RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 022183
(301 letters)
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 198 bits (507), Expect = 1e-63
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 5/211 (2%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
NVYVI ++ T++RD+ +F D + RL+ LP + ++ TP G
Sbjct: 3 NVYVIDHP-LVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGP 61
Query: 152 MYTGVDFC-KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPN 209
GV KK+ V I+R+G M L ++G I I+RD + + L YEKLP
Sbjct: 62 T-EGVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPE 120
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLK 269
DI ER V++LDP+LATG SA AI LL ++G P+ +I ++L++APEGI V K P ++
Sbjct: 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPK-NIKVVSLVAAPEGIKAVEKAHPDVE 179
Query: 270 IVTSEIDVALNEEFRVIPGLGEFGDRYFGTD 300
I T+ ID LNE+ ++PGLG+ GDR FGT
Sbjct: 180 IYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 157 bits (399), Expect = 2e-47
Identities = 60/80 (75%), Positives = 70/80 (87%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++KIFVDTDADVRL RRI RD VERGRD++SV+ QY KFVKP + F+ P+K+YADVII
Sbjct: 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVII 178
Query: 61 PRGGDNHVAIDLIVQHIHTK 80
PRGGDNHVAIDLIVQHI +K
Sbjct: 179 PRGGDNHVAIDLIVQHIKSK 198
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 140 bits (355), Expect = 9e-41
Identities = 43/84 (51%), Positives = 59/84 (70%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++KIFVDT D+RL RR++RD ERGR ++SV+ QY V+P F+ PSK+YAD+II
Sbjct: 126 MDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIII 185
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQH 84
P GG N VAID++ I L ++
Sbjct: 186 PEGGKNRVAIDILKAKIRQLLEKN 209
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 133 bits (338), Expect = 3e-38
Identities = 76/209 (36%), Positives = 111/209 (53%), Gaps = 4/209 (1%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
V VI+ I+ TL+RD+ +F L RL+ L E +V TP G
Sbjct: 1 MVVVIEHPL-IKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGE 59
Query: 152 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIY-EKLPND 210
G KK+ V I+R+G M + + K+G + +R+ + K + Y KLP D
Sbjct: 60 TEGGRILGKKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPED 119
Query: 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 270
I ER V++LDP+LATG + A+ LL ++G I L++++APEGI V K P + I
Sbjct: 120 IDERTVIVLDPMLATGGTMIAALDLLKKRGAK--KIKVLSIVAAPEGIEAVEKAHPDVDI 177
Query: 271 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
T+ ID LN+ ++PGLG+ GDR FGT
Sbjct: 178 YTAAIDEKLNDNGYIVPGLGDAGDRAFGT 206
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 125 bits (318), Expect = 3e-35
Identities = 79/207 (38%), Positives = 112/207 (54%), Gaps = 29/207 (14%)
Query: 107 TLIRDRGISKHDFVFYSDRLIRLVVEHGLG---------HLPFTEKQVVTPTGSMYTGVD 157
TL+RD+ S F R L+ E LG LP E ++ TP G
Sbjct: 17 TLLRDKNTSTKRF-----R--ELLEE--LGRLLAYEATRDLPLEEVEIETPLGKTTGKRI 67
Query: 158 FCKKLCGVSIVRSGESM-ENALRACCKGI---KIGKILIHRDGDNGKQLIY-EKLPNDIS 212
KKL V I+R+G M + L+ I ++G I ++RD + + + Y KLP DI
Sbjct: 68 AGKKLVIVPILRAGLGMVDGVLKL----IPSARVGHIGLYRDEETLEPVEYYVKLPEDID 123
Query: 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272
ER V+++DP+LATG SA AI LL ++G +I L L++APEGI + + P ++I T
Sbjct: 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNIKVLCLVAAPEGIKALEEAHPDVEIYT 181
Query: 273 SEIDVALNEEFRVIPGLGEFGDRYFGT 299
+ ID LNE ++PGLG+ GDR FGT
Sbjct: 182 AAIDEKLNEHGYIVPGLGDAGDRLFGT 208
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 124 bits (312), Expect = 2e-34
Identities = 45/81 (55%), Positives = 60/81 (74%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++KIFVDT D+RL RRI RD ERGR +DSV++QY K V+P ++ FV P+K+YAD+II
Sbjct: 126 MDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLII 185
Query: 61 PRGGDNHVAIDLIVQHIHTKL 81
P GG N VAI+++ I L
Sbjct: 186 PEGGRNEVAINVLDTKIKHLL 206
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 118 bits (299), Expect = 2e-32
Identities = 50/85 (58%), Positives = 67/85 (78%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++KIFVDTDADVRL RRI+RD ERGRD++SV+EQY K V+P ++ F+ P+KKYAD+II
Sbjct: 128 MDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIII 187
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQHD 85
P GG N VA+DL+ I + L + +
Sbjct: 188 PSGGKNEVAVDLLQAKIASSLSEQN 212
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 88.6 bits (220), Expect = 4e-21
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
+++KI VD D ++ ++I+RD ERG +++V + KP + +++ P Y D+
Sbjct: 130 LDLKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSIL-RRKPDYVNYICPQFSYTDLNF 188
Query: 61 PRGGDNHVA 69
R +
Sbjct: 189 QRVPTVDTS 197
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 87.1 bits (216), Expect = 3e-20
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 7/176 (3%)
Query: 129 LVVEHGLGHLPFTEKQVVTPTGSMYTGVDFC---KKLCGVSIVRSGESMENALRACCKGI 185
L+ E LP +V TP G V+F + + V I+R+G + +
Sbjct: 70 LIYEASRDWLPTMTGEVQTPMGV--ADVEFIDPREPVAVVPILRAGLVLLEHASSVLPAT 127
Query: 186 KIGKILIHRDGDNGKQLIY-EKLPNDISERH-VLLLDPVLATGNSANQAIQLLIEKGVPE 243
K + RD + + +Y KLP+ E VL++DP+LATG + AI L+ +G
Sbjct: 128 KTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASV 187
Query: 244 SHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
I + ++AP + + ++FP L + ID +NE+ ++PGLG+ GDR FGT
Sbjct: 188 EQIRVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243
>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional.
Length = 210
Score = 69.6 bits (170), Expect = 4e-14
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M+ IFVDT D+ L RR +RD ERGR +SV+EQY V+P + +V PSK YAD+I+
Sbjct: 127 MDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIV 186
Query: 61 PRGGDNHVAIDLI 73
P DN VA+ ++
Sbjct: 187 PSWKDNSVAVGVL 199
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 58.6 bits (142), Expect = 7e-11
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 157 DFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK----QLIYEKLPNDIS 212
D + V I+R G + AL G+ + I R G + L D+
Sbjct: 12 DLLEPDVVVGILRGGLPLAAALARAL-GLPLAFIRKERKGPGRTPSEPYGLELPLGGDVK 70
Query: 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272
+ VLL+D V+ATG + AI+LL E G + L+ PEG P + +
Sbjct: 71 GKRVLLVDDVIATGGTLLAAIELLKEAGA--KVVGVAVLLDKPEGGARE-LASPGDPVYS 127
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 54.9 bits (132), Expect = 2e-08
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++ I++D DV+ A +I+RD ERG ++S+ KP FD ++ P K+YADV+I
Sbjct: 183 LDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVI 241
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 52.7 bits (127), Expect = 6e-08
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
+++D +V+ A +I+RD ERG ++ VL KP F+ ++ P K+YADV+I
Sbjct: 119 SVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKPDFEAYIDPQKQYADVVI 174
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 49.6 bits (119), Expect = 6e-07
Identities = 18/57 (31%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
K+++D +V++A +I+RD +RG + VL + +P F+ ++ P +++ADV+I
Sbjct: 128 KVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA-REPDFEAYIRPQRQWADVVI 183
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 46.3 bits (110), Expect = 3e-06
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 5 IFVDTDADVRLARRIRRDTVER-GRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRG 63
IF+DT D+ +ARRI RD E G ++ + L+ Y + +P + + + K AD+++
Sbjct: 102 IFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVL--- 158
Query: 64 GDNHVAIDLIVQHIHTKLGQ 83
D ++++ I+ I +L +
Sbjct: 159 -DGALSVEEIINQIEEELYR 177
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 34.2 bits (79), Expect = 0.022
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 192 IHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249
+ + +LP + + VL++D VL TG + A++LL + G + L
Sbjct: 65 SIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVL 122
>gnl|CDD|224976 COG2065, PyrR, Pyrimidine operon attenuation protein/uracil
phosphoribosyltransferase [Nucleotide transport and
metabolism].
Length = 179
Score = 33.4 bits (77), Expect = 0.072
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
LP DI+ + V+L+D VL TG + A+ L++ G P
Sbjct: 90 LPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAK 127
>gnl|CDD|223970 COG1040, ComFC, Predicted amidophosphoribosyltransferases [General
function prediction only].
Length = 225
Score = 33.5 bits (77), Expect = 0.077
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPE 256
++VLL+D V TG + +A +LL E G + L L APE
Sbjct: 183 EPKNVLLVDDVYTTGATLKEAAKLLREAGA--KRVFVLTLARAPE 225
>gnl|CDD|183221 PRK11595, PRK11595, DNA utilization protein GntX; Provisional.
Length = 227
Score = 32.3 bits (74), Expect = 0.19
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGV 241
+ +H+ ++D V+ TG++ + QLL+ G
Sbjct: 184 PVQGQHMAIVDDVVTTGSTVAEIAQLLLRNGA 215
>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
uracil phosphoribosyltransferase; Provisional.
Length = 176
Score = 31.3 bits (72), Expect = 0.33
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 193 HRD--GDNGKQLIYEK--LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
+RD G + +P DI + V+L+D VL TG + A+ L + G P
Sbjct: 71 YRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPAR 126
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 31.1 bits (71), Expect = 0.54
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 4 KIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFD---DFVLPSKKYADVII 60
KIF+DTD +V R +RDT G + + Y PA P K+ ADV+I
Sbjct: 150 KIFLDTDFEVSRRRGAKRDTEAFGSY-EEAEKMYLARYHPAQKLYIAEANP-KERADVVI 207
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 31.5 bits (72), Expect = 0.55
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 19 IRRDTVERGRDVDSVLEQYAKFVKPAFD 46
+ D RG DS LE YAK ++PAFD
Sbjct: 230 LEEDNNIRG---DSTLEDYAK-LRPAFD 253
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 30.1 bits (69), Expect = 0.66
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 4 KIFVDTDADVRLARRIRRDTVERGR--DVDSVLEQ-----------YAKFVKPAFDDFVL 50
KIF+ +VR A+R + +G D++ +L + Y +K A D V+
Sbjct: 86 KIFLTASPEVR-AKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVI 144
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 30.7 bits (70), Expect = 0.78
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKG 240
D+ + VL++D +++TG + AI++L E+G
Sbjct: 201 DVKGKDVLIVDDIISTGGTMATAIKILKEQG 231
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 30.2 bits (69), Expect = 0.87
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 207 LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249
L DI R VL+++ ++ +G + ++ LL E+G I L
Sbjct: 87 LDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATL 129
>gnl|CDD|112329 pfam03506, Flu_C_NS1, Influenza C non-structural protein (NS1).
The influenza C virus genome consists of seven
single-stranded RNA segments. The shortest RNA segment
encodes a 286 amino acid non-structural protein NS1.
This protein contains 6 conserved cysteines that may be
functionally important, perhaps binding to a metal ion.
Length = 162
Score = 30.1 bits (67), Expect = 0.88
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 153 YTGVDFC---KKLCGVSIVRSGESMENALRACCKGIKIGKIL 191
Y V +C KK+CG I + +E +R C + IK G ++
Sbjct: 98 YAFVLYCRNTKKICGYLIAKQVAGIETGIRKCFRCIKSGFVM 139
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like
subfamily. This group contains matrix metalloproteinases
(MMPs), serralysins, and the astacin_like family of
proteases.
Length = 165
Score = 28.6 bits (64), Expect = 2.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 106 HTLIRDRGISKHDFVFYSDRLIRLVVEHGLGH 137
++ R FV YS +R EH LGH
Sbjct: 73 GEILLARVYLYSSFVEYSGARLRNTAEHELGH 104
>gnl|CDD|232871 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis [Cellular processes,
DNA transformation].
Length = 190
Score = 28.6 bits (64), Expect = 2.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 214 RHVLLLDPVLATGNSANQAIQLLIEKGVPE 243
R+++L+D V+ TG + ++ +LL+E G
Sbjct: 153 RNIVLVDDVVTTGATLHEIARLLLELGAAS 182
>gnl|CDD|176888 cd08879, RHO_alpha_C_AntDO-like, C-terminal catalytic domain of the
oxygenase alpha subunit of Pseudomonas resinovorans
strain CA10 anthranilate 1,2-dioxygenase and related
aromatic ring hydroxylating dioxygenases. C-terminal
catalytic domain of the oxygenase alpha subunit of
anthranilate 1,2-dioxygenase (AntDO) and related
Rieske-type non-heme iron aromatic ring-hydroxylating
oxygenases (RHOs, also known as aromatic ring
hydroxylating dioxygenases). RHOs utilize non-heme
Fe(II) to catalyze the addition of hydroxyl groups to
the aromatic ring, an initial step in the oxidative
degradation of aromatic compounds. RHOs are composed of
either two or three protein components, and are
comprised of an electron transport chain (ETC) and an
oxygenase. The ETC transfers reducing equivalents from
the electron donor to the oxygenase component, which in
turn transfers electrons to the oxygen molecules. The
oxygenase components are oligomers, either (alpha)n or
(alpha)n(beta)n. The alpha subunits are the catalytic
components and have an N-terminal domain, which binds a
Rieske-like 2Fe-2S cluster, and the C-terminal catalytic
domain which binds the non-heme Fe(II). The Fe(II) is
co-ordinated by conserved His and Asp residues.
Oxygenases belonging to this subgroup include the alpha
subunits of AntDO, aniline dioxygenase, Acinetobacter
calcoaceticus benzoate 1,2-dioxygenase, 2-halobenzoate
1,2-dioxygenase from Pseudomonas cepacia 2CBS,
2,4,5-trichlorophenoxyacetic acid oxygenase from
Pseudomonas cepacia AC1100, 2,4-dichlorophenoxyacetic
acid oxygenase from Bradyrhizobium sp. strain HW13,
p-cumate 2,3-dioxygenase, 2-halobenzoate 1,2-dioxygenase
form Pseudomonas cepacia 2CBS, and Pseudomonas putida
IacC, which may be involved in the catabolism of the
plant hormone indole 3-acetic acid. This subfamily
belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 237
Score = 28.5 bits (64), Expect = 3.4
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 32 SVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYP 91
SVL+ + + D P +Y ++ G+ I++ +L I+P
Sbjct: 68 SVLDSRPEIPRLDADRPKPPIAEYRAALVAAHGEERA--RRILRG-----RGRNLN-IFP 119
Query: 92 NVYVIQSTFQIR 103
N+++I + QIR
Sbjct: 120 NLFIIDISQQIR 131
>gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c)
SDRs. Human Mgc4172-like proteins, putative SDRs. These
proteins are members of the SDR family, with a canonical
active site tetrad and a typical Gly-rich NAD-binding
motif. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 250
Score = 28.6 bits (64), Expect = 3.9
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 173 SMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDISERHVLLLD-PVLATGNSANQ 231
SM +A+R +G+ + I+ G + + E + D VLA +
Sbjct: 73 SMFSAIRTQHQGVDV---CINNAGLARPEPLLSGKTEGWKE----MFDVNVLALSICTRE 125
Query: 232 AIQLLIEKGVPESHIIFLNLISA---PEGIHCVCKRFPSLKIVTSEIDVALNEEFR---- 284
A Q + E+ V + HII +N +S P V + + K + + L +E R
Sbjct: 126 AYQSMKERNVDDGHIININSMSGHRVPPV--SVFHFYAATKHAVTALTEGLRQELREAKT 183
Query: 285 ------VIPGL--GEFGDRYFGTD 300
+ PGL EF + D
Sbjct: 184 HIRATSISPGLVETEFAFKLHDND 207
>gnl|CDD|236492 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 28.7 bits (65), Expect = 4.2
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 126 LIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSG----ESMENALRAC 181
L V+E+ F E VV + ++ V++V G ES+ NAL A
Sbjct: 35 LWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEIKFVTLVTGGATRQESVRNALEA- 93
Query: 182 CKGIKIGKILIH 193
+ +LIH
Sbjct: 94 ---LDSEYVLIH 102
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 28.0 bits (63), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 12 DVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPS-KKYADVII 60
RL RR+ RD RG + + + P+ ++F++P ++ A V+
Sbjct: 130 LNRLLRRVVRDIQFRGYSAELTILMWPSV--PSGEEFIIPPLQEAAIVMF 177
>gnl|CDD|234685 PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.
Length = 417
Score = 28.5 bits (65), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 54 KYADVIIPRGG 64
Y DVIIPRGG
Sbjct: 196 GYVDVIIPRGG 206
>gnl|CDD|235028 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 27.7 bits (63), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 216 VLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249
VL++D +LATG + AI+LL G F+
Sbjct: 117 VLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFV 150
>gnl|CDD|223093 COG0014, ProA, Gamma-glutamyl phosphate reductase [Amino acid
transport and metabolism].
Length = 417
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 53 KKYADVIIPRGGDNHVAIDLIVQH 76
Y D++IPRGG I +V++
Sbjct: 194 DGYIDLVIPRGGAG--LIRRVVEN 215
>gnl|CDD|238574 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
phosphate kinase (HMPP-kinase) catalyzes two consecutive
phosphorylation steps in the thiamine phosphate
biosynthesis pathway, leading to the synthesis of
vitamin B1. The first step is the phosphorylation of the
hydroxyl group of HMP to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
(HMP-P) and then the phophorylation of HMP-P to form
4-amino-5-hydroxymethyl-2-methyl-pyrimidine
pyrophosphate (HMP-PP), which is the substrate for the
thiamine synthase coupling reaction.
Length = 242
Score = 27.5 bits (62), Expect = 7.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 217 LLLDPVL-ATGNS---ANQAIQLLIEKGVPESHIIFLNLISAPE 256
++LDPV+ A + AI+ L E +P + +I NL PE
Sbjct: 98 VVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNL---PE 138
>gnl|CDD|236989 PRK11809, putA, trifunctional transcriptional regulator/proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1318
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 12/33 (36%)
Query: 223 LATGNS------------ANQAIQLLIEKGVPE 243
LA GNS A QA+++L+E GVP
Sbjct: 793 LAAGNSVLAKPAEQTPLIAAQAVRILLEAGVPA 825
>gnl|CDD|161862 TIGR00407, proA, gamma-glutamyl phosphate reductase. The related
model TIGR01092 describes a full-length fusion protein
delta l-pyrroline-5-carboxylate synthetase that includes
a gamma-glutamyl phosphate reductase region as described
by this model. Alternate name: glutamate-5-semialdehyde
dehydrogenase. The prosite motif begins at residue 332
of the seed alignment although not all of the members of
the family exactly obey the motif [Amino acid
biosynthesis, Glutamate family].
Length = 398
Score = 27.8 bits (62), Expect = 7.6
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 54 KYADVIIPRGGDNHVAIDLIVQH 76
+Y D++IPRGG+ + LI Q
Sbjct: 184 EYIDLLIPRGGNG--LVRLIKQT 204
>gnl|CDD|226656 COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate
transport and metabolism].
Length = 245
Score = 27.5 bits (61), Expect = 7.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 208 PNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESH 245
PN+ S+ LD ATG S + QLL+ KG+ E+H
Sbjct: 62 PNNFSKNPFQFLDLTEATGISVEEVNQLLVGKGILENH 99
>gnl|CDD|176536 cd08594, PI-PLCc_eta, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-eta. This
family corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-eta represents a
class of neuron-speific PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal tail that terminates with a PDZ-binding
motif, a potential interaction site for other signaling
proteins. The PLC catalytic core domain is a TIM barrel
with two highly conserved regions (X and Y) split by a
highly degenerate linker sequence. There are two
PI-PLC-eta isozymes (1-2), both neuron-specific enzymes.
They function as calcium sensors that are activated by
small increases in intracellular calcium concentrations.
The PI-PLC-eta isozymes are also activated through GPCR
stimulation. Aside from the PI-PLC-eta isozymes
identified in mammals, their eukaryotic homologs are
also present in this family.
Length = 227
Score = 27.5 bits (61), Expect = 8.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 79 TKLGQHDLCKIYPNVYVIQST 99
+ Q L +IYP+ Y I S+
Sbjct: 171 LRFNQRQLSRIYPSAYRIDSS 191
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes in
bacteria and yeast. In humans, the P5CS (ALDH18A1), an
inner mitochondrial membrane enzyme, is essential to the
de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 27.8 bits (63), Expect = 8.7
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 54 KYADVIIPRGGDNHVAIDLIVQH 76
Y D+IIPRGG I +V++
Sbjct: 190 DYIDLIIPRGGAG--LIRFVVEN 210
>gnl|CDD|191255 pfam05310, Tenui_NS3, Tenuivirus movement protein. This family of
ssRNA negative-strand crop plant tenuivirus proteins
appears to combine PV2, NS2, NS3, and PV3 proteins.
Plant viruses encode specific proteins known as movement
proteins (MPs) to control their spread through
plasmodesmata (PD) in walls between cells as well as
from leaf to leaf via vascular-dependent transport.
During this movement process, the virally encoded MPs
interact with viral genomes for transport from the viral
replication sites to the PDs in the walls of infected
cells along the cytoskeleton and/or endoplasmic
reticulum (ER) network. The virus is then thought to
move through the PDs in the form of MP-associated
ribonucleoprotein complexes or as virions. The NS3
protein appears to function as an RNA silencing
suppressor.
Length = 186
Score = 27.1 bits (60), Expect = 8.9
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 75 QHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSD 124
+ + +H P Y I G+ + +H ++ ++
Sbjct: 132 ESYIVCMKEHS--GDDPTKY-IHEIVFPPGLKGYYKSPQKKEHKYIIVTN 178
>gnl|CDD|223428 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine
kinase [Coenzyme metabolism].
Length = 263
Score = 27.2 bits (61), Expect = 9.7
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 172 ESMENALRAC-----CKGIKIG-----KILIHRDGDNGKQLIYEKLPNDISERHVLLLDP 221
E +E L A +K G +I+ +++ EKL ++LDP
Sbjct: 58 EFVEAQLDAVFSDIPVDAVKTGMLGSAEII---------EVVAEKLKK--YGIGPVVLDP 106
Query: 222 VL-ATGNSA---NQAIQLLIEKGVPESHIIFLNLISA 254
V+ A +A++ L E+ +P + ++ NL A
Sbjct: 107 VMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEA 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.426
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,866,137
Number of extensions: 1571901
Number of successful extensions: 1568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 59
Length of query: 301
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 205
Effective length of database: 6,679,618
Effective search space: 1369321690
Effective search space used: 1369321690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)