 274 (301)
++|.+.++.+.
T Consensus 203 ~~~giD~Iigg 213 (281)
T cd07409 203 KVPGVDVIVGG 213 (281)
T ss_pred cCCCCcEEEeC
Confidence 99998866655
No 216
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=42.19 E-value=1.2e+02 Score=22.47 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=36.0
Q ss_pred EEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE-EEeC-----H---HHHHHHHHhCCCcEEEEEeecC
Q 022183 215 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-LISA-----P---EGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 215 ~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~-~vas-----~---~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
..++.| .-.+-.++.++++.|++.-.. ++++++. ...- . ..+.++.+.+.+. +++...++
T Consensus 14 ~~vi~D-~ahNp~s~~a~l~~l~~~~~~-~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~ 82 (91)
T PF02875_consen 14 PTVIDD-YAHNPDSIRALLEALKELYPK-GRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNP 82 (91)
T ss_dssp EEEEEE-T--SHHHHHHHHHHHHHHCTT-SEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBT
T ss_pred cEEEEE-CCCCHHHHHHHHHHHHHhccC-CcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCC
Confidence 455556 999999999999999987433 3444443 3322 1 3566777676666 55544443
No 217
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=41.72 E-value=80 Score=26.01 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=34.7
Q ss_pred EEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhccccccccc-EeecCCCCCchhHHHHHHHH
Q 022183 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYAD-VIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~AD-iii~~~~~~~~~~~~i~~~i 77 (301)
-||+++|.++++.|--.|.- .-.+.+.+-.+|.... .|....++ ++|+..+.-....+.+.+++
T Consensus 97 ~i~l~~~~e~~~~R~~~R~~--~~~~~~~i~~~~~~~~--------~~~~~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 97 FIYLSGDKDVILERMKARKG--HFMKADMLESQFAALE--------EPLADETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred EEEEeCCHHHHHHHHHhccC--CCCCHHHHHHHHHHhC--------CCCCCCCceEEEECCCCHHHHHHHHHHHH
Confidence 38999999998887766641 1223455555555433 34333333 56665444333344444443
No 218
>PLN02757 sirohydrochlorine ferrochelatase
Probab=40.61 E-value=63 Score=27.36 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEEEeC---------HHHHHHHHHhCCCcEEEEE
Q 022183 228 SANQAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 228 t~~~ai~~L~~~g~~~~~I~~~~~vas---------~~gl~~l~~~~p~v~i~t~ 273 (301)
|+..+++.+.+.|+ ++|+++=++-+ |+-++++.++||+++|+.+
T Consensus 59 sl~eal~~l~~~g~--~~vvVvP~FL~~G~H~~~DIp~~v~~~~~~~p~~~i~~~ 111 (154)
T PLN02757 59 SIKDAFGRCVEQGA--SRVIVSPFFLSPGRHWQEDIPALTAEAAKEHPGVKYLVT 111 (154)
T ss_pred CHHHHHHHHHHCCC--CEEEEEEhhhcCCcchHhHHHHHHHHHHHHCCCcEEEEC
Confidence 55567777777776 56666554322 4456667777888777654
No 219
>PRK00279 adk adenylate kinase; Reviewed
Probab=40.09 E-value=55 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.8
Q ss_pred CeEEEEeCCchhHHHHHhhhc
Q 022183 2 NMKIFVDTDADVRLARRIRRD 22 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~RD 22 (301)
|..||++++.++++.|-..|-
T Consensus 108 ~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 108 DAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CEEEEEECCHHHHHHHHhCCc
Confidence 678999999999888877773
No 220
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=39.09 E-value=2.5e+02 Score=26.99 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=38.2
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccch--hHhhcccccccccEeecCCC---CCchhHHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPA--FDDFVLPSKKYADVIIPRGG---DNHVAIDLIVQHI 77 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~--~~~~i~P~~~~ADiii~~~~---~~~~~~~~i~~~i 77 (301)
+.||+++|.++++.|.-.|+ +..+-+-+-..+.++-.|. ...|-.| .+.++.+. ++...++.++..+
T Consensus 157 ~~V~ld~ple~~l~RN~~R~---~~v~devie~m~~r~E~P~~~~nrWd~p-----l~~v~~~~~~~~~~~~~~~~~~~~ 228 (340)
T TIGR03575 157 CQLFLDCPVESCLLRNKQRP---VPLPDETIQLMGRKIEKPNPEKNAWEHN-----SLVIQSSACISEDSLEVTDLLNTA 228 (340)
T ss_pred EEEEEeCCHHHHHHHHhcCC---CCCCHHHHHHHHHHhcCCCCCCCCCCCC-----eEEEecCccccccchhHHHHHHHH
Confidence 56999999999999998885 3344444444444444454 2334333 35665532 2334455554444
No 221
>PRK00889 adenylylsulfate kinase; Provisional
Probab=39.08 E-value=8.7 Score=32.47 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.1
Q ss_pred EEEEeCCchhHHHHH
Q 022183 4 KIFVDTDADVRLARR 18 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rr 18 (301)
-||+++|.++...|.
T Consensus 103 ~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 103 EVFVDAPLEVCEQRD 117 (175)
T ss_pred EEEEcCCHHHHHHhC
Confidence 589999999777774
No 222
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=38.86 E-value=67 Score=30.08 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=37.7
Q ss_pred CCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCC
Q 022183 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPS 267 (301)
Q Consensus 207 lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~ 267 (301)
.|.+.++++|+|+ ..||+..+++-.|++.|+ ++|.+++= +.+-.+++.+.|++
T Consensus 120 ~~~~~~~~~vlil----GAGGAarAv~~aL~~~g~--~~i~V~NR--t~~ra~~La~~~~~ 172 (283)
T COG0169 120 LPVDVTGKRVLIL----GAGGAARAVAFALAEAGA--KRITVVNR--TRERAEELADLFGE 172 (283)
T ss_pred CCcccCCCEEEEE----CCcHHHHHHHHHHHHcCC--CEEEEEeC--CHHHHHHHHHHhhh
Confidence 4446678888875 589999999999999999 67877763 23334555555553
No 223
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=38.84 E-value=27 Score=29.75 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=28.8
Q ss_pred HhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCC
Q 022183 18 RIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGD 65 (301)
Q Consensus 18 ri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~ 65 (301)
|++|-...+|.+.+.+.+.+...... ++.+..||+||.|.++
T Consensus 135 ri~Rl~~Rd~~s~~~~~~r~~~Q~~~------~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 135 QIERLMKRDGLSEEEAEARIASQMPL------EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCCH------HHHHHhCCEEEECcCC
Confidence 44444433488999999988874332 2467899999998654
No 224
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=38.54 E-value=23 Score=33.12 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCeEEEEeCCchhHHHHHhhhccc
Q 022183 1 MNMKIFVDTDADVRLARRIRRDTV 24 (301)
Q Consensus 1 ~d~~ifvd~~~d~rl~Rri~RD~~ 24 (301)
||++||||+|.+.--.|-+.|-..
T Consensus 211 fDfSIyvDa~~~~le~wyi~Rfl~ 234 (283)
T COG1072 211 FDFSIYVDADEELLEERYIERFLK 234 (283)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHh
Confidence 699999999999998888888664
No 225
>PRK09375 quinolinate synthetase; Provisional
Probab=37.94 E-value=82 Score=30.11 Aligned_cols=101 Identities=13% Similarity=0.215 Sum_probs=56.2
Q ss_pred cceeEEEecccchHHHH--------HHHHhccCCeeeeEEEEecCCC---C-cee-----EeecCCCCCCCcEEEEEccc
Q 022183 160 KKLCGVSIVRSGESMEN--------ALRACCKGIKIGKILIHRDGDN---G-KQL-----IYEKLPNDISERHVLLLDPV 222 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~--------~l~~~~p~a~~G~i~i~Rd~~~---~-~~~-----~y~~lP~~i~~~~Vil~Dp~ 222 (301)
++.+++|=++||-+|++ .+++-.|++.+ ..+-|..- . ..+ ...+.=..+.....||+=|.
T Consensus 89 ~k~VllP~~~AgC~mAd~~~~~~i~~lk~~~p~a~v---VaYvNssaeVKA~aD~~cTSSnAl~iv~~~~~~~~IlF~PD 165 (319)
T PRK09375 89 EKTVLLPDLEAGCSLADMCPAEEFRAFKEAHPDATV---VTYVNTSAAVKARADIVCTSSNAVKIVEALPQGKKILFLPD 165 (319)
T ss_pred CCeEECCCCCCCCcccccCCHHHHHHHHHHCCCCEE---EEEeCCCHHHHHhCCeEEeCHHHHHHHhccCCCCeEEEeCc
Confidence 67788999999999973 35666665533 33322210 0 001 01111112222233455555
Q ss_pred ccchHHHHHHHHHHHHcCCCCccEEEEE---E---EeCHHHHHHHHHhCCCcEEEE
Q 022183 223 LATGNSANQAIQLLIEKGVPESHIIFLN---L---ISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 223 laTG~t~~~ai~~L~~~g~~~~~I~~~~---~---vas~~gl~~l~~~~p~v~i~t 272 (301)
=.=|.++.. + +++++++-. . -.+++-++++.++||+..|++
T Consensus 166 ~~Lg~~v~~----l-----~~k~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~ 212 (319)
T PRK09375 166 QHLGRYVAK----Q-----TGADIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLV 212 (319)
T ss_pred hHHHHHHHH----c-----CCCEEEccCCcchhccCcCHHHHHHHHHHCcCCeEEE
Confidence 555666532 1 335554432 2 267899999999999988876
No 226
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.75 E-value=2.2e+02 Score=26.87 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc--hH--HHHHHHHHHHHcCCCCccEEEEEEE
Q 022183 184 GIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLNLI 252 (301)
Q Consensus 184 ~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT--G~--t~~~ai~~L~~~g~~~~~I~~~~~v 252 (301)
+.+.|.+-..+=.. ...|.++++++.|++|+++-.+... -. -+...++.+++.|+ ++|.++.+-
T Consensus 10 ~~~l~~~~~~~F~D---GE~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a--~~i~~ViPY 77 (304)
T PRK03092 10 GVEVTPTTAYDFAN---GEIYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASA--KRITVVLPF 77 (304)
T ss_pred CCceeeeEEEECCC---CCEEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCC--CeEEEEEec
Confidence 44555555543211 2468888899999999998775542 22 34667889999999 789888753
No 227
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=37.55 E-value=1.2e+02 Score=25.44 Aligned_cols=51 Identities=16% Similarity=0.356 Sum_probs=31.8
Q ss_pred CCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 211 i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
+++..+|++| +|.|.....+.|.+.. ++ +++...--+-.....+|+++|+.
T Consensus 17 I~~~~~Ifld----~GtT~~~la~~L~~~~----~l---tVvTnsl~ia~~l~~~~~~~vi~ 67 (161)
T PF00455_consen 17 IEDGDTIFLD----SGTTTLELAKYLPDKK----NL---TVVTNSLPIANELSENPNIEVIL 67 (161)
T ss_pred CCCCCEEEEE----CchHHHHHHHHhhcCC----ce---EEEECCHHHHHHHHhcCceEEEE
Confidence 5566788888 7999999999887753 23 33333333334445566666554
No 228
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=37.49 E-value=98 Score=26.03 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=32.0
Q ss_pred EEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCc-hhHHHHHHH
Q 022183 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNH-VAIDLIVQH 76 (301)
Q Consensus 4 ~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~-~~~~~i~~~ 76 (301)
-||+++|.+++..|...| |.....+... .++.+-.| ...|++|+.+.... ..++.|+++
T Consensus 114 ~v~l~~~~~~l~~R~~~R-----~~~~~~~~~~-------~~~~~~~~--~~~dl~iDts~~s~~e~a~~i~~~ 173 (175)
T cd00227 114 WVGVRCPGEVAEGRETAR-----GDRVPGQARK-------QARVVHAG--VEYDLEVDTTHKTPIECARAIAAR 173 (175)
T ss_pred EEEEECCHHHHHHHHHhc-----CCccchHHHH-------HHHHhcCC--CcceEEEECCCCCHHHHHHHHHHh
Confidence 488999998887777766 3222222221 12222122 33599999865543 234444444
No 229
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=36.49 E-value=1.4e+02 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.360 Sum_probs=35.5
Q ss_pred cEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeC------HHHHHHHHHhCCCcEEEEEe
Q 022183 214 RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSE 274 (301)
Q Consensus 214 ~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas------~~gl~~l~~~~p~v~i~t~~ 274 (301)
..++++||.-+ ...++.|++.|.... .++.+ -.|+..+.++||++.||+..
T Consensus 22 ~~~ilIDpg~~-----~~vl~~l~~~g~~l~-----~IllTH~H~DHigG~~~l~~~~~~~~V~~~~ 78 (251)
T PRK10241 22 GRCLIVDPGEA-----EPVLNAIAENNWQPE-----AIFLTHHHHDHVGGVKELVEKFPQIVVYGPQ 78 (251)
T ss_pred CcEEEECCCCh-----HHHHHHHHHcCCccC-----EEEeCCCCchhhccHHHHHHHCCCCEEEecc
Confidence 56888998632 356677777776432 23433 36889999999999999754
No 230
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=35.83 E-value=1.2e+02 Score=27.56 Aligned_cols=68 Identities=12% Similarity=0.192 Sum_probs=38.5
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh----------CCCcEEEEEeecCCCCCCCeeecCCCc
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR----------FPSLKIVTSEIDVALNEEFRVIPGLGE 291 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~----------~p~v~i~t~~iD~~l~~~~~ivPGlGd 291 (301)
.+.||+|+..+++.|.++... +...+.+ |+++..-+.+.+. ++.+.|+.-.-| ++|.+...+-|-|-
T Consensus 26 GLGTGSTv~~~i~~L~~~~~~-~~l~i~~-VptS~~t~~~a~~~Gipl~~l~~~~~iDiaiDGAD-evd~~lnlIKGgGg 102 (228)
T PRK13978 26 GIGTGSTMELLLPQMAQLIKE-RGYNITG-VCTSNKIAFLAKELGIKICEINDVDHIDLAIDGAD-EVDPSLNIIKGGGG 102 (228)
T ss_pred EeCchHHHHHHHHHHHHHhhc-cCccEEE-EeCcHHHHHHHHHcCCcEechhhCCceeEEEecCc-eecCCccEEecCcH
Confidence 678999999999999876532 2333333 3444443433332 223344443333 33555668888774
Q ss_pred h
Q 022183 292 F 292 (301)
Q Consensus 292 ~ 292 (301)
+
T Consensus 103 a 103 (228)
T PRK13978 103 A 103 (228)
T ss_pred H
Confidence 3
No 231
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=34.36 E-value=2.6e+02 Score=26.75 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=55.7
Q ss_pred ccchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH----HHHHHHHHHHHcCCCCc
Q 022183 169 RSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPES 244 (301)
Q Consensus 169 RaG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~----t~~~ai~~L~~~g~~~~ 244 (301)
.+...+.+.+.+.+ +.+.|...+.|=.. ...|.++++++.|+.|+|+.+.....+ -+.-.++.+++.|+ +
T Consensus 11 ~s~~~La~~ia~~l-~~~l~~~~~~rF~D---GE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~asA--~ 84 (314)
T COG0462 11 SSNPELAEKIAKRL-GIPLGKVEVKRFPD---GEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRASA--K 84 (314)
T ss_pred CCCHHHHHHHHHHh-CCCcccceeEEcCC---CcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcCC--c
Confidence 55566666666543 55566666655322 236899999999999999999888655 34556778888888 7
Q ss_pred cEEEEEEE
Q 022183 245 HIIFLNLI 252 (301)
Q Consensus 245 ~I~~~~~v 252 (301)
+|.++-+-
T Consensus 85 ~It~ViPY 92 (314)
T COG0462 85 RITAVIPY 92 (314)
T ss_pred eEEEEeec
Confidence 89888754
No 232
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=33.76 E-value=81 Score=27.47 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=17.7
Q ss_pred CeEEEEeCCchhHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~R 21 (301)
|+.||+++|.++.+.|-..|
T Consensus 105 ~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 105 DAVIELDVPDEELVERLSGR 124 (210)
T ss_pred CEEEEEECCHHHHHHHHHCC
Confidence 68899999999988887777
No 233
>PRK03839 putative kinase; Provisional
Probab=33.30 E-value=1.1e+02 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=16.0
Q ss_pred CeEEEEeCCchhHHHHHhhh
Q 022183 2 NMKIFVDTDADVRLARRIRR 21 (301)
Q Consensus 2 d~~ifvd~~~d~rl~Rri~R 21 (301)
|+.||++++.++.+.|-..|
T Consensus 81 ~~vi~L~~~~~~~~~Rl~~R 100 (180)
T PRK03839 81 DYVIVLRAHPKIIKERLKER 100 (180)
T ss_pred CEEEEEECCHHHHHHHHHHc
Confidence 68899999999987665444
No 234
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=33.09 E-value=59 Score=29.02 Aligned_cols=15 Identities=33% Similarity=0.884 Sum_probs=12.5
Q ss_pred CCCCeeecCCCchhh
Q 022183 280 NEEFRVIPGLGEFGD 294 (301)
Q Consensus 280 ~~~~~ivPGlGd~Gd 294 (301)
..++-|+||.|.|++
T Consensus 39 ~AD~liLPGVGaf~~ 53 (204)
T COG0118 39 KADKLILPGVGAFGA 53 (204)
T ss_pred hCCEEEecCCCCHHH
Confidence 466789999999876
No 235
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=32.90 E-value=27 Score=30.10 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=16.2
Q ss_pred EEEEcccccchHHHHHHHHHHH
Q 022183 216 VLLLDPVLATGNSANQAIQLLI 237 (301)
Q Consensus 216 Vil~Dp~laTG~t~~~ai~~L~ 237 (301)
-.|+|||+.||.-++.|.....
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~ 51 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGA 51 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHT
T ss_pred CEEeecCCCCCHHHHHHHHHhh
Confidence 4799999999999888865543
No 236
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.44 E-value=1.3e+02 Score=28.17 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=52.1
Q ss_pred cchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchH----HHHHHHHHHHHcCCCCcc
Q 022183 170 SGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGN----SANQAIQLLIEKGVPESH 245 (301)
Q Consensus 170 aG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~----t~~~ai~~L~~~g~~~~~ 245 (301)
+|+.-+..+++.+|+..+=+++=. ...|=..+ ++. -..++++.|+++++ +-
T Consensus 16 GGLsVlrei~~~LP~e~~iY~~D~-----------a~~PYG~k------------s~e~I~~~~~~i~~~l~~~~i--k~ 70 (269)
T COG0796 16 GGLSVLREIRRQLPDEDIIYVGDT-----------ARFPYGEK------------SEEEIRERTLEIVDFLLERGI--KA 70 (269)
T ss_pred CcHHHHHHHHHHCCCCcEEEEecC-----------CCCCCCCC------------CHHHHHHHHHHHHHHHHHcCC--CE
Confidence 577888999999999887222111 23342222 223 23467778888886 66
Q ss_pred EEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 246 IIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 246 I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
++++|==||.-.++.|+++| ++.|+-
T Consensus 71 lVIACNTASa~al~~LR~~~-~iPVvG 96 (269)
T COG0796 71 LVIACNTASAVALEDLREKF-DIPVVG 96 (269)
T ss_pred EEEecchHHHHHHHHHHHhC-CCCEEE
Confidence 78888788999999999999 555543
No 237
>PRK00865 glutamate racemase; Provisional
Probab=32.27 E-value=93 Score=28.46 Aligned_cols=86 Identities=12% Similarity=0.217 Sum_probs=47.2
Q ss_pred EEecc---cchHHHHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCC
Q 022183 165 VSIVR---SGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGV 241 (301)
Q Consensus 165 V~IlR---aG~~m~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~ 241 (301)
|.|.- +|+..++.+++.+|+..+=+++=. ...|=..+.+.- + -.-+..+++.|.+.|+
T Consensus 8 IgvfDSGiGGLtvl~~i~~~lp~~~~iY~~D~-----------~~~PYG~ks~~~------i--~~~~~~~~~~L~~~g~ 68 (261)
T PRK00865 8 IGVFDSGVGGLTVLREIRRLLPDEHIIYVGDT-----------ARFPYGEKSEEE------I--RERTLEIVEFLLEYGV 68 (261)
T ss_pred EEEEECCccHHHHHHHHHHHCCCCCEEEEecC-----------CCCCCCCCCHHH------H--HHHHHHHHHHHHhCCC
Confidence 44554 466688999999999877221111 234432222110 0 1233456677777777
Q ss_pred CCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 242 PESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 242 ~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
+-|+++|-=++.-+++.+++.+ ++.|+.
T Consensus 69 --d~iVIaCNTa~~~~l~~lr~~~-~iPvig 96 (261)
T PRK00865 69 --KMLVIACNTASAVALPDLRERY-DIPVVG 96 (261)
T ss_pred --CEEEEeCchHHHHHHHHHHHhC-CCCEEe
Confidence 3344444334445777887776 465555
No 238
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=31.51 E-value=89 Score=28.93 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 265 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~ 265 (301)
++++++|+|+ .+|++..+++..|.+.|+ ++|.+++= +++-.+++.+.+
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~--~~i~I~nR--t~~ka~~La~~~ 169 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGV--TDITVINR--NPDKLSRLVDLG 169 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCC--CeEEEEeC--CHHHHHHHHHHh
Confidence 3567888865 689999999999999998 67877652 344455565544
No 239
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=31.51 E-value=33 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.1
Q ss_pred eCHHHHHHHHHhCCCcEEEEEeecCCCC
Q 022183 253 SAPEGIHCVCKRFPSLKIVTSEIDVALN 280 (301)
Q Consensus 253 as~~gl~~l~~~~p~v~i~t~~iD~~l~ 280 (301)
.+++-++++.++||+..|++ .|+..
T Consensus 172 f~~~~i~~~r~~~P~a~vlv---HPEC~ 196 (296)
T PF02445_consen 172 FTPEDIEKAREKHPDAKVLV---HPECP 196 (296)
T ss_dssp --HHHHHHHHCCSTTSEEEE----TTS-
T ss_pred cCHHHHHHHHHHCcCCEEEE---CCCCC
Confidence 56888999999999999876 56654
No 240
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=31.50 E-value=3.3e+02 Score=25.60 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=46.5
Q ss_pred HHHHHHhccCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccc--hH--HHHHHHHHHHHcCCCCccEEEEE
Q 022183 175 ENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLAT--GN--SANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 175 ~~~l~~~~p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laT--G~--t~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
++.+.+.+ +.+.|.+.++|=.. ...|.+++.++.|+.|+|+-++... -. -+...++.+++.|+ ++|.++.
T Consensus 4 A~~ia~~l-g~~l~~~~~~~Fpd---GE~~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a--~~i~~Vi 77 (302)
T PLN02369 4 SQEIACYL-GLELGKITIKRFAD---GEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASA--KRITAVI 77 (302)
T ss_pred HHHHHHHh-CCceeeeEEEECCC---CCEEEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCC--CeEEEEe
Confidence 33444432 45566555544211 2357788899999999999886532 12 34567788999998 7888877
Q ss_pred EE
Q 022183 251 LI 252 (301)
Q Consensus 251 ~v 252 (301)
+.
T Consensus 78 PY 79 (302)
T PLN02369 78 PY 79 (302)
T ss_pred ec
Confidence 54
No 241
>PLN02384 ribose-5-phosphate isomerase
Probab=31.24 E-value=1.1e+02 Score=28.56 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEE-EEEEEeCHHHHHHHHH---------hCCCcEEEEEeecCCCCCCCeeecCCCc
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHII-FLNLISAPEGIHCVCK---------RFPSLKIVTSEIDVALNEEFRVIPGLGE 291 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~-~~~~vas~~gl~~l~~---------~~p~v~i~t~~iD~~l~~~~~ivPGlGd 291 (301)
.|.||+|+..+++.|-++... ..+. +.++-.|.+.-....+ .++.+.|+.-.-| ++|.+...+-|-|-
T Consensus 54 GLGTGSTv~~~I~~La~r~~~-~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGAD-EId~~lnlIKGGGg 131 (264)
T PLN02384 54 GLGTGSTAKHAVDRIGELLRQ-GKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGAD-EVDPNLNLVKGRGG 131 (264)
T ss_pred EecchHHHHHHHHHHHHhhhh-ccccceEEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCc-eeCCCCCEEEeCcH
Confidence 688999999999999876543 3333 3333344332222222 2333444443333 33555668888773
No 242
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=31.18 E-value=60 Score=33.44 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=34.8
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCC-chhHHHHHHHHh
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDN-HVAIDLIVQHIH 78 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~-~~~~~~i~~~i~ 78 (301)
+.||+++|.+++..| +.|......+ .+. +.+....+.| |..| +.||++|+....+ ...++.|+++++
T Consensus 494 ivV~L~~p~e~l~~R-~rr~Ll~~~~-~~~-i~~l~~~R~~----yy~p--~~Adl~IDt~~~s~~eiv~~Il~~L~ 561 (568)
T PRK05537 494 IEVHVATPLEVCEQR-DRKGLYAKAR-EGK-IKGFTGISDP----YEPP--ANPELVIDTTNVTPDECAHKILLYLE 561 (568)
T ss_pred EEEEEcCCHHHHHHh-ccccccccch-hch-hhcccccccc----ccCC--CCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 368999999977655 4444332222 222 3332222333 2223 3699999975433 233445555544
No 243
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=31.00 E-value=92 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=25.6
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCHHHHHHHHHhhc
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFV 41 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~~~v~~~~~~~~ 41 (301)
.-||+++|.++...|-..|+-. .++.+.+..++..+-
T Consensus 100 ~~v~l~~~~~~~~~R~~~R~~~--~~~~~~~~~~~~~~~ 136 (150)
T cd02021 100 RFVHLDGPREVLAERLAARKGH--FMPADLLDSQFETLE 136 (150)
T ss_pred EEEEEECCHHHHHHHHHhcccC--CCCHHHHHHHHHHhc
Confidence 3689999999998888888643 344555666655433
No 244
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=30.65 E-value=3.4e+02 Score=27.19 Aligned_cols=63 Identities=21% Similarity=0.320 Sum_probs=49.4
Q ss_pred CcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE---EEeCHHHHHHHHHhCC----CcEEEEEeecC
Q 022183 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN---LISAPEGIHCVCKRFP----SLKIVTSEIDV 277 (301)
Q Consensus 213 ~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~---~vas~~gl~~l~~~~p----~v~i~t~~iD~ 277 (301)
+-..++=+..+.||..+..|...|.+-.- ..+.+++ ++-+.+-|+.+.+.++ .+.|.|+.++.
T Consensus 68 ~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~--g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d 137 (460)
T COG1207 68 DVEFVLQEEQLGTGHAVLQALPALADDYD--GDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD 137 (460)
T ss_pred CceEEEecccCChHHHHHhhhhhhhcCCC--CcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC
Confidence 34678888899999999999999954221 2466666 7899999999999886 37888888765
No 245
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=30.54 E-value=98 Score=26.19 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=12.9
Q ss_pred eEEEEeCCchhHHHHH
Q 022183 3 MKIFVDTDADVRLARR 18 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rr 18 (301)
+.||+++|.+++..|.
T Consensus 118 ~~v~l~~~~e~~~~R~ 133 (184)
T TIGR00455 118 IEVFVDCPLEVCEQRD 133 (184)
T ss_pred EEEEEeCCHHHHHHhC
Confidence 3589999999887773
No 246
>PLN02962 hydroxyacylglutathione hydrolase
Probab=30.53 E-value=4.2e+02 Score=24.13 Aligned_cols=57 Identities=23% Similarity=0.436 Sum_probs=37.8
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeC------HHHHHHHHHhCCCcEEEEEeec
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSEID 276 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas------~~gl~~l~~~~p~v~i~t~~iD 276 (301)
.++..+|+||.-.... ..++.|++.|.. | ..++.+ -.|...|.+++|++.+|....+
T Consensus 34 ~~~~avlIDP~~~~~~---~~l~~l~~~g~~---i--~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~ 96 (251)
T PLN02962 34 PDKPALLIDPVDKTVD---RDLSLVKELGLK---L--IYAMNTHVHADHVTGTGLLKTKLPGVKSIISKAS 96 (251)
T ss_pred CCCEEEEECCCCCcHH---HHHHHHHHCCCe---e--EEEEcCCCCchhHHHHHHHHHHCCCCeEEecccc
Confidence 4578999999532223 345677777863 3 344433 4678888888999998876543
No 247
>PHA01735 hypothetical protein
Probab=30.25 E-value=82 Score=23.27 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=30.0
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCc
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 268 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v 268 (301)
.=||-..+.+|++.||+.++. .+.....-+.++....|++
T Consensus 28 geATtaDL~AA~d~Lk~NdIt-------gv~~~gspl~~La~~~P~l 67 (76)
T PHA01735 28 GEATTADLRAACDWLKSNDIT-------GVAVDGSPLAKLAGLMPQL 67 (76)
T ss_pred CcccHHHHHHHHHHHHHCCCc-------eeeCCCCHHHHHHhcCccC
Confidence 347888999999999997763 2444555688888888864
No 248
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=29.95 E-value=1.2e+02 Score=29.01 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEE-EeecCC
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDVA 278 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas---------------~~gl~~l~~~~p~v~i~t-~~iD~~ 278 (301)
..+.+.++.+.+.|+ +.|.+..+... +.+++.+.++||++-|+| .|+|+-
T Consensus 61 d~l~~~~~~~~~~Gi--~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~Y 126 (322)
T PRK13384 61 SALADEIERLYALGI--RYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEY 126 (322)
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccC
Confidence 567888999999999 57777665433 678999999999988776 355554
No 249
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.90 E-value=1.8e+02 Score=26.30 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=41.9
Q ss_pred EEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 215 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 215 ~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
.+.++++.- +......+++.+.+.|+ ++++..-..-.+.+.++.++||+++...
T Consensus 33 ~~~~~e~~~-~~~~~~~~i~~~~~~g~---dlIi~~g~~~~~~~~~vA~~~p~~~F~~ 86 (258)
T cd06353 33 EVTYVENVP-EGADAERVLRELAAQGY---DLIFGTSFGFMDAALKVAKEYPDVKFEH 86 (258)
T ss_pred eEEEEecCC-chHhHHHHHHHHHHcCC---CEEEECchhhhHHHHHHHHHCCCCEEEE
Confidence 456666665 45788889999998887 5777777777888999999999887554
No 250
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=29.53 E-value=1.3e+02 Score=28.74 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEe-C----------------HHHHHHHHHhCCCcEEEE-EeecCCC
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLIS-A----------------PEGIHCVCKRFPSLKIVT-SEIDVAL 279 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~va-s----------------~~gl~~l~~~~p~v~i~t-~~iD~~l 279 (301)
=..+.+.++.+.+.|+ +.|.+..++. . +.+++.+.++||++.|+| .|+++--
T Consensus 53 ~d~l~~~v~~~~~~Gi--~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT 122 (320)
T cd04823 53 IDELLKEAEEAVDLGI--PAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYT 122 (320)
T ss_pred HHHHHHHHHHHHHcCC--CEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCC
Confidence 4678889999999999 6888888752 1 678999999999988776 4555543
No 251
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=28.89 E-value=59 Score=30.10 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred EEEEcccccchHHHHHHHHHHHHc
Q 022183 216 VLLLDPVLATGNSANQAIQLLIEK 239 (301)
Q Consensus 216 Vil~Dp~laTG~t~~~ai~~L~~~ 239 (301)
--|+||.+.||+-+.++.+.+++.
T Consensus 48 ~~VlDPacGsG~fL~~~~~~i~~~ 71 (311)
T PF02384_consen 48 DSVLDPACGSGGFLVAAMEYIKEK 71 (311)
T ss_dssp EEEEETT-TTSHHHHHHHHHHHTC
T ss_pred ceeechhhhHHHHHHHHHHhhccc
Confidence 346999999999999999988653
No 252
>PRK11524 putative methyltransferase; Provisional
Probab=28.83 E-value=40 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=27.1
Q ss_pred EEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh
Q 022183 215 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 264 (301)
Q Consensus 215 ~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~ 264 (301)
.=+|+||...||.|+.+|.+. |. .++++=..++-++...++
T Consensus 209 GD~VLDPF~GSGTT~~AA~~l----gR-----~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKAS----GR-----KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHc----CC-----CEEEEeCCHHHHHHHHHH
Confidence 345899999999999988774 32 334555555555544443
No 253
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=28.79 E-value=2.7e+02 Score=21.38 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=36.4
Q ss_pred CcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeC------HHHHHHHHHhCCCcEEEEEeecC
Q 022183 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA------PEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 213 ~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas------~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
|..|.++|+.... ....+.+++.++ +++.++...+ .+=++.+.+..|++.++.+....
T Consensus 28 G~~v~~~d~~~~~----~~l~~~~~~~~p---d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 28 GHEVDILDANVPP----EELVEALRAERP---DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp TBEEEEEESSB-H----HHHHHHHHHTTC---SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred CCeEEEECCCCCH----HHHHHHHhcCCC---cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 6678888877643 455666777765 5777776322 22233455568898888887543
No 254
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=28.69 E-value=50 Score=27.65 Aligned_cols=72 Identities=24% Similarity=0.409 Sum_probs=52.9
Q ss_pred EEEEEcccccchH------------------HHHHHHHHHHHcCCCCccEEEEE-EEeCHHHHHHHHHhCCCcEEEEEee
Q 022183 215 HVLLLDPVLATGN------------------SANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSEI 275 (301)
Q Consensus 215 ~Vil~Dp~laTG~------------------t~~~ai~~L~~~g~~~~~I~~~~-~vas~~gl~~l~~~~p~v~i~t~~i 275 (301)
.++=+||.+.||- +....++.+.++|.| +++++ +--.|+.+++|.+.| +..+|+-.=
T Consensus 33 lIVGiDPG~ttgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~P---viVAtDV~p~P~~V~Kia~~f-~A~ly~P~~ 108 (138)
T PF04312_consen 33 LIVGIDPGTTTGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKP---VIVATDVSPPPETVKKIARSF-NAVLYTPER 108 (138)
T ss_pred EEEEECCCceeEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCE---EEEEecCCCCcHHHHHHHHHh-CCcccCCCC
Confidence 4555777777764 456789999999986 77777 556799999999999 778888765
Q ss_pred cCCCCCCCeeecCCC
Q 022183 276 DVALNEEFRVIPGLG 290 (301)
Q Consensus 276 D~~l~~~~~ivPGlG 290 (301)
|--.+++..+.-+.|
T Consensus 109 dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 109 DLSVEEKQELAREYS 123 (138)
T ss_pred cCCHHHHHHHHHhhC
Confidence 555556666655444
No 255
>PRK13699 putative methylase; Provisional
Probab=27.75 E-value=44 Score=30.07 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.1
Q ss_pred EEEcccccchHHHHHHHHH
Q 022183 217 LLLDPVLATGNSANQAIQL 235 (301)
Q Consensus 217 il~Dp~laTG~t~~~ai~~ 235 (301)
+++||...||.|+.+|.+.
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~ 184 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS 184 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc
Confidence 7999999999999998863
No 256
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=27.44 E-value=1.2e+02 Score=22.46 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=23.9
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEE
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~ 249 (301)
+++.|++++ .+|.....+...|+..|. +++.++
T Consensus 55 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~--~~v~~l 87 (96)
T cd01529 55 RATRYVLTC---DGSLLARFAAQELLALGG--KPVALL 87 (96)
T ss_pred CCCCEEEEe---CChHHHHHHHHHHHHcCC--CCEEEe
Confidence 456788876 477777788888999998 466443
No 257
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=27.38 E-value=87 Score=23.04 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEE
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHII 247 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~ 247 (301)
+++.++++.. +|.....+...|+..|. .++.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~--~~v~ 85 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGF--TDVR 85 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCC--ceEE
Confidence 4677888776 88888899999999998 4554
No 258
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=27.11 E-value=2.1e+02 Score=27.40 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEe-----------------CHHHHHHHHHhCCCcEEEE-EeecCC
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLIS-----------------APEGIHCVCKRFPSLKIVT-SEIDVA 278 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~va-----------------s~~gl~~l~~~~p~v~i~t-~~iD~~ 278 (301)
=..+.+.++.+.+.|+ +.|.+..++. -+.+++.|.++||++.|+| .|+|+-
T Consensus 56 id~l~~~v~~~~~~GI--~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~Y 124 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGI--RAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEY 124 (324)
T ss_dssp HHHHHHHHHHHHHTT----EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTT
T ss_pred HHHHHHHHHHHHHCCC--CEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3678889999999999 6888888751 1567899999999988777 455554
No 259
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=27.10 E-value=91 Score=29.52 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHhhccchhHhhcccccccccEeecCCCCCchhHHHHHHHHhhhccccccccCCCceeeccchHHHHHHh
Q 022183 27 GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMH 106 (301)
Q Consensus 27 g~~~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~~~~~~~~~~~~i~~~i~~~l~~~~l~~~~~~v~vl~~~~~~~~~l 106 (301)
|.....++.+|+...||....--.+ -|.++++.......-..+-..|+.....-++. ..-+-|++.|+. +.|+|
T Consensus 184 g~~A~~~l~~Yl~~~R~~l~~~~~~----~~~LF~n~~g~~ltrq~~w~~lk~~a~~Agi~-~~isPH~LRHsF-ATHLL 257 (300)
T COG4974 184 GEEAVEALEKYLEEARPKLLKGKSS----TDALFPNQRGGGLTRQGFWKRLKDYAERAGID-KKISPHTLRHSF-ATHLL 257 (300)
T ss_pred hHHHHHHHHHHHHHhhHHHhccCCC----CCeeeecCCCCCCCHHHHHHHHHHHHHHhCCC-CCcCchhhHHHH-HHHHH
Confidence 6778889999999899876543211 59999986666544445555555544544554 334567888874 66765
No 260
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=26.83 E-value=1.3e+02 Score=21.39 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=24.4
Q ss_pred CCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEE
Q 022183 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249 (301)
Q Consensus 212 ~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~ 249 (301)
+++.|++++.- |.....+...|++.|. .++.++
T Consensus 49 ~~~~vv~~c~~---~~~a~~~~~~l~~~G~--~~v~~l 81 (89)
T cd00158 49 KDKPIVVYCRS---GNRSARAAKLLRKAGG--TNVYNL 81 (89)
T ss_pred CCCeEEEEeCC---CchHHHHHHHHHHhCc--ccEEEe
Confidence 45777777755 7788889999999997 455543
No 261
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=26.80 E-value=1.5e+02 Score=28.29 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC------------------HHHHHHHHHhCCCcEEEE-EeecCC
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISA------------------PEGIHCVCKRFPSLKIVT-SEIDVA 278 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas------------------~~gl~~l~~~~p~v~i~t-~~iD~~ 278 (301)
..+...++.+.+.|+ +.|.+..+... +.+++.+.++||++-|+| .|+++-
T Consensus 51 d~l~~~~~~~~~~Gi--~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~Y 119 (320)
T cd04824 51 NRLEEFLRPLVAKGL--RSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEY 119 (320)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCCccccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 567888899999999 67888777521 678999999999988776 455554
No 262
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=26.39 E-value=79 Score=23.50 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=23.5
Q ss_pred HHHHHhhhhhcCCCChhhhHhhHHHHHHH
Q 022183 101 QIRGMHTLIRDRGISKHDFVFYSDRLIRL 129 (301)
Q Consensus 101 ~~~~~lt~LRd~~T~~~~Fr~~~~rl~~l 129 (301)
.++|+...+|+.+.+.++|+.+++-|.+.
T Consensus 11 lv~~lh~~i~e~~lT~~E~~~av~~L~~~ 39 (74)
T PF04444_consen 11 LVRHLHDFIREVDLTEDEWWAAVDFLNRV 39 (74)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999988776654
No 263
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=26.28 E-value=40 Score=31.01 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=28.2
Q ss_pred CCceeeccchHHHHHHhhhhhcCCCChhhhHhhHH
Q 022183 90 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSD 124 (301)
Q Consensus 90 ~~~v~vl~~~~~~~~~lt~LRd~~T~~~~Fr~~~~ 124 (301)
.-.+|..+..| +--++.++|..+|+...|.+..+
T Consensus 150 f~GlHFfNPvP-vMKLvEVir~~~TS~eTf~~l~~ 183 (298)
T KOG2304|consen 150 FAGLHFFNPVP-VMKLVEVIRTDDTSDETFNALVD 183 (298)
T ss_pred hceeeccCCch-hHHHhhhhcCCCCCHHHHHHHHH
Confidence 34689998877 88899999999999999987543
No 264
>PLN02199 shikimate kinase
Probab=26.27 E-value=2.2e+02 Score=27.05 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=28.7
Q ss_pred eEEEEeCCchhHHHHHhhhc-cccC----CCC-------HHHHHHHHHhhccchhHhhcccccccccEeec
Q 022183 3 MKIFVDTDADVRLARRIRRD-TVER----GRD-------VDSVLEQYAKFVKPAFDDFVLPSKKYADVIIP 61 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD-~~er----g~~-------~~~v~~~~~~~~~p~~~~~i~P~~~~ADiii~ 61 (301)
..||+++|.+. +.+|+.++ ...| +.+ .+.+.+-| ..++|.|. + ||++|+
T Consensus 197 ~vV~Ldas~E~-l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~-~~R~plY~-------~-Ad~~V~ 257 (303)
T PLN02199 197 ISIWLDVPLEA-LAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIW-DERGEAYT-------N-ANARVS 257 (303)
T ss_pred eEEEEECCHHH-HHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHH-HHHHHHHH-------h-CCEEEe
Confidence 57999999885 55566652 1223 112 23333344 44777665 2 899987
No 265
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=26.20 E-value=1.4e+02 Score=29.81 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=35.8
Q ss_pred EEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEE-----EeCHHHHHHHHHhCCCcEEEEEeecC
Q 022183 215 HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL-----ISAPEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 215 ~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~-----vas~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
.-++++.-+.++.....-++.|.+.|+ +++.+.. ....+-++++.+.||++.|+++.+..
T Consensus 211 g~l~V~aav~~~~~~~~r~~~L~~aG~---d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t 275 (450)
T TIGR01302 211 GRLIVGAAVGTREFDKERAEALVKAGV---DVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVAT 275 (450)
T ss_pred CCEEEEEEecCchhHHHHHHHHHHhCC---CEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 346677666665544455556777776 3444433 22344577777777887777765533
No 266
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.08 E-value=1e+02 Score=28.16 Aligned_cols=64 Identities=28% Similarity=0.419 Sum_probs=41.1
Q ss_pred eEEEEeCCchhHHHHHhhhccccCCCCH-HHHHHHHHhhccchhHhhcccccc----cccEeecCCCCCchhHHHHHHHH
Q 022183 3 MKIFVDTDADVRLARRIRRDTVERGRDV-DSVLEQYAKFVKPAFDDFVLPSKK----YADVIIPRGGDNHVAIDLIVQHI 77 (301)
Q Consensus 3 ~~ifvd~~~d~rl~Rri~RD~~erg~~~-~~v~~~~~~~~~p~~~~~i~P~~~----~ADiii~~~~~~~~~~~~i~~~i 77 (301)
+-||+-|+.|+|+.|. .+||... ++|++| .|.+|-+|-.. .+=++|+.......-++.+-..+
T Consensus 104 ciIyl~~plDtc~rrN-----~ergepip~Evl~q-------ly~RfEePn~~~rWDspll~id~~d~~t~~IDfiesvl 171 (261)
T COG4088 104 CIIYLRTPLDTCLRRN-----RERGEPIPEEVLRQ-------LYDRFEEPNPDRRWDSPLLVIDDSDVSTEVIDFIESVL 171 (261)
T ss_pred EEEEEccCHHHHHHhh-----ccCCCCCCHHHHHH-------HHHhhcCCCCCccccCceEEEecccccccchhHHHHHH
Confidence 4699999999999887 4666654 456655 57777777654 35567765333344455554444
Q ss_pred h
Q 022183 78 H 78 (301)
Q Consensus 78 ~ 78 (301)
+
T Consensus 172 ~ 172 (261)
T COG4088 172 R 172 (261)
T ss_pred H
Confidence 3
No 267
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=26.08 E-value=2.3e+02 Score=24.23 Aligned_cols=50 Identities=10% Similarity=0.232 Sum_probs=31.7
Q ss_pred CcEEEEEcccccch-HHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022183 213 ERHVLLLDPVLATG-NSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 265 (301)
Q Consensus 213 ~~~Vil~Dp~laTG-~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~ 265 (301)
.+.+||+++.-..+ ..+..+.+.+++.|+ +|.++++=...+-|+++.++-
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I---~v~~IgiG~~~~~L~~ia~~t 158 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENI---RVSVIGLSAEMHICKEICKAT 158 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCc---EEEEEEechHHHHHHHHHHHh
Confidence 34677777654332 345677888998887 477777644445577776654
No 268
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=26.03 E-value=1.6e+02 Score=28.13 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEE-EeecCC
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDVA 278 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~vas---------------~~gl~~l~~~~p~v~i~t-~~iD~~ 278 (301)
=..+.+.++.+.+.|+ +.|.+..+-.. +.+++.+.++||++-|+| .|+|+-
T Consensus 50 ~d~l~~~~~~~~~~Gi--~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~Y 116 (314)
T cd00384 50 VDSLVEEAEELADLGI--RAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEY 116 (314)
T ss_pred HHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 3678889999999999 57777776322 678999999999988776 455654
No 269
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=25.58 E-value=2e+02 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
-+++..+|++| +|.|.....+.|.+. + +++|...-.+-......|+++++.
T Consensus 90 lI~~gd~Ifld----~GtT~~~l~~~L~~~-----~---ltVvTNs~~ia~~l~~~~~~~vil 140 (240)
T PRK10411 90 WIEEGMVIALD----ASSTCWYLARQLPDI-----N---IQVFTNSHPICQELGKRERIQLIS 140 (240)
T ss_pred hCCCCCEEEEc----CcHHHHHHHHhhCCC-----C---eEEEeCCHHHHHHHhcCCCCEEEE
Confidence 35677788888 788888888888532 2 455544444444344568877654
No 270
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=24.48 E-value=2.7e+02 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEE
Q 022183 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNL 251 (301)
Q Consensus 211 i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~ 251 (301)
+++++++|+ .+||...++...|.+.|+ ++|.+++-
T Consensus 124 ~~~k~vlI~----GAGGagrAia~~La~~G~--~~V~I~~R 158 (289)
T PRK12548 124 VKGKKLTVI----GAGGAATAIQVQCALDGA--KEITIFNI 158 (289)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 567888765 468888888889999998 56777653
No 271
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=24.47 E-value=53 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCCccEEEEEEEeC---------HHHHHHHHHhCCCcEEEEE
Q 022183 231 QAIQLLIEKGVPESHIIFLNLISA---------PEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 231 ~ai~~L~~~g~~~~~I~~~~~vas---------~~gl~~l~~~~p~v~i~t~ 273 (301)
.+++.|.+.|+ ++|+++=++-+ |+-++.+.+.+|++++..+
T Consensus 41 ~~l~~l~~~g~--~~ivvvP~fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~ 90 (105)
T PF01903_consen 41 EALERLVAQGA--RRIVVVPYFLFPGYHVKRDIPEALAEARERHPGIEVRVA 90 (105)
T ss_dssp HCCHHHHCCTC--SEEEEEEESSSSSHHHHCHHHHHHCHHHHCSTTEEEEE-
T ss_pred HHHHHHHHcCC--CeEEEEeeeecCccchHhHHHHHHHHHHhhCCceEEEEC
Confidence 34455555565 45555544322 3445556777777776554
No 272
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.28 E-value=1.9e+02 Score=27.77 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCCCccEEEEEEEeC---------------HHHHHHHHHhCCCcEEEE-EeecCC
Q 022183 227 NSANQAIQLLIEKGVPESHIIFLNLISA---------------PEGIHCVCKRFPSLKIVT-SEIDVA 278 (301)
Q Consensus 227 ~t~~~ai~~L~~~g~~~~~I~~~~~vas---------------~~gl~~l~~~~p~v~i~t-~~iD~~ 278 (301)
..+.+.++.+.+.|+ +.|.+..+-.. +.+++.+.++||++-|+| .|+|+-
T Consensus 59 d~l~~~v~~~~~~Gi--~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~Y 124 (323)
T PRK09283 59 DLLVKEAEEAVELGI--PAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEY 124 (323)
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 467888899999999 57777666322 678999999999988777 355554
No 273
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=24.10 E-value=2.4e+02 Score=25.53 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=33.5
Q ss_pred CCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 022183 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTS 273 (301)
Q Consensus 211 i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~ 273 (301)
+++..+|++| +|.|....++.|.+. + ++++...--+-.....+|+++++..
T Consensus 91 I~~g~~Ifld----~GsT~~~la~~L~~~-----~---ltVvTnsl~ia~~l~~~~~~~v~l~ 141 (251)
T PRK13509 91 CNPGESVVIN----CGSTAFLLGRELCGK-----P---VQIITNYLPLANYLIDQEHDSVIIM 141 (251)
T ss_pred CCCCCEEEEC----CcHHHHHHHHHhCCC-----C---eEEEeCCHHHHHHHHhCCCCEEEEE
Confidence 4566788888 788888888888542 2 4555555555554455788776543
No 274
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=23.81 E-value=1.2e+02 Score=26.97 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022183 226 GNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 263 (301)
Q Consensus 226 G~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~ 263 (301)
...+..+++.++++|.+ ++|.+++.-++|..++.+..
T Consensus 192 d~~a~~~~~~l~~~g~p-~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 192 AVAAEAAVGILRQRGLT-DQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred chhhhHHHHHHHhcCCC-CCeEEEecCCCHHHHHHHHc
Confidence 45566788999999985 79999999999988888853
No 275
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.60 E-value=1.3e+02 Score=25.34 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=32.0
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHh
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKR 264 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~ 264 (301)
...+...+..|-+.|+..|+ +.| +..-..+.+|+++|.+.
T Consensus 101 l~~~~~~i~~a~~~L~~aG~--~~i-f~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 101 LPSDDANIERAKKWLKNAGV--KEI-FEVSAVTGEGIEELKDY 140 (143)
T ss_pred CccchhhHHHHHHHHHHcCC--CCe-EEEECCCCcCHHHHHHH
Confidence 33467889999999999999 567 66667789999999763
No 276
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=23.46 E-value=1.3e+02 Score=28.29 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022183 225 TGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 263 (301)
Q Consensus 225 TG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~ 263 (301)
++..+..+++.++++|.+ ++|.+++.-.+|..++.+.+
T Consensus 238 ~d~~A~ga~~al~~~g~~-~di~Vvg~~~~p~~~~~i~~ 275 (343)
T PRK10936 238 SAVAAEAAIGELRGRNLT-DKIKLVSFYLSHQVYRGLKR 275 (343)
T ss_pred CCHHHHHHHHHHHhcCCC-CCeEEEEeCCCHHHHHHHHc
Confidence 455667788999999986 79999999999999888875
No 277
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=22.83 E-value=3e+02 Score=22.58 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCCccEEEEEEEe--CHHHHHHHHH----hCCCcEEEEE
Q 022183 230 NQAIQLLIEKGVPESHIIFLNLIS--APEGIHCVCK----RFPSLKIVTS 273 (301)
Q Consensus 230 ~~ai~~L~~~g~~~~~I~~~~~va--s~~gl~~l~~----~~p~v~i~t~ 273 (301)
..++..|.++|.++..|+++.-=. -.+|.+.+.. .||..+|+.-
T Consensus 8 TEtl~aL~~~g~~i~ev~lI~T~~~~v~~~~~~l~~~l~~~~~~~~i~~i 57 (124)
T TIGR03642 8 TEAIDYLKKKGEPISDVILIYTKDPYVLSALRALKDSLLKKFYKAEVHKI 57 (124)
T ss_pred HHHHHHHHhcCCCCCeEEEEEcCCHHHHHHHHHHHHHhHHhcCCcEEEEe
Confidence 378889999999888888877321 0226665555 5555666553
No 278
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.72 E-value=1.9e+02 Score=26.55 Aligned_cols=48 Identities=29% Similarity=0.493 Sum_probs=34.5
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhC
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRF 265 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~ 265 (301)
++++++|+|+ .+|+...+++..|.+.|+ .+|.+++- +.+..+++.+.+
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~--~~V~v~~R--~~~~a~~l~~~~ 167 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGV--AEITIVNR--TVERAEELAKLF 167 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCC--CEEEEEeC--CHHHHHHHHHHh
Confidence 5678888766 579999999999999997 46766653 344455555544
No 279
>PRK00886 2-phosphosulfolactate phosphatase; Provisional
Probab=22.56 E-value=3.4e+02 Score=24.74 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=61.4
Q ss_pred cceeEEEecccchHHHHHH----HHhccCCe----------e---eeEEE-EecCCCCceeEeecCC-----CCCCCcEE
Q 022183 160 KKLCGVSIVRSGESMENAL----RACCKGIK----------I---GKILI-HRDGDNGKQLIYEKLP-----NDISERHV 216 (301)
Q Consensus 160 ~~i~~V~IlRaG~~m~~~l----~~~~p~a~----------~---G~i~i-~Rd~~~~~~~~y~~lP-----~~i~~~~V 216 (301)
+-+++|=+||+.-.+..++ ++++|-.. . +.++. .|+-.+.+.+-|.+-| ..++||++
T Consensus 20 ~~~VVIDVLRAtTti~~Al~~Ga~~V~P~~~~eeA~~~~~~~~~~~~ll~GEr~g~~i~GFd~gNSP~e~~~~~~~gk~l 99 (240)
T PRK00886 20 KTAVVIDVLRATSTIATALNNGAEAVIPFSDVEEALEKAKKWPAEKRLLGGERGGLKIEGFDLGNSPLEYTPEVVEGKRL 99 (240)
T ss_pred CeEEEEecCChHHHHHHHHHCCCCEEEEcCCHHHHHHHHhhcCCCCeEEEeccCCccCCCCCCCCCHHHHHhhccCCCEE
Confidence 3467889999988876554 44676211 1 33444 2322222333343333 34568888
Q ss_pred EEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEee
Q 022183 217 LLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEI 275 (301)
Q Consensus 217 il~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~~i 275 (301)
++--+ .|..++. ..+ +. ++|.+.|++-+..-.+.+.+..++|.|+++.=
T Consensus 100 VltTt---NGT~al~---~a~--~a--~~v~~gsl~Na~Ava~~~~~~~~~V~iV~aG~ 148 (240)
T PRK00886 100 FMTTT---NGTRALK---RVR--KA--KRILIAALINRSAVAEYLLSLNEDVWIVGSGT 148 (240)
T ss_pred EEECC---cHHHHHH---Hhh--cC--CeEEEEeehhHHHHHHHHHhcCCCEEEEeCCC
Confidence 77542 2443333 232 23 46888888877776777776656799988873
No 280
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=22.25 E-value=36 Score=25.84 Aligned_cols=15 Identities=60% Similarity=1.028 Sum_probs=9.5
Q ss_pred CCCCCCee-ecCCCch
Q 022183 278 ALNEEFRV-IPGLGEF 292 (301)
Q Consensus 278 ~l~~~~~i-vPGlGd~ 292 (301)
.|+.+..+ +||+|||
T Consensus 56 ~l~~n~lVHIpG~GDf 71 (83)
T smart00785 56 GLNANQLVHIPGLGDF 71 (83)
T ss_pred CCCCCCEEEeCCcCCe
Confidence 34444433 7999997
No 281
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.17 E-value=1.3e+02 Score=24.47 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=46.8
Q ss_pred CcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE-EEeCHHHHHHHHHhCCCcEEEEEeecC
Q 022183 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN-LISAPEGIHCVCKRFPSLKIVTSEIDV 277 (301)
Q Consensus 213 ~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~-~vas~~gl~~l~~~~p~v~i~t~~iD~ 277 (301)
...+++-+--..|...+..+.+.+.++|. ++|.+|+ -.-.+-...-+.+.+|++.++....+.
T Consensus 67 ~~~I~~e~~s~~T~ena~~~~~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~~~~~~~~p~~~ 130 (150)
T cd06259 67 AEAILLEDRSTNTYENARFSAELLRERGI--RSVLLVTSAYHMPRALLIFRKAGLDVEVVPAPTDF 130 (150)
T ss_pred HHHeeecCCCCCHHHHHHHHHHHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCCCCcEEecCcch
Confidence 45677777777899999999999999998 6777776 455566777777788875665555544
No 282
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=22.15 E-value=2.8e+02 Score=28.00 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=30.7
Q ss_pred hHHHH-HHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEE
Q 022183 226 GNSAN-QAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 270 (301)
Q Consensus 226 G~t~~-~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i 270 (301)
|.++. ..++....+|-+ +++-+++-...|+-+.++.+..|+.-|
T Consensus 162 g~~ly~~v~~~~~~~~~~-~~~g~VvGAT~p~~~~~iR~~~p~~~i 206 (477)
T PRK05500 162 ENPFYLQVVKEAKTWGTP-EQLGLEVGTTNPEVLAKIRQIAPERLI 206 (477)
T ss_pred CCcHHHHHHHHHHHhCCC-CceEEEECCCChHHHHHHHHhCCCCEE
Confidence 44444 455667778864 566666666668999999998896554
No 283
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=21.94 E-value=4e+02 Score=27.21 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=72.2
Q ss_pred Hhhhhh-cCCC-ChhhhHhhHHHHHHHHHHHHhCCCCCeeeEeeCCCCceeeeeeeccceeEEEecccchHHHHHHHHhc
Q 022183 105 MHTLIR-DRGI-SKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACC 182 (301)
Q Consensus 105 ~lt~LR-d~~T-~~~~Fr~~~~rl~~lL~~eal~~lp~~~~~V~tp~g~~~~g~~~~~~i~~V~IlRaG~~m~~~l~~~~ 182 (301)
+|..+- |..| ...+|-+-.+.|..++-+ ..+|+-...|....+....+. -.+..++- +
T Consensus 77 ~~N~~g~Da~~lGNHEFd~G~~~l~~~~~~---~~fp~l~aNv~~~~~~~~~~~--~~p~~i~~--~------------- 136 (550)
T TIGR01530 77 LMNAAGFDFFTLGNHEFDAGNEGLKEFLEP---LEIPVLSANVIPDAASILHGK--WKPSAIFE--R------------- 136 (550)
T ss_pred HHhccCCCEEEeccccccCCHHHHHHHHHh---CCCCEEEEeeecCCCcccccC--cCceEEEE--E-------------
Confidence 344444 4444 466888888887766542 346665444432211100000 11222222 1
Q ss_pred cCCeeeeEEEEecCCCCceeEeecCCCCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHH
Q 022183 183 KGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 262 (301)
Q Consensus 183 p~a~~G~i~i~Rd~~~~~~~~y~~lP~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~ 262 (301)
...++|.|++.-.+.+. ...-| ++.+-+.||. .++.+.++.|++.|+ +++++-.-..-+.-..|.
T Consensus 137 ~g~kIgiiGl~~~~~~~----~~~~~----~~~~~f~d~~----~~~~~~v~~Lk~~g~---D~II~lsH~g~~~d~~la 201 (550)
T TIGR01530 137 AGEKIAIIGLDTVKKTV----ESSSP----GKDIKFIDEI----AAAQIAANALKQQGI---NKIILLSHAGFEKNCEIA 201 (550)
T ss_pred CCeEEEEEEeecCcccc----cccCC----CCceEECCHH----HHHHHHHHHHHhCCC---CEEEEEecCCcHHHHHHH
Confidence 34589999985321111 01111 2346667764 457788999999887 344444344444446788
Q ss_pred HhCCCcEEEEEe
Q 022183 263 KRFPSLKIVTSE 274 (301)
Q Consensus 263 ~~~p~v~i~t~~ 274 (301)
++.|+|.++.+.
T Consensus 202 ~~~~~iD~IigG 213 (550)
T TIGR01530 202 QKINDIDVIVSG 213 (550)
T ss_pred hcCCCCCEEEeC
Confidence 899998765554
No 284
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=21.70 E-value=2.7e+02 Score=25.70 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEEEeec
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 276 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t~~iD 276 (301)
++.||+++++-. -||--.+..+.|.++|+ +...+.=-.-.++.+.+|++.+|.++++--..|
T Consensus 2 ~~tGKna~vtgg---agGIGl~~sk~Ll~kgi--k~~~i~~~~En~~a~akL~ai~p~~~v~F~~~D 63 (261)
T KOG4169|consen 2 DLTGKNALVTGG---AGGIGLATSKALLEKGI--KVLVIDDSEENPEAIAKLQAINPSVSVIFIKCD 63 (261)
T ss_pred cccCceEEEecC---CchhhHHHHHHHHHcCc--hheeehhhhhCHHHHHHHhccCCCceEEEEEec
Confidence 467888887643 34555566677778787 344444445668888899999998776554444
No 285
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=21.66 E-value=37 Score=25.82 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=12.8
Q ss_pred EEEeec-CCCCCCCee-ecCCCch
Q 022183 271 VTSEID-VALNEEFRV-IPGLGEF 292 (301)
Q Consensus 271 ~t~~iD-~~l~~~~~i-vPGlGd~ 292 (301)
+++.+- ..|+.+..+ +||+|||
T Consensus 50 v~GyvRG~~l~~n~lVHIpG~GDF 73 (85)
T PF08142_consen 50 VYGYVRGSPLSVNQLVHIPGVGDF 73 (85)
T ss_pred EEEEEccccccCCCEEEeCCcCCe
Confidence 334443 345555544 7999998
No 286
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=21.39 E-value=2.8e+02 Score=25.47 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v~i~t 272 (301)
-+++..+|++| +|.|....++.|.+. +++ +++...-.+-.....+|+++++.
T Consensus 103 ~I~dgd~Ifld----~GtT~~~la~~L~~~----~~l---tVvTnsl~ia~~l~~~~~~~v~l 154 (269)
T PRK09802 103 LIQPGHRVILD----SGTTTFEIARLMRKH----TDV---IAMTNGMNVANALLEAEGVELLM 154 (269)
T ss_pred hCCCCCEEEEC----CchHHHHHHHhcCcC----CCe---EEEeCCHHHHHHHHhCCCCEEEE
Confidence 35667778777 788887777777432 133 33333332333334467766543
No 287
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.35 E-value=4.3e+02 Score=22.97 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=34.0
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCCCc
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSL 268 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p~v 268 (301)
.+++++++|.-. ||+--...++.|.++|. +| +++.-.++.++.+.+..++.
T Consensus 8 ~~~~~~vlItGa---~g~iG~~~a~~L~~~g~---~V--~~~~r~~~~~~~~~~~~~~~ 58 (264)
T PRK12829 8 PLDGLRVLVTGG---ASGIGRAIAEAFAEAGA---RV--HVCDVSEAALAATAARLPGA 58 (264)
T ss_pred ccCCCEEEEeCC---CCcHHHHHHHHHHHCCC---EE--EEEeCCHHHHHHHHHHHhcC
Confidence 356788888764 56666777888888886 34 33444566777776666654
No 288
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=82 Score=27.86 Aligned_cols=46 Identities=11% Similarity=0.309 Sum_probs=32.5
Q ss_pred ecCCCCCCCc-EEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022183 205 EKLPNDISER-HVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 205 ~~lP~~i~~~-~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
..+|..++++ ++||.||=.-+-.-+.+....++-.+.+.++|++++
T Consensus 126 ~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCt 172 (217)
T KOG3350|consen 126 LDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCT 172 (217)
T ss_pred CCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEec
Confidence 3566666776 899999988777766677676766666556675554
No 289
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=21.29 E-value=1.7e+02 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEE
Q 022183 209 NDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLN 250 (301)
Q Consensus 209 ~~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~ 250 (301)
+++++++|+++ .+|.....+++.|.++|+ ++|.+++
T Consensus 170 ~~l~~k~vLvI----GaGem~~l~a~~L~~~g~--~~i~v~n 205 (338)
T PRK00676 170 QKSKKASLLFI----GYSEINRKVAYYLQRQGY--SRITFCS 205 (338)
T ss_pred CCccCCEEEEE----cccHHHHHHHHHHHHcCC--CEEEEEc
Confidence 46889999976 589999999999999998 6788777
No 290
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.28 E-value=3.1e+02 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHH
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCK 263 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~ 263 (301)
+++|++|+|+ ..|......++.|.+.|+ +|.+++.=.+ +.++.+.+
T Consensus 6 ~l~gk~vlVv----GgG~va~rk~~~Ll~~ga---~VtVvsp~~~-~~l~~l~~ 51 (205)
T TIGR01470 6 NLEGRAVLVV----GGGDVALRKARLLLKAGA---QLRVIAEELE-SELTLLAE 51 (205)
T ss_pred EcCCCeEEEE----CcCHHHHHHHHHHHHCCC---EEEEEcCCCC-HHHHHHHH
Confidence 3678888865 478888888999999997 5766654333 45666644
No 291
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=21.06 E-value=3e+02 Score=20.19 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHHHcCCCCccEEEEEEEeCHHHHHHHHHhCC
Q 022183 222 VLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFP 266 (301)
Q Consensus 222 ~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas~~gl~~l~~~~p 266 (301)
++.+|+-..+..+-|.+.|..+.+|.+++ --+++..+++.+.++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~-~r~~~~~~~~~~~~~ 47 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVS-SRSPEKAAELAKEYG 47 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEE-ESSHHHHHHHHHHCT
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeec-cCcHHHHHHHHHhhc
Confidence 45788877888888889886546665543 788999999999987
No 292
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=20.61 E-value=2.8e+02 Score=25.79 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCCcEEEEEcccccchHHHHHHHHHHHHcCCCCccEEEEEEEeC-HHHHHHHHHhCC
Q 022183 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISA-PEGIHCVCKRFP 266 (301)
Q Consensus 210 ~i~~~~Vil~Dp~laTG~t~~~ai~~L~~~g~~~~~I~~~~~vas-~~gl~~l~~~~p 266 (301)
++++++|+|+ .+||+..+++-.|...|+ ++|.+++-=.. .+..+++.+.++
T Consensus 121 ~~~~k~vlvl----GaGGaarAi~~~l~~~g~--~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVLL----GAGGASTAIGAQGAIEGL--KEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCC--CEEEEEeCCccHHHHHHHHHHHhh
Confidence 4677888754 589998888888888998 67877774221 345566665553
Done!