RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022183
(301 letters)
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 258 bits (661), Expect = 1e-86
Identities = 117/244 (47%), Positives = 166/244 (68%), Gaps = 11/244 (4%)
Query: 57 DVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISK 116
++ PR N ++ D+ +PNV +++ T Q+R M T+IRD+ K
Sbjct: 9 LLVDPRYSTNDQEESIL----------QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPK 58
Query: 117 HDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMEN 176
+FVFY+DRLIRL++E L LPF +K+V TP Y GV F K+CGVSIVR+GESME+
Sbjct: 59 EEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES 118
Query: 177 ALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQL 235
LRA C+G++IGKILI RD + +LIYEKLP DI ER V+LLDP+ AT S +AI++
Sbjct: 119 GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEV 178
Query: 236 LIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDR 295
L+ GV E IIF+N+++AP+GI V K +P +++VT+ +D+ LN + ++PG+G+FGDR
Sbjct: 179 LLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDR 238
Query: 296 YFGT 299
YFGT
Sbjct: 239 YFGT 242
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 240 bits (613), Expect = 8e-80
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Query: 90 YPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPT 149
+PN++++ I+ T +RD+ S F + L+ +LP T K+V TP
Sbjct: 8 FPNLFILDHP-LIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPL 66
Query: 150 GSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPN 209
+ V KKL V ++R+G M + L ++G I ++R D+ + + Y
Sbjct: 67 VEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRA-DDHRPVEYLVRLP 125
Query: 210 DISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLK 269
D+ +R +L DP++ATG SA AI +L +GVP ++FL L++APEG+ P +K
Sbjct: 126 DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVK 185
Query: 270 IVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD 301
+ + +D L++ ++PGLG+ GDR FGT +
Sbjct: 186 LYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 219 bits (560), Expect = 9e-72
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 4/217 (1%)
Query: 84 HDLCKIYPNVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEK 143
H N+ V+ I+ T++RD+ +F + L+ HL E
Sbjct: 7 HHHHHHMKNLVVVD-HPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEV 65
Query: 144 QVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLI 203
+V TP K + V I+R+G M + + +G I I+RD + + +
Sbjct: 66 EVETPITKTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVE 125
Query: 204 Y-EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVC 262
Y KLP ++ V LLDP+LATG S+ +AI++L E G I + LI+APEG+ V
Sbjct: 126 YYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAK--KITLVALIAAPEGVEAVE 183
Query: 263 KRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
K++ +KI + +D LN+ +IPGLG+ GDR F T
Sbjct: 184 KKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 219 bits (559), Expect = 1e-71
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 4/209 (1%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
VYV I+ T IRD+ +F D + L+ LP E ++ TP
Sbjct: 3 KVYVFD-HPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSK 61
Query: 152 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 210
V KKL + I+R+G M + + K+G I ++RD K Y KLP+D
Sbjct: 62 ARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSD 121
Query: 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 270
+ ER +++DP+LATG SA AI L ++G I F+ LI+APEG+ V P + I
Sbjct: 122 VEERDFIIVDPMLATGGSAVAAIDALKKRGAK--SIKFMCLIAAPEGVKAVETAHPDVDI 179
Query: 271 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
+ +D LN+ ++PGLG+ GDR FGT
Sbjct: 180 YIAALDERLNDHGYIVPGLGDAGDRLFGT 208
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 217 bits (555), Expect = 4e-71
Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 4/208 (1%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
+ ++ ++ +RD+ DF ++ + L+ + L E V TP
Sbjct: 3 ITLVD-HPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPA 61
Query: 153 YTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGK-QLIYEKLPNDI 211
V KKL V+I+R+G M + ++G I ++RD ++ Y KLP DI
Sbjct: 62 RVKVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDI 121
Query: 212 SERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIV 271
+ER LLDP+LATG SA+ A+ LL E+G + + +++APEG+ + K P ++V
Sbjct: 122 AERRAFLLDPMLATGGSASLALSLLKERGAT--GVKLMAILAAPEGLERIAKDHPDTEVV 179
Query: 272 TSEIDVALNEEFRVIPGLGEFGDRYFGT 299
+ ID LN+ ++PGLG+ GDR +GT
Sbjct: 180 VAAIDERLNDHGYIVPGLGDAGDRIYGT 207
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 217 bits (553), Expect = 9e-71
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
+ V S I+ R + S L ++V L + EK+V T G+
Sbjct: 1 MIVELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNK 60
Query: 153 YTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPNDIS 212
+++ V I+R+G S K+G + I R+ + + IY ++
Sbjct: 61 RFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPELK 120
Query: 213 ERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVT 272
+ V++LDP+LATG + A++ +++ + ++ I+APEG+ + ++F ++I
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSP--LKVKSVHAIAAPEGLKRIEEKFKEVEIFV 178
Query: 273 SEIDVALNEEFRVIPGLGEFGDRYFGTD 300
+D LN++ +IPGLG+ GDR +
Sbjct: 179 GNVDERLNDKGYIIPGLGDIGDRLYAVS 206
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 202 bits (515), Expect = 4e-65
Identities = 61/209 (29%), Positives = 105/209 (50%), Gaps = 4/209 (1%)
Query: 92 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGS 151
+ ++ ++ L+R++ IS F + + L+ L + + G
Sbjct: 2 KIVEVK-HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGP 60
Query: 152 MYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ-LIYEKLPND 210
+ KK+ V I+R+G M + + +I + ++R+ + + ++KL ++
Sbjct: 61 VEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSN 120
Query: 211 ISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKI 270
I ER L++DP+LATG S I LL + G S I L L++APEGI + K P +++
Sbjct: 121 IDERMALIVDPMLATGGSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAHPDVEL 178
Query: 271 VTSEIDVALNEEFRVIPGLGEFGDRYFGT 299
T+ ID LNE +IPGLG+ GD+ FGT
Sbjct: 179 YTASIDQGLNEHGYIIPGLGDAGDKIFGT 207
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 192 bits (489), Expect = 4e-61
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 93 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSM 152
+YVI + T +RD+ + +F RL R++ L + +V TP G
Sbjct: 3 LYVIDKP-ITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVK 61
Query: 153 YTGVDFC--KKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQ--------L 202
GVD + ++I+R+ + L + G I R +GK+ +
Sbjct: 62 TKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYI 121
Query: 203 IYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIHCV 261
Y+K+P+ ++ +V++ DP++AT ++ + ++ +++ I +++IS+ G++ +
Sbjct: 122 YYKKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKI 179
Query: 262 CKRFPSLKIVTSEIDVALNEEFRVIPGLGEFGDRYFG 298
++P + + T ID LN + ++PGLG+ GDR FG
Sbjct: 180 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 146 bits (370), Expect = 4e-43
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
M++K+FVD DAD R RR++RD +ERGR ++ V+ QY + VKP FV P+K+YADVI+
Sbjct: 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIV 184
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQ 83
PRGG N VA++++ +L +
Sbjct: 185 PRGGQNPVALEMLAAKALARLAR 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 139 bits (353), Expect = 3e-40
Identities = 56/92 (60%), Positives = 72/92 (78%), Gaps = 2/92 (2%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++++FVDTD+DVRL+RR+ RD V RGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 154 FHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVII 212
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPN 92
PRG DN VAI+LIVQHI L D+CK +
Sbjct: 213 PRGVDNMVAINLIVQHIQDIL-NGDICKWHRG 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 135 bits (342), Expect = 1e-38
Identities = 55/83 (66%), Positives = 65/83 (78%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
MK+FVDTDAD RL+RR+ RD ERGRD++ +L QY FVKPAF++F LP+KKYADVII
Sbjct: 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQ 83
PRG DN VAI+LIVQHI L
Sbjct: 211 PRGADNLVAINLIVQHIQDILNG 233
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 94.0 bits (233), Expect = 1e-22
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 22/131 (16%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++KI V ++ ++I RD RG ++V + + A+ ++P D+
Sbjct: 148 ADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILR-RMHAYVHCIVPQFSQTDINF 206
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQHDLCKIY---------------------PNVYVIQST 99
R + I + I T + + N V+
Sbjct: 207 QRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTSMIHGSWMSRANSIVVPGN 266
Query: 100 FQIRGMHTLIR 110
M ++
Sbjct: 267 KLDLAMQLILT 277
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 85.0 bits (210), Expect = 4e-19
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 19/87 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTV---ERGRDVDSVLEQYAK----------------FV 41
+ ++VD + + R D +S YA
Sbjct: 218 FDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTIN 277
Query: 42 KPAFDDFVLPSKKYADVIIPRGGDNHV 68
+P + +LP++ A +++ + D+ +
Sbjct: 278 RPNLVENILPTRPRATLVLRKDADHSI 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 78.4 bits (193), Expect = 2e-17
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
N F+ + RR R + V P + + + ++
Sbjct: 130 WNRSYFLTIPYEECKRRRSTRVY-----QPPDSPGYFDGHVWPMYLKYRQEMQDITWEVV 184
Query: 61 PRGGDNHVAIDLIVQHIHTKLGQ 83
D + + + ++ L Q
Sbjct: 185 Y--LDGTKSEEDLFLQVYEDLIQ 205
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 80.0 bits (197), Expect = 2e-17
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG---RDVDSVLEQYAKF----------------V 41
++ I+VD D+ I R R D DS YAK
Sbjct: 215 VDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEIN 274
Query: 42 KPAFDDFVLPSKKYADVIIPRGGDNHV 68
+LP+++ A +I+ + ++ V
Sbjct: 275 WLNLKQNILPTRERASLILTKSANHAV 301
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 77.4 bits (191), Expect = 3e-17
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
+ +++D ++R AR + +++ + +Y K + + + P K ADV+
Sbjct: 144 FDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEEP-IKRADVVF 197
Query: 61 P 61
Sbjct: 198 D 198
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 71.7 bits (176), Expect = 4e-15
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVII 60
++ I ++ AR ++R ++ G + D+ + + + ++ AD+
Sbjct: 148 WDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLANA-RAIEAARLPADLTW 205
Query: 61 PRG 63
P+
Sbjct: 206 PQA 208
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 72.3 bits (177), Expect = 1e-14
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 29/97 (29%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERG-------------RDVDSVLEQYAK-------- 39
+++FV D L + +++ +D S +
Sbjct: 217 QQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAA 276
Query: 40 --------FVKPAFDDFVLPSKKYADVIIPRGGDNHV 68
K + +LP K A +I+ + D+ +
Sbjct: 277 FAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 37.3 bits (86), Expect = 0.003
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 205 EKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFLNLISAPEGIH 259
+ R V+L+D +ATG S A+ ++ ++G ++ +++PE +
Sbjct: 112 VRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVPVASPEAVE 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 64/389 (16%), Positives = 111/389 (28%), Gaps = 157/389 (40%)
Query: 32 SVLEQYAKFVKPAF-DDFVLPSK--KYADVI----------IPRGGDNH-VAIDLIVQHI 77
+ E KF+ + V PSK ++ V+ G D H +A L+ ++
Sbjct: 56 TPAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 78 HTKLGQHDLCKIYPNVY----VIQSTFQIRGMHTLIR--DRGISK--------------- 116
T + +L K Y + + F + L R G ++
Sbjct: 114 TTLVKTKELIKNY---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 117 --------------HDFVFYS-DRLIRLVVE---------HGLGHLPFTEKQVVTPTG-- 150
D + +S + L L+ GL L + E TP
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 151 ------SM-------------------YTGVDFCKKLCGVS----------IVRSGESME 175
S +T + L G + + +S E
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 176 NALRACCKGIK----IG------------KILIHRDG-DNGKQLIYEKLPNDISERHVLL 218
+ + K I IG I D +N E +P+
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-----EGVPS--------- 336
Query: 219 LDPVLA-TGNSANQAIQLLIEK---GVPESHIIFLNLISAPEGIHCVCKRFP-SLKIVTS 273
P+L+ + + Q +Q + K +P + ++L++ + + V P SL
Sbjct: 337 --PMLSISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAK--NLVVSGPPQSL----- 386
Query: 274 EIDVALNEEFRVI---PGLG----EFGDR 295
LN R GL F +R
Sbjct: 387 ---YGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 33.9 bits (77), Expect = 0.076
Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 93/229 (40%)
Query: 25 ERGRDVDSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLG-- 82
E+G+ + E Y+ + D L ++K I N + + L
Sbjct: 1679 EKGK---RIRENYSAMIFETIVDGKLKTEKIFKEI------NEHSTSYTFRSEKGLLSAT 1729
Query: 83 ---QHDLCKIYPNVYVIQ-STFQIRGMHTLIRDRGISKHDFVF-------YS-------- 123
Q P + +++ + F+ ++ +G+ D F Y+
Sbjct: 1730 QFTQ-------PALTLMEKAAFE------DLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 124 ----DRLIRLVVEHGLGHLPFTEKQV--------------VTPTGSMYTGVD------FC 159
L+ +V G+ + V + P G +
Sbjct: 1777 MSIES-LVEVVFYRGM----TMQVAVPRDELGRSNYGMIAINP-GRVAASFSQEALQYVV 1830
Query: 160 KKLCG-----VSI----------VRSGESMENALRA---CCKGIKIGKI 190
+++ V I V +G+ AL IK+ KI
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYVAAGD--LRALDTVTNVLNFIKLQKI 1877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.007
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 44/150 (29%)
Query: 31 DSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHI--H-TKLGQHDLC 87
S+++ Y DD + P D + HI H + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL-----------DQY-----FYSHIGHHLKNIEHPERM 490
Query: 88 KIYPNVYV----IQSTFQIRGMHTLIRDRGISKH---DFVFYSDRLIRLVVEHGLGHLPF 140
++ V++ ++ +IR T G + FY + + P
Sbjct: 491 TLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYICD--------NDPK 540
Query: 141 TEKQVVTPTGSMYTGVDFCKKLCGVSIVRS 170
E+ V +DF K +++ S
Sbjct: 541 YERLV-------NAILDFLPK-IEENLICS 562
Score = 33.7 bits (76), Expect = 0.073
Identities = 43/306 (14%), Positives = 85/306 (27%), Gaps = 94/306 (30%)
Query: 75 QHIHTKLGQHDLC--KIYPNVYVIQSTF-----------QIRGM-------HTLIRDRGI 114
H+ + G+H I V + F + + H ++ +
Sbjct: 5 HHMDFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 115 SKHDFVF-----YSDRLIRLVVEHGLG-HLPFTEKQVVT----PTGSMYTGVDFCKKLCG 164
S +F + +++ VE L + F + T P+ ++ +L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 165 V-------SIVRSGESMENALRACCKGIKIGK-ILIHRDGDNGKQ-L---------IYEK 206
++ R LR ++ K +LI +GK + + K
Sbjct: 122 DNQVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 207 LPNDI---------SERHVL--------LLDPVLATGNSANQAIQ------------LLI 237
+ I S VL +DP + + + I+ LL
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 238 EKGVPESHIIFLNLISAPE-----GIHC---VCKRFPSLKIVTSEIDVALNEEFRVIPGL 289
K ++ LN + + + C + RF VT + A +
Sbjct: 240 SKPYENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAATTTHISLDHHS 295
Query: 290 GEFGDR 295
Sbjct: 296 MTLTPD 301
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 33.4 bits (77), Expect = 0.033
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 193 HRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHI 246
D K +I + D+ ++ V+++D V TG + I+ + + G E I
Sbjct: 63 GIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKI 116
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 33.2 bits (76), Expect = 0.062
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 190 ILIHRD--GDNGKQLIYEK--LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
I ++RD + + I + V+L+D VL +G S A+ L + G P +
Sbjct: 85 ITLYRDDLMIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRA 143
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 32.4 bits (73), Expect = 0.12
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 202 LIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIFL 249
+ YE+ D+ ++VL++D V T + + A+ L + ++ +
Sbjct: 92 IDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQAKAKGI 139
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide
biosynthesis, transcriptional attenuation, RNA-binding
protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Length = 181
Score = 31.9 bits (73), Expect = 0.14
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 193 HRD--GDNGKQLIYEK--LPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
+RD + G + + +P D++ + ++L+D VL TG +A A+ LI+ G P
Sbjct: 72 YRDDLTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRR 127
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 31.8 bits (73), Expect = 0.19
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 189 KILIHRDGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPESHIIF 248
K + ++ G ++ + L +I+ L LATG++ + + + E + S ++
Sbjct: 3 KTIKVKNKTEGSKVAFRMLEEEITFGAKTL---GLATGSTPLELYKEIRESHLDFSDMVS 59
Query: 249 LNL 251
+NL
Sbjct: 60 INL 62
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription
regulation, attenuation protein, RNA-binding P
pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP:
c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Length = 181
Score = 31.5 bits (72), Expect = 0.21
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 206 KLPNDISERHVLLLDPVLATGNSANQAIQLLIEKGVPES 244
+P DI+++ V+L+D VL TG + + L++ G P S
Sbjct: 91 DIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSS 129
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; 1.95A {Pseudomonas
aeruginosa} SCOP: d.107.1.3
Length = 148
Score = 28.5 bits (63), Expect = 1.5
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 1 MNMKIFVDTDADVRLARRIRRDTVERGRDVDSVLEQYAKFVKPAFDDFVLPSKK 54
+N+ + + I RD + + + + + F L +
Sbjct: 24 INIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQLPGFKLHKRW 77
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 29.2 bits (65), Expect = 1.7
Identities = 6/62 (9%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 88 KIYPNVYVIQSTF-------QIRGMHTLIRDRGIS---------KHDFVFYSDRLIRLVV 131
+ +++++ S Q + + ++D +S H+ V+ + ++ + +
Sbjct: 210 RFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVYKNGKVAKYIF 269
Query: 132 EH 133
++
Sbjct: 270 DN 271
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 53 KKYADVIIPRGG 64
++Y ++IPRGG
Sbjct: 205 REYLSLVIPRGG 216
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 28.3 bits (64), Expect = 3.5
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 54 KYADVIIPRGG 64
+Y D+++PRG
Sbjct: 209 EYIDLVVPRGS 219
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 28.2 bits (63), Expect = 3.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 225 TGNSANQAIQLLIEKGVPESHII 247
T + + L+ +GV I+
Sbjct: 393 TAYTTVNGVNALLAQGVKPGKIV 415
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 28.3 bits (63), Expect = 3.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 220 DPVLATGNSANQAIQLLIEKGVPESHII 247
+P +A+ IQLL+ +GVP + ++
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLV 434
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 27.6 bits (62), Expect = 5.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 54 KYADVIIPRGG 64
K D+IIPRG
Sbjct: 218 KMIDLIIPRGS 228
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 27.3 bits (61), Expect = 5.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 201 QLIYEKLPNDISERH---------VLLLDPVLATGNSANQAIQLLIEK 239
+ Y++ ++ V+L+D VLATG +A +Q L+E
Sbjct: 117 EKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQ-LVEA 163
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain,
catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP:
c.61.1.1 PDB: 1g2p_A
Length = 187
Score = 27.1 bits (61), Expect = 6.2
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 216 VLLLDPVLATGNSANQAIQLLIEK 239
V+++D ++ATG SA A + L+E+
Sbjct: 125 VIIVDDIIATGGSAAAAGE-LVEQ 147
>1vch_A Phosphoribosyltransferase-related protein; structural genomics,
riken structural genomics/proteomics initiative, RSGI;
1.94A {Thermus thermophilus} SCOP: c.61.1.1
Length = 175
Score = 27.0 bits (60), Expect = 6.7
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 214 RHVLLLDPVLATGNSANQAIQLLIEKG 240
+ V+L+ V+A+G + ++++ G
Sbjct: 121 QRVVLVSDVVASGETMRAMEKMVLRAG 147
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 27.4 bits (61), Expect = 6.9
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 224 ATGNSANQAIQLLIEKGVPESHII 247
+ SA++A++ + G+ +
Sbjct: 290 SKKFSADKAVKKYLAAGIDPKQLG 313
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 26.7 bits (60), Expect = 7.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 216 VLLLDPVLATGNSANQAIQLL 236
V+++D +LATG + N A +LL
Sbjct: 123 VVVVDDLLATGGTMNAACELL 143
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural
genomics, JOI for structural genomics, JCSG; HET: GOL;
2.40A {Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 26.8 bits (60), Expect = 8.1
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 21/58 (36%)
Query: 1 MNMKIFVDTDADVRLARR----------------IRRDTVERGRDVDSVLEQYAKFVK 42
+MKIF+DT A++ ++ I ++ G + +++ VK
Sbjct: 11 HHMKIFLDT-ANLEEIKKGVEWGIVDGVTTNPTLISKE----GAEFKQRVKEICDLVK 63
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 26.9 bits (60), Expect = 8.7
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 113 GISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKK 161
+ + D L R V E L LP + V + G + +
Sbjct: 175 NVVEAD-------LKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVR 216
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 26.9 bits (60), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 224 ATGNSANQAIQLLIEKGVPESHII 247
+T S A+ I GVP S II
Sbjct: 247 STPFSTKAAVDAYIAAGVPASKII 270
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 26.9 bits (60), Expect = 9.9
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 224 ATGNSANQAIQLLIEKGVPESHII 247
+T S+++A++ I+ GVP + I+
Sbjct: 229 STPFSSDKAVKDYIKAGVPANKIV 252
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.426
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,881,824
Number of extensions: 310816
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 72
Length of query: 301
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 208
Effective length of database: 4,105,140
Effective search space: 853869120
Effective search space used: 853869120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)