Query 022184
Match_columns 301
No_of_seqs 636 out of 1698
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 08:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.8E-49 8.3E-54 297.6 23.5 268 3-301 114-464 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-48 2.1E-52 293.1 21.7 267 3-301 174-443 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-44 1.6E-48 272.0 18.4 243 3-272 216-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.4E-47 262.7 22.8 232 54-301 106-422 (480)
5 KOG0286 G-protein beta subunit 100.0 4.8E-40 1E-44 240.2 29.1 272 3-301 54-328 (343)
6 KOG0263 Transcription initiati 100.0 1.1E-41 2.3E-46 278.6 20.9 250 4-275 378-650 (707)
7 KOG0279 G protein beta subunit 100.0 6.1E-40 1.3E-44 238.2 26.3 272 4-301 15-296 (315)
8 KOG0284 Polyadenylation factor 100.0 1.4E-41 3E-46 258.5 16.0 266 4-300 96-362 (464)
9 KOG0273 Beta-transducin family 100.0 6.1E-40 1.3E-44 253.8 24.9 268 4-301 235-506 (524)
10 KOG0279 G protein beta subunit 100.0 8.2E-40 1.8E-44 237.5 23.4 235 56-299 8-244 (315)
11 KOG0286 G-protein beta subunit 100.0 2.9E-39 6.4E-44 236.1 23.9 245 4-272 97-343 (343)
12 KOG0315 G-protein beta subunit 100.0 1.1E-37 2.4E-42 223.1 26.8 261 4-296 40-308 (311)
13 KOG0273 Beta-transducin family 100.0 2.1E-38 4.6E-43 245.3 24.6 274 3-301 177-465 (524)
14 KOG0291 WD40-repeat-containing 100.0 2E-37 4.3E-42 252.5 28.1 279 4-301 96-533 (893)
15 KOG0263 Transcription initiati 100.0 1.4E-38 2.9E-43 260.5 20.2 235 59-301 374-632 (707)
16 KOG0315 G-protein beta subunit 100.0 7.9E-37 1.7E-41 218.8 25.9 249 32-301 17-271 (311)
17 KOG0266 WD40 repeat-containing 100.0 3.4E-37 7.4E-42 256.6 28.2 270 4-300 159-434 (456)
18 KOG0295 WD40 repeat-containing 100.0 2.4E-37 5.2E-42 232.3 22.8 270 4-299 108-387 (406)
19 KOG0265 U5 snRNP-specific prot 100.0 1.6E-36 3.4E-41 222.6 25.6 265 3-299 46-319 (338)
20 KOG0296 Angio-associated migra 100.0 4.1E-36 9E-41 225.8 25.1 269 3-301 63-381 (399)
21 cd00200 WD40 WD40 domain, foun 100.0 3.6E-35 7.8E-40 232.5 31.8 267 3-301 8-274 (289)
22 KOG0291 WD40-repeat-containing 100.0 7.9E-35 1.7E-39 237.5 28.7 267 5-301 308-595 (893)
23 KOG0284 Polyadenylation factor 100.0 1.1E-36 2.5E-41 231.9 16.1 242 3-274 137-380 (464)
24 KOG0282 mRNA splicing factor [ 100.0 2.9E-36 6.3E-41 234.2 17.2 266 4-299 214-485 (503)
25 PTZ00421 coronin; Provisional 100.0 1.6E-34 3.4E-39 239.9 28.3 240 58-299 70-314 (493)
26 KOG0318 WD40 repeat stress pro 100.0 4.3E-34 9.3E-39 224.4 28.5 275 5-299 191-584 (603)
27 KOG0265 U5 snRNP-specific prot 100.0 1.2E-34 2.5E-39 212.8 21.2 232 56-301 40-279 (338)
28 KOG0285 Pleiotropic regulator 100.0 6.2E-35 1.3E-39 219.2 19.9 231 54-300 142-372 (460)
29 PLN00181 protein SPA1-RELATED; 100.0 1.6E-33 3.5E-38 250.8 32.2 273 3-301 482-776 (793)
30 KOG0645 WD40 repeat protein [G 100.0 2.4E-33 5.1E-38 203.2 25.4 227 56-297 7-242 (312)
31 KOG0973 Histone transcription 100.0 2.5E-34 5.4E-39 243.2 23.6 289 4-301 13-338 (942)
32 KOG0293 WD40 repeat-containing 100.0 4.1E-34 8.8E-39 218.5 22.4 269 2-300 222-494 (519)
33 KOG0645 WD40 repeat protein [G 100.0 6E-33 1.3E-37 201.2 27.1 265 4-299 14-291 (312)
34 KOG0316 Conserved WD40 repeat- 100.0 5.6E-34 1.2E-38 202.7 21.4 261 3-299 16-281 (307)
35 KOG0292 Vesicle coat complex C 100.0 4.4E-34 9.5E-39 237.0 24.0 265 4-300 9-304 (1202)
36 KOG0266 WD40 repeat-containing 100.0 1.2E-33 2.7E-38 235.3 27.0 219 56-286 151-375 (456)
37 KOG0319 WD40-repeat-containing 100.0 1E-33 2.3E-38 230.3 25.6 269 4-300 323-601 (775)
38 KOG0276 Vesicle coat complex C 100.0 5E-34 1.1E-38 228.5 22.7 267 4-300 13-281 (794)
39 KOG0318 WD40 repeat stress pro 100.0 1.2E-32 2.5E-37 216.4 27.7 265 4-298 103-373 (603)
40 KOG0319 WD40-repeat-containing 100.0 8.3E-34 1.8E-38 230.9 21.3 240 20-275 378-620 (775)
41 KOG1407 WD40 repeat protein [F 100.0 5.2E-33 1.1E-37 200.5 22.9 264 3-299 19-283 (313)
42 PTZ00420 coronin; Provisional 100.0 5.4E-32 1.2E-36 226.0 31.1 253 32-299 51-317 (568)
43 KOG0283 WD40 repeat-containing 100.0 2.9E-33 6.3E-38 231.1 23.1 251 3-276 266-578 (712)
44 KOG0275 Conserved WD40 repeat- 100.0 1.3E-33 2.9E-38 210.0 18.9 274 4-299 213-490 (508)
45 KOG0277 Peroxisomal targeting 100.0 3.9E-33 8.4E-38 200.4 20.4 276 4-299 8-289 (311)
46 KOG0640 mRNA cleavage stimulat 100.0 3.5E-33 7.5E-38 206.4 19.6 279 2-300 110-408 (430)
47 cd00200 WD40 WD40 domain, foun 100.0 5.1E-32 1.1E-36 214.4 27.9 229 57-300 3-231 (289)
48 KOG0285 Pleiotropic regulator 100.0 1.6E-32 3.4E-37 206.4 23.2 265 4-300 151-421 (460)
49 KOG0281 Beta-TrCP (transducin 100.0 6.2E-34 1.3E-38 213.4 15.6 252 3-297 196-458 (499)
50 KOG0310 Conserved WD40 repeat- 100.0 3.8E-32 8.3E-37 211.6 23.3 264 3-301 25-292 (487)
51 KOG0295 WD40 repeat-containing 100.0 7.5E-33 1.6E-37 208.3 18.6 234 53-301 98-347 (406)
52 PLN00181 protein SPA1-RELATED; 100.0 1.7E-31 3.7E-36 237.9 29.1 234 58-301 478-721 (793)
53 KOG0277 Peroxisomal targeting 100.0 7.8E-33 1.7E-37 198.9 16.2 243 4-273 60-308 (311)
54 KOG0643 Translation initiation 100.0 4.3E-32 9.3E-37 196.4 19.9 267 2-301 8-300 (327)
55 KOG0278 Serine/threonine kinas 100.0 9.1E-33 2E-37 198.3 15.9 267 3-301 13-280 (334)
56 KOG0306 WD40-repeat-containing 100.0 8.8E-32 1.9E-36 219.7 22.7 212 58-275 449-665 (888)
57 KOG0641 WD40 repeat protein [G 100.0 2.8E-30 6.1E-35 183.2 26.6 280 2-299 30-330 (350)
58 KOG0288 WD40 repeat protein Ti 100.0 4.1E-32 8.8E-37 207.4 18.2 266 4-301 175-444 (459)
59 KOG1407 WD40 repeat protein [F 100.0 1.8E-31 4E-36 192.6 19.7 231 56-301 13-244 (313)
60 KOG0283 WD40 repeat-containing 100.0 2.4E-31 5.2E-36 219.8 22.4 237 56-301 259-559 (712)
61 KOG0305 Anaphase promoting com 100.0 5.2E-31 1.1E-35 212.2 23.2 243 4-276 217-463 (484)
62 KOG0313 Microtubule binding pr 100.0 5.4E-31 1.2E-35 199.3 21.8 254 3-274 143-418 (423)
63 KOG0313 Microtubule binding pr 100.0 1E-30 2.2E-35 197.8 23.3 245 33-299 123-400 (423)
64 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-29 2.6E-34 188.0 27.7 265 3-299 13-286 (311)
65 KOG0294 WD40 repeat-containing 100.0 4.5E-30 9.7E-35 190.1 23.6 211 55-276 35-283 (362)
66 KOG0264 Nucleosome remodeling 100.0 1.1E-30 2.3E-35 201.9 20.9 259 4-275 124-405 (422)
67 KOG0316 Conserved WD40 repeat- 100.0 1.7E-30 3.7E-35 185.1 18.5 212 57-286 11-224 (307)
68 KOG0772 Uncharacterized conser 100.0 9.9E-31 2.2E-35 205.3 18.8 240 55-301 159-422 (641)
69 KOG0292 Vesicle coat complex C 100.0 4.9E-30 1.1E-34 213.2 23.5 242 2-274 49-321 (1202)
70 KOG0296 Angio-associated migra 100.0 1E-29 2.2E-34 191.6 22.8 241 2-274 104-398 (399)
71 KOG0772 Uncharacterized conser 100.0 3.8E-30 8.2E-35 202.1 21.0 275 6-299 169-468 (641)
72 KOG0647 mRNA export protein (c 100.0 1.7E-29 3.7E-34 186.0 22.9 266 4-301 27-306 (347)
73 KOG0276 Vesicle coat complex C 100.0 3.2E-30 6.9E-35 206.9 20.5 228 58-299 8-238 (794)
74 KOG0305 Anaphase promoting com 100.0 3.3E-29 7.1E-34 201.8 26.0 225 63-301 217-444 (484)
75 KOG0275 Conserved WD40 repeat- 100.0 7.7E-31 1.7E-35 195.4 14.6 233 61-300 211-449 (508)
76 KOG0643 Translation initiation 100.0 3.7E-29 8E-34 181.3 22.0 226 57-299 4-242 (327)
77 KOG0299 U3 snoRNP-associated p 100.0 8E-29 1.7E-33 191.9 25.2 274 3-301 141-438 (479)
78 KOG0306 WD40-repeat-containing 100.0 8.1E-29 1.8E-33 202.6 25.9 274 3-300 319-604 (888)
79 KOG0310 Conserved WD40 repeat- 100.0 3E-29 6.4E-34 195.6 21.8 240 5-275 69-310 (487)
80 KOG0281 Beta-TrCP (transducin 100.0 2.2E-30 4.8E-35 194.4 14.7 240 1-279 234-482 (499)
81 KOG0289 mRNA splicing factor [ 100.0 8.5E-29 1.9E-33 190.6 23.3 261 7-299 222-487 (506)
82 PTZ00421 coronin; Provisional 100.0 1.9E-28 4.2E-33 203.7 27.4 233 63-301 20-272 (493)
83 KOG0282 mRNA splicing factor [ 100.0 9.7E-31 2.1E-35 203.6 12.5 234 55-301 206-445 (503)
84 KOG0278 Serine/threonine kinas 100.0 5.2E-30 1.1E-34 184.2 15.2 204 61-279 98-302 (334)
85 KOG0293 WD40 repeat-containing 100.0 2.1E-29 4.6E-34 192.9 18.7 245 3-276 268-515 (519)
86 KOG0264 Nucleosome remodeling 100.0 6E-29 1.3E-33 192.3 20.9 288 5-299 41-384 (422)
87 KOG0640 mRNA cleavage stimulat 100.0 1.7E-29 3.8E-34 186.9 16.7 222 56-282 105-343 (430)
88 KOG0308 Conserved WD40 repeat- 100.0 3.4E-29 7.4E-34 201.7 19.3 242 16-276 34-287 (735)
89 KOG0973 Histone transcription 100.0 1.6E-28 3.5E-33 208.3 23.1 258 3-277 68-358 (942)
90 KOG2096 WD40 repeat protein [G 100.0 2.4E-28 5.1E-33 181.5 20.9 240 53-301 76-386 (420)
91 KOG1036 Mitotic spindle checkp 100.0 1.9E-27 4.2E-32 175.7 24.3 261 4-301 13-287 (323)
92 KOG0274 Cdc4 and related F-box 100.0 4.6E-28 9.9E-33 201.9 23.7 254 5-297 209-463 (537)
93 KOG0771 Prolactin regulatory e 100.0 4.5E-28 9.8E-33 186.1 21.2 186 114-301 146-337 (398)
94 KOG0289 mRNA splicing factor [ 100.0 6.5E-28 1.4E-32 185.7 22.0 225 64-301 220-445 (506)
95 KOG0288 WD40 repeat protein Ti 100.0 1.6E-28 3.5E-33 187.9 18.3 236 4-272 219-459 (459)
96 PTZ00420 coronin; Provisional 100.0 3.3E-27 7.1E-32 197.5 26.8 232 3-256 73-318 (568)
97 KOG0267 Microtubule severing p 100.0 1.3E-29 2.8E-34 206.3 10.7 229 58-301 23-251 (825)
98 KOG2055 WD40 repeat protein [G 100.0 3.6E-27 7.7E-32 183.0 23.0 272 4-300 213-494 (514)
99 KOG0639 Transducin-like enhanc 100.0 5.3E-28 1.1E-32 189.8 18.2 269 4-301 419-687 (705)
100 KOG0646 WD40 repeat protein [G 100.0 2.1E-27 4.6E-32 184.4 21.4 220 63-298 81-329 (476)
101 KOG0300 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 177.7 18.6 251 32-299 167-455 (481)
102 KOG0269 WD40 repeat-containing 100.0 4.7E-28 1E-32 198.7 17.7 245 9-275 92-341 (839)
103 KOG1274 WD40 repeat protein [G 100.0 1.6E-26 3.4E-31 193.1 26.8 260 5-300 14-282 (933)
104 KOG0268 Sof1-like rRNA process 100.0 2.5E-28 5.3E-33 184.1 14.5 261 4-301 66-328 (433)
105 KOG0269 WD40 repeat-containing 100.0 3.4E-28 7.5E-33 199.4 16.5 274 4-298 39-319 (839)
106 KOG1332 Vesicle coat complex C 100.0 3.3E-27 7.1E-32 169.2 19.0 232 31-274 29-286 (299)
107 KOG1446 Histone H3 (Lys4) meth 100.0 5.4E-26 1.2E-30 168.7 25.1 228 58-301 9-245 (311)
108 KOG1539 WD repeat protein [Gen 100.0 3.4E-26 7.3E-31 189.3 26.1 179 113-301 449-630 (910)
109 KOG0274 Cdc4 and related F-box 100.0 7.3E-27 1.6E-31 194.7 22.0 240 3-282 248-490 (537)
110 KOG2048 WD40 repeat protein [G 100.0 1E-25 2.2E-30 182.5 26.0 263 5-298 26-301 (691)
111 KOG0641 WD40 repeat protein [G 100.0 3.9E-25 8.5E-30 157.2 25.8 245 4-274 89-349 (350)
112 KOG0308 Conserved WD40 repeat- 100.0 3E-27 6.6E-32 190.5 16.0 218 73-299 35-266 (735)
113 KOG4378 Nuclear protein COP1 [ 100.0 2.4E-26 5.3E-31 180.2 19.4 266 7-299 37-304 (673)
114 KOG0639 Transducin-like enhanc 99.9 1.3E-26 2.8E-31 182.0 16.9 229 60-301 416-646 (705)
115 KOG1332 Vesicle coat complex C 99.9 1.7E-26 3.6E-31 165.6 15.5 238 59-301 7-269 (299)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2E-24 4.3E-29 172.7 29.2 258 6-298 32-300 (300)
117 KOG4328 WD40 protein [Function 99.9 2.8E-25 6.1E-30 172.4 21.4 273 4-299 186-475 (498)
118 KOG4283 Transcription-coupled 99.9 1.1E-25 2.3E-30 165.8 18.0 212 60-277 40-279 (397)
119 KOG2106 Uncharacterized conser 99.9 1.9E-24 4.2E-29 169.8 26.0 273 4-301 154-504 (626)
120 KOG0270 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 173.5 18.7 255 8-281 177-456 (463)
121 KOG1036 Mitotic spindle checkp 99.9 1.7E-24 3.7E-29 160.2 23.4 228 3-264 53-294 (323)
122 KOG1063 RNA polymerase II elon 99.9 2.9E-25 6.2E-30 180.4 21.0 280 6-298 193-674 (764)
123 KOG2445 Nuclear pore complex c 99.9 2.3E-24 5E-29 159.5 23.2 254 5-274 14-318 (361)
124 KOG0290 Conserved WD40 repeat- 99.9 2.1E-24 4.6E-29 158.6 22.2 282 4-299 44-346 (364)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-23 2.7E-28 168.1 29.0 242 33-301 9-261 (300)
126 KOG4283 Transcription-coupled 99.9 3.9E-24 8.5E-29 157.6 23.2 272 4-299 43-346 (397)
127 KOG1408 WD40 repeat protein [F 99.9 1.7E-24 3.7E-29 176.9 23.5 257 33-301 344-696 (1080)
128 KOG0267 Microtubule severing p 99.9 1.2E-26 2.6E-31 189.2 11.0 213 33-266 48-260 (825)
129 KOG0302 Ribosome Assembly prot 99.9 3.2E-25 7E-30 168.2 17.9 218 52-274 140-378 (440)
130 KOG0299 U3 snoRNP-associated p 99.9 3.6E-25 7.8E-30 171.8 17.7 235 57-299 136-391 (479)
131 KOG0307 Vesicle coat complex C 99.9 8E-26 1.7E-30 193.1 15.2 278 9-299 11-307 (1049)
132 KOG1273 WD40 repeat protein [G 99.9 2.3E-24 4.9E-29 160.2 20.9 260 7-298 26-303 (405)
133 KOG0303 Actin-binding protein 99.9 2.2E-24 4.8E-29 164.6 20.5 216 58-277 76-297 (472)
134 KOG0270 WD40 repeat-containing 99.9 2.3E-24 4.9E-29 166.8 19.9 241 19-277 137-407 (463)
135 KOG0647 mRNA export protein (c 99.9 3.7E-24 8E-29 158.0 20.0 229 2-263 70-312 (347)
136 KOG0268 Sof1-like rRNA process 99.9 1.4E-25 2.9E-30 169.4 12.6 226 56-301 59-285 (433)
137 KOG0302 Ribosome Assembly prot 99.9 6.6E-24 1.4E-28 161.1 20.4 228 34-271 174-435 (440)
138 KOG2055 WD40 repeat protein [G 99.9 7.3E-24 1.6E-28 164.8 21.1 225 63-301 213-448 (514)
139 KOG0321 WD40 repeat-containing 99.9 3.3E-24 7.1E-29 172.9 19.6 273 8-299 53-371 (720)
140 KOG1408 WD40 repeat protein [F 99.9 3.6E-24 7.7E-29 175.1 19.9 245 2-275 457-714 (1080)
141 KOG2096 WD40 repeat protein [G 99.9 5.7E-24 1.2E-28 158.3 19.2 197 62-273 186-401 (420)
142 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.3E-28 170.5 22.7 239 32-301 32-272 (745)
143 KOG0307 Vesicle coat complex C 99.9 1.2E-24 2.7E-29 185.9 15.6 257 4-277 64-330 (1049)
144 KOG0301 Phospholipase A2-activ 99.9 3.5E-23 7.6E-28 168.4 23.1 210 33-274 79-288 (745)
145 KOG1274 WD40 repeat protein [G 99.9 3.4E-23 7.4E-28 173.4 23.6 227 60-301 10-245 (933)
146 KOG0300 WD40 repeat-containing 99.9 3.3E-24 7.2E-29 159.7 15.5 225 56-297 141-407 (481)
147 KOG2919 Guanine nucleotide-bin 99.9 4.7E-23 1E-27 153.7 20.9 269 7-298 52-350 (406)
148 KOG1009 Chromatin assembly com 99.9 1.5E-23 3.2E-28 160.6 17.9 288 4-301 13-355 (434)
149 KOG2445 Nuclear pore complex c 99.9 2.5E-22 5.5E-27 148.8 23.0 233 60-300 10-300 (361)
150 KOG0646 WD40 repeat protein [G 99.9 4.2E-23 9.2E-28 160.7 19.2 230 4-256 81-331 (476)
151 KOG1063 RNA polymerase II elon 99.9 1E-22 2.2E-27 165.7 21.5 273 7-299 319-734 (764)
152 KOG1007 WD repeat protein TSSC 99.9 2E-22 4.3E-27 148.2 19.9 241 21-274 28-289 (370)
153 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 151.2 18.7 195 66-274 26-226 (405)
154 KOG2048 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 161.0 24.2 224 63-300 25-257 (691)
155 KOG1007 WD repeat protein TSSC 99.9 2.7E-22 5.9E-27 147.5 19.8 261 5-276 64-363 (370)
156 KOG4378 Nuclear protein COP1 [ 99.9 7.5E-23 1.6E-27 160.8 17.4 247 35-300 12-262 (673)
157 KOG4328 WD40 protein [Function 99.9 5.7E-23 1.2E-27 159.7 15.9 209 58-274 181-399 (498)
158 KOG1034 Transcriptional repres 99.9 3.1E-22 6.8E-27 149.6 17.9 276 1-301 35-366 (385)
159 KOG1539 WD repeat protein [Gen 99.9 5.2E-22 1.1E-26 164.8 20.3 202 62-275 447-649 (910)
160 KOG2106 Uncharacterized conser 99.9 3.9E-21 8.5E-26 151.4 21.9 226 56-299 361-607 (626)
161 KOG2919 Guanine nucleotide-bin 99.9 1.7E-21 3.7E-26 145.5 18.8 247 1-265 101-361 (406)
162 KOG1034 Transcriptional repres 99.9 1E-21 2.2E-26 146.9 16.7 245 4-274 89-383 (385)
163 KOG1538 Uncharacterized conser 99.9 2.5E-21 5.4E-26 157.7 20.3 262 5-301 13-276 (1081)
164 PRK01742 tolB translocation pr 99.9 1.7E-21 3.7E-26 162.2 19.2 218 59-299 199-426 (429)
165 KOG0290 Conserved WD40 repeat- 99.9 4.5E-21 9.7E-26 141.3 18.2 250 2-270 94-361 (364)
166 KOG0294 WD40 repeat-containing 99.9 2.5E-20 5.4E-25 138.8 20.9 209 77-296 3-257 (362)
167 KOG0649 WD40 repeat protein [G 99.9 6.3E-20 1.4E-24 132.1 22.0 245 6-274 12-274 (325)
168 KOG1445 Tumor-specific antigen 99.9 1.3E-21 2.8E-26 158.5 14.8 240 32-276 600-846 (1012)
169 KOG0650 WD40 repeat nucleolar 99.9 1.3E-21 2.7E-26 157.1 14.5 227 55-298 392-660 (733)
170 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-21 2.4E-26 156.3 13.5 244 33-282 314-569 (577)
171 KOG0321 WD40 repeat-containing 99.9 6.1E-20 1.3E-24 148.5 21.7 254 3-276 99-393 (720)
172 PRK11028 6-phosphogluconolacto 99.9 2E-18 4.3E-23 139.7 30.0 247 5-274 35-304 (330)
173 KOG1523 Actin-related protein 99.9 5.3E-20 1.1E-24 137.4 17.7 227 4-255 10-260 (361)
174 KOG1587 Cytoplasmic dynein int 99.9 2.3E-19 4.9E-24 149.2 23.2 258 3-275 241-517 (555)
175 KOG0303 Actin-binding protein 99.9 4.8E-20 1E-24 141.2 17.4 213 3-236 80-298 (472)
176 PRK11028 6-phosphogluconolacto 99.9 1.9E-18 4.1E-23 139.8 27.7 253 33-301 10-286 (330)
177 PRK03629 tolB translocation pr 99.9 5.6E-19 1.2E-23 146.9 24.9 221 60-298 195-427 (429)
178 KOG2139 WD40 repeat protein [G 99.9 5.1E-19 1.1E-23 134.3 21.5 249 6-277 100-386 (445)
179 KOG2110 Uncharacterized conser 99.9 9.9E-19 2.1E-23 133.0 22.8 224 63-301 5-231 (391)
180 KOG0322 G-protein beta subunit 99.8 5.8E-20 1.3E-24 133.7 14.1 155 113-273 151-322 (323)
181 KOG1009 Chromatin assembly com 99.8 1.1E-19 2.3E-24 139.7 16.1 229 63-298 13-292 (434)
182 KOG0771 Prolactin regulatory e 99.8 7.3E-20 1.6E-24 141.3 15.0 195 67-275 148-355 (398)
183 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-17 3.7E-22 138.8 30.0 263 4-297 65-337 (466)
184 KOG0644 Uncharacterized conser 99.8 1.2E-20 2.6E-25 157.1 9.6 232 56-301 183-451 (1113)
185 KOG0649 WD40 repeat protein [G 99.8 2E-18 4.4E-23 124.4 19.7 221 63-299 10-257 (325)
186 KOG0650 WD40 repeat nucleolar 99.8 5.4E-19 1.2E-23 142.3 18.3 199 59-271 517-732 (733)
187 PRK05137 tolB translocation pr 99.8 3.3E-18 7.2E-23 143.0 23.9 236 37-298 182-432 (435)
188 KOG1524 WD40 repeat-containing 99.8 4.6E-19 1E-23 141.0 15.7 191 52-271 93-283 (737)
189 KOG1188 WD40 repeat protein [G 99.8 6.8E-19 1.5E-23 132.5 15.7 224 33-274 48-346 (376)
190 KOG1524 WD40 repeat-containing 99.8 2.8E-19 6.1E-24 142.3 14.0 225 61-299 12-238 (737)
191 PRK02889 tolB translocation pr 99.8 3.6E-18 7.7E-23 142.2 21.4 238 37-299 176-425 (427)
192 PRK04922 tolB translocation pr 99.8 8.4E-18 1.8E-22 140.4 23.0 222 59-298 199-432 (433)
193 KOG3881 Uncharacterized conser 99.8 1.2E-17 2.6E-22 128.1 20.5 224 61-299 103-342 (412)
194 KOG1538 Uncharacterized conser 99.8 2E-18 4.4E-23 141.0 17.1 234 4-275 53-294 (1081)
195 KOG0642 Cell-cycle nuclear pro 99.8 3.6E-19 7.9E-24 142.1 12.5 238 56-300 287-543 (577)
196 COG2319 FOG: WD40 repeat [Gene 99.8 5.7E-17 1.2E-21 135.6 26.5 229 58-300 60-296 (466)
197 KOG2394 WD40 protein DMR-N9 [G 99.8 8.6E-18 1.9E-22 133.8 18.9 174 72-254 182-384 (636)
198 KOG1272 WD40-repeat-containing 99.8 7.1E-20 1.5E-24 143.0 6.8 218 63-300 129-346 (545)
199 KOG1523 Actin-related protein 99.8 9.3E-18 2E-22 125.5 17.5 206 63-277 10-239 (361)
200 KOG1587 Cytoplasmic dynein int 99.8 7.3E-17 1.6E-21 134.4 24.2 250 36-301 223-499 (555)
201 KOG1310 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 138.3 13.6 218 54-281 41-310 (758)
202 KOG2139 WD40 repeat protein [G 99.8 1.8E-16 3.9E-21 120.7 22.4 251 4-274 140-431 (445)
203 KOG2394 WD40 protein DMR-N9 [G 99.8 2.6E-17 5.6E-22 131.1 18.3 220 66-298 126-384 (636)
204 KOG1963 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 133.5 23.8 248 4-276 205-540 (792)
205 PRK01742 tolB translocation pr 99.8 1.9E-17 4E-22 138.1 17.8 195 84-301 183-384 (429)
206 PF02239 Cytochrom_D1: Cytochr 99.8 7.4E-16 1.6E-20 124.7 26.4 223 65-301 38-328 (369)
207 KOG2110 Uncharacterized conser 99.8 9.5E-16 2.1E-20 117.0 24.6 236 5-277 6-251 (391)
208 KOG1188 WD40 repeat protein [G 99.8 4E-17 8.7E-22 123.1 16.6 196 76-282 41-250 (376)
209 PF08662 eIF2A: Eukaryotic tra 99.8 2.5E-16 5.4E-21 116.3 20.7 156 116-280 9-184 (194)
210 KOG1272 WD40-repeat-containing 99.8 1.7E-18 3.8E-23 135.4 9.5 253 7-298 132-389 (545)
211 KOG1445 Tumor-specific antigen 99.8 3.3E-17 7.1E-22 133.3 16.7 219 57-277 73-296 (1012)
212 KOG4227 WD40 repeat protein [G 99.8 2.1E-16 4.6E-21 121.6 18.9 251 2-274 54-387 (609)
213 PRK00178 tolB translocation pr 99.8 1.1E-15 2.4E-20 128.1 25.0 237 38-299 180-428 (430)
214 PRK01029 tolB translocation pr 99.8 1.5E-15 3.2E-20 126.0 25.2 242 37-300 165-426 (428)
215 PRK02889 tolB translocation pr 99.8 1.4E-16 3E-21 132.8 18.8 179 111-301 194-383 (427)
216 KOG4227 WD40 repeat protein [G 99.8 9.7E-17 2.1E-21 123.5 16.3 221 53-278 46-278 (609)
217 KOG1240 Protein kinase contain 99.8 1.4E-15 3.1E-20 132.1 25.1 269 1-279 1045-1339(1431)
218 PRK05137 tolB translocation pr 99.8 4.7E-16 1E-20 130.2 21.9 198 86-301 183-389 (435)
219 KOG1517 Guanine nucleotide bin 99.7 1.2E-15 2.6E-20 130.8 23.9 273 7-298 1067-1361(1387)
220 PRK04792 tolB translocation pr 99.7 1.7E-15 3.8E-20 126.6 23.5 221 60-298 214-446 (448)
221 KOG1517 Guanine nucleotide bin 99.7 4.9E-16 1.1E-20 133.1 20.2 253 5-277 1110-1384(1387)
222 KOG2111 Uncharacterized conser 99.7 1.5E-14 3.1E-19 108.6 24.9 193 20-233 59-257 (346)
223 PRK04922 tolB translocation pr 99.7 5.9E-16 1.3E-20 129.4 19.5 197 85-301 184-391 (433)
224 TIGR02800 propeller_TolB tol-p 99.7 2.9E-15 6.4E-20 125.3 23.4 218 59-297 185-417 (417)
225 PRK03629 tolB translocation pr 99.7 1.5E-15 3.3E-20 126.4 21.4 221 4-254 198-427 (429)
226 KOG1963 WD40 repeat protein [G 99.7 1.6E-15 3.6E-20 127.4 21.3 220 56-282 50-383 (792)
227 KOG0644 Uncharacterized conser 99.7 3.4E-17 7.3E-22 136.9 11.0 240 5-278 191-472 (1113)
228 PF08662 eIF2A: Eukaryotic tra 99.7 2.1E-15 4.6E-20 111.3 19.4 158 67-238 9-184 (194)
229 PF10282 Lactonase: Lactonase, 99.7 3.7E-13 7.9E-18 109.2 33.9 255 33-296 60-345 (345)
230 KOG4497 Uncharacterized conser 99.7 1.6E-15 3.5E-20 114.3 17.9 253 10-299 14-372 (447)
231 KOG4497 Uncharacterized conser 99.7 1.1E-14 2.4E-19 109.8 20.9 261 7-301 51-415 (447)
232 KOG2111 Uncharacterized conser 99.7 1.9E-14 4.2E-19 107.9 21.7 237 5-276 6-258 (346)
233 PF10282 Lactonase: Lactonase, 99.7 5E-13 1.1E-17 108.5 31.6 255 33-301 11-304 (345)
234 KOG0322 G-protein beta subunit 99.7 4.6E-16 9.9E-21 113.6 11.8 171 4-183 150-322 (323)
235 KOG2041 WD40 repeat protein [G 99.7 7.5E-15 1.6E-19 121.4 19.8 275 2-300 12-320 (1189)
236 KOG2321 WD40 repeat protein [G 99.7 3.9E-15 8.4E-20 119.9 17.4 231 61-300 49-325 (703)
237 TIGR02800 propeller_TolB tol-p 99.7 3.1E-14 6.6E-19 119.2 21.3 196 86-301 171-377 (417)
238 KOG1354 Serine/threonine prote 99.7 3.2E-14 6.9E-19 107.9 18.5 252 6-276 27-361 (433)
239 PRK00178 tolB translocation pr 99.7 5.1E-14 1.1E-18 118.1 21.8 198 86-301 180-386 (430)
240 COG2706 3-carboxymuconate cycl 99.6 5.9E-12 1.3E-16 96.6 30.2 274 5-297 40-345 (346)
241 KOG1240 Protein kinase contain 99.6 3.3E-14 7.2E-19 123.8 19.7 226 52-282 1037-1281(1431)
242 PRK04792 tolB translocation pr 99.6 1.1E-13 2.3E-18 115.9 20.4 198 86-301 199-405 (448)
243 PRK01029 tolB translocation pr 99.6 2.2E-13 4.7E-18 113.3 21.9 227 6-256 186-426 (428)
244 KOG1310 WD40 repeat protein [G 99.6 4.4E-15 9.4E-20 119.1 11.0 161 108-273 46-230 (758)
245 KOG2321 WD40 repeat protein [G 99.6 2.4E-13 5.1E-18 109.8 20.0 185 78-275 148-344 (703)
246 KOG1334 WD40 repeat protein [G 99.6 2.5E-14 5.3E-19 113.1 14.1 268 4-298 142-446 (559)
247 KOG0974 WD-repeat protein WDR6 99.6 6.3E-14 1.4E-18 120.1 15.6 199 66-275 90-289 (967)
248 COG4946 Uncharacterized protei 99.6 2.4E-12 5.1E-17 102.1 22.6 144 61-214 357-505 (668)
249 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.4E-11 5.2E-16 96.6 27.0 210 71-282 53-338 (352)
250 COG2706 3-carboxymuconate cycl 99.6 7.7E-11 1.7E-15 90.6 27.9 255 34-301 15-303 (346)
251 KOG4547 WD40 repeat-containing 99.5 1.2E-12 2.6E-17 106.0 18.9 192 72-275 2-221 (541)
252 PRK04043 tolB translocation pr 99.5 7.9E-12 1.7E-16 103.3 24.0 199 65-280 189-406 (419)
253 COG4946 Uncharacterized protei 99.5 1.1E-11 2.3E-16 98.4 23.1 245 33-301 244-501 (668)
254 KOG4547 WD40 repeat-containing 99.5 1.6E-12 3.4E-17 105.4 18.8 169 122-299 3-195 (541)
255 KOG3881 Uncharacterized conser 99.5 1.7E-12 3.6E-17 100.2 17.3 212 33-255 123-342 (412)
256 KOG2315 Predicted translation 99.5 9.1E-12 2E-16 100.5 21.0 202 62-276 164-392 (566)
257 KOG0280 Uncharacterized conser 99.5 5.6E-12 1.2E-16 93.9 18.2 244 19-276 24-286 (339)
258 KOG0280 Uncharacterized conser 99.5 6.1E-12 1.3E-16 93.8 17.8 254 5-276 70-335 (339)
259 KOG1354 Serine/threonine prote 99.5 1.7E-12 3.6E-17 98.8 14.2 219 2-234 82-361 (433)
260 PRK04043 tolB translocation pr 99.5 2.9E-11 6.3E-16 100.0 22.8 176 114-301 189-380 (419)
261 PF02239 Cytochrom_D1: Cytochr 99.5 1.7E-11 3.6E-16 99.6 20.8 170 125-301 6-184 (369)
262 KOG1334 WD40 repeat protein [G 99.5 7.6E-13 1.6E-17 104.9 12.1 209 56-274 135-366 (559)
263 KOG1064 RAVE (regulator of V-A 99.5 3E-13 6.5E-18 122.0 10.3 203 60-286 2205-2410(2439)
264 KOG0974 WD-repeat protein WDR6 99.4 4.4E-12 9.6E-17 109.1 15.1 150 69-233 139-289 (967)
265 KOG1409 Uncharacterized conser 99.4 2.9E-11 6.2E-16 92.2 17.6 200 5-232 69-270 (404)
266 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.3E-10 7.1E-15 90.3 24.2 199 85-301 27-311 (352)
267 KOG2314 Translation initiation 99.4 1.8E-10 3.9E-15 93.3 21.0 228 64-301 250-550 (698)
268 COG5354 Uncharacterized protei 99.4 3.8E-10 8.3E-15 90.4 22.6 267 3-301 31-372 (561)
269 PLN02919 haloacid dehalogenase 99.4 1.1E-09 2.5E-14 100.3 29.0 209 64-278 624-892 (1057)
270 KOG2315 Predicted translation 99.4 3.3E-10 7.1E-15 91.8 22.1 212 67-301 129-367 (566)
271 KOG3914 WD repeat protein WDR4 99.4 1.1E-11 2.5E-16 96.1 12.5 165 65-240 64-231 (390)
272 PF15492 Nbas_N: Neuroblastoma 99.4 1.8E-09 4E-14 80.8 23.6 211 62-282 42-267 (282)
273 KOG4532 WD40-like repeat conta 99.4 6.8E-10 1.5E-14 82.1 19.8 186 77-275 130-332 (344)
274 KOG4532 WD40-like repeat conta 99.3 5.8E-10 1.3E-14 82.5 18.2 222 68-300 72-314 (344)
275 COG5170 CDC55 Serine/threonine 99.3 1.4E-10 3.1E-15 87.5 15.4 253 3-274 25-367 (460)
276 PF08450 SGL: SMP-30/Gluconola 99.3 7.7E-09 1.7E-13 80.2 25.6 211 68-300 4-237 (246)
277 KOG1409 Uncharacterized conser 99.3 4.1E-10 8.9E-15 86.0 16.8 219 52-286 13-239 (404)
278 KOG4190 Uncharacterized conser 99.3 1.8E-11 3.8E-16 99.2 9.7 215 55-277 727-951 (1034)
279 KOG0309 Conserved WD40 repeat- 99.3 3.3E-11 7.3E-16 100.6 11.4 248 7-275 70-340 (1081)
280 COG5354 Uncharacterized protei 99.3 5.2E-10 1.1E-14 89.7 17.4 227 60-301 29-287 (561)
281 KOG2041 WD40 repeat protein [G 99.3 2.4E-10 5.1E-15 95.5 15.9 228 63-301 14-271 (1189)
282 PLN02919 haloacid dehalogenase 99.3 9.3E-09 2E-13 94.4 27.5 228 66-301 570-871 (1057)
283 KOG2314 Translation initiation 99.3 5.9E-10 1.3E-14 90.3 17.4 223 65-301 212-458 (698)
284 PF04762 IKI3: IKI3 family; I 99.3 9.9E-09 2.1E-13 92.6 27.0 246 3-272 74-377 (928)
285 PF04762 IKI3: IKI3 family; I 99.3 7.7E-09 1.7E-13 93.3 26.3 273 5-299 22-359 (928)
286 KOG1064 RAVE (regulator of V-A 99.2 6.8E-11 1.5E-15 107.4 10.7 175 33-240 2228-2406(2439)
287 KOG3914 WD repeat protein WDR4 99.2 2.8E-10 6.1E-15 88.5 11.9 155 19-193 74-232 (390)
288 KOG0309 Conserved WD40 repeat- 99.2 1.3E-10 2.9E-15 97.1 10.4 225 63-300 24-257 (1081)
289 KOG1912 WD40 repeat protein [G 99.2 2E-08 4.3E-13 84.9 22.4 237 8-275 19-305 (1062)
290 PF07433 DUF1513: Protein of u 99.2 7.2E-08 1.6E-12 74.5 23.2 210 65-282 6-255 (305)
291 PF08450 SGL: SMP-30/Gluconola 99.2 2.2E-07 4.7E-12 72.1 26.5 224 9-263 4-244 (246)
292 KOG4714 Nucleoporin [Nuclear s 99.2 2.9E-09 6.3E-14 78.5 14.6 211 7-233 39-255 (319)
293 COG5170 CDC55 Serine/threonine 99.2 7.1E-10 1.5E-14 83.8 11.7 208 63-276 26-311 (460)
294 KOG1832 HIV-1 Vpr-binding prot 99.1 5.3E-11 1.2E-15 101.5 5.3 213 57-300 1095-1313(1516)
295 KOG2695 WD40 repeat protein [G 99.1 5.7E-10 1.2E-14 85.3 9.1 151 79-243 228-387 (425)
296 KOG4190 Uncharacterized conser 99.1 6.9E-10 1.5E-14 90.2 8.2 167 109-280 732-912 (1034)
297 PF11768 DUF3312: Protein of u 99.0 5.6E-06 1.2E-10 68.7 28.3 112 157-275 208-330 (545)
298 KOG0882 Cyclophilin-related pe 99.0 5.8E-09 1.3E-13 82.7 10.7 211 62-283 8-240 (558)
299 KOG1920 IkappaB kinase complex 99.0 1.7E-07 3.7E-12 83.2 20.6 203 63-277 68-325 (1265)
300 KOG2695 WD40 repeat protein [G 99.0 3.4E-09 7.3E-14 81.2 8.9 169 119-297 218-401 (425)
301 PF13360 PQQ_2: PQQ-like domai 98.9 8.8E-07 1.9E-11 68.4 21.4 188 74-280 35-236 (238)
302 TIGR03300 assembly_YfgL outer 98.9 4.8E-07 1E-11 74.9 21.0 183 76-271 191-376 (377)
303 COG0823 TolB Periplasmic compo 98.9 2.3E-07 5E-12 76.7 18.6 191 59-265 188-390 (425)
304 KOG1275 PAB-dependent poly(A) 98.9 2.6E-08 5.6E-13 85.7 13.2 183 74-273 146-341 (1118)
305 PF00400 WD40: WD domain, G-be 98.9 5.7E-09 1.2E-13 55.5 6.0 39 234-272 1-39 (39)
306 KOG1645 RING-finger-containing 98.9 7.7E-08 1.7E-12 75.4 13.8 81 58-146 188-270 (463)
307 TIGR03300 assembly_YfgL outer 98.9 1.4E-06 3E-11 72.2 22.4 193 75-283 145-347 (377)
308 KOG2066 Vacuolar assembly/sort 98.9 1.6E-07 3.4E-12 80.0 16.5 180 7-232 42-233 (846)
309 KOG1912 WD40 repeat protein [G 98.9 3E-07 6.4E-12 78.1 18.0 221 65-301 17-285 (1062)
310 PF07433 DUF1513: Protein of u 98.9 1.1E-05 2.3E-10 62.8 24.9 233 8-272 8-283 (305)
311 PF00400 WD40: WD domain, G-be 98.9 6.4E-09 1.4E-13 55.3 5.4 38 145-182 2-39 (39)
312 PF00930 DPPIV_N: Dipeptidyl p 98.9 6.8E-06 1.5E-10 67.3 25.6 231 63-301 42-340 (353)
313 KOG4714 Nucleoporin [Nuclear s 98.9 1.7E-08 3.7E-13 74.5 8.2 148 123-275 100-255 (319)
314 KOG0882 Cyclophilin-related pe 98.8 1.6E-07 3.4E-12 74.8 13.9 232 33-282 28-313 (558)
315 KOG2114 Vacuolar assembly/sort 98.8 1.5E-06 3.2E-11 74.8 19.3 205 69-286 29-255 (933)
316 KOG1920 IkappaB kinase complex 98.8 7E-06 1.5E-10 73.4 23.7 204 63-272 109-363 (1265)
317 COG3391 Uncharacterized conser 98.8 7.1E-06 1.5E-10 67.7 22.7 207 64-282 74-291 (381)
318 PF11768 DUF3312: Protein of u 98.8 1.8E-07 3.9E-12 77.2 12.7 118 64-187 206-332 (545)
319 PF00930 DPPIV_N: Dipeptidyl p 98.8 2.4E-06 5.3E-11 69.9 19.0 217 72-300 1-292 (353)
320 KOG2066 Vacuolar assembly/sort 98.8 5.5E-07 1.2E-11 76.7 15.2 151 113-285 40-198 (846)
321 PF06433 Me-amine-dh_H: Methyl 98.7 2.8E-05 6.2E-10 61.2 22.7 233 38-284 18-330 (342)
322 KOG1832 HIV-1 Vpr-binding prot 98.7 1.6E-08 3.4E-13 86.9 5.2 214 3-262 1100-1319(1516)
323 COG0823 TolB Periplasmic compo 98.7 1.6E-06 3.4E-11 71.8 16.4 159 134-301 173-338 (425)
324 KOG2114 Vacuolar assembly/sort 98.7 1.3E-05 2.7E-10 69.3 21.4 202 19-241 35-252 (933)
325 PF14583 Pectate_lyase22: Olig 98.7 4E-05 8.6E-10 61.6 22.8 253 33-301 56-363 (386)
326 PF13360 PQQ_2: PQQ-like domai 98.6 5.3E-06 1.1E-10 64.0 16.5 181 84-279 2-196 (238)
327 PF15492 Nbas_N: Neuroblastoma 98.6 2.7E-05 5.8E-10 59.0 19.1 209 8-244 47-271 (282)
328 KOG1008 Uncharacterized conser 98.6 1.5E-08 3.2E-13 84.0 2.0 198 63-274 56-275 (783)
329 KOG3617 WD40 and TPR repeat-co 98.6 2.5E-06 5.4E-11 73.6 14.6 112 64-184 16-131 (1416)
330 PF06977 SdiA-regulated: SdiA- 98.6 7.7E-05 1.7E-09 57.1 20.5 200 59-271 17-247 (248)
331 PF06977 SdiA-regulated: SdiA- 98.6 0.0001 2.2E-09 56.5 21.1 202 5-229 22-247 (248)
332 PRK11138 outer membrane biogen 98.6 1.7E-05 3.7E-10 66.1 18.5 184 77-273 207-393 (394)
333 PRK02888 nitrous-oxide reducta 98.6 1.3E-05 2.8E-10 68.2 17.6 184 71-275 200-405 (635)
334 KOG1008 Uncharacterized conser 98.5 4.3E-08 9.3E-13 81.3 2.6 207 6-232 58-275 (783)
335 PF05694 SBP56: 56kDa selenium 98.5 0.00019 4.2E-09 58.3 21.8 241 33-276 35-344 (461)
336 PF08596 Lgl_C: Lethal giant l 98.5 4.9E-05 1.1E-09 62.5 18.5 217 65-282 3-298 (395)
337 PRK11138 outer membrane biogen 98.4 3.7E-05 8E-10 64.1 17.6 193 75-279 69-279 (394)
338 COG3391 Uncharacterized conser 98.4 0.00057 1.2E-08 56.6 24.3 222 65-301 32-265 (381)
339 KOG4640 Anaphase-promoting com 98.4 1.5E-06 3.2E-11 72.4 8.6 94 113-207 21-115 (665)
340 KOG3617 WD40 and TPR repeat-co 98.4 2.4E-05 5.3E-10 67.8 15.9 70 66-142 62-131 (1416)
341 PRK02888 nitrous-oxide reducta 98.4 1.8E-05 4E-10 67.3 14.9 135 120-263 284-450 (635)
342 COG3386 Gluconolactonase [Carb 98.4 0.00055 1.2E-08 54.4 22.3 188 66-264 68-275 (307)
343 KOG3621 WD40 repeat-containing 98.4 1.1E-05 2.4E-10 68.2 12.6 118 62-185 32-155 (726)
344 PF08596 Lgl_C: Lethal giant l 98.3 0.00046 9.9E-09 57.0 21.3 205 59-265 82-327 (395)
345 PRK13616 lipoprotein LpqB; Pro 98.3 0.0002 4.2E-09 62.3 19.8 187 64-269 350-563 (591)
346 cd00216 PQQ_DH Dehydrogenases 98.3 0.0011 2.4E-08 56.8 24.1 192 84-283 174-433 (488)
347 KOG4640 Anaphase-promoting com 98.3 5.2E-06 1.1E-10 69.2 9.2 93 199-298 22-115 (665)
348 KOG3621 WD40 repeat-containing 98.3 0.00021 4.6E-09 60.8 18.1 150 19-185 45-198 (726)
349 PF02897 Peptidase_S9_N: Proly 98.3 0.0018 3.9E-08 54.5 24.4 222 65-299 125-381 (414)
350 KOG1275 PAB-dependent poly(A) 98.3 2E-05 4.4E-10 68.6 12.4 167 123-301 146-325 (1118)
351 KOG1645 RING-finger-containing 98.3 9.8E-06 2.1E-10 64.0 9.6 94 136-235 175-269 (463)
352 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0018 3.9E-08 54.1 25.3 138 119-282 185-322 (410)
353 PF04053 Coatomer_WDAD: Coatom 98.3 0.00011 2.5E-09 61.3 16.3 168 59-255 28-207 (443)
354 PF04053 Coatomer_WDAD: Coatom 98.3 0.0012 2.5E-08 55.4 22.1 186 63-276 68-264 (443)
355 COG3386 Gluconolactonase [Carb 98.1 0.0011 2.3E-08 52.8 18.8 211 68-297 29-263 (307)
356 PF08553 VID27: VID27 cytoplas 98.1 0.0006 1.3E-08 60.5 18.6 144 123-273 492-646 (794)
357 KOG1897 Damage-specific DNA bi 98.1 0.0059 1.3E-07 54.5 25.6 132 156-296 776-921 (1096)
358 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.002 4.3E-08 48.6 21.4 104 74-185 62-166 (354)
359 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0048 1E-07 51.6 23.2 179 64-257 81-272 (410)
360 PRK13616 lipoprotein LpqB; Pro 98.1 0.0003 6.6E-09 61.1 15.5 137 155-301 350-509 (591)
361 cd00216 PQQ_DH Dehydrogenases 98.1 0.0026 5.6E-08 54.7 20.9 201 75-282 61-327 (488)
362 COG3490 Uncharacterized protei 98.0 0.0022 4.8E-08 49.1 17.1 211 65-281 69-317 (366)
363 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0034 7.3E-08 47.4 18.9 123 75-207 23-145 (354)
364 PF08553 VID27: VID27 cytoplas 98.0 0.00064 1.4E-08 60.3 16.1 133 83-231 502-646 (794)
365 PF03178 CPSF_A: CPSF A subuni 98.0 0.0029 6.3E-08 51.2 19.0 209 3-227 22-260 (321)
366 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0012 2.5E-08 43.2 12.7 101 157-270 2-110 (111)
367 PF03178 CPSF_A: CPSF A subuni 97.9 0.0045 9.7E-08 50.2 19.4 184 75-271 42-262 (321)
368 smart00320 WD40 WD40 repeats. 97.9 6.1E-05 1.3E-09 39.0 5.4 38 235-272 3-40 (40)
369 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0006 1.3E-08 44.5 10.7 100 66-179 2-109 (111)
370 PF00780 CNH: CNH domain; Int 97.9 0.0082 1.8E-07 47.4 21.1 123 73-207 5-148 (275)
371 PF06433 Me-amine-dh_H: Methyl 97.9 0.0085 1.9E-07 47.7 18.8 162 76-244 148-332 (342)
372 PF14583 Pectate_lyase22: Olig 97.9 0.0083 1.8E-07 48.7 19.0 180 117-301 40-250 (386)
373 PF02897 Peptidase_S9_N: Proly 97.8 0.015 3.3E-07 49.0 25.9 206 68-280 174-410 (414)
374 smart00320 WD40 WD40 repeats. 97.8 6.8E-05 1.5E-09 38.8 4.5 36 147-182 5-40 (40)
375 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0054 1.2E-07 47.7 16.1 148 114-266 25-187 (253)
376 PHA02713 hypothetical protein; 97.7 0.0091 2E-07 52.2 18.3 222 38-282 273-541 (557)
377 KOG3630 Nuclear pore complex, 97.6 0.0012 2.5E-08 59.6 11.7 149 64-213 101-259 (1405)
378 COG3490 Uncharacterized protei 97.6 0.012 2.7E-07 45.2 15.3 192 69-274 119-348 (366)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.039 8.4E-07 47.9 19.8 199 75-279 69-338 (527)
380 PF14870 PSII_BNR: Photosynthe 97.5 0.03 6.6E-07 44.4 19.4 153 61-229 142-301 (302)
381 KOG2395 Protein involved in va 97.5 0.0034 7.5E-08 52.1 12.4 144 73-232 343-500 (644)
382 TIGR03074 PQQ_membr_DH membran 97.5 0.071 1.5E-06 48.2 21.7 207 75-282 194-485 (764)
383 KOG4499 Ca2+-binding protein R 97.5 0.023 5E-07 42.4 15.8 136 155-297 109-262 (310)
384 KOG2395 Protein involved in va 97.5 0.0024 5.2E-08 53.0 11.1 145 122-274 343-500 (644)
385 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.066 1.4E-06 46.5 21.8 166 117-283 238-499 (527)
386 KOG2079 Vacuolar assembly/sort 97.4 0.00077 1.7E-08 60.4 8.2 102 165-273 98-202 (1206)
387 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00076 1.7E-08 36.8 5.3 34 112-146 11-44 (47)
388 PRK10115 protease 2; Provision 97.4 0.098 2.1E-06 47.1 21.3 113 114-231 128-254 (686)
389 KOG4499 Ca2+-binding protein R 97.3 0.037 8.1E-07 41.4 15.5 136 63-208 108-264 (310)
390 PF12894 Apc4_WD40: Anaphase-p 97.3 0.001 2.2E-08 36.3 5.1 33 244-277 11-43 (47)
391 PF15390 DUF4613: Domain of un 97.3 0.019 4.2E-07 48.6 14.4 125 60-184 53-186 (671)
392 KOG2444 WD40 repeat protein [G 97.3 0.00088 1.9E-08 49.4 5.9 142 127-275 33-178 (238)
393 PF00780 CNH: CNH domain; Int 97.3 0.038 8.3E-07 43.7 15.9 147 123-280 6-171 (275)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 97.2 0.093 2E-06 43.7 25.8 95 68-163 6-117 (415)
395 KOG2079 Vacuolar assembly/sort 97.2 0.0019 4.2E-08 58.0 8.4 102 74-183 98-202 (1206)
396 PF15390 DUF4613: Domain of un 97.2 0.023 5E-07 48.2 14.0 116 113-232 57-186 (671)
397 COG3204 Uncharacterized protei 97.2 0.03 6.4E-07 43.4 13.4 120 151-275 82-211 (316)
398 PF05096 Glu_cyclase_2: Glutam 97.2 0.05 1.1E-06 41.9 14.6 118 156-282 46-165 (264)
399 KOG1916 Nuclear protein, conta 97.2 0.0011 2.3E-08 58.5 6.2 210 58-275 127-375 (1283)
400 COG3204 Uncharacterized protei 97.0 0.1 2.2E-06 40.6 19.0 191 60-261 82-300 (316)
401 KOG4441 Proteins containing BT 97.0 0.21 4.4E-06 44.0 20.7 238 19-280 285-552 (571)
402 PF05694 SBP56: 56kDa selenium 96.9 0.17 3.8E-06 41.8 18.4 190 66-263 132-392 (461)
403 PF12234 Rav1p_C: RAVE protein 96.9 0.051 1.1E-06 47.5 14.1 109 117-232 34-156 (631)
404 PF05096 Glu_cyclase_2: Glutam 96.9 0.12 2.7E-06 39.8 21.5 175 115-300 47-242 (264)
405 TIGR03118 PEPCTERM_chp_1 conse 96.9 0.15 3.2E-06 40.0 22.0 231 65-298 24-307 (336)
406 PRK10115 protease 2; Provision 96.9 0.33 7.1E-06 43.9 26.1 197 64-276 127-348 (686)
407 KOG2444 WD40 repeat protein [G 96.9 0.0087 1.9E-07 44.4 7.8 106 123-233 69-178 (238)
408 KOG4441 Proteins containing BT 96.8 0.24 5.2E-06 43.5 17.2 154 20-191 334-506 (571)
409 TIGR02604 Piru_Ver_Nterm putat 96.7 0.14 3E-06 42.4 14.9 144 113-263 14-202 (367)
410 TIGR02604 Piru_Ver_Nterm putat 96.7 0.17 3.7E-06 41.9 15.3 141 64-211 14-197 (367)
411 PF14870 PSII_BNR: Photosynthe 96.7 0.23 5E-06 39.6 27.5 262 3-299 15-286 (302)
412 PHA03098 kelch-like protein; P 96.7 0.37 8E-06 42.2 18.1 148 122-279 341-516 (534)
413 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.048 1E-06 45.3 11.6 87 156-242 309-408 (415)
414 PF10214 Rrn6: RNA polymerase 96.6 0.57 1.2E-05 43.0 23.2 175 2-185 77-277 (765)
415 PHA02713 hypothetical protein; 96.6 0.16 3.5E-06 44.6 15.0 177 38-235 321-536 (557)
416 PF12234 Rav1p_C: RAVE protein 96.6 0.1 2.2E-06 45.6 13.3 112 64-183 30-155 (631)
417 PF10647 Gmad1: Lipoprotein Lp 96.6 0.26 5.6E-06 38.4 19.8 139 65-211 25-179 (253)
418 KOG3630 Nuclear pore complex, 96.5 0.048 1.1E-06 49.9 11.4 143 113-262 101-261 (1405)
419 PHA03098 kelch-like protein; P 96.4 0.5 1.1E-05 41.4 17.4 153 20-189 296-469 (534)
420 PF07995 GSDH: Glucose / Sorbo 96.4 0.41 8.8E-06 39.1 23.9 71 199-269 254-330 (331)
421 KOG2280 Vacuolar assembly/sort 96.3 0.48 1E-05 41.8 15.4 200 84-297 63-268 (829)
422 PLN00033 photosystem II stabil 96.2 0.58 1.3E-05 39.1 17.4 145 115-271 241-396 (398)
423 PF08728 CRT10: CRT10; InterP 96.1 0.18 4E-06 44.7 12.6 118 66-183 103-245 (717)
424 PF10168 Nup88: Nuclear pore c 96.1 0.84 1.8E-05 41.3 16.7 80 64-144 85-181 (717)
425 PF10313 DUF2415: Uncharacteri 96.0 0.03 6.4E-07 29.6 4.6 31 113-143 1-34 (43)
426 PF07995 GSDH: Glucose / Sorbo 95.8 0.21 4.5E-06 40.7 11.1 109 65-175 3-134 (331)
427 PF10313 DUF2415: Uncharacteri 95.8 0.05 1.1E-06 28.8 4.9 31 245-275 1-34 (43)
428 PF14781 BBS2_N: Ciliary BBSom 95.6 0.42 9.1E-06 32.6 12.9 118 68-187 3-128 (136)
429 PF10168 Nup88: Nuclear pore c 95.6 0.75 1.6E-05 41.6 14.5 73 113-186 85-181 (717)
430 PRK13684 Ycf48-like protein; P 95.5 1.1 2.4E-05 36.6 24.9 151 112-273 172-330 (334)
431 COG5167 VID27 Protein involved 95.3 0.52 1.1E-05 39.8 11.6 197 19-232 419-632 (776)
432 PF07569 Hira: TUP1-like enhan 95.3 0.4 8.7E-06 36.4 10.4 68 120-188 18-99 (219)
433 PF12768 Rax2: Cortical protei 95.2 1.2 2.5E-05 35.3 13.1 104 134-239 16-130 (281)
434 PHA02790 Kelch-like protein; P 95.2 1.9 4.1E-05 37.3 17.0 144 122-278 317-474 (480)
435 PF08728 CRT10: CRT10; InterP 94.9 2.7 5.8E-05 37.8 15.9 156 75-231 49-245 (717)
436 TIGR03606 non_repeat_PQQ dehyd 94.9 1.1 2.5E-05 37.9 12.8 62 63-124 29-90 (454)
437 KOG2377 Uncharacterized conser 94.9 1.6 3.4E-05 36.6 12.9 137 68-211 27-167 (657)
438 KOG1897 Damage-specific DNA bi 94.9 3.2 6.8E-05 38.3 28.4 249 4-274 353-613 (1096)
439 PF07569 Hira: TUP1-like enhan 94.9 0.2 4.3E-06 38.1 7.6 71 71-143 18-96 (219)
440 PF13449 Phytase-like: Esteras 94.8 1.8 4E-05 35.2 18.6 148 63-211 19-228 (326)
441 PRK13684 Ycf48-like protein; P 94.6 2.1 4.5E-05 35.1 28.9 114 154-277 172-290 (334)
442 PF10214 Rrn6: RNA polymerase 94.6 3.7 8E-05 37.9 23.4 166 61-233 77-277 (765)
443 KOG2247 WD40 repeat-containing 94.6 0.0053 1.1E-07 50.7 -1.5 134 158-300 38-171 (615)
444 COG4590 ABC-type uncharacteriz 94.4 0.37 8E-06 40.0 8.3 165 62-236 219-390 (733)
445 KOG2377 Uncharacterized conser 94.3 2.7 5.9E-05 35.2 19.5 118 63-185 66-186 (657)
446 COG5167 VID27 Protein involved 94.3 1.3 2.7E-05 37.7 11.3 146 120-274 475-632 (776)
447 PHA02790 Kelch-like protein; P 94.3 3.3 7.1E-05 35.9 17.5 149 20-189 273-428 (480)
448 COG5290 IkappaB kinase complex 94.1 3.1 6.7E-05 37.5 13.7 91 158-256 250-348 (1243)
449 KOG4460 Nuclear pore complex, 94.1 1.1 2.3E-05 38.2 10.5 76 114-189 105-203 (741)
450 KOG4460 Nuclear pore complex, 94.0 1.3 2.8E-05 37.7 10.9 77 200-281 106-205 (741)
451 PF12657 TFIIIC_delta: Transcr 93.7 0.69 1.5E-05 33.7 8.2 31 245-275 86-122 (173)
452 PF13449 Phytase-like: Esteras 93.6 3.4 7.4E-05 33.7 16.4 149 112-261 19-231 (326)
453 KOG1916 Nuclear protein, conta 93.5 0.41 8.9E-06 43.2 7.6 161 4-185 180-375 (1283)
454 COG4257 Vgb Streptogramin lyas 93.4 3 6.5E-05 32.6 14.4 155 114-276 63-220 (353)
455 PF11715 Nup160: Nucleoporin N 93.2 0.9 2E-05 40.0 9.5 72 122-193 156-257 (547)
456 KOG2247 WD40 repeat-containing 93.2 0.012 2.6E-07 48.7 -1.8 139 62-210 33-172 (615)
457 PF14761 HPS3_N: Hermansky-Pud 93.1 2.8 6.1E-05 31.4 14.0 139 125-273 29-213 (215)
458 TIGR03606 non_repeat_PQQ dehyd 93.1 4.9 0.00011 34.3 15.3 111 155-265 30-166 (454)
459 COG3823 Glutamine cyclotransfe 93.1 2.8 6E-05 31.3 11.5 167 123-300 55-240 (262)
460 PLN00033 photosystem II stabil 92.8 5.1 0.00011 33.6 30.3 132 157-300 241-382 (398)
461 PF07676 PD40: WD40-like Beta 92.7 0.59 1.3E-05 24.1 4.9 29 243-271 7-38 (39)
462 KOG1900 Nuclear pore complex, 92.5 3.7 8E-05 39.1 12.3 137 131-275 96-273 (1311)
463 COG1520 FOG: WD40-like repeat 92.4 5.6 0.00012 33.1 18.3 193 77-282 70-276 (370)
464 PF12657 TFIIIC_delta: Transcr 92.2 3.4 7.4E-05 30.1 10.3 30 156-185 87-122 (173)
465 KOG1983 Tomosyn and related SN 92.1 6 0.00013 37.6 13.5 35 63-97 35-69 (993)
466 PF07676 PD40: WD40-like Beta 91.9 0.91 2E-05 23.3 5.1 29 153-181 7-38 (39)
467 COG1506 DAP2 Dipeptidyl aminop 91.7 9.6 0.00021 34.3 15.1 141 152-301 57-228 (620)
468 COG4257 Vgb Streptogramin lyas 91.6 5.4 0.00012 31.2 16.7 199 64-277 62-265 (353)
469 TIGR02276 beta_rpt_yvtn 40-res 91.4 1.2 2.6E-05 23.2 6.1 40 164-205 1-41 (42)
470 PF11715 Nup160: Nucleoporin N 91.4 1.7 3.6E-05 38.4 9.0 76 73-148 156-254 (547)
471 KOG1900 Nuclear pore complex, 91.0 6.2 0.00013 37.7 12.0 143 32-185 96-273 (1311)
472 PF10395 Utp8: Utp8 family; I 90.7 12 0.00026 33.5 21.7 160 112-281 129-312 (670)
473 PF14761 HPS3_N: Hermansky-Pud 90.6 5.8 0.00013 29.8 13.1 106 167-277 29-166 (215)
474 COG1520 FOG: WD40-like repeat 90.3 9.5 0.00021 31.7 15.1 148 126-281 70-224 (370)
475 TIGR02276 beta_rpt_yvtn 40-res 89.9 1.7 3.7E-05 22.6 5.7 41 207-252 1-41 (42)
476 PF14781 BBS2_N: Ciliary BBSom 89.8 4.9 0.00011 27.6 12.3 114 118-236 4-129 (136)
477 COG5276 Uncharacterized conser 89.3 9.4 0.0002 30.3 21.6 137 64-211 87-227 (370)
478 PF02333 Phytase: Phytase; In 89.3 12 0.00025 31.2 15.4 158 34-192 126-299 (381)
479 TIGR03074 PQQ_membr_DH membran 89.1 19 0.00041 33.3 21.1 162 75-238 260-483 (764)
480 PF07250 Glyoxal_oxid_N: Glyox 88.8 9.4 0.0002 29.6 11.3 141 136-283 48-206 (243)
481 COG4590 ABC-type uncharacteriz 88.0 3.8 8.3E-05 34.4 7.8 156 113-277 221-389 (733)
482 PRK13613 lipoprotein LpqB; Pro 87.3 21 0.00046 31.9 14.8 156 114-274 364-537 (599)
483 PF03088 Str_synth: Strictosid 86.5 4.6 0.0001 25.6 6.0 45 218-263 31-75 (89)
484 PLN02193 nitrile-specifier pro 86.3 21 0.00046 30.9 20.1 150 123-279 228-415 (470)
485 PRK13615 lipoprotein LpqB; Pro 85.9 24 0.00053 31.2 16.1 154 116-275 337-503 (557)
486 KOG1898 Splicing factor 3b, su 85.7 33 0.00071 32.5 23.7 75 4-90 582-668 (1205)
487 TIGR03548 mutarot_permut cycli 85.4 18 0.0004 29.4 17.5 67 74-146 123-198 (323)
488 KOG1520 Predicted alkaloid syn 85.4 20 0.00042 29.7 13.8 154 117-271 69-247 (376)
489 KOG3616 Selective LIM binding 85.4 11 0.00024 34.1 9.5 164 115-289 17-207 (1636)
490 PF05935 Arylsulfotrans: Aryls 85.4 24 0.00052 30.7 15.4 119 160-282 153-309 (477)
491 TIGR03548 mutarot_permut cycli 84.8 20 0.00043 29.2 19.0 65 123-188 72-151 (323)
492 COG1770 PtrB Protease II [Amin 84.0 31 0.00068 30.9 15.1 117 114-234 130-258 (682)
493 PF03088 Str_synth: Strictosid 83.5 9.1 0.0002 24.3 8.5 37 173-211 34-70 (89)
494 PF01436 NHL: NHL repeat; Int 83.4 3.5 7.5E-05 19.4 3.9 25 247-271 4-28 (28)
495 smart00564 PQQ beta-propeller 82.6 3.4 7.4E-05 20.0 3.5 24 126-149 8-31 (33)
496 TIGR02171 Fb_sc_TIGR02171 Fibr 82.5 12 0.00026 34.8 8.8 84 127-211 321-412 (912)
497 COG3292 Predicted periplasmic 82.2 34 0.00075 30.0 13.3 222 63-301 164-388 (671)
498 PF03022 MRJP: Major royal jel 81.9 25 0.00053 28.2 16.5 173 36-210 33-248 (287)
499 PF14269 Arylsulfotran_2: Aryl 81.6 26 0.00057 28.2 14.5 137 130-272 21-218 (299)
500 PF11635 Med16: Mediator compl 81.4 46 0.00099 31.0 19.4 68 155-227 260-345 (753)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-49 Score=297.55 Aligned_cols=268 Identities=18% Similarity=0.234 Sum_probs=233.6
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+++|.|++|+|+ +..+|.|++ |.++++|+.+.++. .++.++|...|.|++|+|||+.||+|+
T Consensus 114 H~e~Vl~~~fsp~---g~~l~tGsG------D~TvR~WD~~TeTp--------~~t~KgH~~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 114 HGEAVLSVQFSPT---GSRLVTGSG------DTTVRLWDLDTETP--------LFTCKGHKNWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred CCCcEEEEEecCC---CceEEecCC------CceEEeeccCCCCc--------ceeecCCccEEEEEEECCCcchhhccc
Confidence 4689999999987 788999884 55669999987663 345789999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-----CCCEEEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i 157 (301)
.||+|++||.++++...+.+ ..|...|++++|.| ..++|++++.||.++|||+..+.++..+.+|..+|
T Consensus 177 ~dg~I~lwdpktg~~~g~~l------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRAL------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred cCCeEEEecCCCCCcccccc------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 99999999999888744332 34788999999976 56789999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------------------------------------------
Q 022184 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------------------------------------------ 195 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------------------ 195 (301)
+|+.|--+| +|++++.|++|++|+...|.+.+.+++|
T Consensus 251 TCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 251 TCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred EEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 999997544 8999999999999998765433222111
Q ss_pred ------------------------------------CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 196 ------------------------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 196 ------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
|..-|..+.||||+++ +++++.|..|++||.++++.+..
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-----IASaSFDkSVkLW~g~tGk~las 404 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-----IASASFDKSVKLWDGRTGKFLAS 404 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE-----EEEeecccceeeeeCCCcchhhh
Confidence 1234788999999998 89999999999999999999999
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+.+|-..|+.++|+.|.++|++|+.|.++++|++++.++..-+ .+| ...|.++.|+|||+
T Consensus 405 fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL-pGh-~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 405 FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL-PGH-ADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC-CCC-CceEEEEEecCCCc
Confidence 9999999999999999999999999999999999999988877 689 99999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-48 Score=293.07 Aligned_cols=267 Identities=14% Similarity=0.199 Sum_probs=241.8
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC--CCeEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC 80 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~ 80 (301)
...||..|.|+.+ ...+|+|+ -.|.+++|....- ....+|.+|.+.|.++.|+|. +..+|+
T Consensus 174 d~rPis~~~fS~d---s~~laT~s------wsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRD---SKHLATGS------WSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecC---CCeEEEee------cCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceee
Confidence 4689999999988 67899877 6667799987543 125679999999999999996 569999
Q ss_pred EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
|+.||++++|++++.... .....|...|..++|+|+|++|++++.|.+-++||++++..+....+|..+|.++
T Consensus 237 ~s~Dgtvklw~~~~e~~l-------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPL-------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred eccCCceeeeccCCCcch-------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 999999999999876542 2233477899999999999999999999999999999999988888999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+|+|||..+++|+.|..-+|||++++.++..+.+|.. +|..++|+|+|.. +++++.|++++|||++..+.+..+
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred EecCCCceeeccCccchhheeecccCcEEEEeccccc-ceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence 9999999999999999999999999999999998654 7999999999998 899999999999999999999999
Q ss_pred eccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 241 ~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.+|.+-|+.++|+| .|.+|++++.|++++||...++.+++.+ .+| .+.|-+++.+|||+
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~ 443 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQ 443 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCc
Confidence 99999999999999 6899999999999999999999999988 799 99999999999984
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-44 Score=271.95 Aligned_cols=243 Identities=17% Similarity=0.212 Sum_probs=217.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
....|.++.|+|.. +..-+|+++ .|+++++|.++... ....+.+|...|..++|+|+|++|++++
T Consensus 216 H~~~v~~~~fhP~~-~~~~lat~s------~Dgtvklw~~~~e~--------~l~~l~gH~~RVs~VafHPsG~~L~Tas 280 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVD-SDLNLATAS------ADGTVKLWKLSQET--------PLQDLEGHLARVSRVAFHPSGKFLGTAS 280 (459)
T ss_pred cccceeeEEEccCC-Cccceeeec------cCCceeeeccCCCc--------chhhhhcchhhheeeeecCCCceeeecc
Confidence 45778999999773 244556644 78888999998653 2456899999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|.+-++||+.++.. .+....|...|.+++|.|||.++++|+.|..-+|||++++.++..+.+|.++|.+++|
T Consensus 281 fD~tWRlWD~~tk~E-------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 281 FDSTWRLWDLETKSE-------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF 353 (459)
T ss_pred cccchhhcccccchh-------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence 999999999998765 2344468899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
+|+|..||||+.|++++|||++....+..+..|.. -|+.+.|+|...+ | +++++.|+++++|..+++.++..+.+
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~-f---L~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGY-F---LVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCe-E---EEEcccCcceeeecCCCcccchhhcC
Confidence 99999999999999999999999999988887755 6999999995443 1 79999999999999999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 243 LRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
|++.|-++..++|+.++++++.|+++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=262.69 Aligned_cols=232 Identities=19% Similarity=0.260 Sum_probs=199.5
Q ss_pred ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (301)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (301)
.....+.||.++|.+++|+|+|.+|++|+.|.++++||+.+.... ..-..|..-|.|++|+|||+.||+|+.|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-------~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-------FTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-------eeecCCccEEEEEEECCCcchhhccccC
Confidence 345678999999999999999999999999999999999887642 2333578899999999999999999999
Q ss_pred CeEEEEeCCCccee-cccccCCccEEEEEecC-----CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184 134 GHLRIMHWPSLRII-LDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 134 g~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (301)
|+|++||.++++.+ ..+.+|...|++++|.| ..++||+++.||.++|||+..+.++..+.+|.. +|+|+.|--
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG 257 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGG 257 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-ceEEEEEcC
Confidence 99999999988765 45678888999999976 567999999999999999999999999987754 799999987
Q ss_pred CCCcceEEEEEEeCCcceEEEEEccCc-----------------------------------------------------
Q 022184 208 DGTKPFLFCTVQRGDKALLAVYDISTW----------------------------------------------------- 234 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------------------------------------------- 234 (301)
+|- +++++.|++|++|+...+
T Consensus 258 ~gl------iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 258 EGL------IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred Cce------EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 765 577888888888875421
Q ss_pred --------------------------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccC
Q 022184 235 --------------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG 288 (301)
Q Consensus 235 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~ 288 (301)
+++..+.+|..-|+.+.||||++++|+++.|..|++|+.++|+.+..+ ++| -
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH-v 409 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH-V 409 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc-c
Confidence 123344566677899999999999999999999999999999999988 789 9
Q ss_pred ccEEEEEEccCCC
Q 022184 289 TSIALVEFCPTQR 301 (301)
Q Consensus 289 ~~v~~~~~spdg~ 301 (301)
.+|+.++|+.|.|
T Consensus 410 ~~VYqvawsaDsR 422 (480)
T KOG0271|consen 410 AAVYQVAWSADSR 422 (480)
T ss_pred ceeEEEEeccCcc
Confidence 9999999999975
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-40 Score=240.23 Aligned_cols=272 Identities=17% Similarity=0.175 Sum_probs=230.5
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
..++|+|+.|++| .+.++.+. .|+.+.||+--...+ .+.+.-....|..++|+|.|+++|+|+
T Consensus 54 H~~Ki~~~~ws~D---sr~ivSaS------qDGklIvWDs~TtnK--------~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 54 HLNKIYAMDWSTD---SRRIVSAS------QDGKLIVWDSFTTNK--------VHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred cccceeeeEecCC---cCeEEeec------cCCeEEEEEcccccc--------eeEEecCceeEEEEEECCCCCeEEecC
Confidence 3578999999988 66777755 677778887543322 122333477899999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|+...||++...+...... .......|.+.+.|+.|-+| ..|++++.|.+..+||+++++.+..+.+|.+.|.++++
T Consensus 117 LdN~Csiy~ls~~d~~g~~~-v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVR-VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cCceeEEEecccccccccce-eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 99999999998653322111 11234468899999999875 46899999999999999999999999999999999999
Q ss_pred cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
+| +++.+++|+-|+..++||+|.+.+.+.+.+|.. .|+++.|.|+|.- ++++++|++.++||++..+.+..+.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys 268 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYS 268 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeec
Confidence 99 999999999999999999999999999998765 5999999999997 7999999999999999988776655
Q ss_pred cc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 242 LL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 242 ~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.. ..+|++++||..|++|++|..|..+.+||.-.++....+ .+| ...|+++..+|||-
T Consensus 269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGM 328 (343)
T ss_pred cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCc
Confidence 33 368999999999999999999999999999999888877 689 99999999999983
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-41 Score=278.60 Aligned_cols=250 Identities=18% Similarity=0.250 Sum_probs=221.2
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc-------ceee----------------eCCceecccc
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFD 60 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-------~~~~----------------~~~~~~~~~~ 60 (301)
...++|+.|++| ..++|+|- .+..+++|.+.+.. ..+. ........+.
T Consensus 378 ~~~v~ca~fSdd---ssmlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 378 YQGVTCAEFSDD---SSMLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred CCcceeEeecCC---cchhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 356889999988 67888877 67778999998632 0000 0112344588
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d 140 (301)
||.++|..+.|+|+.++|++++.|+++++|.+.+...... ...|..+|..+.|+|-|-++|+++.|++-++|.
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~-------y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-------YKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEE-------ecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 9999999999999999999999999999999998876332 225789999999999999999999999999999
Q ss_pred CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
.....+.+.+.+|.+.|.|+.|+|+..++++||.|.+|++||..+|..++.+.+| ..+|.+++|||+|++ ++++
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~-----LaSg 595 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRY-----LASG 595 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCce-----Eeec
Confidence 9998998889999999999999999999999999999999999999999999875 458999999999998 8999
Q ss_pred CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+.|+.|.+||+.+++.+..+.+|.+.|.++.||.+|..||+|+.|++|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999999999864
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-40 Score=238.16 Aligned_cols=272 Identities=12% Similarity=0.140 Sum_probs=218.7
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|+.++-.+. +...+..+. .|.++.+|.+..+... .......+.||...|..+..+++|++.++++.
T Consensus 15 ~d~Vt~la~~~~--~~~~l~sas------rDk~ii~W~L~~dd~~---~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 15 TDWVTALAIKIK--NSDILVSAS------RDKTIIVWKLTSDDIK---YGVPVRRLTGHSHFVSDVVLSSDGNFALSASW 83 (315)
T ss_pred CceEEEEEeecC--CCceEEEcc------cceEEEEEEeccCccc---cCceeeeeeccceEecceEEccCCceEEeccc
Confidence 467888888755 345555544 6667789988776432 33445678999999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC-CccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~ 162 (301)
|+++++||+.+++...+ ...|...|.+++|+||.+.|++|+.|.+|++|+............. .+-|.++.|
T Consensus 84 D~~lrlWDl~~g~~t~~-------f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 84 DGTLRLWDLATGESTRR-------FVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred cceEEEEEecCCcEEEE-------EEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEE
Confidence 99999999999865332 3357889999999999999999999999999998755443322222 568999999
Q ss_pred cCC--CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 163 SLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 163 ~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+|+ ..+|++++.|++|++||+++.+....+.+|.. .++.+++||||.. .++++.||.+.+||++.++.+..+
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-cEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEec
Confidence 997 67999999999999999999998888887655 5999999999997 789999999999999999987655
Q ss_pred eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc--c-----CccEEEEEEccCCC
Q 022184 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH--L-----GTSIALVEFCPTQR 301 (301)
Q Consensus 241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~--~-----~~~v~~~~~spdg~ 301 (301)
.+...|.+++|+|+.-+|+.+. +..|+|||+.++..+..+.... + .-...+++|++||+
T Consensus 231 -~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 231 -EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred -cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 4678899999999987776665 4569999999988776553211 0 22367899999985
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=258.54 Aligned_cols=266 Identities=16% Similarity=0.195 Sum_probs=229.6
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+.+|..+.|.|+ ++-+++|. ..|.+.+|.-. ....+..++.|.++|.++.|++++.++++|+.
T Consensus 96 kc~V~~v~WtPe---GRRLltgs------~SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPE---GRRLLTGS------QSGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCC---CceeEeec------ccccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 468999999977 44455555 34455787652 12235667899999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
+|.|++|+..-.... ...-.|...|++++|+|+...++++++||+|+|||....+....+.+|.-.|.+++|+
T Consensus 159 gG~iKyWqpnmnnVk-------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVK-------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred CceEEecccchhhhH-------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 999999998655431 1111244889999999999999999999999999999888878888888899999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 243 (301)
|.-.++++++.|..|++||.+++.++.++..|. ..|..+.|+|++++ +++++.|..+++||+++.+.+..+++|
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~cl~tlh~HK-ntVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK-NTVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred CccceeEEccCCceeEeecCCCcchhhhhhhcc-ceEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcc
Confidence 999999999999999999999999999998765 46999999999987 799999999999999998889999999
Q ss_pred CCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 244 RKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 244 ~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+..++++.|+| ...+|.+|+.||.|..|.+...+++..+..+| ...|++++|+|=|
T Consensus 306 kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlG 362 (464)
T KOG0284|consen 306 KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLG 362 (464)
T ss_pred hhhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccc
Confidence 99999999999 56789999999999999999888888888899 9999999999966
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.1e-40 Score=253.80 Aligned_cols=268 Identities=18% Similarity=0.246 Sum_probs=229.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|+|++|+.+ +.++|+|. .++.++||..+... ..++..|.++|.++.|+..|.+|++++.
T Consensus 235 nkdVT~L~Wn~~---G~~LatG~------~~G~~riw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 235 NKDVTSLDWNND---GTLLATGS------EDGEARIWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred cCCcceEEecCC---CCeEEEee------cCcEEEEEecCchh---------hhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 467999999988 78999977 66777999876543 3457889999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|+++.+||..++.....+. -|..+-..+.|-.+ ..+++++.|+.|+|+.+....++.++.+|+++|.++.|+
T Consensus 297 D~ttilwd~~~g~~~q~f~-------~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFE-------FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred CccEEEEeccCceEEEeee-------eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 9999999998887633222 13444467888654 468899999999999999888999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc----eEEEEEEeCCcceEEEEEccCceEeee
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
|.+.+|++++.|++++||..........+..|.. .|..+.|+|+|... .-..+++++.|++|++||+..+.++..
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~ 447 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT 447 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence 9999999999999999999999888888887765 59999999987421 011268889999999999999999999
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+..|..+|.+++|+|+|+++|+|+.||.|+||+.+++++.+... + ...|..++|+.+|.
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-~--~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-G--TGGIFELCWNAAGD 506 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-C--CCeEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999998863 3 56799999998873
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-40 Score=237.49 Aligned_cols=235 Identities=17% Similarity=0.162 Sum_probs=203.9
Q ss_pred eccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
...+++|++.|+.++..+. .+.++++++|.++.+|++.......-... .....|...|..+..++||++.++++.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--RRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--eeeeccceEecceEEccCCceEEeccccc
Confidence 4568999999999999986 45788999999999999987643221111 22334778899999999999999999999
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcce
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPF 213 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 213 (301)
++++||+.+++..+.+.+|...|.+++|+||++.+++|+.|.+|++|++.... ..++.... ...|.++.|+|+...++
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999986554 44444333 67899999999965433
Q ss_pred EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (301)
Q Consensus 214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 293 (301)
+++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.++.+ .| ...|.+
T Consensus 165 ---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a-~~~v~s 238 (315)
T KOG0279|consen 165 ---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EA-FDIVNS 238 (315)
T ss_pred ---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cC-CCeEee
Confidence 789999999999999999999999999999999999999999999999999999999999998875 35 789999
Q ss_pred EEEccC
Q 022184 294 VEFCPT 299 (301)
Q Consensus 294 ~~~spd 299 (301)
++|+|+
T Consensus 239 l~fspn 244 (315)
T KOG0279|consen 239 LCFSPN 244 (315)
T ss_pred EEecCC
Confidence 999997
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=236.13 Aligned_cols=245 Identities=19% Similarity=0.213 Sum_probs=216.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
..-|+.|+|+|. ++++|+|+ .||...||.+......- .......+.+|++.+.++.|-+| ..|++++.
T Consensus 97 s~WVMtCA~sPS---g~~VAcGG------LdN~Csiy~ls~~d~~g--~~~v~r~l~gHtgylScC~f~dD-~~ilT~SG 164 (343)
T KOG0286|consen 97 SSWVMTCAYSPS---GNFVACGG------LDNKCSIYPLSTRDAEG--NVRVSRELAGHTGYLSCCRFLDD-NHILTGSG 164 (343)
T ss_pred ceeEEEEEECCC---CCeEEecC------cCceeEEEecccccccc--cceeeeeecCccceeEEEEEcCC-CceEecCC
Confidence 355889999988 78999988 88888999987442221 12234568999999999999875 47899999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
|.++.+||+++++.... ...|.+.|.+++++| +++.+++|+.|+..++||++.+..++.+.+|...|.++.|
T Consensus 165 D~TCalWDie~g~~~~~-------f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 165 DMTCALWDIETGQQTQV-------FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred CceEEEEEcccceEEEE-------ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 99999999999986333 235889999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
.|+|.-|++|++|++.++||+|..+.+..+.... ..+|++++||..|+. ++++..|..+.+||.-.++.+..+.
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl-----Lfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL-----LFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE-----EEeeecCCceeEeeccccceEEEee
Confidence 9999999999999999999999999888886432 346999999999997 6788999999999999999999999
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
+|++.|+++..+|||..+++|+.|..++||.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999994
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=223.15 Aligned_cols=261 Identities=12% Similarity=0.157 Sum_probs=214.7
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.+.|..+...|+ ..++|.++ -..+++|++.... +.+...+.+|+..|+++.|..+|+.+++|+.
T Consensus 40 dsqVNrLeiTpd---k~~LAaa~-------~qhvRlyD~~S~n------p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 40 DSQVNRLEITPD---KKDLAAAG-------NQHVRLYDLNSNN------PNPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred ccceeeEEEcCC---cchhhhcc-------CCeeEEEEccCCC------CCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 356777788877 55666644 3456888887654 3345678999999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc-CCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~ 162 (301)
||+++|||++.... ...+.+..+|+++..+|+...|++|..+|.|++||+........+.. ....|.++..
T Consensus 104 Dgt~kIWdlR~~~~--------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSC--------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred CceEEEEeccCccc--------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 99999999998554 34456779999999999999999999999999999987765444433 3358999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCc------eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-e
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGV------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N 235 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~ 235 (301)
.|||.+++.+...|+.++|++-... ++..++.|. ..+..+.+||++++ +++++.|.+++||+.++. +
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~-~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN-GHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc-ceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence 9999999999999999999987543 344455554 45899999999998 899999999999999987 5
Q ss_pred EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 296 (301)
....+.+|+..+..++||.||+||++|+.|+.+++|++..++.++.. .+| -....+++.
T Consensus 250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh-~K~~vc~~l 308 (311)
T KOG0315|consen 250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGH-HKAAVCVAL 308 (311)
T ss_pred eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCc-ccccEEEEe
Confidence 55677888899999999999999999999999999999999988877 566 444445544
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-38 Score=245.32 Aligned_cols=274 Identities=19% Similarity=0.231 Sum_probs=228.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc--cc----cCCcceEEEECCCCC
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF--DE----SEGDPMTIAVNPSGD 76 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~~~~~~ 76 (301)
...+|++++|+|-. ..+++.|++.. +.++|.+..+......+...++.+ .+ .+..|++++|+.+|.
T Consensus 177 ~~~~V~~~~WnP~~--~~llasg~~~s------~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 177 HESEVFICAWNPLR--DGLLASGSGDS------TARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred CCCceEEEecCchh--hhhhhccCCcc------ceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 46789999999663 44777777544 348888865332222211111111 11 235799999999999
Q ss_pred eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS 156 (301)
Q Consensus 77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 156 (301)
.||+|+.||.+++|+...... ...-.|.++|.++.|+.+|++|++++.|+++.+||..+++..+.+.-|..+
T Consensus 249 ~LatG~~~G~~riw~~~G~l~--------~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGNLI--------STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred eEEEeecCcEEEEEecCchhh--------hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 999999999999999877653 233358899999999999999999999999999999999988888777777
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
-.++.|-.+ ..|++++.|+.|+++.+....++.++.+|+ +.|.++.|+|.+.. ++++++|++++||.+.....
T Consensus 321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~-g~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHH-GEVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred ccceEEecC-ceEeecCCCceEEEEEecCCCcceeeeccc-CceEEEEECCCCce-----EEEecCCCeeEeeecCCCcc
Confidence 678899754 469999999999999999999999999865 47999999999997 89999999999999998888
Q ss_pred eeeeeccCCCcEEEEEcCCC---------CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 237 IGHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
...+..|...|..+.|+|.| ..+++++.|++|++||+..+.++..+ ..| ..+|.+++|+|+|+
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH-~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKH-QEPVYSVAFSPNGR 465 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccC-CCceEEEEecCCCc
Confidence 88999999999999999964 37999999999999999999999987 678 99999999999986
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=252.53 Aligned_cols=279 Identities=18% Similarity=0.209 Sum_probs=229.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCC-ceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
+.+|-|+.|+|+ +.++|+| ..+.++||.....-... ..| ....++.+|.+.|.++.|+.|.++|++++
T Consensus 96 k~~v~~i~fSPn---g~~fav~-------~gn~lqiw~~P~~~~~~-~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs 164 (893)
T KOG0291|consen 96 KRGVGAIKFSPN---GKFFAVG-------CGNLLQIWHAPGEIKNE-FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS 164 (893)
T ss_pred cCccceEEECCC---CcEEEEE-------ecceeEEEecCcchhcc-cCcceEeeeecCCccceeEEEeccCCceEEecc
Confidence 578999999988 6788874 45677999885544321 223 23456788999999999999999999988
Q ss_pred cCCcEEEEEEcCCcc-----------------------------------------------------------------
Q 022184 83 TNGGCKLFEVYGGAT----------------------------------------------------------------- 97 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~----------------------------------------------------------------- 97 (301)
.|-+.++|.++..+.
T Consensus 165 rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 165 RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 888888888765443
Q ss_pred --------------------------------------------------------------------------------
Q 022184 98 -------------------------------------------------------------------------------- 97 (301)
Q Consensus 98 -------------------------------------------------------------------------------- 97 (301)
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence
Q ss_pred -----------ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184 98 -----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (301)
Q Consensus 98 -----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (301)
..+...-.++...|...+.+++++|||+++++|++||.|+|||..++-+..++..|...|+.+.|+..+
T Consensus 325 g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG 404 (893)
T ss_pred cCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC
Confidence 000000012233466789999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc-ceEEEEEccCceEeeeeeccCC
Q 022184 167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRK 245 (301)
Q Consensus 167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~ 245 (301)
+.+++.+-||+|+.||+......+++..+.+....+++..|.|.. +.+++.| -.|.+|++++|+.+..+.+|++
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhcCCCC
Confidence 999999999999999999999999999887777889999999996 4555544 5699999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-eccccccccCccEEEEEEccCCC
Q 022184 246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 246 ~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+|.+++|+|++..|++++.|.+|++||+-.... ...+. + ...+..++|+|||+
T Consensus 480 PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~--i-~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 480 PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE--I-RSDVLAVSFRPDGK 533 (893)
T ss_pred cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe--e-ccceeEEEEcCCCC
Confidence 999999999999999999999999999976532 22222 3 56899999999996
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-38 Score=260.52 Aligned_cols=235 Identities=18% Similarity=0.261 Sum_probs=209.5
Q ss_pred ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc--------cccc----------------ccccCCCCCCCCC
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL----------------LAKKMPPLQDAGP 114 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~--------~~~~----------------~~~~~~~~~~~~~ 114 (301)
+..-...++|..|++++..||.|-.|..|++|.+...+. ...+ .........|.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 333456699999999999999999999999999984321 0000 0011124568899
Q ss_pred eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee
Q 022184 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR 194 (301)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 194 (301)
|..+.|+|+.++|+++++|+++++|.+.+...+....+|..+|+.+.|+|.|-+|||++.|++-++|......+++.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999988
Q ss_pred cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
|.. .+.|+.|+|+..+ +++++.|.++++||..++..++.+.+|..+|.+++|||+|++|++|+.||.|.+||+.
T Consensus 534 hls-DV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 534 HLS-DVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccc-ccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 765 5999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeccccccccCccEEEEEEccCCC
Q 022184 275 KMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 275 ~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+++++..+ .+| .+.|.++.||.||.
T Consensus 608 ~~~~v~~l-~~H-t~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 608 NGSLVKQL-KGH-TGTIYSLSFSRDGN 632 (707)
T ss_pred CCcchhhh-hcc-cCceeEEEEecCCC
Confidence 99999888 689 99999999999984
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.9e-37 Score=218.76 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=209.0
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 111 (301)
+.|.+|++|..... ....+++...+.|+.+...|+++.||+++... |++||+.++..... .....|
T Consensus 17 ~YDhTIRfWqa~tG--------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv-----~t~e~h 82 (311)
T KOG0315|consen 17 GYDHTIRFWQALTG--------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPV-----ATFEGH 82 (311)
T ss_pred cCcceeeeeehhcC--------eEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCce-----eEEecc
Confidence 38889999987532 23455666678899999999999999987655 99999998765221 222346
Q ss_pred CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 191 (301)
...|..+.|..+|+.+++|++||+++|||++..... +...+..+|+++..+|+...|+++..+|.|++||+....+...
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 789999999999999999999999999999986654 4456779999999999999999999999999999999888777
Q ss_pred EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------NKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (301)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (301)
+.......+.++...|||.. ++++...|..++|++-+. +++..++.|+..+..+.+|||+++||+++.|
T Consensus 162 liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred cCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 76666678999999999998 788889999999998653 3456788899999999999999999999999
Q ss_pred CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 266 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.+++||+.++.-.......+| ...++..+||.||+
T Consensus 237 ktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGE 271 (311)
T ss_pred ceEEEEecCCceeeEEEeecC-CceEEeeeeccCcc
Confidence 999999999883333333778 88999999999985
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=256.58 Aligned_cols=270 Identities=18% Similarity=0.286 Sum_probs=224.6
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|+|+.|+++ ++.++.+. .++.+++|....... .....+.+|...|.+++|+|+++++++++.
T Consensus 159 ~~sv~~~~fs~~---g~~l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 159 CPSVTCVDFSPD---GRALAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred cCceEEEEEcCC---CCeEEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence 467899999988 56677655 667779998843331 223455899999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|++|++||++...... .....|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|.+++|+
T Consensus 224 D~tiriwd~~~~~~~~------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 224 DKTLRIWDLKDDGRNL------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred CceEEEeeccCCCeEE------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC
Confidence 9999999994442211 1222588999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc--eEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+++.+|++++.|+.|++||+.++. +...+..+... +++.+.|+|++.+ ++++..|+.+++||+..+..+...
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceeee
Confidence 999999999999999999999999 45666655444 6899999999998 789999999999999999888888
Q ss_pred eccCCC---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 241 RLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 241 ~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
..|... +.+...++.++++++|+.|+.|++|++.++..+..+ .+|....+..++|+|..
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGHSKAAVSDLSSHPTE 434 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCCCCCceeccccCCCc
Confidence 887764 334455788999999999999999999998877776 44534667778877753
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=232.31 Aligned_cols=270 Identities=15% Similarity=0.159 Sum_probs=230.1
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
-.+|+.+-++|+ ..+++++. .+.++++|++.... + +..++||++.|.+++|+..|++|++++.
T Consensus 108 r~~vt~v~~hp~---~~~v~~as------~d~tikv~D~~tg~--~------e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 108 RSSVTRVIFHPS---EALVVSAS------EDATIKVFDTETGE--L------ERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred ccceeeeeeccC---ceEEEEec------CCceEEEEEccchh--h------hhhhhccccceeEEEEecCccEEEecCC
Confidence 356788888877 44555533 67788888875433 2 5678999999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|-.+++||.++..... .....|...|.++.|-|.|.+|++++.|.+|+.|++.++-++..+.+|..-|..++.+
T Consensus 171 Dl~~~LWd~~~~~~c~------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCI------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN 244 (406)
T ss_pred ccchhheeHHHHHHHH------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence 9999999998742211 2233467789999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE----------EEEEEeCCcceEEEEEccC
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~d~~~ 233 (301)
.||.++++++.|.++++|-+.++++...+..| +.++.+++|.|...+.-+ -.+.+++.|++|++||+.+
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t 323 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST 323 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence 99999999999999999999999888877765 457999999875432110 1268889999999999999
Q ss_pred ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
+.++.++.+|...|+.++|+|.|+||+++..|+++++||++++++.... ..| ...|++++|+.+
T Consensus 324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-~ah-~hfvt~lDfh~~ 387 (406)
T KOG0295|consen 324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-EAH-EHFVTSLDFHKT 387 (406)
T ss_pred CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc-CCC-cceeEEEecCCC
Confidence 9999999999999999999999999999999999999999999999888 478 889999999764
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=222.60 Aligned_cols=265 Identities=16% Similarity=0.157 Sum_probs=221.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.++.|+++.|+|+ +.++|.|+ .|..|.+|....+.... ..+++|.++|..+.|.+|++.|++++
T Consensus 46 h~geI~~~~F~P~---gs~~aSgG------~Dr~I~LWnv~gdceN~-------~~lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 46 HKGEIYTIKFHPD---GSCFASGG------SDRAIVLWNVYGDCENF-------WVLKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred CcceEEEEEECCC---CCeEeecC------CcceEEEEeccccccce-------eeeccccceeEeeeeccCCCEEEEec
Confidence 3688999999987 78999987 66777999866555433 34679999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
.|.+++.||.++++...+. ..|..-++.+.-+. .-.++.+++.|+++++||+++.+.++.+ ...-+++++.
T Consensus 110 tDk~v~~wD~~tG~~~rk~-------k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~ 181 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIRKH-------KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVG 181 (338)
T ss_pred CCceEEEEecccceeeehh-------ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEE
Confidence 9999999999999873332 23566677777444 3346788899999999999988876655 3456899999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----Ee
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI 237 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~ 237 (301)
|..++..+.+|+-|+.|++||++.+.....+.+|.+ +|+.+..+|+|.+ +.+.+.|.++++||++... ++
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceE
Confidence 999999999999999999999999999999988755 7999999999998 7889999999999998543 34
Q ss_pred eeeeccC----CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 238 GHKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 238 ~~~~~~~----~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
..+.++. .....++|+|+++.+.+|+.|..+++||..+...+..+ .+| .+.|..++|+|.
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPT 319 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCC
Confidence 4454443 34567899999999999999999999999988888777 789 999999999996
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-36 Score=225.79 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=219.2
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+.+|++++.+|+ .+++++|+++.. ..+|+..... + ...+.+|++.|+++.|+.+|.+||+|+
T Consensus 63 H~~svFavsl~P~---~~l~aTGGgDD~------AflW~~~~ge--~------~~eltgHKDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 63 HTDSVFAVSLHPN---NNLVATGGGDDL------AFLWDISTGE--F------AGELTGHKDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred cCCceEEEEeCCC---CceEEecCCCce------EEEEEccCCc--c------eeEecCCCCceEEEEEccCceEEEecC
Confidence 4678999999975 789999886543 3777765433 2 456889999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.+|.|+||+..++.....+. ..-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus 126 msG~v~v~~~stg~~~~~~~-------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLD-------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred CCccEEEEEcccCceEEEee-------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 99999999999887644332 23467888999999999999999999999999987777788889899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC-------------------------------------------
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK------------------------------------------- 199 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------------------------------------------- 199 (301)
.|+|+.++++..||+|++|++.+++++..+.......
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999999999999999999999998887765211111
Q ss_pred -------eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 200 -------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 200 -------v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
+.++.+.|....+- ..+.++-||+|.|||+...+.. ..-.|..+|..+.|-+ ..+|++++.+|.|+.||
T Consensus 279 ~~~~e~~~esve~~~~ss~lp--L~A~G~vdG~i~iyD~a~~~~R-~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 279 KPSQEELDESVESIPSSSKLP--LAACGSVDGTIAIYDLAASTLR-HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred cccchhhhhhhhhcccccccc--hhhcccccceEEEEecccchhh-eeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 11222222222111 1477889999999999887654 4556788899999988 78999999999999999
Q ss_pred CCCceeeccccccccCccEEEEEEccCCC
Q 022184 273 VKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.++|++...+ .+| ...|.+++.+||.+
T Consensus 355 aRtG~l~~~y-~GH-~~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 355 ARTGQLKFTY-TGH-QMGILDFALSPQKR 381 (399)
T ss_pred ccccceEEEE-ecC-chheeEEEEcCCCc
Confidence 9999999887 799 99999999999875
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-35 Score=232.49 Aligned_cols=267 Identities=21% Similarity=0.329 Sum_probs=225.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
...+|++++|+|+ ..++++|+ .++.+.+|+++.... ...+..|...+..+.|+|+++++++++
T Consensus 8 h~~~i~~~~~~~~---~~~l~~~~------~~g~i~i~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 8 HTGGVTCVAFSPD---GKLLATGS------GDGTIKVWDLETGEL--------LRTLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred cCCCEEEEEEcCC---CCEEEEee------cCcEEEEEEeeCCCc--------EEEEecCCcceeEEEECCCCCEEEEEc
Confidence 4689999999987 56777765 467789998875431 234567888999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.++.|++|++...+.... ...+...+.++.|+|+++++++++.++.+++||+++++....+..|...+.+++|
T Consensus 71 ~~~~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 71 SDKTIRLWDLETGECVRT-------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CCCeEEEEEcCcccceEE-------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 999999999987643221 1135568999999999888888888999999999988887777777789999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
+|++.++++++.|+.+++||+++++....+..+ ...+.++.|+|+++. +++++.++.|.+||+++++.+..+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~~ 217 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLRG 217 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchhh
Confidence 999989998888999999999988888877754 446999999999976 56677799999999999888877778
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+...+.+++|+|++.++++++.|+.|++|++.+++....+ ..| ...|.+++|+|+|+
T Consensus 218 ~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~ 274 (289)
T cd00200 218 HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGH-TNSVTSLAWSPDGK 274 (289)
T ss_pred cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc-ccc-CCcEEEEEECCCCC
Confidence 8889999999999989998888999999999988887776 467 78999999999864
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-35 Score=237.48 Aligned_cols=267 Identities=15% Similarity=0.235 Sum_probs=221.6
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
.+|..++|+.. +..+|+|.+ .-+.+.+|+|..+.-. ...++|...+++++++|||+++|+|+.|
T Consensus 308 ~~I~t~~~N~t---GDWiA~g~~-----klgQLlVweWqsEsYV--------lKQQgH~~~i~~l~YSpDgq~iaTG~eD 371 (893)
T KOG0291|consen 308 QKILTVSFNST---GDWIAFGCS-----KLGQLLVWEWQSESYV--------LKQQGHSDRITSLAYSPDGQLIATGAED 371 (893)
T ss_pred ceeeEEEeccc---CCEEEEcCC-----ccceEEEEEeecccee--------eeccccccceeeEEECCCCcEEEeccCC
Confidence 67888899876 678999774 3467889999876643 3457999999999999999999999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEEEec
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFS 163 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~ 163 (301)
|.|+|||...+-+...+ ..|...|+.+.|+..++.+++.+-||+|+.||+......+++.... -...+++..
T Consensus 372 gKVKvWn~~SgfC~vTF-------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 372 GKVKVWNTQSGFCFVTF-------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred CcEEEEeccCceEEEEe-------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 99999999988774333 3588999999999999999999999999999999888777665443 357789999
Q ss_pred CCCcEEEEEeCCC-cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 164 LDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 164 ~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
|.|..+..|+.|. .|.+|++++|+.+..+.+| ++||.+++|+|++.. +++++.|.+|++||+-......+...
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-EgPVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-EGPVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCC-CCcceeeEEccccCe-----EEeccccceEEEEEeeccCceeeeEe
Confidence 9999999999887 5999999999999999876 568999999999997 89999999999999865533323334
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-------------------ccccCccEEEEEEccCCC
Q 022184 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-------------------RLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~spdg~ 301 (301)
....+..++|+|+|+.|++++-||.|.+||.+.+.....+. ... ..+.+.+++|+||+
T Consensus 519 i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~-~K~Ftti~ySaDG~ 595 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK-GKTFTTICYSADGK 595 (893)
T ss_pred eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc-CCceEEEEEcCCCC
Confidence 56778999999999999999999999999998765543221 111 35799999999985
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=231.86 Aligned_cols=242 Identities=12% Similarity=0.155 Sum_probs=208.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECCCCCeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~ 81 (301)
...+|.++.|+++ +..++.|. .++.|++|..+.+.. ..+.+| ...|++++|+|+...++++
T Consensus 137 HDs~Vr~m~ws~~---g~wmiSgD------~gG~iKyWqpnmnnV---------k~~~ahh~eaIRdlafSpnDskF~t~ 198 (464)
T KOG0284|consen 137 HDSPVRTMKWSHN---GTWMISGD------KGGMIKYWQPNMNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTC 198 (464)
T ss_pred hcccceeEEEccC---CCEEEEcC------CCceEEecccchhhh---------HHhhHhhhhhhheeccCCCCceeEEe
Confidence 4679999999988 67888877 455678887765542 234444 5899999999999999999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
+.||+|+|||......... ...|.-.|.+++|+|...+|++++.|..|++||.++++++.++..|...|..+.
T Consensus 199 SdDg~ikiWdf~~~kee~v-------L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERV-------LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK 271 (464)
T ss_pred cCCCeEEEEeccCCchhhe-------eccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence 9999999999976654222 234777899999999999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-e
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-K 240 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~ 240 (301)
|+|++++|++++.|..++++|+++.+.+..+..|.. .++++.|+|-...+ +.+++.||.|..|.+...+++.. -
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk-dv~~~~WhP~~~~l----ftsgg~Dgsvvh~~v~~~~p~~~i~ 346 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK-DVTSLTWHPLNESL----FTSGGSDGSVVHWVVGLEEPLGEIP 346 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh-hheeeccccccccc----eeeccCCCceEEEeccccccccCCC
Confidence 999999999999999999999999888888887765 59999999988764 58899999999999985555443 3
Q ss_pred eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 241 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.+|...|++++|+|=|..|++|+.|.++++|.-.
T Consensus 347 ~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 347 PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 5688999999999999999999999999999754
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.9e-36 Score=234.17 Aligned_cols=266 Identities=17% Similarity=0.248 Sum_probs=223.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.-.|.++.|.|. ..-+++.++ .|+.+.||++-.... ...++.+|..+|.+++|+++|..+++++.
T Consensus 214 ~kgvsai~~fp~--~~hLlLS~g------mD~~vklW~vy~~~~-------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 214 TKGVSAIQWFPK--KGHLLLSGG------MDGLVKLWNVYDDRR-------CLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred ccccchhhhccc--eeeEEEecC------CCceEEEEEEecCcc-------eehhhhcchhhhhhhhccccCCeeeeeec
Confidence 456889999964 255565544 788899999865432 24678999999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
|+.|++||+++++...++ .....+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|
T Consensus 279 D~~lKlwDtETG~~~~~f--------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRF--------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceeeeeeccccceEEEEE--------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 999999999999874433 344677999999987 88999999999999999999998888888899999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eee
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGH 239 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~ 239 (301)
-++|+++++.++|++++||+.+.+..+............++..+|++++ ++.-+.|+.|.+|.+...-. ...
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~ 425 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKR 425 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhh
Confidence 9999999999999999999999887776665544445789999999997 68888999999998654322 234
Q ss_pred eeccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 240 KRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 240 ~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
+.+|. +.-..+.|||||++|++|+.||.+.+||.++-+++..+ ..| ..++..+.|+|.
T Consensus 426 feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l-kah-~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 426 FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL-KAH-DQPCIGVDWHPV 485 (503)
T ss_pred hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc-ccC-CcceEEEEecCC
Confidence 45554 34567899999999999999999999999999988887 678 899999999995
No 25
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.6e-34 Score=239.88 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=187.6
Q ss_pred cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCe
Q 022184 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 135 (301)
.+.+|.+.|.+++|+| ++++|++++.|++|++||+..................|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 888999999999999999976532111111111223477899999999975 68999999999
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (301)
|++||+++++....+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|.......+.|.+++..+ +.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt 228 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT 228 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence 99999999988888888888999999999999999999999999999999998888877665556678899987752 11
Q ss_pred EEEEeCCcceEEEEEccCceE-eeeeecc-CCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCceeeccccccccCccEE
Q 022184 216 CTVQRGDKALLAVYDISTWNK-IGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (301)
Q Consensus 216 ~~~~~~~~~~i~~~d~~~~~~-~~~~~~~-~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 292 (301)
+..+.+.|+.|++||+++... +.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~ 307 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK 307 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence 112235689999999987543 3222222 23455667899999999887 59999999999988776553334 56788
Q ss_pred EEEEccC
Q 022184 293 LVEFCPT 299 (301)
Q Consensus 293 ~~~~spd 299 (301)
.++|.|.
T Consensus 308 g~~~~pk 314 (493)
T PTZ00421 308 GLCMMPK 314 (493)
T ss_pred ceEeccc
Confidence 8888874
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.3e-34 Score=224.44 Aligned_cols=275 Identities=16% Similarity=0.146 Sum_probs=211.0
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
.=|.|+.|+|| +..+|..+ .|+ +++.||..+....... ..-.+|.+.|.+++|+||++.+++++.|
T Consensus 191 kFV~~VRysPD---G~~Fat~g------sDg--ki~iyDGktge~vg~l---~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 191 KFVNCVRYSPD---GSRFATAG------SDG--KIYIYDGKTGEKVGEL---EDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred cceeeEEECCC---CCeEEEec------CCc--cEEEEcCCCccEEEEe---cCCCCccccEEEEEECCCCceEEEecCC
Confidence 34899999998 67888766 444 4555666554442210 0134899999999999999999999999
Q ss_pred CcEEEEEEcCCccccccc------------------------------------cccCCCCCCCCCeeEEEEeeCCCEEE
Q 022184 85 GGCKLFEVYGGATDINLL------------------------------------AKKMPPLQDAGPQKCLSFSVDGSRFA 128 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~ 128 (301)
.+++|||+.+.+....+. ........|...|+++..+|++++|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 999999998776511110 01122335778999999999999999
Q ss_pred EeecCCeEEEEeCCCcceec------------------------------------------------------------
Q 022184 129 AGGVDGHLRIMHWPSLRIIL------------------------------------------------------------ 148 (301)
Q Consensus 129 ~~~~dg~i~v~d~~~~~~~~------------------------------------------------------------ 148 (301)
+|+.||.|.-|+..++..-+
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 99999999999985442210
Q ss_pred -------------ccccCC--------ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE-EeecCCCCeeEEEEc
Q 022184 149 -------------DEPKAH--------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFS 206 (301)
Q Consensus 149 -------------~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~ 206 (301)
.+..+. -...+++++|++..++.|+.|+.|++|.+........ ....+.+++++++||
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 000000 1235788999999999999999999999987664333 334566789999999
Q ss_pred cCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 285 (301)
||+.+ ++++...+.+.+||..+.+.... ..-|...|.+++|+|+.+++|+|+.|..|.||+++.....-.++.+
T Consensus 497 pd~~y-----la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknA 571 (603)
T KOG0318|consen 497 PDGAY-----LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNA 571 (603)
T ss_pred CCCcE-----EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccc
Confidence 99998 78999999999999998776433 3448899999999999999999999999999999987655666688
Q ss_pred ccCccEEEEEEccC
Q 022184 286 HLGTSIALVEFCPT 299 (301)
Q Consensus 286 ~~~~~v~~~~~spd 299 (301)
| ...|+.+.|-.+
T Consensus 572 H-~~gVn~v~wlde 584 (603)
T KOG0318|consen 572 H-LGGVNSVAWLDE 584 (603)
T ss_pred c-ccCceeEEEecC
Confidence 9 666999999754
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=212.80 Aligned_cols=232 Identities=19% Similarity=0.246 Sum_probs=196.4
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
...+.+|++.|+.+.|+|+|..||+++.|..|.+|++....... .....|.+.|..+.|.+|++.|++++.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCce
Confidence 45688999999999999999999999999999999986554311 112258899999999999999999999999
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
++.||.++|+.++++..|.+-+..+.-+.-|. ++.+++.|+++++||+|+.+.+..+.. ...++++.|..++..
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f~d~s~q--- 188 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGFKDTSDQ--- 188 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEecccccc---
Confidence 99999999999999999988888888554444 677888999999999999988888753 345999999999988
Q ss_pred EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee----ecccccccc---
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----NHWSKRLHL--- 287 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~----~~~~~~~~~--- 287 (301)
+.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|.++++||++.... +..+ .+|.
T Consensus 189 --v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnf 265 (338)
T KOG0265|consen 189 --VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNF 265 (338)
T ss_pred --eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhh
Confidence 78999999999999999999999999999999999999999999999999999999985432 3333 2220
Q ss_pred CccEEEEEEccCCC
Q 022184 288 GTSIALVEFCPTQR 301 (301)
Q Consensus 288 ~~~v~~~~~spdg~ 301 (301)
.......+|+|+++
T Consensus 266 eknlL~cswsp~~~ 279 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGT 279 (338)
T ss_pred hhhcceeeccCCCC
Confidence 22355678999874
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=219.23 Aligned_cols=231 Identities=13% Similarity=0.179 Sum_probs=210.6
Q ss_pred ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (301)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (301)
....++.+|.+.|.|+++.|.+++|++++.|++|+|||+.+++....+ ..|...|..+++|+-..+++++++|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-------tGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-------TGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-------cchhheeeeeeecccCceEEEecCC
Confidence 355678999999999999999999999999999999999999873332 2467889999999999999999999
Q ss_pred CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (301)
+.|+.||++..+.++.+.+|-+.|.+++.+|.-..|++++.|.++++||+++...+..+.+|. .+|..+.+.|....
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpq-- 291 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQ-- 291 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCc--
Confidence 999999999999999999999999999999999999999999999999999999999998765 47999999887666
Q ss_pred EEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (301)
Q Consensus 214 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 293 (301)
+++++.|++|++||++.++....+..|+..+.+++.+|....+|+++.| .|+-|++..++.++.+ .+| ..-|++
T Consensus 292 ---vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl-sgh-~~iint 365 (460)
T KOG0285|consen 292 ---VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL-SGH-NAIINT 365 (460)
T ss_pred ---eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc-ccc-cceeee
Confidence 7999999999999999999999999999999999999999999999987 5999999999988875 688 888999
Q ss_pred EEEccCC
Q 022184 294 VEFCPTQ 300 (301)
Q Consensus 294 ~~~spdg 300 (301)
++-+.||
T Consensus 366 l~~nsD~ 372 (460)
T KOG0285|consen 366 LSVNSDG 372 (460)
T ss_pred eeeccCc
Confidence 9988876
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-33 Score=250.85 Aligned_cols=273 Identities=13% Similarity=0.101 Sum_probs=209.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 81 (301)
..+.|++++|+++ +.++|+|+ .++.++||+.................+. +...+.+++|+| ++.+|+++
T Consensus 482 ~~~~V~~i~fs~d---g~~latgg------~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 482 SSNLVCAIGFDRD---GEFFATAG------VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCcEEEEEECCC---CCEEEEEe------CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEE
Confidence 4678999999987 67888866 6778899987542110000001111222 346799999987 47899999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
+.|++|++||+.+++... ....|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+. ++..+.++
T Consensus 552 ~~Dg~v~lWd~~~~~~~~-------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v 623 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVT-------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCV 623 (793)
T ss_pred eCCCeEEEEECCCCeEEE-------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEE
Confidence 999999999998765422 1224778999999997 78999999999999999999888776664 34689999
Q ss_pred Eec-CCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----
Q 022184 161 DFS-LDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---- 234 (301)
Q Consensus 161 ~~~-~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---- 234 (301)
.|+ +++.+|++|+.|+.|++||+++.+ .+..+.. +...|.++.|. ++.. +++++.|+.|++||++..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcccc
Confidence 995 478999999999999999998765 3455554 44579999997 5555 688899999999999743
Q ss_pred --eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc------------cccccCccEEEEEEccCC
Q 022184 235 --NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS------------KRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 235 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~------------~~~~~~~~v~~~~~spdg 300 (301)
.++..+.+|...+..++|+|++++|++|+.|+.|++|+......+... ...+ ...|.+++|+|+|
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCC
Confidence 456778888889999999999999999999999999998755332111 0223 5679999999987
Q ss_pred C
Q 022184 301 R 301 (301)
Q Consensus 301 ~ 301 (301)
+
T Consensus 776 ~ 776 (793)
T PLN00181 776 S 776 (793)
T ss_pred C
Confidence 4
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=203.22 Aligned_cols=227 Identities=15% Similarity=0.199 Sum_probs=189.2
Q ss_pred eccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 56 TYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
...+++|.+++..++|+|- |..||+++.|+.|++|+...+.. . ..+......|...|+.++|+|.|++|++++.|.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~--~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-W--TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-E--EEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4568899999999999997 88999999999999999985322 1 111122235889999999999999999999999
Q ss_pred eEEEEeCCC--cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC---ceEEEEeecCCCCeeEEEEccCC
Q 022184 135 HLRIMHWPS--LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG 209 (301)
Q Consensus 135 ~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~ 209 (301)
++.||.-.. .+++..+++|..+|.+++|+++|++||++++|..|.||.+..+ ++...++.|.. .|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-DVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-DVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-cccEEEEcCCc
Confidence 999997543 4677888999999999999999999999999999999998754 44556665544 59999999998
Q ss_pred CcceEEEEEEeCCcceEEEEEcc---CceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 210 TKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
.. +++++.|.+|++|+-. .+++...+.+|...|.+++|++.|..|++++.|++++||...+ .+...|
T Consensus 163 dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~ 232 (312)
T KOG0645|consen 163 DL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGMH 232 (312)
T ss_pred ce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchhc
Confidence 86 7999999999999876 4567888999999999999999999999999999999999652 222345
Q ss_pred cCccEEEEEEc
Q 022184 287 LGTSIALVEFC 297 (301)
Q Consensus 287 ~~~~v~~~~~s 297 (301)
+.+++.++|.
T Consensus 233 -sr~~Y~v~W~ 242 (312)
T KOG0645|consen 233 -SRALYDVPWD 242 (312)
T ss_pred -ccceEeeeec
Confidence 6677777776
No 31
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.5e-34 Score=243.20 Aligned_cols=289 Identities=15% Similarity=0.143 Sum_probs=229.1
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee---e-CCceeccccccCCcceEEEECCCCCeEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY---T-SPLVTYVFDESEGDPMTIAVNPSGDDFV 79 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 79 (301)
+..|++++-+|+ +..+|+||. +.|+.+.||..++-..... . .+.....+..|.+.|+|+.|+|||++||
T Consensus 13 ~~~IfSIdv~pd---g~~~aTgGq----~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 13 EKSIFSIDVHPD---GVKFATGGQ----VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred CeeEEEEEecCC---ceeEecCCc----cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 456899999988 667777663 3566667998876432111 1 2444556788999999999999999999
Q ss_pred EEecCCcEEEEEEcCCc-----------cccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec
Q 022184 80 CSTTNGGCKLFEVYGGA-----------TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (301)
Q Consensus 80 ~~~~d~~i~~w~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 148 (301)
+|+.|+.|.+|+..... .....+........|...|..++|+|++.+|++++.|++|.+|+..+.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 99999999999988410 0111111112233488899999999999999999999999999999999999
Q ss_pred ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC-----CCeeEEEEccCCCcceEEEEEEeCCc
Q 022184 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK 223 (301)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~ 223 (301)
.+.+|++.|-.+.|.|-|++||+-+.|++|++|++.+-...+.+..+.. .....+.|||||.++.. ..+..+.-
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las-~nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS-PNAVNGGK 244 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecc-hhhccCCc
Confidence 9999999999999999999999999999999999877666666654432 24788999999998321 12333456
Q ss_pred ceEEEEEccCceEeeeeeccCCCcEEEEEcCC-----CC------------EEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
..+.|.+..+++.-..+-+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++.......
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 78999999999988889999999999999882 12 67899999999999998888877766555
Q ss_pred cCccEEEEEEccCCC
Q 022184 287 LGTSIALVEFCPTQR 301 (301)
Q Consensus 287 ~~~~v~~~~~spdg~ 301 (301)
..+|.+++|+|||.
T Consensus 325 -~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 325 -NKSIVDMSWSPDGF 338 (942)
T ss_pred -cCceeeeeEcCCCC
Confidence 78999999999983
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-34 Score=218.52 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=219.7
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
+....|.-+.|+++ +.++|.++ .|.+.-||....... .....++.+|..+|..+.||||.++|+++
T Consensus 222 ~htdEVWfl~FS~n---GkyLAsaS------kD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHN---GKYLASAS------KDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hCCCcEEEEEEcCC---CeeEeecc------CCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEec
Confidence 34678999999988 78999977 556668999887764 22356789999999999999999999999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM 160 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~ 160 (301)
+.|..+.+||+.++........ .+...+.+++|.|||..+++|+.|+.+..||++... .....+.. ..|.++
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDL 360 (519)
T ss_pred CchHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEE
Confidence 9999999999999886322211 134678999999999999999999999999986443 34443333 469999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+.++||+++++.+.|..|++++..+......+..+ .+++++..|.++++ +...-.+..+++||++....+..+
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--QPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhcccccc--CceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHh
Confidence 99999999999999999999999877666555433 36999999999997 566667889999999988888888
Q ss_pred eccCCC--cEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 241 RLLRKP--ASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 241 ~~~~~~--v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
.+|+.. +-.-+|-- +..++++|++|++|+||+..+++++..+ .+| ...|++++|+|..
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~ 494 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPAD 494 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCC
Confidence 888754 22335543 5589999999999999999999999988 799 9999999999953
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6e-33 Score=201.15 Aligned_cols=265 Identities=14% Similarity=0.181 Sum_probs=210.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc-cccCCcceEEEECCCCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+++..++|+|.. +.++|.++ .|..++||.... ...+. ....+ .+|+..|.+++|+|.|++|++++
T Consensus 14 ~~r~W~~awhp~~--g~ilAscg------~Dk~vriw~~~~-~~s~~----ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 14 KDRVWSVAWHPGK--GVILASCG------TDKAVRIWSTSS-GDSWT----CKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred CCcEEEEEeccCC--ceEEEeec------CCceEEEEecCC-CCcEE----EEEeccccchheeeeeeecCCCcEEEEee
Confidence 4679999999652 55778766 667779999874 22221 12222 58999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc---ceecccccCCccEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLD 159 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~ 159 (301)
.|.++.||.-..++.... .....|...|.+++|+++|++||+++.|..|-||.+..+ ++...++.|...|..
T Consensus 81 FD~t~~Iw~k~~~efecv-----~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECV-----ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ccceEEEeecCCCceeEE-----eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 999999999876554221 222358899999999999999999999999999998643 455667888899999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCC---CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
+.|+|...+|++++.|.+|++|+-. .-.+.+++.+++. .|.+++|++.|.. ++++++|++++||-..+.
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~-- 227 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTD-- 227 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCce-----EEEecCCcceEeeeeccC--
Confidence 9999999999999999999999876 2356777776654 6999999999987 799999999999986632
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeeccccccccCccEEEEEEccC
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~~~~v~~~~~spd 299 (301)
....|...++.+.|. ...|++++.|+.|++|.-... +++......| ...|++++|+|.
T Consensus 228 --~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~ 291 (312)
T KOG0645|consen 228 --LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPK 291 (312)
T ss_pred --cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCC
Confidence 123456788999998 448999999999999987643 2333334678 789999999994
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-34 Score=202.71 Aligned_cols=261 Identities=16% Similarity=0.190 Sum_probs=218.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+++|.++.|+.+ +++.++.+ .|.++++|.. ....+ ..+..+|...|..++.+.|+..|++++
T Consensus 16 ~qgaV~avryN~d---GnY~ltcG------sdrtvrLWNp--~rg~l------iktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 16 AQGAVRAVRYNVD---GNYCLTCG------SDRTVRLWNP--LRGAL------IKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred cccceEEEEEccC---CCEEEEcC------CCceEEeecc--cccce------eeeecCCCceeeeccccccccccccCC
Confidence 3688999999988 77877755 6777799864 33322 456889999999999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC--cceecccccCCccEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKSVLDM 160 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~ 160 (301)
.|..+.+||+.+++...+ .-.|.+.|+.++|+.+...+++|+.|.++++||.++ .++++.+....+.|.++
T Consensus 79 gDk~v~vwDV~TGkv~Rr-------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRR-------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CCceEEEEEcccCeeeee-------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 999999999999987333 335778999999999999999999999999999975 45677777777889999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
..+ +..|++|+.||+++.||++.|....-+. +.+|+++.|+++++. .+.++.++++++.|-.+++.+...
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence 887 5679999999999999999998765554 347999999999997 788899999999999999999999
Q ss_pred eccCCCcE--EEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc-EEEEEEccC
Q 022184 241 RLLRKPAS--VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPT 299 (301)
Q Consensus 241 ~~~~~~v~--~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~spd 299 (301)
++|...-. ..+++.....+++|++||.|++||+....++..+. .+ ... |.+++++|.
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~-~~-~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS-VV-STVIVTDLSCHPT 281 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec-cC-CceeEEeeecccC
Confidence 99876433 45667777899999999999999999998887774 34 455 889999884
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-34 Score=237.03 Aligned_cols=265 Identities=15% Similarity=0.188 Sum_probs=223.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+.+|..++|+|. .-.+.++- ..+.|++|+|.... ....|.+|.++|..++|+|.+..+++|+.
T Consensus 9 SsRvKglsFHP~---rPwILtsl------HsG~IQlWDYRM~t--------li~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 9 SSRVKGLSFHPK---RPWILTSL------HSGVIQLWDYRMGT--------LIDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cccccceecCCC---CCEEEEee------cCceeeeehhhhhh--------HHhhhhccCCccceeeecCCCCeEEecCC
Confidence 578899999987 44555543 55678999996544 24568999999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|-.|++|+.+..++. .....|-..|+.+.|++.-.+|+++++|.+|+||++.+++++..+.+|...|.|..|+
T Consensus 72 DykIkVWnYk~rrcl-------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCL-------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred ccEEEEEecccceeh-------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999999998873 3444688999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc----------------------------eE-EEEeecCCCCeeEEEEccCCCcceE
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGV----------------------------AW-TFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~----------------------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
|....++++|-|.+|++||+..-+ .+ ..+.+ |+..|+.++|+|.-..
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpl--- 220 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPL--- 220 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcce---
Confidence 999999999999999999985210 11 22333 4456999999998886
Q ss_pred EEEEEeCCcceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEE
Q 022184 215 FCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~ 292 (301)
+++|++|..|++|.+...+. +.+..+|.+.|+++-|+|...++++.++|+.|++||+.....++.+... ...-+
T Consensus 221 --iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW 296 (1202)
T KOG0292|consen 221 --IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFW 296 (1202)
T ss_pred --EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeEE
Confidence 79999999999999876543 4567889999999999999999999999999999999998888887544 46777
Q ss_pred EEEEccCC
Q 022184 293 LVEFCPTQ 300 (301)
Q Consensus 293 ~~~~spdg 300 (301)
.++-+|..
T Consensus 297 ~laahP~l 304 (1202)
T KOG0292|consen 297 ILAAHPEL 304 (1202)
T ss_pred EEEecCCc
Confidence 78777754
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=235.33 Aligned_cols=219 Identities=23% Similarity=0.283 Sum_probs=189.6
Q ss_pred ecccccc-CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+...... .. ......|...|..++|+|+++++++++.|+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~---~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NL---LRELSGHTRGVSDVAFSPDGSYLLSGSDDK 225 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hh---hccccccccceeeeEECCCCcEEEEecCCc
Confidence 3444444 78899999999999999999999999999965552 11 112246888999999999999999999999
Q ss_pred eEEEEeC-CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcce
Q 022184 135 HLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 135 ~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (301)
+|++||+ ..+..++.+.+|...|++++|+|+++++++|+.|++|++||++++++...+..|.+ .|.+++|++++..
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNL-- 302 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCE--
Confidence 9999999 55577888889999999999999999999999999999999999999999998765 6999999999998
Q ss_pred EEEEEEeCCcceEEEEEccCce--EeeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 214 LFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 214 ~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
+++++.|+.|++||+.++. +...+..+.. +++.++|+|+++++++++.|+.+++||+..+...... .+|
T Consensus 303 ---l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~-~~~ 375 (456)
T KOG0266|consen 303 ---LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY-TGH 375 (456)
T ss_pred ---EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee-ccc
Confidence 7888999999999999998 4455555554 4999999999999999999999999999998877766 455
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=230.35 Aligned_cols=269 Identities=15% Similarity=0.170 Sum_probs=222.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|+.|.|.-+. .+++|+++. ...+++|...... ...+.||++.|.++....+|.+|++++.
T Consensus 323 ndEI~Dm~~lG~e--~~~laVATN------s~~lr~y~~~~~~---------c~ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 323 NDEILDMKFLGPE--ESHLAVATN------SPELRLYTLPTSY---------CQIIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred chhheeeeecCCc--cceEEEEeC------CCceEEEecCCCc---------eEEEeCchhheeeeeecccCcEEEEecC
Confidence 4567888887432 567777653 3345777433222 1257899999999997677899999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcce---------ecccccC
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRI---------ILDEPKA 153 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~ 153 (301)
|.++++|.++++....... .....|...|.+++++.. ..+|++++.|+++++|++...+. ......|
T Consensus 386 D~svilWr~~~~~~~~~~~---a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCV---AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred CceEEEEEecCCcchhhhh---hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 9999999995544322221 233458889999999874 46899999999999999976221 1123457
Q ss_pred CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
...|++++++|+.+++||||.|.+.+||++++......+.+|.. .+.++.|+|..+. +++++.|.+|+||.+.+
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQL-----LATCSGDKTVKIWSIST 536 (775)
T ss_pred cccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccce-----eEeccCCceEEEEEecc
Confidence 78999999999999999999999999999999998999988766 5999999999987 79999999999999999
Q ss_pred ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
..++.++.+|...|..+.|-.+++.|++++.||.|++|++++.+++..+ ..| ...|++++-+|++
T Consensus 537 fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl-D~H-~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL-DAH-NDRVWALSVSPLL 601 (775)
T ss_pred ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh-hhc-cceeEEEeecCcc
Confidence 9999999999999999999999999999999999999999999999988 689 9999999988864
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-34 Score=228.50 Aligned_cols=267 Identities=12% Similarity=0.146 Sum_probs=226.8
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+.+|.|+.++|. ...++.+- ..|.+.||+++.+.. ...++-..-+|.+..|-+-.+++++|+.
T Consensus 13 SdRVKsVd~HPt---ePw~la~L------ynG~V~IWnyetqtm--------VksfeV~~~PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 13 SDRVKSVDFHPT---EPWILAAL------YNGDVQIWNYETQTM--------VKSFEVSEVPVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred CCceeeeecCCC---CceEEEee------ecCeeEEEeccccee--------eeeeeecccchhhheeeeccceEEEecC
Confidence 567999999987 33444322 556779999987652 2234455788999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecccccCCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~ 162 (301)
|..|++|+..+.+... ....|...|++++.+|.-.+++++++|-.|++||++. ..+.+.+.+|...|.+++|
T Consensus 76 D~~IrVfnynt~ekV~-------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVK-------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred CceEEEEecccceeeE-------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 9999999999987632 2334889999999999999999999999999999975 4566778899899999999
Q ss_pred cC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 163 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
+| |.+.+++++-|++|++|.+.+..+..++.+|.. .|+++.+-+-|..++ ++++++|..+++||..+..+++++.
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHhh
Confidence 99 677999999999999999999999999997765 599999999998776 6899999999999999999999999
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+|...|+.+.|+|.-..+++|++||+++||+..+-++...+.- . ...|++++-.+.+
T Consensus 225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~-g-leRvW~I~~~k~~ 281 (794)
T KOG0276|consen 225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY-G-LERVWCIAAHKGD 281 (794)
T ss_pred cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc-C-CceEEEEeecCCC
Confidence 9999999999999999999999999999999999887776632 2 4678887765543
No 39
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-32 Score=216.41 Aligned_cols=265 Identities=18% Similarity=0.218 Sum_probs=222.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 82 (301)
.+||..++|..+ +.+++|+|.+ .++..+++.||.... .-.+.||...|+++.|-|... ++++++
T Consensus 103 aG~I~Di~Wd~d--s~RI~avGEG-----rerfg~~F~~DSG~S--------vGei~GhSr~ins~~~KpsRPfRi~T~s 167 (603)
T KOG0318|consen 103 AGPIKDISWDFD--SKRIAAVGEG-----RERFGHVFLWDSGNS--------VGEITGHSRRINSVDFKPSRPFRIATGS 167 (603)
T ss_pred ccccccceeCCC--CcEEEEEecC-----ccceeEEEEecCCCc--------cceeeccceeEeeeeccCCCceEEEecc
Confidence 589999999955 4789999885 444557888876542 235789999999999999776 789999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc---cCCccEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVLD 159 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~i~~ 159 (301)
.|++|.+|+=...+. ......|..-|+++.|+|||+++++++.||.+.+||-.+++.+..+. +|.+.|.+
T Consensus 168 dDn~v~ffeGPPFKF-------k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 168 DDNTVAFFEGPPFKF-------KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred CCCeEEEeeCCCeee-------eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 999999998544332 12233477889999999999999999999999999999999888776 78899999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 237 (301)
++|+||++.+++++.|.+++|||+.+.+++.++..... ..--.+.|. .+. +++.+.+|.|.+++......+
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~------lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDH------LITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCe------EEEEEcCcEEEEecccCCChh
Confidence 99999999999999999999999999999988875443 223345565 333 688888999999999999998
Q ss_pred eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
..+.+|...|+++..+||+++|++|+.||.|.-|+..++..-+.....| ...|.+++-+.
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~ 373 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-TNQIKGMAASE 373 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-cceEEEEeecC
Confidence 9999999999999999999999999999999999999998777666677 77888877665
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-34 Score=230.90 Aligned_cols=240 Identities=17% Similarity=0.225 Sum_probs=206.2
Q ss_pred cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccc
Q 022184 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATD 98 (301)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~ 98 (301)
.++++|+ .|+++++|+++.+.... .......+|+..|.+++++..+ .+|++++.|.++++|++...+..
T Consensus 378 ~llat~s------KD~svilWr~~~~~~~~----~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~ 447 (775)
T KOG0319|consen 378 DLLATGS------KDKSVILWRLNNNCSKS----LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKET 447 (775)
T ss_pred cEEEEec------CCceEEEEEecCCcchh----hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccc
Confidence 4666655 78888999995544322 2344568999999999998755 48899999999999999873221
Q ss_pred cc--cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC
Q 022184 99 IN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (301)
Q Consensus 99 ~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 176 (301)
.. ..........|...|++++.+|+.++|++|+.|.+.++|++++......+.+|...|+++.|+|..+.++|+|.|.
T Consensus 448 ~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~ 527 (775)
T KOG0319|consen 448 AFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK 527 (775)
T ss_pred cccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence 11 1111123345788999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC
Q 022184 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (301)
Q Consensus 177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (301)
+|+||.+.+..++.++.+|.. .|..+.|-.+++. +++++.||.|++|++++.+++..+..|+..|++++.+|..
T Consensus 528 TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~q-----liS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 528 TVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQ-----LISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred eEEEEEeccceeeeeecCccc-eeEeeeeeeCCcE-----EEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 999999999999999998765 6999999999998 8999999999999999999999999999999999999999
Q ss_pred CEEEEeeCCCcEEEEeCCC
Q 022184 257 KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 257 ~~l~~~~~d~~i~i~~~~~ 275 (301)
.++++|+.||.|.+|.=.+
T Consensus 602 ~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 602 DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ceeEecCCCeEEEEeecCc
Confidence 9999999999999997544
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.2e-33 Score=200.51 Aligned_cols=264 Identities=16% Similarity=0.213 Sum_probs=223.0
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~ 81 (301)
...+|.+++|+.+ +..++.|. .+.++.+|..+..... ......+|.+.|..++|+| +.+.|+++
T Consensus 19 ~~~~v~Sv~wn~~---g~~lasgs------~dktv~v~n~e~~r~~------~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 19 HVQKVHSVAWNCD---GTKLASGS------FDKTVSVWNLERDRFR------KELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred hhhcceEEEEccc---Cceeeecc------cCCceEEEEecchhhh------hhhcccCCCcchhhheeCCCCCcceEEe
Confidence 3578999999988 66777766 7778899999876321 2445789999999999998 55689999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
+.|.+|++||+..++...... ..+.-.-+.|+|+|.++++++.|..|...|.++.+..... .....+..++
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~--------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIE--------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred cCCceEEEEEeccCcEEEEee--------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999999999999887643332 2234456899999999999999999999999887765443 3445788899
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
|+-++.+++.....|.|.|.....-+++..++.|.. ...|+.|+|+|++ +++|+.|..+.+||+...-+++.+.
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCc-ceEEEEECCCCce-----EeeccccceeeccChhHhhhheeec
Confidence 998777777777779999999999999999988764 5889999999998 7999999999999999888888899
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+.-+|+.+.||.||++||+|++|..|-|=++++|..+..+. + .++...++|+|.
T Consensus 229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~-~~~t~tVAWHPk 283 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--C-EGPTFTVAWHPK 283 (313)
T ss_pred cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--c-cCCceeEEecCC
Confidence 999999999999999999999999999999999999988764 4 789999999996
No 42
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=5.4e-32 Score=226.01 Aligned_cols=253 Identities=9% Similarity=0.100 Sum_probs=184.3
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecCCcEEEEEEcCCccccc-cccccCCCC
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPL 109 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~~~~ 109 (301)
+..+.+++|...... ....+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+........ .........
T Consensus 51 G~~gvI~L~~~~r~~--------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~ 122 (568)
T PTZ00420 51 GLIGAIRLENQMRKP--------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122 (568)
T ss_pred CceeEEEeeecCCCc--------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence 356777888764321 23457899999999999996 78999999999999999976432111 000001123
Q ss_pred CCCCCeeEEEEeeCCCE-EEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184 110 QDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (301)
Q Consensus 110 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 188 (301)
.|...|.+++|+|++.. |++++.|+.|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++.
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 47789999999998875 5788999999999999988766554 557899999999999999999999999999999999
Q ss_pred EEEEeecCCCC----eeEEEEccCCCcceEEEEEEeCCc----ceEEEEEccC-ceEeeeeeccC--CCcEEEEEcCCCC
Q 022184 189 WTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDGK 257 (301)
Q Consensus 189 ~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~-~~~~~~~~~~~--~~v~~~~~s~~~~ 257 (301)
+..+..|.... +....|++++.+ +++++.+ ++|++||+++ .+++.....+. ..+......+++.
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 88887765432 122345688876 4554444 4899999995 44554433222 2222333345688
Q ss_pred EEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 258 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
++++|+.|+.|++|++..+.........+ ..+..+++|.|.
T Consensus 277 l~lsGkGD~tIr~~e~~~~~~~~l~~~~s-~~p~~g~~f~Pk 317 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLGSIRKVNEYKS-CSPFRSFGFLPK 317 (568)
T ss_pred EEEEEECCCeEEEEEccCCcEEeeccccc-CCCccceEEccc
Confidence 99999999999999998775443332234 678899999986
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=231.11 Aligned_cols=251 Identities=13% Similarity=0.171 Sum_probs=203.6
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCC----------------------------cc-e-----
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK----------------------------TT-S----- 48 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~----------------------------~~-~----- 48 (301)
..+.|.||.|++| +.|+|.|| .|+.|+||.+-.. .. .
T Consensus 266 h~gaIw~mKFS~D---GKyLAsaG------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKFSHD---GKYLASAG------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEeCCC---CceeeecC------CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4688999999999 88999988 7888899987540 00 0
Q ss_pred ------------------eeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184 49 ------------------VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 49 ------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
....+.+...+.||.+.|.++.|+.++ +|++++.|.+|+||++...++ +..+.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C--------L~~F~ 407 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC--------LKVFS 407 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce--------eeEEe
Confidence 000123456788999999999999754 899999999999999998877 77788
Q ss_pred CCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184 111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (301)
Q Consensus 111 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 189 (301)
|...|+|++|+| |.++|++|+-||.|+||++...+.+.. ..-+.-|++++|.|||+..+.|+.+|.+++|++...+..
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 999999999999 899999999999999999987776543 344578999999999999999999999999999887766
Q ss_pred EEEeecC-------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC--CcEEEEEcCCCCEEE
Q 022184 190 TFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYLA 260 (301)
Q Consensus 190 ~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~ 260 (301)
....... ...|+.+.|.|....- ++..+.|..|+|||.++...+..+++... .-....|+.||++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 5543211 2269999999865531 46667899999999988888877776543 334568999999999
Q ss_pred EeeCCCcEEEEeCCCc
Q 022184 261 MGSKDGDICVVDVKKM 276 (301)
Q Consensus 261 ~~~~d~~i~i~~~~~~ 276 (301)
+++.|..|++|+....
T Consensus 563 s~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 563 SASEDSWVYIWKNDSF 578 (712)
T ss_pred EeecCceEEEEeCCCC
Confidence 9999999999998543
No 44
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=210.02 Aligned_cols=274 Identities=13% Similarity=0.180 Sum_probs=225.2
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+..+-|..|+|| +++++.|. .|+.+.+|+|-...-...-...+.-.+--+.++|.|+.|+.|...||+|+.
T Consensus 213 KSh~EcA~FSPD---gqyLvsgS------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 213 KSHVECARFSPD---GQYLVSGS------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred ccchhheeeCCC---CceEeecc------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 456789999999 78999876 888999999965432111122233345567899999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
||.|++|.++++.+..++.. .|...|+|+.||.|+..+++++.|.++++--+++|+.+..+.+|.+.|+...|.
T Consensus 284 DGkIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred CCcEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999988544432 377899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
+||..+++++.||+|++|+.++.+++.+++.. .+.+|..+..-|..... ++.....++|.+.++. ++.++.+..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEecc-ceEEeeecc
Confidence 99999999999999999999999999888643 45578888888876543 3556777889999986 455555543
Q ss_pred c---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 243 L---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 243 ~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
. .+..-+.+.||.|.++++.++|+.++.|.+.+|++.+.+ ..| ...|-.++.+|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl-~Vh-EkdvIGl~HHPH 490 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL-PVH-EKDVIGLTHHPH 490 (508)
T ss_pred CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeee-ecc-cccccccccCcc
Confidence 2 345667789999999999999999999999999988877 567 666777777764
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-33 Score=200.44 Aligned_cols=276 Identities=14% Similarity=0.164 Sum_probs=211.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeC-CCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFD-PKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS 81 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 81 (301)
+..=+++.|+|--++...+|++..-+.. ..|.+.|.+.+ +.+-.. ...+ .-.+.+..++|+++. +.++++
T Consensus 8 gf~GysvqfSPf~~nrLavAt~q~yGl~-G~G~L~ile~~~~~gi~e------~~s~-d~~D~LfdV~Wse~~e~~~~~a 79 (311)
T KOG0277|consen 8 GFHGYSVQFSPFVENRLAVATAQHYGLA-GNGRLFILEVTDPKGIQE------CQSY-DTEDGLFDVAWSENHENQVIAA 79 (311)
T ss_pred CcccceeEecccccchhheeehhhcccc-cCceEEEEecCCCCCeEE------EEee-ecccceeEeeecCCCcceEEEE
Confidence 3445788999876655555555543332 33444454443 222111 1111 236789999999965 477888
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
+.||++++||+.....+.. ...+|...|.++.|++ ++..+++++.|++|++|+....+.++++.+|...|...
T Consensus 80 ~GDGSLrl~d~~~~s~Pi~------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMPSKPIH------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred ecCceEEEeccCCCCcchh------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 9999999999655443222 2224788999999999 66778888999999999999999999999999999999
Q ss_pred EecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184 161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG 238 (301)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~ 238 (301)
+|+| ..+.+++++.|+++++||++.......+..|. ..+.++.|+.-...+ +++++.|+.|+.||+++.+ ++.
T Consensus 154 ~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 154 AFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred ecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecc-ceeEeecccccCCcE----EEecCCCceEEEEehhhccccce
Confidence 9999 67799999999999999998765555566665 469999999877763 7999999999999998764 467
Q ss_pred eeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 239 HKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 239 ~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+.+|.-.|+.++|||. ...|++++.|-+++|||...+.........| ...|..+.||+-
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~ 289 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLF 289 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccc
Confidence 77888899999999996 4789999999999999998766554444567 888999998863
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=206.37 Aligned_cols=279 Identities=13% Similarity=0.241 Sum_probs=226.9
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc----------ceeeeCCceeccccccCCcceEEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT----------TSVYTSPLVTYVFDESEGDPMTIAV 71 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~ 71 (301)
+.++|+.|.+|++| +.++|+|+ .|..|+|++....- +.-...--...++-.|.++|+++.|
T Consensus 110 ~HK~~cR~aafs~D---G~lvATGs------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPD---GSLVATGS------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred ecccceeeeeeCCC---CcEEEccC------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 35789999999999 78999987 67778998876211 0000111234567889999999999
Q ss_pred CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-
Q 022184 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE- 150 (301)
Q Consensus 72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~- 150 (301)
+|....|++++.|++|++||+....... ....++...+|.++.|+|.|.+|++|.+...+++||+++.++...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999999999997654321 2344556689999999999999999999999999999998775432
Q ss_pred --ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 151 --PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 151 --~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
.+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. |.+..|.+..|..+|++ +++++.|..++
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vk 330 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVK 330 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceee
Confidence 34567899999999999999999999999999999999988864 44557999999999998 79999999999
Q ss_pred EEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 228 VYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 228 ~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+|.+.+++.+....+.. ..-+...|+....|++.-.+ .+.+.-||.++.........+| .+.+..+..||.+
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~ 408 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVE 408 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCC
Confidence 99999999887776542 22345667777778777654 4689999999999888887889 9999999999865
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.1e-32 Score=214.44 Aligned_cols=229 Identities=21% Similarity=0.310 Sum_probs=198.0
Q ss_pred ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (301)
..+.+|.++|.+++|+|++++|++++.||.+++|++.+.+.... ...|...+..+.|+|+++.+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-------LKGHTGPVRDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE-------EecCCcceeEEEECCCCCEEEEEcCCCeE
Confidence 34678999999999999999999999999999999987653211 12355678899999999999999999999
Q ss_pred EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (301)
++|++.+++....+..+...+.++.|+|+++++++++.|+.+++||+++++....+..+ ...+.++.|+|++..
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~----- 149 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTF----- 149 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCcCCE-----
Confidence 99999987777777777779999999999888988888999999999988888877744 456999999999775
Q ss_pred EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 296 (301)
+++++.++.|.+||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+ ..| ...+.+++|
T Consensus 150 l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~ 227 (289)
T cd00200 150 VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGH-ENGVNSVAF 227 (289)
T ss_pred EEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch-hhc-CCceEEEEE
Confidence 566667999999999988888888888889999999999999999999999999999998887776 456 779999999
Q ss_pred ccCC
Q 022184 297 CPTQ 300 (301)
Q Consensus 297 spdg 300 (301)
+|++
T Consensus 228 ~~~~ 231 (289)
T cd00200 228 SPDG 231 (289)
T ss_pred cCCC
Confidence 9975
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=206.39 Aligned_cols=265 Identities=13% Similarity=0.102 Sum_probs=222.2
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.+-|.|+++-|. ...+++|+ .|.+++||++.... ....+.||-..|..+++|+-..|+.+++.
T Consensus 151 lgWVr~vavdP~---n~wf~tgs------~DrtikIwDlatg~--------LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 151 LGWVRSVAVDPG---NEWFATGS------ADRTIKIWDLATGQ--------LKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cceEEEEeeCCC---ceeEEecC------CCceeEEEEcccCe--------EEEeecchhheeeeeeecccCceEEEecC
Confidence 466899999976 56888877 67778999886433 24568899999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|+.|+.||++.++... ....|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.
T Consensus 214 dk~VKCwDLe~nkvIR-------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIR-------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred CCeeEEEechhhhhHH-------HhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 9999999999887632 233467899999999998999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 243 (301)
|-...+++|+.|++|++||++.++....+..|. ..+.+++.+|.... +++++.| .|+-|++..+..+..+.+|
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk-ksvral~lhP~e~~-----fASas~d-nik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK-KSVRALCLHPKENL-----FASASPD-NIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeeccc-ceeeEEecCCchhh-----hhccCCc-cceeccCCccchhhccccc
Confidence 988899999999999999999999988887554 46999999999875 4555544 7999999999998889999
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----ccc--cCccEEEEEEccCC
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLH--LGTSIALVEFCPTQ 300 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~--~~~~v~~~~~spdg 300 (301)
+.-+.+++...|+ ++++|+.+|.+.+||.+++...+... .+. ....|.+.+|...|
T Consensus 360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 9999999998876 78999999999999999886554431 111 13457777776554
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.2e-34 Score=213.41 Aligned_cols=252 Identities=14% Similarity=0.175 Sum_probs=204.9
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
....|+|+++-.+ .++.|. .|++++||+.+.. .....+.||++.|.|+.| +.+.+++|+
T Consensus 196 ~skgVYClQYDD~-----kiVSGl------rDnTikiWD~n~~--------~c~~~L~GHtGSVLCLqy--d~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE-----KIVSGL------RDNTIKIWDKNSL--------ECLKILTGHTGSVLCLQY--DERVIVSGS 254 (499)
T ss_pred cCCceEEEEecch-----hhhccc------ccCceEEeccccH--------HHHHhhhcCCCcEEeeec--cceEEEecC
Confidence 4567999998755 555544 7889999987532 234568999999999999 466999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---ecccccCCccEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLD 159 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~i~~ 159 (301)
.|.+|++||+++++.. ...+.|...|..+.|+. .++++++.|.++.+||+..... ...+.+|...|..
T Consensus 255 SDsTvrvWDv~tge~l-------~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPL-------NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred CCceEEEEeccCCchh-------hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 9999999999999873 23445778999999974 4899999999999999976543 2345678889999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
+.|+ .+++++++.|.+|++|++.+++.+..+.+|..+ |.|+.+ .++. +++|+.|.+|++||+..|.+++.
T Consensus 326 Vdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG-IAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRv 395 (499)
T KOG0281|consen 326 VDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG-IACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRV 395 (499)
T ss_pred eccc--cceEEEecCCceEEEEeccceeeehhhhccccc-ceehhc--cCeE-----EEecCCCceEEEEeccccHHHHH
Confidence 9996 669999999999999999999999999887654 666655 4554 78999999999999999999999
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc--------ccccccCccEEEEEEc
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--------SKRLHLGTSIALVEFC 297 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~--------~~~~~~~~~v~~~~~s 297 (301)
+.+|+.-|.++.| |.+.+++|+.||+|++||+..+...+. ....| .+.|..+.|.
T Consensus 396 LeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD 458 (499)
T KOG0281|consen 396 LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD 458 (499)
T ss_pred HhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec
Confidence 9999999999999 567899999999999999987643311 11346 6778888774
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-32 Score=211.60 Aligned_cols=264 Identities=17% Similarity=0.216 Sum_probs=206.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.-.+|.+++|+|... ..++++++ -.++||.-.... . ...+....+.|.++.|-.||++|++|+
T Consensus 25 e~~~vssl~fsp~~P-~d~aVt~S--------~rvqly~~~~~~--~------~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHP-YDFAVTSS--------VRVQLYSSVTRS--V------RKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ccCcceeEecCCCCC-CceEEecc--------cEEEEEecchhh--h------hhhHHhhccceeEEEeecCCeEEEccC
Confidence 347899999997432 23444422 123455433222 1 223455678899999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
..|.|++||..+... . .....|..++..+.|+| ++..+++|++|+.+++||+.+......+.+|.+.|.+.+
T Consensus 88 ~sG~V~vfD~k~r~i-L------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVI-L------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred CcCcEEEeccccHHH-H------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 999999999554222 1 12234788999999999 566788899999999999999887668889999999999
Q ss_pred ecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184 162 FSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG 238 (301)
Q Consensus 162 ~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~ 238 (301)
|+|-.. +++||+.||.|++||++.. ..+.++. ++.+|..+.+-|.|.. +++++ ...+++||+-++. .+.
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~-----iasAg-Gn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSL-----IASAG-GNSVKVWDLTTGGQLLT 232 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCE-----EEEcC-CCeEEEEEecCCceehh
Confidence 999544 8999999999999999987 4455554 6678999999999986 44444 5589999998554 455
Q ss_pred eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
....|...|+|+++..++..|++++-|+.|++||+.+.+.+.... . .++|-+++.+||++
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~-~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--Y-PGPVLSIAVSPDDQ 292 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--c-ccceeeEEecCCCc
Confidence 555599999999999999999999999999999999988888753 3 78999999999864
No 51
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-33 Score=208.26 Aligned_cols=234 Identities=18% Similarity=0.237 Sum_probs=210.0
Q ss_pred CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (301)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (301)
|...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++.... ...|...+..++|+..|+++++++.
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~-------LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS-------LRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh-------hhccccceeEEEEecCccEEEecCC
Confidence 345667888999999999999999999999999999999999987222 2247778999999999999999999
Q ss_pred CCeEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 133 DGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 133 dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
|-.+++||..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++..|.+ .+..++.+.||..
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti 249 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTI 249 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeE
Confidence 99999999987 556667778888999999999999999999999999999999999999997755 7999999999997
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC---------------CCEEEEeeCCCcEEEEeCCCc
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~d~~i~i~~~~~~ 276 (301)
+++++.|.+|++|-+.++++...+..|+.+|.+++|.|. ++++.+++.|++|++||+.++
T Consensus 250 -----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 250 -----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred -----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 799999999999999999888889999999999999763 258999999999999999999
Q ss_pred eeeccccccccCccEEEEEEccCCC
Q 022184 277 EINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 277 ~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.++..+ .+| ...|.+++|+|-||
T Consensus 325 ~cL~tL-~gh-dnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 325 MCLFTL-VGH-DNWVRGVAFSPGGK 347 (406)
T ss_pred eEEEEE-ecc-cceeeeeEEcCCCe
Confidence 999888 789 99999999999986
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-31 Score=237.91 Aligned_cols=234 Identities=18% Similarity=0.213 Sum_probs=190.4
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeE
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHL 136 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i 136 (301)
.+..|.+.|.+++|+|++++|++++.|+.|++|+.................+.+...+.+++|+| ++.+|++++.||.|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 35568999999999999999999999999999997642111110000011123456789999988 57899999999999
Q ss_pred EEEeCCCcceecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc-cCCCcceE
Q 022184 137 RIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-KDGTKPFL 214 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~ 214 (301)
++||+.+++.+..+..|.+.|++++|+| ++.+|++++.|+.|++||++++..+..+..+ ..+.++.|+ +++..
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~--- 632 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS--- 632 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE---
Confidence 9999999988888888989999999997 7889999999999999999999888877643 358999995 45766
Q ss_pred EEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc------eeecccccccc
Q 022184 215 FCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHL 287 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~ 287 (301)
+++++.|+.|++||+++.+ .+..+..|...|..+.|. ++.+|++++.|+.|++||+..+ +.+..+ .+|
T Consensus 633 --latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh- 707 (793)
T PLN00181 633 --LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH- 707 (793)
T ss_pred --EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-
Confidence 7889999999999998765 455677888999999997 7789999999999999999753 344444 578
Q ss_pred CccEEEEEEccCCC
Q 022184 288 GTSIALVEFCPTQR 301 (301)
Q Consensus 288 ~~~v~~~~~spdg~ 301 (301)
...+..++|+|+|+
T Consensus 708 ~~~i~~v~~s~~~~ 721 (793)
T PLN00181 708 TNVKNFVGLSVSDG 721 (793)
T ss_pred CCCeeEEEEcCCCC
Confidence 88899999999874
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-33 Score=198.90 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=195.7
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 82 (301)
...++.++|++..+ ++++++. .||.+++|+...... +...++.|..+|.++.|++ .++.+++++
T Consensus 60 ~D~LfdV~Wse~~e--~~~~~a~------GDGSLrl~d~~~~s~-------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 60 EDGLFDVAWSENHE--NQVIAAS------GDGSLRLFDLTMPSK-------PIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred ccceeEeeecCCCc--ceEEEEe------cCceEEEeccCCCCc-------chhHHHhhhhheEEeccccccceeEEeec
Confidence 45678899997754 4444433 466779998544332 3456899999999999998 566778889
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
.|++|++|+...+..... ...|...|...+|+| .++.+++++.|+.+++||++.......++.|..+|.++.
T Consensus 125 WD~TiKLW~~~r~~Sv~T-------f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 125 WDGTIKLWDPNRPNSVQT-------FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD 197 (311)
T ss_pred cCCceEeecCCCCcceEe-------ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence 999999999876655222 334778999999999 788999999999999999986555556888888999999
Q ss_pred ecC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eee
Q 022184 162 FSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIG 238 (301)
Q Consensus 162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~ 238 (301)
|+. +.+.++|++.|+.|+.||++.-+ ++..+.+ +...|+.++|||....+ +++++.|-++++||...+. .+.
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecC-CceEEEEEecCcchhhH----hhhccccceEEecccccchhhhh
Confidence 998 66789999999999999999754 4556644 46679999999988764 6899999999999988544 455
Q ss_pred eeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeC
Q 022184 239 HKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 239 ~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~ 273 (301)
....|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6677888899999998 5789999999999999984
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-32 Score=196.45 Aligned_cols=267 Identities=16% Similarity=0.183 Sum_probs=210.6
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
....|++-+.++.+ +.++...+ .|.+..+|.- .++..+ -++.||++.|.++..+-+.+++++|
T Consensus 8 GHERplTqiKyN~e---GDLlFsca------KD~~~~vw~s-~nGerl-------Gty~GHtGavW~~Did~~s~~liTG 70 (327)
T KOG0643|consen 8 GHERPLTQIKYNRE---GDLLFSCA------KDSTPTVWYS-LNGERL-------GTYDGHTGAVWCCDIDWDSKHLITG 70 (327)
T ss_pred cCccccceEEecCC---CcEEEEec------CCCCceEEEe-cCCcee-------eeecCCCceEEEEEecCCcceeeec
Confidence 45689999999977 55666544 5666688843 344333 3578999999999999999999999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeEEEEeCC-------Ccceecc
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILD 149 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~v~d~~-------~~~~~~~ 149 (301)
+.|.++++||+++++. +.......+|..+.|+++|++++...+ .+.|.++|++ ..++..+
T Consensus 71 SAD~t~kLWDv~tGk~--------la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQ--------LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cccceeEEEEcCCCcE--------EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 9999999999999987 333345678999999999998887764 4789999997 3445667
Q ss_pred cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
+..+.+.++.+-|.|-++.|++|..||.|..||+++++....-...|...|+.+.++||..+ .++++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceee
Confidence 77777899999999999999999999999999999987665554445557999999999998 7999999999999
Q ss_pred EccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE--EeCCCc------------eeeccccccccCccEEEEE
Q 022184 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV--VDVKKM------------EINHWSKRLHLGTSIALVE 295 (301)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i--~~~~~~------------~~~~~~~~~~~~~~v~~~~ 295 (301)
|.++.+.+..+.. ..++++.+++|....++.|+.....-+ =+.+.+ +.+..+ .+| =++|++++
T Consensus 218 D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvA 294 (327)
T KOG0643|consen 218 DVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVA 294 (327)
T ss_pred eccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeE
Confidence 9999888876654 678999999998777777654322222 222222 222233 678 89999999
Q ss_pred EccCCC
Q 022184 296 FCPTQR 301 (301)
Q Consensus 296 ~spdg~ 301 (301)
|+|||+
T Consensus 295 fhPdGk 300 (327)
T KOG0643|consen 295 FHPDGK 300 (327)
T ss_pred ECCCCc
Confidence 999996
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9.1e-33 Score=198.26 Aligned_cols=267 Identities=13% Similarity=0.186 Sum_probs=223.2
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
...||..++|+|-...+-+++.+..++.. .+- +.++..+ .-++.+|.+.|.+...+.+..+.|+++
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~p------mlr--~g~tgdw------igtfeghkgavw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKP------MLR--NGDTGDW------IGTFEGHKGAVWSATLNKNATRAASAA 78 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCc------hhc--cCCCCCc------EEeeeccCcceeeeecCchhhhhhhhc
Confidence 35788999999765556666665533221 111 1223333 446899999999999999998999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~ 161 (301)
.|=+-++||.-++.. +..+.|..-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+-
T Consensus 79 adftakvw~a~tgde--------lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~ 150 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDE--------LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVL 150 (334)
T ss_pred ccchhhhhhhhhhhh--------hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEE
Confidence 999999999988765 6677788899999999999999999999999999997654 3456778889999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
|....+.|++++.|++||+||.+++..++++...+ +|+++..+++|++ ++-...+.|.+||..+...+..++
T Consensus 151 wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~i------lTia~gssV~Fwdaksf~~lKs~k 222 (334)
T KOG0278|consen 151 WCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRI------LTIAYGSSVKFWDAKSFGLLKSYK 222 (334)
T ss_pred EeccCceEEeeccCCceEEEEeccCcEEEEEecCC--CCcceeeccCCCE------EEEecCceeEEeccccccceeecc
Confidence 99988899999999999999999999999998654 5999999999995 555567789999999988876655
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
. ...|.+.+++|+...+++|++|..++.||..+++.+.....+| -++|.++.|+|||.
T Consensus 223 ~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 223 M-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGE 280 (334)
T ss_pred C-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCc
Confidence 3 4678899999999999999999999999999999888866788 99999999999984
No 56
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-32 Score=219.72 Aligned_cols=212 Identities=20% Similarity=0.287 Sum_probs=188.2
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-----ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-----DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (301)
..++|.+.|.+++.+||++.+++++.|.+|++||..--.. ...+...+...+.-...|.|+++||||++|+++--
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL 528 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL 528 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence 4578999999999999999999999999999999853221 11122222334445688999999999999999999
Q ss_pred CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (301)
Q Consensus 133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (301)
|.+++||-+++.+-...+.+|.-||.|+..+||++.++||+.|.+|++|-+.-|.+-.++..|.+ .|.++.|.|....
T Consensus 529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~- 606 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHL- 606 (888)
T ss_pred cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEccccee-
Confidence 99999999999999889999999999999999999999999999999999999999999987765 5999999997665
Q ss_pred eEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+++++.|+.|+-||-.+.+.+..+.+|...|++++.+|+|.++++++.|.+|++|....
T Consensus 607 ----FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 607 ----FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ----EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 68899999999999999999999999999999999999999999999999999999765
No 57
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=183.24 Aligned_cols=280 Identities=15% Similarity=0.184 Sum_probs=217.5
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc-----eeeeCC-ce-eccccccCCcceEEEECCC
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-----SVYTSP-LV-TYVFDESEGDPMTIAVNPS 74 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~-~~-~~~~~~h~~~v~~~~~~~~ 74 (301)
+....|.+++|+|. +.+.|+|.. ..+++|..|..-.. +-..+| .. -...+.|.+.|.|.+|+|+
T Consensus 30 ~dsqairav~fhp~---g~lyavgsn------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPA---GGLYAVGSN------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred cchhheeeEEecCC---CceEEeccC------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 45677999999988 668888773 34557776632111 111122 22 2345778999999999999
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC----CCEEEEee-cCCeEEEEeCCCcceecc
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD 149 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~ 149 (301)
|++|++++.|++|++..+...... .....+...-|.+.|+.++|-.+ +.+|++++ .|..|++-|..+++....
T Consensus 101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 999999999999999888655432 22233444458899999999653 45666654 477888889999999888
Q ss_pred cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec------CCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (301)
Q Consensus 150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 223 (301)
+.+|.+.|.++ ++=++-++++|+.|.+|++||++-..++..+... ....|..++..|.|+. ++++..|
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d 252 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD 252 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence 99999988776 3335889999999999999999998888877421 1246899999999997 7999999
Q ss_pred ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc---eeeccccccccCccEEEEEEccC
Q 022184 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~v~~~~~spd 299 (301)
....+||++.++.++.+..|...|+++.|||...|+++++.|.+|++-|++.. ++.......| ...+-.+.|+|.
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~ 330 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQ 330 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999743 2222333567 777888899886
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=207.42 Aligned_cols=266 Identities=14% Similarity=0.183 Sum_probs=218.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.+.|..+.|.++ ...++.|+ .|..|++|...+....+ ..++.+..+.|+++.|.++++++++++.
T Consensus 175 ~gev~~v~~l~~---sdtlatgg------~Dr~Ik~W~v~~~k~~~------~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 175 EGEVHDVEFLRN---SDTLATGG------SDRIIKLWNVLGEKSEL------ISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ccccceeEEccC---cchhhhcc------hhhhhhhhhcccchhhh------hhhhhccCCCcceeeecCCCceEEeecC
Confidence 467788888876 45777766 67777999988776433 3457788899999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|+.+++|++...+.... ...|.+.|+++.|......+++|+.|.+|++||+....+...... ...+.+|+.+
T Consensus 240 d~~~r~Wnvd~~r~~~T-------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~ 311 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHT-------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS 311 (459)
T ss_pred CCceeeeeccchhhhhh-------hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec
Confidence 99999999988776222 224889999999988776799999999999999998877665543 3456666665
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 243 (301)
...++++..|++|++||.++..+......+ +.|+++..++++.. +.+.+.|..+.+.|+++.+....+...
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence 556889999999999999999998888755 36999999999998 677799999999999998877666543
Q ss_pred C----CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 244 R----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 244 ~----~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
. ...+.+.|||++.|+++|+.||.|+||++.++++...+...+....|++++|+|.|+
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 2 457889999999999999999999999999999888776555123699999999874
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-31 Score=192.57 Aligned_cols=231 Identities=11% Similarity=0.126 Sum_probs=196.5
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCC
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 134 (301)
+..+++|...|.+++|+.+|..|++++.|+++.+|+++..+... ......|.+.|-.++|+| ....+++++.|.
T Consensus 13 ~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-----~~~~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 13 RRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-----ELVYRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred hHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-----hhcccCCCcchhhheeCCCCCcceEEecCCc
Confidence 35678999999999999999999999999999999998774322 233345778899999998 677899999999
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+|++||.+++++........+.+ -+.|+|+|++++.++.|..|...|.++.+.....+... .+.-++|+.++..
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~--- 161 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDL--- 161 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCE---
Confidence 99999999999987776555555 57899999999999999999999999988877765433 4788899966664
Q ss_pred EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV 294 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 294 (301)
++.....|.|.|......+++..++.|.....++.|+|+|+++|+|+.|..+.+||++..-+++.+ ..+ .-+|..+
T Consensus 162 --Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-sRl-dwpVRTl 237 (313)
T KOG1407|consen 162 --FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-SRL-DWPVRTL 237 (313)
T ss_pred --EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-ccc-cCceEEE
Confidence 233344689999999999999999999999999999999999999999999999999998888877 445 7899999
Q ss_pred EEccCCC
Q 022184 295 EFCPTQR 301 (301)
Q Consensus 295 ~~spdg~ 301 (301)
+||.|||
T Consensus 238 SFS~dg~ 244 (313)
T KOG1407|consen 238 SFSHDGR 244 (313)
T ss_pred EeccCcc
Confidence 9999996
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-31 Score=219.84 Aligned_cols=237 Identities=15% Similarity=0.166 Sum_probs=187.1
Q ss_pred ecccc-ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-------------------------------------
Q 022184 56 TYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT------------------------------------- 97 (301)
Q Consensus 56 ~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~------------------------------------- 97 (301)
.+.+. .|.+.|.++.|++||+|||+|+.|+.|+||.+...+.
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 45566 8999999999999999999999999999999976111
Q ss_pred -------cc-c-------ccc-ccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 98 -------DI-N-------LLA-KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 98 -------~~-~-------~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
.. . +.. ......+|.+.|..+.||.++ +|++++.|.+|++|++...+++..+ .|.+.|+|++
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVa 416 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVA 416 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEEE
Confidence 00 0 000 011223467889999999754 8999999999999999988886554 7889999999
Q ss_pred ecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
|+| |.++|++|+-|+.++||++...+...-...+ ..|++++|.|||+. ++.|+.+|.+++|+....+.....
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEee
Confidence 999 8889999999999999999887766555433 46999999999998 788999999999999876654322
Q ss_pred ec--c------CCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 241 RL--L------RKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 241 ~~--~------~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.. + ...|+.+.|.|.. ..+++.+.|.+|+|||.++.+++..+...+....-....|+.||+
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC
Confidence 11 1 2379999999843 468888899999999999888888876444334456788888885
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-31 Score=212.15 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=208.4
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccc-cCCcceEEEECCCCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~ 82 (301)
...|+++.|+++ +.++|+|. .++.++||+...... ...+.+ |...|.+++|. +..+.+|+
T Consensus 217 ~~~vtSv~ws~~---G~~LavG~------~~g~v~iwD~~~~k~--------~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 217 EELVTSVKWSPD---GSHLAVGT------SDGTVQIWDVKEQKK--------TRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred CCceEEEEECCC---CCEEEEee------cCCeEEEEehhhccc--------cccccCCcCceeEEEecc--CceEEEec
Confidence 578999999988 78999988 566679988754432 233555 99999999997 67899999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|+.|..+|+...+..... ...|...|..++|++|++++|+|+.|+.+.|||....++...+..|...|..++|
T Consensus 278 r~~~I~~~dvR~~~~~~~~------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVST------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred CCCcEEEEEEecchhhhhh------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence 9999999999887653331 2347789999999999999999999999999999888888889999999999999
Q ss_pred cC-CCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 163 ~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
+| ....||+|+ .|+.|++||..+++.+..+... ..|..+.|++..+.+. ...|..+..|.||+..+.+.+..
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg--sQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG--SQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccC--CceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence 99 566888865 7999999999999998888643 4699999999998732 35566778999999999999999
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999764
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.4e-31 Score=199.35 Aligned_cols=254 Identities=14% Similarity=0.192 Sum_probs=202.0
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+++|..++|.........++.++ .|.++++|.++.....+.. ...-.||...|.++...++|..+++|+
T Consensus 143 ht~~ik~v~~v~~n~~~~~fvsas------~Dqtl~Lw~~~~~~~~~~~----~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 143 HTGPIKSVAWVIKNSSSCLFVSAS------MDQTLRLWKWNVGENKVKA----LKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCcceeeeEEEecCCccceEEEec------CCceEEEEEecCchhhhhH----HhHhcccccceeEEEecCCCCeEEeec
Confidence 468899899976544444566655 7778899999987654422 233459999999999999999999999
Q ss_pred cCCcEEEEEEcCCccc-----cc-------------cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc
Q 022184 83 TNGGCKLFEVYGGATD-----IN-------------LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL 144 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~-----~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~ 144 (301)
.|..|.+|+.+..... .. .-.+......|..+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 9999999994322110 00 0000112235778999999988 678999999999999999999
Q ss_pred ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--e-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
..+..+. ....+.+++.+|..++|++|+.|..+++||.|++. . ..++.+| ...|.++.|+|...+. +++++
T Consensus 292 ~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~----~~S~S 365 (423)
T KOG0313|consen 292 GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQ----LVSGS 365 (423)
T ss_pred cceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCCCceE----EEEEe
Confidence 8876664 34689999999999999999999999999998753 2 3445544 5589999999998864 68999
Q ss_pred CcceEEEEEccCce-EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 222 DKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 222 ~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.|+++++||+++.+ ++..+..|...|.++.|. ++.+|++|+.|++|+|+.-.
T Consensus 366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999999887 888999999999999997 46699999999999999754
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-30 Score=197.81 Aligned_cols=245 Identities=16% Similarity=0.146 Sum_probs=203.1
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC---eEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 109 (301)
.||.+++|+..... ...+.+|.++|.+++|.-... .|++++.|.++++|.++.++........ ..
T Consensus 123 YDg~~riWd~~Gk~---------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~---~~ 190 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKS---------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKV---CR 190 (423)
T ss_pred cCCeeEEEecCCce---------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhH---hc
Confidence 78888999876544 455789999999999854333 5999999999999999888764443322 12
Q ss_pred CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-------------------------cceecccccCCccEEEEEecC
Q 022184 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFSL 164 (301)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~~ 164 (301)
.|...|.+++..++|..+++|+.|.+|.+|+..+ +.++..+.+|..+|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 6889999999999999999999999999999311 112345667889999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---Eeeeee
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKR 241 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~ 241 (301)
...+++++.|.+|+.||+.++.....+... ....++..+|..+. +++++.|..+++||.+++. ....+.
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEeee
Confidence 778999999999999999999998888754 35899999998886 7999999999999998764 346788
Q ss_pred ccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCce-eeccccccccCccEEEEEEccC
Q 022184 242 LLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~spd 299 (301)
+|++.|.++.|+|.. ..|++++.|+++++||+++.+ ++..+ .+| ...|.++.|+.-
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWNEG 400 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEeccCC
Confidence 999999999999954 678899999999999999887 66666 678 899999999754
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-29 Score=188.02 Aligned_cols=265 Identities=12% Similarity=0.112 Sum_probs=207.9
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+++|.++.|+++ +.++++.. .|..+++|+..... ....+..++-.|..++|......++.++
T Consensus 13 ~~~~i~sl~fs~~---G~~litss------~dDsl~LYd~~~g~--------~~~ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDD---GLLLITSS------EDDSLRLYDSLSGK--------QVKTINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred CCCceeEEEecCC---CCEEEEec------CCCeEEEEEcCCCc--------eeeEeecccccccEEEEecCCceEEEcc
Confidence 4789999999988 55666533 66788998775332 1234555677788999987777777666
Q ss_pred c--CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 83 ~--d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
. |.+|+..++.+++.... ...|...|..++.+|-+..+++++.|++|++||++..++...+.....+ .+
T Consensus 76 tk~d~tIryLsl~dNkylRY-------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~ 146 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRY-------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA 146 (311)
T ss_pred CCCCCceEEEEeecCceEEE-------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence 6 88999999998886322 2347889999999998899999999999999999977765444333333 47
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEee--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
+|.|+|-++|++.....|++||+|.- .+...+.. ......+.+.|||||+. ++.+...+.+++.|.-+|..
T Consensus 147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence 89999999999988889999999863 33333332 23345889999999998 56677888999999999998
Q ss_pred eeeeeccCCC---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 237 IGHKRLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 237 ~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
+..+..+... .-..+|+||++++++|+.||+|.+|++++++....+...+ .+++.++.|+|.
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPR 286 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCc
Confidence 8777766533 2567899999999999999999999999999988886556 889999999984
No 65
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-30 Score=190.08 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=182.0
Q ss_pred eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeec
Q 022184 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGV 132 (301)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 132 (301)
....+..|.+++++++. +++++|+|+.|.+|+|||+...... ...+.|.+.|+++.|.+.-. .|++|++
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-------g~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-------GILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-------cceeccccceEEEEecCCcchhheeeecC
Confidence 35567899999999999 5899999999999999999887652 23345789999999999665 8999999
Q ss_pred CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (301)
Q Consensus 133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (301)
||.|.+|+....+.+..+..|.+.|+.++.+|.+++.++.+.|+.+++||+-.|+....+...+. .+.+.|+|.|.+.
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHF 183 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999998887666654443 4558888888863
Q ss_pred eEEE----------------------------------EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE--cCCC
Q 022184 213 FLFC----------------------------------TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI--SLDG 256 (301)
Q Consensus 213 ~~~~----------------------------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--s~~~ 256 (301)
++.. +++|++++.|.+||.....+...+.+|...|-.+.+ .|++
T Consensus 184 ~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 184 VVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 3321 578899999999999998899999999999999885 5678
Q ss_pred CEEEEeeCCCcEEEEeCCCc
Q 022184 257 KYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 257 ~~l~~~~~d~~i~i~~~~~~ 276 (301)
.+|++++.||.|++||++..
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 99999999999999999865
No 66
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=1.1e-30 Score=201.94 Aligned_cols=259 Identities=14% Similarity=0.149 Sum_probs=198.1
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCC-eEEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DFVC 80 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~ 80 (301)
.+.|+.+...| .+..++|+++ ..+.+.||++......... .......+.+|.+.-++++|++... .|++
T Consensus 124 ~gEVnRaRymP--Qnp~iVAt~t------~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 124 DGEVNRARYMP--QNPNIVATKT------SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred CccchhhhhCC--CCCcEEEecC------CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 34566666663 3466777655 5566789988765543322 2234457899999899999999554 8889
Q ss_pred EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCC--CcceecccccCCccE
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSV 157 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i 157 (301)
++.|++|.+||+..................|...|..++|++ +..+|++++.|+.+.|||++ +.+......+|.+++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999999876553222222233445788999999999 66788999999999999999 455556677888999
Q ss_pred EEEEecC-CCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184 158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 158 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 235 (301)
.+++|+| ++..||+++.|++|++||+|+.+ ++..+..|. ..|..+.|+|....+ +++++.|+.+.+||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-dev~~V~WSPh~etv----LASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DEVFQVEWSPHNETV----LASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cceEEEEeCCCCCce----eEecccCCcEEEEeccccc
Confidence 9999999 56689999999999999999754 456666554 469999999998863 7889999999999986421
Q ss_pred --------------EeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCC
Q 022184 236 --------------KIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 236 --------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~ 275 (301)
.+....+|...|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2344567788999999999875 567778999999999863
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.7e-30 Score=185.05 Aligned_cols=212 Identities=18% Similarity=0.209 Sum_probs=184.4
Q ss_pred ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (301)
..+..|+++|.++.|+-+|+|.++++.|.+|++|+...+.... ....|...|..++.+.|...|++|+.|..+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-------tYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-------TYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-------eecCCCceeeeccccccccccccCCCCceE
Confidence 4578899999999999999999999999999999998877622 223466789999999999999999999999
Q ss_pred EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
.+||+++|+..+++.+|...|..+.|+.+...+++|+.|.++++||.++. ++++.+....+ .|.++..+.. .
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-~V~Si~v~~h--e--- 157 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-GVSSIDVAEH--E--- 157 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-ceeEEEeccc--E---
Confidence 99999999999999999999999999999999999999999999999864 56666654444 4888877644 2
Q ss_pred EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
+++++.||+++.||++.++..... ...+|++++|++|++..++++.|+++++.|-.+|+++... .+|
T Consensus 158 --IvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY-kGh 224 (307)
T KOG0316|consen 158 --IVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY-KGH 224 (307)
T ss_pred --EEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh-ccc
Confidence 689999999999999999875433 4678999999999999999999999999999999998876 455
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=9.9e-31 Score=205.31 Aligned_cols=240 Identities=17% Similarity=0.253 Sum_probs=184.2
Q ss_pred eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
.+..+.+|+..|.++++.|.|.+|++|+.|.+|++||+.......+......+ .....|+++.|++.|..|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCc
Confidence 46678999999999999999999999999999999999877654433222111 1335789999999999999998889
Q ss_pred eEEEEeCCCccee------------cccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCce-EEEEee----cC
Q 022184 135 HLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA-WTFLTR----NS 196 (301)
Q Consensus 135 ~i~v~d~~~~~~~------------~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~----~~ 196 (301)
..+|+|-...+.. ....+|...+++.+|+|+.+ .|++++.||++++||+...+. +..++. ..
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999996543322 22345667899999999665 799999999999999976443 333332 22
Q ss_pred CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
.-+++.++|+|+|+. ++++..||.|.+|+..+... ......|.. .|+++.||+||++|++-+.|+++++|
T Consensus 317 Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred ccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 336899999999998 79999999999999865433 223345654 89999999999999999999999999
Q ss_pred eCCCcee-eccccccccCccEEEEEEccCCC
Q 022184 272 DVKKMEI-NHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
|++..+. +..........+-+.++||||.+
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCce
Confidence 9997653 33221111145678899999864
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-30 Score=213.25 Aligned_cols=242 Identities=12% Similarity=0.175 Sum_probs=200.4
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
|..+||..++|+|. ..+++.|| .|-+|++|.|+... +..++.||-+.|..+.|++.-.+++++
T Consensus 49 eHdGpVRgv~FH~~---qplFVSGG------DDykIkVWnYk~rr--------clftL~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPT---QPLFVSGG------DDYKIKVWNYKTRR--------CLFTLLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred ccCCccceeeecCC---CCeEEecC------CccEEEEEecccce--------ehhhhccccceeEEeeccCCCceEEEc
Confidence 56799999999988 56888777 77888999997543 356789999999999999999999999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---------------
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--------------- 146 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--------------- 146 (301)
|.|.+|+||+.++..+...+. .|...|.|..|+|....+++++-|.+|+|||+..-+.
T Consensus 112 SDDQTIrIWNwqsr~~iavlt-------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLT-------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEe-------cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 999999999999988743332 4778999999999989999999999999999842110
Q ss_pred --------------ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCC
Q 022184 147 --------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 147 --------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ 210 (301)
...+.+|...|.-++|+|.-..|++|++|..|++|.+..-+.- .+..+| .+.|.++-|+|...
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQD 263 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccc
Confidence 1234567778999999999999999999999999998755432 334444 44699999999988
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
. +++.++|++|++||+...+.+..++..++..+.++-+|..+++++|- |+-+.+|.++
T Consensus 264 l-----IlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkle 321 (1202)
T KOG0292|consen 264 L-----ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLE 321 (1202)
T ss_pred e-----eEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEc
Confidence 7 79999999999999999999999988888999999999998877774 4445555554
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1e-29 Score=191.57 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=193.8
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
+.+..|+|+.|+.+ +.++|+|+ .++.++||..+...... .+...-+.+.-+.|+|-+..|++|
T Consensus 104 gHKDSVt~~~Fshd---gtlLATGd------msG~v~v~~~stg~~~~--------~~~~e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHD---GTLLATGD------MSGKVLVFKVSTGGEQW--------KLDQEVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred CCCCceEEEEEccC---ceEEEecC------CCccEEEEEcccCceEE--------EeecccCceEEEEecccccEEEee
Confidence 34678999999998 78999988 67778999887665443 233446678889999999999999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc---------
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--------- 152 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------- 152 (301)
+.||.+..|.+.+.... .....|..++++-.|.|+|+.++++..||+|++||+.+++++.++..
T Consensus 167 ~~DGsvWmw~ip~~~~~-------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALC-------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred cCCCcEEEEECCCccee-------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 99999999999885331 11223778999999999999999999999999999998876543320
Q ss_pred ------------------------------------------CCccEEEEE---ecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184 153 ------------------------------------------AHKSVLDMD---FSLDSEFLATTSTDGSARIWKTEDGV 187 (301)
Q Consensus 153 ------------------------------------------~~~~i~~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~ 187 (301)
+...+.++. |+..=.+.|+|+.||+|.|||+...+
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 001122222 33333467788999999999998877
Q ss_pred eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267 (301)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 267 (301)
...... +...|..+.|-+ ..+ +++++.+|.|+.||.++++.+..+.+|...|.+++++|+++++++++.|+.
T Consensus 320 ~R~~c~--he~~V~~l~w~~-t~~-----l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 320 LRHICE--HEDGVTKLKWLN-TDY-----LLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred hheecc--CCCceEEEEEcC-cch-----heeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 766665 445699999999 555 688999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC
Q 022184 268 ICVVDVK 274 (301)
Q Consensus 268 i~i~~~~ 274 (301)
.+||++.
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999875
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=202.07 Aligned_cols=275 Identities=18% Similarity=0.217 Sum_probs=202.9
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG 85 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~ 85 (301)
-|.++++-|. +.-++.|+ .|..+++|+|......... ...........|.++.|++.|..|++.+...
T Consensus 169 ~Vsal~~Dp~---GaR~~sGs------~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 169 IVSALAVDPS---GARFVSGS------LDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred EEEEeeecCC---Cceeeecc------ccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4566677655 44455554 8999999999877654432 2222334456799999999999999888888
Q ss_pred cEEEEEEcCCcccccc-----ccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceecccccC------
Q 022184 86 GCKLFEVYGGATDINL-----LAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA------ 153 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------ 153 (301)
..+|+|.+..+..... +........|...++|.+|+|+ ...+++++.||++++||++..+....+..+
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 8999998765542211 1112334567789999999994 567899999999999999765543332221
Q ss_pred CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce--EEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
.-+++.++|+||++.||+|..||.|.+|+.+.... ...+...|. ..|+++.||++|++ +++.+.|.++++|
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKVW 391 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceeee
Confidence 12789999999999999999999999999865432 222322222 26999999999998 7999999999999
Q ss_pred EccCceE-eeeeecc--CCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 230 DISTWNK-IGHKRLL--RKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 230 d~~~~~~-~~~~~~~--~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
|+++.+. +....+. ..+-+.++|||+.++|++|+. .|.+.+||..+.+.++.+. .. ...|..+.|+|-
T Consensus 392 DLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~-~aSvv~~~Whpk 468 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-IS-TASVVRCLWHPK 468 (641)
T ss_pred eccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec-CC-CceEEEEeecch
Confidence 9998654 3222222 235577899999999999863 4789999999999888773 33 678999999983
No 72
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=185.97 Aligned_cols=266 Identities=12% Similarity=0.104 Sum_probs=207.9
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|.+++|+|. ...+++.|. -|+++++|++...+... + .....|.++|.+++|+.+|..+++++.
T Consensus 27 ~DsIS~l~FSP~--~~~~~~A~S------WD~tVR~wevq~~g~~~---~---ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 27 EDSISALAFSPQ--ADNLLAAGS------WDGTVRIWEVQNSGQLV---P---KAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred ccchheeEeccc--cCceEEecc------cCCceEEEEEecCCccc---c---hhhhccCCCeEEEEEccCCceEEeecc
Confidence 456889999973 245665544 89999999998753221 1 345678999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
|+.+++||+.+++. ...-.|.++|..+.|-+... .|++|+.|.+|+.||.++..++..+. -.+.++++.
T Consensus 93 Dk~~k~wDL~S~Q~--------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 93 DKQAKLWDLASGQV--------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred CCceEEEEccCCCe--------eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehh
Confidence 99999999999865 33445889999999988655 79999999999999999888876653 345666665
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc--eEee
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIG 238 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~ 238 (301)
.- ..+++.+..++.|.+|+++.+... .....+....+++++..++... .+.|+-+|.+.+..+..+ +.-.
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCce
Confidence 43 457888889999999999765432 2233334456899999998887 477888999999988765 3333
Q ss_pred eeeccCC---------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 239 HKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 239 ~~~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.++.|+. .|++++|+|.-..|++++.||++.+||-+....+... ..| ..+|++.+|+.+|.
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~-~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS-ETH-PQPITCCSFNRNGS 306 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc-CcC-CCccceeEecCCCC
Confidence 4555542 4778999999889999999999999999887777665 456 89999999999984
No 73
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-30 Score=206.86 Aligned_cols=228 Identities=13% Similarity=0.157 Sum_probs=201.7
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (301)
.+..+.++|.++.++|....++++-.+|.+.||+.++......+. -...+|++..|-+-.+++++|++|..|+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-------V~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-------VSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-------ecccchhhheeeeccceEEEecCCceEE
Confidence 455689999999999999999999999999999998876522221 1346889999999999999999999999
Q ss_pred EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (301)
||+.++++.+..+..|.+.|.+++.+|.-.+++++++|-.|++||.+.+- +.+++.+| ...|.+++|.|.....
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~nt---- 155 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNT---- 155 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccc----
Confidence 99999999999999999999999999999999999999999999998764 44555554 5569999999987763
Q ss_pred EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV 294 (301)
Q Consensus 217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 294 (301)
.++++-|++|++|.+.+..+..++.+|...|+++.+-+ |..+|++|+.|..|+|||.++..+++++ .+| ...|+.+
T Consensus 156 FaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v 233 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFV 233 (794)
T ss_pred eeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEE
Confidence 58899999999999999999999999999999999987 4579999999999999999999999988 689 9999999
Q ss_pred EEccC
Q 022184 295 EFCPT 299 (301)
Q Consensus 295 ~~spd 299 (301)
.|+|.
T Consensus 234 ~fhp~ 238 (794)
T KOG0276|consen 234 FFHPE 238 (794)
T ss_pred EecCC
Confidence 99984
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-29 Score=201.80 Aligned_cols=225 Identities=15% Similarity=0.158 Sum_probs=191.5
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.+.|+++.|+++|.+|++|..+|.|.|||....+....+. ..|...|.+++|+ +..+.+|+.++.|..+|++
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~------~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR------GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc------CCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 7899999999999999999999999999998776532221 1267899999997 6789999999999999999
Q ss_pred Ccceecc-cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 143 SLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 143 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
..+.... +..|...|..+.|++|++++|+|+.|+.+.|||....+++..+..|. ..|..++|+|-...++ +...|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~-aAVKA~awcP~q~~lL--AsGGGs 365 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT-AAVKALAWCPWQSGLL--ATGGGS 365 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc-eeeeEeeeCCCccCce--EEcCCC
Confidence 8876665 66788899999999999999999999999999998888888887664 5699999999887632 234456
Q ss_pred CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEe--eCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.|++|++||..+++.+..+.. ...|..+.|++..+-|+++ ..++.|.||+..+.+.+..+ .+| ...|..++++||
T Consensus 366 ~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH-~~RVl~la~SPd 442 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGH-TSRVLYLALSPD 442 (484)
T ss_pred cccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCC-cceeEEEEECCC
Confidence 799999999999998866543 5789999999998766665 45678999999998888877 789 999999999999
Q ss_pred CC
Q 022184 300 QR 301 (301)
Q Consensus 300 g~ 301 (301)
|+
T Consensus 443 g~ 444 (484)
T KOG0305|consen 443 GE 444 (484)
T ss_pred CC
Confidence 84
No 75
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.7e-31 Score=195.41 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=193.8
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccC-CCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
+....+.|..|+|||++|++++.||.|.+|+..+++....+..... ..+-+..+|.|+.||.|..++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 3456689999999999999999999999999999887554433222 234467899999999999999999999999999
Q ss_pred eCCCcceecccc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 140 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
.+.+|.+++.+. .|...|+++.|+.|+..+++++.|.++++.-+++|+++..+.+|.. .|+...|.++|.+ ++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-yvn~a~ft~dG~~-----ii 364 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-YVNEATFTDDGHH-----II 364 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc-cccceEEcCCCCe-----EE
Confidence 999999999887 6778999999999999999999999999999999999999998765 5999999999998 79
Q ss_pred EeCCcceEEEEEccCceEeeeeeccC--CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccc-cCccEEEE
Q 022184 219 QRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALV 294 (301)
Q Consensus 219 ~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~~ 294 (301)
+++.||+|++|+.++.+++..++... .+|.++-.-| +...++++...++|+|.++. |+.++.+..+. ..+..-+.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 99999999999999999987776543 5677877777 45789999999999999985 44444443322 13444555
Q ss_pred EEccCC
Q 022184 295 EFCPTQ 300 (301)
Q Consensus 295 ~~spdg 300 (301)
..||.|
T Consensus 444 ~lSpkG 449 (508)
T KOG0275|consen 444 ILSPKG 449 (508)
T ss_pred EecCCC
Confidence 667665
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.7e-29 Score=181.33 Aligned_cols=226 Identities=15% Similarity=0.220 Sum_probs=196.2
Q ss_pred ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeE
Q 022184 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL 136 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 136 (301)
..++||+.+++.+.++.+|.+|.+++.|.+..+|--.+++.. -....|.+.|.|+..+.+.+.+++|+.|.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl-------Gty~GHtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL-------GTYDGHTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee-------eeecCCCceEEEEEecCCcceeeecccccee
Confidence 347899999999999999999999999999999998777752 2334588999999999999999999999999
Q ss_pred EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCC-------CCceEEEEeecCCCCeeEEE
Q 022184 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE-------DGVAWTFLTRNSDEKIELCR 204 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~ 204 (301)
++||+++|+.+..+. ...+|..+.|+++|++++.+.++ +.|.++|++ ..++...+..+. ..++.+-
T Consensus 77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~ 154 (327)
T KOG0643|consen 77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSAL 154 (327)
T ss_pred EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeee
Confidence 999999999987764 45689999999999988877643 569999998 445566666554 4699999
Q ss_pred EccCCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 283 (301)
|.|-++. ++++.++|.|..||.++++. +.....|...|+.++++||..++++++.|.+-++||..+.+.+..+.
T Consensus 155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 9999998 89999999999999999754 55667888999999999999999999999999999999999998875
Q ss_pred ccccCccEEEEEEccC
Q 022184 284 RLHLGTSIALVEFCPT 299 (301)
Q Consensus 284 ~~~~~~~v~~~~~spd 299 (301)
. ..||++.+++|-
T Consensus 230 t---e~PvN~aaisP~ 242 (327)
T KOG0643|consen 230 T---ERPVNTAAISPL 242 (327)
T ss_pred e---cccccceecccc
Confidence 4 579999999983
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8e-29 Score=191.92 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=209.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce--eee---------CCceeccccccCCcceEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYT---------SPLVTYVFDESEGDPMTIAV 71 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~---------~~~~~~~~~~h~~~v~~~~~ 71 (301)
...+|+||+.+|+ ..++..++ .+++|.-|........ ... .+..... .+|...+.+++.
T Consensus 141 H~~s~~~vals~d---~~~~fsas------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av 210 (479)
T KOG0299|consen 141 HQLSVTSVALSPD---DKRVFSAS------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV 210 (479)
T ss_pred ccCcceEEEeecc---ccceeecC------CCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence 3568999999988 44555544 4445555544332211 111 1111111 489999999999
Q ss_pred CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (301)
Q Consensus 72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 151 (301)
++||++|++|+.|..|.||+.++.+... ....|.+.|.+++|-.....+++++.|..+++|+++....+.++.
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~-------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVK-------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhh-------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 9999999999999999999999887522 234578999999998888889999999999999999988888999
Q ss_pred cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (301)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 231 (301)
+|++.|.++....-++.+-+|+.|+++++|++.... ...+.. +...+.|++|-.+.. +++|+.+|.|.+|++
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg-~~~sidcv~~In~~H------fvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRG-GEGSIDCVAFINDEH------FVSGSDNGSIALWSL 355 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeC-CCCCeeeEEEecccc------eeeccCCceEEEeee
Confidence 999999999988777777778899999999994433 233333 355699999998877 599999999999999
Q ss_pred cCceEeeeeec-c-----------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeccccccccCccEEEEEEcc
Q 022184 232 STWNKIGHKRL-L-----------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 232 ~~~~~~~~~~~-~-----------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~sp 298 (301)
.+.+++..... | +..|++++..|...++++|+.+|.|++|.+..+ ..+..+......+.|++++|++
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSN 435 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEcc
Confidence 98877644321 1 126889999999999999999999999999887 2222222222378899999999
Q ss_pred CCC
Q 022184 299 TQR 301 (301)
Q Consensus 299 dg~ 301 (301)
+|+
T Consensus 436 sgk 438 (479)
T KOG0299|consen 436 SGK 438 (479)
T ss_pred CCC
Confidence 986
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.1e-29 Score=202.58 Aligned_cols=274 Identities=15% Similarity=0.156 Sum_probs=224.2
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce-eeeCCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
...++.+++|.|.+...+.+++ -..|.+..|.++..... ..........+.+|...|.+++++.+...++++
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~-------l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg 391 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVL-------LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG 391 (888)
T ss_pred chhheeEEEEEecCCcceeEEE-------eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence 4567889999988765544444 26688888888773322 111223345678999999999999988777776
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
..+.+++|+..+.++...+. .+.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|++++
T Consensus 392 -a~~SikiWn~~t~kciRTi~---------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 392 -AGESIKIWNRDTLKCIRTIT---------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred -CCCcEEEEEccCcceeEEec---------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 45669999999887743322 24788999999999999999999999999999988888889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCC-----CceEEEEee------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 162 FSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
.+||++.+++++.|.+|++||..- +.....+.. .-...|.++.+||||++ ++.+=-|+++++|-
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVyf 536 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVYF 536 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEEE
Confidence 999999999999999999999742 211111111 12345999999999998 67777899999999
Q ss_pred ccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+.+.+..-.+-+|.-||.++..|||++++++|+.|.+|+||-++=|.+-+.+ -+| ...|.++.|-|+.
T Consensus 537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAH-dDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAH-DDSVMSVQFLPKT 604 (888)
T ss_pred ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcc-cCceeEEEEcccc
Confidence 9999988889999999999999999999999999999999999999998888 578 8999999999963
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=195.60 Aligned_cols=240 Identities=13% Similarity=0.214 Sum_probs=193.4
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEec
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTT 83 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~ 83 (301)
..|+++.|..| +.++|.|+ ..|.++++++.+. .....+.+|+.+|..+.|+|+++ .|++|+.
T Consensus 69 ~~v~s~~fR~D---G~LlaaGD------~sG~V~vfD~k~r--------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 69 DVVYSVDFRSD---GRLLAAGD------ESGHVKVFDMKSR--------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred cceeEEEeecC---CeEEEccC------CcCcEEEeccccH--------HHHHHHhhccCceeEEEecccCCeEEEecCC
Confidence 45889999988 78999988 5566688874431 12456889999999999999554 6778888
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
|+.+++||+.+... ......|+..|+|.+|+| ++.++++|+.||.|++||.+..........|..+|..+.+
T Consensus 132 d~v~k~~d~s~a~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~ 204 (487)
T KOG0310|consen 132 DKVVKYWDLSTAYV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA 204 (487)
T ss_pred CceEEEEEcCCcEE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE
Confidence 89999999988763 123345889999999999 5668999999999999999887433333467789999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
-|.|..|++++. ..|++||+-+|.........|...|+|+.+..++.. +++++-|+.+++||+.+.+.+....
T Consensus 205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r-----LlS~sLD~~VKVfd~t~~Kvv~s~~- 277 (487)
T KOG0310|consen 205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR-----LLSGSLDRHVKVFDTTNYKVVHSWK- 277 (487)
T ss_pred cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce-----EeecccccceEEEEccceEEEEeee-
Confidence 999999999874 789999999665544443323346999999999987 8999999999999988888776554
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
..++|.+++.+|+++.++.|-.||.+.+-+...
T Consensus 278 ~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 478999999999999999999999888875443
No 80
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=194.41 Aligned_cols=240 Identities=13% Similarity=0.201 Sum_probs=196.7
Q ss_pred CCCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (301)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (301)
+...+.|.|+.|... +++.|. +|.++++|+++... ...++-+|.+.|..+.|+ ..++++
T Consensus 234 ~GHtGSVLCLqyd~r-----viisGS------SDsTvrvWDv~tge--------~l~tlihHceaVLhlrf~--ng~mvt 292 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDER-----VIVSGS------SDSTVRVWDVNTGE--------PLNTLIHHCEAVLHLRFS--NGYMVT 292 (499)
T ss_pred hcCCCcEEeeeccce-----EEEecC------CCceEEEEeccCCc--------hhhHHhhhcceeEEEEEe--CCEEEE
Confidence 356789999999833 777766 78889999997543 234578999999999996 458999
Q ss_pred EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
++.|.++.+||+...... ... .-...|...|+.+.|+ .++|++++.|.+|++|++.+++.++.+.+|...|.|+
T Consensus 293 cSkDrsiaVWdm~sps~i-t~r---rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl 366 (499)
T KOG0281|consen 293 CSKDRSIAVWDMASPTDI-TLR---RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL 366 (499)
T ss_pred ecCCceeEEEeccCchHH-HHH---HHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceeh
Confidence 999999999999876521 111 1123477889999995 5699999999999999999999999999999999988
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---- 236 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 236 (301)
.+. ++++++|+.|.+|++||+..|.++..+.+|.+ -|.++.|... . +++|+.||+|++||+..+..
T Consensus 367 QYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe-LvRciRFd~k--r-----IVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 367 QYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNK--R-----IVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred hcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH-hhhheeecCc--e-----eeeccccceEEEEecccccCCccc
Confidence 875 89999999999999999999999999988755 6999999643 3 79999999999999987543
Q ss_pred -----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184 237 -----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 237 -----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
+..+..|.+.|..+.| |...+++++.|.+|.|||..++...
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 2344556778888888 5668999999999999999876544
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.5e-29 Score=190.57 Aligned_cols=261 Identities=14% Similarity=0.175 Sum_probs=207.1
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
++++.-++. .+.+.+|+ .|..+.+++...+. . ...+.||...|+.+.++|+...+++++.|..
T Consensus 222 i~ald~~~s---~~~ilTGG------~d~~av~~d~~s~q--~------l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~ 284 (506)
T KOG0289|consen 222 ITALDIIPS---SSKILTGG------EDKTAVLFDKPSNQ--I------LATLKGHTKKITSVKFHKDLDTVITASADEI 284 (506)
T ss_pred eeEEeecCC---CCcceecC------CCCceEEEecchhh--h------hhhccCcceEEEEEEeccchhheeecCCcce
Confidence 444444433 35666666 44444666654433 1 4568999999999999999999999999999
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccEEEEEecC
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSL 164 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~~~~~ 164 (301)
|++|....... ......|..+|+.+..+|.|.||++++.|+...+.|++++..+...... .-.+++.+|+|
T Consensus 285 i~vws~~~~s~-------~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 285 IRVWSVPLSSE-------PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred EEeeccccccC-------ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 99999876653 2334458899999999999999999999999999999999887665432 23689999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 244 (301)
||.+|.+|..|+.+++||+.++.....+.+ |.++|..++|+.+|-+ ++++.+|+.|++||++..+....+...+
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence 999999999999999999999998888887 4568999999999987 7899999999999999887666655433
Q ss_pred -CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeccccccccCccEEEEEEccC
Q 022184 245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 245 -~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
..+.++.|++.|.+|+.++.|=+|++++-.+ ...+..+ ..| .+..+.+.|..+
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~ 487 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEH 487 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeeccc
Confidence 4799999999999999998876677776443 3444444 455 667778877653
No 82
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.9e-28 Score=203.73 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=174.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccc------ccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCe
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL------LAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH 135 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 135 (301)
-..|.....++++..+++++.+.....|+...+...... .........|.+.|.+++|+| ++++|++|+.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 445666666677666777777776777775544321110 000112335788999999999 8899999999999
Q ss_pred EEEEeCCCcc-------eecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184 136 LRIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 136 i~v~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (301)
|++||+.++. .+..+.+|...|.+++|+|++ ++|++++.|+.|+|||+++++.+..+..|. ..|.+++|+|
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-~~V~sla~sp 178 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-DQITSLEWNL 178 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-CceEEEEEEC
Confidence 9999997642 345667788899999999975 699999999999999999998888877654 4699999999
Q ss_pred CCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC-cEEEEEcCCCCEEEEee----CCCcEEEEeCCCceeeccc
Q 022184 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~d~~i~i~~~~~~~~~~~~ 282 (301)
++.. +++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++++ .|+.|++||+++.......
T Consensus 179 dG~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 179 DGSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9997 789999999999999999988888877654 45678999887777654 4789999999876433222
Q ss_pred cccccCccEEEEEEccCCC
Q 022184 283 KRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 283 ~~~~~~~~v~~~~~spdg~ 301 (301)
...+....+....|+||++
T Consensus 254 ~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred eccCCCCceEEEEEcCCCC
Confidence 1222134566667888763
No 83
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=9.7e-31 Score=203.63 Aligned_cols=234 Identities=17% Similarity=0.198 Sum_probs=193.4
Q ss_pred eeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC
Q 022184 55 VTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD 133 (301)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 133 (301)
..+.+.+|+..|.++.|.| .+.+|++++.|+.|+||++....... .....|..+|..++|+++|..+++++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l------rtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL------RTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee------hhhhcchhhhhhhhccccCCeeeeeecc
Confidence 4567899999999999999 88899999999999999998733211 2344588999999999999999999999
Q ss_pred CeEEEEeCCCcceecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (301)
Q Consensus 134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (301)
+.|++||.++|+++..+. ....++++.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|- +.|..+.|-++|++
T Consensus 280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-g~i~~i~F~~~g~r- 356 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-GAILDITFVDEGRR- 356 (503)
T ss_pred eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh-hheeeeEEccCCce-
Confidence 999999999999987764 34578999999988 789999999999999999999888876554 46999999999998
Q ss_pred eEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec--cccccc-cC
Q 022184 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH-LG 288 (301)
Q Consensus 213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~--~~~~~~-~~ 288 (301)
.++.++|+.+++|+.+..-++..... ......++..+|+++++++-+.|+.|.+|.+...-... ....+| ..
T Consensus 357 ----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 357 ----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred ----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 78899999999999988766644332 23466789999999999999999999999976532221 122444 14
Q ss_pred ccEEEEEEccCCC
Q 022184 289 TSIALVEFCPTQR 301 (301)
Q Consensus 289 ~~v~~~~~spdg~ 301 (301)
+.-..+.|||||+
T Consensus 433 Gys~~v~fSpDG~ 445 (503)
T KOG0282|consen 433 GYSCQVDFSPDGR 445 (503)
T ss_pred CceeeEEEcCCCC
Confidence 5677899999985
No 84
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.2e-30 Score=184.17 Aligned_cols=204 Identities=14% Similarity=0.159 Sum_probs=178.7
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d 140 (301)
.|.--|.+++|+.|.++|++|+.+..+++||++..+.+. ...-.|.+.|+.+-|....+.|+++++|++||+||
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------hhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 577889999999999999999999999999998876633 23335789999999999888999999999999999
Q ss_pred CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
.++++.+..+. -..+|+++.++++|++|.++ ..+.|+.||..+-..+..+..+. .|.+...+|+... ++.+
T Consensus 172 ~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~--nV~SASL~P~k~~-----fVaG 242 (334)
T KOG0278|consen 172 HRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC--NVESASLHPKKEF-----FVAG 242 (334)
T ss_pred eccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc--ccccccccCCCce-----EEec
Confidence 99999987774 45689999999999866554 56889999999999888887654 4899999999865 6889
Q ss_pred CCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184 221 GDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
++|..++.||..+++.+..+ ++|.++|.++.|+|+|...++|++||+|++|....++..
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999998875 889999999999999999999999999999999776544
No 85
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=192.85 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=190.1
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
...||..+.|+||. ..++++| .+..+.+|+.+....... --.+|...+.+++|.|||..+++|+
T Consensus 268 h~~~V~yi~wSPDd--ryLlaCg-------~~e~~~lwDv~tgd~~~~-------y~~~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDD--RYLLACG-------FDEVLSLWDVDTGDLRHL-------YPSGLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred ccCceEEEEECCCC--CeEEecC-------chHheeeccCCcchhhhh-------cccCcCCCcceeEEccCCceeEecC
Confidence 35789999999883 3444443 344456777665442211 1133568899999999999999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|+++..||+++..... + . ......|.+++..+||+++++.+.|..|++++.++..... +...+.+|++++.
T Consensus 332 ~dr~i~~wdlDgn~~~~--W----~-gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~i 403 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILGN--W----E-GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSI 403 (519)
T ss_pred CCCcEEEecCCcchhhc--c----c-ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEE
Confidence 99999999998765310 0 0 0122568999999999999999999999999987765532 3345679999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCC-CcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDG-TKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+.|++++++.-.+..+++||++..+.+..+.++..+ .+-.-+|---. .. +++|++|+.|++|+..+++++..+
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f-----iaSGSED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF-----IASGSEDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce-----EEecCCCceEEEEEccCCceeEee
Confidence 999999999999999999999988888777766543 22233444333 33 799999999999999999999999
Q ss_pred eccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCc
Q 022184 241 RLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 241 ~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~ 276 (301)
.+|...|++++|+|. ..++|+++.||+|+||.....
T Consensus 479 sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999994 578999999999999987643
No 86
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=6e-29 Score=192.32 Aligned_cols=288 Identities=13% Similarity=0.129 Sum_probs=206.8
Q ss_pred ceeEEEeeeecCCCc-------cEEEecCCccccCCcCceeEeeeCCCcc-------eeee-----------C-Cceecc
Q 022184 5 GTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTT-------SVYT-----------S-PLVTYV 58 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~-----------~-~~~~~~ 58 (301)
-|-..+.|.|+.... .-+++|..... +.++.+.|-++..... .... . ......
T Consensus 41 WPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~-~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~ 119 (422)
T KOG0264|consen 41 WPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSG-SEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQ 119 (422)
T ss_pred ccceEEEEcCCcccccCCCceeEEEEEEeecCC-CCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEE
Confidence 467789999973321 35566664332 2667777775422110 0000 0 011112
Q ss_pred ccccCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccc---cccCCCCCCCCCeeEEEEee-CCCEEEEeecC
Q 022184 59 FDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD 133 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 133 (301)
.-.|.+.|+.+...|+...| |+.+..+.+.|||........... ...+....|...-.+++|++ ..-.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 24589999999999977654 566777999999998765433321 11223344666678899999 44578999999
Q ss_pred CeEEEEeCCCcce-------ecccccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCC--CceEEEEeecCCCCeeEE
Q 022184 134 GHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELC 203 (301)
Q Consensus 134 g~i~v~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~v~~~ 203 (301)
+.|++||+..... ...+.+|...|..++|+| +...|++++.|+.+.|||+|+ .++...... +...+.++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~ 278 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCV 278 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeEE
Confidence 9999999965432 234567778999999999 556899999999999999995 444444444 45679999
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCceee--
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEIN-- 279 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~~-- 279 (301)
+|+|-+..+ +++++.|++|.+||+|+.+ ++..+..|+..|..+.|||+ ...||+++.|+++.+||+..-...
T Consensus 279 ~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 279 AFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred EeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 999998763 7899999999999999764 56788999999999999996 578999999999999999742111
Q ss_pred -----------ccccccccCccEEEEEEccC
Q 022184 280 -----------HWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 280 -----------~~~~~~~~~~~v~~~~~spd 299 (301)
..+..+| ...|..+.|+|+
T Consensus 355 ~eda~dgppEllF~HgGH-~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGH-TAKVSDFSWNPN 384 (422)
T ss_pred hhhhccCCcceeEEecCc-ccccccccCCCC
Confidence 1233678 889999999996
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=186.91 Aligned_cols=222 Identities=12% Similarity=0.178 Sum_probs=180.4
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc---ccccc--------cccCCCCCCCCCeeEEEEeeCC
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---DINLL--------AKKMPPLQDAGPQKCLSFSVDG 124 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~---~~~~~--------~~~~~~~~~~~~v~~~~~s~~~ 124 (301)
...+..|+.++.+.+|+|||.++|+|+.|..|+|+|++..-. ..... ........|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 456788999999999999999999999999999999972211 00000 0011234577899999999999
Q ss_pred CEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCe
Q 022184 125 SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKI 200 (301)
Q Consensus 125 ~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v 200 (301)
..|++|+.|++|++||+..... ..+......+|.++.|+|.|.+|+.|.+-..+++||+++-++...-. ..+.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999999965433 23333445689999999999999999999999999999987765443 2345579
Q ss_pred eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 278 (301)
+++.+++.++. .++++.||.|++||--+.+++..+. .|. ..|.+..|..+|+|+++.+.|..+++|++.++..
T Consensus 265 ~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 265 TQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 99999999997 6899999999999988888887664 343 5789999999999999999999999999999887
Q ss_pred eccc
Q 022184 279 NHWS 282 (301)
Q Consensus 279 ~~~~ 282 (301)
+...
T Consensus 340 l~~Y 343 (430)
T KOG0640|consen 340 LKEY 343 (430)
T ss_pred EEEE
Confidence 7654
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=201.66 Aligned_cols=242 Identities=13% Similarity=0.230 Sum_probs=204.1
Q ss_pred CCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCC
Q 022184 16 PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG 95 (301)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~ 95 (301)
..+.+++.+|| .|+.|++|.+........ .+ ....++.|.+.|+.++...+++.|++++.|-+|++|+....
T Consensus 34 a~~~ryLfTgG------RDg~i~~W~~~~d~~~~s-~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 34 APNGRYLFTGG------RDGIIRLWSVTQDSNEPS-TP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred CCCCceEEecC------CCceEEEeccccccCCcc-cc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC
Confidence 33456777766 788889999876654321 11 24568899999999999999999999999999999999766
Q ss_pred ccccccccccCCCCCCCCCeeEEEE-eeCCCEEEEeecCCeEEEEeCCCcce--e--------cccc-cCCccEEEEEec
Q 022184 96 ATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFS 163 (301)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~v~d~~~~~~--~--------~~~~-~~~~~i~~~~~~ 163 (301)
...- ....-.|...|.|+++ .++..++|+|+-|+.|.+||++++.. + ..+. ++..+|++++.+
T Consensus 106 ~~~c-----~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 106 NTFC-----MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred cchh-----HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 4100 0122248899999999 77888999999999999999997732 1 1222 556789999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 243 (301)
+.|..|++|+..+.+++||.++++.+..+.+|.. .|..+..++||.. +++++.||+|++||+...+++.++..|
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred CcceEEEecCcccceEEeccccccceeeeecccc-ceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEec
Confidence 9999999999999999999999999999997766 5999999999998 899999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
...|+++..+|+-..+++|+.||.|..=|+++.
T Consensus 255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999999884
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.6e-28 Score=208.31 Aligned_cols=258 Identities=17% Similarity=0.175 Sum_probs=203.0
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc----------ceeeeCCceeccccccCCcceEEEEC
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT----------TSVYTSPLVTYVFDESEGDPMTIAVN 72 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~h~~~v~~~~~~ 72 (301)
..+.|.|+.|++| +.++|.|+ .|..+.||.+.... ......-.....+.+|...|..++|+
T Consensus 68 h~~sv~CVR~S~d---G~~lAsGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 68 HDGSVNCVRFSPD---GSYLASGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccCceeEEEECCC---CCeEeecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 4588999999999 78999988 55667999998411 11112234566789999999999999
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (301)
Q Consensus 73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 152 (301)
|++.+|++++.|++|.+|+..+.+... ....|.+.|..+.|.|-|++||+-+.|++|++|+..+......+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~-------vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLK-------VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred CCccEEEEecccceEEEEccccceeee-------eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeecc
Confidence 999999999999999999998885522 2234788999999999999999999999999999776555444433
Q ss_pred CC------ccEEEEEecCCCcEEEEEeC----CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccC--------CCc---
Q 022184 153 AH------KSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD--------GTK--- 211 (301)
Q Consensus 153 ~~------~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~--- 211 (301)
+. ..+..+.|+|||.+|++... -..+.|.+-.+.+.-..+.+|+. ++.+++|+|. |..
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence 22 35788999999999998642 23688888777776777777665 8999999982 111
Q ss_pred -ceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 212 -PFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 212 -~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
.++.++++|+.|++|.||.....+++... ......|..++|+|||..|++++.||+|.++..+..+
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 13346899999999999999877776433 2345789999999999999999999999999987643
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.4e-28 Score=181.48 Aligned_cols=240 Identities=14% Similarity=0.197 Sum_probs=181.4
Q ss_pred CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccc-cccccC-------------------------
Q 022184 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKM------------------------- 106 (301)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~-~~~~~~------------------------- 106 (301)
|.....+++|.+.|++++|+.||++|++++.|++|++|+++....... ......
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 445567899999999999999999999999999999999976543000 000000
Q ss_pred --------------------------CCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 107 --------------------------PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 107 --------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
....|...+..+-...++.+|++++.|..|.+|+++ |+.+..+...+..-+..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 000122233344444466789999999999999998 77777776666677888
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCC---CC-----ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
+.+|+|+++++++.--.|++|.+- .| ..+..+++|. ..|..++|+++... +++.+.||++++||..
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence 999999999999998999999863 22 2234566654 46999999999998 7999999999999975
Q ss_pred Cce-------Eeeee----eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 233 TWN-------KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 233 ~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
-.- .+... .........+.++|+|+.||.+.. ..+++|..++++....++..| ...|.+++|+||||
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK 386 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence 211 11111 111234457999999998888754 479999999999998888899 99999999999996
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.9e-27 Score=175.66 Aligned_cols=261 Identities=14% Similarity=0.101 Sum_probs=202.6
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|..+.|+|. ...++|. +-|+.+++|+++.+...+ .-.|..++.+++|.+ ...+++|+.
T Consensus 13 ~d~IS~v~f~~~--~~~LLvs-------sWDgslrlYdv~~~~l~~---------~~~~~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPS--SSDLLVS-------SWDGSLRLYDVPANSLKL---------KFKHGAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred hhceeeEEEcCc--CCcEEEE-------eccCcEEEEeccchhhhh---------heecCCceeeeeccC-CceEEEecc
Confidence 456899999944 3444443 388899999998763221 235789999999987 457899999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
||.|+.+|+.++.. .....|..++.|+.+++....+++|+.|++|++||.+.......+. ..+.|.++...
T Consensus 74 dg~vr~~Dln~~~~--------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~ 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNE--------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS 144 (323)
T ss_pred CceEEEEEecCCcc--------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc
Confidence 99999999998865 4445688999999999988889999999999999998744443332 33488888776
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----eEee
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKIG 238 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~ 238 (301)
++.|+.|+.|..+.+||+++....... ...-...++++++-|++.- .+.++-||+|.+=.++.. +...
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhce
Confidence 778999999999999999987654422 2233456899999997776 577888999988766654 2233
Q ss_pred eeeccC---------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 239 HKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 239 ~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.++.|. .+|++++|+|--..+++|+.||.|.+||+.+.+.+..+ ... ...|.+++|+.||.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~-~~~-~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL-AKY-ETSISSLSFSMDGS 287 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc-cCC-CCceEEEEeccCCC
Confidence 444443 37999999999899999999999999999999888876 334 57799999999983
No 92
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.6e-28 Score=201.88 Aligned_cols=254 Identities=15% Similarity=0.216 Sum_probs=207.7
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..+.|..|..+ .++.|. .++++++|+..... . ....+.+|.+.|.++++...+.+|++|+.|
T Consensus 209 ~~~~~~q~~~~-----~~~~~s------~~~tl~~~~~~~~~--~-----i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D 270 (537)
T KOG0274|consen 209 HVVLCLQLHDG-----FFKSGS------DDSTLHLWDLNNGY--L-----ILTRLVGHFGGVWGLAFPSGGDKLVSGSTD 270 (537)
T ss_pred chhhhheeecC-----eEEecC------CCceeEEeecccce--E-----EEeeccCCCCCceeEEEecCCCEEEEEecC
Confidence 34566677733 566655 56667777654322 2 123388999999999998878899999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (301)
.++++||..++++...+. .|...+.++... ...+++|+.|.+|++|+++++..+..+.+|..+|.++..+
T Consensus 271 ~t~rvWd~~sg~C~~~l~-------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQ-------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred CcEEeEecCCCcEEEEec-------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 999999999998743332 366777777764 4578889999999999999999988887799999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeecc
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLL 243 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~ 243 (301)
+.++++|+.|++|++||+.+++++..+.+|. ..|.++.+.+. .. +++++.|+.|++||+++. +++..+..|
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT-GRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCc-ceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcCC
Confidence 8899999999999999999999999999864 57999988776 44 689999999999999999 888888888
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s 297 (301)
..-+..+.+ .+++|++++.|+.|++||..+++.++.+...| ...|+.+++.
T Consensus 413 ~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~ 463 (537)
T KOG0274|consen 413 TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALG 463 (537)
T ss_pred ccccccccc--ccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecC
Confidence 887766554 57899999999999999999999999885435 6788888774
No 93
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.5e-28 Score=186.10 Aligned_cols=186 Identities=37% Similarity=0.593 Sum_probs=156.6
Q ss_pred CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 022184 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 193 (301)
.-..++|+++|..+++++.||.+|+|++++...+.....|+..|.++.|+|||+.|++.+.| ..+||+.+++..+....
T Consensus 146 ~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred cceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 33889999999999999999999999999988888888999999999999999999999999 99999999998777665
Q ss_pred -ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184 194 -RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267 (301)
Q Consensus 194 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 267 (301)
...+.....+.|+.|+....+.+++....-+.|..||+..+.. ..........|++++.|+||++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 3344567788999887555555566666677788877655432 1122222457999999999999999999999
Q ss_pred EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
|.|++..+.+.++..++.| ...|+.+.|+||.+
T Consensus 305 Vai~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSR 337 (398)
T ss_pred EEEEEeceeeeeEeehhhh-eeeeeeEEEcCCcC
Confidence 9999999999999999999 99999999999964
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=185.74 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=197.5
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 143 (301)
..+.++...|....+++|+.|..+.++|...++... ....|...|+.+.|+|+...+++++.|..|+||....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~-------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA-------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh-------hccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 457888888887899999999999999998877622 2234678899999999999999999999999999988
Q ss_pred cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184 144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD 222 (301)
Q Consensus 144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
.........|..+|+.+..+|.|.||++++.|++..+.|++++..+...... .+-.+++.+|+|||.. +.++..
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~ 367 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP 367 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence 7777778889999999999999999999999999999999999998877643 3345899999999986 789999
Q ss_pred cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
|+.|++||+.++..+..+.+|.++|..++|+.+|-||++++.|+.|++||++..+....+.... ...|.++.|.+.|+
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCC
Confidence 9999999999999999999999999999999999999999999999999999988777664333 55799999988874
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=187.85 Aligned_cols=236 Identities=15% Similarity=0.141 Sum_probs=193.3
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.++|+.+.|-++ +.+++..+ .|+.+++|..+... ...++.+|++.|+++.|......+++++.
T Consensus 219 ~g~it~~d~d~~---~~~~iAas------~d~~~r~Wnvd~~r--------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 219 LGNITSIDFDSD---NKHVIAAS------NDKNLRLWNVDSLR--------LRHTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred CCCcceeeecCC---CceEEeec------CCCceeeeeccchh--------hhhhhcccccceeeehhhccccceeeccc
Confidence 478999999877 44444433 66777999987543 25678999999999999887777999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|.+|++||+....+..... ....+..+..+ ...+++|..|+.|++||.++..+....+.+ +.|+++..+
T Consensus 282 DRtiK~WDl~k~~C~kt~l--------~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls 350 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVL--------PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS 350 (459)
T ss_pred cchhhhhhhhhhheecccc--------ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeec
Confidence 9999999999876632222 23445566655 557889999999999999999887777554 599999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+++..+.+++.|.++.+.|+++.+....+.... ....+.+.|||++.+ +++|+.||.|+||++.++++...+
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-----vaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY-----VAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce-----eeeccCCCcEEEEEccCceEEEEe
Confidence 999999999999999999999988877765321 223788999999998 899999999999999999988777
Q ss_pred eccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 241 RLLRK--PASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 241 ~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 66554 499999999999999999999999993
No 96
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.3e-27 Score=197.47 Aligned_cols=232 Identities=9% Similarity=0.064 Sum_probs=167.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~ 81 (301)
...+|++++|+|+. ..++|+|+ .|+.+++|++................+.+|...|.+++|+|++..+ +++
T Consensus 73 H~~~V~~lafsP~~--~~lLASgS------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 73 HTSSILDLQFNPCF--SEILASGS------EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCCCEEEEEEcCCC--CCEEEEEe------CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 45789999999752 46788766 7788899998643321111111233578899999999999998764 688
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEE--
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD-- 159 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~-- 159 (301)
+.|++|++||+.+++.... +.+...|.+++|+|+|++|++++.|+.|++||+++++.+..+..|.+.+..
T Consensus 145 S~DgtIrIWDl~tg~~~~~--------i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQ--------INMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKN 216 (568)
T ss_pred eCCCeEEEEECCCCcEEEE--------EecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEE
Confidence 9999999999987764211 224567999999999999999999999999999999988888777764332
Q ss_pred ---EEecCCCcEEEEEeCCC----cEEEEeCCC-CceEEEEeecCCCC-eeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 160 ---MDFSLDSEFLATTSTDG----SARIWKTED-GVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 160 ---~~~~~~~~~l~~~~~d~----~i~i~d~~~-~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
..|++++.+|++++.|+ +|+|||++. ++++..+..+.... +......+++.. +++|..|+.|++|+
T Consensus 217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l-----~lsGkGD~tIr~~e 291 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI-----YLIGKGDGNCRYYQ 291 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE-----EEEEECCCeEEEEE
Confidence 34568889999988764 799999995 55665554333222 222333344554 57888999999999
Q ss_pred ccCceEeeeee--ccCCCcEEEEEcCCC
Q 022184 231 ISTWNKIGHKR--LLRKPASVLSISLDG 256 (301)
Q Consensus 231 ~~~~~~~~~~~--~~~~~v~~~~~s~~~ 256 (301)
+..+... .+. .+..+..+++|.|..
T Consensus 292 ~~~~~~~-~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 292 HSLGSIR-KVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCcEE-eecccccCCCccceEEcccc
Confidence 9876432 222 134678889999963
No 97
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.3e-29 Score=206.31 Aligned_cols=229 Identities=17% Similarity=0.246 Sum_probs=206.1
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (301)
.+..|...|.++..-..++.+++|+.|..+-+|.+...... .....|..+|.++.|+++..+|++|+.+|+|+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-------~S~~~hespIeSl~f~~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-------TSLTGHESPIESLTFDTSERLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-------heeeccCCcceeeecCcchhhhcccccCCcee
Confidence 35578888999988778889999999999999998765542 22345889999999999999999999999999
Q ss_pred EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (301)
+||+...+.++.+.+|...+.++.|+|-+.+++.++.|..+++||.+...+...+..| ...+..+.|+|+|++ +
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~-----v 169 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRW-----V 169 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCce-----e
Confidence 9999999999999999999999999999999999999999999999988899998874 556999999999998 7
Q ss_pred EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (301)
Q Consensus 218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s 297 (301)
+.+++|..+++||+..++....+..|...+..+.|+|..-+++.|+.|+++++||+++.+.+.... .. ...|.+++|+
T Consensus 170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~-~~~v~~~~fn 247 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PE-TDGVRSLAFN 247 (825)
T ss_pred eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-Cc-cCCceeeeec
Confidence 899999999999999999999999999999999999999999999999999999999999888763 33 6789999999
Q ss_pred cCCC
Q 022184 298 PTQR 301 (301)
Q Consensus 298 pdg~ 301 (301)
|||+
T Consensus 248 ~~~~ 251 (825)
T KOG0267|consen 248 PDGK 251 (825)
T ss_pred CCce
Confidence 9985
No 98
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=183.00 Aligned_cols=272 Identities=17% Similarity=0.192 Sum_probs=213.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 82 (301)
.++|+|++|+|. ..++.+++ .++.++||.+|........ .+.-...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~---~plllvaG------~d~~lrifqvDGk~N~~lq------S~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPT---APLLLVAG------LDGTLRIFQVDGKVNPKLQ------SIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCC---CceEEEec------CCCcEEEEEecCccChhhe------eeeeccCccceeeecCCCceEEEecc
Confidence 478999999977 45666655 7888899999988765432 2223377899999999999 888999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
....++.||+.+.+...... ... .....+.....||++++|+..+..|.|.+....+++.+..+ .-.+.|..++|
T Consensus 278 rrky~ysyDle~ak~~k~~~---~~g-~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~f 352 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKP---PYG-VEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTF 352 (514)
T ss_pred cceEEEEeeccccccccccC---CCC-cccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEE
Confidence 99999999998776522111 000 01345677888999999999999999999999998887665 34578999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC------ceE
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WNK 236 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~------~~~ 236 (301)
+.|++.|+.++.+|.|.+||++...+++.+.....-.-+.++.++++.+ +++|+..|.|.|||.++ .++
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCCc
Confidence 9999999999999999999999999999987654434567788899997 79999999999999654 234
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEeeC--CCcEEEEeCCCceeeccccccc-cCccEEEEEEccCC
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPTQ 300 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg 300 (301)
+..+......|++++|+||++.||.++. +..+++-.+.+.....-++... .-+.|++++|||.|
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred hhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence 5555555678999999999999988874 5679999998877655443211 14579999999965
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=5.3e-28 Score=189.75 Aligned_cols=269 Identities=14% Similarity=0.121 Sum_probs=214.9
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+.-|.+++.+.. .+.+.+|+ .+.++||++...+... |............|.++...|||+.|++|+.
T Consensus 419 GEvVcAvtIS~~---trhVyTgG-------kgcVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGe 485 (705)
T KOG0639|consen 419 GEVVCAVTISNP---TRHVYTGG-------KGCVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE 485 (705)
T ss_pred CcEEEEEEecCC---cceeEecC-------CCeEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccc
Confidence 445555666644 56777755 3556999998765432 3322223334677999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
-.++.|||+.......+.. ..........++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||..+
T Consensus 486 astlsiWDLAapTprikae-----ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAE-----LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cceeeeeeccCCCcchhhh-----cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 9999999998765422211 11112456789999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL 243 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 243 (301)
+||..|-||+-|.+|+-||++++..+..... ...|.++.++|++.+ ++.+-.++.+.+......+. ..+..|
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF--~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~k-yqlhlh 632 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPEK-YQLHLH 632 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhh--hhhheecccCCCccc-----eeeecccCcEEEEecCCccc-eeeccc
Confidence 9999999999999999999999887665543 345999999999998 78888899998888765443 467778
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+..|.++.|.+.|+++++.+.|+.+..|...-|..+.... . .++|.+...|.|.|
T Consensus 633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E-~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--E-SSSVLSCDISFDDK 687 (705)
T ss_pred ccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--c-cCcceeeeeccCce
Confidence 8999999999999999999999999999999887776543 2 67899888887754
No 100
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-27 Score=184.38 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=185.7
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.++|.+++-+|+|.+|+.++..|.|++|.+.++.....+ ..|-..|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 678999999999999999989999999999999873332 2466889999999999999999999999999872
Q ss_pred ---------CcceecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 143 ---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+-++...+..|.-+|+++...+. ..+++|++.|.++++||+..+..+.++..+ ..+.+++.+|.+..
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp--~si~av~lDpae~~ 231 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP--SSIKAVALDPAERV 231 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC--CcceeEEEcccccE
Confidence 23445666677789999988764 358999999999999999999998888754 46999999999997
Q ss_pred ceEEEEEEeCCcceEEEEEccCce----------------EeeeeeccCC--CcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~----------------~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
++.|+.+|.|.+.++.+.. .+..+.+|.+ .|++++.+-||.+|++|+.||.|+|||+
T Consensus 232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 7889999999998875432 2445566766 9999999999999999999999999999
Q ss_pred CCceeeccccccccCccEEEEEEcc
Q 022184 274 KKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 274 ~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
.+.++++.+.. . .++|+.+.+.|
T Consensus 307 ~S~Q~iRtl~~-~-kgpVtnL~i~~ 329 (476)
T KOG0646|consen 307 YSKQCIRTLQT-S-KGPVTNLQINP 329 (476)
T ss_pred chHHHHHHHhh-h-ccccceeEeec
Confidence 99999988742 3 78899988844
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=177.72 Aligned_cols=251 Identities=12% Similarity=0.204 Sum_probs=200.7
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEE------cCCccc-------
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEV------YGGATD------- 98 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~------~~~~~~------- 98 (301)
+.|.+.+||.++... +...+.||.+.|++++|++.+.++++++.|++-.||.. ......
T Consensus 167 SADhTA~iWs~Esg~--------CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 167 SADHTARIWSLESGA--------CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ccccceeEEeecccc--------ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 467788999886543 24457899999999999999999999999999999982 221100
Q ss_pred --------------------cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE
Q 022184 99 --------------------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL 158 (301)
Q Consensus 99 --------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~ 158 (301)
..+-.+......|.+.|.+..|-..|+.+++++.|.+..+||+++++.+..+.+|..+.+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 000001112234667788889999999999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-
Q 022184 159 DMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK- 236 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~- 236 (301)
.++-+|..+++++.+.|.+.++||.+..- .+..+.+|.+ .|+++.|..+.+ ++++++|.+|++||+++.+.
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-tVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-TVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-ceeEEEEecCCc------eeecCCCceEEEeeeccccCc
Confidence 99999999999999999999999998543 3455666554 699999999988 69999999999999998764
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec---cccccccCccEEEEEEccC
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~---~~~~~~~~~~v~~~~~spd 299 (301)
+..+. ...+++.++.+..++.|+.--.+..|++||+....+.+ ....+| ..-|++.+|..+
T Consensus 392 lATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~ee 455 (481)
T KOG0300|consen 392 LATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEE 455 (481)
T ss_pred ceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeecccc
Confidence 34443 46788999999988899998888999999998765433 344678 888999999754
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.7e-28 Score=198.68 Aligned_cols=245 Identities=17% Similarity=0.187 Sum_probs=191.5
Q ss_pred EEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecCCcE
Q 022184 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGC 87 (301)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i 87 (301)
.+.|. .-+.+++|+.. ..+.|.+|++...... .....|..|+..++++.|++. ..+|++|++||.|
T Consensus 92 DVkW~--~~~~NlIAT~s------~nG~i~vWdlnk~~rn-----k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~v 158 (839)
T KOG0269|consen 92 DVKWG--QLYSNLIATCS------TNGVISVWDLNKSIRN-----KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTV 158 (839)
T ss_pred hcccc--cchhhhheeec------CCCcEEEEecCccccc-----hhhhHhhhhccceeeeeeccCCccEEEecCCCceE
Confidence 35677 34467777755 5566799998763211 113468899999999999985 4578899999999
Q ss_pred EEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCc-ceecccccCCccEEEEEecCC
Q 022184 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLD 165 (301)
Q Consensus 88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~ 165 (301)
++||++....... .......|+.++|+| .+..++++.+.|.+++||++.. +...++..|.++|.++.|+|+
T Consensus 159 K~~DlR~~~S~~t-------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 159 KCWDLRSKKSKST-------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred EEEeeeccccccc-------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC
Confidence 9999988765222 222457899999999 7889999999999999999865 455677889999999999999
Q ss_pred CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccC
Q 022184 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR 244 (301)
Q Consensus 166 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~ 244 (301)
+.+||||++|++|+|||+.+.+.......+...++.++.|-|...+.+. ..+-..|-.|+|||++..- +...+..|.
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLA--tcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLA--TCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhh--hhhccccceEEEEeeccccccceeeeccC
Confidence 9999999999999999998776655555566778999999999886321 2333467899999998654 346778889
Q ss_pred CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCC
Q 022184 245 KPASVLSISL-DGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 245 ~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~ 275 (301)
..++.++|.. |...+.+++.|+.|..-..++
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 9999999965 567888999999877655544
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=193.05 Aligned_cols=260 Identities=21% Similarity=0.245 Sum_probs=205.7
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
...+.++|.++ +.++.+.+ .++.+++|.-..... .|. .+.-+...|.+++.. +.+|++++.+
T Consensus 14 ~G~t~i~~d~~---gefi~tcg------sdg~ir~~~~~sd~e----~P~---ti~~~g~~v~~ia~~--s~~f~~~s~~ 75 (933)
T KOG1274|consen 14 GGLTLICYDPD---GEFICTCG------SDGDIRKWKTNSDEE----EPE---TIDISGELVSSIACY--SNHFLTGSEQ 75 (933)
T ss_pred CceEEEEEcCC---CCEEEEec------CCCceEEeecCCccc----CCc---hhhccCceeEEEeec--ccceEEeecc
Confidence 34677889987 44665544 777789987755421 111 122267778888764 5589999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (301)
++|.+|.+..++....+. .-.-++++++|+.+|++++.|++|-.|++.++.+......+.+|..+|.++.|+|
T Consensus 76 ~tv~~y~fps~~~~~iL~-------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILA-------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred ceEEEeeCCCCCccceee-------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 999999998877532221 1345789999999999999999999999999998888888999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 237 (301)
++++||+.+.||.|++||+.++.....+..-. ...+..++|+|++.. ++..+.|+.|++|+..+++..
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999988776664311 235678999999776 577788999999999999876
Q ss_pred eeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 238 GHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 238 ~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
..+.. +...+..++|+|+|+|||+++.||.|.|||.++-+. + .. ...|.+++|.|++
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EF-KRAVCCEAWKPNA 282 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cc-cceeEEEecCCCC
Confidence 55543 234489999999999999999999999999998221 1 12 5789999999986
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=184.12 Aligned_cols=261 Identities=14% Similarity=0.166 Sum_probs=209.4
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|.|++=+|. ..+.++.|+ .||.++||++.... ....+..|.+.|..++++. ..+++++.
T Consensus 66 rdGV~~lakhp~--~ls~~aSGs------~DG~VkiWnlsqR~--------~~~~f~AH~G~V~Gi~v~~--~~~~tvgd 127 (433)
T KOG0268|consen 66 RDGVSCLAKHPN--KLSTVASGS------CDGEVKIWNLSQRE--------CIRTFKAHEGLVRGICVTQ--TSFFTVGD 127 (433)
T ss_pred ccccchhhcCcc--hhhhhhccc------cCceEEEEehhhhh--------hhheeecccCceeeEEecc--cceEEecC
Confidence 356888887754 346677766 67788999986533 2456889999999999986 67889999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
|.+|+.|.++... ...+.....+..+.-+..++.++++++ .|.|||.....++..+.-..+.|.++.|+
T Consensus 128 DKtvK~wk~~~~p---------~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 128 DKTVKQWKIDGPP---------LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred CcceeeeeccCCc---------ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecC
Confidence 9999999988731 233334456667777777778888874 59999998888888888888899999999
Q ss_pred CCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eeeeee
Q 022184 164 LDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKR 241 (301)
Q Consensus 164 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~ 241 (301)
|... .|++++.|+.|.+||++++.++..+.... ..+.++|+|.+-. ++++.+|..++.||++..+ ++....
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhc
Confidence 9665 67778899999999999999988876443 4688999995544 5889999999999998754 456678
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.|...|.++.|||.|+-+++|+.|.+|+||.++.+.........- -..|.++.||.|.+
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSK 328 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEecccc
Confidence 888999999999999999999999999999999887665543333 56799999999875
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=199.44 Aligned_cols=274 Identities=13% Similarity=0.128 Sum_probs=200.6
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 82 (301)
..+..+++-+++ .+.+++++. ..+.+|.+.++.....-.... ..-+.-...+..+.|+. +.++||+++
T Consensus 39 k~~~nAIs~nr~---~~qiv~AGr-------s~lklyai~~~~~~~~~~~~~-k~kqn~~~S~~DVkW~~~~~NlIAT~s 107 (839)
T KOG0269|consen 39 KAKANAISVNRD---INQIVVAGR-------SLLKLYAINPNDFSEKCNHRF-KTKQNKFYSAADVKWGQLYSNLIATCS 107 (839)
T ss_pred ccccceEeecCC---cceeEEecc-------cceeeEeeCcccCCcceeeec-ccccceeeehhhcccccchhhhheeec
Confidence 344555666655 445555442 345788888876543211000 00111123467788875 567999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
..|.|.+||+........ ......|...+.++.|++ ...+|++|+.||.|++||++..+....+......|.++.
T Consensus 108 ~nG~i~vWdlnk~~rnk~----l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKL----LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred CCCcEEEEecCccccchh----hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 999999999976321111 112235888999999999 678899999999999999998888777777778999999
Q ss_pred ecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 162 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
|+| .+.+|+++.+.|.+++||+|...........|.++|.++.|+|++.+ +++|+.|++|+|||+.+.+.....
T Consensus 184 fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCcccee
Confidence 999 67789999999999999999865544333445678999999998887 899999999999999876543333
Q ss_pred ecc-CCCcEEEEEcCCCC-EEEEee--CCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 241 RLL-RKPASVLSISLDGK-YLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 241 ~~~-~~~v~~~~~s~~~~-~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
..+ ..++..+.|-|... .||+++ .|-.|+|||++-.-........| ...++.++|-.
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~ 319 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDS 319 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc-CccccceeccC
Confidence 332 46899999999765 456654 46789999998876666666778 88888898854
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-27 Score=169.16 Aligned_cols=232 Identities=13% Similarity=0.122 Sum_probs=181.1
Q ss_pred cCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecCCcEEEEEEcCCccccccccccCCC
Q 022184 31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP 108 (301)
Q Consensus 31 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 108 (301)
.++|+.++|+....+.. .....+|.||.++|..++|.. .|..||+++.||.|.||.-++++-. +....
T Consensus 29 csSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~-----k~~e~ 98 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT-----KAYEH 98 (299)
T ss_pred ecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh-----hhhhh
Confidence 35899999999988774 233567999999999999966 8999999999999999998877431 11233
Q ss_pred CCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCc-c--eecccccCCccEEEEEecCC---C-----------cEE
Q 022184 109 LQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-----------EFL 169 (301)
Q Consensus 109 ~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~-~--~~~~~~~~~~~i~~~~~~~~---~-----------~~l 169 (301)
..|...|++++|.|. |-.|+.++.||.|.|++.+.. . .......|.-.|++++|.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 347889999999994 667899999999999988654 1 22334567778999999984 4 569
Q ss_pred EEEeCCCcEEEEeCCCCceE--EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccC
Q 022184 170 ATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLR 244 (301)
Q Consensus 170 ~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~ 244 (301)
++|+.|..|+||+...++-. ..+..| ...|+.++|.|.-.. -..++++++.||++.||..+.... ...++...
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccccccccCC
Confidence 99999999999999876322 234444 557999999998654 234579999999999998763211 12234456
Q ss_pred CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 245 KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
..+..+.||+.|+.|++++.|+.|.+|.-.
T Consensus 257 ~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 789999999999999999999999999865
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-26 Score=168.70 Aligned_cols=228 Identities=15% Similarity=0.217 Sum_probs=182.5
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec--CCe
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH 135 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~ 135 (301)
.+..-.+.|+++.|+++|.++++++.|.+++|||..++.....+.. ++-.+..++|....+.++.++. |.+
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------kkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------KKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------ccccccEEEEecCCceEEEccCCCCCc
Confidence 3445578899999999999999999999999999998876333322 3346778888877777777765 889
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (301)
|+..++.+.+.++-+.+|...|.+++.+|-+..+++++.|++|++||+|..++...+.... -..++|.|.|-.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLi---- 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLI---- 154 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcE----
Confidence 9999999999999999999999999999998999999999999999999888877775432 346789999985
Q ss_pred EEEEeCCcceEEEEEccCce--Eeeeee---ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccccc--C
Q 022184 216 CTVQRGDKALLAVYDISTWN--KIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL--G 288 (301)
Q Consensus 216 ~~~~~~~~~~i~~~d~~~~~--~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~--~ 288 (301)
++.+.....|++||++... +...+. ......+.+.|||||++|+.++..+.+++.|.-+|.....+. .+. .
T Consensus 155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~ 232 (311)
T KOG1446|consen 155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAG 232 (311)
T ss_pred -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCC
Confidence 4555555599999998752 222332 234678899999999999999999999999999998777663 221 1
Q ss_pred ccEEEEEEccCCC
Q 022184 289 TSIALVEFCPTQR 301 (301)
Q Consensus 289 ~~v~~~~~spdg~ 301 (301)
..--+..|+|||+
T Consensus 233 ~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 233 NLPLSATFTPDSK 245 (311)
T ss_pred CcceeEEECCCCc
Confidence 1235788999986
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-26 Score=189.28 Aligned_cols=179 Identities=16% Similarity=0.125 Sum_probs=160.1
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc---ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 189 (301)
..+.+++.++-|++.+.|+..|.|-+|++.+|-....+ +.|.++|++++...-++.+++++.+|.+++||......+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 56788999999999999999999999999998876666 478889999999998999999999999999999998887
Q ss_pred EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (301)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 269 (301)
..+.... .+..+..+..... ++.+.+|-.|.++|..+.+.++.+.+|.+.|+.++|||||++|++++.|++|+
T Consensus 529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 7776544 4778888877775 57788899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 270 i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+||+.++.++..+.. ..++.++.|||+|.
T Consensus 602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD 630 (910)
T KOG1539|consen 602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGD 630 (910)
T ss_pred EEeccCcceeeeEec---CCcceeeEECCCCC
Confidence 999999999987632 68999999999984
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=7.3e-27 Score=194.74 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=197.6
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
..+.|.++++..- ..+++.|. .|.++++|+.... .....+.+|.+.|.++... ..++++|+
T Consensus 248 H~g~V~~l~~~~~---~~~lvsgS------~D~t~rvWd~~sg--------~C~~~l~gh~stv~~~~~~--~~~~~sgs 308 (537)
T KOG0274|consen 248 HFGGVWGLAFPSG---GDKLVSGS------TDKTERVWDCSTG--------ECTHSLQGHTSSVRCLTID--PFLLVSGS 308 (537)
T ss_pred CCCCceeEEEecC---CCEEEEEe------cCCcEEeEecCCC--------cEEEEecCCCceEEEEEcc--CceEeecc
Confidence 3567888888742 44777765 6778899996433 2356788999999999874 45788889
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
.|.+|++|+++++.. +..+. |.++|+++..+ +.++++|+.|++|++||..+++.+..+.+|...|.++.
T Consensus 309 ~D~tVkVW~v~n~~~--------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGAC--------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred CCceEEEEeccCcce--------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 999999999997765 33333 88999999997 78999999999999999999999999999999999998
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
+.+. ..+++|+.|++|++||+++. +++..+..|.. .+..+. ..++. +.+++.|+.|++||..+++++..+
T Consensus 379 ~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~-----Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 379 VDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNF-----LVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred ecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc-cccccc--cccce-----eEeccccccEEEeecccCceeeee
Confidence 8765 89999999999999999999 88888886654 354333 34444 789999999999999999999888
Q ss_pred ec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 241 RL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 241 ~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
.. +...++.+++. ...+++++.|+.+.+||+++++..+.+
T Consensus 450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 88 56788888776 467899999999999999999877754
No 110
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=182.49 Aligned_cols=263 Identities=14% Similarity=0.184 Sum_probs=208.3
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc-CCcceEEEECCCCCeEEEEec
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.+|+|+|++.+ .+.+|+|. .++.|+||....+ .....++.++ ...|.+++|++ +.+|.+.+.
T Consensus 26 s~I~slA~s~k---S~~lAvsR------t~g~IEiwN~~~~-------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYSHK---SNQLAVSR------TDGNIEIWNLSNN-------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGL 88 (691)
T ss_pred cceEEEEEecc---CCceeeec------cCCcEEEEccCCC-------ceeeEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence 57899999977 45677766 7788899988663 2234445555 56799999995 556888889
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccccCCccEEEEE
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDMD 161 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~i~~~~ 161 (301)
+|.|.-||+.+.+...... ...+.|.+++.+|.+..+++|++||.+..++...++... .+....+.+.+++
T Consensus 89 sg~i~EwDl~~lk~~~~~d-------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNID-------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred CceEEEEecccCceeEEec-------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 9999999999887633221 234789999999999999999999988888877766543 2344457999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
|+|++..+++|+.||.|++||...+..+..... ....-|+++.|-.++. ++++...|.|.+||...+
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIFG 235 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccCc
Confidence 999999999999999999999999887763321 1223478888888887 699999999999999999
Q ss_pred eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee---eccccccccCccEEEEEEcc
Q 022184 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~---~~~~~~~~~~~~v~~~~~sp 298 (301)
..+..+..|...|.+++.++++.++++++.|+.|.-|...+.+. .......| ...|.+++..+
T Consensus 236 TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~ 301 (691)
T KOG2048|consen 236 TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIE 301 (691)
T ss_pred chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeec
Confidence 99999999999999999999999999999999999998877643 22222456 66788777654
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-25 Score=157.20 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=190.9
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC----CCCeEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFV 79 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~ 79 (301)
.+.|+|.+|+|. +.++|+|. .|.++++..|+.++.... -...++.-|.+.|..++|-. .+..|+
T Consensus 89 kgsiyc~~ws~~---geliatgs------ndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 89 KGSIYCTAWSPC---GELIATGS------NDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred CccEEEEEecCc---cCeEEecC------CCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 578999999998 67999977 667779999987765542 23456778999999999954 344666
Q ss_pred EEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc--C---
Q 022184 80 CSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--A--- 153 (301)
Q Consensus 80 ~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~--- 153 (301)
+++. |..|++-|...++.. .....|.+.|.++ ++-++-++++|+.|.+|++||++-...+..+.. |
T Consensus 157 s~gagdc~iy~tdc~~g~~~-------~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGF-------HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred ecCCCcceEEEeecCCCCcc-------eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 6543 455666666555541 1222466667654 455788999999999999999987766554422 1
Q ss_pred --CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184 154 --HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (301)
Q Consensus 154 --~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 231 (301)
.+.|.+++..|.|++|++|-.|....+||++.+..++.+..|. ..|+++.|+|...+ +++++.|..|++-|+
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfsp~a~y-----llt~syd~~ikltdl 302 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFSPGAHY-----LLTCSYDMKIKLTDL 302 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeCCCceE-----EEEecccceEEEeec
Confidence 1469999999999999999999999999999999999998665 46999999999887 789999999999998
Q ss_pred cCc----eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 232 STW----NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 232 ~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
... -++.....|+..+-.+.|+|..-.+++.+.|.++.+|-+.
T Consensus 303 qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 303 QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 642 1233456678888889999999889999999999999764
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3e-27 Score=190.51 Aligned_cols=218 Identities=17% Similarity=0.209 Sum_probs=181.8
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCccccccccccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc--ceecc
Q 022184 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILD 149 (301)
Q Consensus 73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~--~~~~~ 149 (301)
|.+++|++|++||.|++|++.......... .... ..|...|+.+....+++.|++++.|-+|++|+...+ -+...
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhh
Confidence 467789999999999999997654321111 1122 236688999999999999999999999999998776 45566
Q ss_pred cccCCccEEEEEe-cCCCcEEEEEeCCCcEEEEeCCCCce--EEE--------EeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 150 EPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WTF--------LTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 150 ~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
+..|.+.|.|+++ .++...+|+|+-|+.|.+||+.++.. +.+ +...+...+++++.++.|.. ++
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~-----iv 187 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI-----IV 187 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE-----EE
Confidence 7788899999999 78888999999999999999997732 222 22134457999999999965 78
Q ss_pred EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
+|+.++.|++||.++.+.+..+.+|...|..+-.++||+.+++++.||+|++||+...+++..+ ..| ...|+++.-+|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWaL~~~~ 265 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWALQSSP 265 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEEEeeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999886 678 77799998876
Q ss_pred C
Q 022184 299 T 299 (301)
Q Consensus 299 d 299 (301)
+
T Consensus 266 s 266 (735)
T KOG0308|consen 266 S 266 (735)
T ss_pred C
Confidence 4
No 113
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-26 Score=180.20 Aligned_cols=266 Identities=17% Similarity=0.234 Sum_probs=205.6
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
++.+.|... +.++++.. +.|..+++|.-+.....+ |... ... .+.-.|++......++++++..+.
T Consensus 37 ~~s~~w~~~----n~lvvas~----~gdk~~~~~~K~g~~~~V---p~~~-k~~--gd~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 37 DFSFNWQRR----NFLVVASM----AGDKVMRIKEKDGKTPEV---PRVR-KLT--GDNAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred ceeeecccc----ceEEEeec----CCceeEEEecccCCCCcc---ceee-ccc--cchHHHHhhhhcceeeeccCcCce
Confidence 788899855 22433221 356667887766553222 2211 122 224455555555689999999999
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEEEEEecCC
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLD 165 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~~~~~~~~ 165 (301)
|+|||++.... ......|...|+++.++....+||+++..|.|.|..+.++.....+.... ..+.-+.|+|.
T Consensus 103 Vkiwdl~~kl~-------hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 103 VKIWDLRAKLI-------HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred eeehhhHHHHH-------hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 99999985443 12233577899999999999999999999999999998887765554443 35678999997
Q ss_pred Cc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184 166 SE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (301)
Q Consensus 166 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 244 (301)
.+ +|.+++.+|.|.+||+....++..+...|..+...++|+|....+ +++.+.|..|.+||.+..+....+ ...
T Consensus 176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l-~y~ 250 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRL-TYS 250 (673)
T ss_pred cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeeccccccccee-eec
Confidence 77 567788999999999999998888887788899999999998864 688899999999999976655444 346
Q ss_pred CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+.+.++|+++|.+|++|+..|.|..||++..+........| ...|++++|-|.
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s 304 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPS 304 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeec
Confidence 789999999999999999999999999999877665555788 888999999764
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-26 Score=182.03 Aligned_cols=229 Identities=14% Similarity=0.219 Sum_probs=189.1
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
-.|..-|.++.++...+++.+|+..+ |+|||+..... +.....+..+.....++++.+.|||+.|++|++-.++.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~--k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGN--KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCC--CCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 45788899999999999999987655 99999976532 2222234444456789999999999999999999999999
Q ss_pred eCCCcceecc--cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184 140 HWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (301)
Q Consensus 140 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (301)
|+.......+ +....-..+.++.+||.+..+++..||.|.|||+++...++.+++|.++ +.|+..++||.. +
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG-ascIdis~dGtk-----l 566 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISKDGTK-----L 566 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC-ceeEEecCCCce-----e
Confidence 9976554333 2222346788999999999999999999999999999999999988775 899999999998 8
Q ss_pred EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (301)
Q Consensus 218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s 297 (301)
.+++-|.+|+.||++++..+.... ....|.++..+|++.+|++|-.++.+.+......+.... ..| .+.|.++.|.
T Consensus 567 WTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa 642 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFA 642 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEec
Confidence 999999999999999987664332 346799999999999999999999999998876665544 557 8999999999
Q ss_pred cCCC
Q 022184 298 PTQR 301 (301)
Q Consensus 298 pdg~ 301 (301)
+-||
T Consensus 643 ~cGk 646 (705)
T KOG0639|consen 643 YCGK 646 (705)
T ss_pred ccCc
Confidence 9886
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-26 Score=165.58 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=181.5
Q ss_pred ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeE
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL 136 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i 136 (301)
-..|.+.|..+...-.|++||+++.|++|+|+.+++..... + ......|.++|..++|.. -|.+|++++.||.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~-l---l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK-L---LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce-e---eeEecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence 46799999999998899999999999999999998765411 1 123346889999999966 79999999999999
Q ss_pred EEEeCCCcce--ecccccCCccEEEEEecCC--CcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccC--
Q 022184 137 RIMHWPSLRI--ILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD-- 208 (301)
Q Consensus 137 ~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~-- 208 (301)
.||.-.+++- ......|...|++++|.|. |-.|++++.||.|.|.+.+.. -....+...|...+++++|.|.
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 9999877643 3345567789999999995 458999999999999998764 2223333344556999999986
Q ss_pred -CCc------ceEEEEEEeCCcceEEEEEccCce--EeeeeeccCCCcEEEEEcCCC----CEEEEeeCCCcEEEEeCCC
Q 022184 209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 209 -~~~------~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~i~~~~~ 275 (301)
|.. .-+.-+++++.|..|+||+..+++ ....+..|...|+.++|.|.- .+||+++.||++.||..+.
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 310 001126899999999999988753 334578899999999999963 5899999999999998763
Q ss_pred c--eeeccccccccCccEEEEEEccCCC
Q 022184 276 M--EINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 276 ~--~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
. +....+.... ...+..++||+.|.
T Consensus 243 e~e~wk~tll~~f-~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF-PDVVWRVSWSLSGN 269 (299)
T ss_pred ccCcccccccccC-CcceEEEEEecccc
Confidence 2 1112222223 67899999998874
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2e-24 Score=172.72 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=180.3
Q ss_pred eeEEEeeeecCCCccEE-EecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-ec
Q 022184 6 TVTCGSWIKRPENVNLV-VLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT 83 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~ 83 (301)
.+.+++|+|+ +..+ +++. .++.+.+|+.... .. ...+..+. .+..++|+|+++.++++ ..
T Consensus 32 ~~~~l~~~~d---g~~l~~~~~------~~~~v~~~d~~~~--~~------~~~~~~~~-~~~~~~~~~~g~~l~~~~~~ 93 (300)
T TIGR03866 32 RPRGITLSKD---GKLLYVCAS------DSDTIQVIDLATG--EV------IGTLPSGP-DPELFALHPNGKILYIANED 93 (300)
T ss_pred CCCceEECCC---CCEEEEEEC------CCCeEEEEECCCC--cE------EEeccCCC-CccEEEECCCCCEEEEEcCC
Confidence 3567889876 3333 4433 4566677766432 21 11222232 35678999999977655 56
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-eEEEEeCCCcceecccccCCccEEEEEe
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
++.+++||+.+.+.... +.....+.+++|+|++++++++..++ .+.+||.++++....... ...+..++|
T Consensus 94 ~~~l~~~d~~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 164 (300)
T TIGR03866 94 DNLVTVIDIETRKVLAE--------IPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF 164 (300)
T ss_pred CCeEEEEECCCCeEEeE--------eeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence 89999999987543211 11223467899999999999888765 567789887766544332 234578999
Q ss_pred cCCCcEEEEE-eCCCcEEEEeCCCCceEEEEeecC------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184 163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 163 ~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 235 (301)
+|++++|+++ ..++.|++||+++++.+..+..+. ......++|+|+++.++ ++.+.++.+.+||+++++
T Consensus 165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~----~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF----VALGPANRVAVVDAKTYE 240 (300)
T ss_pred CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE----EEcCCCCeEEEEECCCCc
Confidence 9999987554 468999999999988777664321 11235688999999732 333456689999999887
Q ss_pred EeeeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 236 KIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
.+.... +...+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+.. ....++++|+|
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~ 300 (300)
T TIGR03866 241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLPWGVVVRP 300 (300)
T ss_pred EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---ccccceeEeCC
Confidence 765443 34578999999999999886 4689999999999998887742 34568998886
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.8e-25 Score=172.37 Aligned_cols=273 Identities=18% Similarity=0.194 Sum_probs=197.7
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~ 82 (301)
.++|+|++|+|.. ..+++|+|.. .|.|-+|+++.+..... -...+..|..+|.++.|+| +...+++.+
T Consensus 186 ~~Rit~l~fHPt~-~~~lva~GdK------~G~VG~Wn~~~~~~d~d----~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 186 DRRITSLAFHPTE-NRKLVAVGDK------GGQVGLWNFGTQEKDKD----GVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ccceEEEEecccC-cceEEEEccC------CCcEEEEecCCCCCccC----ceEEeccCCccccceEecCCChhheeeec
Confidence 4789999999774 2478888774 45568999964332221 1345788999999999999 455899999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-ecccccCCccEEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD 161 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~ 161 (301)
.||+|++-|+++......+.. ......+..+.|+.+...++.+..=|...+||+++... ...+.-|...|.+++
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~-----~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSL-----DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred cCceeeeeeecchhhHHHhhc-----CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence 999999999987754222211 12335567888888877888888778999999988665 444556777999999
Q ss_pred ecCCC-cEEEEEeCCCcEEEEeCCCCceEEE---EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc----C
Q 022184 162 FSLDS-EFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T 233 (301)
Q Consensus 162 ~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~ 233 (301)
++|-. .+|+|++.|++.+|||+|.-..... ....|...|.+..|||++.. +++.+.|..|+|||.. .
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence 99954 5899999999999999986433221 22345567999999999987 7889999999999983 2
Q ss_pred ceEeeeeeccC----C--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE-EEEccC
Q 022184 234 WNKIGHKRLLR----K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPT 299 (301)
Q Consensus 234 ~~~~~~~~~~~----~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~spd 299 (301)
..+...+ .|+ . ......|.|+..++++|..-..|-|||-..++.+..+.... ...|.+ ..|+|-
T Consensus 405 ~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 405 DEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPM 475 (498)
T ss_pred CCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeeccc
Confidence 2222222 222 1 23346899999999999999999999999988666543322 323333 356653
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.1e-25 Score=165.81 Aligned_cols=212 Identities=16% Similarity=0.176 Sum_probs=172.4
Q ss_pred cccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCcc--cccccc------ccCCCCCCCCCeeEEEEee-CCCEEEE
Q 022184 60 DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT--DINLLA------KKMPPLQDAGPQKCLSFSV-DGSRFAA 129 (301)
Q Consensus 60 ~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~--~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~~ 129 (301)
..|.+.|+++...+ .|+++++|+.||.|.+||++.... ...+.. .......|.-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56889999999988 789999999999999999986542 111111 1122334667899999999 7778999
Q ss_pred eecCCeEEEEeCCCcceecccccCCccEEEEEecCC---CcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184 130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (301)
Q Consensus 130 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 206 (301)
++.|.+++|||.++.+....+ .-.+.|++-+|+|- ..++|+|..|-.|++-|+.+|...+.+.+|.+ .|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-GVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-ceEEEEec
Confidence 999999999999988876555 34568888889883 44788999999999999999999999998866 59999999
Q ss_pred cCCCcceEEEEEEeCCcceEEEEEccCc-eEe--------------eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 207 KDGTKPFLFCTVQRGDKALLAVYDISTW-NKI--------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
|...++ +++++.||.|++||++.. .+. +.-..|.+.+..++|+.++.++++.+.|.++++|
T Consensus 198 p~~e~v----LatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 198 PSSEWV----LATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred cCceeE----EEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 999873 799999999999999753 121 1233456789999999999999999999999999
Q ss_pred eCCCce
Q 022184 272 DVKKME 277 (301)
Q Consensus 272 ~~~~~~ 277 (301)
+..+|+
T Consensus 274 n~~~G~ 279 (397)
T KOG4283|consen 274 NMESGR 279 (397)
T ss_pred ecccCc
Confidence 998775
No 119
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.9e-24 Score=169.82 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=190.4
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
...|+|++|++..+...+.++-. +.+..+.+|+|...... ......++.|....|+|.+..++....
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~-----s~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~G 220 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDD-----SNPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCG 220 (626)
T ss_pred cccceeeeecccCCCceEEEecC-----CCccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeC
Confidence 35689999998866555666532 46677889999765421 123344778999999997776666667
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
.+.+.+|+.+++....+.-.- .......|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++..
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~f---ek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l 296 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIF---EKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML 296 (626)
T ss_pred CceEEEEEccCCceEEEeecc---ccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe
Confidence 788999999877653332111 111236799999999986 7899999999999998877777777888999999999
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc-----------eEEEEe----------------------------ecCCCCeeEEE
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGV-----------AWTFLT----------------------------RNSDEKIELCR 204 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~----------------------------~~~~~~v~~~~ 204 (301)
.+|.+|- |+.|..|..||-.-.+ .++.+. ..+......++
T Consensus 297 r~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla 375 (626)
T KOG2106|consen 297 RDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLA 375 (626)
T ss_pred cCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEE
Confidence 9987554 9999999999832110 000000 01111244455
Q ss_pred EccCCCcceEEEEEEeCCcceEEEEE--------------------------------------ccCceEeeeeeccCCC
Q 022184 205 FSKDGTKPFLFCTVQRGDKALLAVYD--------------------------------------ISTWNKIGHKRLLRKP 246 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~d--------------------------------------~~~~~~~~~~~~~~~~ 246 (301)
.+|+... +++++.|+.+++|+ .++...+. +...+.+
T Consensus 376 ~hps~~q-----~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-~~~d~~~ 449 (626)
T KOG2106|consen 376 THPSKNQ-----LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-IHTDNEQ 449 (626)
T ss_pred cCCChhh-----eeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEE-EEecCCc
Confidence 5555554 45666666666665 33322232 2333778
Q ss_pred cEEEEEcCCCCEEEEeeCCCcEEEEeCCCc-eeeccccccccCccEEEEEEccCCC
Q 022184 247 ASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
++.++|+|+|.+||.|+.|+.|+||.+... .........+ .++|+.+.||+|++
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQ 504 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCc
Confidence 999999999999999999999999999754 4444444455 78999999999985
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=173.54 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=190.6
Q ss_pred EEEeeeecC----CCccEEEecCCccccCCcCceeEeeeCCCcceeeeC-------------CceeccccccCCcceEEE
Q 022184 8 TCGSWIKRP----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-------------PLVTYVFDESEGDPMTIA 70 (301)
Q Consensus 8 ~~~~w~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~ 70 (301)
.|++|...+ +.++++|+|+ .+..|.||+++-....++.. ........+|++.|.+++
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGt------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGT------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEec------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 588897653 2368999988 66678999998655433210 011122457999999999
Q ss_pred ECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceec
Q 022184 71 VNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIIL 148 (301)
Q Consensus 71 ~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~ 148 (301)
|+..-+ .||+|+.|.+|++||+.+++....+ ..|...|.++.|+| ...+|++|+.|++|.+.|.+......
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCCCCcceeh-------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 988544 7889999999999999999873222 13678999999999 67889999999999999998533333
Q ss_pred ccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184 149 DEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (301)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (301)
......+.|..++|+|... .++++..||+++-+|+|.. +++.+++.|.. +|.++++++.-..+ +++++.++.|
T Consensus 324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~----l~t~s~d~~V 398 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGL----LSTASTDKVV 398 (463)
T ss_pred ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcc----eeeccccceE
Confidence 3334457899999999665 6777889999999999976 78888887654 79999999987763 6889999999
Q ss_pred EEEEccCceEeeeeecc---CCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeecc
Q 022184 227 AVYDISTWNKIGHKRLL---RKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 227 ~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
++|++....+. ....| -+...|.++.|+- -.++.|+..+.++|||+.+...++.
T Consensus 399 klw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 399 KLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 99998754431 11111 1335667777764 4677788888899999988776554
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-24 Score=160.16 Aligned_cols=228 Identities=12% Similarity=0.168 Sum_probs=180.2
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.+.|+++|+|.++ ..+++|+ .|+.++.++++.... ..+..|..+|.++.+++....+++|+
T Consensus 53 ~~~plL~c~F~d~----~~~~~G~------~dg~vr~~Dln~~~~---------~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 53 HGAPLLDCAFADE----STIVTGG------LDGQVRRYDLNTGNE---------DQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred cCCceeeeeccCC----ceEEEec------cCceEEEEEecCCcc---------eeeccCCCceEEEEeeccCCeEEEcc
Confidence 5789999999975 3566665 888889988876553 33678999999999999888999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccEEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDM 160 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i~~~ 160 (301)
.|++|++||...... ...+.....|.++.. .++.|++|+.+..+.+||+++.....+.... .-.+.++
T Consensus 114 WD~~ik~wD~R~~~~--------~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVV--------VGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV 183 (323)
T ss_pred cCccEEEEecccccc--------ccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE
Confidence 999999999986332 222223357777766 4778999999999999999987654432222 2378999
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEeecC--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (301)
++-|++.-++.++-||.|.+=.++.. +....++.|. -.+|++++|+|-... +++++.||.|.+
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-----faTgGsDG~V~~ 258 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-----FATGGSDGIVNI 258 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce-----EEecCCCceEEE
Confidence 99998888999999999887766654 3334444432 137899999998665 799999999999
Q ss_pred EEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC
Q 022184 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (301)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (301)
||+.+.+.+..+......|..++|+.+|..||+++.
T Consensus 259 Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 259 WDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999888888877788999999999999999974
No 122
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.9e-25 Score=180.39 Aligned_cols=280 Identities=13% Similarity=0.122 Sum_probs=206.7
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce-----------------------eeeCCceecccccc
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-----------------------VYTSPLVTYVFDES 62 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-----------------------~~~~~~~~~~~~~h 62 (301)
-|..++|.....+..++|.++ .|..|+||.+...+.. +.........+.||
T Consensus 193 WIrsl~f~~~~~~~~~laS~S------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSS------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred hhhhhhhhccCCCcEEEEecC------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 356677775544345666544 6778899998654410 00011122456799
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc---------------------------------------------
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------------------------------------------- 97 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~--------------------------------------------- 97 (301)
++.|.++.|+|.+..|++++.|.++.+|...+...
T Consensus 267 eDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred ccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 99999999999999999999999999999876532
Q ss_pred ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc--------------------------------
Q 022184 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-------------------------------- 145 (301)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-------------------------------- 145 (301)
...........-.|.+.|..++|+|.|.+|++.+.|.+-|+|-.-..+
T Consensus 347 d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgA 426 (764)
T KOG1063|consen 347 DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGA 426 (764)
T ss_pred CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecc
Confidence 001111222334577899999999999999999988877776421000
Q ss_pred --ee----------------------------------------------------------------------------
Q 022184 146 --II---------------------------------------------------------------------------- 147 (301)
Q Consensus 146 --~~---------------------------------------------------------------------------- 147 (301)
.+
T Consensus 427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E 506 (764)
T KOG1063|consen 427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE 506 (764)
T ss_pred cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence 00
Q ss_pred ------------cccccCCccEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184 148 ------------LDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 148 ------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
.++.+|.-.|++++.+|+++++|+++... .|++|+..+-.....+..|. -.|+.++|||||+
T Consensus 507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs-LTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS-LTVTRLAFSPDGR 585 (764)
T ss_pred HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc-eEEEEEEECCCCc
Confidence 13455667899999999999999998654 49999998888888787664 5699999999999
Q ss_pred cceEEEEEEeCCcceEEEEEccCceE----eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc--eeeccc-c
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWS-K 283 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~--~~~~~~-~ 283 (301)
+ +++.+.|+++.+|....... ....+.|..-|..+.|+|+++++++++.|.+|++|..... +.+..+ .
T Consensus 586 ~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~ 660 (764)
T KOG1063|consen 586 Y-----LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC 660 (764)
T ss_pred E-----EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence 8 79999999999998754322 2335678888999999999999999999999999999887 433331 1
Q ss_pred ccccCccEEEEEEcc
Q 022184 284 RLHLGTSIALVEFCP 298 (301)
Q Consensus 284 ~~~~~~~v~~~~~sp 298 (301)
..+ ..+|+.++|.|
T Consensus 661 ~~~-~~aVTAv~~~~ 674 (764)
T KOG1063|consen 661 LKF-SLAVTAVAYLP 674 (764)
T ss_pred hcc-CCceeeEEeec
Confidence 234 78899999876
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-24 Score=159.54 Aligned_cols=254 Identities=11% Similarity=0.141 Sum_probs=186.1
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEe
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST 82 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~ 82 (301)
.-|.|+.|... ++-+|++. +|.+++||+++.....+.. ....+.|.+.|..+.|.+ -|+.+|+++
T Consensus 14 DlihdVs~D~~---GRRmAtCS------sDq~vkI~d~~~~s~~W~~----Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFY---GRRMATCS------SDQTVKIWDSTSDSGTWSC----TSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeeccc---Cceeeecc------CCCcEEEEeccCCCCceEE----eeeEEecCCcEEEEEecCccccceEEEEe
Confidence 44899999866 55566544 7888999998776665533 445788999999999965 689999999
Q ss_pred cCCcEEEEEEcCC--ccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCc------ceecccc-
Q 022184 83 TNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP- 151 (301)
Q Consensus 83 ~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~- 151 (301)
.|+++.||.-... +.......+..........|+.+.|.| -|-.+++++.||.++||+.... .....+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 9999999987422 222222222223334557899999999 5778999999999999986432 2222222
Q ss_pred ------cCCccEEEEEecCC---CcEEEEEeCC-----CcEEEEeCCCCc----eEEEEeecCCCCeeEEEEccCCCcce
Q 022184 152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 152 ------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (301)
.+..+..|+.|+|. ..+||.|+.+ +.++||...... .+..+. .+..+|+.++|.|+-...|
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCce
Confidence 34457889999983 4578888765 478888765433 234455 4456899999999854422
Q ss_pred EEEEEEeCCcceEEEEEccCc--------------------eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 214 LFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 214 ~~~~~~~~~~~~i~~~d~~~~--------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
-.+++++.|| |+||.++.. +.+..+..|++.|..+.|+-.|..|++.+.||.|++|..
T Consensus 240 -~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 240 -HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred -eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 2368889999 999998731 224556788899999999999999999999999999987
Q ss_pred C
Q 022184 274 K 274 (301)
Q Consensus 274 ~ 274 (301)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 5
No 124
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.94 E-value=2.1e-24 Score=158.60 Aligned_cols=282 Identities=12% Similarity=0.159 Sum_probs=207.2
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-----eE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----DF 78 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l 78 (301)
--+++++.|+..+...-.+|+|.-.. ...|.++|..++.....+...+. -.|.-+++.+.|.|+.. +|
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~E--e~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIE--EYNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeecc--ccCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcchh
Confidence 35789999997766667888877433 25589999999877665533222 36889999999999763 45
Q ss_pred EEEecCCcEEEEEEcCCcccccccc--ccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcc---eeccccc
Q 022184 79 VCSTTNGGCKLFEVYGGATDINLLA--KKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPK 152 (301)
Q Consensus 79 ~~~~~d~~i~~w~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~ 152 (301)
|++ . ..+++|.+...+....... ......++..++++..|+. +.++|.+++-|-+..|||++++. ...++..
T Consensus 117 ATs-~-D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATS-S-DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hcc-c-CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 543 3 4499999975433222111 1112233567899999988 88899999999999999999863 3566788
Q ss_pred CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
|.++|..++|...+. .||+.+.||.+|+||+|..+....+.. +. ..+...++|++...+ +++ ..+-....|.+.
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpn-ymA--Tf~~dS~~V~iL 271 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPN-YMA--TFAMDSNKVVIL 271 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCch-HHh--hhhcCCceEEEE
Confidence 999999999998654 899999999999999998765554432 22 456888999988776 332 233445579999
Q ss_pred EccCc-eEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCcee-----eccccccccCccEEEEEEccC
Q 022184 230 DISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI-----NHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 230 d~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~spd 299 (301)
|++.. .++..+..|+..|+.++|.|. ...|++++.|..+.|||+..... .-.... . .+.|+.+.|+|.
T Consensus 272 DiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a-~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 272 DIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-A-GGEVNQIQWSSS 346 (364)
T ss_pred EecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-c-cceeeeeeeccc
Confidence 99864 467788999999999999996 57899999999999999975322 111112 2 578999999964
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.3e-23 Score=168.09 Aligned_cols=242 Identities=16% Similarity=0.228 Sum_probs=172.1
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEEecCCcEEEEEEcCCccccccccccCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 111 (301)
.++.+.+|+.+... . ...+..+ ..+.+++|+|+++.+ ++++.++.|++||..+++....+ ..
T Consensus 9 ~d~~v~~~d~~t~~--~------~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--------~~ 71 (300)
T TIGR03866 9 KDNTISVIDTATLE--V------TRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--------PS 71 (300)
T ss_pred CCCEEEEEECCCCc--e------EEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--------cC
Confidence 56677888764322 1 1223333 346789999999976 56677899999999876542211 11
Q ss_pred CCCeeEEEEeeCCCEEEEe-ecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC-cEEEEeCCCCceE
Q 022184 112 AGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAW 189 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~ 189 (301)
...+..++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++..
T Consensus 72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 2335678999999877655 5689999999988776655532 33568899999999999888765 5678899888776
Q ss_pred EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-------CCcEEEEEcCCCCEEEEe
Q 022184 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG 262 (301)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~ 262 (301)
...... ..+..++|+|+++.+ ++++..++.|.+||+++++.+..+..+. .....++|+|++++++++
T Consensus 151 ~~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 151 DNVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 655432 246789999999972 2445568999999999987765543221 123468899999986554
Q ss_pred -eCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 263 -SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 263 -~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+.++.+.+||+++++...... + ...+.+++|+|+|+
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~--~-~~~~~~~~~~~~g~ 261 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLL--V-GQRVWQLAFTPDEK 261 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEE--e-CCCcceEEECCCCC
Confidence 456789999999888776542 3 45789999999985
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.9e-24 Score=157.63 Aligned_cols=272 Identities=16% Similarity=0.205 Sum_probs=195.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcce----eeeCC---ceeccccccCCcceEEEECC-CC
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS----VYTSP---LVTYVFDESEGDPMTIAVNP-SG 75 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~---~~~~~~~~h~~~v~~~~~~~-~~ 75 (301)
++.|.+++.-+. .+++++.|+ .|+.+.+|++...... +.... .....-.+|.-.|.++.|-| |.
T Consensus 43 gGsvNsL~id~t--egrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 43 GGSVNSLQIDLT--EGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred CCccceeeeccc--cceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 566776666533 367887776 6777899998654421 11111 12233467888999999999 55
Q ss_pred CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee---CCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (301)
Q Consensus 76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 152 (301)
-.+.+++.|.++++||..+.+... .+.-++.|+.-++|| ...++|+|..+-.|++.|+.+|.....+.+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~--------~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG 186 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV--------DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG 186 (397)
T ss_pred ceeecccccceEEEeecccceeeE--------EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence 688899999999999998876532 233457788888988 245788889999999999999999999999
Q ss_pred CCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCC-ceEEEEee-------------cCCCCeeEEEEccCCCcceEEEE
Q 022184 153 AHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDG-VAWTFLTR-------------NSDEKIELCRFSKDGTKPFLFCT 217 (301)
Q Consensus 153 ~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~ 217 (301)
|.+.|.++.|+|..+ .|++|+.||.|++||++.. .+...+.. .+.+.+..++|+.++.+ +
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-----l 261 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-----L 261 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----h
Confidence 999999999999877 5789999999999999864 33333322 23456899999999998 6
Q ss_pred EEeCCcceEEEEEccCceEeeee---eccCC---CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccE
Q 022184 218 VQRGDKALLAVYDISTWNKIGHK---RLLRK---PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291 (301)
Q Consensus 218 ~~~~~~~~i~~~d~~~~~~~~~~---~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v 291 (301)
++.+.|..+++|+..+++..... ..++. .-..+. +.+...++---.++.+.++++-+++.++.+ ..| ...|
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k~i 338 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LKRI 338 (397)
T ss_pred hhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-ccee
Confidence 88899999999999887642111 01111 111122 333333444445578888888888888776 567 6777
Q ss_pred EEEEEccC
Q 022184 292 ALVEFCPT 299 (301)
Q Consensus 292 ~~~~~spd 299 (301)
.+.++.||
T Consensus 339 ~c~~~~~~ 346 (397)
T KOG4283|consen 339 NCAAYRPD 346 (397)
T ss_pred eEEeecCc
Confidence 77777765
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=176.92 Aligned_cols=257 Identities=16% Similarity=0.188 Sum_probs=189.5
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-----------CCeEEEEecCCcEEEEEEcCCcccc--
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GDDFVCSTTNGGCKLFEVYGGATDI-- 99 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~d~~i~~w~~~~~~~~~-- 99 (301)
.|..+.+|++....+ +-....+-.|...|..+.--|. ...+++++.|++|++|+++......
T Consensus 344 ndhSlYvWDvrD~~k-----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy 418 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNK-----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY 418 (1080)
T ss_pred cCceEEEEecccccc-----ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee
Confidence 455667777654321 1112234456777766665441 1258899999999999998632100
Q ss_pred --ccccc--------------------------cCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184 100 --NLLAK--------------------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (301)
Q Consensus 100 --~~~~~--------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 151 (301)
++... ........-.+++++.||+|++|++|..-|+++||++...+....+.
T Consensus 419 rRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e 498 (1080)
T KOG1408|consen 419 RRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME 498 (1080)
T ss_pred ecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee
Confidence 00000 00111223468999999999999999999999999999988888899
Q ss_pred cCCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCC------------------------------
Q 022184 152 KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSD------------------------------ 197 (301)
Q Consensus 152 ~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~------------------------------ 197 (301)
.|..+|.|+.|+. ..++||+++.|.-|++||....-. +.++..|..
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 9999999999985 356899999999999999864321 222222111
Q ss_pred ------------------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc---CCCcEEEEEcCCC
Q 022184 198 ------------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDG 256 (301)
Q Consensus 198 ------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~v~~~~~s~~~ 256 (301)
..++.++..|..++ +++++.|..|+|||+.+++..+.+++. ++..-.+...|.|
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG 653 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc
Confidence 12445555555554 688999999999999999998888764 4567788999999
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 257 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.||++.+.|.++.++|..+++++... .+| ...|+.+.|++|-|
T Consensus 654 iY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCK 696 (1080)
T ss_pred cEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccch
Confidence 99999999999999999999999988 689 99999999999864
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-26 Score=189.23 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=182.6
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
.+..+.+|.... +.....+.+|..+|.++.|+++..+|++|+.+|+|++||++...... ....|.
T Consensus 48 ~~~k~~L~~i~k--------p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-------tLtgh~ 112 (825)
T KOG0267|consen 48 EDEKVNLWAIGK--------PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-------TLTGHL 112 (825)
T ss_pred CceeeccccccC--------CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh-------hhhccc
Confidence 444556665542 23344588999999999999999999999999999999999776522 233467
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 192 (301)
..+..+.|+|-+.+.+.|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.|..+++||+..|+....+
T Consensus 113 ~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 113 LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred cCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 88899999999999999999999999999977777888788788999999999999999999999999999999999999
Q ss_pred eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC
Q 022184 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (301)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 266 (301)
..|. ..+..+.|+|..-. +..++.|+++++||+++.+.+.........|.+..|+|+++.+++|....
T Consensus 193 ~~~e-~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 193 KSHE-GKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccc-ccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8664 46899999998765 79999999999999999998888777788999999999999999887653
No 129
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3.2e-25 Score=168.19 Aligned_cols=218 Identities=16% Similarity=0.229 Sum_probs=165.0
Q ss_pred CCceeccccccCCcceEEEECCCCC--eEEEEecCCcEEEEEEcCCcccc---------ccccccCCCCCCCCCeeEEEE
Q 022184 52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDI---------NLLAKKMPPLQDAGPQKCLSF 120 (301)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~ 120 (301)
.|........|.+.++.+.-++-++ +.++=+..|.|+||++...-... ...........|...-+.++|
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence 3555566678899999999888765 44444567999999986432210 111111222335567789999
Q ss_pred ee-CCCEEEEeecCCeEEEEeCCCccee---cccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCce-EEEEee
Q 022184 121 SV-DGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA-WTFLTR 194 (301)
Q Consensus 121 s~-~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~~~~~ 194 (301)
|| .-..|++|..-+.|++|...++.-. ..+.+|...|..++|+|.. ..|++|+.|++|+|||+|.+.. ...+..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence 99 3335888888899999998876542 2355688899999999954 4899999999999999998832 222334
Q ss_pred cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC---ceEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEE
Q 022184 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV 270 (301)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i 270 (301)
.+...|+.+.|+.+-.. +++|++||+++|||+++ ++++..++.|+.+|+++.|+|. ...|++++.|..|.|
T Consensus 300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 45557999999988775 79999999999999986 4567889999999999999995 467888899999999
Q ss_pred EeCC
Q 022184 271 VDVK 274 (301)
Q Consensus 271 ~~~~ 274 (301)
||+.
T Consensus 375 WDls 378 (440)
T KOG0302|consen 375 WDLS 378 (440)
T ss_pred EEee
Confidence 9986
No 130
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=171.83 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=193.0
Q ss_pred ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccc---------cCCC--CCCCCCeeEEEEeeCCC
Q 022184 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS 125 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~s~~~~ 125 (301)
..+..|.-+|.+++++|++++.++++.+++|.-|++.++.....+... .... ..|...+.+++.|+||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 456789999999999999999999999999999999887743111111 1111 25667899999999999
Q ss_pred EEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (301)
Q Consensus 126 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 205 (301)
+|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+.+++|++.....+.++.+|++ .|..+.-
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida 294 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA 294 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence 999999999999999999999999999999999999998778899999999999999999888888888876 4888888
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 285 (301)
...++. +..++.|+++++|++..... ..+.++.+.+.+++|-. ...+++|+.+|.|.+|++...+++.....+
T Consensus 295 L~reR~-----vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 295 LSRERC-----VTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred hcccce-----EEeccccceeEEEeccccce-eeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecc
Confidence 777775 56777999999999954333 35677788999999964 457999999999999999998888776555
Q ss_pred cc----------CccEEEEEEccC
Q 022184 286 HL----------GTSIALVEFCPT 299 (301)
Q Consensus 286 ~~----------~~~v~~~~~spd 299 (301)
|. ...|++++..|.
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred ccccCCccccccccceeeeEeccc
Confidence 51 115677776553
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8e-26 Score=193.08 Aligned_cols=278 Identities=18% Similarity=0.246 Sum_probs=206.4
Q ss_pred EEeeeecCCCccEEEecCCcccc----CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCe----EEE
Q 022184 9 CGSWIKRPENVNLVVLGKSSRAS----SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD----FVC 80 (301)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~~ 80 (301)
-.+|+|+. ..++|.|+..+.. +...++.||.++.........+... + .-..+.+.++|.+.|.. ||.
T Consensus 11 ~~awSp~~--~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s--~-~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 11 TFAWSPAS--PPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGS--L-QSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred eEEecCCC--chhhHHHhhhhccccccccccccceeeecccCcccccccccc--c-cccccceeeeecccCCCccceeec
Confidence 46899774 5577877764432 4578889998876654321111111 1 12556889999998776 788
Q ss_pred EecCCcEEEEEEcCC--ccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccc--cCCc
Q 022184 81 STTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHK 155 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~ 155 (301)
|..||.|.+||...- ....... .....|++.|..+.|++ .+++||+|+.||.|.|||++..+...... ...+
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPS 162 (1049)
T ss_pred cccCCceEEecchhhccCcchHHH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence 889999999998763 1111111 22335889999999999 55699999999999999998765544432 2336
Q ss_pred cEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCC--cceEEEEEc
Q 022184 156 SVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI 231 (301)
Q Consensus 156 ~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~ 231 (301)
.|.+++|+..- ..|++++.+|++.|||+|..+.+..+..+.. ..+..++|+|+..... +++..+ .-.|.+||+
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql---~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQL---LVASGDDSAPVIQLWDL 239 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceee---eeecCCCCCceeEeecc
Confidence 89999999854 4788899999999999999988777765443 3478999999987632 222222 357999998
Q ss_pred cCce-EeeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 232 STWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 232 ~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
|.-. +++.+..|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+.. . ...+..+.|+|.
T Consensus 240 R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 240 RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPR 307 (1049)
T ss_pred cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCC
Confidence 8643 556778999999999999965 8999999999999999999999998854 4 678999999884
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.3e-24 Score=160.20 Aligned_cols=260 Identities=13% Similarity=0.193 Sum_probs=190.4
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
-.||.|++- +.++|+|- .+|.+.||+++... ....+.+|..+|.+++||++|+.|++++.|..
T Consensus 26 a~~~~Fs~~---G~~lAvGc------~nG~vvI~D~~T~~--------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRW---GDYLAVGC------ANGRVVIYDFDTFR--------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccC---cceeeeec------cCCcEEEEEccccc--------hhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 679999987 78999987 55666899987654 24568899999999999999999999999999
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCC-c----cEEEE
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K----SVLDM 160 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~----~i~~~ 160 (301)
|.+||+..+.. ...+.-..+|..+.|+| +.+..++.-.+..-.+.++...+.. .+.... + ...+.
T Consensus 89 i~lwDl~~gs~--------l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 89 IKLWDLLKGSP--------LKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHG 159 (405)
T ss_pred eEEEeccCCCc--------eeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccc
Confidence 99999998875 33334568899999999 3344444433444555555442221 111111 1 12334
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc------
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------ 234 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------ 234 (301)
.|.+.|+++++|...|.+.++|..+.+++..+.......|..+.++..|+. ++..+.|..|+.|+++.-
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCcc
Confidence 688999999999999999999999999999888766456999999999997 788899999999998621
Q ss_pred -eEe--eeeec--cCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 235 -NKI--GHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 235 -~~~--~~~~~--~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
++. ..+.. .+-.-.+++||.+|.|+++++. ...++||.-..|.+++.+.... ....-.+.|+|
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp 303 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHP 303 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeeccccc
Confidence 111 11110 1123456899999999998874 3579999999999988774322 35566677766
No 133
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.94 E-value=2.2e-24 Score=164.63 Aligned_cols=216 Identities=12% Similarity=0.114 Sum_probs=175.4
Q ss_pred cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCe
Q 022184 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH 135 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~ 135 (301)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+.....+.........|...|--++|+| -.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4689999999999999 5568889999999999999887665555444444556888999999999 4578899999999
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (301)
|.+||+.+++.+..+. |.+.|+++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+.....+.|-.+|. ++.
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~--i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK--IFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--eee
Confidence 9999999999887775 8899999999999999999999999999999999999888777777778888999998 333
Q ss_pred EEEEeCCcceEEEEEccCceEe---eeeeccCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCce
Q 022184 216 CTVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME 277 (301)
Q Consensus 216 ~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~ 277 (301)
..++...+.++.+||..+.+.. ..+.. ...|.-.-|+||.+.++.+ -.|+.|+.|++....
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3455567899999998765432 22222 3456666678888877655 468999999997654
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=166.76 Aligned_cols=241 Identities=14% Similarity=0.168 Sum_probs=181.0
Q ss_pred ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc----CCcceEEEECC-------CCCeEEEEecCCcE
Q 022184 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES----EGDPMTIAVNP-------SGDDFVCSTTNGGC 87 (301)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~-------~~~~l~~~~~d~~i 87 (301)
.++++++.... ....+.+|.|+.....+ +..| .....|++|.. .|+++|.|+.|..|
T Consensus 137 DnlIl~ar~ed---dvs~LEvYVyn~~e~nl---------YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 137 DNLILCARNED---DVSYLEVYVYNEEEENL---------YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred CcEEEEeeccC---CceEEEEEEEcCCCcce---------eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 35666655322 34678899998776433 1122 23456777743 36799999999999
Q ss_pred EEEEEcCCcccc--cccc------------ccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184 88 KLFEVYGGATDI--NLLA------------KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (301)
Q Consensus 88 ~~w~~~~~~~~~--~~~~------------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 152 (301)
.|||+.-..... ..+. +......|...|..++|+.. .+.||+|+.|.+|++||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 999986432210 0000 11112246677888999884 56789999999999999999999888887
Q ss_pred CCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 153 ~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
|.++|.++.|+| ....|++|+.|++|.+.|+|..... ..++ ..+.|..++|.|..... ++.+..||.|+-+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFD 358 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeee
Confidence 888999999999 4568999999999999999953322 2222 23459999999998864 46678999999999
Q ss_pred ccCc-eEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCCCce
Q 022184 231 ISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 231 ~~~~-~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
+|+. +++.+++.|..+|+++++++. ..++++++.|+.|++|++....
T Consensus 359 ~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred cCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 9976 788899999999999999885 4678999999999999997543
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=158.03 Aligned_cols=229 Identities=12% Similarity=0.094 Sum_probs=178.9
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC--eEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFV 79 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~ 79 (301)
+..+||+|++|+.| +..+++|+ .|+.+++|++..+. ...+..|.++|.++.|-+... .|+
T Consensus 70 ~~~~PvL~v~Wsdd---gskVf~g~------~Dk~~k~wDL~S~Q---------~~~v~~Hd~pvkt~~wv~~~~~~cl~ 131 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDD---GSKVFSGG------CDKQAKLWDLASGQ---------VSQVAAHDAPVKTCHWVPGMNYQCLV 131 (347)
T ss_pred ccCCCeEEEEEccC---CceEEeec------cCCceEEEEccCCC---------eeeeeecccceeEEEEecCCCcceeE
Confidence 45789999999988 56777766 77788999997764 234678999999999987555 899
Q ss_pred EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC--CccE
Q 022184 80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSV 157 (301)
Q Consensus 80 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~i 157 (301)
+|+.|++|+.||.+.... ...+.-.+.++++.. ...+++++..+..|.+|+++++....+.... .-.+
T Consensus 132 TGSWDKTlKfWD~R~~~p--------v~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~ 201 (347)
T KOG0647|consen 132 TGSWDKTLKFWDTRSSNP--------VATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT 201 (347)
T ss_pred ecccccceeecccCCCCe--------eeeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence 999999999999986654 222333456666654 3457888888999999999776544332221 2368
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCC--ceEEEEeecCC--------CCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 158 LDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
++++..+|....+.|+-.|.+.+..+..+ +.-..++.|.. ..|.+++|+|.... +++.+.||++.
T Consensus 202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt-----lvTaGsDGtf~ 276 (347)
T KOG0647|consen 202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT-----LVTAGSDGTFS 276 (347)
T ss_pred eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----EEEecCCceEE
Confidence 99999998888899999999999998876 33344444431 25788999998776 79999999999
Q ss_pred EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
+||-.....+.....+..+|++.+|+.+|.++|.+.
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999988878878888999999999999999988763
No 136
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=169.43 Aligned_cols=226 Identities=13% Similarity=0.186 Sum_probs=185.7
Q ss_pred eccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 56 TYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
...+.+|.+.|.+++=+|.. ..+++|+.||.|++||+....+... ...|.+.|..+++.. ..+++++.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------FKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------eecccCceeeEEecc--cceEEecCCc
Confidence 34579999999999999977 6899999999999999998776332 234778999999976 6788999999
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+|+.|.+.. .++..+ .....+..+.-+..+..++|++. .|.|||.+-..++..+....+ .+.++.|+|....+
T Consensus 130 tvK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI-- 202 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI-- 202 (433)
T ss_pred ceeeeeccC-Ccceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh--
Confidence 999999765 333333 33456777777777778888874 699999998899999987765 49999999998874
Q ss_pred EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEE
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV 294 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~ 294 (301)
+++++.|+.|.+||+++..++..... ...-+.++|+|++-.+.+|++|..++.||++..+........| .+.|.++
T Consensus 203 --Las~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dV 278 (433)
T KOG0268|consen 203 --LASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDV 278 (433)
T ss_pred --eeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEe
Confidence 67778999999999999988765543 4456789999988889999999999999999887666566889 8999999
Q ss_pred EEccCCC
Q 022184 295 EFCPTQR 301 (301)
Q Consensus 295 ~~spdg~ 301 (301)
+|||.|+
T Consensus 279 dfsptG~ 285 (433)
T KOG0268|consen 279 DFSPTGQ 285 (433)
T ss_pred ccCCCcc
Confidence 9999985
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=6.6e-24 Score=161.13 Aligned_cols=228 Identities=15% Similarity=0.236 Sum_probs=168.2
Q ss_pred cCceeEeeeCCCcceee--------eCCceeccccccCCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccc
Q 022184 34 PSVLEIFSFDPKTTSVY--------TSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAK 104 (301)
Q Consensus 34 ~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 104 (301)
.+.++||.+.+.-..+. ......+++.+|.+.=+.++|||-.. .|++|..-+.|++|...++.-...
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd---- 249 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD---- 249 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----
Confidence 34567777654322111 12234567889999999999999332 588888788899999988653222
Q ss_pred cCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEE
Q 022184 105 KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181 (301)
Q Consensus 105 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 181 (301)
..+...|...|-.++||| ....|++|+.||+|+|||++.+.. ......|.+.|..|.|+.+..+||+|+.||+++||
T Consensus 250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iw 329 (440)
T KOG0302|consen 250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIW 329 (440)
T ss_pred CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEE
Confidence 234455889999999999 566899999999999999998732 23346788899999999988899999999999999
Q ss_pred eCCC---CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----------------eeeeec
Q 022184 182 KTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKRL 242 (301)
Q Consensus 182 d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------------~~~~~~ 242 (301)
|+|+ ++++..++.| ..+|+++.|+|..... +++++.|.+|.+||+....- .+.+..
T Consensus 330 DLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 330 DLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred EhhhccCCCcceeEEec-cCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 9985 5667788765 5689999999987753 68889999999999853211 112223
Q ss_pred c--CCCcEEEEEcCCC-CEEEEeeCCCcEEEE
Q 022184 243 L--RKPASVLSISLDG-KYLAMGSKDGDICVV 271 (301)
Q Consensus 243 ~--~~~v~~~~~s~~~-~~l~~~~~d~~i~i~ 271 (301)
| ...+-.+.|+++- -++++.+.|| +.||
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 3 3457778999863 4777777887 4444
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.3e-24 Score=164.77 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=180.7
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-EEEEeecCCeEEEEeC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW 141 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~v~d~ 141 (301)
.+.|+++.|+|..+.|++++.|+++++|.++..... .+....+ ...+|.+..|.|+|. .+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence 567999999999999999999999999999865432 2111111 246899999999998 8999999999999999
Q ss_pred CCcceecc--cccCC-ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 142 PSLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 142 ~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
.+.+.... ..++. ..+.....+|++++|+..+..|.|.+....+++.+..++.. +.+..+.|+.+++. ++
T Consensus 288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~-----l~ 360 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSKE-----LL 360 (514)
T ss_pred cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCcE-----EE
Confidence 88765322 22222 35778889999999999999999999999999999998854 46999999999987 67
Q ss_pred EeCCcceEEEEEccCceEeeeeeccCC-CcEEEEEcCCCCEEEEeeCCCcEEEEeCCC------ceeeccccccccCccE
Q 022184 219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI 291 (301)
Q Consensus 219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~------~~~~~~~~~~~~~~~v 291 (301)
..+.+|.|.+||+++..++..+..... .-++++.|+++.|||+|+..|.|.|||.++ .+++..+... ...|
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL--tt~I 438 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL--TTAI 438 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh--heee
Confidence 788899999999999888776654332 346788889999999999999999999764 2444444222 5789
Q ss_pred EEEEEccCCC
Q 022184 292 ALVEFCPTQR 301 (301)
Q Consensus 292 ~~~~~spdg~ 301 (301)
++++|+||++
T Consensus 439 tsl~Fn~d~q 448 (514)
T KOG2055|consen 439 TSLQFNHDAQ 448 (514)
T ss_pred eeeeeCcchh
Confidence 9999999974
No 139
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=172.87 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=193.9
Q ss_pred EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcE
Q 022184 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC 87 (301)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 87 (301)
+++.|++.+....+++++. .++.+.+++.......+ +.........|...|..+.|-|....|++++.|.++
T Consensus 53 f~~sFs~~~n~eHiLavad------E~G~i~l~dt~~~~fr~--ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVAD------EDGGIILFDTKSIVFRL--EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred ccccccCCCCccceEEEec------CCCceeeecchhhhcch--hhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 5588888887778888876 45555666544332221 111123457899999999999966689999999999
Q ss_pred EEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcce--------------------
Q 022184 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI-------------------- 146 (301)
Q Consensus 88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~-------------------- 146 (301)
++||++..+.... ...+.|.+.+.+++|.| |...|++|+.||.|.|||++-...
T Consensus 125 r~Wdvk~s~l~G~-----~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 125 RPWDVKTSRLVGG-----RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred eeeeeccceeecc-----eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 9999998876322 12456889999999999 566789999999999999853220
Q ss_pred -------ecccccCCccEEE---EEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEe--------ec--CCCCeeEEEE
Q 022184 147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLT--------RN--SDEKIELCRF 205 (301)
Q Consensus 147 -------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~--------~~--~~~~v~~~~~ 205 (301)
+.....+...|.+ +.+..|...||+++. |+.|++||++......... .+ ....+.++..
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 0011122233444 555568888998887 9999999999765433221 11 1123667777
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceE--eeeeeccCCC--cEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
...|.+ +++.+.|+.|++||+.+... +..+.++... -..-..+||+.+|++|+.|...++|.+.+.+..-.
T Consensus 280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence 777887 56677799999999986432 2223222211 11224689999999999999999999999887777
Q ss_pred ccccccCccEEEEEEccC
Q 022184 282 SKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 282 ~~~~~~~~~v~~~~~spd 299 (301)
+..+| ...|++++|.|.
T Consensus 355 ~l~Gh-t~eVt~V~w~pS 371 (720)
T KOG0321|consen 355 LLLGH-TREVTTVRWLPS 371 (720)
T ss_pred hhhCc-ceEEEEEeeccc
Confidence 77899 999999999874
No 140
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=175.11 Aligned_cols=245 Identities=12% Similarity=0.123 Sum_probs=197.5
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC---CCCeE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDF 78 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l 78 (301)
++...+.|++.+|+ +.++|.|.. .|.+++|++..-. ....++.|+..|.|+.|+. ..++|
T Consensus 457 d~r~G~R~~~vSp~---gqhLAsGDr------~GnlrVy~Lq~l~--------~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPD---GQHLASGDR------GGNLRVYDLQELE--------YTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred CcccceEEEEECCC---cceecccCc------cCceEEEEehhhh--------hhhheecccceeEEEeecCchhhhHhh
Confidence 34577999999988 789999884 4556888875432 1345689999999999986 45689
Q ss_pred EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEEeecCCeEEEEeCCC-cceeccccc---
Q 022184 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPS-LRIILDEPK--- 152 (301)
Q Consensus 79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~d~~~-~~~~~~~~~--- 152 (301)
|++++|.-|.+||+...-... .....|...|+++.|..+| ..+++++.|..|.+ +... ......+..
T Consensus 520 ASasrdRlIHV~Dv~rny~l~------qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYDLV------QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhccCCceEEEEecccccchh------hhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceecccccc
Confidence 999999999999997553311 2223478899999999876 67888998987764 3322 111111222
Q ss_pred --CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC--CCCeeEEEEccCCCcceEEEEEEeCCcceEEE
Q 022184 153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAV 228 (301)
Q Consensus 153 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (301)
.+..+++++..|..+++++++.|..|+|||+.+++....+++.+ ++..-.+...|.|.+ +++...|.++.+
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~ 667 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCF 667 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEE
Confidence 22478999999999999999999999999999999999998644 345677889999998 799999999999
Q ss_pred EEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 229 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+|.-+++++....+|...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999999999999999999999999864
No 141
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.7e-24 Score=158.34 Aligned_cols=197 Identities=19% Similarity=0.197 Sum_probs=146.7
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~ 141 (301)
|.-.+..+-...++.+|++++.|..|.+|++. ++....+.. ....-+..+.||+|+++++++..-.|++|.+
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-------ccccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 34456666667778899999999999999998 433221111 1233456789999999999999999999986
Q ss_pred C---Cc-----ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC----ceEEEEee------cCCCCeeEE
Q 022184 142 P---SL-----RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTR------NSDEKIELC 203 (301)
Q Consensus 142 ~---~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~------~~~~~v~~~ 203 (301)
- .| ..+..+.+|+..|..++|+|+.+.+++.+.||++++||++-. +....++. ..+.....+
T Consensus 258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL 337 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL 337 (420)
T ss_pred EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence 2 22 234567889999999999999999999999999999998531 11111111 112234489
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
+.+|.|+. ++.+....+++|..++++....+ ..|...|.+++|+++|+++++++ |..++++.-
T Consensus 338 ~lsP~g~~------lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 338 ELSPSGDS------LAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred EeCCCCcE------EEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 99999995 44455667999999988776544 45788999999999999999997 567888763
No 142
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.5e-23 Score=170.47 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=193.5
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceE-EEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 109 (301)
+.|+++++|.-.. +.+ .....+.+|.+-|.. +++.+ ++-.+++|+.|+.|.+|.+.+.... ....
T Consensus 32 sRd~t~~vw~~~~--~~~----l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~-------~~Lk 98 (745)
T KOG0301|consen 32 SRDGTVKVWAKKG--KQY----LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL-------YTLK 98 (745)
T ss_pred CCCCceeeeeccC--ccc----ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch-------hhhh
Confidence 3677788886432 222 113446778887777 88876 4446999999999999999877652 3334
Q ss_pred CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (301)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 189 (301)
.|...|.+++...++. +++|+.|.++++|.. ++....+.+|...|++++.-|++ .++||+.|.+|++|.- ++.+
T Consensus 99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l 172 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLL 172 (745)
T ss_pred ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchh
Confidence 5888999998877776 999999999999975 45556688999999999999988 8999999999999974 7788
Q ss_pred EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (301)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 269 (301)
.++.+|.+ .|+.+++-+++. +++++.||.|++|++ +++.+....+|...+++++..+++..++++++|++++
T Consensus 173 ~tf~gHtD-~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 173 KTFSGHTD-CVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhccchh-heeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 88888655 699999999988 589999999999999 6788889999999999999888899999999999999
Q ss_pred EEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 270 i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
||+.. ++.+.+. |+...|+++.+-++|.
T Consensus 245 iW~~~--e~~q~I~--lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 245 IWKKD--ECVQVIT--LPTTSIWSAKVLLNGD 272 (745)
T ss_pred EeecC--ceEEEEe--cCccceEEEEEeeCCC
Confidence 99987 4445442 2256888888877763
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.2e-24 Score=185.91 Aligned_cols=257 Identities=13% Similarity=0.153 Sum_probs=196.2
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 82 (301)
..+-+.++|.+...+..=++.|+ ..||.|.+|+-+..... ...........|++.|..+.|++... .||+|+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG-----~edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGG-----LEDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cccceeeeecccCCCccceeecc-----ccCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 45667889987643322233333 27788888877663111 12223456788999999999999655 999999
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCc--cEEE
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVLD 159 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~i~~ 159 (301)
.||.|.|||+.+.+...... .....+.|.+++|+. ....|++++.+|.+.|||++..+.+..+..+.. .+..
T Consensus 137 ~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 99999999998865533221 222457899999998 456788999999999999998888777655543 5789
Q ss_pred EEecCCCc-EEEEEeCCC---cEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 160 MDFSLDSE-FLATTSTDG---SARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 160 ~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
++|+|+.. .+++++.|. .|.+||+|... +++.+..|. ..|.++.|++.+..+ +++++.|++|.+|+.+++
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~-~GilslsWc~~D~~l----llSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ-RGILSLSWCPQDPRL----LLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc-cceeeeccCCCCchh----hhcccCCCCeeEecCCCc
Confidence 99999764 677777554 59999998654 445555554 459999999998653 689999999999999999
Q ss_pred eEeeeeeccCCCcEEEEEcCCCC-EEEEeeCCCcEEEEeCCCce
Q 022184 235 NKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~~~~~~~ 277 (301)
+.+..+......+..+.|+|... .+++++.||.|.||.+....
T Consensus 287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999988888999999999654 88999999999999997653
No 144
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.5e-23 Score=168.41 Aligned_cols=210 Identities=13% Similarity=0.237 Sum_probs=175.6
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
.|..+.+|..+... +...+.+|...|.++....++. +++|+.|.++++|....... ....|+
T Consensus 79 ~D~~i~v~~~~~~~--------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~---------~l~gH~ 140 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAE--------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY---------SLQGHT 140 (745)
T ss_pred ccceEEEEecCCCC--------chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc---------ccCCcc
Confidence 55666676665433 3567899999999999888887 99999999999999865432 234588
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 192 (301)
..|.+++.-|++ .+++|+.|.+|++|.- ++.+..+.+|.+.|+.+++-+++ .|++++.||.|++|++ +++++..+
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee
Confidence 999999999987 7999999999999984 77788899999999999999765 5899999999999999 78888888
Q ss_pred eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
.+|.. .+++++...++.. +++.++|+++++|+.. ++.+.+......++++.+-++|. +++|+.||.|+||.
T Consensus 216 ~ghtn-~vYsis~~~~~~~-----Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 216 HGHTN-FVYSISMALSDGL-----IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eccce-EEEEEEecCCCCe-----EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 87765 5999997766665 7999999999999987 66667777777899999988886 78888899999998
Q ss_pred CC
Q 022184 273 VK 274 (301)
Q Consensus 273 ~~ 274 (301)
.+
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 76
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.4e-23 Score=173.39 Aligned_cols=227 Identities=12% Similarity=0.156 Sum_probs=186.2
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 138 (301)
..|+..-+.++|.|+|++|++++.||.|++|+....... ...+. +...|.+++. ++++|++++.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIAC--YSNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEee--cccceEEeeccceEEE
Confidence 368888999999999999999999999999998766321 22222 4455655554 5669999999999999
Q ss_pred EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
|.+.+++.-..+..-.-++.+++++-+|+++|.|+.|-.|++.++.+......+.++ .++|.++.|+|.++. ++
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~f-----LA 154 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNF-----LA 154 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCCE-----EE
Confidence 999988765455555678999999999999999999999999999998888888765 568999999999997 78
Q ss_pred EeCCcceEEEEEccCceEeeeeecc--------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc
Q 022184 219 QRGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (301)
Q Consensus 219 ~~~~~~~i~~~d~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 290 (301)
+..-||.|++||+.++.....+... ...+..++|+|+|..+++.+.|+.|++|+..+++....+...+....
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 8889999999999988765443321 23567799999988888888999999999999988877754442455
Q ss_pred EEEEEEccCCC
Q 022184 291 IALVEFCPTQR 301 (301)
Q Consensus 291 v~~~~~spdg~ 301 (301)
+..++|+|+|+
T Consensus 235 ~~~~~wsPnG~ 245 (933)
T KOG1274|consen 235 FSDLQWSPNGK 245 (933)
T ss_pred eEEEEEcCCCc
Confidence 99999999996
No 146
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-24 Score=159.71 Aligned_cols=225 Identities=14% Similarity=0.181 Sum_probs=184.6
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
...+.||.+.|..++.......+.+++.|.+-+||.++++.+. .....|.+.|++++|++.+.++++++.|++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-------~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-------ATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-------eeecccccceeeEEeccccceEEEccCCcc
Confidence 4568899999999999887788899999999999999999883 334458899999999999999999999999
Q ss_pred EEEEeC------CCc----------------------------------ceecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184 136 LRIMHW------PSL----------------------------------RIILDEPKAHKSVLDMDFSLDSEFLATTSTD 175 (301)
Q Consensus 136 i~v~d~------~~~----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 175 (301)
-.||.. ... .++..+.+|...|.+..|-..|+.+++++.|
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999962 110 0123455677788889999999999999999
Q ss_pred CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeeccCCCcEEEEEcC
Q 022184 176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISL 254 (301)
Q Consensus 176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~ 254 (301)
.+-.+||+++++.+..+.+|.. ..+.++-+|..+. +++++.|.+.++||++.. ..+..+.+|...|+++.|..
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~-ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDS-ELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ccceeeeeccCceeccccCcch-hccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 9999999999999999988755 5888888999886 789999999999999843 23567899999999999987
Q ss_pred CCCEEEEeeCCCcEEEEeCCCce-eeccccccccCccEEEEEEc
Q 022184 255 DGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFC 297 (301)
Q Consensus 255 ~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~s 297 (301)
+. .+++|+.|.+|++||+++.. ++..+.. .++++.++.+
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs 407 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVS 407 (481)
T ss_pred CC-ceeecCCCceEEEeeeccccCcceeeec---CCccceeEee
Confidence 65 58899999999999998753 3444322 3455555554
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.7e-23 Score=153.75 Aligned_cols=269 Identities=17% Similarity=0.209 Sum_probs=188.2
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee------eCCceeccccccCCcceEEEEC-------C
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY------TSPLVTYVFDESEGDPMTIAVN-------P 73 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~-------~ 73 (301)
...+.|+|| +..+.+ ...++.+++|.+.+...... ........+ .....|...+|- |
T Consensus 52 ~kgckWSPD---GSciL~------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 52 LKGCKWSPD---GSCILS------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hccceeCCC---CceEEe------ecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCC
Confidence 346789988 444433 23788999998865432211 011111111 124567888874 6
Q ss_pred CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC---CCeeEEEEeeCCCEEEEeecCCeEEEEeC-CCccee--
Q 022184 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---GPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRII-- 147 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~v~d~-~~~~~~-- 147 (301)
+..++++.+++.-|++||.-+++..... ....|. ....+++|+|||..|++|. ...|++||+ +.|...
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy-----~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASY-----RAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred ccceeeeccccCceeeeeccccccccch-----hhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 7789999999999999999988763322 112222 3457899999999998876 678999999 454421
Q ss_pred cccc-----cCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 148 LDEP-----KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 148 ~~~~-----~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
.... +..+-|.+++|+| +.+.++.++...++-||.-..+.++..+-++ .+.|+.+.|.++|+++| ..+.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~lf----sGaR 270 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNKLF----SGAR 270 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCeec----cccc
Confidence 1111 2245688999999 5569999999999999998888888888755 45699999999999832 3344
Q ss_pred CcceEEEEEccCceE-eeeeeccCC-CcEE--EEEcCCCCEEEEeeCCCcEEEEeCCC-ceeeccccccccCccEEEEEE
Q 022184 222 DKALLAVYDISTWNK-IGHKRLLRK-PASV--LSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~-~~~~~~~~~-~v~~--~~~s~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~ 296 (301)
.+-.|..||++.... +..+..|.. .-.. ....|++++|++|+.||.|++||+++ +.....+ ..+ +..++.+++
T Consensus 271 k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvsl 348 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSL 348 (406)
T ss_pred CCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceec
Confidence 577899999987543 334444433 2223 34578899999999999999999998 5545544 456 788999988
Q ss_pred cc
Q 022184 297 CP 298 (301)
Q Consensus 297 sp 298 (301)
+|
T Consensus 349 nP 350 (406)
T KOG2919|consen 349 NP 350 (406)
T ss_pred Cc
Confidence 87
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=1.5e-23 Score=160.63 Aligned_cols=288 Identities=13% Similarity=0.107 Sum_probs=197.1
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee-eCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
..||+.+.|.+.. .+.+|+|+ .|..++||........-. ........+..|...|+++.|+|+|+.||+|+
T Consensus 13 ~~pv~s~dfq~n~--~~~laT~G------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNS--LNKLATAG------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCc--ccceeccc------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 4678888888553 44777766 677889999865432110 12223456889999999999999999999999
Q ss_pred cCCcEEEEEEcCCcc-----c----cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184 83 TNGGCKLFEVYGGAT-----D----INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~-----~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 153 (301)
.+|.+.+|....-.. . ............|...+..++|+|++.++++++.|..+++||+..|+....+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 999999999872111 0 0001111122236788999999999999999999999999999999999888889
Q ss_pred CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-----e----cCC-------------CCeeEEEEccCCCc
Q 022184 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-----R----NSD-------------EKIELCRFSKDGTK 211 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~----~~~-------------~~v~~~~~~~~~~~ 211 (301)
...+..++|.|-++++++-+.|...+.+++.....+.... . +.. .-...++|+|+|..
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 8999999999999999999999887777765433322211 0 000 12456789999986
Q ss_pred ceEEE-EEEeCC---cceEEEEEccCc-eEeeeeeccCCCcEEEEEcC------------------CCCEEEEeeCCCcE
Q 022184 212 PFLFC-TVQRGD---KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGSKDGDI 268 (301)
Q Consensus 212 ~~~~~-~~~~~~---~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~~d~~i 268 (301)
+..-. ++..+. -+..++|+-... ++...+.....+...+.|+| -+..+|.++. +.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceE
Confidence 21100 000111 123345543321 22333444444445555544 1223455554 589
Q ss_pred EEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 269 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
++||.++.+++......| -..++.++|++||.
T Consensus 324 yvydtq~~~P~~~v~nih-y~~iTDiaws~dg~ 355 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGS 355 (434)
T ss_pred EEeccccccceEEEeeee-eeeecceeecCCCc
Confidence 999999999988888889 89999999999973
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.5e-22 Score=148.81 Aligned_cols=233 Identities=16% Similarity=0.147 Sum_probs=169.6
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEE
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLR 137 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 137 (301)
.+|.+-|.++.|.+.|+++|+|+.|++++|||.+.......... .-..|.+.|..+.|.+ -|+.+|+++.|+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts---~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTS---SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEee---eEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 57899999999999999999999999999999866554333322 1224788999999966 589999999999999
Q ss_pred EEeCCC---------cceecccccCCccEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCceEEEE------e------e
Q 022184 138 IMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFL------T------R 194 (301)
Q Consensus 138 v~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~------~ 194 (301)
||.-.. .....++....+.|+++.|.| -|-.||+++.||.+|||+....-.+... . .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997421 112234445567899999999 4668999999999999987654332222 1 1
Q ss_pred cCCCCeeEEEEccCCCcceEEEEEEeCCc-----ceEEEEEccC----ceEeeeeeccCCCcEEEEEcCC----CCEEEE
Q 022184 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDIST----WNKIGHKRLLRKPASVLSISLD----GKYLAM 261 (301)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~----~~~~~~~~~~~~~v~~~~~s~~----~~~l~~ 261 (301)
.+..+..|+.|+|..-..-+ ++.++.+ +.+.||.... ...+..+..+..+|+.++|.|+ -..||+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 23346789999976543222 3444433 4788887543 3456677789999999999996 357999
Q ss_pred eeCCCcEEEEeCCCc--------------------eeeccccccccCccEEEEEEccCC
Q 022184 262 GSKDGDICVVDVKKM--------------------EINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 262 ~~~d~~i~i~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
++.|| |+||++... +.+..+ ..| .+.|+.+.|+-.|
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H-~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDH-NGEVWRVRWNMTG 300 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCC-CCceEEEEEeeee
Confidence 99999 999998731 111222 567 8899999997654
No 150
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-23 Score=160.69 Aligned_cols=230 Identities=12% Similarity=0.094 Sum_probs=178.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.+||.|++-+|. +.+++.|+ ..+.+.+|.+... .+ ...+.+|-..|+++.|+-||.+|++|+.
T Consensus 81 Pg~v~al~s~n~---G~~l~ag~------i~g~lYlWelssG--~L------L~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 81 PGPVHALASSNL---GYFLLAGT------ISGNLYLWELSSG--IL------LNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccceeeeecCCC---ceEEEeec------ccCcEEEEEeccc--cH------HHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 478999999877 56777655 5556677776532 22 4457899999999999999999999999
Q ss_pred CCcEEEEEEcCCccccc--cccccCCCCCCCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcceecccccCCccEEE
Q 022184 84 NGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~ 159 (301)
||.|.+|.+..--.... ........-.|.-+|+.+...+. ..++++++.|.++++||+..+..+.++. ....+.+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~a 222 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKA 222 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCccee
Confidence 99999999864322111 11111223346778999888764 4579999999999999999998876653 4568999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCC----------------ceEEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCC
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDG----------------VAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD 222 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
++.+|-++.++.|+.+|.|.+.++..- .....+.+|.. ..|+|++.+-||.. +++|+.
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl-----LlSGd~ 297 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL-----LLSGDE 297 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE-----EEeeCC
Confidence 999999999999999999998887532 22334444443 37999999999997 899999
Q ss_pred cceEEEEEccCceEeeeeeccCCCcEEEEEcCCC
Q 022184 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDG 256 (301)
Q Consensus 223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (301)
||.+++||+.+.++++.+....++|+.+.+.|=.
T Consensus 298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred CCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 9999999999999888887678899999996643
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1e-22 Score=165.73 Aligned_cols=273 Identities=14% Similarity=0.178 Sum_probs=195.3
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
-+.+-|+|+ .++++.-+ .-|..++|. +.+...+. ....+.||.+.|.+++|+|.|++|++++.|.+
T Consensus 319 F~g~lw~~n---~~~ii~~g------~~Gg~hlWk-t~d~~~w~----~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT 384 (764)
T KOG1063|consen 319 FWGGLWSPN---SNVIIAHG------RTGGFHLWK-TKDKTFWT----QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT 384 (764)
T ss_pred eeeEEEcCC---CCEEEEec------ccCcEEEEe-ccCcccee----eccccccccccceeeeecCCCCEEEEeccccc
Confidence 456677766 34444432 345568887 33333332 24457899999999999999999999999999
Q ss_pred EEEEEEcCCcc---------------------------------------------------------------------
Q 022184 87 CKLFEVYGGAT--------------------------------------------------------------------- 97 (301)
Q Consensus 87 i~~w~~~~~~~--------------------------------------------------------------------- 97 (301)
-++|-.-..+.
T Consensus 385 TRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~V 464 (764)
T KOG1063|consen 385 TRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANV 464 (764)
T ss_pred eeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccc
Confidence 99876542221
Q ss_pred ----------------------------------------------ccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184 98 ----------------------------------------------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (301)
Q Consensus 98 ----------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (301)
...+..+..+...|.-.|++++.+|+++++|+++
T Consensus 465 paLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaC 544 (764)
T KOG1063|consen 465 PALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASAC 544 (764)
T ss_pred ccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehh
Confidence 0000111122244566899999999999999997
Q ss_pred cC-----CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EE--EeecCCCCeeEE
Q 022184 132 VD-----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TF--LTRNSDEKIELC 203 (301)
Q Consensus 132 ~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~--~~~~~~~~v~~~ 203 (301)
.. ..|++|+..+...+..+..|.-.|+.++|+||+++|++.++|+++.+|........ .. ....|...|.++
T Consensus 545 KS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred hhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 54 46899999888888888899889999999999999999999999999987433211 11 123345579999
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCc--eEeee--eeccCCCcEEEEEcCC-----CCEEEEeeCCCcEEEEeCC
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGH--KRLLRKPASVLSISLD-----GKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~--~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~i~~~~ 274 (301)
.|+|++.+ +++++.|.+|++|..... +.+.. ...+...|+.+++.|- +..+++|-..|.|.+|...
T Consensus 625 sW~pde~~-----FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 625 SWSPDEKY-----FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccCcccce-----eEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 99999998 799999999999998776 33322 2345678999999772 3378888899999999965
Q ss_pred Cce---------eeccc--cccccCccEEEEEEccC
Q 022184 275 KME---------INHWS--KRLHLGTSIALVEFCPT 299 (301)
Q Consensus 275 ~~~---------~~~~~--~~~~~~~~v~~~~~spd 299 (301)
.-+ ..... ..+| .+.|+.+.|+|.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~-~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 700 REHRQVTVGTFNLDTRLCATIGP-DSAVNRLLWRPT 734 (764)
T ss_pred cccccccceeeeeccccccccCh-HHhhheeEeccc
Confidence 111 11111 1234 678999999985
No 152
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=2e-22 Score=148.24 Aligned_cols=241 Identities=13% Similarity=0.215 Sum_probs=182.5
Q ss_pred EEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEecC-------CcEEEEEE
Q 022184 21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEV 92 (301)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d-------~~i~~w~~ 92 (301)
-+.+|+... -.+|.+.+..+++....+. ...|..|.+.|..++-+|-.+ .|+++-.+ ..+-||.+
T Consensus 28 cFlvgTnsl--K~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~i 100 (370)
T KOG1007|consen 28 CFLVGTNSL--KEDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQI 100 (370)
T ss_pred EEEEecccc--CCcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEec
Confidence 444555433 2568999999999886553 346778899999999999555 55555332 24779998
Q ss_pred cCCccccccc-cccCCCC--CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee-cccc-----cCCccEEEEEec
Q 022184 93 YGGATDINLL-AKKMPPL--QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFS 163 (301)
Q Consensus 93 ~~~~~~~~~~-~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~-----~~~~~i~~~~~~ 163 (301)
.......... ......+ .+.+.+.|+.|.|++..+++-. |..|.+|++..+..+ ..+. .+....++-+|+
T Consensus 101 pe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 101 PEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred ccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 7654431111 0111111 2346899999999999888877 888999999876652 2221 233467888999
Q ss_pred C--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Eeeee
Q 022184 164 L--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK 240 (301)
Q Consensus 164 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~ 240 (301)
| |++.+++.+ |+++..||+|+.++...+...|...+..+.|+|+-+++ ++++++||.|++||.+..+ ++..+
T Consensus 180 pHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 180 PHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCcccccc
Confidence 9 777777764 79999999999999888888888889999999998874 7999999999999998654 57788
Q ss_pred eccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEeCC
Q 022184 241 RLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 241 ~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~~ 274 (301)
..|...++++.|+|. .++|++++.|..|.+|...
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred CCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 899999999999994 6789999999999999764
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=151.18 Aligned_cols=195 Identities=15% Similarity=0.194 Sum_probs=154.7
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 145 (301)
..|+.|++.|.+||+|+.||.|.+||+.+..... ....|..+|.+++||+||+.|++++.|..|.+||+..|.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar-------~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR-------MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh-------hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 8899999999999999999999999999876421 222477899999999999999999999999999999999
Q ss_pred eecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecC----CCCeeEEEEccCCCcceEEEEEEe
Q 022184 146 IILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
++..+ ...++|+.+.|+|... ..++.-.+..-.+-++..++. ..+.... .....+..|.+.|++ +.+|
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~y-----IitG 171 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKY-----IITG 171 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCE-----EEEe
Confidence 77665 4567999999999433 333333444455555554222 1121111 112334468999998 7999
Q ss_pred CCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
...|.+.++|..+.+++..++... ..|..+.++..|+.|+.-+.|..|+.|+++
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 999999999999999988887766 789999999999999999999999999987
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.7e-22 Score=161.02 Aligned_cols=224 Identities=12% Similarity=0.161 Sum_probs=181.9
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
..+|.+++++.+.+.||.+-.+|.|.+|++...-....... .+....|.+++|++ +..|++.+.+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~-----g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH-----GPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe-----cCCCCceeeEEEcc-CCeEEeecCCceEEEEecc
Confidence 56799999999999999999999999999987654222221 13457899999995 4568888889999999999
Q ss_pred CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
+++....+....+.|++++.+|.+..++.|++||.+..++...++...... ....+++.+++|+|++.+ ++.|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~Gs 173 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAGGS 173 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEecc
Confidence 999988888888899999999999999999999988888887776654432 233468999999999998 79999
Q ss_pred CcceEEEEEccCceEeeee-----ecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184 222 DKALLAVYDISTWNKIGHK-----RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~~~~~-----~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 293 (301)
.||.|++||..++..+... ... ..-|+++.|-.++ .|++|...|.|.+||...+.+++.. ..| ...|.+
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~-~~h-~adVl~ 250 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH-SCH-DADVLA 250 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh-hhh-hcceeE
Confidence 9999999999988776521 111 1235666665554 7999999999999999999999887 577 888999
Q ss_pred EEEccCC
Q 022184 294 VEFCPTQ 300 (301)
Q Consensus 294 ~~~spdg 300 (301)
++-++++
T Consensus 251 Lav~~~~ 257 (691)
T KOG2048|consen 251 LAVADNE 257 (691)
T ss_pred EEEcCCC
Confidence 9988774
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=2.7e-22 Score=147.51 Aligned_cols=261 Identities=17% Similarity=0.183 Sum_probs=182.6
Q ss_pred ceeEEEeeeecCCCccEEEecCCcc-ccCCcCceeEeeeCCCcceeeeCC-ceecccc-ccCCcceEEEECCCCCeEEEE
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYTSP-LVTYVFD-ESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~~~ 81 (301)
+.|..++=+|. +..++++-.... .++.--.+.||.+..+-......+ .....+. .+-+.|.|+.|.|++..+++-
T Consensus 64 gEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 64 GEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM 141 (370)
T ss_pred cceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe
Confidence 55666666643 345555433211 112233467888865544322221 1122333 456689999999999999987
Q ss_pred ecCCcEEEEEEcCCccc-cccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCC-ccE
Q 022184 82 TTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSV 157 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i 157 (301)
. |..|.+|+++..... ..+.. .....+....++-+|+| +++.+++.+ |+++..||+++.+....+...+ ..+
T Consensus 142 ~-dn~i~l~~l~ess~~vaev~s--s~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~v 217 (370)
T KOG1007|consen 142 D-DNNIVLWSLDESSKIVAEVLS--SESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRV 217 (370)
T ss_pred c-cCceEEEEcccCcchheeecc--cccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhccee
Confidence 5 777999999877652 22221 12222455678889999 788887766 8999999999888776665444 579
Q ss_pred EEEEecCCCc-EEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-
Q 022184 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW- 234 (301)
Q Consensus 158 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~- 234 (301)
..+.|+|+-+ +|++|++||.|++||+|.-+ ++..+.. |...+.++.|+|....+ +++++.|..|.+|....-
T Consensus 218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceE----EEecCCCceeEEEeccccc
Confidence 9999999877 68899999999999998755 4455554 45689999999987764 688999999999965320
Q ss_pred ----------------------------eEeeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCc
Q 022184 235 ----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 235 ----------------------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~ 276 (301)
..+..+..|+..|++++||.-. -.+|+-+.||++.|=.+...
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 1134567788899999998754 45677799999998777543
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=7.5e-23 Score=160.81 Aligned_cols=247 Identities=16% Similarity=0.173 Sum_probs=187.1
Q ss_pred CceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE--ecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184 35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 35 ~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
..+++|++......-. ...... ...+.++.|+.... |+++ +.|..+++|.-.......... ... ..
T Consensus 12 d~~kl~D~s~~~~~~~----~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~----~k~-~g 79 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSE----YVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRV----RKL-TG 79 (673)
T ss_pred CceEEeecccccCccc----cccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCcccee----ecc-cc
Confidence 3568999876543221 111111 22389999987654 4443 467788888765542211111 111 11
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 192 (301)
..-.|++......++++|+..+.|+|||++.....+.+..|++.|+++.++-...+||+++..|.|.|..+.++.....+
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f 159 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF 159 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence 23445555555689999999999999999977777778888899999999999999999999999999999999888888
Q ss_pred eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCC-CCEEEEeeCCCcEEE
Q 022184 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLD-GKYLAMGSKDGDICV 270 (301)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i 270 (301)
....+..++-+.|+|..+++ +.+++++|.|.+||+....++.. ...|..+...++|+|. ..+|++.+.|.+|.+
T Consensus 160 ~~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred ecCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 87766678899999998874 68889999999999988776543 4678899999999994 578888999999999
Q ss_pred EeCCCceeeccccccccCccEEEEEEccCC
Q 022184 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
||.........+.. ..+.+.++|+++|
T Consensus 236 yD~~s~~s~~~l~y---~~Plstvaf~~~G 262 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY---SHPLSTVAFSECG 262 (673)
T ss_pred eecccccccceeee---cCCcceeeecCCc
Confidence 99998776665533 5689999999998
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=159.68 Aligned_cols=209 Identities=16% Similarity=0.156 Sum_probs=162.4
Q ss_pred cccccCCcceEEEECCCC--CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCC
Q 022184 58 VFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG 134 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 134 (301)
+..-+.++|++++|+|.. +.+|+|+.-|+|-+||+.+.+.... .......|..+|.++.|+| +-..+++.+.||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---ceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345678999999999954 4778888889999999963332111 1123345788999999999 567899999999
Q ss_pred eEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCc
Q 022184 135 HLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 135 ~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+|+.-|++.+.. +.........+.++.|+.+...++++..=|...+||++++.. ...+..|. ..|..++++|...+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeecCCCCch
Confidence 999999987643 233322334678888998888888888778999999998766 44444443 47999999999887
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEe----eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
. +++++.|++++|||++..... -....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 4 689999999999999864332 2345678899999999988779999999999999984
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=3.1e-22 Score=149.59 Aligned_cols=276 Identities=12% Similarity=0.124 Sum_probs=189.8
Q ss_pred CCCCceeEEEeeeecCC--CccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC----
Q 022184 1 MEGGGTVTCGSWIKRPE--NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---- 74 (301)
Q Consensus 1 ~~~~~~v~~~~w~~~~~--~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 74 (301)
|+.+.+|+.++|++--. ....+|+.|+. .+.+|....+...-..+ ...-..|......++|+-+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-------rvtiy~c~~d~~ir~lq---~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-------RVTIYECPGDGGIRLLQ---SYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-------EEEEEEECCccceeeee---eccCCCCCcceEEEEEEecCCCC
Confidence 45678999999984322 23566665543 34677776655211111 1112347778888998653
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceeccc---
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE--- 150 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~--- 150 (301)
..++|+++.-|.|+|.|+.+++.. .....|...|+.+.+.| +.+++++++.|..|++|++++..++..+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~-------~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCS-------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhc-------cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 448899999999999999988763 23345788999999999 4578999999999999999999887654
Q ss_pred ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---------------------------cCCCCeeEE
Q 022184 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELC 203 (301)
Q Consensus 151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------------------------~~~~~v~~~ 203 (301)
.+|.+.|.++.|+++|.+|++++.|.++++|++...+....+.. -|...|.|+
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv 257 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV 257 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence 56778999999999999999999999999999984332111110 011123333
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccC-ceE-------------eeeeeccCCCcEEEEE--cCCCCEEEEeeCCCc
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK-------------IGHKRLLRKPASVLSI--SLDGKYLAMGSKDGD 267 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-------------~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~ 267 (301)
.|-- ++ +++-+-++.|..|.... .+. +..+......++-+.| +|-+++||.|...|.
T Consensus 258 rw~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 258 RWFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCc
Confidence 3322 22 56667778999998721 111 2233333445565554 566899999999999
Q ss_pred EEEEeCCCceeeccc---cccccCccEEEEEEccCCC
Q 022184 268 ICVVDVKKMEINHWS---KRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 268 i~i~~~~~~~~~~~~---~~~~~~~~v~~~~~spdg~ 301 (301)
|++||++..++.... .... ...|...+|+.||.
T Consensus 331 v~vwdL~~~ep~~~ttl~~s~~-~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLTHSKS-GSTVRQTSFSRDGS 366 (385)
T ss_pred EEEEECCCCCCccCceEEeccc-cceeeeeeecccCc
Confidence 999999987653221 1112 56799999999874
No 159
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=5.2e-22 Score=164.79 Aligned_cols=202 Identities=18% Similarity=0.204 Sum_probs=173.3
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~ 141 (301)
-...+++++.++.|++.+.|...|.|-+|+++++.....+. ....|.++|++++...-++.+++++.+|.+++||.
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 35679999999999999999999999999999886533321 22358899999999888899999999999999999
Q ss_pred CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
.....+..+ .-...+.++..+.....++.+..|-.|+++|..+.+.++.+.+|. ..+++++|||||++ +++++
T Consensus 523 ~~k~l~~~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~-nritd~~FS~DgrW-----lisas 595 (910)
T KOG1539|consen 523 KKKVLKKSL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG-NRITDMTFSPDGRW-----LISAS 595 (910)
T ss_pred CCcceeeee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc-cceeeeEeCCCCcE-----EEEee
Confidence 887765544 334578888899888899999999999999999999999998765 47999999999999 89999
Q ss_pred CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCCC
Q 022184 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVKK 275 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~ 275 (301)
.|++|++||+.++..+..+. ...++.++.|||+|.+||+...| .-|++|.-.+
T Consensus 596 mD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred cCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999999886654 36788999999999999999888 6699997654
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=3.9e-21 Score=151.45 Aligned_cols=226 Identities=16% Similarity=0.194 Sum_probs=174.2
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
.....+|.+....++.+|+.+++++++.|+.+++|+ ..+..... ....++.|+.|+|.| .++.|...|.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~--------~~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK--------IIEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE--------EecCceeEeeccCcc-eEEEeeccce
Confidence 344568889999999999999999999999999999 33322111 134678999999999 9999999999
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
..+.|.++...+..... ..++..++|+|+|.+||.|+.|+.|+||.+... .........+..+|+.+.||+|+++
T Consensus 430 w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~--- 505 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF--- 505 (626)
T ss_pred EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce---
Confidence 99999998665544433 779999999999999999999999999998754 4444444455578999999999998
Q ss_pred EEEEEeCCcceEEEEEccCceEeeee------------------eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHK------------------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
+.+.+.|..|..|.....+.+... ..+...+..++-+.+.+++|+|...|+|++|...-.
T Consensus 506 --~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 506 --LVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred --EEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence 788888999999954322211111 122345666777888899999999999999998654
Q ss_pred eeec--cccccccCccEEEEEEccC
Q 022184 277 EINH--WSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 277 ~~~~--~~~~~~~~~~v~~~~~spd 299 (301)
+... ....+| ++.|++++|..+
T Consensus 584 s~rA~~he~~gh-s~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 584 SPRAPSHEYGGH-SSHVTNVAFLCK 607 (626)
T ss_pred CCcccceeeccc-cceeEEEEEeeC
Confidence 3332 223678 899999999764
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=145.48 Aligned_cols=247 Identities=15% Similarity=0.184 Sum_probs=178.3
Q ss_pred CCCCceeEEEeeeecC----CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCC---cceEEEECC
Q 022184 1 MEGGGTVTCGSWIKRP----ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNP 73 (301)
Q Consensus 1 ~~~~~~v~~~~w~~~~----~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~ 73 (301)
|..+..|+..+|.+.- ...+++|+.. .++-|.+|+.-... +.. ....-.|.+ ...+++|+|
T Consensus 101 ~~eg~tvydy~wYs~M~s~qP~t~l~a~ss------r~~PIh~wdaftG~--lra----Sy~~ydh~de~taAhsL~Fs~ 168 (406)
T KOG2919|consen 101 YQEGETVYDYCWYSRMKSDQPSTNLFAVSS------RDQPIHLWDAFTGK--LRA----SYRAYDHQDEYTAAHSLQFSP 168 (406)
T ss_pred eccCCEEEEEEeeeccccCCCccceeeecc------ccCceeeeeccccc--ccc----chhhhhhHHhhhhheeEEecC
Confidence 3457789999998432 1245666644 56667888764332 211 111222333 356899999
Q ss_pred CCCeEEEEecCCcEEEEEEc-CCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184 74 SGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 151 (301)
||.+|++| ....|++||+. .+.............+...+-+.+++|+| +.+.++.++....+-||.-..+.++..+.
T Consensus 169 DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg 247 (406)
T KOG2919|consen 169 DGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG 247 (406)
T ss_pred CCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec
Confidence 99999986 56679999994 33332221111111223357789999999 66789999999999999888888888888
Q ss_pred cCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEeecCCCCeeEE--EEccCCCcceEEEEEEeCCcceEE
Q 022184 152 KAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTRNSDEKIELC--RFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
+|.+.|+.+.|.++|+.|++|+ .|..|..||+|.. .++..+..+....-..+ ...|+++. +++++.+|.|+
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~-----LasG~tdG~V~ 322 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI-----LASGDTDGSVR 322 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce-----eeccCCCccEE
Confidence 8999999999999999999988 4778999999864 44455554443223344 44678887 78999999999
Q ss_pred EEEccC-ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184 228 VYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (301)
Q Consensus 228 ~~d~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (301)
+||+++ +..+..+..+...++.++++|--.++|+++..
T Consensus 323 vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999998 66677777788899999999998888888764
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1e-21 Score=146.88 Aligned_cols=245 Identities=14% Similarity=0.147 Sum_probs=174.5
Q ss_pred CceeEEEeeeecCCC-ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184 4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS 81 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 81 (301)
...-+-|+|+-+... .-++|+|| ..|.|+|.++.... + ...+.+|...|+.+.++|+. ++++++
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G------~~GvIrVid~~~~~--~------~~~~~ghG~sINeik~~p~~~qlvls~ 154 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGG------YLGVIRVIDVVSGQ--C------SKNYRGHGGSINEIKFHPDRPQLVLSA 154 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeec------ceeEEEEEecchhh--h------ccceeccCccchhhhcCCCCCcEEEEe
Confidence 445678899988764 45666665 44556776654332 2 34578999999999999965 578899
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc------------
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------------ 149 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~------------ 149 (301)
+.|..|++|++++..+...+ -....|.+.|.++.|+++|.+|++++.|.++++|+++..+....
T Consensus 155 SkD~svRlwnI~~~~Cv~Vf----GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTDVCVAVF----GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred cCCceEEEEeccCCeEEEEe----cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999999999998774433 23345889999999999999999999999999999973221100
Q ss_pred ----------------cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeC-CCCceEEE-------------EeecCCCC
Q 022184 150 ----------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTF-------------LTRNSDEK 199 (301)
Q Consensus 150 ----------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~-------------~~~~~~~~ 199 (301)
..-|...|.|+.|- |+++++-+-++.|..|.. +-++.+.. +.-+ ...
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccc
Confidence 01133345555554 678999898999999987 22222111 1111 112
Q ss_pred eeEE--EEccCCCcceEEEEEEeCCcceEEEEEccCceEee--ee--eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 200 IELC--RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 200 v~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
+.-+ +|.|-++. ++.+...|.|.+||++..++.. ++ ......|+..+||.||..|+..+.|+.|.-||.
T Consensus 308 iWfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eEEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4444 45566665 6889999999999999876631 11 122357899999999999999999999999985
Q ss_pred C
Q 022184 274 K 274 (301)
Q Consensus 274 ~ 274 (301)
.
T Consensus 383 v 383 (385)
T KOG1034|consen 383 V 383 (385)
T ss_pred e
Confidence 3
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=2.5e-21 Score=157.66 Aligned_cols=262 Identities=13% Similarity=0.163 Sum_probs=189.0
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..|+.++|-|| +..++++.++ +++.||++.+.+ ...+++|.+.|++++|+.||+++|+|+.|
T Consensus 13 hci~d~afkPD---GsqL~lAAg~---------rlliyD~ndG~l------lqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 13 HCINDIAFKPD---GTQLILAAGS---------RLLVYDTSDGTL------LQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred cchheeEECCC---CceEEEecCC---------EEEEEeCCCccc------ccccccccceEEEEEEccCCceeccCCCc
Confidence 35788999988 3333332211 678888877655 45689999999999999999999999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecC
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL 164 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 164 (301)
..|.+|+.+-.. .-...|...|.|+.|+|-...|++++-+ ..-+|....... .+ ......+.+.+|+.
T Consensus 75 K~VI~W~~klEG---------~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K-~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 75 KSVIIWTSKLEG---------ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SK-HKSSSRIICCSWTN 142 (1081)
T ss_pred eeEEEecccccc---------eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hh-hhhheeEEEeeecC
Confidence 999999975332 2234588999999999988889988753 356777544332 11 12335789999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEe--ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
||++|+.|-.+|+|.+-+- +++....+. +....+|.+++|+|....-..-.++......++..|.+. |+.+..-+.
T Consensus 143 DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~ 220 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA 220 (1081)
T ss_pred CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc
Confidence 9999999999999999864 444444443 345568999999997542111124555666677777665 444444444
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.+-...++++-++|.++..|+.|+.+++|.-+ |-.+-++ ... ...|+.++..|+|+
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv-g~~-D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV-GEQ-DSWIWTVQAKPNSQ 276 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec-ccc-ceeEEEEEEccCCc
Confidence 45566789999999999999999999999854 4434333 223 67899999999885
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.7e-21 Score=162.21 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=149.5
Q ss_pred ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCC
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDG 134 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg 134 (301)
+..|...+.+++|+|||++|+.++.+ ..|++||+.+++... .... .+....++|+|||+.|+.+. .+|
T Consensus 199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------l~~~--~g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------VASF--RGHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------EecC--CCccCceeECCCCCEEEEEEecCC
Confidence 45677889999999999999987654 369999998764311 1111 12234689999999888765 577
Q ss_pred eEEEE--eCCCcceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCC
Q 022184 135 HLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 135 ~i~v~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
.+.|| |+.+++. ..+..+...+..+.|+|||+.|+..+ .++...||++... .....+ .+ .. ....|+|+|+
T Consensus 271 ~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG~ 345 (429)
T PRK01742 271 VLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADGK 345 (429)
T ss_pred cEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCCC
Confidence 65555 6655554 44555556778899999999877655 5788888876532 222222 22 22 4578999999
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC--CceeeccccccccC
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG 288 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~--~~~~~~~~~~~~~~ 288 (301)
. ++..+.+ .+.+||+.+++....... .....+.|+|||++|++++.++.+.+|.+. ++...+.+ ..| .
T Consensus 346 ~-----ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l-~~~-~ 415 (429)
T PRK01742 346 T-----LVMINGD-NVVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL-PGS-D 415 (429)
T ss_pred E-----EEEEcCC-CEEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc-cCC-C
Confidence 7 3334444 466699988765422222 233567899999999999999988887753 46656555 456 6
Q ss_pred ccEEEEEEccC
Q 022184 289 TSIALVEFCPT 299 (301)
Q Consensus 289 ~~v~~~~~spd 299 (301)
+.+..++|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77899999984
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=4.5e-21 Score=141.27 Aligned_cols=250 Identities=15% Similarity=0.207 Sum_probs=181.2
Q ss_pred CCCceeEEEeeeecCCC--ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCc-eeccccccCCcceEEEECC-CCCe
Q 022184 2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNP-SGDD 77 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~ 77 (301)
+...|++-+.|.|++.+ ..++|+ +...+++|+...+...+..... ....-..+..++++..|+. +-++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLAT--------s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLAT--------SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCccceEecCCccccCcchhhc--------ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 45678999999999743 456665 5567899999876554433221 1223345678899999988 6678
Q ss_pred EEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCeEEEEeCCCcceecc---cccC
Q 022184 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILD---EPKA 153 (301)
Q Consensus 78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~ 153 (301)
+.+++-|.+..|||++.+... . ...+.+.|..+|..++|...+ +.+++.+.||.+++||++..+.... -...
T Consensus 166 igtSSiDTTCTiWdie~~~~~-~---vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSG-T---VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred eEeecccCeEEEEEEeecccc-c---eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 889999999999999987220 0 013445688999999999854 4689999999999999987654322 2233
Q ss_pred CccEEEEEecC-CCcEEEEEeCC-CcEEEEeCCCC-ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 154 HKSVLDMDFSL-DSEFLATTSTD-GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 154 ~~~i~~~~~~~-~~~~l~~~~~d-~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
..+...++|++ |-+++|+-..| ..|.+.|+|.. .++..+..| ...|+.++|.|..... +.++++|.++.+||
T Consensus 242 ~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~h----ictaGDD~qaliWD 316 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSH----ICTAGDDCQALIWD 316 (364)
T ss_pred CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCce----eeecCCcceEEEEe
Confidence 45788999998 55688876655 46999999975 456666655 5579999999987653 79999999999999
Q ss_pred ccCceE------eeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEE
Q 022184 231 ISTWNK------IGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICV 270 (301)
Q Consensus 231 ~~~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i 270 (301)
+.+.-. +.... .++.|..+.|++ .+.+++.+.. +++.|
T Consensus 317 l~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred cccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 975322 11122 357899999996 5678887764 34444
No 166
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.5e-20 Score=138.77 Aligned_cols=209 Identities=16% Similarity=0.154 Sum_probs=155.0
Q ss_pred eEEEEecCCcEEEEEEcCCc----ccccc-ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc
Q 022184 77 DFVCSTTNGGCKLFEVYGGA----TDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP 151 (301)
Q Consensus 77 ~l~~~~~d~~i~~w~~~~~~----~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 151 (301)
.|++|+....|.-+++.... ...+. .........|.+++++++. ++.++++|+.|-+|+|||++....+..+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee
Confidence 36677777777777665332 00111 1112233357789999988 58899999999999999999998888888
Q ss_pred cCCccEEEEEecCCCc--EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 152 KAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 152 ~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
.|.+.|+++.|.++-. .|++|+.||.|.+|+....+.+..++.|.. .|+.++.+|.++. .++.+.|+.+++|
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-~Vt~lsiHPS~KL-----ALsVg~D~~lr~W 154 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-QVTDLSIHPSGKL-----ALSVGGDQVLRTW 154 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc-ccceeEecCCCce-----EEEEcCCceeeee
Confidence 9999999999998765 899999999999999999999999988766 4999999999997 7888999999999
Q ss_pred EccCceEeeeeeccCCCcEEEEEcC---------------------------------------CCCEEEEeeCCCcEEE
Q 022184 230 DISTWNKIGHKRLLRKPASVLSISL---------------------------------------DGKYLAMGSKDGDICV 270 (301)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~---------------------------------------~~~~l~~~~~d~~i~i 270 (301)
|+-.++.-..... ....+.+.|+| ++..|++|+.|+.|.+
T Consensus 155 NLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred hhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence 9876543211111 11111123333 3456777888888888
Q ss_pred EeCCCceeeccccccccCccEEEEEE
Q 022184 271 VDVKKMEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~v~~~~~ 296 (301)
||.++..+...+ .+| ...|.++.+
T Consensus 234 ~D~ds~~~~~~~-~AH-~~RVK~i~~ 257 (362)
T KOG0294|consen 234 KDTDSDTPLTEF-LAH-ENRVKDIAS 257 (362)
T ss_pred eccCCCccceee-ecc-hhheeeeEE
Confidence 888876666655 577 777777763
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.3e-20 Score=132.10 Aligned_cols=245 Identities=11% Similarity=0.109 Sum_probs=172.1
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
.|++-+|+|. .++++.|. ..+.|.++.+..-...... ........++|.++|+.++|+ .++|+++ .
T Consensus 12 tvf~qa~sp~---~~~l~agn------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-g 79 (325)
T KOG0649|consen 12 TVFAQAISPS---KQYLFAGN------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-G 79 (325)
T ss_pred HHHHHhhCCc---ceEEEEec------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-c
Confidence 4667788877 67777766 6677788877653322211 112233458999999999997 4567766 4
Q ss_pred CCcEEEEEEcCCccc---cccccccCCCC----CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184 84 NGGCKLFEVYGGATD---INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS 156 (301)
Q Consensus 84 d~~i~~w~~~~~~~~---~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 156 (301)
||.|+-|........ ..++. ..... ..-..|+++...|..+.++.++.|+.++-||+++|+..+.+.+|.+.
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred CceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 599999988654331 11111 11111 12257899999997766777778999999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---------CCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
+.++.--.....+++|+.||++++||+++++.+..+.... +..|.+++- +..+ ...+....+.
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edW------lvCGgGp~ls 230 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDW------LVCGGGPKLS 230 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCce------EEecCCCcee
Confidence 9999885555679999999999999999999888774321 222344433 3343 3344556799
Q ss_pred EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
+|.++..++...+. ...++..+.|..| .+++++..+.|.-|.+.
T Consensus 231 lwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 231 LWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEeccCCCceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec
Confidence 99999988776554 3566777888544 67778777788888874
No 168
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-21 Score=158.48 Aligned_cols=240 Identities=13% Similarity=0.147 Sum_probs=171.5
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
+..+.|-||+++..+.-- .. ..... -....|+.+.|.| |..+||+++.||.|++|.+..+...............
T Consensus 600 g~gG~iai~el~~PGrLP-Dg-v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLP-DG-VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred CCCceEEEEEcCCCCCCC-cc-ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence 356677888886544211 11 00111 1245699999999 7789999999999999999987765555544444455
Q ss_pred CCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-
Q 022184 111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA- 188 (301)
Q Consensus 111 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 188 (301)
|...|+++.|+| ..+.|++++.|.+|++||+.+++...++.+|.+.|.+++|+|+|+.+++.+.||+|++|..++++.
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 788999999999 667899999999999999999999889999999999999999999999999999999999987653
Q ss_pred EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce--EeeeeeccC-CCcEEEEEcCCC-CEEEEeeC
Q 022184 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLR-KPASVLSISLDG-KYLAMGSK 264 (301)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~-~~v~~~~~s~~~-~~l~~~~~ 264 (301)
++.-.+..+.+-..+.|.-+|+++ +...+......+|.+||..+-. ++......- -.+.-..+.+|. -++++|-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~v-iv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIV-IVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEE-EEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCC
Confidence 333333334445678899999973 2222333455778899876533 221111111 111222455664 46677888
Q ss_pred CCcEEEEeCCCc
Q 022184 265 DGDICVVDVKKM 276 (301)
Q Consensus 265 d~~i~i~~~~~~ 276 (301)
|..|.+|++-..
T Consensus 835 D~~v~~yEv~~e 846 (1012)
T KOG1445|consen 835 DRFVNMYEVIYE 846 (1012)
T ss_pred CceEEEEEecCC
Confidence 999999998543
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.3e-21 Score=157.15 Aligned_cols=227 Identities=19% Similarity=0.223 Sum_probs=171.4
Q ss_pred eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC--EEEEeec
Q 022184 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGV 132 (301)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~ 132 (301)
....+.+|++.|.++...|.|.+|++|+.||++++|.+.++.+.... .-.+.|.|++|+|.++ .||++-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--------~~d~~I~~vaw~P~~~~~vLAvA~- 462 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--------QFDSEIRSVAWNPLSDLCVLAVAV- 462 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--------eecceeEEEEecCCCCceeEEEEe-
Confidence 34578999999999999999999999999999999999999874333 2346899999999654 344443
Q ss_pred CCeEEEEeCCCcc-------------------------------------eecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184 133 DGHLRIMHWPSLR-------------------------------------IILDEPKAHKSVLDMDFSLDSEFLATTSTD 175 (301)
Q Consensus 133 dg~i~v~d~~~~~-------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 175 (301)
...+.+.+..-|. -+.....|...|..+.|+..|.||++...+
T Consensus 463 ~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~ 542 (733)
T KOG0650|consen 463 GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD 542 (733)
T ss_pred cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC
Confidence 3334444421110 011223456789999999999999998754
Q ss_pred ---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184 176 ---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (301)
Q Consensus 176 ---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (301)
..|.|+++........+... .+.+.++.|+|...++| .+ ....|++||+..++.+..+...-..|..++.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~ks-kG~vq~v~FHPs~p~lf-----Va-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKS-KGLVQRVKFHPSKPYLF-----VA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred CCcceEEEEecccccccCchhhc-CCceeEEEecCCCceEE-----EE-eccceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 46899999877665555433 34699999999988732 22 2557999999988777766666678999999
Q ss_pred cCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 253 SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 253 s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
+|.|..|+.++.|+++..||+.-..........| ...+++++|++
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ 660 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHK 660 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhcc
Confidence 9999999999999999999998664444333667 88888888876
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.1e-21 Score=156.30 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=175.0
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccc---cccCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL---AKKMPPL 109 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~ 109 (301)
.++++++|.+......-........++.+|.++|.|+++.++++.+++|+.||+|+.|++....-..... ...-...
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 7889999999332222112334467899999999999999999999999999999999876332211111 1112344
Q ss_pred CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc--cCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCC
Q 022184 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDG 186 (301)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~ 186 (301)
.|.+.+..+++|+....|++++.||+++.|+.....+ ..+. ..++....+++-... .+.++...-+.-.++++...
T Consensus 394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~ 472 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV 472 (577)
T ss_pred ccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh
Confidence 6788999999999888999999999999999765554 2222 222344566665332 22333223333334444444
Q ss_pred ceEEEEeecC------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEE
Q 022184 187 VAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (301)
Q Consensus 187 ~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 260 (301)
.....+.... ...+..+.+.|.+.. .+++..|+.|+++|..+++.+.....|...++++++.|+|.+|+
T Consensus 473 s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~ 547 (577)
T KOG0642|consen 473 SDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLM 547 (577)
T ss_pred hheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccccchheeeccceecceeecCCCceEE
Confidence 4443332111 124677888998876 68899999999999999999999999999999999999999999
Q ss_pred EeeCCCcEEEEeCCCceeeccc
Q 022184 261 MGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 261 ~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
+++.|+.+++|.+.........
T Consensus 548 s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 548 SGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred eecCCceeehhhccchheeecc
Confidence 9999999999999776655443
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=6.1e-20 Score=148.53 Aligned_cols=254 Identities=10% Similarity=0.079 Sum_probs=174.5
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~ 81 (301)
..+.|+.+.|.|. ...++... .|.+++.|++....-. . ...+.||.+.|.+++|.|... .|++|
T Consensus 99 H~nAifDl~wapg---e~~lVsas------GDsT~r~Wdvk~s~l~--G----~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 99 HKNAIFDLKWAPG---ESLLVSAS------GDSTIRPWDVKTSRLV--G----GRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred ccceeEeeccCCC---ceeEEEcc------CCceeeeeeeccceee--c----ceeecccccccchhhhccCCCcceeec
Confidence 4567899999973 44555543 4556699988654421 1 124679999999999999554 78899
Q ss_pred ecCCcEEEEEEcCCcccc------ccc----c----------ccCCCCCCCCCeeE---EEEeeCCCEEEEeec-CCeEE
Q 022184 82 TTNGGCKLFEVYGGATDI------NLL----A----------KKMPPLQDAGPQKC---LSFSVDGSRFAAGGV-DGHLR 137 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~------~~~----~----------~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~ 137 (301)
++||.|.|||+.-..... .+. . +......+...|.+ +.+..|...|++++. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999997544200 000 0 00111222334444 556678888999887 99999
Q ss_pred EEeCCCcceecc--------cccC---CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--eEEEEeecCCCC-eeEE
Q 022184 138 IMHWPSLRIILD--------EPKA---HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDEK-IELC 203 (301)
Q Consensus 138 v~d~~~~~~~~~--------~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~-v~~~ 203 (301)
|||++....... +..+ .-.+.++.....|.+|++.+.|+.|..|++..-. ++..+.++.... ...-
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence 999986554322 1122 1257788888888988888889999999998643 223333222111 1223
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCc
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~ 276 (301)
..+|++.+ +++++.|...++|.+.+.+. ...+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 324 ~lSpd~~~-----l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 324 ELSPDDCS-----LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ecCCCCce-----EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 46899998 89999999999999987654 44567888899999998842 34677799999999999654
No 172
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=2e-18 Score=139.66 Aligned_cols=247 Identities=12% Similarity=0.162 Sum_probs=157.1
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~- 83 (301)
+....++++|+ +++++++.. .++.+.+|+++..+ .+... .. . ...+.+..++|+|++++|++++.
T Consensus 35 ~~~~~l~~spd---~~~lyv~~~-----~~~~i~~~~~~~~g-~l~~~--~~--~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVISPD---KRHLYVGVR-----PEFRVLSYRIADDG-ALTFA--AE--S-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEECCC---CCEEEEEEC-----CCCcEEEEEECCCC-ceEEe--ee--e-cCCCCceEEEECCCCCEEEEEEcC
Confidence 34556778866 455555432 35677888887332 22110 01 1 12235678999999998888764
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCCcceecc-----c-ccCCcc
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILD-----E-PKAHKS 156 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~~~~~~~-----~-~~~~~~ 156 (301)
++.|.+|+++........ .....+.....+++++|+++++++++ .++.|.+||+++...+.. . ......
T Consensus 101 ~~~v~v~~~~~~g~~~~~----~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAP----IQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred CCeEEEEEECCCCCCCCc----eeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence 789999999743221111 11112334567789999999886655 569999999976332211 0 011235
Q ss_pred EEEEEecCCCcEEEEEeC-CCcEEEEeCCC--Cc--eEEEEeec-----CCCCeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184 157 VLDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALL 226 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (301)
...++|+|++++++++.. +++|.+|+++. ++ .+..+... .......+.++|+++++| ++...++.|
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly----v~~~~~~~I 252 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY----ACDRTASLI 252 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE----EecCCCCeE
Confidence 678999999999888775 89999999973 32 22232211 111233688999999732 233457899
Q ss_pred EEEEccCce----EeeeeeccCCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCC
Q 022184 227 AVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK 274 (301)
Q Consensus 227 ~~~d~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~ 274 (301)
.+|++.... .+..... ......+.++|+|++|+++.. ++.|.+|+++
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999986432 2222222 234568999999999998875 8899999875
No 173
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=5.3e-20 Score=137.35 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=168.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
..||+|.+|++| ...+|++. ..+.+.||...... ......++..|...|+.+.|+|..+.|++++.
T Consensus 10 ~~pitchAwn~d---rt~iAv~~------~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSD---RTQIAVSP------NNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCC---CceEEecc------CCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence 479999999998 67888855 23356777776554 23345678999999999999999999999999
Q ss_pred CCcEEEEEEc-CCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee----cccccCCccEE
Q 022184 84 NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL 158 (301)
Q Consensus 84 d~~i~~w~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~ 158 (301)
|..-++|... ++.-.. .+..+.++...+++.|+|.++.|++|+....|.||-++..+.- ..-....+.|+
T Consensus 76 drnayVw~~~~~~~Wkp-----tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKP-----TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred CCCccccccCCCCeecc-----ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 9999999984 333222 2334457789999999999999999999999999987654432 11223446799
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEeCCC------------------CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 159 DMDFSLDSEFLATTSTDGSARIWKTED------------------GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
+++|+|++-+|++|+.|+..+++..-- |+.+..+. ...+.+..+.|+|+|.. ++-.
T Consensus 151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~-----lawv 224 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNR-----LAWV 224 (361)
T ss_pred eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCE-----eeEe
Confidence 999999999999999999999997421 11122222 34557999999999998 7888
Q ss_pred CCcceEEEEEccCce-EeeeeeccCCCcEEEEEcCC
Q 022184 221 GDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD 255 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~ 255 (301)
+.|..+.+-|..... .+.......-+..++.|-.+
T Consensus 225 ~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 225 GHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred cCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 899999999977654 23333333456677776544
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=2.3e-19 Score=149.23 Aligned_cols=258 Identities=13% Similarity=0.102 Sum_probs=183.9
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC--eEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC 80 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~ 80 (301)
...+|+|+.|+|. ..+++|.|. ..|.+.+|+.......... ........|..++..+.|..+.. .+++
T Consensus 241 ~~s~v~~~~f~p~--~p~ll~gG~------y~GqV~lWD~~~~~~~~~s--~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 241 SPSEVTCLKFCPF--DPNLLAGGC------YNGQVVLWDLRKGSDTPPS--GLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred cCCceeEEEeccC--CcceEEeec------cCceEEEEEccCCCCCCCc--ccccccccCCcCeEEEEEeccCCCCceEE
Confidence 3578999999965 366777666 5566788887665543211 11223457899999999976544 4999
Q ss_pred EecCCcEEEEEEcCCccccccccccCC-----CCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCC---cc-----e
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMP-----PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS---LR-----I 146 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~---~~-----~ 146 (301)
++.||.|..|+++.-..+......... .......+++++|.+ +...+++|+++|.|.--.... .. .
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 999999999988765543322211111 112335789999998 677899999999998743322 21 1
Q ss_pred ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
......|.++|+.+.++|-+..++..+.|.+++||... ...++..+..+.. .+++++|||...-+ ++++..+|.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpav----F~~~d~~G~ 465 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAV----FATVDGDGN 465 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceE----EEEEcCCCc
Confidence 22344567899999999977655554459999999988 6666666655433 59999999998753 577888999
Q ss_pred EEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 226 LAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 226 i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
|.+||+.... ++..........+.+.|+++|+.|++|...|.+++|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9999987543 3444444456677888999999999999999999999963
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=4.8e-20 Score=141.19 Aligned_cols=213 Identities=10% Similarity=0.142 Sum_probs=160.7
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-CeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~ 81 (301)
..+||..++|+|. +...+|.|+ .|.++.||..-.+.... ........|.+|...|.-++|+|.. +.|+++
T Consensus 80 Ht~~vLDi~w~Pf--nD~vIASgS------eD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 80 HTAPVLDIDWCPF--NDCVIASGS------EDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred ccccccccccCcc--CCceeecCC------CCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 4688999999965 356777765 77888999986544322 1223355689999999999999954 478899
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCc-cEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDM 160 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~ 160 (301)
+.|.+|.+|++.+++. +..+.|...|.++.|+.||.+|++.+.|..|+|||.++++.+..-..|.+ .-..+
T Consensus 151 g~Dn~v~iWnv~tgea--------li~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEA--------LITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred cCCceEEEEeccCCce--------eeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 9999999999999986 33345889999999999999999999999999999999998877766664 44566
Q ss_pred EecCCCcEEEEEe---CCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 161 DFSLDSEFLATTS---TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 161 ~~~~~~~~l~~~~---~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
.|-.++..+.||- .+.++.+||...-+. +..........|.---|.+|.+.+| +.|-.|+.|+.|.+....+
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY----l~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY----LCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE----EEecCCcceEEEEecCCCc
Confidence 6888888444443 467899999765433 2222223344466667888888643 5677899999999876553
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=1.9e-18 Score=139.82 Aligned_cols=253 Identities=10% Similarity=0.105 Sum_probs=158.5
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQD 111 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~ 111 (301)
.++.|.+|+++.++ .+. ....+. +.+.+..++++|++++|++++ .++.|.+|+++.... ..... ....
T Consensus 10 ~~~~I~~~~~~~~g-~l~----~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~----~~~~ 78 (330)
T PRK11028 10 ESQQIHVWNLNHEG-ALT----LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAA----ESPL 78 (330)
T ss_pred CCCCEEEEEECCCC-cee----eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEee----eecC
Confidence 56778999996432 211 111222 345677899999999887664 478899999973211 11111 1112
Q ss_pred CCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcc-e---ecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCC
Q 022184 112 AGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR-I---ILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTED 185 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~-~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~ 185 (301)
......++|+|+++++++++. ++.|.+|++++.. . +... .+......++++|+++++++++ .++.|.+||+++
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 234678999999999888764 7899999986422 1 1111 2223567789999999886555 668999999976
Q ss_pred CceEE-----EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--ce--EeeeeeccC------CCcEEE
Q 022184 186 GVAWT-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVL 250 (301)
Q Consensus 186 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~--~~~~~~~~~------~~v~~~ 250 (301)
...+. ............++|+|+++++| ++...++.|.+||+.. ++ .+..+.... .....+
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly----v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY----CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEE----EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 33221 11112233467899999999732 3334489999999973 22 222222111 123468
Q ss_pred EEcCCCCEEEEeeC-CCcEEEEeCCCce-eeccccccccCccEEEEEEccCCC
Q 022184 251 SISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 251 ~~s~~~~~l~~~~~-d~~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.++|++++++++.. ++.|.+|++.... ................++|+|||+
T Consensus 234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence 89999999999854 6899999986432 111111101022456789999986
No 177
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=5.6e-19 Score=146.86 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=147.5
Q ss_pred cccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecCC-
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG- 134 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg- 134 (301)
..+...+.+.+|+|||+.|+..+. +..|++|++.+++... +.. ..+....+.|+|||+.|+.. +.+|
T Consensus 195 t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~------l~~--~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 195 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ------VAS--FPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE------ccC--CCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 345678999999999999987643 3578999987765311 111 12334568999999988765 3344
Q ss_pred -eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-Cc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184 135 -HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 135 -~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
.|++||+++++.. .+..+...+....|+|||+.|+..+.+ +. |.++|+.+++.. .+... ........|+|||+
T Consensus 267 ~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~SpDG~ 343 (429)
T PRK03629 267 LNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGK 343 (429)
T ss_pred cEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECCCCC
Confidence 5889999887654 344444567889999999988877754 44 555567666543 33322 22356789999999
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc---EEEEeCCCceeecccccccc
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLHL 287 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~i~~~~~~~~~~~~~~~~~ 287 (301)
.+++ .........|.+||+.+++.. .+.. ........|+|||++|+.++.++. +.++++..... +.+ ..|
T Consensus 344 ~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l-~~~- 416 (429)
T PRK03629 344 FMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARL-PAT- 416 (429)
T ss_pred EEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EEC-ccC-
Confidence 7321 122223456889999887643 2322 223346789999999999988764 67778754443 334 346
Q ss_pred CccEEEEEEcc
Q 022184 288 GTSIALVEFCP 298 (301)
Q Consensus 288 ~~~v~~~~~sp 298 (301)
.+.+...+|+|
T Consensus 417 ~~~~~~p~Wsp 427 (429)
T PRK03629 417 DGQVKFPAWSP 427 (429)
T ss_pred CCCcCCcccCC
Confidence 67889999998
No 178
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.1e-19 Score=134.30 Aligned_cols=249 Identities=15% Similarity=0.193 Sum_probs=161.7
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCC-CCeEEEEecC
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTN 84 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d 84 (301)
.+..++|++. ..-+|+++ .|..+++|+-........ -......|++++|-|. +..|+.+++.
T Consensus 100 dlr~~aWhqH---~~~fava~------nddvVriy~ksst~pt~L--------ks~sQrnvtclawRPlsaselavgCr~ 162 (445)
T KOG2139|consen 100 DLRGVAWHQH---IIAFAVAT------NDDVVRIYDKSSTCPTKL--------KSVSQRNVTCLAWRPLSASELAVGCRA 162 (445)
T ss_pred ceeeEeechh---hhhhhhhc------cCcEEEEeccCCCCCcee--------cchhhcceeEEEeccCCcceeeeeecc
Confidence 3567899975 45555554 566678876544221111 1123567999999994 4578888887
Q ss_pred CcEEEEEEcCCcccccc----ccccCCCC--CCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceecccccCCccE
Q 022184 85 GGCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV 157 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~i 157 (301)
| |.+|.........+. .....+.+ ..+.+|+++.|++||..+++++. |..|.|||..++..+.-.....+.+
T Consensus 163 g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~ 241 (445)
T KOG2139|consen 163 G-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGF 241 (445)
T ss_pred e-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCce
Confidence 7 999998644332221 11112222 23478999999999999999875 6789999999988765554556789
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc---
Q 022184 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--- 234 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--- 234 (301)
.-+.|+||+.+|+.+.-|+..++|+.....-........ +.|....|+|+|+.+++ +.+....++-......
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf----~~sgsp~lysl~f~~~~~~ 316 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLF----ACSGSPRLYSLTFDGEDSV 316 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEE----EEcCCceEEEEeecCCCcc
Confidence 999999999999999999999999665443333333333 37999999999997532 2222222222111100
Q ss_pred -------eE---eeee---------eccCCCcEEEEEcCCCCEEEEeeCCC--------cEEEEeCCCce
Q 022184 235 -------NK---IGHK---------RLLRKPASVLSISLDGKYLAMGSKDG--------DICVVDVKKME 277 (301)
Q Consensus 235 -------~~---~~~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~--------~i~i~~~~~~~ 277 (301)
+. +..+ ....+.+.+++|+|.|.+||+.-..+ .|.+||.+...
T Consensus 317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 00 0000 01135788999999999999975433 36778876543
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.85 E-value=9.9e-19 Score=132.98 Aligned_cols=224 Identities=18% Similarity=0.191 Sum_probs=167.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--CeEEEEe
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH 140 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~v~d 140 (301)
...+..+.|+.+...|..|+.|| .++|+.+.... ..........|..+-|+. .++|..+.+ ..+++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-------hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEE
Confidence 45577777999999999999999 88998876543 111112334556666754 466665543 4589999
Q ss_pred CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
++....+..+. ...+|.++.++. +.|+++-.+ .|.|||+++.+.++++......+-.-++++|+...-+++ .-..
T Consensus 75 ~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s 149 (391)
T KOG2110|consen 75 FKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS 149 (391)
T ss_pred cccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence 98877776653 346899999874 456666554 499999999999998875433333345555554422221 1334
Q ss_pred CCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc-EEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
...|.|.+||..+-+++..+..|++++.+++|+++|.+||+++..|+ |+||.+.+++.+..++++-....|.+++|+||
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 45789999999999999999999999999999999999999999987 78999999999999987764667999999999
Q ss_pred CC
Q 022184 300 QR 301 (301)
Q Consensus 300 g~ 301 (301)
++
T Consensus 230 s~ 231 (391)
T KOG2110|consen 230 SQ 231 (391)
T ss_pred CC
Confidence 75
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=133.69 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=122.1
Q ss_pred CCeeEEEEee-CCC--EEEEeecCCeEEEEeCCCccee----------cccccCCccEEEEEecCCCcEEEEEeCCCcEE
Q 022184 113 GPQKCLSFSV-DGS--RFAAGGVDGHLRIMHWPSLRII----------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179 (301)
Q Consensus 113 ~~v~~~~~s~-~~~--~l~~~~~dg~i~v~d~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 179 (301)
+.+.+..+.. +++ ++++|.++|.+.+||+.++..+ .....|..++.++.+.+.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3455555433 233 3567888999999999987433 33345667999999988666667788888899
Q ss_pred EEeCCCC--ce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC
Q 022184 180 IWKTEDG--VA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (301)
Q Consensus 180 i~d~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 255 (301)
.|++... .. .......+. .+..+..-||++. +++++.|++|++|..++.+++..++.|...|.+++|+|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknp-Gv~gvrIRpD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNP-GVSGVRIRPDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred eeeeccccCcccccceEEecCC-CccceEEccCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 9988643 21 112222333 3889999999997 899999999999999999999999999999999999999
Q ss_pred CCEEEEeeCCCcEEEEeC
Q 022184 256 GKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 256 ~~~l~~~~~d~~i~i~~~ 273 (301)
...+|+++.|++|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.1e-19 Score=139.66 Aligned_cols=229 Identities=14% Similarity=0.176 Sum_probs=160.9
Q ss_pred CCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccc--cccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
..+|.++.|.++.. .+++|+.|..|++|.+...+.... ...-......|...|+++.|+|+|.+|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56799999999776 999999999999999986654331 111112233578999999999999999999999999999
Q ss_pred eCC--------C--------cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184 140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (301)
Q Consensus 140 d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 203 (301)
... + ....+.+..|...|..++|+|++.++++++.|..+++||+..|.....+..|. ..+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~-~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE-HYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc-ccccee
Confidence 765 2 11223445677899999999999999999999999999999999988887654 469999
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-------------------cc----CCCcEEEEEcCCCCEEE
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LL----RKPASVLSISLDGKYLA 260 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------------~~----~~~v~~~~~s~~~~~l~ 260 (301)
+|.|-+++ +++-+.|...+.+.+...+.+.... .| ..-...++|+|||.+|+
T Consensus 172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999987 5666666666666554322211110 01 12345689999999998
Q ss_pred EeeC----C-----CcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 261 MGSK----D-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 261 ~~~~----d-----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
+... . +..++|+-...+....-.... ..++..+.|+|
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~p 292 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSP 292 (434)
T ss_pred cccceeeeCCceeeceeEeeccccccCceeecCCC-CcceEEEEeee
Confidence 7642 1 234555544332221111233 55666676665
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=7.3e-20 Score=141.27 Aligned_cols=195 Identities=20% Similarity=0.208 Sum_probs=150.6
Q ss_pred eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (301)
Q Consensus 67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 146 (301)
..++|+++|..+++++.||++|+|+...... ......|+..|.++.|+|||++|++.+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t-------~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT-------ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh-------hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 5789999999999999999999999776654 23444588999999999999999999999 899999999976
Q ss_pred ecccccCC--ccEEEEEecCCC---c--EEEEEeCCCcEEEEeCCCCce---E--EEEeecCCCCeeEEEEccCCCcceE
Q 022184 147 ILDEPKAH--KSVLDMDFSLDS---E--FLATTSTDGSARIWKTEDGVA---W--TFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 147 ~~~~~~~~--~~i~~~~~~~~~---~--~l~~~~~d~~i~i~d~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+....... .....+.|+.|+ . .++.....+.|+.||+...+. + .+.... ...|++++.+++|++
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf--- 295 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKF--- 295 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcE---
Confidence 65554222 256677888776 3 233334556677777643222 1 111111 235999999999998
Q ss_pred EEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
++.++.+|.|.+++..+.+.+... +.|...|+.+.|+||.+++++.+.+....+..+.-
T Consensus 296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 788999999999999988776543 56788999999999999999999999988887754
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=1.7e-17 Score=138.80 Aligned_cols=263 Identities=21% Similarity=0.350 Sum_probs=193.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC-CcceEEEE-CCCCC-eEEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC 80 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~~ 80 (301)
...+.++.+.+. ...++.++ .++.+.+|.+....... ..+..+. ..+..+.+ ++++. .++.
T Consensus 65 ~~~i~~~~~~~~---~~~~~~~~------~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 65 EDSITSIAFSPD---GELLLSGS------SDGTIKLWDLDNGEKLI-------KSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred cceEEEEEECCC---CcEEEEec------CCCcEEEEEcCCCceeE-------EEEeccCCCceeeEEEECCCcceEEec
Confidence 356777777755 34444433 56777888887654111 1233322 46777777 88887 5555
Q ss_pred Eec-CCcEEEEEEcC-CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceecccccCCccE
Q 022184 81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV 157 (301)
Q Consensus 81 ~~~-d~~i~~w~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~i 157 (301)
.+. |+.+.+|+... .... .....|...+..++|+|++..+++++. ++.+++|+...+..+..+..|...+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLI-------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred cCCCCccEEEEEecCCCeEE-------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 444 89999999987 3221 222346678899999999998888885 9999999999877777777788899
Q ss_pred EEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEE-EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184 158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 158 ~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 235 (301)
.+++|+|++. .+++++.|+.+++||...+.... .+..+.. .. ...|+|++.. +++++.++.+++||.+...
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence 9999999998 55555899999999998777777 4554443 22 2289999954 5688999999999998766
Q ss_pred E-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc-ccccCccEEEEEEc
Q 022184 236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFC 297 (301)
Q Consensus 236 ~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~s 297 (301)
. ......|...+.++.|+|++..+++++.|+.+.+|+..+........ ..| ...+..+.|.
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 337 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFS 337 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEEC
Confidence 4 33345667899999999988888889999889999998876655543 356 5578888883
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=157.05 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=177.4
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
...+.+|..+|+|+.|...|.++++++.|..++||..++..+.. ..-.|.+.++.++.+.+..++++++.|..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-------s~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-------SCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-------cCCCCccccchhccchhhhhhhhcccCce
Confidence 44578999999999999999999999999999999988877622 22347789999999999999999999999
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc--------------eEEEEeec------
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--------------AWTFLTRN------ 195 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~------ 195 (301)
|++|.+..+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.- ....+...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f 331 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRF 331 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccc
Confidence 9999999999999999999999999999954 77899999999987111 00111000
Q ss_pred ---C------CCCeeEEEEccCCCcceE-------EEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC-CCCE
Q 022184 196 ---S------DEKIELCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKY 258 (301)
Q Consensus 196 ---~------~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 258 (301)
. ......++|....-. |. ...+++-.+..+++|++.++.....+.+|...+..+.++| +.+.
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred ccccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 0 000111112111110 00 0023344567788999999998888899999999999999 5566
Q ss_pred EEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 259 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
..+++.||...|||+-.+.+++....+| +.+..-+||+||+
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGT 451 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCc
Confidence 7788999999999999988777766565 6677888999984
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2e-18 Score=124.43 Aligned_cols=221 Identities=15% Similarity=0.194 Sum_probs=160.4
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccc---cccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLL---AKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
...|.+-+|+|.+++|+++..+|.|.++.+.+-....... ........|.++++.++|. ..+|++|+ ||.|+-|
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEe
Confidence 3457788899999999999999999999987533211111 1112224588999999998 34677777 6999999
Q ss_pred eCCCcce------ec--ccccCC-----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE-
Q 022184 140 HWPSLRI------IL--DEPKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF- 205 (301)
Q Consensus 140 d~~~~~~------~~--~~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~- 205 (301)
.++.... .. +.+.+. ..|+++-..|..+-+++++.|+.++-||+++|+....+.+|.+. +.++.-
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R 165 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGR 165 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeec
Confidence 8864322 11 111122 26889999998888888889999999999999999999988764 888877
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCC----------CcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK----------PASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+.+++ ++++++||++++||.++++.+..+...+. .|-++ .-+..+|++|+. ..+.+|++++
T Consensus 166 ~~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrs 236 (325)
T KOG0649|consen 166 NANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRS 236 (325)
T ss_pred ccCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-CceeEEeccC
Confidence 55555 69999999999999999988766644332 23334 345668888865 5799999999
Q ss_pred ceeeccccccccCccEEEEEEccC
Q 022184 276 MEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 276 ~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+....+.- ..++..+.|-.|
T Consensus 237 se~t~vfpi---pa~v~~v~F~~d 257 (325)
T KOG0649|consen 237 SESTCVFPI---PARVHLVDFVDD 257 (325)
T ss_pred CCceEEEec---ccceeEeeeecc
Confidence 887776631 455666666443
No 186
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.4e-19 Score=142.26 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=159.5
Q ss_pred ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
.-.|...|..+.|+..|+||++...+ ..|.|+++...... .......+.+.++.|+|...+|++++ ...
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-------~PF~kskG~vq~v~FHPs~p~lfVaT-q~~ 588 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-------SPFRKSKGLVQRVKFHPSKPYLFVAT-QRS 588 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-------CchhhcCCceeEEEecCCCceEEEEe-ccc
Confidence 34688899999999999999988654 57889998776541 12223457899999999888888887 567
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
|++||+..++.+.++......|..++.+|.|..|+.++.|+.+..+|+.-... ...+. +|...++.++|++.-..
T Consensus 589 vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va~H~ryPL--- 664 (733)
T KOG0650|consen 589 VRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVAFHKRYPL--- 664 (733)
T ss_pred eEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhhhccccce---
Confidence 99999998888888887778999999999999999999999999999986544 44444 45567999999998775
Q ss_pred EEEEEeCCcceEEEEEcc------Cc---eEeeeeeccCC----CcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 215 FCTVQRGDKALLAVYDIS------TW---NKIGHKRLLRK----PASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~------~~---~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
+++++.|+.+.|+.-. .. -++..+.+|.. .|..+.|+|...+|++++.||+|++|
T Consensus 665 --fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 665 --FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred --eeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6888999999998532 11 12445566654 48888999999999999999999998
No 187
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=3.3e-18 Score=143.01 Aligned_cols=236 Identities=12% Similarity=0.084 Sum_probs=156.1
Q ss_pred eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCCCCC
Q 022184 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (301)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 113 (301)
-+||.++.++... ..+..|...+.+.+|+|||+.|+..+. +..|++||+.+++... + ....+
T Consensus 182 ~~l~~~d~dg~~~-------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~------l--~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGANV-------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL------V--GNFPG 246 (435)
T ss_pred eEEEEECCCCCCc-------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE------e--ecCCC
Confidence 3566666554322 234567788999999999999988764 4689999998765411 1 11334
Q ss_pred CeeEEEEeeCCCEEEE-eecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCc
Q 022184 114 PQKCLSFSVDGSRFAA-GGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGV 187 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~ 187 (301)
.+...+|+|||+.|+. .+.++ .|++||+.+++. ..+..+........|+|||+.|+..+. ++ .|.++|+..++
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence 5678899999998764 44454 477788887765 345445555677899999998887764 33 68888887665
Q ss_pred eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC--
Q 022184 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-- 265 (301)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 265 (301)
.. .+... ...+....|+|+|+.+++ ......+..|.+||+.++... .+. ....+..+.|+|||+.|+..+.+
T Consensus 326 ~~-~lt~~-~~~~~~~~~SpdG~~ia~--~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 326 PR-RISFG-GGRYSTPVWSPRGDLIAF--TKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred eE-EeecC-CCcccCeEECCCCCEEEE--EEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCC
Confidence 43 33322 234667889999997422 111223357889998655432 232 22346778999999998876543
Q ss_pred ----CcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 266 ----GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 266 ----~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
..++++++..+.... +. . .+.+...+|+|
T Consensus 400 ~~~~~~L~~~dl~g~~~~~-l~--~-~~~~~~p~Wsp 432 (435)
T PRK05137 400 SGGAPKLYTVDLTGRNERE-VP--T-PGDASDPAWSP 432 (435)
T ss_pred CCCcceEEEEECCCCceEE-cc--C-CCCccCcccCC
Confidence 258888887765543 32 2 34577888887
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=4.6e-19 Score=141.04 Aligned_cols=191 Identities=17% Similarity=0.207 Sum_probs=145.8
Q ss_pred CCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (301)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (301)
....+.....|.+.+.+-.|+|+|.-|++++.||.|++|...+.-. ....+...+|+|++|.|+.+.++.+.
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--------Stl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--------STVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH--------HHHhhcCceeEEEEECCCCCceEEec
Confidence 3445667889999999999999999999999999999999765432 11112457899999999888777665
Q ss_pred cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
.+.+.+=.+.....+.+...|.+-|.++.|+|..+.+++|+.|-..++||-. |..+..-. .++.+|++++|.|+..+
T Consensus 165 -g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~npd~~~ 241 (737)
T KOG1524|consen 165 -GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNPEKDY 241 (737)
T ss_pred -CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeeccccce
Confidence 4567777777666677788999999999999999999999999999999974 44444333 34668999999999332
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
+.++ -.+++ .-+...+.|..++||+||..+++|+..|.+.+=
T Consensus 242 ------~v~S-~nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 242 ------LLWS-YNTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ------eeee-eeeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 2222 11222 122334789999999999999999998876653
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.8e-19 Score=132.52 Aligned_cols=224 Identities=14% Similarity=0.213 Sum_probs=152.6
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
+.+.+++|++.... . ...+++|...++.++|.. ....+.+++.||+|++||++......++.....
T Consensus 48 Sngsv~lyd~~tg~--~------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~---- 115 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQ--L------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ---- 115 (376)
T ss_pred cCCeEEEEeccchh--h------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC----
Confidence 55677998876521 1 345788899999999976 456788999999999999998766444332211
Q ss_pred CCCCeeEEEEeeCCCEEEEeec----CCeEEEEeCCCcce-ecc-cccCCccEEEEEecC-CCcEEEEEeCCCcEEEEeC
Q 022184 111 DAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILD-EPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKT 183 (301)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~ 183 (301)
...+..+++.+..++.++.|.+ +-.|.+||++..+. +.. ...|.+.|+++.|+| +.++|++|+.||-|.+||+
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 1245677777777888888864 67899999987765 433 346778999999999 5679999999999999999
Q ss_pred CCCce----EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce------------------------
Q 022184 184 EDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------------ 235 (301)
Q Consensus 184 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------------ 235 (301)
+.... +..+. +...|.++.|..++-.- +..-+......+|+++.+.
T Consensus 196 ~~d~EeDaL~~viN--~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 196 KKDNEEDALLHVIN--HGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred CCCcchhhHHHhhc--ccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 75422 12222 23346777777666211 2222334445555543211
Q ss_pred -------------------------------------Eeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 236 -------------------------------------KIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 236 -------------------------------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.+..+.+ |..-|+++.|...+.++++|++||.+.+|..+
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 1111222 23446677777778899999999999999954
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2.8e-19 Score=142.26 Aligned_cols=225 Identities=16% Similarity=0.189 Sum_probs=154.3
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEE-EcCCcccc-ccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE-VYGGATDI-NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~-~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 138 (301)
.|...|.++.|+.+...+.++ .|..+.+|. +....... ..+....+...|..+ .+..=-.....++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEE
Confidence 456667899998776655555 555555554 43332211 111111111112110 00000112357888899999999
Q ss_pred EeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
.+ +.++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- +|-...++. ....+|+|++|.|+.+.+ +.
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~ 162 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEESIRCARWAPNSNSI----VF 162 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh-hcCceeEEEEECCCCCce----EE
Confidence 87 566777778889999999999999999999999999999984 444333333 234579999999999872 22
Q ss_pred EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 219 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
+..+.+.+=.+.....+-..+.|++-|.++.|++...++++|++|-+.+|||.....+... ..| ..+|++++|+|
T Consensus 163 --c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~np 237 (737)
T KOG1524|consen 163 --CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNP 237 (737)
T ss_pred --ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeecc
Confidence 2345677767766666667889999999999999999999999999999999865444433 455 67777777777
Q ss_pred C
Q 022184 299 T 299 (301)
Q Consensus 299 d 299 (301)
|
T Consensus 238 d 238 (737)
T KOG1524|consen 238 E 238 (737)
T ss_pred c
Confidence 6
No 191
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=3.6e-18 Score=142.20 Aligned_cols=238 Identities=17% Similarity=0.172 Sum_probs=149.3
Q ss_pred eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCC
Q 022184 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAG 113 (301)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 113 (301)
-+||.++..+... ..+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... + . ...+
T Consensus 176 ~~L~~~D~dG~~~-------~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-----~--~~~g 240 (427)
T PRK02889 176 YQLQISDADGQNA-------QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-----A--NFKG 240 (427)
T ss_pred cEEEEECCCCCCc-------eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-----e--cCCC
Confidence 3667666654321 1234567789999999999999877643 359999998775411 1 1 1223
Q ss_pred CeeEEEEeeCCCEEEE-eecCCeEEEEe--CCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeC--CCCc
Q 022184 114 PQKCLSFSVDGSRFAA-GGVDGHLRIMH--WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGV 187 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~-~~~dg~i~v~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~--~~~~ 187 (301)
.....+|+|||+.|+. .+.++...+|. +..+. ...+..+........|+|||+.|+..+. ++...+|.+ .+++
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 4567899999998864 56677666654 44444 3444444445567889999998886664 456666654 4444
Q ss_pred eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC-
Q 022184 188 AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG- 266 (301)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~- 266 (301)
. ..+... .......+|+|+|+++++ ....+....|.+||+.+++... +.. ......+.|+|||++|+.++.++
T Consensus 320 ~-~~lt~~-g~~~~~~~~SpDG~~Ia~--~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 320 A-QRVTFT-GSYNTSPRISPDGKLLAY--ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred e-EEEecC-CCCcCceEECCCCCEEEE--EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCC
Confidence 3 222222 222446789999997321 1111223479999998876543 222 22346789999999998887554
Q ss_pred --cEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 267 --DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 267 --~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+.+.++. +.....+ ..+ .+.+...+|+|-
T Consensus 394 ~~~l~~~~~~-g~~~~~l-~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 394 RSVLAAVSSD-GRIKQRL-SVQ-GGDVREPSWGPF 425 (427)
T ss_pred CEEEEEEECC-CCceEEe-ecC-CCCCCCCccCCC
Confidence 36666664 4444433 234 567888899883
No 192
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=8.4e-18 Score=140.43 Aligned_cols=222 Identities=18% Similarity=0.164 Sum_probs=146.4
Q ss_pred ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCC
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG 134 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg 134 (301)
+..+...+.+.+|+|||+.|+..+.+ ..|++|++.+++... .. ...+....++|+|||+.|+. .+.+|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------l~--~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------VA--SFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE------ec--cCCCCccCceECCCCCEEEEEEeCCC
Confidence 44567789999999999999987643 469999997765311 11 11233457899999998764 44454
Q ss_pred --eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184 135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (301)
Q Consensus 135 --~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (301)
.|++||+.+++. ..+..+......++|+|||+.|+..+. ++. |.++|+.+++... +... .......+|+|+|
T Consensus 271 ~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG 347 (433)
T PRK04922 271 NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG 347 (433)
T ss_pred CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence 699999988765 344444444567899999998887763 444 6667776665433 3222 2234578999999
Q ss_pred CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccc
Q 022184 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~ 286 (301)
+++++ ....+....|.+||+.+++.. .+. +......+.|+|||++|+..+.+ +.|.++++..... ..+ ..+
T Consensus 348 ~~Ia~--~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l-~~~ 421 (433)
T PRK04922 348 KKIAM--VHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRL-VSA 421 (433)
T ss_pred CEEEE--EECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEc-ccC
Confidence 97322 111122347999999887654 232 22234567999999988877653 4688888865443 333 233
Q ss_pred cCccEEEEEEcc
Q 022184 287 LGTSIALVEFCP 298 (301)
Q Consensus 287 ~~~~v~~~~~sp 298 (301)
.+.+..++|+|
T Consensus 422 -~g~~~~p~wsp 432 (433)
T PRK04922 422 -DGEVREPAWSP 432 (433)
T ss_pred -CCCCCCCccCC
Confidence 46678888987
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.2e-17 Score=128.06 Aligned_cols=224 Identities=13% Similarity=0.115 Sum_probs=167.4
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecC--CeEE
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVD--GHLR 137 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d--g~i~ 137 (301)
....+|..++.. ...|++|-.+|.+++|..+.+..... .+..+....++..+.-++. ...+++|+.. ..+.
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccc----cceeeecCCceeeeccCCCCCceEecCchhccccee
Confidence 335566666553 33677888899999999986653211 1112223355666776774 4456678888 8899
Q ss_pred EEeCCCcceecccccCCc---------cEEEEEecCC--CcEEEEEeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEE
Q 022184 138 IMHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRF 205 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~~~---------~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~ 205 (301)
+||+.+.+.+..-..... .++++.|-+. ...||+++.-+.+++||.+.+. ++..+... ..+++++..
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGL 255 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc-cCcceeeee
Confidence 999998866544332221 3667888886 7899999999999999998764 45555443 457999999
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceEeee-eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccc
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR 284 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~ 284 (301)
.|+++. ++++...+.+..||+++++.... +.+..+.++++..+|..+++++++-|..|+|+|+++.+++...+.
T Consensus 256 ~p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 256 TPSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred cCCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 999997 78889999999999999988766 778889999999999999999999999999999999777765432
Q ss_pred cccCccEEEEEEccC
Q 022184 285 LHLGTSIALVEFCPT 299 (301)
Q Consensus 285 ~~~~~~v~~~~~spd 299 (301)
.+..+.+-+.++
T Consensus 331 ---Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 ---KSRLTFILLRDD 342 (412)
T ss_pred ---hccccEEEecCC
Confidence 455666666543
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=2e-18 Score=140.99 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=176.6
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
+..|+|++|+.| +..+|.|+ .|..+.+|.-..++. + --.|.+.|.||.|+|-...|++++-
T Consensus 53 KDtVycVAys~d---GkrFASG~------aDK~VI~W~~klEG~-L---------kYSH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 53 KDTVYCVAYAKD---GKRFASGS------ADKSVIIWTSKLEGI-L---------KYSHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred cceEEEEEEccC---CceeccCC------CceeEEEecccccce-e---------eeccCCeeeEeecCchHHHhhhcch
Confidence 567999999988 67888877 556667776544331 1 1368999999999999999999876
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc---CCccEEEE
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK---AHKSVLDM 160 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~i~~~ 160 (301)
.. .-+|..+.... ........+.+++|..||++++.|-.+|+|.+-+- ++++...+.. ..++|+++
T Consensus 114 sd-FglWS~~qK~V---------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 114 SD-FGLWSPEQKSV---------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred hh-ccccChhhhhH---------HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEE
Confidence 55 67888765432 11123467899999999999999999999999763 4444333332 44689999
Q ss_pred EecCCC-----cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184 161 DFSLDS-----EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 161 ~~~~~~-----~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 235 (301)
+|+|.. ..+++.....++..|.+. |+.+..-.. -+....|+.+.++|.+ +..|+.|+.+++|-. .|-
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf~NGEy-----~LiGGsdk~L~~fTR-~Gv 254 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRA-LNFDPCCISYFTNGEY-----ILLGGSDKQLSLFTR-DGV 254 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEec-ceeeccccc-CCCCchhheeccCCcE-----EEEccCCCceEEEee-cCe
Confidence 999953 367888888888888874 443332111 1223678999999998 788999999999974 455
Q ss_pred EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
.+.+.......|+.++..|++++++.|+.||+|..|++-.
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 6666666788999999999999999999999999999753
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=3.6e-19 Score=142.15 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=172.0
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc-cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
..++..|.+.|+.++|+|....|++++.|++|.+|+++..... .....+......|.++|.|+++.+++..+++|+-||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 3467889999999999999999999999999999999442211 111222334456889999999999999999999999
Q ss_pred eEEEEeCCCcc----------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC-CCCeeEE
Q 022184 135 HLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELC 203 (301)
Q Consensus 135 ~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~ 203 (301)
+|+.|++.... ....+.+|.+.++.+++++....|++++.||++++|+.....+ ..+.... .+...++
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 99999765221 1234567888999999999988999999999999999876665 3332221 1224455
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-------CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
.+-...... .++...-+.-.++++.....+..+... ...+..+.++|.+.+.+++..|+.|+++|..++
T Consensus 446 d~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 446 DRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred eeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 554433211 222222233334444443333222211 134677889999999999999999999999999
Q ss_pred eeeccccccccCccEEEEEEccCC
Q 022184 277 EINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 277 ~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+++... ..| ...++++++.|+|
T Consensus 522 ~~l~s~-~a~-~~svtslai~~ng 543 (577)
T KOG0642|consen 522 KILHSM-VAH-KDSVTSLAIDPNG 543 (577)
T ss_pred ccchhe-eec-cceecceeecCCC
Confidence 999887 578 8899999999987
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=5.7e-17 Score=135.60 Aligned_cols=229 Identities=24% Similarity=0.360 Sum_probs=180.5
Q ss_pred cccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCc-cccccccccCCCCCCCCCeeEEEE-eeCCC-EEEEeec-C
Q 022184 58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D 133 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~-~l~~~~~-d 133 (301)
.+..|...+..+.+.+.+..++.++.|+.+.+|+..... ....+... +...+..+.+ ++++. .++..+. |
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL------HDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc------CCCceeeEEEECCCcceEEeccCCCC
Confidence 456889999999999999999999999999999998775 21111110 1135666666 77777 5555444 8
Q ss_pred CeEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 134 g~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+.+.+|+... ......+..|...|..++|+|++..+++++. |+.+++|++..+..+..+..+ ...+.+++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCcce
Confidence 9999999987 6666778888889999999999998888885 999999999988887777764 457999999999883
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEee-eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee-eccccccccCc
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT 289 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~-~~~~~~~~~~~ 289 (301)
. +++.+.|+.|.+||...+.... .+..|.... ...|+|++.++++++.|+.+++|++..... .... ..| ..
T Consensus 213 ~----~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~ 285 (466)
T COG2319 213 L----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS 285 (466)
T ss_pred E----EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence 1 3445899999999988777766 566666654 338999999999999999999999987664 3333 567 88
Q ss_pred cEEEEEEccCC
Q 022184 290 SIALVEFCPTQ 300 (301)
Q Consensus 290 ~v~~~~~spdg 300 (301)
.+.++.|+|++
T Consensus 286 ~v~~~~~~~~~ 296 (466)
T COG2319 286 SVLSVAFSPDG 296 (466)
T ss_pred cEEEEEECCCC
Confidence 99999999965
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=8.6e-18 Score=133.82 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=132.8
Q ss_pred CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCC-------
Q 022184 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS------- 143 (301)
Q Consensus 72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~------- 143 (301)
.|.+--++.+-.-|.+++.|....+. .++... ........++++.|-| +...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNE--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHH-HHhhhh--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 34566777887788899998876332 121111 1112347899999999 556677778899999997521
Q ss_pred -------cc--------------eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184 144 -------LR--------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (301)
Q Consensus 144 -------~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (301)
+. ++....-..+.|..++|+|||++||+.+.||.+||||..+.+.+..++.-.. ...|
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLC 337 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLC 337 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEE
Confidence 00 0111111234788999999999999999999999999999888776665444 4899
Q ss_pred EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcC
Q 022184 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL 254 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 254 (301)
++|||||++ ++++++|-.|.||.+...+.+..-.+|+..|+.++|+|
T Consensus 338 vcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 338 VCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEcCCccE-----EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999998 89999999999999999999998999999999999983
No 198
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=7.1e-20 Score=143.02 Aligned_cols=218 Identities=11% Similarity=0.138 Sum_probs=179.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.-....+.++.+|++++.++..|.+-.+|..+..... .+.....|..+.|-.+.+++|++- ...++||| .
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~--------Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~ 198 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF--------EINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-N 198 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee--------eeehhhhhhhhhhhcchHHHHhhh-hceEEEec-C
Confidence 4457789999999999999999999999999887622 223346788999988888777765 67899999 4
Q ss_pred CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
.|..+.-+. ...+|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+ .+..+.-+|-... +-.|..
T Consensus 199 ~GtElHClk-~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaV-----ih~Ghs 271 (545)
T KOG1272|consen 199 NGTELHCLK-RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAV-----IHLGHS 271 (545)
T ss_pred CCcEEeehh-hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccce-----EEEcCC
Confidence 565555554 346889999999999999999999999999999999988876543 5777888887664 688999
Q ss_pred cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
.|+|.+|.....+++..+..|.++|.++++.++|+|+++.+.|..++|||++....+......| +...++||.-|
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg 346 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG 346 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence 9999999999999998899999999999999999999999999999999999988776664433 55666666543
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=9.3e-18 Score=125.51 Aligned_cols=206 Identities=11% Similarity=0.064 Sum_probs=162.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
..+|+|.+|++|+..+|.+.....|.||...+...-.. .-....|...|++++|+|..+.|++++.|..-++|...
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~----~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP----AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee----ceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 67899999999999999999999999999987663111 11223477899999999999999999999999999984
Q ss_pred Cc---ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE---EEEeecCCCCeeEEEEccCCCcceEEE
Q 022184 143 SL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFC 216 (301)
Q Consensus 143 ~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (301)
.+ ++...+..+....+++.|+|.++.||+++....|.||-.+..+.- ..++.+....|.+++|+|++-.
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL----- 160 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL----- 160 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce-----
Confidence 32 344455667788999999999999999999999999987655432 1233344556999999999886
Q ss_pred EEEeCCcceEEEEEccC------------------ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 217 TVQRGDKALLAVYDIST------------------WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 217 ~~~~~~~~~i~~~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
+++++.|+..++|..-- ++.+.+.....+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 78999999999986421 11223333445789999999999999999999999999987664
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=7.3e-17 Score=134.45 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=168.2
Q ss_pred ceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (301)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 114 (301)
.+.+|++..... |.. .+ .-...|+++.|+| +..+++.|..+|.|.+||+..+........ ....-.|..+
T Consensus 223 ~~~vW~~~~p~~-----Pe~--~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l-s~~~~sh~~~ 293 (555)
T KOG1587|consen 223 VLLVWSLKNPNT-----PEL--VL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL-SALEVSHSEP 293 (555)
T ss_pred eEEEEecCCCCC-----ceE--EE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc-ccccccCCcC
Confidence 567777765421 111 12 2367899999999 455777788899999999988765321111 1233457889
Q ss_pred eeEEEEeeCC--CEEEEeecCCeEEEEeCCCccee-----cccc-------cCCccEEEEEecC-CCcEEEEEeCCCcEE
Q 022184 115 QKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRII-----LDEP-------KAHKSVLDMDFSL-DSEFLATTSTDGSAR 179 (301)
Q Consensus 115 v~~~~~s~~~--~~l~~~~~dg~i~v~d~~~~~~~-----~~~~-------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~ 179 (301)
+..+.|-.+. .-+++++.||.|..|+++.-... .... .....+++++|.+ +...|+.|+.+|.|.
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~ 373 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY 373 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence 9999997743 44999999999999987543221 0111 1123688999988 556899999999987
Q ss_pred EEeCC---CCc----eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccCCCcEEEE
Q 022184 180 IWKTE---DGV----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLS 251 (301)
Q Consensus 180 i~d~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~v~~~~ 251 (301)
--+-. .+. ........+.++|+.+.++|=+..+| .+++ |-++++|... ...++..+..+...+++++
T Consensus 374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f----ls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF----LSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEeccCCcccccccccccccccccCcceEeeecCCCcccee----eeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 73322 222 01111223456899999999988743 2333 8899999988 6666766777777799999
Q ss_pred EcCCC-CEEEEeeCCCcEEEEeCCCce--eeccccccccCccEEEEEEccCCC
Q 022184 252 ISLDG-KYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 252 ~s~~~-~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
|||-. ..++++..||.|.+||+.... +.... ..+ ....+.+.|+++|+
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~~-~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KVC-SPALTRVRWSPNGK 499 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhccccCCcccc-ccc-ccccceeecCCCCc
Confidence 99965 577788889999999997543 22222 222 45566777777664
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=138.27 Aligned_cols=218 Identities=10% Similarity=0.042 Sum_probs=158.4
Q ss_pred ceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEee
Q 022184 54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGG 131 (301)
Q Consensus 54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~ 131 (301)
..+.++.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+... .....|...|.+++|-| +.+.+++|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh------sI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH------SISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee------eeecccccceeEEeeeccCCCeEEEecc
Confidence 3466799999999999999999999999999999999997554421 22345889999999999 567889999
Q ss_pred cCCeEEEEeCCCcc----------eecccccCCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCCCceEEE-------Ee
Q 022184 132 VDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTF-------LT 193 (301)
Q Consensus 132 ~dg~i~v~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-------~~ 193 (301)
.|..|+++|+...+ .......|...|..++-.|++ ..+.+++.||+++-+|++....... +.
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 99999999997422 223344566788889999988 6899999999999999986432111 00
Q ss_pred e--cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce------------------Eeeeee-cc----C----
Q 022184 194 R--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------------KIGHKR-LL----R---- 244 (301)
Q Consensus 194 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------~~~~~~-~~----~---- 244 (301)
. ..--...++..+|...+. ++.|+.+-..++||.+... ++..+. .| .
T Consensus 195 ny~~~lielk~ltisp~rp~~----laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYY----LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HhchhhheeeeeeecCCCCce----EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 0 011236789999998873 6889999999999954210 111110 11 0
Q ss_pred ---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184 245 ---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 245 ---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
..++-+.|+|+|.-|++.-....|++||+..++....
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1256688999997776665556899999987665443
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=120.68 Aligned_cols=251 Identities=14% Similarity=0.111 Sum_probs=159.7
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee----CCce--eccccccCCcceEEEECCCCCe
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLV--TYVFDESEGDPMTIAVNPSGDD 77 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~--~~~~~~h~~~v~~~~~~~~~~~ 77 (301)
...|+|++|-|.. ...+++| ..+.|.||..+.....-.. .... ...-.+| .+|+++.|.+||..
T Consensus 140 QrnvtclawRPls--aselavg-------Cr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~ 209 (445)
T KOG2139|consen 140 QRNVTCLAWRPLS--ASELAVG-------CRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI 209 (445)
T ss_pred hcceeEEEeccCC--cceeeee-------ecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE
Confidence 3568999999664 4566663 4455689988764322110 1111 1223445 68999999999999
Q ss_pred EEEEec-CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCcc
Q 022184 78 FVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS 156 (301)
Q Consensus 78 l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 156 (301)
+++++. |..|.|||++++....-. -...+.+.-+.||||+.+|+.+.-|+..++|+..+........-..+.
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL~-------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgr 282 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPLI-------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGR 282 (445)
T ss_pred EeecccCcceEEEEcCCCCCccccc-------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCc
Confidence 999876 578999999988752211 124577889999999999999999999999965433222223334459
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCc------------eE---EEEe-----ec---CCCCeeEEEEccCCCcce
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGV------------AW---TFLT-----RN---SDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~---~~~~-----~~---~~~~v~~~~~~~~~~~~~ 213 (301)
|...+|+|+|.+|+.... +.-++|.+.-.. .. ..+. .+ ..+.+.+++|.|.|.++.
T Consensus 283 vqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 283 VQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred eeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence 999999999997665543 344455442100 00 0000 00 134588999999999732
Q ss_pred EEEEEEeCC-----cceEEEEEccCceEeeeee---ccCCCcEEEEEcC---CCCEEEEeeCCCcEEEEeCC
Q 022184 214 LFCTVQRGD-----KALLAVYDISTWNKIGHKR---LLRKPASVLSISL---DGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 214 ~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~---~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~~~~ 274 (301)
.+.-+.. ...|.+||.+..-.+.... ........++|+| ++.+|..+=..|.+.-|++.
T Consensus 362 --v~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 362 --VIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred --EEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 2333322 3457778877654432221 1123356678877 56778887777888877763
No 203
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=2.6e-17 Score=131.14 Aligned_cols=220 Identities=17% Similarity=0.242 Sum_probs=157.8
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEE-----eeCCCEEEEeecCCeEEEEe
Q 022184 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-----SVDGSRFAAGGVDGHLRIMH 140 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~v~d 140 (301)
+....++-.|++|+..-.+ .+++|+..........+.+ ..+.. ....|-+| .|++--+++|-.-|.+++.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k--~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDK--REYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhh--hcccC-CCCceecccccccCCCCcceEEeeccCceEEec
Confidence 4455555577777765433 4899998864332221111 11111 22344444 34566788888889999998
Q ss_pred CCCcceeccccc-----CCccEEEEEecCCC-cEEEEEeCCCcEEEEeCCC--------------Cc-------------
Q 022184 141 WPSLRIILDEPK-----AHKSVLDMDFSLDS-EFLATTSTDGSARIWKTED--------------GV------------- 187 (301)
Q Consensus 141 ~~~~~~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~--------------~~------------- 187 (301)
....+. .++.. .+..++++.|-|.+ ..++.+-.+|.+.+||..- +.
T Consensus 202 p~~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r 280 (636)
T KOG2394|consen 202 PINFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR 280 (636)
T ss_pred chhhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence 765332 22211 22589999999944 4666777899999997631 11
Q ss_pred -eEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC
Q 022184 188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266 (301)
Q Consensus 188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 266 (301)
++..+... ...|...+|+|||++ +++.+.||.++|||..+.+.+..++..-+...|++|||||+||++|++|.
T Consensus 281 NPv~~w~~~-~g~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 281 NPVARWHIG-EGSINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred CccceeEec-cccccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 11112111 235888999999998 79999999999999999888877777778899999999999999999999
Q ss_pred cEEEEeCCCceeeccccccccCccEEEEEEcc
Q 022184 267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 267 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
.|.||.+...+.+..- ++| .+.|+.|+|.|
T Consensus 355 LVtVwSf~erRVVARG-qGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARG-QGH-KSWVSVVAFDP 384 (636)
T ss_pred eEEEEEeccceEEEec-ccc-ccceeeEeecc
Confidence 9999999999998877 789 99999999985
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=133.49 Aligned_cols=248 Identities=13% Similarity=0.135 Sum_probs=169.1
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT 83 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 83 (301)
..+++|.+++|. .+++|.|. .+|.|.+|.=-.... .......+.-|.+.|++++|+++|.+|++|+.
T Consensus 205 tf~~t~~~~spn---~~~~Aa~d------~dGrI~vw~d~~~~~----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 205 TFNITCVALSPN---ERYLAAGD------SDGRILVWRDFGSSD----DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred cccceeEEeccc---cceEEEec------cCCcEEEEecccccc----ccccceEEEecccccceeEEecCCceEeeccc
Confidence 345799999988 78998877 667778886433111 11123457889999999999999999999999
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc-----------
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK----------- 152 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----------- 152 (301)
.+.+.+|.+++++. ++. +. -.++|..+.+|||+.+.+....|+.|.+....+.+....+.+
T Consensus 272 E~VLv~Wq~~T~~k--qfL----PR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 272 EGVLVLWQLETGKK--QFL----PR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred ceEEEEEeecCCCc--ccc----cc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 99999999998873 221 11 347899999999999999999999999998755443222211
Q ss_pred CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe---------------------------------------
Q 022184 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------------------------------------- 193 (301)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------------------- 193 (301)
..+-.+.++++|.-+.++..+..+.|.+||+.+.+.+..+.
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 12335677888866777778888888888876544433321
Q ss_pred ----------------------------ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc----------e
Q 022184 194 ----------------------------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----------N 235 (301)
Q Consensus 194 ----------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~ 235 (301)
.+|+..+...++.+..+.. ..++++.|+.+++|-+... .
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~---~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSV---RCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccc---eeEEeccCCeEEEEEEecccccCcCccceE
Confidence 1111111111221111110 1568889999999987322 2
Q ss_pred EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 236 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
+...-.-|+.+++.++|+.||..|+++ .++.|.+||..+.
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTK 540 (792)
T ss_pred EeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCCh
Confidence 222222367889999999999766655 5789999999883
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.9e-17 Score=138.10 Aligned_cols=195 Identities=20% Similarity=0.126 Sum_probs=128.5
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEE
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
+..|++||.+.... .....+...+...+|||||+.|+..+.+ ..|++||+.+++... +....+....+
T Consensus 183 ~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP 253 (429)
T ss_pred eEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence 36899999876542 1112345678999999999999887654 479999998875422 22222334568
Q ss_pred EecCCCcEEEEEe-CCCcEEEE--eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-E
Q 022184 161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K 236 (301)
Q Consensus 161 ~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~ 236 (301)
+|+|||+.|+.++ .+|.+.|| |+.+++. ..+..+ ...+....|+|||+.+ ++++..++...+|++.... .
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence 9999999888765 67765555 6665554 444433 3357889999999973 2344556777777764321 1
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
...+ .+.. ..+.|+|||++|++.+.++ +.+||+.+++...... .. ...+++|+|||+
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGI 384 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCC
Confidence 2222 2222 4578999999999887754 6669999887554331 11 235678999985
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=7.4e-16 Score=124.74 Aligned_cols=223 Identities=15% Similarity=0.174 Sum_probs=142.0
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEEeCCC
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS 143 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~d~~~ 143 (301)
.-..+.|+|||+++++++.||.|.++|+.+.+...++ .......++++|+||++++++. .++.+.++|.++
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------ecCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 3345789999999999999999999999988763332 2334568899999999998775 589999999999
Q ss_pred cceecccccC-------CccEEEEEecCCCcEEEEEeC-CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE
Q 022184 144 LRIILDEPKA-------HKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF 215 (301)
Q Consensus 144 ~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (301)
.+.+..+... ...+..+..+|....++..-. -+.|.+.|....+.+...............|+|+++++
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~--- 186 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF--- 186 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE---
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee---
Confidence 9887765432 235778888888885655554 48888889877655443333334457889999999973
Q ss_pred EEEEeCCcceEEEEEccCceEe-------------------------------------------------------eee
Q 022184 216 CTVQRGDKALLAVYDISTWNKI-------------------------------------------------------GHK 240 (301)
Q Consensus 216 ~~~~~~~~~~i~~~d~~~~~~~-------------------------------------------------------~~~ 240 (301)
+++...+..|.++|.++++.+ ..+
T Consensus 187 -~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 187 -LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp -EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred -eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 233344456767776654332 222
Q ss_pred eccCCCcEEEEEcCCCCEEEEe----eCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 241 RLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 241 ~~~~~~v~~~~~s~~~~~l~~~----~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.....+ ..+..+|+++++.+. ...+.|.++|.++.+....+.... ...+..+.|++||+
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~ 328 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK 328 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC
Confidence 221222 446779999999998 345789999999998877764433 44699999999996
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=9.5e-16 Score=116.97 Aligned_cols=236 Identities=15% Similarity=0.165 Sum_probs=170.6
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..+..+.|+.+ ..++.+|..++ .+++..++.+.-. ........|.-+-|+ ..++|..+.+
T Consensus 6 ~ti~~~~~Nqd---~~~lsvGs~~G-------yk~~~~~~~~k~~--------~~~~~~~~IvEmLFS--SSLvaiV~~~ 65 (391)
T KOG2110|consen 6 PTINFIGFNQD---STLLSVGSKDG-------YKIFSCSPFEKCF--------SKDTEGVSIVEMLFS--SSLVAIVSIK 65 (391)
T ss_pred cceeeeeeccc---eeEEEccCCCc-------eeEEecCchHHhh--------cccCCCeEEEEeecc--cceeEEEecC
Confidence 34666778866 56777766544 3788887765411 111123345566675 4466665554
Q ss_pred --CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC---CccEEE
Q 022184 85 --GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLD 159 (301)
Q Consensus 85 --~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~i~~ 159 (301)
..+++.+++.....-. ..-..+|.++.++. +.|+++-++. |+|||+++.+.+.++..- ...+.+
T Consensus 66 qpr~Lkv~~~Kk~~~ICe--------~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~A 134 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICE--------IFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCA 134 (391)
T ss_pred CCceEEEEEcccCceEEE--------EecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEe
Confidence 4588888876543211 12346788888864 4677776554 999999998887766543 345666
Q ss_pred EEecCCCcEEEEEe--CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEEccCceE
Q 022184 160 MDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNK 236 (301)
Q Consensus 160 ~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~ 236 (301)
+++++.+.+++.-+ ..|.|.+||+.+-+....+..| .+.+.+++|+++|.. ++++++.|+ |+|+.+.+++.
T Consensus 135 lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~k 208 (391)
T KOG2110|consen 135 LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQK 208 (391)
T ss_pred eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccE
Confidence 77777777888643 4689999999999999989865 557999999999998 788888876 78999999999
Q ss_pred eeeeeccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 237 IGHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 237 ~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
+.+++... ..|.+++|+|++++|++.+..++|+||.++...
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 88776443 468899999999999999999999999997644
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4e-17 Score=123.12 Aligned_cols=196 Identities=12% Similarity=0.182 Sum_probs=148.5
Q ss_pred CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceeccc--c
Q 022184 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P 151 (301)
Q Consensus 76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~ 151 (301)
..+|++-..|.|++||..+++....+ ..+...++.+.|.. ....+.+++.||+|++||++.......+ .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 56888888999999999987652222 22445667888876 4567899999999999999876554333 2
Q ss_pred cCC-ccEEEEEecCCCcEEEEEe----CCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 152 ~~~-~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
.+. .+..+++.+..++.+++|. .+-.|.+||.|..+. +..+...|...|+++.|+|....+ +++++.||.
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL 189 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL 189 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence 333 3677777777788888876 356799999998776 677766666679999999998874 799999999
Q ss_pred EEEEEccCceE---eeeeeccCCCcEEEEEcCCC-CEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 226 i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
|.+||++.... +.....+...|..+.|..++ +.|.+-+......+|+++.+.....+
T Consensus 190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 99999976532 22334456779999998876 55888888999999999987654443
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.77 E-value=2.5e-16 Score=116.27 Aligned_cols=156 Identities=16% Similarity=0.161 Sum_probs=108.9
Q ss_pred eEEEEeeCCCEEEEeec----------CCeEEEEeCCCc-ceecccc-cCCccEEEEEecCCCcEEEEE--eCCCcEEEE
Q 022184 116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATT--STDGSARIW 181 (301)
Q Consensus 116 ~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~ 181 (301)
..+.|+|+|++|+.-.. -+...+|.++.. .....+. ...++|.+++|+|+|+.|++. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988765433 134555555322 2222332 234579999999999987654 356799999
Q ss_pred eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEE
Q 022184 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM 261 (301)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 261 (301)
|++ ++.+..+. ...+..+.|+|+|+++.+ ...+...|.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~--~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG---TQPRNTISWSPDGRFLVL--AGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec---CCCceEEEECCCCCEEEE--EEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 996 56556554 235788999999997321 1123446789999999888876554 234789999999999999
Q ss_pred eeC------CCcEEEEeCCCceeec
Q 022184 262 GSK------DGDICVVDVKKMEINH 280 (301)
Q Consensus 262 ~~~------d~~i~i~~~~~~~~~~ 280 (301)
++. |+.++||+.. |+++.
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeE
Confidence 874 7889999985 54444
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=135.37 Aligned_cols=253 Identities=14% Similarity=0.160 Sum_probs=191.2
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
-+.+.+..+ +.++++|+..+ .+..++|. +..+... .. -...|.++.|-.+.+++|++ ....
T Consensus 132 PY~~~ytrn---GrhlllgGrKG------HlAa~Dw~--t~~L~~E----i~---v~Etv~Dv~~LHneq~~AVA-QK~y 192 (545)
T KOG1272|consen 132 PYHLDYTRN---GRHLLLGGRKG------HLAAFDWV--TKKLHFE----IN---VMETVRDVTFLHNEQFFAVA-QKKY 192 (545)
T ss_pred CeeeeecCC---ccEEEecCCcc------ceeeeecc--cceeeee----ee---hhhhhhhhhhhcchHHHHhh-hhce
Confidence 345667655 77888888544 44555554 3333221 11 14679999999988888887 5666
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCC
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS 166 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (301)
++|||-.+.+. .-+.....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+
T Consensus 193 ~yvYD~~GtEl---------HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 193 VYVYDNNGTEL---------HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred EEEecCCCcEE---------eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 99999766543 222344678899999998889999999999999999999998888888899999999988
Q ss_pred cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCC
Q 022184 167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP 246 (301)
Q Consensus 167 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 246 (301)
..+-+|...|+|.+|.....+++..+..|. ++|.++++.++|.+ +++.+.|..++|||+++...+..... ..+
T Consensus 264 aVih~GhsnGtVSlWSP~skePLvKiLcH~-g~V~siAv~~~G~Y-----MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~ 336 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSIAVDRGGRY-----MATTGLDRKVKIWDLRNFYQLHTYRT-PHP 336 (545)
T ss_pred ceEEEcCCCceEEecCCCCcchHHHHHhcC-CCcceEEECCCCcE-----EeecccccceeEeeeccccccceeec-CCC
Confidence 899999999999999999999888887664 57999999999998 79999999999999999887666655 567
Q ss_pred cEEEEEcCCCCEEEEeeCCCcEEEEeCC-C----ceeeccccccccCccEEEEEEcc
Q 022184 247 ASVLSISLDGKYLAMGSKDGDICVVDVK-K----MEINHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 247 v~~~~~s~~~~~l~~~~~d~~i~i~~~~-~----~~~~~~~~~~~~~~~v~~~~~sp 298 (301)
...+++|..| +||.+ ....|.||.=. . ++..+.. ... .++|..+.|.|
T Consensus 337 a~~ls~Sqkg-lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~~-~~~V~~l~FcP 389 (545)
T KOG1272|consen 337 ASNLSLSQKG-LLALS-YGDHVQIWKDALKGSGHGETPYMN-HRC-GGPVEDLRFCP 389 (545)
T ss_pred cccccccccc-ceeee-cCCeeeeehhhhcCCCCCCcchhh-hcc-Ccccccceecc
Confidence 7889998766 34444 34479999632 1 1222221 122 46888888877
No 211
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=3.3e-17 Score=133.30 Aligned_cols=219 Identities=12% Similarity=0.178 Sum_probs=157.2
Q ss_pred ccccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe
Q 022184 57 YVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH 135 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 135 (301)
..+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+.. ..+.......-...-.+.++.|+|...-|+..+..|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcc-cccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 35788999999999999 455889999999999999984432 2221111222223457889999996555655566899
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+++||+.+++.+..+.+|.+.|.+..|+.||..|++++.|..|+|||.+. ++.++....|....-..+.|.-+-.++ +
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl-i 230 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL-I 230 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh-h
Confidence 99999999999999999999999999999999999999999999999985 566666666655455667787665551 1
Q ss_pred EEEEEeCCcceEEEEEccCceE-eeeeec-cCCCcEEEEEcCCCCEEEEe-eCCCcEEEEeCCCce
Q 022184 215 FCTVQRGDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME 277 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~~~~~~~ 277 (301)
...+..-.-..|++||.+.... +..+.. ....+.-.-|.||.++|+.+ -.++++..+++...+
T Consensus 231 sTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 231 STGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred hcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 1122223446799999987543 222222 12345555689998766554 456788888887654
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.1e-16 Score=121.64 Aligned_cols=251 Identities=9% Similarity=0.074 Sum_probs=174.2
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccc-cccCCcceEEEECCCCCeEEE
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVC 80 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~ 80 (301)
+..+.|.++.|+.+ ..++|.|+.+. ..++|.++..-... .|...... ..|...|.|++|....+++.+
T Consensus 54 ~H~GCiNAlqFS~N---~~~L~SGGDD~------~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 54 EHTGCINALQFSHN---DRFLASGGDDM------HGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhccccceeeeccC---CeEEeecCCcc------eeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEec
Confidence 34678899999977 78999888544 44899887543222 22333333 345689999999999999999
Q ss_pred EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce-e--cccccCCccE
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-I--LDEPKAHKSV 157 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~-~--~~~~~~~~~i 157 (301)
|..+++|.+.|+++.+...... .....+.|+.+..+|..+.|++.+.++.|.+||.+.... . .-........
T Consensus 123 G~~~~~VI~HDiEt~qsi~V~~-----~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSIYVAN-----ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred CCCcceeEeeecccceeeeeec-----ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 9999999999999877522111 111235899999999889999999999999999976542 1 1122233567
Q ss_pred EEEEecCC-CcEEEEEeCCCcEEEEeCCCCceE-EE--------------------------------------------
Q 022184 158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAW-TF-------------------------------------------- 191 (301)
Q Consensus 158 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~-------------------------------------------- 191 (301)
..+.|+|. ..+|++.+..+-+-+||.+..... ..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 88899995 457888888888999998753210 00
Q ss_pred ---EeecC-C------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-----------------------eEee
Q 022184 192 ---LTRNS-D------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-----------------------NKIG 238 (301)
Q Consensus 192 ---~~~~~-~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----------------------~~~~ 238 (301)
++..+ . ..+.+++|.-|.. +++++.+-.|++|.+... +.+.
T Consensus 278 ~~V~k~D~N~~GY~N~~T~KS~~F~~D~~------v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 278 CFVLKSDHNPNGYCNIKTIKSMTFIDDYT------VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ceeEeccCCCCcceeeeeeeeeeeeccee------eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 00000 0 0122233332222 578888889999987421 1234
Q ss_pred eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 239 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.+++|..-+..+.|+|...+|++.+-.+.++||.--
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecccccccceeecCCcceEeccchhhheeccccc
Confidence 567888899999999999999999999999999753
No 213
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-15 Score=128.07 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=149.4
Q ss_pred eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCC
Q 022184 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGP 114 (301)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 114 (301)
+||..+.++... ..+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +. ...+.
T Consensus 180 ~l~~~d~~g~~~-------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~------l~--~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGARA-------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ------IT--NFEGL 244 (430)
T ss_pred EEEEECCCCCCc-------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE------cc--CCCCC
Confidence 566666554321 2234556788999999999999876643 368888987765311 11 11233
Q ss_pred eeEEEEeeCCCEEEEe-ecCC--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCce
Q 022184 115 QKCLSFSVDGSRFAAG-GVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVA 188 (301)
Q Consensus 115 v~~~~~s~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~ 188 (301)
.....|+|||+.|+.. ..+| .|+++|+.+++.. .+..+........|+|||+.|+..+. ++ .|.++|+.+++.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4568999999988744 4444 6888899877653 34444445667889999998776653 33 577778877764
Q ss_pred EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---
Q 022184 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD--- 265 (301)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 265 (301)
..... . ........|+|+|+.+++ .........|.++|+.+++... +.. ........|+|||++++..+.+
T Consensus 324 ~~lt~-~-~~~~~~~~~Spdg~~i~~--~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~ 397 (430)
T PRK00178 324 ERVTF-V-GNYNARPRLSADGKTLVM--VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGR 397 (430)
T ss_pred EEeec-C-CCCccceEECCCCCEEEE--EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCc
Confidence 33322 1 122446789999997422 1111223468899998876432 222 2222356899999999887654
Q ss_pred CcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 266 ~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
..|.++++...... .+ ..+ .+.+...+|+|-
T Consensus 398 ~~l~~~~~~g~~~~-~l-~~~-~g~~~~p~ws~~ 428 (430)
T PRK00178 398 GVLMLVSINGRVRL-PL-PTA-QGEVREPSWSPY 428 (430)
T ss_pred eEEEEEECCCCceE-EC-cCC-CCCcCCCccCCC
Confidence 35777787654432 23 223 456788888873
No 214
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.5e-15 Score=126.02 Aligned_cols=242 Identities=16% Similarity=0.105 Sum_probs=146.4
Q ss_pred eeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE---EEecCC--cEEEEEEcCCccccccccccCCCCCC
Q 022184 37 LEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV---CSTTNG--GCKLFEVYGGATDINLLAKKMPPLQD 111 (301)
Q Consensus 37 ~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~---~~~~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~ 111 (301)
-+||..+.++... ..+......+.+-+|+|||+.++ +...++ .|++.++.+++.. . +. ..
T Consensus 165 ~~l~~~d~dG~~~-------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~-----lt--~~ 229 (428)
T PRK01029 165 GELWSVDYDGQNL-------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-K-----IL--AL 229 (428)
T ss_pred ceEEEEcCCCCCc-------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-E-----ee--cC
Confidence 3677776665432 12333455677889999998532 333443 5777777766431 1 11 12
Q ss_pred CCCeeEEEEeeCCCEEEEeec-CC----eEEEEeCCCc--ceecccccCC-ccEEEEEecCCCcEEEEEe-CCCcEEEE-
Q 022184 112 AGPQKCLSFSVDGSRFAAGGV-DG----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW- 181 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~-dg----~i~v~d~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d~~i~i~- 181 (301)
.+.....+|||||+.|+..+. +| .+..|++..+ .....+.... ......+|+|||+.|+..+ .++...+|
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 234456899999998887653 22 3444676643 1222232222 3346789999999888766 46655555
Q ss_pred -eCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE
Q 022184 182 -KTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (301)
Q Consensus 182 -d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 259 (301)
++.. +.....+... ...+....|+|||+.+++ .........|.+||+.+++... +......+..+.|+|||++|
T Consensus 310 ~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 310 MQIDPEGQSPRLLTKK-YRNSSCPAWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHL 385 (428)
T ss_pred EECcccccceEEeccC-CCCccceeECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEE
Confidence 4432 2333444332 234678899999997322 1111224579999998887643 33233456789999999988
Q ss_pred EEeeC---CCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 260 AMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 260 ~~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
+.... ...|+++|+.+++...... . .+.+...+|+|-.
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~-~g~~~~p~Ws~~~ 426 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKKTRKIVI--G-SGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeec--C-CCcccCceecCCC
Confidence 76543 3568899998887655542 2 4567788998853
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=1.4e-16 Score=132.76 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=118.5
Q ss_pred CCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEe--CC
Q 022184 111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWK--TE 184 (301)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d--~~ 184 (301)
+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+.....+|+|||+.|+ +.+.++...||. +.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 45678899999999999887643 45999999888653 2333334567899999999876 456777766665 44
Q ss_pred CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE--EccCceEeeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG 262 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 262 (301)
.+. ...+..+ ........|+|||+.++ +++..++...+| ++.+++.. .+..........+|||||++|+..
T Consensus 273 ~~~-~~~lt~~-~~~~~~~~wSpDG~~l~----f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 273 GSG-LRRLTQS-SGIDTEPFFSPDGRSIY----FTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCC-cEECCCC-CCCCcCeEEcCCCCEEE----EEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence 443 3444332 23456788999999732 233334444555 54544432 222223334567899999999987
Q ss_pred eCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 263 ~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+.++ .|.+||+.+++...... ......+.|+|||+
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~lt~----~~~~~~p~~spdg~ 383 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTALTD----TTRDESPSFAPNGR 383 (427)
T ss_pred EccCCcEEEEEEECCCCCeEEccC----CCCccCceECCCCC
Confidence 7654 59999999887654432 22346789999986
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=9.7e-17 Score=123.48 Aligned_cols=221 Identities=11% Similarity=0.017 Sum_probs=160.6
Q ss_pred CceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec
Q 022184 53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV 132 (301)
Q Consensus 53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 132 (301)
+.....+.+|.+.|+++.|+.++++|++|+.|..+++|.++..-.......-......|...|.|++|....+++++|..
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 44556678999999999999999999999999999999997532211111111222235588999999999999999999
Q ss_pred CCeEEEEeCCCcceecccccCC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEE-EeecCCCCeeEEEEcc
Q 022184 133 DGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK 207 (301)
Q Consensus 133 dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~ 207 (301)
+++|..-|+++.+.+... .+. +.|+.+..+|..+.|++.+.++.|.+||.+... .... +....+.....+.|+|
T Consensus 126 ~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred cceeEeeecccceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999998876544 333 489999999999999999999999999998755 2222 2223344578899999
Q ss_pred CCCcceEEEEEEeCCcceEEEEEccCceEe-ee---eeccC---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184 208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GH---KRLLR---KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~---~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 278 (301)
....+ +++.+..+-+.+||.+..... .. +.+.. ..-..+.|+|+|..+.+--....=.+||+-+..+
T Consensus 205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 88763 577777888999999865431 11 11111 1224578999998887765544555677665443
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-15 Score=132.12 Aligned_cols=269 Identities=12% Similarity=0.105 Sum_probs=183.2
Q ss_pred CCCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184 1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (301)
Q Consensus 1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (301)
||+...|..++-+++ ...++++|+ .||++++|+...-.+.. .....+.++.-...++.++...+.++.+|+
T Consensus 1045 ~Ehs~~v~k~a~s~~--~~s~FvsgS------~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSE--HTSLFVSGS------DDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred hhccccccceeecCC--CCceEEEec------CCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 355666666666643 357888866 78888999986543321 111223334445778999999999999999
Q ss_pred EecCCcEEEEEEcCCccccccccc-cCCCCCCCCCe-eEEEEee-CCC-EEEEeecCCeEEEEeCCCcceeccc--ccCC
Q 022184 81 STTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQ-KCLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKAH 154 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~-~~~~~~~~~~v-~~~~~s~-~~~-~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~ 154 (301)
++.||.|++.+++........... ........+.+ ..-+|.. ... .++.+..-+.|..||++.......+ ...+
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999999874322211111 12222223333 3334443 344 6888888899999999876654433 3456
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC-CcceEEEEEccC
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST 233 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~ 233 (301)
+.|++++.+|.+.+++.|+..|.+.+||+|-+.++..+..+...+++.+..+|-....-.. +.++. ..+.|.+|++.+
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence 7899999999999999999999999999999999999987777788888887765521111 23333 678899999998
Q ss_pred ceEeeeeecc-C----------------C--CcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184 234 WNKIGHKRLL-R----------------K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 234 ~~~~~~~~~~-~----------------~--~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
+.....+... + . ......+...+..+.+|+.|..|+.||....+..
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 8654444332 1 0 1112233334568999999999999999766544
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.7e-16 Score=130.16 Aligned_cols=198 Identities=14% Similarity=0.054 Sum_probs=133.3
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---CCeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|.++|.++... .....+...+...+|+|||+.|+..+. +..|++||+.+++.. .+....+.+...+|
T Consensus 183 ~l~~~d~dg~~~--------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~ 253 (435)
T PRK05137 183 RLAIMDQDGANV--------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF 253 (435)
T ss_pred EEEEECCCCCCc--------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence 677777755432 111235568999999999999988764 468999999887653 34444556778999
Q ss_pred cCCCcEEE-EEeCCCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 163 ~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
+|||+.|+ +.+.++. |.+||+.+++.. .+..+ ........|+|||+.+++ .........|+++|+.+++.. .
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~~~~~~~spDG~~i~f--~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAIDTSPSYSPDGSQIVF--ESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceE-EccCC-CCccCceeEcCCCCEEEE--EECCCCCCeEEEEECCCCCeE-E
Confidence 99999775 4555554 777798877653 34332 334667899999997321 111222347888998776543 3
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+......+..+.|+|||++|+....+ ..|.+||+.++...... . ...+..+.|+|||+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~---~~~~~~p~~spDG~ 389 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-S---GFLVEGPTWAPNGR 389 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-C---CCCCCCCeECCCCC
Confidence 33334556678999999999887643 36888998665543222 2 23467889999986
No 219
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.2e-15 Score=130.77 Aligned_cols=273 Identities=12% Similarity=0.147 Sum_probs=173.2
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEEecC
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTN 84 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d 84 (301)
-..+.|+|- ...+++++ ....+++|+|..... +.. ... -......|+.+.+-. |...+++++.|
T Consensus 1067 pk~~~~hpf---~p~i~~ad------~r~~i~vwd~e~~~~-l~~--F~n--~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHPF---EPQIAAAD------DRERIRVWDWEKGRL-LNG--FDN--GAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CceeeecCC---CceeEEcC------CcceEEEEecccCce-ecc--ccC--CCCCCCccceeeeecccchhheeeeccC
Confidence 344556654 33455533 234568999876542 111 000 012245688888855 45588999999
Q ss_pred CcEEEEEEcCCc-cccccccc--cCCCC-C-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-ccEE
Q 022184 85 GGCKLFEVYGGA-TDINLLAK--KMPPL-Q-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVL 158 (301)
Q Consensus 85 ~~i~~w~~~~~~-~~~~~~~~--~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~i~ 158 (301)
|.|+||+-.... ...++... .+... . ..+.-.-+.|.....+|+++++-..|+|||.........+.... ..++
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 999999864332 22222111 01100 0 11111456777765566666668899999998877776665443 3577
Q ss_pred EEEecC-CCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCC-CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 159 DMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 159 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
++.-+- .|+.+++|..||.|++||.|.... +.....|.. .+|..+.+.+.|-.. +++++.+|.|++||++.
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcc----eeeeccCCeEEEEeccc
Confidence 665543 578999999999999999986543 333333322 238888898876542 68999999999999998
Q ss_pred ceEeee--eecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc----ccccCccEEEEEEcc
Q 022184 234 WNKIGH--KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCP 298 (301)
Q Consensus 234 ~~~~~~--~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~----~~~~~~~v~~~~~sp 298 (301)
...... +..| ++..+++..+++...+|+|+. +.|+||++...++..... -+...+.+.+++|+|
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecc
Confidence 432221 1222 235899999999999999998 899999996543322111 111246789999998
No 220
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.7e-15 Score=126.57 Aligned_cols=221 Identities=15% Similarity=0.144 Sum_probs=138.4
Q ss_pred cccCCcceEEEECCCCCeEEEEecC-C--cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCe
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGH 135 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~ 135 (301)
..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +... .+.....+|+|||+.|+. .+.++.
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------lt~~--~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------VTSF--PGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------ecCC--CCCcCCeeECCCCCEEEEEEeCCCC
Confidence 3456778899999999999876543 3 58888887664311 1111 123346899999998865 455564
Q ss_pred --EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184 136 --LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 136 --i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
|+++|+.+++. ..+..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +... .......+|+|||+
T Consensus 286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG~ 362 (448)
T PRK04792 286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDGR 362 (448)
T ss_pred eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCCC
Confidence 77888877765 334444445677899999998876653 33 46677887776543 3211 12234578999999
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeecccccccc
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHL 287 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~ 287 (301)
++++ .........|.++|+.+++... +... .......|+|||+.|+..+.+ + .+++++.. +.....+ ..+
T Consensus 363 ~l~~--~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l-~~~- 435 (448)
T PRK04792 363 SMIM--VNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL-PAG- 435 (448)
T ss_pred EEEE--EEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC-cCC-
Confidence 7432 1122223367778888776432 2221 122345899999988876644 3 37777874 4444434 233
Q ss_pred CccEEEEEEcc
Q 022184 288 GTSIALVEFCP 298 (301)
Q Consensus 288 ~~~v~~~~~sp 298 (301)
.+.+...+|+|
T Consensus 436 ~g~~~~p~Wsp 446 (448)
T PRK04792 436 QGEVKSPAWSP 446 (448)
T ss_pred CCCcCCCccCC
Confidence 45678889987
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4.9e-16 Score=133.12 Aligned_cols=253 Identities=14% Similarity=0.167 Sum_probs=168.5
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCc---ceeeeCCce-eccccccCCcceEEEECCCCCeEEE
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT---TSVYTSPLV-TYVFDESEGDPMTIAVNPSGDDFVC 80 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (301)
..|+.+.+..+.+ ..++.+|. .||.|+||+--... ..+...... .-.+.+..+.=.-+.|.....+|++
T Consensus 1110 t~Vs~l~liNe~D-~aLlLtas------~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~ 1182 (1387)
T KOG1517|consen 1110 TRVSDLELINEQD-DALLLTAS------SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV 1182 (1387)
T ss_pred Cccceeeeecccc-hhheeeec------cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe
Confidence 4566777764432 34444444 78889999754432 122111110 1111222222355778876667777
Q ss_pred EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcc---eecccccCCcc
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKS 156 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~ 156 (301)
++.-..|+|||.........+... ....++++.-+- .|+.|++|..||.|++||.+... .+.....|...
T Consensus 1183 tGd~r~IRIWDa~~E~~~~diP~~------s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1183 TGDVRSIRIWDAHKEQVVADIPYG------SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred cCCeeEEEEEecccceeEeecccC------CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 777889999999876653333221 234556655443 57999999999999999987543 24445566654
Q ss_pred --EEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEE--eecC--CCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 157 --VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFL--TRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 157 --i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
|..+.+.+.|- .|++++.||.|++||+|.......+ ..+. +...+++..+++... +++|+. +.|+||
T Consensus 1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi-----iAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI-----IASGSA-QLIKIY 1330 (1387)
T ss_pred ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe-----eeecCc-ceEEEE
Confidence 99999999775 5999999999999999985322222 2222 334889999999885 566665 899999
Q ss_pred EccCceEeeeeec-------cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 230 DISTWNKIGHKRL-------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 230 d~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
++...+ +..++. ....+.+++|+|..-++|+|+.|..|.||......
T Consensus 1331 ~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 987533 222222 12568999999999999999999999999987654
No 222
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.73 E-value=1.5e-14 Score=108.56 Aligned_cols=193 Identities=19% Similarity=0.253 Sum_probs=133.7
Q ss_pred cEEE-ecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc
Q 022184 20 NLVV-LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (301)
Q Consensus 20 ~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 98 (301)
+++| +||+...-...|++.||+ |...... .+.. ...+|.++.+.++ +|++. ..+.|+||.....-..
T Consensus 59 N~laLVGGg~~pky~pNkviIWD-D~k~~~i-----~el~---f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~ 126 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWD-DLKERCI-----IELS---FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL 126 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEe-cccCcEE-----EEEE---eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh
Confidence 4444 455544445778899998 3333221 1222 3678999999764 46655 4667999999854332
Q ss_pred cccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCC
Q 022184 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTD 175 (301)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 175 (301)
..... .........+++-..+..+||. |-.-|.|+|-|+...+. ...+..|.+.|.+++.+.+|..+||+|..
T Consensus 127 l~~~e----t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 127 LHVIE----TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred eeeee----cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence 22111 1111223333332223444444 33469999999976554 35677899999999999999999999998
Q ss_pred Cc-EEEEeCCCCceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 176 GS-ARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 176 ~~-i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
|+ |||||..+|+.+..+..+. ...+.+++|||+..+ ++.+++.|+|++|.++.
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~-----LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW-----LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE-----EEEEcCCCeEEEEEeec
Confidence 87 8999999999999987543 346999999999998 78999999999998865
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.9e-16 Score=129.38 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=130.7
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEE
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
..|.+||...... .....+...+...+|+|||+.|+..+.+ ..|++||+.+++.. .+....+....++
T Consensus 184 ~~l~i~D~~g~~~--------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYNP--------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCCc--------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCce
Confidence 3588888764432 1122345678899999999999887643 46999999887653 2323334455789
Q ss_pred ecCCCcEEE-EEeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc--eEEEEEccCceE
Q 022184 162 FSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNK 236 (301)
Q Consensus 162 ~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~ 236 (301)
|+|||+.|+ +.+.++ .|.+||+.+++... +..+ .......+|+|||+.++ ++...++ .|.++|+.+++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~-~~~~~~~~~spDG~~l~----f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNH-FGIDTEPTWAPDGKSIY----FTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEE----EEECCCCCceEEEEECCCCCe
Confidence 999999775 445555 59999998876533 3322 23356789999999732 2333333 477778776654
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
. .+.........++|+|||++|+..+.++ .|.+||+.+++..... . ........|+|||+
T Consensus 329 ~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~ 391 (433)
T PRK04922 329 E-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGS 391 (433)
T ss_pred E-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCC
Confidence 3 2322334455789999999998875443 5999999888765432 2 22345679999986
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.73 E-value=2.9e-15 Score=125.34 Aligned_cols=218 Identities=16% Similarity=0.131 Sum_probs=139.7
Q ss_pred ccccCCcceEEEECCCCCeEEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe-ecC-
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVD- 133 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d- 133 (301)
+..+...+...+|+|+|++|+.+..+ ..|++|++.+++... . ..+...+.+++|+|||+.|+.. +.+
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------~--~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------V--ASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------e--ecCCCCccceEECCCCCEEEEEECCCC
Confidence 34456678899999999999987654 479999998764311 1 1123445678999999877654 433
Q ss_pred -CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184 134 -GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (301)
Q Consensus 134 -g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (301)
..|++||+.+++.. .+..+........|+||++.|+..+. ++ .|.++|+.+++.. .+... ......+.|+|+|
T Consensus 257 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~spdg 333 (417)
T TIGR02800 257 NPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSPDG 333 (417)
T ss_pred CccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECCCC
Confidence 35888998876543 33334444556789999998877654 33 5788888776643 33322 2346788999999
Q ss_pred CcceEEEEEEeCCc---ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeecccc
Q 022184 210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSK 283 (301)
Q Consensus 210 ~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~ 283 (301)
+++ +....+ ..|.+||+.++... .+.. ........|+|||++|+..+.++ .+.+.+..... ...+
T Consensus 334 ~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~-~~~~- 404 (417)
T TIGR02800 334 DLI-----AFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF-RARL- 404 (417)
T ss_pred CEE-----EEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce-eeEC-
Confidence 973 222223 37999998875432 2222 22345568999999988887654 46666654433 3333
Q ss_pred ccccCccEEEEEEc
Q 022184 284 RLHLGTSIALVEFC 297 (301)
Q Consensus 284 ~~~~~~~v~~~~~s 297 (301)
..+ .+.+..++|+
T Consensus 405 ~~~-~g~~~~~~ws 417 (417)
T TIGR02800 405 PLG-NGDVREPAWS 417 (417)
T ss_pred CCC-CCCcCCCCCC
Confidence 223 4456666664
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.5e-15 Score=126.43 Aligned_cols=221 Identities=12% Similarity=0.064 Sum_probs=134.0
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-e
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-T 82 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~ 82 (301)
..++.+.+|+|| ++.++..... .... .+|.++..+.... .+....+.+..++|+|||+.|+.. +
T Consensus 198 ~~~~~~p~wSPD---G~~la~~s~~---~g~~--~i~i~dl~~G~~~-------~l~~~~~~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 198 PQPLMSPAWSPD---GSKLAYVTFE---SGRS--ALVIQTLANGAVR-------QVASFPRHNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred CCceeeeEEcCC---CCEEEEEEec---CCCc--EEEEEECCCCCeE-------EccCCCCCcCCeEECCCCCEEEEEEc
Confidence 346788999988 4555542210 0122 3444443332211 111223334568999999988865 3
Q ss_pred cCC--cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-C--eEEEEeCCCcceecccccCCccE
Q 022184 83 TNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-G--HLRIMHWPSLRIILDEPKAHKSV 157 (301)
Q Consensus 83 ~d~--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~i 157 (301)
.++ .|++||+++++.. . ...+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+.......
T Consensus 263 ~~g~~~I~~~d~~tg~~~-~-------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIR-Q-------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred CCCCcEEEEEECCCCCEE-E-------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 444 5888888766431 1 11223456788999999998877754 4 455557666554 2333333455
Q ss_pred EEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 158 LDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
....|+|||++|+..+.+ ..|.+||+.+++.. .+... .......|+|||+.+++ ....+....+.++++..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~--~s~~~~~~~l~~~~~~G- 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIY--SSSQGMGSVLNLVSTDG- 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEE--EEcCCCceEEEEEECCC-
Confidence 678999999998876643 35888999887643 34322 12456789999997321 11122234578888854
Q ss_pred eEeeeeeccCCCcEEEEEcC
Q 022184 235 NKIGHKRLLRKPASVLSISL 254 (301)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~ 254 (301)
+....+..+.+.+...+|+|
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCeEECccCCCCcCCcccCC
Confidence 44445666777888899987
No 226
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=127.43 Aligned_cols=220 Identities=14% Similarity=0.141 Sum_probs=164.5
Q ss_pred eccccccCCcceEEEECCCCC---eEEEEecCCcEEEEEEcCCcc-----------------------------------
Q 022184 56 TYVFDESEGDPMTIAVNPSGD---DFVCSTTNGGCKLFEVYGGAT----------------------------------- 97 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~---~l~~~~~d~~i~~w~~~~~~~----------------------------------- 97 (301)
...+.+|..++..+.+.|... ++.+++.||.|++||...+..
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~ 129 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI 129 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence 447899999999999988554 677899999999999877654
Q ss_pred -----------------------------------------------------------cc--ccccccCCCCCCCCCee
Q 022184 98 -----------------------------------------------------------DI--NLLAKKMPPLQDAGPQK 116 (301)
Q Consensus 98 -----------------------------------------------------------~~--~~~~~~~~~~~~~~~v~ 116 (301)
.. +..........|.-.++
T Consensus 130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t 209 (792)
T KOG1963|consen 130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT 209 (792)
T ss_pred eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence 00 00000111122444578
Q ss_pred EEEEeeCCCEEEEeecCCeEEEEeCCC--c--ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184 117 CLSFSVDGSRFAAGGVDGHLRIMHWPS--L--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 117 ~~~~s~~~~~l~~~~~dg~i~v~d~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 192 (301)
+.++||+++++++|..||.|.+|.--. . .....+.-|+.+|.+++|+++|.+|++|+..+.+.+|.+.+++ ..+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqf 287 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQF 287 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccc
Confidence 999999999999999999999995321 1 1223455688899999999999999999999999999999988 444
Q ss_pred eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-----------cCCCcEEEEEcCCCCEEEE
Q 022184 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----------LRKPASVLSISLDGKYLAM 261 (301)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~ 261 (301)
...-+.+|..+.++||+.. ......|++|.+..+.+.+....+.+ ..+-.+.++++|.-+.++.
T Consensus 288 LPRLgs~I~~i~vS~ds~~-----~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDL-----YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred ccccCCeeEEEEEcCCCCe-----EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 4445678999999999997 45556699999998765443322221 1344677899997778888
Q ss_pred eeCCCcEEEEeCCCceeeccc
Q 022184 262 GSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 262 ~~~d~~i~i~~~~~~~~~~~~ 282 (301)
.+..|.|.+||+.+.+.+..+
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred cCCCceEEEEeccccceeeeE
Confidence 889999999999887655443
No 227
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=3.4e-17 Score=136.85 Aligned_cols=240 Identities=15% Similarity=0.203 Sum_probs=173.6
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..|+|+.|-.. +.++++|. .|..++||..+... ......||.+.|+.++.+.+..++++++.|
T Consensus 191 naVyca~fDrt---g~~Iitgs------dd~lvKiwS~et~~--------~lAs~rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 191 NAVYCAIFDRT---GRYIITGS------DDRLVKIWSMETAR--------CLASCRGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred hheeeeeeccc---cceEeecC------ccceeeeeeccchh--------hhccCCCCccccchhccchhhhhhhhcccC
Confidence 45899999866 77888877 55567999854322 234578999999999999999999999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-----ccCCc----
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHK---- 155 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~---- 155 (301)
..|++|.+..+.... -..+|.+.|++++|+|-. +.+.||++++||.+ ....... ....+
T Consensus 254 ~vIrvWrl~~~~pvs-------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVS-------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred ceEEEEecCCCchHH-------HHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceee
Confidence 999999999887522 223588999999999954 67789999999986 1110000 00001
Q ss_pred ----------------------cEEEEEecCCCcEEEEEe-----------CCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184 156 ----------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (301)
Q Consensus 156 ----------------------~i~~~~~~~~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (301)
.+..++|....-.+++.+ .+-.+++|++.++...+.+.++.. .+..
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~~yv 400 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-EVYV 400 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-ceee
Confidence 122333333333333333 233467777777777776665544 5889
Q ss_pred EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 278 (301)
+.++|-...+ ..+++.||...|||+-.+.+++........+..-+||+||..++....-|.++|.....++.
T Consensus 401 Ld~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 401 LDVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 9999987764 57789999999999998888766655556677789999999999998889999998765543
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.72 E-value=2.1e-15 Score=111.33 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=110.1
Q ss_pred eEEEECCCCCeEEEEec----------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe--ecCC
Q 022184 67 MTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG--GVDG 134 (301)
Q Consensus 67 ~~~~~~~~~~~l~~~~~----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg 134 (301)
..+.|+|+|++|+.-.. -+...+|.++....... ...+...++|.+++|+|+|+.|++. ..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-----~i~l~~~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-----SIELKKEGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-----eeeccCCCceEEEEECcCCCEEEEEEccCCc
Confidence 36889999998775432 23466777754433211 1122234579999999999987654 4567
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
.|.+||++ ++.+..+. ...+..+.|+|+|++|++++.+ |.+.+||.++.+.+.... +. .+..++|+|+|++
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSPDGRY 157 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcCCCCE
Confidence 99999996 55555553 4577899999999999998754 569999999888877664 22 3789999999998
Q ss_pred ceEEEEEE---eCCcceEEEEEccCceEee
Q 022184 212 PFLFCTVQ---RGDKALLAVYDISTWNKIG 238 (301)
Q Consensus 212 ~~~~~~~~---~~~~~~i~~~d~~~~~~~~ 238 (301)
+.. ..+ -..|+.++||+.. |+.+.
T Consensus 158 ~~t--a~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 158 LAT--ATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEE--EEeccceeccccEEEEEec-CeEeE
Confidence 321 111 1247889999985 45443
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.72 E-value=3.7e-13 Score=109.23 Aligned_cols=255 Identities=15% Similarity=0.204 Sum_probs=160.2
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccc--c----c-
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLL--A----K- 104 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~--~----~- 104 (301)
..+.+..|.++.+...+... ............++++|++++|+++.. +|.+.++++.......... . .
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~----~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g 135 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLL----NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG 135 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEE----EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred CCCCEEEEEECCCcceeEEe----eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence 45677888888774444221 111113445678999999999998874 7999999998742211111 0 0
Q ss_pred cCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcc--ee--ccc-ccCCccEEEEEecCCCcEEEEEe-CCCc
Q 022184 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLR--II--LDE-PKAHKSVLDMDFSLDSEFLATTS-TDGS 177 (301)
Q Consensus 105 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~--~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~-~d~~ 177 (301)
.....+......++.|+|+++++++... ...|.+|++.... .. ..+ .........++|+|++++++... .+++
T Consensus 136 ~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 136 PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 0011123356789999999998887643 4579999987654 21 111 12334678999999999776554 6778
Q ss_pred EEEEeCC--CCce--EEEEeec---C--CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC--c--eEeeeeeccC
Q 022184 178 ARIWKTE--DGVA--WTFLTRN---S--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--W--NKIGHKRLLR 244 (301)
Q Consensus 178 i~i~d~~--~~~~--~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~--~~~~~~~~~~ 244 (301)
|.++++. ++.. +..+... . ......++++|||+++| ++......|.+|++.. + +.+.......
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly----vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY----VSNRGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE----EEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE----EEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 9999988 4432 2222211 1 11477899999999743 4555678999999832 3 3344444445
Q ss_pred CCcEEEEEcCCCCEEEEeeC-CCcEEEEeC--CCceeeccccccccCccEEEEEE
Q 022184 245 KPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 245 ~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~ 296 (301)
...+.++++|+|++|+++.. ++.|.+|++ ++|.+........ -....++.|
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f 345 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF 345 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence 56899999999999999874 568999876 5676655432222 445667766
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.6e-15 Score=114.30 Aligned_cols=253 Identities=14% Similarity=0.152 Sum_probs=166.3
Q ss_pred EeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEE-ecCCcEE
Q 022184 10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK 88 (301)
Q Consensus 10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~d~~i~ 88 (301)
++|+|+ ++++|..... ++..-|.++-++. +.+ .--+.|.-+.|..|..+++++ ..++.|+
T Consensus 14 c~fSp~---g~yiAs~~~y---------rlviRd~~tlq~~------qlf-~cldki~yieW~ads~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 14 CSFSPC---GNYIASLSRY---------RLVIRDSETLQLH------QLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQ 74 (447)
T ss_pred eeECCC---CCeeeeeeee---------EEEEeccchhhHH------HHH-HHHHHhhheeeeccceeeeeeeeccceEE
Confidence 578888 7788874321 3333343332221 111 114568889999988877654 6688999
Q ss_pred EEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc
Q 022184 89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE 167 (301)
Q Consensus 89 ~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (301)
+|++...+--- ....+..++..++|||||+.| .+...+-.|.+|.+.+.+... ++-....+..++|+|||+
T Consensus 75 vwsl~Qpew~c-------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 75 VWSLVQPEWYC-------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred EEEeecceeEE-------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 99998776522 222356789999999999665 555668999999998876532 323334568899999999
Q ss_pred EEEEEeC------------------------------------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 168 FLATTST------------------------------------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 168 ~l~~~~~------------------------------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+.+.+++ +..+.+||.--.-.+..+. .+-.+..++|+|.++.
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQF 224 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccce
Confidence 8776653 1234455432222222222 2234788999999987
Q ss_pred ceEEEEEEeCCcceEEEEEccCceE-------------------------------------------------------
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNK------------------------------------------------------- 236 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~------------------------------------------------------- 236 (301)
++.|+.|+.+++.+--+++.
T Consensus 225 -----lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~ 299 (447)
T KOG4497|consen 225 -----LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ 299 (447)
T ss_pred -----EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence 78899999888865322111
Q ss_pred -----eeeee------ccCCCcEEEEEcCCCCEEEEeeCC--CcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 237 -----IGHKR------LLRKPASVLSISLDGKYLAMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 237 -----~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d--~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
+..++ .....+.-++|++|..++++-... +.+-+||++..++-..+.+ ..+|....|.|.
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---k~piraf~WdP~ 372 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---KHPIRAFEWDPG 372 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---ccceeEEEeCCC
Confidence 00001 112346679999999999988643 6799999999888777655 458999999985
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=1.1e-14 Score=109.81 Aligned_cols=261 Identities=13% Similarity=0.092 Sum_probs=169.4
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEecCC
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNG 85 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~ 85 (301)
|.-+.|..| .-++.++. ..++.+++|++.... -...++.-...+.+++|||||+.++ +...+-
T Consensus 51 i~yieW~ad---s~~ilC~~-----yk~~~vqvwsl~Qpe--------w~ckIdeg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 51 IVYIEWKAD---SCHILCVA-----YKDPKVQVWSLVQPE--------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred hhheeeecc---ceeeeeee-----eccceEEEEEeecce--------eEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence 445667766 33444433 366788999886433 2344566678899999999997655 666788
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--------------------------------
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------------------------------- 133 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------------------------- 133 (301)
+|.+|.+.+...... + .....+..++|+|||++.+..+..
T Consensus 115 riTVWSL~t~~~~~~------~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW 186 (447)
T KOG4497|consen 115 RITVWSLNTQKGYLL------P--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW 186 (447)
T ss_pred EEEEEEeccceeEEe------c--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence 999999987765111 1 122345788899999887765421
Q ss_pred ----CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE--------------------
Q 022184 134 ----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-------------------- 189 (301)
Q Consensus 134 ----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------------- 189 (301)
..+.+||-.-.-.+... ...-.+..++|+|.+++|+.|+.|+.+|+.+--+-+..
T Consensus 187 sPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 22333432111111111 11236888999999999999999999887653221100
Q ss_pred ----------------------------------------EEEeec-----CCCCeeEEEEccCCCcceEEEEEEe--CC
Q 022184 190 ----------------------------------------TFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQR--GD 222 (301)
Q Consensus 190 ----------------------------------------~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~--~~ 222 (301)
..++.. ....+..++|++|..+ +++. ..
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-----~aTrnd~~ 340 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-----AATRNDKY 340 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-----EeeecCCC
Confidence 000000 0113567899999986 3443 34
Q ss_pred cceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 223 ~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
-+.+.+||++..+.. ..-....+|....|+|....|+.+....++++|.......+.. ... .-.|..+.|+-+|.
T Consensus 341 PnalW~Wdlq~l~l~-avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~-GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLH-AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKK-GFNIQKLQWLQPGE 415 (447)
T ss_pred CceEEEEechhhhhh-hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCC-CceeeeEEecCCCc
Confidence 478999999876543 3334568899999999988888887778899999877555544 223 56789999987763
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.9e-14 Score=107.91 Aligned_cols=237 Identities=12% Similarity=0.171 Sum_probs=156.3
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEE-EEec
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTT 83 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~ 83 (301)
.+...++|+.| ..-+++|. +...+||..+|-...... .+....-.+..|-| -.++|+ +|+.
T Consensus 6 ~~~lsvs~NQD---~ScFava~-------~~Gfriyn~~P~ke~~~r------~~~~~G~~~veMLf--R~N~laLVGGg 67 (346)
T KOG2111|consen 6 PKTLSVSFNQD---HSCFAVAT-------DTGFRIYNCDPFKESASR------QFIDGGFKIVEMLF--RSNYLALVGGG 67 (346)
T ss_pred CceeEEEEccC---CceEEEEe-------cCceEEEecCchhhhhhh------ccccCchhhhhHhh--hhceEEEecCC
Confidence 45667999988 56666644 455699999984432211 11111122333333 234554 3333
Q ss_pred C------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecccccCC--
Q 022184 84 N------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAH-- 154 (301)
Q Consensus 84 d------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~-- 154 (301)
+ ..+.|||=..... ...+.-..+|.++.++++ .|++.- .+.|+||...+ .+.+..+....
T Consensus 68 ~~pky~pNkviIWDD~k~~~--------i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP 136 (346)
T KOG2111|consen 68 SRPKYPPNKVIIWDDLKERC--------IIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP 136 (346)
T ss_pred CCCCCCCceEEEEecccCcE--------EEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence 2 4799999332222 223334578999999776 566665 67899999873 34433333222
Q ss_pred ccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEE
Q 022184 155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYD 230 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d 230 (301)
..+.+++-+.+...||.-+ .-|.|+|-|+...+. ...+.. |...|.+++.+.+|.. +++++..|+ |+|||
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H~s~Iacv~Ln~~Gt~-----vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-HDSDIACVALNLQGTL-----VATASTKGTLIRIFD 210 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-ccCceeEEEEcCCccE-----EEEeccCcEEEEEEE
Confidence 2343333333444565544 568999999986655 244444 4557999999999997 788888776 78999
Q ss_pred ccCceEeeeeecc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 231 ISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 231 ~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
..+++.+.+++.. ...|.+++||||+.+||+++..|+++||.++..
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999998777543 357999999999999999999999999998763
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=5e-13 Score=108.45 Aligned_cols=255 Identities=16% Similarity=0.224 Sum_probs=165.6
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec----CCcEEEEEEcCCccccccccccCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPP 108 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~~ 108 (301)
..+.|.++.+|.....+..... .........++++|++++|.++.. ++.|..|++..............
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~-----~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-- 83 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQT-----VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-- 83 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEE-----EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred CCCcEEEEEEcCCCCCceEeee-----ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence 4477889999887776643111 113455778999999999998876 47899999987522222211110
Q ss_pred CCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCC-cceecc--cc-----------cCCccEEEEEecCCCcEEEEEe
Q 022184 109 LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRIILD--EP-----------KAHKSVLDMDFSLDSEFLATTS 173 (301)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~-~~~~~~--~~-----------~~~~~i~~~~~~~~~~~l~~~~ 173 (301)
........++++|++++|+++.. +|.|.++++.. +..... .. .......++.++|+++++++..
T Consensus 84 -~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 84 -SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp -ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred -cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 02345578999999999988874 89999999976 332111 11 1224578999999999888765
Q ss_pred -CCCcEEEEeCCCCc--e--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--CceE--eeeeecc-
Q 022184 174 -TDGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL- 243 (301)
Q Consensus 174 -~d~~i~i~d~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~--~~~~~~~- 243 (301)
....|.+|++.... . ...+..+.....+.++|+|+++++| +....++.|.++++. ++.. +......
T Consensus 163 lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 163 LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 34579999997654 3 2334445555689999999999743 456678899999988 4322 2222211
Q ss_pred -----CCCcEEEEEcCCCCEEEEee-CCCcEEEEeCC--Cce--eeccccccccCccEEEEEEccCCC
Q 022184 244 -----RKPASVLSISLDGKYLAMGS-KDGDICVVDVK--KME--INHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 244 -----~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~--~~~--~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
......++++|||++|+++. .++.|.+|++. +++ .+..+. .. ....+.++++|||+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~-G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TG-GKFPRHFAFSPDGR 304 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ES-SSSEEEEEE-TTSS
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CC-CCCccEEEEeCCCC
Confidence 12578899999999988876 45689999993 233 233332 12 34589999999986
No 234
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=4.6e-16 Score=113.62 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=129.8
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 81 (301)
.+.++|..|-.+-+..-+++.|- .++.+.+|+.+..+..+.. ..........|..+|.++.+.+.-..=+++
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGy------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGY------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred cCceeeeeccccccceEEEEEec------cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 46688888765543333444433 6677899999876443321 223344456799999999999876677788
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
+.+..+..|+++........... .. -.+..+..+..-||++.+|+++.|+.|+||+.++.+++..+..|...|.+++
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e--~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKE--IT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA 300 (323)
T ss_pred CccccceeeeeccccCcccccce--EE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE
Confidence 88888999998755332211110 01 1235688899999999999999999999999999999999989999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeC
Q 022184 162 FSLDSEFLATTSTDGSARIWKT 183 (301)
Q Consensus 162 ~~~~~~~l~~~~~d~~i~i~d~ 183 (301)
|+|+.+.+|.++.|++|.+|++
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999986
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.5e-15 Score=121.44 Aligned_cols=275 Identities=15% Similarity=0.150 Sum_probs=189.5
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCC-------ceeccccccCCcceEEEECCC
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNPS 74 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~ 74 (301)
+...+..|++|+.. ..++|+|| .+|.+++..++..+......+ ...+.+.||++.|.-+.|+.+
T Consensus 12 PnnvkL~c~~WNke---~gyIAcgG------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKE---SGYIACGG------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CCCceEEEEEEccc---CCeEEecc------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence 45678899999977 67999988 777889999887665544333 335678999999999999999
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 154 (301)
.+.|-++..+|.|.+|-+-.+.-...... ....+-|.+++|+.||..|+....||.|.+=.++..+. ....-..
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiN-----nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg 156 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMIN-----NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKG 156 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhh-----CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcch
Confidence 99999999999999999987764322221 12346789999999999999999999998877654332 2111112
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-------ceEEEEee---cCCCCeeEEEEc--------cCCCcceEEE
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLTR---NSDEKIELCRFS--------KDGTKPFLFC 216 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~---~~~~~v~~~~~~--------~~~~~~~~~~ 216 (301)
.....+.|++|.+.++.+-.+|.+.+||.... .+.....+ ..+..+..+.|. |+...
T Consensus 157 ~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~----- 231 (1189)
T KOG2041|consen 157 QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR----- 231 (1189)
T ss_pred heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-----
Confidence 24557889999999988889999999997532 11111111 112234455553 34444
Q ss_pred EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---------CcEEEEeCCCceeecccccccc
Q 022184 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRLHL 287 (301)
Q Consensus 217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~~~~~~~~~~~~~~~~~ 287 (301)
++..-.+|.+.+..-.+......+ .....+..+.|+++|..|++++.+ +.|++|.. -|+.+..+. ..
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vp- 307 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VP- 307 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEe-cC-
Confidence 455666777777654443322222 223567889999999999999864 35666654 455555553 33
Q ss_pred CccEEEEEEccCC
Q 022184 288 GTSIALVEFCPTQ 300 (301)
Q Consensus 288 ~~~v~~~~~spdg 300 (301)
...|++++|-..|
T Consensus 308 g~~It~lsWEg~g 320 (1189)
T KOG2041|consen 308 GSCITGLSWEGTG 320 (1189)
T ss_pred CceeeeeEEcCCc
Confidence 6789999886543
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.9e-15 Score=119.90 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=165.9
Q ss_pred ccCCcceEEEECCCCCeEE-EEecCCcEEEEEEcCCccccc---------c--cc-----------ccC----------C
Q 022184 61 ESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDIN---------L--LA-----------KKM----------P 107 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~~~---------~--~~-----------~~~----------~ 107 (301)
+|...-+.|..+|||+|++ +|..-..|++||+..-..... + +. ... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4677788999999999876 555678999999976543100 0 00 000 0
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (301)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 187 (301)
.+.....-..++++.-..-|+.++....|+-++++.|.-+..+....+.++++..++-..+|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 00001223455555433345555556778889999999887777666899999999999999999999999999999887
Q ss_pred eEEEEeecCC----------CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee-eccCCCcEEEEEcCC-
Q 022184 188 AWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLD- 255 (301)
Q Consensus 188 ~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~- 255 (301)
.+..+..... ..|+++.|+.+|-. ++.|..+|.+.+||+++.+++... ....-+|..+.|.+.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 7666543211 24899999999877 788999999999999998876432 223457889999775
Q ss_pred -CCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 256 -GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 256 -~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
++.+++.. ...++|||-.+|+....+.. ...++.+++-|++
T Consensus 284 ~q~~v~S~D-k~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 284 QQNKVVSMD-KRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred CCceEEecc-hHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 34555553 46899999999998887754 4468888888774
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=3.1e-14 Score=119.22 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=129.7
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|.++|...... .....+...+...+|+|||++|+.+..+ ..|++||+.+++... +......+..++|
T Consensus 171 ~l~~~d~~g~~~--------~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGANP--------QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCCCCC--------EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence 577777654332 1112234567888999999999887644 479999998876532 3334455677899
Q ss_pred cCCCcEEEE-EeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC--CcceEEEEEccCceEe
Q 022184 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI 237 (301)
Q Consensus 163 ~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~ 237 (301)
+||++.|+. .+.++ .|.+||+.++.... +..+ ........|+|+|+.++ +... ....|.++|+.+++..
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~~s~dg~~l~----~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNG-PGIDTEPSWSPDGKSIA----FTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCC-CCCCCCEEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence 999997764 44444 58889988775433 3322 23345678999999732 2222 2346888888876543
Q ss_pred eeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.+.........+.|+|+|++++.++.++ .|.+||+.++....... .......+|+|||+
T Consensus 316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~ 377 (417)
T TIGR02800 316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGR 377 (417)
T ss_pred -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCC
Confidence 3443455667889999999999988775 79999998865443321 12234568999985
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.66 E-value=3.2e-14 Score=107.95 Aligned_cols=252 Identities=14% Similarity=0.179 Sum_probs=162.1
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceecccccc------------CCcceEEEECC
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES------------EGDPMTIAVNP 73 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~~ 73 (301)
-|.++.|... +.++|+|.+++.+ .++.-+..... .......++.| ...|..+.|.+
T Consensus 27 iis~vef~~~---Ge~LatGdkgGRV------v~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 27 IISAVEFDHY---GERLATGDKGGRV------VLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred ceeeEEeecc---cceEeecCCCCeE------EEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 4678888877 7899999866543 44433322210 00011112222 34599999998
Q ss_pred CCC--eEEEEecCCcEEEEEEcCCccccc-----------------cc------------cccCCCCCCCCCeeEEEEee
Q 022184 74 SGD--DFVCSTTNGGCKLFEVYGGATDIN-----------------LL------------AKKMPPLQDAGPQKCLSFSV 122 (301)
Q Consensus 74 ~~~--~l~~~~~d~~i~~w~~~~~~~~~~-----------------~~------------~~~~~~~~~~~~v~~~~~s~ 122 (301)
+++ .++..+.|.+|++|.+........ ++ .+..-.-.|.--|++++++.
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 665 666777999999999975443210 00 00111123455688999999
Q ss_pred CCCEEEEeecCCeEEEEeCCCcce---ecccccCC-----ccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEE--
Q 022184 123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTF-- 191 (301)
Q Consensus 123 ~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-- 191 (301)
|...++++. |=.|.+|+++-... +..+..+. .-|++..|+| ..+.|+-.+..|+|++-|+|.....-.
T Consensus 175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 999888876 78899999853222 22222222 2488899999 456788888899999999995432111
Q ss_pred --EeecC-----------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc-CceEeeeeeccC------------C
Q 022184 192 --LTRNS-----------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLR------------K 245 (301)
Q Consensus 192 --~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~------------~ 245 (301)
+..+. -..|..+.|+++|++ +++.. =-+|++||+. ..+++.....|. .
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGry-----ilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----ILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 11100 124788999999997 44433 3589999984 444555555443 1
Q ss_pred C---cEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 246 P---ASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 246 ~---v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
. -..++|+.++.++++|+..+.+++|++..+
T Consensus 328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred chhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 245789999999999999999999996554
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.1e-14 Score=118.10 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=126.8
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|.++|.++... .....+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+......|
T Consensus 180 ~l~~~d~~g~~~--------~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARA--------VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCc--------eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence 366666665432 1112345678899999999999876643 469999998876532 3333344557899
Q ss_pred cCCCcEEEE-EeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 163 ~~~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
+|||+.|+. .+.++ .|.+||+.+++... +..+ ........|+|||+.+++ .........|.++|+.+++...
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~-~~~~~~~~~spDg~~i~f--~s~~~g~~~iy~~d~~~g~~~~- 325 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNH-PAIDTEPFWGKDGRTLYF--TSDRGGKPQIYKVNVNGGRAER- 325 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccC-CCCcCCeEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence 999998774 44454 58888998876543 3322 234567889999997322 1111223468888887776432
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+...........|+|||++|+..+.++ .|.++|+.+++....... .......|+|||+
T Consensus 326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~----~~~~~p~~spdg~ 386 (430)
T PRK00178 326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT----SLDESPSVAPNGT 386 (430)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC----CCCCCceECCCCC
Confidence 222223344678999999998876542 588999988865443321 1223568999986
No 240
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5.9e-12 Score=96.64 Aligned_cols=274 Identities=10% Similarity=0.149 Sum_probs=173.8
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT- 83 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~- 83 (301)
+..+-++|+++ .+.+.++.. .+.++.+..|.+|++...+.. .....+.+ .+...++++++|++++++..
T Consensus 40 ~nptyl~~~~~---~~~LY~v~~---~~~~ggvaay~iD~~~G~Lt~--ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 40 GNPTYLAVNPD---QRHLYVVNE---PGEEGGVAAYRIDPDDGRLTF--LNRQTLPG--SPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred CCCceEEECCC---CCEEEEEEe---cCCcCcEEEEEEcCCCCeEEE--eeccccCC--CCCeEEEECCCCCEEEEEEcc
Confidence 34566788876 434444332 124778899999998665532 11222332 23488999999999998875
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCC----------CCeeEEEEeeCCCEEEEeec-CCeEEEEeCCCcceeccc--
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDA----------GPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE-- 150 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~-- 150 (301)
.|.|.++.++........ .....|. ..+....+.|++++|++..- --.|.+|++..++.....
T Consensus 110 ~g~v~v~p~~~dG~l~~~----v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 110 SGSVSVYPLQADGSLQPV----VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred CceEEEEEcccCCccccc----eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 488999999764322211 1111222 22788999999999988753 346999999876643221
Q ss_pred -ccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCC-ceEEEEee--------cCCCCeeEEEEccCCCcceEEEEEE
Q 022184 151 -PKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQ 219 (301)
Q Consensus 151 -~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (301)
.......+.|.|+|++++..... -+++|.+|..... ..+..++. ........+..+|||++++ ++
T Consensus 186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY----as 261 (346)
T COG2706 186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY----AS 261 (346)
T ss_pred ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE----Ee
Confidence 12234678999999999776655 6899999998763 22232221 1123567899999999743 33
Q ss_pred eCCcceEEEEEccC--ceE--eeeeeccCCCcEEEEEcCCCCEEEEeeCC-CcEEEEeCC--CceeeccccccccCccEE
Q 022184 220 RGDKALLAVYDIST--WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVVDVK--KMEINHWSKRLHLGTSIA 292 (301)
Q Consensus 220 ~~~~~~i~~~d~~~--~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~--~~~~~~~~~~~~~~~~v~ 292 (301)
......|.+|.+.. ++. +.....+....+.+.++|.|++|+++..+ ..|.+|..+ +|++-....... .....
T Consensus 262 NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pv 340 (346)
T COG2706 262 NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPV 340 (346)
T ss_pred cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcE
Confidence 33344788887653 322 22233344557899999999999999876 458888765 565544433233 34455
Q ss_pred EEEEc
Q 022184 293 LVEFC 297 (301)
Q Consensus 293 ~~~~s 297 (301)
++.|.
T Consensus 341 cv~f~ 345 (346)
T COG2706 341 CVKFL 345 (346)
T ss_pred EEEEc
Confidence 67664
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=3.3e-14 Score=123.82 Aligned_cols=226 Identities=11% Similarity=0.082 Sum_probs=158.0
Q ss_pred CCceeccccccCCcceEEEECCCC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEe
Q 022184 52 SPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG 130 (301)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 130 (301)
.......+..|...|..++.++.. .++++|+.||+|++|+...-..................++.++...+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 344556788899999999988755 8999999999999999976554322111111222245788999999999999999
Q ss_pred ecCCeEEEEeCCCcce-------ecccccCC-ccE-EEEEecC-CCc-EEEEEeCCCcEEEEeCCCCceEEEEee-cCCC
Q 022184 131 GVDGHLRIMHWPSLRI-------ILDEPKAH-KSV-LDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDE 198 (301)
Q Consensus 131 ~~dg~i~v~d~~~~~~-------~~~~~~~~-~~i-~~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~ 198 (301)
+.||.|++.+++..+. .+....+. +.+ ..-+|.. ... .++.+..-+.|..||++.......++. ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999865211 11111111 233 3333433 233 678888889999999998776555432 1234
Q ss_pred CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccCCCcEEEEEcCC---CCEEEEee--CCCcEEEEe
Q 022184 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDICVVD 272 (301)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~d~~i~i~~ 272 (301)
.|++++.+|.+.+ ++.|...|.+.+||++=+.++.... .+..++..+..+|- ....++++ ..+.|.+|+
T Consensus 1197 ~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 6999999999998 7899999999999999777664432 33467777777663 34555554 467899999
Q ss_pred CCCceeeccc
Q 022184 273 VKKMEINHWS 282 (301)
Q Consensus 273 ~~~~~~~~~~ 282 (301)
+.+|...+.+
T Consensus 1272 ~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1272 METGLRQTVL 1281 (1431)
T ss_pred cccCcceEEE
Confidence 9998655544
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.1e-13 Score=115.89 Aligned_cols=198 Identities=16% Similarity=0.112 Sum_probs=123.1
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC---CeEEEEeCCCcceecccccCCccEEEEEe
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 162 (301)
.|.++|.+..... ....+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|
T Consensus 199 ~l~i~d~dG~~~~--------~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNEQ--------MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCce--------EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeE
Confidence 4666676554321 112244577889999999998876543 368889998776532 2222233457899
Q ss_pred cCCCcEEEE-EeCCCc--EEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 163 SLDSEFLAT-TSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 163 ~~~~~~l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
+|||+.|+. .+.++. |.++|+.+++... +..+ .......+|+|||+.+++ .........|.++|+.+++...
T Consensus 270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~-~~~~~~p~wSpDG~~I~f--~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 270 SPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRH-RAIDTEPSWHPDGKSLIF--TSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccC-CCCccceEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence 999997765 455664 7788888776433 3322 234567899999997422 1111233567778887766432
Q ss_pred eeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 240 KRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 240 ~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+..........+|+|||++|+..+.+ + .|.++|+.+++...... .. ......|+|||+
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-~~---~d~~ps~spdG~ 405 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-TR---LDESPSVAPNGT 405 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-CC---CCCCceECCCCC
Confidence 22222333457899999998887653 3 46667888876544321 11 123457999985
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.2e-13 Score=113.25 Aligned_cols=227 Identities=17% Similarity=0.113 Sum_probs=133.2
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-C
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N 84 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d 84 (301)
+...=+|+||.....++.+.... +.-+||..+..+.... .+....+.....+|+|||+.|+..+. +
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~------g~~~I~~~~l~~g~~~-------~lt~~~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKL------GVPKIFLGSLENPAGK-------KILALQGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred CcccceEccCCCceEEEEEEccC------CCceEEEEECCCCCce-------EeecCCCCccceEECCCCCEEEEEECCC
Confidence 44555799884322233343322 2236777766553221 12223444567899999999887653 2
Q ss_pred C----cEEEEEEcCCc--cccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cCCeEEEE--eCCC-cceecccccCC
Q 022184 85 G----GCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIM--HWPS-LRIILDEPKAH 154 (301)
Q Consensus 85 ~----~i~~w~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~v~--d~~~-~~~~~~~~~~~ 154 (301)
| .+.+|++..+. ....+.. .........+|+|||+.|+..+ .+|...+| ++.. +.....+....
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~ 326 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLN------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY 326 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeec------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence 3 23346665431 1111110 0112335679999999887765 45654444 4432 22233343344
Q ss_pred ccEEEEEecCCCcEEEEEeCC---CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184 155 KSVLDMDFSLDSEFLATTSTD---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 231 (301)
..+....|+|||+.|+..+.+ ..|.+||+.+++... +... ...+....|+|||+.+++ .........|.++|+
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f--~~~~~g~~~L~~vdl 402 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVY--SAGNSNESELYLISL 402 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEE--EECCCCCceEEEEEC
Confidence 566788999999988877643 369999998887643 3322 234678999999997432 223334568999999
Q ss_pred cCceEeeeeeccCCCcEEEEEcCCC
Q 022184 232 STWNKIGHKRLLRKPASVLSISLDG 256 (301)
Q Consensus 232 ~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (301)
.+++... +....+.+...+|+|-.
T Consensus 403 ~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 403 ITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCEEE-eecCCCcccCceecCCC
Confidence 8776543 33344556778898753
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.4e-15 Score=119.12 Aligned_cols=161 Identities=15% Similarity=0.209 Sum_probs=123.7
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-ccCCccEEEEEecC--CCcEEEEEeCCCcEEEEeCC
Q 022184 108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTE 184 (301)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~ 184 (301)
...|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+++++|..|..|+++|+.
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 3468899999999999999999999999999998766665554 46668999999999 56689999999999999997
Q ss_pred CC----------ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe----------eeeeccC
Q 022184 185 DG----------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----------GHKRLLR 244 (301)
Q Consensus 185 ~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~ 244 (301)
.. +....+..| ...|..++-.|++.+. +.++++||+|+-||++....- ..+...-
T Consensus 126 ~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred cccccccccCccchhhhhhhh-hhhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 42 122223333 3468889999999763 588899999999999863211 0111111
Q ss_pred CCcEEEEEcCC-CCEEEEeeCCCcEEEEeC
Q 022184 245 KPASVLSISLD-GKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 245 ~~v~~~~~s~~-~~~l~~~~~d~~i~i~~~ 273 (301)
-...++..+|. ..+|++|+.|-..++||.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 24567889995 578999999999999994
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.4e-13 Score=109.83 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=143.5
Q ss_pred EEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-----
Q 022184 78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP----- 151 (301)
Q Consensus 78 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----- 151 (301)
|++++....|+-++++.+.. +..+. ..+.++++..++-..+|++|+.+|.|..||.+....+..+.
T Consensus 148 ly~~gsg~evYRlNLEqGrf--------L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRF--------LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred EEEeecCcceEEEEcccccc--------ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 44444445588888887765 33333 23789999999988899999999999999998765443322
Q ss_pred -cCC-----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 152 -KAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 152 -~~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
.+. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-......+|..+.|.+.+... .+...+...
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~----~v~S~Dk~~ 295 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN----KVVSMDKRI 295 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc----eEEecchHH
Confidence 122 2499999999999999999999999999999999887776666789999998774332 345566778
Q ss_pred EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
++|||-.+++....+.. ...+..+|+-|++-+++++-.+..+..|=+..
T Consensus 296 ~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 99999999998766654 45589999999999999999888888776654
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.5e-14 Score=113.13 Aligned_cols=268 Identities=15% Similarity=0.142 Sum_probs=189.4
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC--CCCeEEEE
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCS 81 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~ 81 (301)
.+.|..+.|+.. +..++.|+ .+-.+.+|+|......+. -..+|...|....|-| +.+.++++
T Consensus 142 ~GcVntV~FN~~---Gd~l~SgS------DD~~vv~WdW~~~~~~l~-------f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 142 KGCVNTVHFNQR---GDVLASGS------DDLQVVVWDWVSGSPKLS-------FESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred CCccceeeeccc---CceeeccC------ccceEEeehhhccCcccc-------cccccccchhhhhccCCCCCcCceec
Confidence 466778888866 56777765 556678999976654432 2468999999999988 44589999
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-CCEEEEeecCCeEEEEeCCCcceecccc---cCCc--
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHK-- 155 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~-- 155 (301)
+.||.+++=.+......... ....+|.++|..++.-|+ ...|.+++.|+.+.-+|+++..+...+. .+..
T Consensus 206 s~dgqvr~s~i~~t~~~e~t----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENT----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cccCceeeeeeccccceecc----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 99999999887654432211 223358899999999995 4568999999999999998765533322 2222
Q ss_pred -cEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCce------EEEEee-----cCCCCeeEEEEccCCCcceEEEEEEeCC
Q 022184 156 -SVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGD 222 (301)
Q Consensus 156 -~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 222 (301)
....++.+|... .+++++.|..+++||.+.-.. +..+.. .....|++++|+.++.. +.++-.
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSYn 356 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASYN 356 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeeec
Confidence 577899999655 899999999999999875321 122221 22345899999988877 566667
Q ss_pred cceEEEEEccC--c----------eEee-eeeccCC--CcEEEE-EcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 223 KALLAVYDIST--W----------NKIG-HKRLLRK--PASVLS-ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 223 ~~~i~~~d~~~--~----------~~~~-~~~~~~~--~v~~~~-~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
|-.|+++.... + ..+. .+++|.. .|-.+- |-|...|+++|+.=|.|.||+-.++++++.+...
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD- 435 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD- 435 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-
Confidence 77899985332 1 1112 2566653 355555 4788899999999999999999999998877533
Q ss_pred cCccEEEEEEcc
Q 022184 287 LGTSIALVEFCP 298 (301)
Q Consensus 287 ~~~~v~~~~~sp 298 (301)
..-|+|+.=+|
T Consensus 436 -r~VVNCLEpHP 446 (559)
T KOG1334|consen 436 -RHVVNCLEPHP 446 (559)
T ss_pred -cceEeccCCCC
Confidence 34777776554
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=6.3e-14 Score=120.15 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=151.9
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc
Q 022184 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR 145 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~ 145 (301)
|....+..+..+++.+..++.+.+||........+........+ ....-+.++++.-++++|+.-+.|.+|+....+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l---~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL---YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE---EeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 44444455667888888889999999987665322221111000 122233456667789999999999999987444
Q ss_pred eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
....+.+|.+.|.++.|+-||.++++.|+|.++++|++.+.+.....-..|..++..+.|.|+ . +++++.|.+
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~-----i~t~gedct 239 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R-----IITVGEDCT 239 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e-----eEEeccceE
Confidence 434577899999999999999999999999999999999988776333445678999999999 3 799999999
Q ss_pred EEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 226 LAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
.++|+... +.+..+..|. ..+..++..++...+++++.|+.+++|++..
T Consensus 240 crvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99997654 4444566654 5799999999999999999999999999864
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=2.4e-12 Score=102.08 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=112.8
Q ss_pred ccCCcceEEEECCCCCeEEEEecCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
+|.+.|.-..+..+++-++.|..|| .+-++|.++++.. .....-+.|.++..+|+|++++.+.....+.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k--------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK--------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE--------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 5777899999988888899999998 8999999988752 122344789999999999999999999999999
Q ss_pred eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
|+.+++....-....+-|+.++|+|+++++|-+--+| .|+++|+..++....... .. .-.+-+|.|+++++++
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta-~DfsPaFD~d~ryLYf 505 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TA-YDFSPAFDPDGRYLYF 505 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cc-cccCcccCCCCcEEEE
Confidence 9999987554445557899999999999999877665 699999988776554432 11 1345677777776554
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.56 E-value=2.4e-11 Score=96.62 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=139.7
Q ss_pred ECCCCCeEEEEec----------CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-c-CCeEEE
Q 022184 71 VNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRI 138 (301)
Q Consensus 71 ~~~~~~~l~~~~~----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~-dg~i~v 138 (301)
++||++.|+++.. +..|.+||..+.+...++.....+.+........++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998876654 688999999998875554432221212233445789999999998776 3 689999
Q ss_pred EeCCCcceecccccCC------------------c-------------cEEEE--------------EecC-CCcEEEEE
Q 022184 139 MHWPSLRIILDEPKAH------------------K-------------SVLDM--------------DFSL-DSEFLATT 172 (301)
Q Consensus 139 ~d~~~~~~~~~~~~~~------------------~-------------~i~~~--------------~~~~-~~~~l~~~ 172 (301)
.|+.+++.+..+.... + ..... .|.+ +|+++...
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9998776543221100 0 00111 1233 66666665
Q ss_pred eCCCcEEEEeCCCC-----ceEEEEeec------CCCCeeEEEEccCCCcceEEEEEEe-----CCcceEEEEEccCceE
Q 022184 173 STDGSARIWKTEDG-----VAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQR-----GDKALLAVYDISTWNK 236 (301)
Q Consensus 173 ~~d~~i~i~d~~~~-----~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~d~~~~~~ 236 (301)
.. |+|.+.|+... +....+... .......++++|+++++|+++.--+ ...+.|.++|..+++.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 55 99999996443 222222111 1223445999999998654221000 1225899999999998
Q ss_pred eeeeeccCCCcEEEEEcCCCC-EEEEee-CCCcEEEEeCCCceeeccc
Q 022184 237 IGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~~~~~~~~~~~~ 282 (301)
+..+.. ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus 292 i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 292 LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 887765 56789999999999 887776 5788999999999988876
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.7e-11 Score=90.64 Aligned_cols=255 Identities=16% Similarity=0.234 Sum_probs=166.0
Q ss_pred cCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec---CCcEEEEEEcCCccccccccccCCCCC
Q 022184 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
...|.+|.++.....+.. ..+-.+.+.++-++|+|+++.|.++-. +|.|-.|.++.......+..+.. .
T Consensus 15 s~gI~v~~ld~~~g~l~~-----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~- 86 (346)
T COG2706 15 SQGIYVFNLDTKTGELSL-----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L- 86 (346)
T ss_pred CCceEEEEEeCcccccch-----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c-
Confidence 556789999866654422 234456788999999999999988754 47888998886433233322211 1
Q ss_pred CCCCeeEEEEeeCCCEEEEeec-CCeEEEEeCCC-cceec--ccccCCc----------cEEEEEecCCCcEEEEEeC-C
Q 022184 111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPS-LRIIL--DEPKAHK----------SVLDMDFSLDSEFLATTST-D 175 (301)
Q Consensus 111 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d~~~-~~~~~--~~~~~~~----------~i~~~~~~~~~~~l~~~~~-d 175 (301)
...+...+++++++++++++.. .|.|.++-++. |.... ....|.+ .+....+.|++++|++..- -
T Consensus 87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 1233388999999999998875 58999998865 32211 1122222 2788899999999998873 3
Q ss_pred CcEEEEeCCCCceEEE--EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc-eEeeeeec---------c
Q 022184 176 GSARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRL---------L 243 (301)
Q Consensus 176 ~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~---------~ 243 (301)
..|.+|++..++.... .....+...+-+.|+|+++..| +..--+++|.+|..... ..+..++. .
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY----~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY----LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE----EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 4799999997765322 1123344578999999999754 34456788999988763 12222211 1
Q ss_pred CCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCC--ceeecccc-ccccCccEEEEEEccCCC
Q 022184 244 RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWSK-RLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~--~~~~~~~~-~~~~~~~v~~~~~spdg~ 301 (301)
......+..+|||++|+++.. ...|.+|.+.. +++..... ..+ ....+.+.|+|+|+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~g~ 303 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPSGR 303 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCCCC
Confidence 245678899999999999853 24788888763 33222111 122 33467777777764
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=106.02 Aligned_cols=192 Identities=17% Similarity=0.146 Sum_probs=148.4
Q ss_pred CCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEe--------------------eCCCEEEEee
Q 022184 72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS--------------------VDGSRFAAGG 131 (301)
Q Consensus 72 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------------------~~~~~l~~~~ 131 (301)
.|...++|....||.+++|+...++....+.. ...-.+...+..|. .|-..++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc----chhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 34567999999999999999998876433321 11122334444442 1223677788
Q ss_pred cCCeEEEEeCCCcceecccc--cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184 132 VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (301)
..|.|.+|+...++...++. .|.+.|.++.++.+-..|.+++.|..+..|+...+..++.+..... .+.+++.+|||
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~ 156 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDG 156 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCC
Confidence 89999999999988776665 4667999999999999999999999999999999998888876654 58999999998
Q ss_pred CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC-----CCEEEEe-eCCCcEEEEeCCC
Q 022184 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMG-SKDGDICVVDVKK 275 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~-~~d~~i~i~~~~~ 275 (301)
.. +++++ ++|++||+++.+.+..+.+|.++|++++|-.+ |.++.++ ..+.-+.+|-+..
T Consensus 157 ~~-----l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KI-----LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CE-----EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 86 44444 47999999999999999999999999999776 6666554 4455677777654
No 252
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=7.9e-12 Score=103.34 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=125.4
Q ss_pred cceEEEECCCCCe-EEEEecC---CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-c--CCeEE
Q 022184 65 DPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-V--DGHLR 137 (301)
Q Consensus 65 ~v~~~~~~~~~~~-l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~--dg~i~ 137 (301)
......|+|||+. ++..+.+ ..|+++|+.+++.... ....+......|+|||+.++... . +..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--------t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--------ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE--------ecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 6788999999985 6644433 5688888877654111 11234456678999998776543 2 35788
Q ss_pred EEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
++|+.+++. ..+..+........|+|||+.|+..+. .+ .|.+.|+.+++........ . ....|+|+|+.+.+
T Consensus 261 ~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPDG~~Ia~ 335 (419)
T PRK04043 261 LYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTYKNYIVY 335 (419)
T ss_pred EEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCCCCEEEE
Confidence 888877764 334333333345689999998777663 23 5888888877764433221 1 12489999998432
Q ss_pred EEEEEeC------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC---cEEEEeCCCceeec
Q 022184 215 FCTVQRG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINH 280 (301)
Q Consensus 215 ~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~~~~~~~~~~ 280 (301)
. .... ....|.+.|+.+++.. .+... .......|+|||+.|+..+.++ .+.+.++.......
T Consensus 336 ~--~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 336 S--SRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred E--EcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 1 1111 1147899999887653 23322 2334589999999888776442 47777886654443
No 253
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.54 E-value=1.1e-11 Score=98.42 Aligned_cols=245 Identities=19% Similarity=0.159 Sum_probs=168.4
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCc--ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD--PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
.++.-++|+.+..++.+ +.|+.- -.+-..+.||+.++.. ..|.|.+||.++.....--.........
T Consensus 244 ~eG~GnlYSvdldGkDl----------rrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~ 312 (668)
T COG4946 244 HEGVGNLYSVDLDGKDL----------RRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKK 312 (668)
T ss_pred ccCccceEEeccCCchh----------hhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCcccccc
Confidence 44555777777766554 233321 2233346789888764 6678999999876652221110010000
Q ss_pred ----CCCCeeEEE-Eee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCC-cEEEEeC
Q 022184 111 ----DAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKT 183 (301)
Q Consensus 111 ----~~~~v~~~~-~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~ 183 (301)
...+..-+. |++ +|.+++..+ .|...+.+...+-.++ + ++.+.|.-..+.-+++-++.|..|| .+-|+|.
T Consensus 313 k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~ 389 (668)
T COG4946 313 KQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK 389 (668)
T ss_pred ccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEec
Confidence 011222222 555 788998888 5778887765554432 2 4555688788888888899999999 8999999
Q ss_pred CCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184 184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
++++...... .- +.|.++..+|+|++ ++.+.....|.+.|+.+++....-+...+-|+.+.|||+++++|.+-
T Consensus 390 ~~~e~kr~e~-~l-g~I~av~vs~dGK~-----~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 390 DGGEVKRIEK-DL-GNIEAVKVSPDGKK-----VVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred CCceEEEeeC-Cc-cceEEEEEcCCCcE-----EEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence 8887544333 33 35999999999998 68888889999999999987655555667899999999999999986
Q ss_pred CCC----cEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 264 KDG----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 264 ~d~----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
-+| .|+++|+..++...... . .+.-.+.+|.|||+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT--~-ta~DfsPaFD~d~r 501 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTT--P-TAYDFSPAFDPDGR 501 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecC--C-cccccCcccCCCCc
Confidence 665 69999999988776542 1 33455678888875
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=105.41 Aligned_cols=169 Identities=18% Similarity=0.123 Sum_probs=138.5
Q ss_pred eCCCEEEEeecCCeEEEEeCCCcceecccccCC---ccEEEEEec------C--------------CCcEEEEEeCCCcE
Q 022184 122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFS------L--------------DSEFLATTSTDGSA 178 (301)
Q Consensus 122 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~------~--------------~~~~l~~~~~d~~i 178 (301)
|...++|....||.+++|+...++....+.... +..++..|. | |-..++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345688999999999999998877654443211 233333332 2 23367778889999
Q ss_pred EEEeCCCCceEEEEe-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC
Q 022184 179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK 257 (301)
Q Consensus 179 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 257 (301)
.+|+...++....+. ..+.+.|.++.++.+-.. +.+++.|+.+..|+......+......+..+.+++.+|||+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999999888886 566778999998888776 79999999999999999998888888888999999999999
Q ss_pred EEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 258 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.+++++ +.|++||+++++.+..+ .+| .++|++++|.-+
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTL 195 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEe
Confidence 999997 47999999999999988 789 999999999764
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.7e-12 Score=100.20 Aligned_cols=212 Identities=10% Similarity=0.043 Sum_probs=149.1
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeE-EEEecC--CcEEEEEEcCCccccccccccCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTN--GGCKLFEVYGGATDINLLAKKMPPL 109 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d--~~i~~w~~~~~~~~~~~~~~~~~~~ 109 (301)
.+|.+++|........ ..+.. .+.. ...+..+.-++..+++ ++|+.. ..+.+||++..+....-.......+
T Consensus 123 ~sG~l~~~~~k~~d~h--ss~l~--~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLH--SSKLI--KLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred cCCcEEEEeccCCccc--cccce--eeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 4566677776533311 11111 1221 2456667777755555 558877 7899999988754322221111111
Q ss_pred C--CCCCeeEEEEeeC--CCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184 110 Q--DAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (301)
Q Consensus 110 ~--~~~~v~~~~~s~~--~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 184 (301)
. ..-.++++.|-+. ...|++++.-+.+++||.+.+. ++..+.-...+++++...|++++++++..-+.+..||++
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 1 2234678889886 7889999999999999998654 455555556799999999999999999999999999999
Q ss_pred CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCC
Q 022184 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 255 (301)
.++..........+.++++..+|.++. +++++-|..|+|+|+++.+.+.... .+..++++-+.++
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~-----las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPV-----LASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCce-----EEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 999887744455567999999999997 7999999999999999866553322 2455677777554
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=9.1e-12 Score=100.50 Aligned_cols=202 Identities=12% Similarity=0.139 Sum_probs=134.3
Q ss_pred cCCcceEEEECCCCC--eEEE-----EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEE-EEeec-
Q 022184 62 SEGDPMTIAVNPSGD--DFVC-----STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGV- 132 (301)
Q Consensus 62 h~~~v~~~~~~~~~~--~l~~-----~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~- 132 (301)
|...|..+.++|.+. .+|+ .+.-..++||............ ....+ ...-..+.|++-|+-| +.++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a--~ksFF--kadkvqm~WN~~gt~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA--NKSFF--KADKVQMKWNKLGTALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh--hcccc--ccceeEEEeccCCceEEEEEEEe
Confidence 577899999999744 4442 2344689999987332211111 01111 1223467888866543 33321
Q ss_pred -C---------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE--eCCCcEEEEeCCCCceEEEEeecCCCCe
Q 022184 133 -D---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWTFLTRNSDEKI 200 (301)
Q Consensus 133 -d---------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~v 200 (301)
| .+++++++........+ ...++|.++.|+|+++.++++ -.-..+.|||++ +.++..+. .++-
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpR 314 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPR 314 (566)
T ss_pred ecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCc
Confidence 2 46888887733333333 346899999999999877664 366789999986 55555553 3356
Q ss_pred eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeC------CCcEEEEeCC
Q 022184 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK------DGDICVVDVK 274 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~i~~~~ 274 (301)
+++-|+|.|+++.+ .-.+.-.|.+-+||..+.+++..+.... -+-+.|+|||+++++++. |+.++||+..
T Consensus 315 N~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 315 NTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 78999999997432 3345567999999999988887766544 355799999999999975 6789999985
Q ss_pred Cc
Q 022184 275 KM 276 (301)
Q Consensus 275 ~~ 276 (301)
..
T Consensus 391 G~ 392 (566)
T KOG2315|consen 391 GS 392 (566)
T ss_pred Cc
Confidence 43
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=5.6e-12 Score=93.94 Aligned_cols=244 Identities=12% Similarity=0.121 Sum_probs=154.2
Q ss_pred ccEEEecCCccccC------CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC---CCC-eEEEEecCCcEE
Q 022184 19 VNLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVCSTTNGGCK 88 (301)
Q Consensus 19 ~~~~~~g~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~~~~d~~i~ 88 (301)
.+++|+|+-.-.-+ ..+.+.+|.+.... + .+... ....-+..+..+.|.. +|. .++-+..+|.|.
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~--~--~~l~~-~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~ 98 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMK--L--SPLDT-LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQ 98 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccc--c--Cccce-eeeecccccceeeeeeccCCccceeeeccccceEE
Confidence 45888877522111 23445555554322 2 12111 1122355678888864 555 556677789999
Q ss_pred EEEEcCCccccccccccCCCCCCC-CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecC-
Q 022184 89 LFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL- 164 (301)
Q Consensus 89 ~w~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~- 164 (301)
++.....+....+.. +....-. ....++.|++.+..++++..+|.+.+-+...... .+..+.|.-+++...|+.
T Consensus 99 ~~r~~~~~ss~~L~~--ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~ 176 (339)
T KOG0280|consen 99 LYRNDEDESSVHLRG--LSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK 176 (339)
T ss_pred EEeeccceeeeeecc--cchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC
Confidence 999876554322211 1111111 1356788999999999999999998665544332 346777888899899876
Q ss_pred CCcEEEEEeCCCcEEEEeCC-CCceEEE-EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-ceEeeeee
Q 022184 165 DSEFLATTSTDGSARIWKTE-DGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKR 241 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~ 241 (301)
+.+.+.+|++|+.+..||+| .++.+.. .+.|+. .|.++.-+|..... +++|+.|-.|++||.++ ++++.. .
T Consensus 177 ~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~kPl~~-~ 250 (339)
T KOG0280|consen 177 EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGKPLFK-A 250 (339)
T ss_pred CCceEEecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCCCce----EEEeccccceeeeehhcccCcccc-C
Confidence 45689999999999999999 3444433 233444 48888777764431 79999999999999995 444432 2
Q ss_pred ccCCCcEEEEEcCC--CCEEEEeeCCCcEEEEeCCCc
Q 022184 242 LLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 242 ~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~~~~~~ 276 (301)
...+.|+.+.++|. .+.|+++ .-+-.+|-+.+..
T Consensus 251 ~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 251 KVGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred ccccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 33578999999994 3344444 3344667776654
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.50 E-value=6.1e-12 Score=93.76 Aligned_cols=254 Identities=14% Similarity=0.062 Sum_probs=157.3
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..++.|.|..-+..+.+ +++ .....+.++++..+.........+.....+. .....++.|++.+..++++..+
T Consensus 70 s~~~dm~w~~~~~~g~~-~l~----~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~--~~~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDF-NLL----DAHARGQIQLYRNDEDESSVHLRGLSSKKIS--VVEALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred cccceeeeeeccCCccc-eee----eccccceEEEEeeccceeeeeecccchhhhh--heeeeEEEeeccCceEEEEcCC
Confidence 34667778766554542 111 1235677788887765544433333222221 1145688899999999999889
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCC-Ccceecc-cccCCccEEEEE
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD 161 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~-~~~~~~~-~~~~~~~i~~~~ 161 (301)
|.+.+-+........ ......|.-+.....|+. +.+++.+|++|+.+..||++ .++.+.. ...|+..|.+|.
T Consensus 143 G~~~~v~~t~~~le~-----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 143 GSISGVYETEMVLEK-----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY 217 (339)
T ss_pred CcEEEEecceeeeee-----cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence 988855543332211 012223666778888877 56789999999999999998 3333333 455777899998
Q ss_pred ecC-CCcEEEEEeCCCcEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce----
Q 022184 162 FSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---- 235 (301)
Q Consensus 162 ~~~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---- 235 (301)
-+| .+.+++||+.|..|++||.|+ ++++..-. ..+.|..+.++|.-.... ..+..-+-.++-+.....
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~l----L~~CMh~G~ki~~~~~~~~e~~ 291 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRL----LAACMHNGAKILDSSDKVLEFQ 291 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHH----HHHHHhcCceEEEecccccchh
Confidence 877 677999999999999999994 55554443 235699999999765422 222222234555544322
Q ss_pred -EeeeeeccCCCcEEEEEcCCCCEEEEee-CCCcEE-EEeCCCc
Q 022184 236 -KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDIC-VVDVKKM 276 (301)
Q Consensus 236 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~-i~~~~~~ 276 (301)
.....+.|..-...-.|......|++++ .|+.++ +|-.-++
T Consensus 292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2233445555555556644445688765 456544 6654443
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=1.7e-12 Score=98.80 Aligned_cols=219 Identities=11% Similarity=0.210 Sum_probs=144.7
Q ss_pred CCCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceee----------------eC-----------Cc
Q 022184 2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----------------TS-----------PL 54 (301)
Q Consensus 2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~-----------~~ 54 (301)
|...+|..+.|.++.+...+++. ..+.++++|.......... .. ..
T Consensus 82 eieEKinkIrw~~~~n~a~FLls-------tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~ 154 (433)
T KOG1354|consen 82 EIEEKINKIRWLDDGNLAEFLLS-------TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEAS 154 (433)
T ss_pred hhhhhhhhceecCCCCccEEEEe-------cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeee
Confidence 44567888999987654444443 3677789998765433220 00 01
Q ss_pred eeccc-cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEee-CCCEEEEee
Q 022184 55 VTYVF-DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV-DGSRFAAGG 131 (301)
Q Consensus 55 ~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~ 131 (301)
+...+ .+|+--|+++.++.|++.++++ .|=.|.+|+++-......+..-....+. -..-|++..|+| ..+.++..+
T Consensus 155 prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 155 PRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 12222 5688889999999999999987 5677999999765443322211111110 123578889999 566788888
Q ss_pred cCCeEEEEeCCCccee------cccc----------cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-CCceEEEEee
Q 022184 132 VDGHLRIMHWPSLRII------LDEP----------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTR 194 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~------~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~ 194 (301)
..|+|++-|++..... ...+ .--..|.++.|+++|+++++-+. -+|++||+. ..+++..++.
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 8999999999843221 1111 11136889999999999998643 689999994 4566666654
Q ss_pred cCC-----------C---CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 195 NSD-----------E---KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 195 ~~~-----------~---~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
|.. . .-..++|+.++.+ +.+|+....+++|+...+
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~-----v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSY-----VMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCcce-----EecccccceEEEecCCCC
Confidence 421 1 1235789998887 799999999999996543
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.9e-11 Score=100.01 Aligned_cols=176 Identities=11% Similarity=0.034 Sum_probs=114.6
Q ss_pred CeeEEEEeeCCCE-EEEeec---CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEE-eCC--CcEEEEeCCCC
Q 022184 114 PQKCLSFSVDGSR-FAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTEDG 186 (301)
Q Consensus 114 ~v~~~~~s~~~~~-l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~i~i~d~~~~ 186 (301)
......|+|||+. ++..+. +..|+++|+.+++... +....+......|+|||+.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678999999985 665443 3569999998887643 33344556678899999876644 333 46888898777
Q ss_pred ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-
Q 022184 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD- 265 (301)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 265 (301)
+. ..+..... ......|+|||+.+++ .........|.++|+.+++..+.... .. ....|||||++|+.....
T Consensus 268 ~~-~~LT~~~~-~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 268 TL-TQITNYPG-IDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRET 340 (419)
T ss_pred cE-EEcccCCC-ccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCC
Confidence 64 33433222 2345689999998432 12222334788889987765432221 11 234899999998877653
Q ss_pred --------CcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 266 --------~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
..|.+.|+.+++....... .......|+|||+
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SPDG~ 380 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSSDGG 380 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECCCCC
Confidence 3688889988876554422 2233689999996
No 261
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=1.7e-11 Score=99.63 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=116.3
Q ss_pred CEEE-EeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184 125 SRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (301)
Q Consensus 125 ~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 203 (301)
++++ +-..++.|.+.|..+.+.+.++......-..+.++|||+++++++.|+.|.++|+.+++.+.++.... ....+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceE
Confidence 3443 44568999999999998888876655444567899999999999999999999999999999987543 47899
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc-------CCCcEEEEEcCCCCEEEEeeC-CCcEEEEeCCC
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK 275 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~~i~i~~~~~ 275 (301)
++++||+++ +++...++.+.++|.++.+++..+... ...+..+..+|....+++.-. .+.|.+.|...
T Consensus 84 ~~s~DG~~~----~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 84 AVSPDGKYV----YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EE--TTTEE----EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEcCCCCEE----EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999973 345556889999999999888766543 235677888888885555544 48888889876
Q ss_pred ceeeccccccccCccEEEEEEccCCC
Q 022184 276 MEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 276 ~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.+.+....... ........|+|+||
T Consensus 160 ~~~~~~~~i~~-g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 160 PKNLKVTTIKV-GRFPHDGGFDPDGR 184 (369)
T ss_dssp SSCEEEEEEE---TTEEEEEE-TTSS
T ss_pred ccccceeeecc-cccccccccCcccc
Confidence 54332211112 45677899999986
No 262
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=7.6e-13 Score=104.89 Aligned_cols=209 Identities=14% Similarity=0.109 Sum_probs=157.6
Q ss_pred eccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecC
Q 022184 56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD 133 (301)
Q Consensus 56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d 133 (301)
...|..|.+.|..+.|+..|..|++++.|..|.+||.........+.. .|...|....|-| +.+.+++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceecccc
Confidence 456789999999999999999999999999999999988766433322 3666777777888 45679999999
Q ss_pred CeEEEEeCCC-cce--ecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEee--cCCC---CeeEEE
Q 022184 134 GHLRIMHWPS-LRI--ILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR--NSDE---KIELCR 204 (301)
Q Consensus 134 g~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~ 204 (301)
|.+++=.+.. +.. ...+..|.++|..++.-|+.. .|.+++.|+.+.-+|++.+.+...+.. .... ....++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999877643 222 344567888999999999654 699999999999999998766544432 1121 356788
Q ss_pred EccCCCcceEEEEEEeCCcceEEEEEccCceEe------eeee------ccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
..|...+. +++++.|..+++||.+.-... ..+. ...-.|++++|+.++.-|.++-.|-.|++|+
T Consensus 289 ~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~ 364 (559)
T KOG1334|consen 289 VDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN 364 (559)
T ss_pred cCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence 88887753 588999999999998753321 1111 1234699999998887777777888899996
Q ss_pred CC
Q 022184 273 VK 274 (301)
Q Consensus 273 ~~ 274 (301)
-.
T Consensus 365 ~~ 366 (559)
T KOG1334|consen 365 KS 366 (559)
T ss_pred cc
Confidence 44
No 263
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=3e-13 Score=122.04 Aligned_cols=203 Identities=16% Similarity=0.236 Sum_probs=156.3
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
..|-..|.++.=+|...+.++|+.||.+++|....++.....- ......|+.+.|+.+|+.+.++..||.+.+|
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------ccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 4445668888889999999999999999999987665422211 1234788999999999999999999999999
Q ss_pred eCCCcceecccccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE
Q 022184 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216 (301)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (301)
... .++....+.|.....++.|-. ..+++++ .++.+.+||..-......+...|.+.++++++.|....
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql----- 2350 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL----- 2350 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE-----
Confidence 976 455566667777888888874 5667654 56789999975432222222345556999999999987
Q ss_pred EEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 217 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
+++|+.+|.|++||++..+.+..++. ++ ...++++|+..|.++||++....+++.+...|
T Consensus 2351 lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 79999999999999998776655543 44 56799999999999999999887777665443
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=4.4e-12 Score=109.09 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=126.6
Q ss_pred EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec
Q 022184 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148 (301)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~ 148 (301)
+.++++.-++++|+.-+.|.+|+......+ .....|.+.|..+.|+-||+++++.++|.++++|++++.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC
Confidence 344666668999999999999999844332 2345688999999999999999999999999999999988765
Q ss_pred -ccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 149 -DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 149 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
...+|...++.++|.|+ .+++++.|-+.++|+. .++.+..+..|....+..++..++... .++++.|+.++
T Consensus 212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~-----~vT~g~Ds~lk 283 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVII-----KVTGGNDSTLK 283 (967)
T ss_pred cccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceE-----EEeeccCcchh
Confidence 56788899999999998 8999999999999976 455566777787778999999988876 79999999999
Q ss_pred EEEccC
Q 022184 228 VYDIST 233 (301)
Q Consensus 228 ~~d~~~ 233 (301)
+||+..
T Consensus 284 ~~~l~~ 289 (967)
T KOG0974|consen 284 LWDLNG 289 (967)
T ss_pred hhhhhc
Confidence 999764
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=2.9e-11 Score=92.16 Aligned_cols=200 Identities=9% Similarity=0.159 Sum_probs=129.2
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
.|++++++.++ ...+.+|-..+ .+.-+.....-.+ .........|...|..+.|+...+.+++.+.|
T Consensus 69 ~~~~~~~y~~e---~~~L~vg~~ng------tvtefs~sedfnk----m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 69 SPCSAMEYVSE---SRRLYVGQDNG------TVTEFALSEDFNK----MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred CCceEeeeecc---ceEEEEEEecc------eEEEEEhhhhhhh----cchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence 46777888765 44555554333 2223322221111 11233456799999999999999999999999
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC--CcceecccccCCccEEEEEe
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~~~~ 162 (301)
..+.---.+.+....... -.....++.+.-. +...|...|.|.+..+. .-..+..+.+|.+++.+++|
T Consensus 136 k~~~~hc~e~~~~lg~Y~--------~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYN--------FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred cceEEEeeccCCcccceE--------eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence 866544444443311110 0111122222222 45556666766665543 44566778889999999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
.|....|.++..|..+.+||+-..+-+......+...|..+...+.-+. +.+.+.||.|.+||++
T Consensus 206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMN 270 (404)
T ss_pred cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEecc
Confidence 9999999999999999999997665544333333446887777776666 7889999999999986
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=3.3e-10 Score=90.27 Aligned_cols=199 Identities=12% Similarity=-0.011 Sum_probs=131.5
Q ss_pred CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec----------CCeEEEEeCCCcceecccccCC
Q 022184 85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------DGHLRIMHWPSLRIILDEPKAH 154 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~ 154 (301)
++|.+.|.++.+....+... .....+ +|||++.|+++.. +..|.+||..+.+.+.++.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G--------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG--------FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc--------CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 78999999887753333221 122334 9999999887765 7899999999999887665322
Q ss_pred c-------cEEEEEecCCCcEEEEEe-C-CCcEEEEeCCCCceEEEEeecCCCC--------------------------
Q 022184 155 K-------SVLDMDFSLDSEFLATTS-T-DGSARIWKTEDGVAWTFLTRNSDEK-------------------------- 199 (301)
Q Consensus 155 ~-------~i~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~-------------------------- 199 (301)
+ ....++++|||++|+... . +..|.+.|+.+++.+..+..+....
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCC
Confidence 2 334789999999888766 3 6889999999887766543221100
Q ss_pred ----eeEE--------------EEcc-CCCcceEEEEEEeCCcceEEEEEccCce-----Eeeeeec-------cCCCcE
Q 022184 200 ----IELC--------------RFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN-----KIGHKRL-------LRKPAS 248 (301)
Q Consensus 200 ----v~~~--------------~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~-------~~~~v~ 248 (301)
.... .|.+ +|++ ++... .|.|.+.|+.... ....+.. ......
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-----~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-----VWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcE-----EEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 0000 1122 4544 22223 3889999854322 2222111 112344
Q ss_pred EEEEcCCCCEEEEee----------CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 249 VLSISLDGKYLAMGS----------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 249 ~~~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
-++++|+++.+++.. ..+.|.++|..+++.+..+.. ...+..++++|||+
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgk 311 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAK 311 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCC
Confidence 599999999888853 125799999999999988754 45899999999986
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.8e-10 Score=93.27 Aligned_cols=228 Identities=17% Similarity=0.186 Sum_probs=137.9
Q ss_pred CcceEEEECCCCCeEEEEec-----------CCcEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEee
Q 022184 64 GDPMTIAVNPSGDDFVCSTT-----------NGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGG 131 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~-----------d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~ 131 (301)
..|.-+.|||+.+||++=+. ...+.|||+.++.....+... ..... -.-..||.|++++|--.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~-----~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI-----KSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc-----CCCccccceEEeccCCceeEEec
Confidence 34889999999999998652 257999999999864433221 11111 23468999999998766
Q ss_pred cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC-----CcEEEEeCC----------------------
Q 022184 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTE---------------------- 184 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~---------------------- 184 (301)
. ..|.||+..+...+-...-.-..|....|+|.++.||.=... ..+.+-.+.
T Consensus 325 ~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 325 G-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred c-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc
Confidence 5 568899876644332222223467778888877777642210 011121111
Q ss_pred CCceEEEE---------------------e--------ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC-c
Q 022184 185 DGVAWTFL---------------------T--------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-W 234 (301)
Q Consensus 185 ~~~~~~~~---------------------~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~ 234 (301)
+|..+... . ..-...+...+|-|.|.... .+.......++.+|.+++ .
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~--vi~g~~~k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFA--VISGNTVKNTVSFYAVETNI 481 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEE--EEEccccccceeEEEeecCC
Confidence 11111100 0 00123466789999999722 233334456788898873 2
Q ss_pred eEeeee-eccCCCcEEEEEcCCCCEEEEee---CCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 235 NKIGHK-RLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 235 ~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~---~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
.....+ .......+.+.|+|.|++++++. ..|.+.++|+.-..........| ...+.+.|.|.||
T Consensus 482 ~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtGR 550 (698)
T KOG2314|consen 482 KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTGR 550 (698)
T ss_pred CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCCC
Confidence 221111 12235678899999999998874 56889999998544333332334 4577889999886
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=3.8e-10 Score=90.41 Aligned_cols=267 Identities=10% Similarity=0.081 Sum_probs=168.0
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
+.-|+..++|+|. +.+++.... ..|++|...... .+. .+ ....|..+.|+|.+++|.+=+
T Consensus 31 ~~~p~~~~~~SP~---G~~l~~~~~-------~~V~~~~g~~~~-~l~-------~~--~~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPL---GTYLFSEHA-------AGVECWGGPSKA-KLV-------RF--RHPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCc---chheehhhc-------cceEEccccchh-hee-------ee--ecCCceecccCcccceeeeec
Confidence 3567888889977 556665332 334666543332 221 11 145688899999999998765
Q ss_pred cCC---------------cEEEEEEcCCccccccccccC--------------------------------CCCCC----
Q 022184 83 TNG---------------GCKLFEVYGGATDINLLAKKM--------------------------------PPLQD---- 111 (301)
Q Consensus 83 ~d~---------------~i~~w~~~~~~~~~~~~~~~~--------------------------------~~~~~---- 111 (301)
..+ .+.+||+.++.....+..... ....+
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~ 170 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKN 170 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhh
Confidence 433 489999887765111100000 00000
Q ss_pred --CCCeeEEEEeeC--CCEEEE-----eecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---------
Q 022184 112 --AGPQKCLSFSVD--GSRFAA-----GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--------- 173 (301)
Q Consensus 112 --~~~v~~~~~s~~--~~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------- 173 (301)
...+....|+|. +..|+. ....+++++|.+..+..+....-..-.=..+.|++.|++|+.--
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 145677788885 334443 34578899999876655433221122234688999999766421
Q ss_pred --CCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEE
Q 022184 174 --TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251 (301)
Q Consensus 174 --~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~ 251 (301)
....+.|++++........ ...++|...+|.|.++.. .++.|-.+..+.++|++.. .. +......=..+.
T Consensus 251 yfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F---~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~ 322 (561)
T COG5354 251 YFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRF---AVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIF 322 (561)
T ss_pred eeccceEEEEeecccccceec--cccccceeeeecccCCce---eEEecccccceeecccccc-eE--EecCCccccccc
Confidence 1245788888744433332 335679999999999972 2566778899999999875 33 233344556788
Q ss_pred EcCCCCEEEEeeCC---CcEEEEeCCCceeec-cccccccCccEEEEEEccCCC
Q 022184 252 ISLDGKYLAMGSKD---GDICVVDVKKMEINH-WSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 252 ~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~ 301 (301)
|+|.+++++.++.| |.+.+||........ .+ . ....+-+.|+|||+
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~---~~n~s~~~wspd~q 372 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-N---GLNTSYCDWSPDGQ 372 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccCCceEEEEEe-e---cCCceEeeccCCce
Confidence 99999999998766 679999998776554 33 2 33456678999985
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=1.1e-09 Score=100.25 Aligned_cols=209 Identities=13% Similarity=0.050 Sum_probs=136.3
Q ss_pred CcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCC--CC--------CCCCCeeEEEEee-CCCEEEEee
Q 022184 64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP--PL--------QDAGPQKCLSFSV-DGSRFAAGG 131 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~--~~--------~~~~~v~~~~~s~-~~~~l~~~~ 131 (301)
.....++++++++.|+++.. .+.|+++|+.++.... +...... .. ..-.....++++| ++.++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 45789999998887766654 4679999986654311 1000000 00 0012346899999 565666667
Q ss_pred cCCeEEEEeCCCcceecc--------ccc------CCccEEEEEecCCCcE-EEEEeCCCcEEEEeCCCCceEEEEee--
Q 022184 132 VDGHLRIMHWPSLRIILD--------EPK------AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTR-- 194 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~~~--------~~~------~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~-- 194 (301)
.++.|++||..++..... ..+ .-.....++++|+++. +++-+.++.|++||+.++........
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 789999999876643210 000 0124567999999984 45555678999999987653211100
Q ss_pred ----------cC--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-------------c
Q 022184 195 ----------NS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L 243 (301)
Q Consensus 195 ----------~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------------~ 243 (301)
.. -.....++++++|.. .++...++.|++||..++........ .
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 00 012468899999974 46677889999999987765422110 1
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 278 (301)
-.....++++++|+++++-+.++.|++||+.+++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12567899999999888888899999999988764
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=3.3e-10 Score=91.75 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=142.2
Q ss_pred eEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEE-----eecCCeEEEE
Q 022184 67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA-----GGVDGHLRIM 139 (301)
Q Consensus 67 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~-----~~~dg~i~v~ 139 (301)
.+..|++|..+.+- -..+.+++|+..+..... ..-|...+..+.+||.+ ..+|+ .+.-..++||
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~--------~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~ 199 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ--------HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY 199 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCcccee--------eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence 47778877654432 234569999998744311 11145778899999863 33443 3456789999
Q ss_pred eCCCccee-----cccccCCccEEEEEecCCCcE-E--EEEeCCC---------cEEEEeCCCCceEEEEeecCCCCeeE
Q 022184 140 HWPSLRII-----LDEPKAHKSVLDMDFSLDSEF-L--ATTSTDG---------SARIWKTEDGVAWTFLTRNSDEKIEL 202 (301)
Q Consensus 140 d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-l--~~~~~d~---------~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (301)
........ +.+. ..+. ..+.|++-|+- | ++...|. ++++.++....+...+ ...++|.+
T Consensus 200 ~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhd 275 (566)
T KOG2315|consen 200 KYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHD 275 (566)
T ss_pred ccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceE
Confidence 87632211 1111 1123 35789987773 2 2232333 5888888744443333 34678999
Q ss_pred EEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceee
Q 022184 203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEIN 279 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~ 279 (301)
+.|+|+++. ++++.|-.-..+.+||++. .++ +....++-+++-|+|.|++|+.++.+ |.|.|||+.+.+++
T Consensus 276 v~W~~s~~E---F~VvyGfMPAkvtifnlr~-~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 276 VTWSPSGRE---FAVVYGFMPAKVTIFNLRG-KPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred EEECCCCCE---EEEEEecccceEEEEcCCC-CEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 999999987 3357777888999999974 444 33446677889999999999998765 78999999998888
Q ss_pred ccccccccCccEEEEEEccCCC
Q 022184 280 HWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 280 ~~~~~~~~~~~v~~~~~spdg~ 301 (301)
..+. ...-+-++|+|||+
T Consensus 350 ~~~~----a~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 350 AKFK----AANTTVFEWSPDGE 367 (566)
T ss_pred cccc----cCCceEEEEcCCCc
Confidence 7764 34466789999995
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.38 E-value=1.1e-11 Score=96.08 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=120.6
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee---cCCeEEEEeC
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHW 141 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~v~d~ 141 (301)
.+..+..++.+++||++..+....++++.......++.. ........+.+.|..+......+. +...+.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~----~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD----VSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee----EeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 355566788999999998888888888876543122111 111223345556655555554443 4455566665
Q ss_pred CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeC
Q 022184 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
..+.. ..+.+|-+.+++++|+||+++|+++.+|..|++-....-..+..+..+|...|..++.-++.. +++++
T Consensus 140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s 212 (390)
T KOG3914|consen 140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS 212 (390)
T ss_pred cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence 55444 345578889999999999999999999999999998888888888776777899999988766 68999
Q ss_pred CcceEEEEEccCceEeeee
Q 022184 222 DKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~~~~~ 240 (301)
.|++|++||+++++.+..+
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999999876444
No 272
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.38 E-value=1.8e-09 Score=80.81 Aligned_cols=211 Identities=13% Similarity=0.058 Sum_probs=118.2
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC------CCEEEEeecCCe
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD------GSRFAAGGVDGH 135 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~dg~ 135 (301)
....=..++||||+..||.+...|+|++||+.+.+........ .....-...|..+.|-+. ...|++-..+|.
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~-~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAM-SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccc-ccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 3445678999999999999999999999999875542211111 111122356777777552 224666677888
Q ss_pred EEEEeCCCcc-----eecc--ccc-CCccEEEEEecCCCcEEEEEeCCCc-EEEEeCCCCceEEEEeecCCCCeeEEEEc
Q 022184 136 LRIMHWPSLR-----IILD--EPK-AHKSVLDMDFSLDSEFLATTSTDGS-ARIWKTEDGVAWTFLTRNSDEKIELCRFS 206 (301)
Q Consensus 136 i~v~d~~~~~-----~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 206 (301)
++-|-+..+. .... +.. ....|.++.++|..++|+.|+.... -.... ....-+..+..-.+.+-.....+
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-ASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-ccccCceEEEEcCCCCcEEEccc
Confidence 8777653221 1111 212 2358999999999888877764322 00000 00000111111111111111111
Q ss_pred cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
.+... .... .+..+|.+-+.+...........|..+..||||+.||+...+|.|.+|++.+..+....
T Consensus 200 ~~~~~-----~~~~---~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 200 SEDDI-----TASS---KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cCccc-----cccc---cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 11110 0010 11233433332222222334567999999999999999999999999999987766544
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=6.8e-10 Score=82.11 Aligned_cols=186 Identities=13% Similarity=0.080 Sum_probs=128.8
Q ss_pred eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCC--CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecc--cc
Q 022184 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG--PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILD--EP 151 (301)
Q Consensus 77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~--~~ 151 (301)
.+..++.|.++++++++.+...... |.. .+.++.+++|++++++.+....|..|.++... .+.. ..
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 4566778999999999876542111 222 37889999999999999999999999886532 2222 11
Q ss_pred cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE----EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
...+.-.+..|+.....+|++..||++.|||+|...... ....++.+.++.+.|++-|..-+ ++....-+.+.
T Consensus 201 ~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~h 277 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVH 277 (344)
T ss_pred ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEE
Confidence 222455678899999999999999999999998754332 22345677899999999776533 34556678899
Q ss_pred EEEccCceEeeeeeccC--------CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 228 VYDISTWNKIGHKRLLR--------KPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 228 ~~d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+.|++++...+.+.... ..+..-.|+.++..+.+.+++ .+.=|++.+
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 99999886544333222 336677777777666666554 344555544
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.33 E-value=5.8e-10 Score=82.47 Aligned_cols=222 Identities=11% Similarity=0.044 Sum_probs=142.4
Q ss_pred EEEECC-----CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeC
Q 022184 68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 68 ~~~~~~-----~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~ 141 (301)
.+.|.| ...+||.++..|...+|...+.+....+... +...|.-+.=.. ...-+..++.|.++++.++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence 355555 3348889999999999999877653332221 111111111001 1224667788888888887
Q ss_pred CCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-eEEE-EeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184 142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (301)
.-+..........-.+.++++++|++++++.++...|-.|.+.... .+.. ........-.+..|+..... .++
T Consensus 146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv 220 (344)
T KOG4532|consen 146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV 220 (344)
T ss_pred ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence 6443322221111237899999999999999999999999987533 2222 22233333567888888776 688
Q ss_pred eCCcceEEEEEccCceEe-----eeeeccCCCcEEEEEcCCC--CEEEEeeCCCcEEEEeCCCceeeccccc------cc
Q 022184 220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSKR------LH 286 (301)
Q Consensus 220 ~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~~~~~~~~~~~~~~------~~ 286 (301)
+..||++.|||++..... .....|++.++.+.|++.| .+|+..-.-+.+.+.|++++...+.+.. .|
T Consensus 221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 999999999999875432 2334577899999999866 3566665668899999998865444321 12
Q ss_pred cCccEEEEEEccCC
Q 022184 287 LGTSIALVEFCPTQ 300 (301)
Q Consensus 287 ~~~~v~~~~~spdg 300 (301)
....|....|+.++
T Consensus 301 ~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 301 NTQHIFGTNFNNEN 314 (344)
T ss_pred cccccccccccCCC
Confidence 12346666666554
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.33 E-value=1.4e-10 Score=87.47 Aligned_cols=253 Identities=15% Similarity=0.172 Sum_probs=154.4
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccC------------CcceEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIA 70 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~ 70 (301)
....|+++.|-.. +.++++|..++.+ .++.-.... .. .......+++|. ..|..+.
T Consensus 25 ead~ItaVefd~t---g~YlatGDkgGRV------vlfer~~s~-~c--eykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 25 EADKITAVEFDET---GLYLATGDKGGRV------VLFEREKSY-GC--EYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ccceeeEEEeccc---cceEeecCCCceE------EEeeccccc-cc--chhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 3456888888766 7899998854432 344322211 11 111122344443 3488899
Q ss_pred ECCCCC--eEEEEecCCcEEEEEEcCCcccc----------------------ccc--------------cccCCCCCCC
Q 022184 71 VNPSGD--DFVCSTTNGGCKLFEVYGGATDI----------------------NLL--------------AKKMPPLQDA 112 (301)
Q Consensus 71 ~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~----------------------~~~--------------~~~~~~~~~~ 112 (301)
|..++. .++..+.|.+|++|.+....... .+. ......-.|.
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 876543 56666799999999987552200 000 0001112344
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce---ecccccCC-----ccEEEEEecCC-CcEEEEEeCCCcEEEEeC
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSLD-SEFLATTSTDGSARIWKT 183 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~ 183 (301)
..+.++.|+.|...++++. |=.|.+|++.-... +..+..|. .-|++..|+|. ...+.-.+..|.|++-|+
T Consensus 173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred eEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence 5678889998888887765 77899998853221 22233333 24788899994 446677778899999999
Q ss_pred CCCceEE------EEee---------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccC---
Q 022184 184 EDGVAWT------FLTR---------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR--- 244 (301)
Q Consensus 184 ~~~~~~~------~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~--- 244 (301)
|+..... .... .--..|..+.|+++|++ +++ ..--+|++||.+..+ ++.++..|.
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry-----Ils-RdyltvkiwDvnm~k~pikTi~~h~~l~ 325 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY-----ILS-RDYLTVKIWDVNMAKNPIKTIPMHCDLM 325 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE-----EEE-eccceEEEEecccccCCceeechHHHHH
Confidence 8543211 1110 01124788999999997 343 445689999987643 344443331
Q ss_pred ---------CCc---EEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 245 ---------KPA---SVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 245 ---------~~v---~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
..| ..+.||.|.+.+.+|+..+..-+|-..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 122 357889999999999988887777643
No 276
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.33 E-value=7.7e-09 Score=80.20 Aligned_cols=211 Identities=15% Similarity=0.105 Sum_probs=136.4
Q ss_pred EEEECC-CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEe-eCCCEEEEeecCCeEEEEeCCCcc
Q 022184 68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLR 145 (301)
Q Consensus 68 ~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~v~d~~~~~ 145 (301)
++.|.+ ++.++++--..+.|..|+..++..... .. .....+++. +++ .|+.+...+ +.++|+.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~---------~~-~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI---------DL-PGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---------ES-SSEEEEEEECTTS-EEEEEETTC-EEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE---------ec-CCCceEEEEccCC-EEEEEEcCc-eEEEecCCCc
Confidence 678888 565556655678899999877654211 01 126778888 564 555555444 5666988875
Q ss_pred eeccccc-----CCccEEEEEecCCCcEEEEEeCC--------CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184 146 IILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (301)
Q Consensus 146 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (301)
....... .....+.+++.|+|++.++.... |.+..++.. ++....... -...+.++|+|+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchhe
Confidence 4322221 23478899999999977776543 456667766 444333332 2347899999999973
Q ss_pred eEEEEEEeCCcceEEEEEccCceE----eeee-eccC--CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc
Q 022184 213 FLFCTVQRGDKALLAVYDISTWNK----IGHK-RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285 (301)
Q Consensus 213 ~~~~~~~~~~~~~i~~~d~~~~~~----~~~~-~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~ 285 (301)
.++.+..+.|..|++..... ...+ .... .....++++.+|++.++....+.|.+++.+ ++.+..+...
T Consensus 149 ----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 149 ----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp ----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred ----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 35667788899999863221 1112 1122 237789999999988887788999999988 8777766433
Q ss_pred ccCccEEEEEEc-cCC
Q 022184 286 HLGTSIALVEFC-PTQ 300 (301)
Q Consensus 286 ~~~~~v~~~~~s-pdg 300 (301)
...+++++|. ||.
T Consensus 224 --~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 224 --VPRPTNCAFGGPDG 237 (246)
T ss_dssp --SSSEEEEEEESTTS
T ss_pred --CCCEEEEEEECCCC
Confidence 3589999994 543
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=4.1e-10 Score=86.00 Aligned_cols=219 Identities=13% Similarity=0.157 Sum_probs=157.4
Q ss_pred CCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC--CCCCeeEEEEeeCCCEEEE
Q 022184 52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAA 129 (301)
Q Consensus 52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~ 129 (301)
.|.....++||.+.|++...-|..+-+++.+.|.++++|--.+...- -+.+. -..+++++.+.++...|+.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-------wpsI~~~mP~~~~~~~y~~e~~~L~v 85 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-------WPSIYHYMPSPCSAMEYVSESRRLYV 85 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-------CchhhhhCCCCceEeeeeccceEEEE
Confidence 45556678999999999999998889999999999999976544331 11222 2467899999999999999
Q ss_pred eecCCeEEEEeCC----CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184 130 GGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (301)
Q Consensus 130 ~~~dg~i~v~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 205 (301)
|-..|++.-+.+. .....+....|...+..+-|+-..+++++.+.|..+.---.+.+..+..+..... ..++.+
T Consensus 86 g~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~ 163 (404)
T KOG1409|consen 86 GQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--ASALQF 163 (404)
T ss_pred EEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--CCCCce
Confidence 9999999988653 3444556677888999999999899999999998876655555554433321111 111111
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEc--cCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 283 (301)
.-. +...+...+.|.+-.+ ..-.++..+.+|...+++++|.|..+.|.+|..|..+.+||+...+-.....
T Consensus 164 d~~-------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 164 DAL-------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred eeE-------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 111 1455555666665544 3345677889999999999999999999999999999999997654443333
Q ss_pred ccc
Q 022184 284 RLH 286 (301)
Q Consensus 284 ~~~ 286 (301)
.+|
T Consensus 237 ~gh 239 (404)
T KOG1409|consen 237 QGH 239 (404)
T ss_pred ccc
Confidence 444
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.8e-11 Score=99.24 Aligned_cols=215 Identities=14% Similarity=0.117 Sum_probs=150.4
Q ss_pred eeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
....+.||+..|..++--.+.+.+++++.|++|++|.++..........-......|..+|..+.|-.+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3456789999999998877888899999999999999975433222211123344588899999999888777765 78
Q ss_pred eEEEEeCCCcceeccccc--CCccEEEEEecC--CCcEE-EEEeCCCcEEEEeCCCCceEEEEeec----CCCCeeEEEE
Q 022184 135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN----SDEKIELCRF 205 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~ 205 (301)
-|.+||.--+..+.++.. .++.+..+.--| +...+ +-++...+|+++|.+.++....++.. ....+++++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 899999866666543332 122333333333 33333 44478899999999998877776532 2245889999
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE-EeCCCce
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKME 277 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i-~~~~~~~ 277 (301)
.+.|++ ++.+-.+|.|.+.|.++++.+......+.....++ .|..+.|+....|..+.+ |...++.
T Consensus 885 a~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 885 ADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred ccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 999998 67788899999999999998766655554444433 345566666667777777 7655543
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=3.3e-11 Score=100.58 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=165.1
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCC-eEEEEecCC
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNG 85 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~ 85 (301)
|-..+|++.+.... -++.... ....+|.+..... ...+..+.+|...|+.+.|+|... .+++++.|-
T Consensus 70 vad~qws~h~a~~~-wiVsts~------qkaiiwnlA~ss~-----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt 137 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPY-WIVSTSN------QKAIIWNLAKSSS-----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT 137 (1081)
T ss_pred hcceecccCCCCce-eEEecCc------chhhhhhhhcCCc-----cceEEEEecCccceeccccCCCCCcceeeccccc
Confidence 34567887765333 3333322 2225777754432 223567899999999999999665 778999999
Q ss_pred cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc-eecccccCCccEEEEEecC
Q 022184 86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSL 164 (301)
Q Consensus 86 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~ 164 (301)
.+..||+.+......... .-......++|+-....+++.+....|++||++.+. ++..+.+|...|..++|+.
T Consensus 138 ~vh~wd~rSp~~p~ys~~------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr 211 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTS------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNR 211 (1081)
T ss_pred cceeeeccCCCcceeeee------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhh
Confidence 999999988765332221 123455778998744445555667889999998654 4556667777888888876
Q ss_pred -CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC----------
Q 022184 165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------- 233 (301)
Q Consensus 165 -~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------- 233 (301)
-...+.+++.|++|+.||................++..-.+-|-|....+ ....+ +..+.+++.++
T Consensus 212 ~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~--mp~~G-~n~v~~~~c~n~d~e~n~~~~ 288 (1081)
T KOG0309|consen 212 FKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI--MPMVG-GNMVPQLRCENSDLEWNVFDL 288 (1081)
T ss_pred hhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe--ccccC-CeeeeeccccchhhhhccccC
Confidence 33468899999999999987654333333334567888888887775322 12222 22555554332
Q ss_pred ceEeeeeeccCCCcEEEEEcCCC----------CEEEEeeCCCcEEEEeCCC
Q 022184 234 WNKIGHKRLLRKPASVLSISLDG----------KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~i~~~~~ 275 (301)
.+++..+.+|...|-...|-..+ -.|++-+.|..+++|-+.+
T Consensus 289 ~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 289 NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 34577888888877666664322 2689999999999999864
No 280
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.29 E-value=5.2e-10 Score=89.65 Aligned_cols=227 Identities=14% Similarity=0.123 Sum_probs=157.2
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 133 (301)
....-++..++|||.|.+|++....+ |.+|.-....... .+ ....|..+.|||++++|.+=+..
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~--------~~-~~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV--------RF-RHPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cccCcchhheeecCcchheehhhccc-eEEccccchhhee--------ee-ecCCceecccCcccceeeeeccCCccChh
Confidence 33567899999999999999987777 9999877665321 12 23568899999999999986533
Q ss_pred ---------CeEEEEeCCCcceecccccCCcc--EE-EEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCe
Q 022184 134 ---------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKI 200 (301)
Q Consensus 134 ---------g~i~v~d~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v 200 (301)
..+.+||..++..+..+.....+ .+ -+.|+.+.++.|-. ....++++++ ++.. ...+..-....+
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI 176 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence 35999999999988777655544 44 67888888876655 3467999997 3221 111111122348
Q ss_pred eEEEEccCCCcceEEEEE--EeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee-----------CCCc
Q 022184 201 ELCRFSKDGTKPFLFCTV--QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGD 267 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~d~~ 267 (301)
....|+|.+++.-++... ..+..+++++|.+.....+......+..-..+.|.+.|++|++-- ....
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 889999987664422211 346788999999987777655554454556789999999877532 1246
Q ss_pred EEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 268 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
++|+++......... .- .++|..++|.|+++
T Consensus 257 Lyl~~~~e~~i~V~~--~~-~~pVhdf~W~p~S~ 287 (561)
T COG5354 257 LYLLRITERSIPVEK--DL-KDPVHDFTWEPLSS 287 (561)
T ss_pred EEEEeecccccceec--cc-cccceeeeecccCC
Confidence 888888744433321 22 68999999999874
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.4e-10 Score=95.45 Aligned_cols=228 Identities=12% Similarity=0.130 Sum_probs=160.9
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccc--------ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL--------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
.....+++|+....++++|+.||.+++..+.+.....+. .........|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345789999999999999999999999998765432221 111223345788999999999999999999999
Q ss_pred eEEEEeCCCcceeccccc--CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE-EEeecCCCCeeEEEEccCCCc
Q 022184 135 HLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 211 (301)
.|.+|-+-.+.....+.. ..+-|.+++|+.||..+...-.||.|.+=.+....... .+++ .....+.|++|.+.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH
Confidence 999999877765443332 33568999999999999999999999887775443221 1222 12457889999987
Q ss_pred ceEEEEEEeCCcceEEEEEccCce-------E-e---eeeeccCCCcEEEEE--------cCCCCEEEEeeCCCcEEEEe
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWN-------K-I---GHKRLLRKPASVLSI--------SLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~-------~-~---~~~~~~~~~v~~~~~--------s~~~~~l~~~~~d~~i~i~~ 272 (301)
+..+-..|.+++||....- + + ..+......+..+.| -||...|+++-.+|.+.|..
T Consensus 171 -----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 171 -----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred -----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 4555667899999975321 1 1 011111223555555 35778999999999999887
Q ss_pred CCCceeeccccccccCccEEEEEEccCCC
Q 022184 273 VKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
-.+......+.. ...+....|+|+|.
T Consensus 246 ~eND~~Pvv~dt---gm~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 246 SENDPEPVVVDT---GMKIVGAKWNHNGA 271 (1189)
T ss_pred hcCCCCCeEEec---ccEeecceecCCCc
Confidence 766554444432 35788889998873
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=9.3e-09 Score=94.41 Aligned_cols=228 Identities=11% Similarity=0.080 Sum_probs=144.4
Q ss_pred ceEEEECCC-CCeEEEEecCCcEEEEEEcCCcccccccc-ccCCC------CCCCCCeeEEEEeeCCCEEEEee-cCCeE
Q 022184 66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLA-KKMPP------LQDAGPQKCLSFSVDGSRFAAGG-VDGHL 136 (301)
Q Consensus 66 v~~~~~~~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~-~~~~~------~~~~~~v~~~~~s~~~~~l~~~~-~dg~i 136 (301)
...+++++. ++.+++-...+.|+++|..+... ..... ..... ...-.....++++++++.|+++. .++.|
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 356888875 55556666678899999765422 11111 00000 00113468899999888766655 45789
Q ss_pred EEEeCCCcceeccccc----------C-------CccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCceEEEEeec---
Q 022184 137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN--- 195 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~----------~-------~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--- 195 (301)
+++|+.++... .+.+ . -.....++++| ++..+++.+.++.|++||..++.... +...
T Consensus 649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 99998765432 1110 0 11346899999 56667777788999999998765432 2110
Q ss_pred -----------CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-------------c--------c
Q 022184 196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------L--------L 243 (301)
Q Consensus 196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------------~--------~ 243 (301)
.-.....++++|++..+ .++...++.|++||+.++....... . .
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01235679999999863 3566778899999998754321000 0 0
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccccc------------ccCccEEEEEEccCCC
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL------------HLGTSIALVEFCPTQR 301 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~------------~~~~~v~~~~~spdg~ 301 (301)
-.....++++++|+++++-..+++|++||..++........+ . -.....+++++||+
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~-l~~P~GIavd~dG~ 871 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ-LSEPAGLALGENGR 871 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc-cCCceEEEEeCCCC
Confidence 113468899999998888888999999999887765432111 1 12567899999885
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=5.9e-10 Score=90.32 Aligned_cols=223 Identities=13% Similarity=0.112 Sum_probs=150.9
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------C
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------D 133 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d 133 (301)
.=+-+.|||-|.||++--..| |.+|-=++-.. ...+.| ..|.-+.|||+.++|++-+. .
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r--------~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDR--------IQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHH--------HHhccC-CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 356789999999999998888 99997655443 233333 46888999999999998542 2
Q ss_pred CeEEEEeCCCcceecccccCC--ccE-EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184 134 GHLRIMHWPSLRIILDEPKAH--KSV-LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 134 g~i~v~d~~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
..++|||+.+|...+.+.... ..+ .-+.|+.|++++|-... ..|.||+..+...+..-.... ..|....|+|.+.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki-~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI-SGIRDFSWSPTSN 359 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC-ccccCcccCCCcc
Confidence 579999999998877665422 222 23679999999987765 679999987644433222222 2488999999988
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee----------CCCcEEEEeCCCceeec
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEINH 280 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~~~~~~~~~~ 280 (301)
.+.+..--+...-..+.+..+.+++.++....++-.-..+-|-.+|.+|+.-- .-..+.|+.++......
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 53221111222335677788877777766655554445677888899888642 12246677777665443
Q ss_pred cccccccCccEEEEEEccCCC
Q 022184 281 WSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 281 ~~~~~~~~~~v~~~~~spdg~ 301 (301)
.... - ...|-.++|-|.|.
T Consensus 440 e~ve-l-ke~vi~FaWEP~gd 458 (698)
T KOG2314|consen 440 EVVE-L-KESVIAFAWEPHGD 458 (698)
T ss_pred eeee-c-chheeeeeeccCCC
Confidence 3212 2 67899999999873
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=9.9e-09 Score=92.63 Aligned_cols=246 Identities=11% Similarity=0.131 Sum_probs=145.1
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCC--CcceeeeCCceeccccccCCcceEEEECCCCCeEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC 80 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 80 (301)
....|.++.+.++.+ ...+++. .|.|-+..+++ ...... ....-...|.+++||||++.|+.
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~--------~Gdi~~~~~~~~~~~~~~E-------~VG~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALA--------SGDIILVREDPDPDEDEIE-------IVGSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEEC--------CceEEEEEccCCCCCceeE-------EEEEEcCcEEEEEECCCcCEEEE
Confidence 346788888887732 2333442 23334444433 222211 11223678999999999999999
Q ss_pred EecCCcEEEEEEcCCcc-----------------------cccccccc---------C--------CCCCCCCCeeEEEE
Q 022184 81 STTNGGCKLFEVYGGAT-----------------------DINLLAKK---------M--------PPLQDAGPQKCLSF 120 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~-----------------------~~~~~~~~---------~--------~~~~~~~~v~~~~~ 120 (301)
++.++++.+...+-.-. ...+.... . ..+.....-..++|
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW 217 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW 217 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE
Confidence 99898888765320000 00100000 0 00112234567889
Q ss_pred eeCCCEEEEeec---C---CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEEE
Q 022184 121 SVDGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTF 191 (301)
Q Consensus 121 s~~~~~l~~~~~---d---g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~ 191 (301)
-.||.++|+.+- . ..++||+-+ |......+.-.+--.+++|.|.|++||+.-. ...|.+|. ++|-.-..
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhge 295 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGE 295 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeee
Confidence 999999998764 2 579999954 6554443333333457899999999998764 23466666 44544444
Q ss_pred Eee---cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe--eeeecc-CCCcEEEEEcCCC-CEEEEeeC
Q 022184 192 LTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLL-RKPASVLSISLDG-KYLAMGSK 264 (301)
Q Consensus 192 ~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~-~~~v~~~~~s~~~-~~l~~~~~ 264 (301)
+.. +....+..+.|++|+..+ +..-.| .|.+|-..+..-. +.+... ...+..+.|+|.. ..|...+.
T Consensus 296 F~l~~~~~~~~v~~l~Wn~ds~iL-----Av~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNSDSEIL-----AVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTS 369 (928)
T ss_pred EecCCCCCCceeeEEEECCCCCEE-----EEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEec
Confidence 433 234579999999999962 332233 4999998876522 222221 2344559999953 45666666
Q ss_pred CCcEEEEe
Q 022184 265 DGDICVVD 272 (301)
Q Consensus 265 d~~i~i~~ 272 (301)
+|.+..++
T Consensus 370 ~g~~~~~~ 377 (928)
T PF04762_consen 370 NGQYEIYD 377 (928)
T ss_pred CCcEEEEE
Confidence 56665544
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=7.7e-09 Score=93.32 Aligned_cols=273 Identities=13% Similarity=0.112 Sum_probs=163.4
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcc--eeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT--SVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
.++...+|.+..+ ..+++++... .+..+++..+..... .+..-+.. ......+.|.++.+-++...++.+.
T Consensus 22 ~~~~~~~~d~~sd-~i~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~~--~~~~~~~~ivs~~yl~d~~~l~~~~ 94 (928)
T PF04762_consen 22 LPITATAFDSDSD-SIYFVLGPNE----IDYVIELDRFSQDGSVEVLASWDAP--LPDDPNDKIVSFQYLADSESLCIAL 94 (928)
T ss_pred cccceEEEecCCC-eEEEEECCCC----cceEEEEEeeccCCceeEEEecccc--CCcCCCCcEEEEEeccCCCcEEEEE
Confidence 3566777765421 3445554321 223455555554431 11110000 0023467899999999999999999
Q ss_pred cCCcEEEE----EEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC---------------C
Q 022184 83 TNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---------------S 143 (301)
Q Consensus 83 ~d~~i~~w----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~---------------~ 143 (301)
.+|.|.+. +...... ... . .-...|.+++||||+..|+..+.++++.+..-. .
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~--E~V----G--~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~ 166 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEI--EIV----G--SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE 166 (928)
T ss_pred CCceEEEEEccCCCCCcee--EEE----E--EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence 99999999 3333222 110 0 134689999999999999999989988776420 0
Q ss_pred --------cceeccccc------------------------CCccEEEEEecCCCcEEEEEeC---C---CcEEEEeCCC
Q 022184 144 --------LRIILDEPK------------------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWKTED 185 (301)
Q Consensus 144 --------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~---d---~~i~i~d~~~ 185 (301)
|+...++.+ ..+.-..++|-.||+++|+.+. . ..++||+-+
T Consensus 167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 000011100 1123457889999999998774 2 469999954
Q ss_pred CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee----ccCCCcEEEEEcCCCCEEEE
Q 022184 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAM 261 (301)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~ 261 (301)
|.....-. ...+--..++|.|.|+.+ +..-.-.....|.+|..+. -.-..+. .....+..+.|++|+..||.
T Consensus 246 G~L~stSE-~v~gLe~~l~WrPsG~lI--A~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 246 GELQSTSE-PVDGLEGALSWRPSGNLI--ASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEILAV 321 (928)
T ss_pred ceEEeccc-cCCCccCCccCCCCCCEE--EEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCEEEE
Confidence 55433333 333345688999999962 1111222345677777543 2222222 23467899999999999999
Q ss_pred eeCCCcEEEEeCCCceee--ccccccccCccEEEEEEccC
Q 022184 262 GSKDGDICVVDVKKMEIN--HWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 262 ~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~v~~~~~spd 299 (301)
.-.|. |.+|-..+.... +.+.-.. ...+..+.|+|.
T Consensus 322 ~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe 359 (928)
T PF04762_consen 322 WLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPE 359 (928)
T ss_pred EecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCC
Confidence 87665 999999876422 1111111 334555888874
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=6.8e-11 Score=107.44 Aligned_cols=175 Identities=9% Similarity=0.091 Sum_probs=127.7
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
.|+.+++|.|....... .....+. ..|+.+.|+.+|+.+..+..||.+.+|.....-. .....|.
T Consensus 2228 ~dgsv~~~~w~~~~~v~------~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~--------~s~qchn 2292 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVV------CFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY--------TSWQCHN 2292 (2439)
T ss_pred CCceEEEEeccCCCeEE------EeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcce--------eccccCC
Confidence 67778999997655332 1222333 8899999999999999999999999999872211 2222366
Q ss_pred CCeeEEEEeeCCCEEEEee---cCCeEEEEeCCCc-ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184 113 GPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 188 (301)
.....+.|-. ..+++++ .++.+.+||..-. ..-.....|.+.++++++-|..+.|++|+++|.|++||++..+.
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 6667777754 5666654 4689999996321 11122267888999999999999999999999999999998887
Q ss_pred EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
++.++. +. ...+ +++++..|.++||++.....+..+
T Consensus 2371 ~h~~~~----------~~-~~~~-----f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQA----------LD-TREY-----FVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred HHHhhh----------hh-hhhe-----eeccCcccceEEEEccccchhhcC
Confidence 766653 22 2222 588899999999999877665444
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.21 E-value=2.8e-10 Score=88.52 Aligned_cols=155 Identities=16% Similarity=0.220 Sum_probs=103.5
Q ss_pred ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC---cEEEEEEcCC
Q 022184 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGG 95 (301)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~~w~~~~~ 95 (301)
+.++|++.+. ....++.+..+.... .......+ ....+++.|..+......+..-| .+.+|....+
T Consensus 74 ~~llAv~~~~------K~~~~f~~~~~~~~~--kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 74 GRLVAVATSS------KQRAVFDYRENPKGA--KLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ceEEEEEeCC------CceEEEEEecCCCcc--eeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 6788886632 222466665544311 11111122 23345555555555555544444 4444444433
Q ss_pred ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-cCCccEEEEEecCCCcEEEEEeC
Q 022184 96 ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTST 174 (301)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 174 (301)
.. ...+.|...+..++|+||+++|+++..|..|++-....--.+..+. +|..-|..++.-++ ..|++++.
T Consensus 143 ~~--------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG 213 (390)
T KOG3914|consen 143 RC--------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG 213 (390)
T ss_pred Cc--------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC
Confidence 32 4566788999999999999999999999999998887655555544 57778999998864 45999999
Q ss_pred CCcEEEEeCCCCceEEEEe
Q 022184 175 DGSARIWKTEDGVAWTFLT 193 (301)
Q Consensus 175 d~~i~i~d~~~~~~~~~~~ 193 (301)
|+++++||+++++.+..+.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999886654
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.3e-10 Score=97.10 Aligned_cols=225 Identities=13% Similarity=0.125 Sum_probs=152.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC--CEEEEeecCCeEEEEe
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH 140 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~v~d 140 (301)
.+.+.++..+|.|+-++.+++-| +.+.|+...-.+.+..... ..-.+-...|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 56788899999999999999888 8888887665433322211 11345677888843 3344444455566888
Q ss_pred CCCc---ceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEccCCCcceEE
Q 022184 141 WPSL---RIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLF 215 (301)
Q Consensus 141 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (301)
+... .....+-+|...|+.+.|+|+.. .+++++.|..+..||+++.... ..+..- ......++|+-....
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~---- 172 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPN---- 172 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcc----
Confidence 7432 22233456777999999999654 8999999999999999986543 333322 234678899876665
Q ss_pred EEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEE
Q 022184 216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL 293 (301)
Q Consensus 216 ~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~ 293 (301)
+.+.+....|.+||++.+. ++..++.|-..+..+.|.. ....+.+.+.|++|++||.............- ..+|+.
T Consensus 173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~ 250 (1081)
T KOG0309|consen 173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWR 250 (1081)
T ss_pred -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCccee
Confidence 5666777889999998764 5566777777888888865 34568888999999999987543221111112 456666
Q ss_pred EEEccCC
Q 022184 294 VEFCPTQ 300 (301)
Q Consensus 294 ~~~spdg 300 (301)
-.+.|=|
T Consensus 251 ~r~~Pfg 257 (1081)
T KOG0309|consen 251 GRYLPFG 257 (1081)
T ss_pred ccccccC
Confidence 6665543
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=2e-08 Score=84.95 Aligned_cols=237 Identities=13% Similarity=0.090 Sum_probs=161.0
Q ss_pred EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC------------
Q 022184 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------ 75 (301)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 75 (301)
.++.|+|. .++|.|.+.- +..+|....+. ...+..|...|+.+.|.|..
T Consensus 19 ~A~Dw~~~----GLiAygshsl---------V~VVDs~s~q~------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 19 NAADWSPS----GLIAYGSHSL---------VSVVDSRSLQL------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred cccccCcc----ceEEEecCce---------EEEEehhhhhh------hhccccCccceeEEEeccCCCchhccCccccc
Confidence 45678765 3788866422 33444443322 45577889999999997621
Q ss_pred CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee---CC-CEEEEeecCCeEEEEeCCCcceecccc
Q 022184 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEP 151 (301)
Q Consensus 76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~ 151 (301)
-.||++...|.|.+||....... ....++..++..++|-+ +. ..|++-.....+.+|+..+|+...+..
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~-------~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ 152 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVI-------NWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD 152 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhh-------hhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence 15667777899999999876542 22223567888888877 34 456666778899999999999988877
Q ss_pred cCCccEEEEEecC-CCcEEEEEeCCCcEEEEeCCC-------CceEEEEeecCC----------------CC--------
Q 022184 152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSD----------------EK-------- 199 (301)
Q Consensus 152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~----------------~~-------- 199 (301)
..+....|+.+.| |.+.+...+..|.+.+-+.-. ++..+....+.+ .+
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 7777888899999 667777767677776665421 122221111110 00
Q ss_pred eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCC--CEEEEeeCCCcEEEEeCCC
Q 022184 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~~~~~ 275 (301)
...++|+|.-+.+.+ ......+.++|++-..++.......+.+--+.+-|++ ..|++.-.||.+.+|-.+.
T Consensus 233 ~a~faf~p~~rn~lf-----i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPHWRNILF-----ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChhhhceEE-----EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 123567888776332 2235569999999888887777777777778887765 5799999999999997664
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.17 E-value=7.2e-08 Score=74.51 Aligned_cols=210 Identities=18% Similarity=0.139 Sum_probs=135.2
Q ss_pred cceEEEECC-CCCeEEEEecCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-----cCCeEE
Q 022184 65 DPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLR 137 (301)
Q Consensus 65 ~v~~~~~~~-~~~~l~~~~~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~ 137 (301)
....++.+| ....++.+-+-| ...+||..+++....+....-..+. =.-.||+||++|++.- ..|.|-
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFy-----GHg~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFY-----GHGVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEe-----cCEEEcCCCCEEEEeccccCCCcEEEE
Confidence 445788888 455666666655 5778899888765444332211111 1358999999998863 358999
Q ss_pred EEeCC-CcceecccccCCccEEEEEecCCCcEEEEEe------------------CCCcEEEEeCCCCceEEEEee---c
Q 022184 138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLTR---N 195 (301)
Q Consensus 138 v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~---~ 195 (301)
|||.. +.+.+.++..+.-....+.+.|||+.|+.+- .+..+.+.|.++|+.+..... .
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 99998 5566666666555667788999997777652 233567778888888777442 2
Q ss_pred CCCCeeEEEEccCCCcceEEEEEEeC---CcceEEEEEccCceEeeee-------eccCCCcEEEEEcCCCCEEEEee-C
Q 022184 196 SDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGS-K 264 (301)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~-~ 264 (301)
+...++-+++.++|.-.+ .+-..+. .--.|.+++... .+..+ ....+.+-++++++++.++++.+ .
T Consensus 161 ~~lSiRHLa~~~~G~V~~-a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAF-AMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred cccceeeEEecCCCcEEE-EEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 334689999999987411 0000010 011233333322 12111 23346789999999998887666 4
Q ss_pred CCcEEEEeCCCceeeccc
Q 022184 265 DGDICVVDVKKMEINHWS 282 (301)
Q Consensus 265 d~~i~i~~~~~~~~~~~~ 282 (301)
-+.+.+||..+++.+...
T Consensus 238 Gg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCEEEEEECCCCCEeecc
Confidence 578999999999888765
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.17 E-value=2.2e-07 Score=72.11 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=134.0
Q ss_pred EEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC-CCCCeEEEEecCCcE
Q 022184 9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-PSGDDFVCSTTNGGC 87 (301)
Q Consensus 9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~d~~i 87 (301)
+..|.+. .+.++.+....+ +|+.+++.+..... +. ......+++. +++ .|+.+...+ +
T Consensus 4 gp~~d~~--~g~l~~~D~~~~--------~i~~~~~~~~~~~~-------~~--~~~~~G~~~~~~~g-~l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVWDPR--DGRLYWVDIPGG--------RIYRVDPDTGEVEV-------ID--LPGPNGMAFDRPDG-RLYVADSGG-I 62 (246)
T ss_dssp EEEEETT--TTEEEEEETTTT--------EEEEEETTTTEEEE-------EE--SSSEEEEEEECTTS-EEEEEETTC-E
T ss_pred ceEEECC--CCEEEEEEcCCC--------EEEEEECCCCeEEE-------Ee--cCCCceEEEEccCC-EEEEEEcCc-e
Confidence 4567742 245555532211 67778777654321 11 1227778887 565 555555555 6
Q ss_pred EEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC--------CeEEEEeCCCcceecccccCCccEEE
Q 022184 88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHLRIMHWPSLRIILDEPKAHKSVLD 159 (301)
Q Consensus 88 ~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~i~~ 159 (301)
.++|..+++....... ..........+.+++.|+|++.++.... |.|..++.. ++. ......-.....
T Consensus 63 ~~~d~~~g~~~~~~~~--~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNG 138 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADL--PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNG 138 (246)
T ss_dssp EEEETTTTEEEEEEEE--ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEE
T ss_pred EEEecCCCcEEEEeec--cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccc
Confidence 6678777654222211 1111133567899999999977765533 557777766 443 223333356789
Q ss_pred EEecCCCcEEE-EEeCCCcEEEEeCCCCce----EEEEeecCC--CCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 160 MDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 160 ~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~----~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
++|+|+++.|+ +-+..+.|..+++..... ...+..... .....+++..+|+. .++....+.|.++|.+
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l-----~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL-----WVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E-----EEEEETTTEEEEEETT
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE-----EEEEcCCCEEEEECCC
Confidence 99999998665 556778899999864322 122221122 23778999999985 3444467899999988
Q ss_pred CceEeeeeeccCCCcEEEEEc-CCCCEEEEee
Q 022184 233 TWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS 263 (301)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 263 (301)
++.+..+......+++++|. ++.+.|++.+
T Consensus 214 -G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 214 -GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred -ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 77777777665689999994 6666665543
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=2.9e-09 Score=78.49 Aligned_cols=211 Identities=12% Similarity=0.133 Sum_probs=125.8
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
|+.+.+..+ ..++.+.......+-|..+....++........+.. .+..|.++-.+-+.+-.++.++++..||.
T Consensus 39 ~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 39 LSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCcee--eeeccCCCCCcccccccCCceEecCCCce
Confidence 555555544 244555544443455555655555544333222222 23344444444444556778999999999
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-----cCCeEEEEeCCCcceecccccCCccEEEEE
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAHKSVLDMD 161 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~ 161 (301)
+.+++.+....... ..+. .+ ..-.+.++...++.+.++. .-+..+.|+++..+....-......|.+++
T Consensus 113 ~~v~s~~~~~~~~~----~i~~-~~-~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~ 186 (319)
T KOG4714|consen 113 LAVFSTDKDLALMS----RIPS-IH-SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALC 186 (319)
T ss_pred EEEEechHHHhhhh----hccc-cc-ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhh
Confidence 99999876322110 0110 01 1112223333455555443 234566777655443322222234599999
Q ss_pred ecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 162 FSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 162 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
-+|..+ .+++|+.||.+.+||.+.......+...++.++..+-|+|..... ++++++||.+.-||..+
T Consensus 187 ~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 187 SHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST 255 (319)
T ss_pred CCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence 999544 677788999999999998866666655566789999999965432 68899999999999874
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=7.1e-10 Score=83.80 Aligned_cols=208 Identities=13% Similarity=0.156 Sum_probs=137.2
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc-ccccccc----c-----CCCCCCCCCeeEEEEeeCC--CEEEEe
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK----K-----MPPLQDAGPQKCLSFSVDG--SRFAAG 130 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~-~~~~~~~----~-----~~~~~~~~~v~~~~~s~~~--~~l~~~ 130 (301)
.+.|+++.|...|.+|++|...|+|.+|..+.... ..++... . +..+.....|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 56799999999999999999999999998765432 1211111 0 1122233568888887643 346677
Q ss_pred ecCCeEEEEeCCCcce-------------------ec----------------------c-c-ccCCccEEEEEecCCCc
Q 022184 131 GVDGHLRIMHWPSLRI-------------------IL----------------------D-E-PKAHKSVLDMDFSLDSE 167 (301)
Q Consensus 131 ~~dg~i~v~d~~~~~~-------------------~~----------------------~-~-~~~~~~i~~~~~~~~~~ 167 (301)
+.|.+|++|.+..... +. + . ..|.-.|.++.++.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 7799999998743210 00 0 0 12333577889998888
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEE---eecC----CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE----
Q 022184 168 FLATTSTDGSARIWKTEDGVAWTFL---TRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---- 236 (301)
Q Consensus 168 ~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 236 (301)
.++++ .|=.|.+|++.-......+ +.+. ...|++..|+|.....| ..++..|.|++-|++....
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f----mYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF----MYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE----EEecCCCcEEehhhhhhhhccCc
Confidence 77765 5678999998643322222 2111 12478889999877643 4456788999999984321
Q ss_pred --ee----------eeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 237 --IG----------HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 237 --~~----------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
+. -+......|..+.|+++|+++++-+. .+|+|||++..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 10 01111246888999999999999876 58999999864
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=5.3e-11 Score=101.47 Aligned_cols=213 Identities=15% Similarity=0.136 Sum_probs=152.3
Q ss_pred ccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC--
Q 022184 57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-- 134 (301)
Q Consensus 57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 134 (301)
..+..|+...+|++|+-+.++|+.|+..|.|+++++.++... .....|..+++-+.-+.||..+++.+.-.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-------~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-------ccccccccccccccccCCcceeeeeccccCc
Confidence 457788899999999999999999999999999999988752 23335778899999899999877765433
Q ss_pred eEEEEeCCC-cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC---CCCeeEEEEccCCC
Q 022184 135 HLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDGT 210 (301)
Q Consensus 135 ~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~ 210 (301)
...+|++.+ +.....+ ..-.++.|+..-..-+.|.......+||+.++.++.++.... ...-+...|+|+..
T Consensus 1168 lsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred hHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 467898754 2222222 344678888765555555556778999999998877643221 12236788999998
Q ss_pred cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCcc
Q 022184 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS 290 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~ 290 (301)
. ++. || .+||.+..+.++.+......+.. .|+|+|..++.-+. |||+++.++++.... -.
T Consensus 1244 L-----Iln---dG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ld 1303 (1516)
T KOG1832|consen 1244 L-----ILN---DG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LD 1303 (1516)
T ss_pred e-----Eee---Cc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeech-----hhhhHHHHHHhcCcc----cc
Confidence 5 332 33 38999988777666555433333 69999998888775 999999998887642 23
Q ss_pred EEEEEEccCC
Q 022184 291 IALVEFCPTQ 300 (301)
Q Consensus 291 v~~~~~spdg 300 (301)
-..+.|+..|
T Consensus 1304 qc~VtFNstG 1313 (1516)
T KOG1832|consen 1304 QCAVTFNSTG 1313 (1516)
T ss_pred ceEEEeccCc
Confidence 4466777665
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=5.7e-10 Score=85.33 Aligned_cols=151 Identities=9% Similarity=0.091 Sum_probs=111.6
Q ss_pred EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc----eecccccCC
Q 022184 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAH 154 (301)
Q Consensus 79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~ 154 (301)
++.+.+..+-+-+++++.. +.+...+.|.++.|.-.++++..|+.+|.|..+|++... ......-|.
T Consensus 228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence 4445666688889888753 344456788999999889999999999999999998652 122233567
Q ss_pred ccEEEEEecC-CCcEEEEEeCCCcEEEEeCCCCce---EEEEeecCCCC-eeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 155 ~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
+.|+++..-. ++++|++.+.+|+|++||++.-++ +..+.+|.... ..-+-..+.... ++++++|...++|
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW 373 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW 373 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence 7888888766 788999999999999999997666 77777664321 111223344443 6779999999999
Q ss_pred EccCceEeeeeecc
Q 022184 230 DISTWNKIGHKRLL 243 (301)
Q Consensus 230 d~~~~~~~~~~~~~ 243 (301)
.++.+..+.+++..
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999888766544
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=6.9e-10 Score=90.23 Aligned_cols=167 Identities=11% Similarity=0.181 Sum_probs=124.1
Q ss_pred CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-------cceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEE
Q 022184 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181 (301)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 181 (301)
..|...|+.++--.+.+.+++++.|.+|++|.++. ..+..+...|..+|.++.|-.+.++++++ |+-|.+|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 34566777776666777899999999999999853 22455677888999999999998888876 7899999
Q ss_pred eCCCCceEEEEe-ecCCCCeeEEEEccC-CCcceEEEEEEeCCcceEEEEEccCceEeeeeec-----cCCCcEEEEEcC
Q 022184 182 KTEDGVAWTFLT-RNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-----LRKPASVLSISL 254 (301)
Q Consensus 182 d~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~s~ 254 (301)
|.--+..+..+. .+..+.+..+..-++ .+. .+ ++..+...+|+++|.+..+-....+. .+..+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~-il--iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRH-IL--IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcch-he--eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 987777665442 222233445555555 333 22 34446788999999998765544433 345688999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCceeec
Q 022184 255 DGKYLAMGSKDGDICVVDVKKMEINH 280 (301)
Q Consensus 255 ~~~~l~~~~~d~~i~i~~~~~~~~~~ 280 (301)
.|++++++-.+|.|.+.|.++|+.+.
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceec
Confidence 99999999999999999999998665
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.99 E-value=5.6e-06 Score=68.66 Aligned_cols=112 Identities=19% Similarity=0.264 Sum_probs=80.1
Q ss_pred EEEEEecC-CCcEEEEE----eCCCc----EEEEeCCCCce--EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 157 VLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 157 i~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
..++.|+- +...+.+. +.+|. -.+|++...+. +.....+....+.+++++|+... ++.|+.||.
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~DgS 282 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDGS 282 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCCe
Confidence 35667765 34455543 23443 35666654432 23333445567999999999998 789999999
Q ss_pred EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
|.+||...+... .....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 283 iiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 283 IILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 999998776433 333445678899999999999999999999999864
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.8e-09 Score=82.66 Aligned_cols=211 Identities=10% Similarity=0.043 Sum_probs=145.2
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-CCeEEEEe
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH 140 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~v~d 140 (301)
|.+.|+.+... -.+++.+++.||.++.|.-..-.. ..+ ......|...+.+++.+-++.++.+.+. |..++++|
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-vEf---VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-VEF---VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-eee---hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 67777777654 467999999999999998654222 111 1122235577888888999999999887 99999999
Q ss_pred CCCcceecccc--cCCccEEEEEecCCC-c-EEEE-EeCCCcEEEEeCCCCc-eEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 141 WPSLRIILDEP--KAHKSVLDMDFSLDS-E-FLAT-TSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 141 ~~~~~~~~~~~--~~~~~i~~~~~~~~~-~-~l~~-~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+.+...+..+. .-.+.+. ...+|.. . .++. .-.++.+.++|-.... +...+..-+..+|..+.+.+.+..
T Consensus 83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds--- 158 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS--- 158 (558)
T ss_pred eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence 98765432221 1112222 2223321 1 3333 3367899999987554 444455556678999999999986
Q ss_pred EEEEEeCCcceEEEEEccC-ce-----E---------eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184 215 FCTVQRGDKALLAVYDIST-WN-----K---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~-~~-----~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
..+....|.|..|.... .+ . +..+...+....++.|+|++..+.+-+.|.+|++++.+++++.
T Consensus 159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 67777789999998763 11 1 1112223456789999999999999999999999999999887
Q ss_pred cccc
Q 022184 280 HWSK 283 (301)
Q Consensus 280 ~~~~ 283 (301)
+.+.
T Consensus 237 qeiD 240 (558)
T KOG0882|consen 237 QEID 240 (558)
T ss_pred hhhh
Confidence 7653
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.99 E-value=1.7e-07 Score=83.20 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=134.8
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.+.|.++.|..+...++.+..+|.|.+-|.++..... .-.....|.+++||||...++..+.++++.+..-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence 4689999999999999999999999999877665311 11134789999999999999999888877665420
Q ss_pred ----Cccee-------------------ccccc---------------------CCccEEEEEecCCCcEEEEEe----C
Q 022184 143 ----SLRII-------------------LDEPK---------------------AHKSVLDMDFSLDSEFLATTS----T 174 (301)
Q Consensus 143 ----~~~~~-------------------~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~----~ 174 (301)
..+.+ ..+.+ .++.=+.|.|--||+++|+.. .
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 00000 01110 011123589999999998843 2
Q ss_pred C-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---EeeeeeccCCCcEEE
Q 022184 175 D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLRKPASVL 250 (301)
Q Consensus 175 d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~~ 250 (301)
+ ..|++||-+ |. +.....+..+.-.+++|-|.|.. ++.+-..+.++.|.+|..+.-+ ..-........+..+
T Consensus 220 ~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-ch-hhcccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 3 789999976 33 23332233334568999999885 2333444567789999854322 111222233458999
Q ss_pred EEcCCCCEEEE---eeCCCcEEEEeCCCce
Q 022184 251 SISLDGKYLAM---GSKDGDICVVDVKKME 277 (301)
Q Consensus 251 ~~s~~~~~l~~---~~~d~~i~i~~~~~~~ 277 (301)
+|+.++..||+ ......|++|-+.+..
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999999998 4455569999987643
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=3.4e-09 Score=81.23 Aligned_cols=169 Identities=9% Similarity=0.028 Sum_probs=120.2
Q ss_pred EEee--CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----ceEEE
Q 022184 119 SFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----VAWTF 191 (301)
Q Consensus 119 ~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~ 191 (301)
+|+- .+.. ++.+.+-.+-+-|+.++-. ..+ ...+.|.++.|...++++..|..+|.|..+|++.+ .+...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 5654 2334 4444466788888887754 233 35578899999988899999999999999999864 33444
Q ss_pred EeecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCCCcEE--EEEcCCCCEEEEeeCC
Q 022184 192 LTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASV--LSISLDGKYLAMGSKD 265 (301)
Q Consensus 192 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~--~~~s~~~~~l~~~~~d 265 (301)
+. |+..|+++..-. ++.+ +.+++.+|+|++||++--+. +....+|-..-.- +-..+....+++++.|
T Consensus 295 ly--h~Ssvtslq~Lq~s~q~-----LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 295 LY--HDSSVTSLQILQFSQQK-----LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred EE--cCcchhhhhhhccccce-----EeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCe
Confidence 44 445688887766 5665 68889999999999987666 6666666543222 3345667789999999
Q ss_pred CcEEEEeCCCceeeccccccc--cCccEEEEEEc
Q 022184 266 GDICVVDVKKMEINHWSKRLH--LGTSIALVEFC 297 (301)
Q Consensus 266 ~~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~s 297 (301)
-..+||.+++++++..++-.. .+..+.+++|.
T Consensus 368 cytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 368 CYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999999999999988764221 02245566664
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=8.8e-07 Score=68.36 Aligned_cols=188 Identities=19% Similarity=0.194 Sum_probs=119.2
Q ss_pred CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc-cc
Q 022184 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK 152 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~ 152 (301)
++..+++++.++.+..||..+++...+.... ..+.... ..++..+++++.++.++.+|..+|+.+.+. ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP--------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECS--------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecc--------cccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence 5667777789999999999888764443321 1111111 235567777778889999999999987763 22
Q ss_pred CC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC---------eeEEEEccCCCcceEEEEEEe
Q 022184 153 AH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------IELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 153 ~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~ 220 (301)
.. ..........++..++.+..++.|..+|+++|+.+-......... +..-....++ . +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----v~~~ 179 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-R-----VYVS 179 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-E-----EEEE
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-E-----EEEE
Confidence 21 111222222237788888889999999999999988776533211 1112222233 3 4555
Q ss_pred CCcce-EEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeec
Q 022184 221 GDKAL-LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280 (301)
Q Consensus 221 ~~~~~-i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~ 280 (301)
..++. +.+ |+.+++.+-... ...+.. ...+++..|++++.++.|..||+++++..-
T Consensus 180 ~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 180 SGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred cCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 55664 555 999998663222 222222 145677888888899999999999998753
No 302
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.94 E-value=4.8e-07 Score=74.92 Aligned_cols=183 Identities=12% Similarity=0.044 Sum_probs=110.2
Q ss_pred CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (301)
Q Consensus 76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 153 (301)
..++.+..++.+..+|.++++.....................+.-+| .+..+++++.+|.++.+|..+++.+.....
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 36677777888999998877653322110000000000000011111 355788888899999999999987655431
Q ss_pred CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
.....+. .++..++.++.||.+..+|..+++.+-............... .+.. ++.++.+|.|.++|..+
T Consensus 270 -~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~-----l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 270 -SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGY-----LVVGDFEGYLHWLSRED 339 (377)
T ss_pred -CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCE-----EEEEeCCCEEEEEECCC
Confidence 1111222 246678888899999999999998765542211111222222 2444 56778899999999999
Q ss_pred ceEeeeeeccCCCcE-EEEEcCCCCEEEEeeCCCcEEEE
Q 022184 234 WNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
++.+.....+...+. ...+. + ..|+.++.||.|+.|
T Consensus 340 G~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 340 GSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 998877766554322 22332 3 358888899998876
No 303
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.94 E-value=2.3e-07 Score=76.73 Aligned_cols=191 Identities=19% Similarity=0.182 Sum_probs=117.7
Q ss_pred ccccCCcceEEEECCCCCeEEEEec---C-CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee-cC
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTT---N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD 133 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~---d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d 133 (301)
+......+..-+|+|+++.++.... . ..+.++++..++...... ..+.-...+|+|||+.|+.+. .|
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCC
Confidence 3334566888899999998775532 2 458899998877533222 223345579999999887654 45
Q ss_pred C--eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccC
Q 022184 134 G--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (301)
Q Consensus 134 g--~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (301)
| .|+++|+..++. .++....+.-..-.|+|||+.++..+. .| .|.+++++.+.. ..+...... -..-.|+||
T Consensus 260 g~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-NSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-CcCccCCCC
Confidence 5 466667776663 334444444447789999998887663 44 466667766554 334333222 237789999
Q ss_pred CCcceEEEEEEeCCcc--eEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC
Q 022184 209 GTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD 265 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 265 (301)
|+++.+ ....+| .|.+.|+.++...+.+ ..........|.|+++.+...+..
T Consensus 337 G~~i~~----~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 337 GDKIVF----ESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCEEEE----EeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEeccC
Confidence 998422 222233 3777777665533222 223334456788898877766543
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.93 E-value=2.6e-08 Score=85.66 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=130.8
Q ss_pred CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 153 (301)
++..++-|+-...+..+|+.+.+...... . ..+.+.-+.. +++.+.+|...|+|.+-|.++.+.+.++..|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~------v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH 216 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN------V-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH 216 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee------c-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc
Confidence 34566677666777788877655311110 0 1123444443 6789999999999999999999999999999
Q ss_pred CccEEEEEecCCCcEEEEEeC---------CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc
Q 022184 154 HKSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA 224 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 224 (301)
.+.|.++.. .|+.|++++. |..|+|||+|..+.+..+..+.+ ..-+.|.|.-... ++..+..|
T Consensus 217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~--P~flrf~Psl~t~----~~V~S~sG 288 (1118)
T KOG1275|consen 217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG--PQFLRFHPSLTTR----LAVTSQSG 288 (1118)
T ss_pred ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC--chhhhhcccccce----EEEEeccc
Confidence 999987665 4889999875 45689999999887776654433 4567788865432 46667778
Q ss_pred eEEEEEccCce-E---eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 225 LLAVYDISTWN-K---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 225 ~i~~~d~~~~~-~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
+..+-|..+.. + +..+......+..+++|+++..|+.|..+|.|.+|.-
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 88888833221 1 2223333455899999999999999999999999983
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.92 E-value=5.7e-09 Score=55.50 Aligned_cols=39 Identities=33% Similarity=0.360 Sum_probs=36.3
Q ss_pred ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
++++..+..|...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778999999999999999999999999999999997
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=7.7e-08 Score=75.40 Aligned_cols=81 Identities=9% Similarity=0.034 Sum_probs=64.6
Q ss_pred cccccCCcceEEEECCCCC-eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC-CEEEEeecCCe
Q 022184 58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH 135 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~ 135 (301)
.+.+|...|..++|+|..+ ++..++.+.+|+|.|+++..... .......+.+++|.-|. .+|..|..+|.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs--------sy~a~~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS--------SYIAYNQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee--------heeccCCceeeeeccCCcceeEEeccCce
Confidence 4677888999999999877 77888999999999999876522 22233788999998854 56777888999
Q ss_pred EEEEeCCCcce
Q 022184 136 LRIMHWPSLRI 146 (301)
Q Consensus 136 i~v~d~~~~~~ 146 (301)
|.+||++..+.
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999986543
No 307
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.91 E-value=1.4e-06 Score=72.21 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=117.4
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 154 (301)
+..++.++.++.+..+|.++++...+...... ....... ..... .+..++.+..++.+..+|.++++.+.......
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~~~~-~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALTLRGS-ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCC-ceeecCC-CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 45677777889999999988876444322110 0000000 11111 12467788888999999999887654332110
Q ss_pred ----c---cEEEEEecC--CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcce
Q 022184 155 ----K---SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 155 ----~---~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
. ....+.-+| .+..++.++.++.+..+|.++++.+-..... . ..... .++.. ++..+.++.
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~-~~~p~--~~~~~-----vyv~~~~G~ 290 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S-YQGPA--VDDNR-----LYVTDADGV 290 (377)
T ss_pred CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-ccCce--EeCCE-----EEEECCCCe
Confidence 0 001111112 3557777888999999999999876555421 1 11222 23444 455678999
Q ss_pred EEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184 226 LAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK 283 (301)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 283 (301)
+..+|..+++.+-...... ........ .+..|++++.+|.|+++|..+++.+....
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 9999999988764442211 22222222 46689999999999999999998876653
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.6e-07 Score=79.95 Aligned_cols=180 Identities=12% Similarity=0.205 Sum_probs=120.6
Q ss_pred eEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCc
Q 022184 7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86 (301)
Q Consensus 7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 86 (301)
++|++++.. ++++|+..+ .+.++..+.+.. ....|... ..+|.++++|+.||+
T Consensus 42 is~~av~~~-----~~~~GtH~g------~v~~~~~~~~~~----------~~~~~s~~------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 42 ISCCAVHDK-----FFALGTHRG------AVYLTTCQGNPK----------TNFDHSSS------ILEGEYVASCSDDGK 94 (846)
T ss_pred HHHHHhhcc-----eeeeccccc------eEEEEecCCccc----------cccccccc------ccCCceEEEecCCCc
Confidence 566777743 888988544 335555543321 01122222 668999999999999
Q ss_pred EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-----CCEEEEeecCCeEEEEeCC--CcceecccccCCccEEE
Q 022184 87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLD 159 (301)
Q Consensus 87 i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~ 159 (301)
|.|..+-+.+. .....-..++.+++++|+ .+.+++|+..| +.++.-+ ..+....+....++|.+
T Consensus 95 v~I~sl~~~~~--------~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~ 165 (846)
T KOG2066|consen 95 VVIGSLFTDDE--------ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHS 165 (846)
T ss_pred EEEeeccCCcc--------ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEE
Confidence 99999877764 222334578899999997 56799999888 7776532 11111124445679999
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-----CeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
+.|. |+++|-++.+| |++||+.+++.+..+..++.. ....+.|.++.+ ++.| ...+|++..++
T Consensus 166 i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~------LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 166 IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR------LVIG-WGDSVKICSIK 233 (846)
T ss_pred EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe------EEEe-cCCeEEEEEEe
Confidence 9997 78888887655 799999999888877654422 234577877776 3443 34468887776
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3e-07 Score=78.13 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=145.3
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC------------CEEEEeec
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------------SRFAAGGV 132 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~ 132 (301)
.-.++.|+|.| .||.|+.. .|.+-|..+-+.... ...|...|+.+.|.|.. -.|+++.-
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqs-------ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQS-------IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhc-------cccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 36788999987 67776554 488888876654211 12356889999997731 14667777
Q ss_pred CCeEEEEeCCCcceecccccCCccEEEEEecC---CC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccC
Q 022184 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208 (301)
Q Consensus 133 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (301)
.|.|.+||...+..+..+..+.+++..++|-| +. ..|+.-....++.+|+..+|+..-.....+. ...++.+.|-
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPf 166 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPF 166 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCC
Confidence 89999999999888888888888999999976 34 4677777778999999999998776654443 5677888885
Q ss_pred CCcceEEEEEEeCCcceEEEEEccC-------ceEeeeeeccCC-----------------C--------cEEEEEcCCC
Q 022184 209 GTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRK-----------------P--------ASVLSISLDG 256 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~i~~~d~~~-------~~~~~~~~~~~~-----------------~--------v~~~~~s~~~ 256 (301)
.... +..-+..|.+.+-+.-. ++..+....|.. + ...++|+|.-
T Consensus 167 d~rh----~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 167 DSRH----FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred Ccce----EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 5442 23334455555554321 111111111100 0 1235778987
Q ss_pred CEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 257 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
+.++.......+.++|++-...+..+ ... .+.+.=+.|-||++
T Consensus 243 rn~lfi~~prellv~dle~~~~l~vv-pie-r~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEYECCLAVV-PIE-RGGAKFVDVLPDPR 285 (1062)
T ss_pred hceEEEEeccceEEEcchhhceeEEE-Eec-cCCcceeEeccCCC
Confidence 77777777788999999876666554 222 44455566666653
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.89 E-value=1.1e-05 Score=62.79 Aligned_cols=233 Identities=15% Similarity=0.133 Sum_probs=139.4
Q ss_pred EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee--CCceeccccccCCcceEEEECCCCCeEEEEec--
Q 022184 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-- 83 (301)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-- 83 (301)
..++.+| .....++++..-+. ..+.+|..+..... .+.....|.+| -.||+||++|++.-.
T Consensus 8 H~~a~~p--~~~~avafaRRPG~-------~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 8 HGVAAHP--TRPEAVAFARRPGT-------FALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred cceeeCC--CCCeEEEEEeCCCc-------EEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEecccc
Confidence 3455564 23566676654332 24445544433321 22223344555 679999999998743
Q ss_pred ---CCcEEEEEEcCC-ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee------------------cCCeEEEEeC
Q 022184 84 ---NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------------VDGHLRIMHW 141 (301)
Q Consensus 84 ---d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~v~d~ 141 (301)
.|.|-|||.... +....+. .+.-....+.+.|||+.|+++. .+-++...|.
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~-------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFP-------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEec-------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 489999999833 2211111 1223346688999998888763 1234556677
Q ss_pred CCcceecc--c--ccCCccEEEEEecCCCcEEEEEeCCCc-------EEEEeCCCCceEEEEeec------CCCCeeEEE
Q 022184 142 PSLRIILD--E--PKAHKSVLDMDFSLDSEFLATTSTDGS-------ARIWKTEDGVAWTFLTRN------SDEKIELCR 204 (301)
Q Consensus 142 ~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~i~d~~~~~~~~~~~~~------~~~~v~~~~ 204 (301)
.+|+.+.+ + ..|+..|..+++.++|..++..-..|. +-+++ .++.+..+... -...+-+++
T Consensus 146 ~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 146 RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred CCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence 77876655 3 225568999999999876655433332 33333 33333333221 124588999
Q ss_pred EccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
+++++..+ ++++-..+.+.+||..+++.+..... ..+..++-.+++ ++++.+ .|.+....
T Consensus 224 ~~~~g~~i----a~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~~~~~~ 283 (305)
T PF07433_consen 224 ADRDGRLI----AVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQLIRLS 283 (305)
T ss_pred EeCCCCEE----EEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC-CccEEEcc
Confidence 99999862 57777889999999999988765543 345667766666 555544 45544433
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.89 E-value=6.4e-09 Score=55.29 Aligned_cols=38 Identities=29% Similarity=0.546 Sum_probs=35.3
Q ss_pred ceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe
Q 022184 145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (301)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 182 (301)
+++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56677888999999999999999999999999999997
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.89 E-value=6.8e-06 Score=67.28 Aligned_cols=231 Identities=15% Similarity=0.129 Sum_probs=129.6
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCC-CC----------CCCCeeEEEEeeCCCEEEEee
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-LQ----------DAGPQKCLSFSVDGSRFAAGG 131 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~----------~~~~v~~~~~s~~~~~l~~~~ 131 (301)
...+....|+|+|+.++... ++.|.+++..++.. .++....... .. --+.-..+.||||+++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56789999999999999874 56799998766532 1111110000 00 012336789999999988653
Q ss_pred cC-C-----------------------------------eEEEEeCCCcceec-cc----ccCCccEEEEEecCCCcEEE
Q 022184 132 VD-G-----------------------------------HLRIMHWPSLRIIL-DE----PKAHKSVLDMDFSLDSEFLA 170 (301)
Q Consensus 132 ~d-g-----------------------------------~i~v~d~~~~~~~~-~~----~~~~~~i~~~~~~~~~~~l~ 170 (301)
.| . .+.|+|+.+++... .. ......+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 22 1 13345555444311 11 12234688999999998444
Q ss_pred EE--eCCC---cEEEEeCCCCceEEEEeecCCCCe---eEEEEc-cCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 171 TT--STDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 171 ~~--~~d~---~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
.. .++. .+.+.|..++.............+ ....|. +++..+ +. +.....-..|.+++...+... .+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~-l~-~s~~~G~~hly~~~~~~~~~~-~lT 276 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF-LW-ISERDGYRHLYLYDLDGGKPR-QLT 276 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE-EE-EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE-EE-EEEcCCCcEEEEEccccccee-ccc
Confidence 43 3333 367778877766555544443333 355555 777763 22 223334456777787776643 444
Q ss_pred ccCCCcEE-EEEcCCCCEEE-EeeC----CCcEEEEeCC-CceeeccccccccCccEEEEEEccCCC
Q 022184 242 LLRKPASV-LSISLDGKYLA-MGSK----DGDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 242 ~~~~~v~~-~~~s~~~~~l~-~~~~----d~~i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
...-.|.. +.|+++++.|+ ++.. ...|+.-++. .++....... ...-..+.|||||+
T Consensus 277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGK 340 (353)
T ss_dssp -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSS
T ss_pred cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCC
Confidence 44556644 77888877655 4433 2357777777 6665554422 12226999999985
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.86 E-value=1.7e-08 Score=74.54 Aligned_cols=148 Identities=10% Similarity=0.060 Sum_probs=100.9
Q ss_pred CCCEEEEeecCCeEEEEeCCCccee-cccccCCccEEEEEecCCCcEEEEEeC-----CCcEEEEeCCCCceEEEEeecC
Q 022184 123 DGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTEDGVAWTFLTRNS 196 (301)
Q Consensus 123 ~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~ 196 (301)
.++.++++..||.+.+++.+.-..+ .+....+..-.+.+....++.+.++.- -+..+.|+++..+....-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4667999999999999987652111 111111222233334445555555432 2346677766544332222222
Q ss_pred CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-EeeeeeccCCCcEEEEEcC-CCCEEEEeeCCCcEEEEeCC
Q 022184 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~ 274 (301)
. .+.+++-+|..+++ ++.+++||.+.+||.++.. +...++.|+.+++.+-|+| ++..|+++++||.+.-||..
T Consensus 180 ~-~v~~l~~hp~qq~~----v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 D-AVTALCSHPAQQHL----VCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred c-cchhhhCCcccccE----EEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 2 38899999988874 6788999999999998864 3456788999999999999 57899999999999999987
Q ss_pred C
Q 022184 275 K 275 (301)
Q Consensus 275 ~ 275 (301)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-07 Score=74.78 Aligned_cols=232 Identities=13% Similarity=0.057 Sum_probs=154.5
Q ss_pred CcCceeEeeeCC-CcceeeeCCceeccccccCCcceEEEECCCCCeEEEEec-CCcEEEEEEcCCccccccccccCCCCC
Q 022184 33 SPSVLEIFSFDP-KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQ 110 (301)
Q Consensus 33 ~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~~w~~~~~~~~~~~~~~~~~~~~ 110 (301)
.|+.++.|.-.. .+.. ....+..|...|.+++.+-++..+.+.+. |..++++|+++-....-+. +..+
T Consensus 28 lDGh~KFWkKs~isGvE------fVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiK---L~~l- 97 (558)
T KOG0882|consen 28 LDGHKKFWKKSRISGVE------FVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIK---LVDL- 97 (558)
T ss_pred cchhhhhcCCCCcccee------ehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcc---cccC-
Confidence 666667775544 2222 23457788999999999999999999777 9999999998765421111 1111
Q ss_pred CCCCeeEEEEeeC-C-CEEEEe-ecCCeEEEEeCCCcc--eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184 111 DAGPQKCLSFSVD-G-SRFAAG-GVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 111 ~~~~v~~~~~s~~-~-~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 185 (301)
....+...+|. . ..|+++ -.++.+.++|-.... ......-|..+|..+.++|-+..+++....|.|..|....
T Consensus 98 --Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 98 --PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG 175 (558)
T ss_pred --CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence 11112222331 1 133333 357899999965432 2333345668999999999999999999999999998863
Q ss_pred ------CceEEEEee--------cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec---------
Q 022184 186 ------GVAWTFLTR--------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--------- 242 (301)
Q Consensus 186 ------~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------- 242 (301)
.+....++. .......++.|+|++.. +.+-+.|..|++++.++++.++.+..
T Consensus 176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-----istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-----ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred cccCccccccccccccchhhcccccccCccceEEccccCc-----ccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 111111110 11234789999999998 67777999999999988765322211
Q ss_pred -----------------------cC-CCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 243 -----------------------LR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 243 -----------------------~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
++ ..-+.+.|...|++|+.++.=| |++.++.++...+.+
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 11 1234578999999999998765 899999988777654
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.5e-06 Score=74.84 Aligned_cols=205 Identities=13% Similarity=0.036 Sum_probs=128.1
Q ss_pred EEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCC
Q 022184 69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS 143 (301)
Q Consensus 69 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~ 143 (301)
-+|++++..++.|+.+|.|.+.+-.-... . ..+...+ +.+..+....+.++|++.++|+ .+++|+++.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~-~-----~fqa~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLI-R-----GFQAYEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceee-e-----hheecch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 34678888999999999887776432210 0 0111111 1233333333446777777664 589999864
Q ss_pred cc------ee--ccccc-----CCccEEEEEecCCCcEEEEEeCCCcEEEEeC---CCCceEEEEeecCCCCeeEEEEcc
Q 022184 144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 144 ~~------~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~~~ 207 (301)
.+ +. ..+.. ...++.+++.+.+-+.+|.|-.+|.|..+.- |.......+......+|+.+++..
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 31 11 01111 2357889999999889999999999998852 222223344444567899999999
Q ss_pred CCCcceEEEEEEeCCcceEEEEEccCceE-eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccc
Q 022184 208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~ 286 (301)
++... ++ +++ ..+|.+|.+....+ ...+..++.++.|-.+++....+++++. ..+.+|+.+...+...+..+|
T Consensus 182 d~~s~-lF-v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 182 DGKSV-LF-VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred CCcee-EE-EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence 99863 11 222 34699999885442 3335667778888888876554555543 469999987655554443343
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.80 E-value=7e-06 Score=73.41 Aligned_cols=204 Identities=12% Similarity=0.127 Sum_probs=115.5
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEc----CCccc----------cc-cccccCCCCC-----------------
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY----GGATD----------IN-LLAKKMPPLQ----------------- 110 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~----~~~~~----------~~-~~~~~~~~~~----------------- 110 (301)
...|.+++|+||++.++..+..+++.+..-. ..+.. .. -+.+....+.
T Consensus 109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 6789999999999999988887777665431 00000 00 0000000000
Q ss_pred -----CCCCeeEEEEeeCCCEEEEee----cC-CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---CCCc
Q 022184 111 -----DAGPQKCLSFSVDGSRFAAGG----VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGS 177 (301)
Q Consensus 111 -----~~~~v~~~~~s~~~~~l~~~~----~d-g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~ 177 (301)
-...=..+.|--||.++++.. .+ ..|+|||-+ |..-..-....+.-.+++|-|.|..+++-. .|+.
T Consensus 189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 111224589999999998842 23 789999976 443222222233456899999999988854 4557
Q ss_pred EEEEeCCCCceEEEE--eecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe--eeeeccCCCcEEEEE
Q 022184 178 ARIWKTEDGVAWTFL--TRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLLRKPASVLSI 252 (301)
Q Consensus 178 i~i~d~~~~~~~~~~--~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~ 252 (301)
|.+|.-+ |-.-..+ ..+.+. .+..++|+.++..+ +..........|.+|-+.+..-. ..+...+... +.|
T Consensus 268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL--Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W 342 (1265)
T KOG1920|consen 268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL--AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMW 342 (1265)
T ss_pred EEEEecC-CccccccccCCcccccchheeeecCCCCce--eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccc
Confidence 8888743 3222222 111222 38999999999962 22223455556999998775422 2222222222 677
Q ss_pred cCCC-CEEEEeeCCCcEEEEe
Q 022184 253 SLDG-KYLAMGSKDGDICVVD 272 (301)
Q Consensus 253 s~~~-~~l~~~~~d~~i~i~~ 272 (301)
+|.. ..|.+-..+|...+++
T Consensus 343 ~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 343 DPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred cCCCceeEEEEecCCcEEEEE
Confidence 7732 2233333455544444
No 317
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=7.1e-06 Score=67.72 Aligned_cols=207 Identities=12% Similarity=0.124 Sum_probs=143.5
Q ss_pred CcceEEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec---CCeEEEE
Q 022184 64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIM 139 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~v~ 139 (301)
.....++.++.+..+... ..++.|.+.|........... .......++++|+++.+.++.. ++.+.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~--------vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP--------VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee--------eccCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 345577888888855544 445889999966554422111 1125578999999988877765 6889999
Q ss_pred eCCCcceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCceEEEEe----ecCCCCeeEEEEccCCCcceE
Q 022184 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 214 (301)
|-.+.+..........+ ..++++|+|+.++... .++.+.+.|........ -. .........+.++|+|.+.++
T Consensus 146 d~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 146 DAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 98888877765544445 8999999999666555 78899999977665553 11 112223578899999997543
Q ss_pred EEEEEeCCcceEEEEEccCceEeeeeeccCC-CcEEEEEcCCCCEEEEeeCC-CcEEEEeCCCceeeccc
Q 022184 215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKD-GDICVVDVKKMEINHWS 282 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d-~~i~i~~~~~~~~~~~~ 282 (301)
....+.++.+...|..++........... ....+..+|+|+.+.+.... +.+.+.|..+.......
T Consensus 224 --~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 224 --ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred --EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 23333357999999998776654222222 45678999999999988544 88999999887766654
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.78 E-value=1.8e-07 Score=77.18 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=81.7
Q ss_pred CcceEEEECC-CCCeEEEE----ecCCc----EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC
Q 022184 64 GDPMTIAVNP-SGDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG 134 (301)
Q Consensus 64 ~~v~~~~~~~-~~~~l~~~----~~d~~----i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 134 (301)
....++.|+. +...+.+. +.+|. -.+|++..++.. . .....+.....+.+++++|+.+.++.|+.||
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-r---vsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg 281 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-R---VSVTSIPLPSQVICCARSPSEDKLVLGCEDG 281 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-E---EEEEEEecCCcceEEecCcccceEEEEecCC
Confidence 3456777776 33344433 23332 345666544321 1 1123344667899999999999999999999
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV 187 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 187 (301)
+|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999998765432 22333457889999999999999999999999986543
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.76 E-value=2.4e-06 Score=69.88 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=118.2
Q ss_pred CCCCCeEEEEe---------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 72 NPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 72 ~~~~~~l~~~~---------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
|||+++++... ..+.+.++|+++++...... ....+....|||+|+.++... ++.|.+.+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~--------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~ 71 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP--------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA 71 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---------EETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC--------CccccccceeecCCCeeEEEe-cCceEEEECC
Confidence 57888777642 34678999998865421111 145678899999999999887 6789999987
Q ss_pred CcceecccccC-----------------CccEEEEEecCCCcEEEEEeCC-Cc---------------------------
Q 022184 143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS--------------------------- 177 (301)
Q Consensus 143 ~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d-~~--------------------------- 177 (301)
+++..+..... -+.-..+-|+||+++|+....| ..
T Consensus 72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA 151 (353)
T ss_dssp TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence 66543222111 1122467899999998876432 22
Q ss_pred --------EEEEeCCCCceEE-EEe---ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee-ccC
Q 022184 178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLR 244 (301)
Q Consensus 178 --------i~i~d~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~ 244 (301)
+.++|+.+++... ... ......+..+.|.+++..+++..+--......+.++|..++....... ...
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 2334444333211 111 112334678899999885443332223334556677876654322222 122
Q ss_pred C---CcEEEEEc-CCCC-EEEEeeCCC--cEEEEeCCCceeeccccccccCccEEE-EEEccCC
Q 022184 245 K---PASVLSIS-LDGK-YLAMGSKDG--DICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQ 300 (301)
Q Consensus 245 ~---~v~~~~~s-~~~~-~l~~~~~d~--~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~spdg 300 (301)
. .-....|. +++. ++.....+| .|.+++...+...... .+ .-.|.. +.|++++
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT-~G--~~~V~~i~~~d~~~ 292 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT-SG--DWEVTSILGWDEDN 292 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--S--SS-EEEEEEEECTS
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc-cC--ceeecccceEcCCC
Confidence 2 22355554 6554 455555666 4666777777655433 22 345644 6666654
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=5.5e-07 Score=76.74 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 192 (301)
..++|++++ +++|+.|+.+|.|++++... .. .+...|... .-+|.++++|+.||+|.|-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456677775 67899999999999998653 33 333333322 568999999999999999999888877777
Q ss_pred eecCCCCeeEEEEccC-----CCcceEEEEEEeCCcceEEEEEccC---ceEeeeeeccCCCcEEEEEcCCCCEEEEeeC
Q 022184 193 TRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSK 264 (301)
Q Consensus 193 ~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 264 (301)
..+ .++.+++++|+ .+. .++|+..| +.++..+- ...+ ......++|.++.|. |.++|-++.
T Consensus 110 df~--rpiksial~Pd~~~~~sk~-----fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 DFK--RPIKSIALHPDFSRQQSKQ-----FVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred ecC--CcceeEEeccchhhhhhhh-----eeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecC
Confidence 643 46999999998 233 57788877 77776432 1122 345556899999995 779999987
Q ss_pred CCcEEEEeCCCceeecccccc
Q 022184 265 DGDICVVDVKKMEINHWSKRL 285 (301)
Q Consensus 265 d~~i~i~~~~~~~~~~~~~~~ 285 (301)
+| |++||+.+.+.+..++..
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred CC-cEEEeccccceeeccCCC
Confidence 76 999999998877766543
No 321
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.73 E-value=2.8e-05 Score=61.21 Aligned_cols=233 Identities=14% Similarity=0.196 Sum_probs=124.9
Q ss_pred eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe----------cCCcEEEEEEcCCccccccccccCC
Q 022184 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMP 107 (301)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~~w~~~~~~~~~~~~~~~~~ 107 (301)
+++.+|.+..++.-. +. .+-.-.+..+|+++.+++++ +.-.|.+||.++......+.....+
T Consensus 18 rv~viD~d~~k~lGm------i~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 18 RVYVIDADSGKLLGM------ID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEETTTTEEEEE------EE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred eEEEEECCCCcEEEE------ee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 677777766555321 11 22334477899999888753 3457999999887654433222111
Q ss_pred CCCCCCCeeEEEEeeCCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC-
Q 022184 108 PLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE- 184 (301)
Q Consensus 108 ~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~- 184 (301)
..........++++.|++++++... ...|.|.|+...+.+..+... + +..+--.++ +.|.+.+.||.+.-..+.
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~-~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGN-RGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEET-TEEEEEETTSCEEEEEETS
T ss_pred hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCC-CceEEEecCCceEEEEECC
Confidence 1111123455688999998887643 467888888877765443211 1 111111111 224444444544444443
Q ss_pred CCceEEEE-------------------------------------------------eecC---------CCCeeEEEEc
Q 022184 185 DGVAWTFL-------------------------------------------------TRNS---------DEKIELCRFS 206 (301)
Q Consensus 185 ~~~~~~~~-------------------------------------------------~~~~---------~~~v~~~~~~ 206 (301)
.|+..... ..-. ++.-.-++++
T Consensus 167 ~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 167 DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeec
Confidence 22221110 0000 0012235566
Q ss_pred cCCCcceEEEEEEeCCc-------ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCC-EEEEe-eCCCcEEEEeCCCce
Q 022184 207 KDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKME 277 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~d~~i~i~~~~~~~ 277 (301)
+..+++|++ .-.+.+ ..|.++|+.+++.+..+.. +.++.+++.+.+.+ +|++. ..++.+.+||..+++
T Consensus 247 ~~~~rlyvL--Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 247 AASGRLYVL--MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TTTTEEEEE--EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cccCeEEEE--ecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 655554542 222222 3588899999998877765 34577899998765 55544 457899999999999
Q ss_pred eeccccc
Q 022184 278 INHWSKR 284 (301)
Q Consensus 278 ~~~~~~~ 284 (301)
+++.+..
T Consensus 324 ~~~~~~~ 330 (342)
T PF06433_consen 324 LVRSIEQ 330 (342)
T ss_dssp EEEEE--
T ss_pred EEeehhc
Confidence 9887754
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.6e-08 Score=86.89 Aligned_cols=214 Identities=13% Similarity=0.145 Sum_probs=144.3
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEe
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST 82 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 82 (301)
....-+|++|+-+ .+.+++|. ..|.++++..+.... +.....|..+|+-+.-+.+|..+++.+
T Consensus 1100 ~~~~fTc~afs~~---~~hL~vG~------~~Geik~~nv~sG~~--------e~s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGG---TNHLAVGS------HAGEIKIFNVSSGSM--------EESVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred cccceeeEEeecC---CceEEeee------ccceEEEEEccCccc--------cccccccccccccccccCCcceeeeec
Confidence 3456789999977 67999988 445568887765432 334678999999999999999777654
Q ss_pred cC--CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC----cc
Q 022184 83 TN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KS 156 (301)
Q Consensus 83 ~d--~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~ 156 (301)
.- .-..+|+....... .. .-..-.++.|+.....-+.|+......+||+.++....++.... -.
T Consensus 1163 s~S~PlsaLW~~~s~~~~-------~H---sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGP-------RH---SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred cccCchHHHhccccccCc-------cc---cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence 43 35779998653221 11 11345678898765555666666789999999988776643221 12
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
=....|+|+.++++- || .+||.+..+.++.+..-.. -..=.|+|.|.. ++..+ .|||+++.+.
T Consensus 1233 ~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~e-----VIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNE-----VIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred ccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhee--cccccccCCCce-----EEeec-----hhhhhHHHHH
Confidence 367889999887764 44 4899998877777653221 223359999997 34433 3899999887
Q ss_pred eeeeeccCCCcEEEEEcCCCCEEEEe
Q 022184 237 IGHKRLLRKPASVLSISLDGKYLAMG 262 (301)
Q Consensus 237 ~~~~~~~~~~v~~~~~s~~~~~l~~~ 262 (301)
++.....+. ..+.|+..|..++..
T Consensus 1296 Lh~VP~Ldq--c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1296 LHSVPSLDQ--CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred HhcCccccc--eEEEeccCccchhhh
Confidence 765544332 557787777765544
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.71 E-value=1.6e-06 Score=71.84 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=102.3
Q ss_pred CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe---CC-CcEEEEeCCCCceEEEEeecCCCCeeEEEEccCC
Q 022184 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209 (301)
Q Consensus 134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (301)
..+.+-|.+ +.....+......+..-+|+|+++.++..+ .. ..+.++|+.+++....... ...-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence 345555544 444444544556788889999998766543 22 4699999998877666652 2234567899999
Q ss_pred CcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCC-C--cEEEEeCCCceeeccccccc
Q 022184 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH 286 (301)
Q Consensus 210 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~--~i~i~~~~~~~~~~~~~~~~ 286 (301)
+++.+ .......-.|.++|+.+....+ +....+.-+.-.|+|||++|+..+.. | .|.+++++.....+......
T Consensus 250 ~~l~f--~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 250 SKLAF--SSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred CEEEE--EECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC
Confidence 97422 2333344567788888776433 44334444477899999998887643 3 58888888776654443222
Q ss_pred cCccEEEEEEccCCC
Q 022184 287 LGTSIALVEFCPTQR 301 (301)
Q Consensus 287 ~~~~v~~~~~spdg~ 301 (301)
.-....|+|||+
T Consensus 327 ---~~~~p~~SpdG~ 338 (425)
T COG0823 327 ---GNSNPVWSPDGD 338 (425)
T ss_pred ---CCcCccCCCCCC
Confidence 222788899885
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.3e-05 Score=69.33 Aligned_cols=202 Identities=10% Similarity=0.087 Sum_probs=122.9
Q ss_pred ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCc-ceEEEECCCCCeEEEEecCC-----cEEEEEE
Q 022184 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEV 92 (301)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~-----~i~~w~~ 92 (301)
+..+|.|+..+ +||.++..-. ....+..+... |..+-...+..+|++.+.|+ .+++|++
T Consensus 35 ~~~vvigt~~G--------~V~~Ln~s~~-------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 35 TGSVVIGTADG--------RVVILNSSFQ-------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred CceEEEeeccc--------cEEEecccce-------eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 44677766444 4555543221 12345666666 44444444446777777664 5899999
Q ss_pred cCCcccc--ccc-cccC-C-CC-CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC----CcceecccccCCccEEEEEe
Q 022184 93 YGGATDI--NLL-AKKM-P-PL-QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDF 162 (301)
Q Consensus 93 ~~~~~~~--~~~-~~~~-~-~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~----~~~~~~~~~~~~~~i~~~~~ 162 (301)
+..+... ... .... . .. ....++.+++.+.+-+.+|.|-.+|.|..+.-+ .+....-......+|+.+++
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 7653211 111 0001 1 11 134678999999998999999999999988432 12221122234469999999
Q ss_pred cCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 163 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
..+++.++....-..|.+|.+....+......+++....|..+++.... ++. +.+..+.+||.....+-..+.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-----fIc-a~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-----FIC-AGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-----EEE-ecCceEEEEcCCCcceeeeec
Confidence 9998874444455789999998555444444566667888888877663 122 234479999987555443443
No 325
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.69 E-value=4e-05 Score=61.57 Aligned_cols=253 Identities=12% Similarity=0.097 Sum_probs=119.3
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCC
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
.++.-++|.++..+..... ...+..+......++|+.+.++.......++-.|+++.+...... . ..
T Consensus 56 ~dg~~nly~lDL~t~~i~Q------LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~--~-----p~ 122 (386)
T PF14583_consen 56 FDGNRNLYLLDLATGEITQ------LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE--V-----PD 122 (386)
T ss_dssp TTSS-EEEEEETTT-EEEE---------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---------T
T ss_pred cCCCcceEEEEcccCEEEE------CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE--C-----Cc
Confidence 4556688888887765522 122222334456678888888776666678888887765421111 0 11
Q ss_pred CCeeEEEEee--CCCEEEEee----------------------cCCeEEEEeCCCcceecccccCCccEEEEEecCC-Cc
Q 022184 113 GPQKCLSFSV--DGSRFAAGG----------------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD-SE 167 (301)
Q Consensus 113 ~~v~~~~~s~--~~~~l~~~~----------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 167 (301)
.-+-...|.. |+..++-.- -...|...|+.+|+... +.....-+..+.|+|. ..
T Consensus 123 ~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~-v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 123 DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV-VFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE-EEEESS-EEEEEEETTEEE
T ss_pred ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE-EEecCccccCcccCCCCCC
Confidence 2233355543 455543221 11345556777776533 3334456778899994 45
Q ss_pred EEEEEeCC---C-cEEEEeCCC-CceEEEEeecC-CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee
Q 022184 168 FLATTSTD---G-SARIWKTED-GVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR 241 (301)
Q Consensus 168 ~l~~~~~d---~-~i~i~d~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 241 (301)
.|+.|-+. . .-|||-+++ +.....+..+. ...+.-=-|.|||..++......++.+..|.-+|+.+++......
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~ 281 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME 281 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe
Confidence 66666532 1 124554442 33333332222 223455579999998665544456667788899999876543222
Q ss_pred ccCCCcEEEEEcCCCCEEEEeeCCC----------------cEEEEeCCCceeecccc--------ccccCccEEEEEEc
Q 022184 242 LLRKPASVLSISLDGKYLAMGSKDG----------------DICVVDVKKMEINHWSK--------RLHLGTSIALVEFC 297 (301)
Q Consensus 242 ~~~~~v~~~~~s~~~~~l~~~~~d~----------------~i~i~~~~~~~~~~~~~--------~~~~~~~v~~~~~s 297 (301)
. .....+--++||++++-=+.|. -|++++++.+....... .++..-.=..+.|+
T Consensus 282 ~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FS 359 (386)
T PF14583_consen 282 M--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFS 359 (386)
T ss_dssp E---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-
T ss_pred C--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccC
Confidence 1 2345566688998776544432 46678887765432211 11101112468999
Q ss_pred cCCC
Q 022184 298 PTQR 301 (301)
Q Consensus 298 pdg~ 301 (301)
||||
T Consensus 360 PDgk 363 (386)
T PF14583_consen 360 PDGK 363 (386)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9996
No 326
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=5.3e-06 Score=64.01 Aligned_cols=181 Identities=17% Similarity=0.115 Sum_probs=108.2
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
+|+|..||..+++......... ......+. ..+++..+++++.++.|+.||..+|+.+.+.... .++.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-E
T ss_pred CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-e
Confidence 5677777777666544432110 01111111 3346677888889999999999999887665432 2211111 2
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCceEEEE-eecCC-C-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee
Q 022184 164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD-E-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240 (301)
Q Consensus 164 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 240 (301)
.++..++.++.++.+..+|.++|+.+-.. ....+ . .........++.. ++.+..++.|..+|+++++.+-..
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence 23556666778889999999999998874 32211 1 1122223333554 455666899999999999987666
Q ss_pred eccCCCc-----------EEEEEcCCCCEEEEeeCCCcEEEEeCCCceee
Q 022184 241 RLLRKPA-----------SVLSISLDGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 241 ~~~~~~v-----------~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
....... ..+.+. ++ .++.++.++.+.-+|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE
T ss_pred ecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE
Confidence 5533221 222222 44 7777777776444499999855
No 327
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=2.7e-05 Score=58.98 Aligned_cols=209 Identities=10% Similarity=0.094 Sum_probs=109.8
Q ss_pred EEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeee-CCceeccccccCCcceEEEECCCC------CeEEE
Q 022184 8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFDESEGDPMTIAVNPSG------DDFVC 80 (301)
Q Consensus 8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~------~~l~~ 80 (301)
.-++|+|| ..++|++. +.++|+++++-. ..+.. .|.... ...-..+|..+.|-+.. ..|++
T Consensus 47 Rkl~WSpD---~tlLa~a~------S~G~i~vfdl~g--~~lf~I~p~~~~-~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 47 RKLAWSPD---CTLLAYAE------STGTIRVFDLMG--SELFVIPPAMSF-PGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred eEEEECCC---CcEEEEEc------CCCeEEEEeccc--ceeEEcCccccc-CCccccceeeeEeeccccccccceeEEE
Confidence 45899988 77888866 455667776543 22211 121111 11234667888885532 24566
Q ss_pred EecCCcEEEEEEcCCccccccccccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEE
Q 022184 81 STTNGGCKLFEVYGGATDINLLAKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159 (301)
Q Consensus 81 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~ 159 (301)
-..+|.++-|-+..+....-........ ......|.++.|+|..++|++|+.... +.+. .......+++
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLta 184 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTA 184 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceE
Confidence 6788888888774332111000000111 113568999999999888887764321 0000 0011112222
Q ss_pred EEecCCCcE--EEEEeCCC------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184 160 MDFSLDSEF--LATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (301)
Q Consensus 160 ~~~~~~~~~--l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 231 (301)
-..-.+..+ .++...|+ +..+|.+-+.+.. .........|..+..||||.. +++...+|.|.+|++
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~-----La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSL-----LACIHFSGSLSLWEI 258 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccceeee-eccccCCCceEEEEECCCCCE-----EEEEEcCCeEEEEec
Confidence 222211111 11222221 1223333222111 112223446999999999997 788889999999999
Q ss_pred cCceEeeeeeccC
Q 022184 232 STWNKIGHKRLLR 244 (301)
Q Consensus 232 ~~~~~~~~~~~~~ 244 (301)
.+-+........+
T Consensus 259 PsL~~~~~W~~~e 271 (282)
T PF15492_consen 259 PSLRLQRSWKQDE 271 (282)
T ss_pred Ccchhhcccchhh
Confidence 8776655544433
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.62 E-value=1.5e-08 Score=83.98 Aligned_cols=198 Identities=15% Similarity=0.077 Sum_probs=128.6
Q ss_pred CCcceEEEECCCCC--eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEee----cCCe
Q 022184 63 EGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH 135 (301)
Q Consensus 63 ~~~v~~~~~~~~~~--~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~ 135 (301)
...+.|+++.-+.+ .++.|..+|.|-+-.+........ ...-.+..+.++++|++ |.+.||+|- .|..
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~-----E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA-----EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccc-----eecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 45577888766443 677888899999988875543211 11123457889999999 677788774 3578
Q ss_pred EEEEeCCCc--ce--eccccc-CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE-EEEeecCCCCeeEEEEcc-C
Q 022184 136 LRIMHWPSL--RI--ILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSK-D 208 (301)
Q Consensus 136 i~v~d~~~~--~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~-~ 208 (301)
+.|||+.++ .+ ...+.. ......+++|..+.+.+.+|.....++++|+|..... ..+. ...+..+...| .
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS 207 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence 999999876 11 111222 2235668999988899999999999999999843322 2222 11356677777 5
Q ss_pred CCcceEEEEEEeCCcceEEEEE-ccCceE-eeeeecc----CCCcEEEEEcCCC-CEEEEee-CCCcEEEEeCC
Q 022184 209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGS-KDGDICVVDVK 274 (301)
Q Consensus 209 ~~~~~~~~~~~~~~~~~i~~~d-~~~~~~-~~~~~~~----~~~v~~~~~s~~~-~~l~~~~-~d~~i~i~~~~ 274 (301)
+.+ +....|+.|.+|| .++-+. +..+... ...+..++|.|.. ..+++.. ..++|++|++.
T Consensus 208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 555 4455699999999 443332 2222111 2348899999953 2444444 44789999986
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.5e-06 Score=73.57 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=86.4
Q ss_pred CcceEEEECCCCCeEEEEec----CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 64 GDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
+..+-..|+|...++++++. .|.|.||-- +++.... ..-+-.+.+++|+|..-.|+.|-.-|.+.+|
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~--------Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~ 86 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRD--------VTYPVHATSLCWHPEEFVLAQGWEMGVSDVQ 86 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCCcc--------cccceehhhhccChHHHHHhhccccceeEEE
Confidence 33455789999999998864 478888753 3332111 1112235679999998889999999999999
Q ss_pred eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCC
Q 022184 140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184 (301)
Q Consensus 140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 184 (301)
...+.+.......|..+|..+.|+|+|..++++..-|.+.+|...
T Consensus 87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 987777655566788899999999999999999999999999875
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.56 E-value=7.7e-05 Score=57.11 Aligned_cols=200 Identities=12% Similarity=0.122 Sum_probs=107.8
Q ss_pred ccccCCcceEEEECCCCCeEEE-EecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEE
Q 022184 59 FDESEGDPMTIAVNPSGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR 137 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 137 (301)
+.+-...+..++|+|+.+.|++ ....+.|..++.+ ++...++. +...+..-.+++..++.++++.-.++.+.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~------l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP------LDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe------CCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 4455666999999998765554 4455666655543 33322211 12345677888887776666555689999
Q ss_pred EEeCCCcce------ec--c--cc-cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC---CceEEEEee-------cC
Q 022184 138 IMHWPSLRI------IL--D--EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTR-------NS 196 (301)
Q Consensus 138 v~d~~~~~~------~~--~--~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~-------~~ 196 (301)
++++..... .. . +. .+...+..++|+|.++.|+.+-...-..+|.++. ...+..... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 998843211 01 1 11 2334689999999887777776666667776654 222222110 11
Q ss_pred CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---------CCcEEEEEcCCCCEEEEeeCCCc
Q 022184 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGD 267 (301)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~ 267 (301)
-..+.+++++|....+ ++.+.....|..+| .+++.+..+.... ...-.++|+++|++.++. +-+.
T Consensus 170 ~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNl 243 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNL 243 (248)
T ss_dssp SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTE
T ss_pred eccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCce
Confidence 2247889999988774 35577888999999 5566655443332 246789999999655544 5666
Q ss_pred EEEE
Q 022184 268 ICVV 271 (301)
Q Consensus 268 i~i~ 271 (301)
.++|
T Consensus 244 fy~f 247 (248)
T PF06977_consen 244 FYRF 247 (248)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6655
No 331
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.56 E-value=0.0001 Score=56.48 Aligned_cols=202 Identities=11% Similarity=0.091 Sum_probs=109.8
Q ss_pred ceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC
Q 022184 5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84 (301)
Q Consensus 5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 84 (301)
..+..++|.|+. ..++++..... .|+.++.++..+. ...+.+ .+..-.|++..++.++++.-++
T Consensus 22 ~e~SGLTy~pd~--~tLfaV~d~~~--------~i~els~~G~vlr-----~i~l~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 22 DELSGLTYNPDT--GTLFAVQDEPG--------EIYELSLDGKVLR-----RIPLDG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp S-EEEEEEETTT--TEEEEEETTTT--------EEEEEETT--EEE-----EEE-SS--SSEEEEEE-STTEEEEEETTT
T ss_pred CCccccEEcCCC--CeEEEEECCCC--------EEEEEcCCCCEEE-----EEeCCC-CCCceeEEEECCCEEEEEEcCC
Confidence 348899999663 56777755322 5777877654332 233444 4568899998888777776678
Q ss_pred CcEEEEEEcCCccccccc---cccCCC-CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC---cceec-----c---
Q 022184 85 GGCKLFEVYGGATDINLL---AKKMPP-LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---LRIIL-----D--- 149 (301)
Q Consensus 85 ~~i~~w~~~~~~~~~~~~---~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~---~~~~~-----~--- 149 (301)
+.+.++++.......... .-.+.. ..++..+-.++|+|.++.|+++-+..-..+|.++. ..... .
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 999999995433211111 001111 23456789999999888888887776666666543 11110 0
Q ss_pred cccCCccEEEEEecCC-CcEEEEEeCCCcEEEEeCCCCceEEEEeecC--------CCCeeEEEEccCCCcceEEEEEEe
Q 022184 150 EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------DEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 150 ~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
.......+.+++++|. +.+++....+..+..+| .+|+.+..+.... -.....++|.++|+. ...
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L------YIv 238 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL------YIV 238 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E------EEE
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE------EEE
Confidence 1112235788999995 45666667788899999 6777766654332 124789999999973 444
Q ss_pred CCcceEEEE
Q 022184 221 GDKALLAVY 229 (301)
Q Consensus 221 ~~~~~i~~~ 229 (301)
++.+..++|
T Consensus 239 sEpNlfy~f 247 (248)
T PF06977_consen 239 SEPNLFYRF 247 (248)
T ss_dssp ETTTEEEEE
T ss_pred cCCceEEEe
Confidence 555555544
No 332
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.55 E-value=1.7e-05 Score=66.10 Aligned_cols=184 Identities=12% Similarity=0.060 Sum_probs=107.2
Q ss_pred eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (301)
Q Consensus 77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 154 (301)
.++.++.++.+..+|.++++.....................+.-+| .+..++.++.+|.+..+|..+++.+.+....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~- 285 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG- 285 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence 4555667788888888777654332110000000000011111122 3456777778999999999999876544321
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
....+.. .+..++.++.++.+..+|..+++.+-................ ++ . ++.++.+|.|...|..++
T Consensus 286 -~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-~-----l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 286 -SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-Y-----LVVGDSEGYLHWINREDG 355 (394)
T ss_pred -CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-E-----EEEEeCCCEEEEEECCCC
Confidence 1112222 456777788899999999999876543321111112222221 33 3 566788999999999999
Q ss_pred eEeeeeeccCCCcEE-EEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 235 NKIGHKRLLRKPASV-LSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 235 ~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
+.+...+.....+.+ ..+ .+..|++++.||.|+.++.
T Consensus 356 ~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 RFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 887666543333322 222 2457888899999988765
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.55 E-value=1.3e-05 Score=68.17 Aligned_cols=184 Identities=9% Similarity=0.021 Sum_probs=112.0
Q ss_pred ECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----eEEEEeCCCcc
Q 022184 71 VNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSLR 145 (301)
Q Consensus 71 ~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~~ 145 (301)
++|||+.+... -..+.+.+.|.++.+...++. -.+....+.++|+|+++++.+.+. ++...+.....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~--------Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d 271 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--------VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD 271 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEE--------eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence 45566655322 223566666766554422221 123446678999999988876322 22222221111
Q ss_pred eecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-----CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
....+.. ..+ -++.++|++... .++.|.+.|.++ .+.+..+..+ .....+.++|||+++ ++++
T Consensus 272 ~~vvfni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkyl----yVan 339 (635)
T PRK02888 272 WVVVFNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYF----IANG 339 (635)
T ss_pred eEEEEch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEE----EEeC
Confidence 1100000 000 023457776555 367899999988 3445555433 358899999999984 4677
Q ss_pred CCcceEEEEEccCceE------------eeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
..+.++.++|+.+.+. ..+... .......+|+++|+...+---|..|..||+..
T Consensus 340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7799999999987553 233333 23345678999998888888899999999876
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.53 E-value=4.3e-08 Score=81.31 Aligned_cols=207 Identities=14% Similarity=0.180 Sum_probs=127.7
Q ss_pred eeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECC-CCCeEEEEe--
Q 022184 6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST-- 82 (301)
Q Consensus 6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-- 82 (301)
-+.|++|+-+.+ .-++++|. ..|.|-+..+...... ......+|....++++|++ |.+.||+|-
T Consensus 58 y~kcva~~y~~d-~cIlavG~------atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldk 124 (783)
T KOG1008|consen 58 YVKCVASFYGND-RCILAVGS------ATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDK 124 (783)
T ss_pred CceeehhhcCCc-hhhhhhcc------ccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhh
Confidence 467888876532 24556655 3355556555332211 0123567888999999998 566777662
Q ss_pred --cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEE
Q 022184 83 --TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM 160 (301)
Q Consensus 83 --~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 160 (301)
.|..+.|||+.+.-..+..... +.. .......+++|-.+.+++.+|.....+.++|++...... ..-....+..+
T Consensus 125 hrnds~~~Iwdi~s~ltvPke~~~-fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~ 201 (783)
T KOG1008|consen 125 HRNDSSLKIWDINSLLTVPKESPL-FSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGI 201 (783)
T ss_pred hcccCCccceecccccCCCccccc-ccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccc
Confidence 3568999999876331111111 111 122445688888888899999999999999998443211 11223456777
Q ss_pred EecC-CCcEEEEEeCCCcEEEEe-CCCCce-EEEEee---cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 161 DFSL-DSEFLATTSTDGSARIWK-TEDGVA-WTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 161 ~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~-~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
...| .++++++-. |+.|.+|| .+.-+. +..+.. .....+..++|+|....+. +......++|++||+.
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgll---a~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLL---AVLSRDSITIRLYDIC 275 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchh---hhhccCcceEEEeccc
Confidence 8888 777887766 89999999 333222 221111 1112488999999876532 2334556789999975
No 335
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.49 E-value=0.00019 Score=58.29 Aligned_cols=241 Identities=11% Similarity=0.093 Sum_probs=106.7
Q ss_pred CcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEEC-----------CCCCeEEEEe-cCCcEEEEEEcCCccccc
Q 022184 33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGATDIN 100 (301)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~l~~~~-~d~~i~~w~~~~~~~~~~ 100 (301)
....+...+++++....- +......+..-.++....-|+ .+.++|+..+ .+++|+++|+.+.....+
T Consensus 35 ~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~ 113 (461)
T PF05694_consen 35 KPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR 113 (461)
T ss_dssp ---EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred CCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence 344556667777653321 111222233223456666665 2456777766 678999999986554333
Q ss_pred cccccCC-CCC---CCCCeeEEEEeeCCCEEEEeec------CCeEEEEeCCCcceecccccCC---ccEEEEEecCCCc
Q 022184 101 LLAKKMP-PLQ---DAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSE 167 (301)
Q Consensus 101 ~~~~~~~-~~~---~~~~v~~~~~s~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~ 167 (301)
+...... .+. .-.....+-.-|+|+.++++-. -|-+.++|-++.+......... ..-..+-|.|..+
T Consensus 114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n 193 (461)
T PF05694_consen 114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN 193 (461)
T ss_dssp EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence 3221110 000 1122233444568888887632 2567788877766655443322 2456788889888
Q ss_pred EEEEEeC--------------------CCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceE
Q 022184 168 FLATTST--------------------DGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL 226 (301)
Q Consensus 168 ~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (301)
.++|... ..++.+||+.+.+.++++....++ .+..+.|..+-...+-++.++ -.++|
T Consensus 194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i 271 (461)
T PF05694_consen 194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSI 271 (461)
T ss_dssp EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEE
T ss_pred EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceE
Confidence 8887642 357999999999999999865443 355677765544322222222 23344
Q ss_pred EEEEc-cCce----Eeeeeec-----------------cCCCcEEEEEcCCCCEEEEee-CCCcEEEEeCCCc
Q 022184 227 AVYDI-STWN----KIGHKRL-----------------LRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM 276 (301)
Q Consensus 227 ~~~d~-~~~~----~~~~~~~-----------------~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~~~~~~ 276 (301)
..|-. +.++ .+-.+.. ...-++.+..|.|.++|++.+ .+|.|+.||+...
T Consensus 272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 44433 3322 1111111 123478999999999998887 4799999999864
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.46 E-value=4.9e-05 Score=62.54 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=117.8
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCcccc------cc-------------------ccccCCC-----------
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI------NL-------------------LAKKMPP----------- 108 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~------~~-------------------~~~~~~~----------- 108 (301)
.|+.+.|.++...|+++...|.|.||.....+... .. ..+....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47899999998899999999999999886543211 00 0000000
Q ss_pred CCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc--cc------CCccEEEEEecC-----CC---cEEEEE
Q 022184 109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK------AHKSVLDMDFSL-----DS---EFLATT 172 (301)
Q Consensus 109 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l~~~ 172 (301)
....++|++++.|. =-++++|.++|.+.|.|++....+... .. ....++++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 01147889999874 449999999999999999876654431 11 123688888863 33 368888
Q ss_pred eCCCcEEEEeCCC---CceEEEEe---ecCCCCeeEEE-EccCCCcceEE---------------EEEEeCCcceEEEEE
Q 022184 173 STDGSARIWKTED---GVAWTFLT---RNSDEKIELCR-FSKDGTKPFLF---------------CTVQRGDKALLAVYD 230 (301)
Q Consensus 173 ~~d~~i~i~d~~~---~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~~~---------------~~~~~~~~~~i~~~d 230 (301)
...|.+.+|.+.- +.....+. .....++..+. ++.+......+ .++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998751 22211111 12233444443 43221110000 012223356799999
Q ss_pred ccCceEeeeeeccCCCcEEEEEc-----CCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 231 ISTWNKIGHKRLLRKPASVLSIS-----LDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
..+.+..............+.+- ..+..|++-..+|.|++|.+...+.+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 88777654444221223334442 35667888899999999999988776554
No 337
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.43 E-value=3.7e-05 Score=64.10 Aligned_cols=193 Identities=10% Similarity=0.088 Sum_probs=106.6
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCC-CCCCC--CCee-EEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQDA--GPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-~~~~~--~~v~-~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 150 (301)
+..+++++.++.+.-+|.++++...+....... ..... ..+. .+.. ++..++.++.+|.++-+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 557777778888888888887765443221100 00000 0010 1111 4557778888999999999999987665
Q ss_pred ccCCccEEE-EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCC----eeEEEEccCCCcceEEEEEEeCCcce
Q 022184 151 PKAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKAL 225 (301)
Q Consensus 151 ~~~~~~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
.... .+.+ ... .+..++.+..++.+..+|.++|+.+-......... ....... ++ . ++.+..++.
T Consensus 147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~-----v~~~~~~g~ 216 (394)
T PRK11138 147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-G-----AIVGGDNGR 216 (394)
T ss_pred cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-E-----EEEEcCCCE
Confidence 4332 2221 111 24456677788999999999999877665321100 0011111 12 2 345567788
Q ss_pred EEEEEccCceEeeeeeccCC-------CcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceee
Q 022184 226 LAVYDISTWNKIGHKRLLRK-------PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 226 i~~~d~~~~~~~~~~~~~~~-------~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
+..+|..+++.+-....... ....+.-+| .+..+++++.+|.+..+|..+++.+
T Consensus 217 v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 217 VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 88888888765432211100 000111122 2345555666677777777766544
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00057 Score=56.58 Aligned_cols=222 Identities=11% Similarity=0.171 Sum_probs=142.9
Q ss_pred cceEEEECCCCCeEEEEecC-CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eecCCeEEEEeCC
Q 022184 65 DPMTIAVNPSGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWP 142 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~v~d~~ 142 (301)
....+...+++..+...... ..+...+........ . ... .......++.++.++.++. ...++.|.+.|..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~--~----~~~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~ 104 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ--S----LSV-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA 104 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeee--e----ccC-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence 56678888888655544322 234444443111100 0 000 1133467788888875544 4456899999977
Q ss_pred CcceecccccCCccEEEEEecCCCcEEEEEeC---CCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEE
Q 022184 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (301)
+.+......... ....++++|+++.+..+.. ++++.+.|..+.+......... .+ ..++++|+|..++ .+
T Consensus 105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vy----v~ 177 (381)
T COG3391 105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVY----VT 177 (381)
T ss_pred ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEE----EE
Confidence 766654443333 5678999999987766654 6889999999888888754332 23 8999999999743 44
Q ss_pred eCCcceEEEEEccCceEee-e---eeccCCCcEEEEEcCCCCEEEEeeCC---CcEEEEeCCCceeeccccccccCccEE
Q 022184 220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA 292 (301)
Q Consensus 220 ~~~~~~i~~~d~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~~~~~~~~~~~~~~~~~~~~v~ 292 (301)
...++.|.+.|.......+ . ..........+.++|+|.++.+.... +.+...|..++............ ...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~ 256 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR 256 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence 4678999999977665542 1 01112345678999999977776544 58999999988777652222202 456
Q ss_pred EEEEccCCC
Q 022184 293 LVEFCPTQR 301 (301)
Q Consensus 293 ~~~~spdg~ 301 (301)
.+..+|+|+
T Consensus 257 ~v~~~p~g~ 265 (381)
T COG3391 257 GVAVDPAGK 265 (381)
T ss_pred ceeECCCCC
Confidence 677888774
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.5e-06 Score=72.37 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEE-EEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 191 (301)
..+.-+.|+|.-.+||.+..+|.|.+..++ .+.+..+.-+...++ +++|.|||+.||.|-.||+|++.|..++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999887 666777765666666 999999999999999999999999999988877
Q ss_pred EeecCCCCeeEEEEcc
Q 022184 192 LTRNSDEKIELCRFSK 207 (301)
Q Consensus 192 ~~~~~~~~v~~~~~~~ 207 (301)
........|.++-|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 5433445688888874
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.4e-05 Score=67.76 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=59.0
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
+++++|+|..-.|+.+-.-|.+.+|...+.+. ..-...|..+|..+.|||+|..++++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCcee-------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66799999888888888889999999877654 22334578899999999999999999999999999875
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=1.8e-05 Score=67.29 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=86.1
Q ss_pred EeeCCCEEEEeecCCeEEEEeCCC----cceecccccCCccEEEEEecCCCcEEEEEe-CCCcEEEEeCCCCce------
Q 022184 120 FSVDGSRFAAGGVDGHLRIMHWPS----LRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA------ 188 (301)
Q Consensus 120 ~s~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------ 188 (301)
+.++|++...+ ++.|.+.|..+ +..+.....-......++++|||+++++++ .+.++.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 34577776653 67899999887 333333334445678999999999877766 588999999987553
Q ss_pred ------EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC----------ceEeeeeeccCCCcEEE--
Q 022184 189 ------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST----------WNKIGHKRLLRKPASVL-- 250 (301)
Q Consensus 189 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~v~~~-- 250 (301)
...... +......+|.++|.. ..+---|.+|..||+.+ ...+..+..|-.+..-.
T Consensus 362 ~~~~~vvaevev--GlGPLHTaFDg~G~a-----ytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~ 434 (635)
T PRK02888 362 KPRDAVVAEPEL--GLGPLHTAFDGRGNA-----YTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS 434 (635)
T ss_pred CccceEEEeecc--CCCcceEEECCCCCE-----EEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence 233332 223567789998863 23344577899999876 23333333333221111
Q ss_pred ---EEcCCCCEEEEee
Q 022184 251 ---SISLDGKYLAMGS 263 (301)
Q Consensus 251 ---~~s~~~~~l~~~~ 263 (301)
.-.|||++|++..
T Consensus 435 ~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 435 MGETKEADGKWLVSLN 450 (635)
T ss_pred CCCcCCCCCCEEEEcc
Confidence 2267888888874
No 342
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=0.00055 Score=54.40 Aligned_cols=188 Identities=13% Similarity=0.017 Sum_probs=107.5
Q ss_pred ceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------CC
Q 022184 66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG 134 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----------dg 134 (301)
+.++..-..+..|+++ ..+ +.+++++.+.....+. . ...-......+.+...|+|.+.+.-.. -|
T Consensus 68 ~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~-~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G 143 (307)
T COG3386 68 FSSGALIDAGGRLIAC-EHG-VRLLDPDTGGKITLLA-E-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG 143 (307)
T ss_pred cccceeecCCCeEEEE-ccc-cEEEeccCCceeEEec-c-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc
Confidence 4444443344455544 444 7777775444311111 1 111112245678888999987665433 13
Q ss_pred eEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-CCcEEEEeCCC--C----ceEEEEeecCCCCeeEEEEcc
Q 022184 135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED--G----VAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 135 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~----~~~~~~~~~~~~~v~~~~~~~ 207 (301)
.|+.+|. .+..+.....+-..-+.++|+||++.|..+.. .+.|.-|++.. + +..........+..-.++...
T Consensus 144 ~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 144 SLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred eEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 3444443 34444444343445678999999987766654 47788887752 1 111122222334566778888
Q ss_pred CCCcceEEEEEEeCCc-ceEEEEEccCceEeeeeeccCCCcEEEEEc-CCCCEEEEeeC
Q 022184 208 DGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK 264 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 264 (301)
+|.. -+.+..+ +.|..|+.. ++++..+......+++++|- |+.+.|++.+.
T Consensus 223 dG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 223 DGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 8884 1133333 389999998 88888888776788888884 45555555443
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=68.15 Aligned_cols=118 Identities=13% Similarity=0.072 Sum_probs=89.2
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~ 141 (301)
|...|.--+++..+++++.|+.-|.+++|+...+...... .....+.+..+..|++..++|+|+..|.|.++-+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccc------ccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 3455666677778999999999999999998777642111 1113456677788999889999999999999987
Q ss_pred CCcceecc---c---ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184 142 PSLRIILD---E---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 142 ~~~~~~~~---~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 185 (301)
....+... . ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 65432111 1 12456899999999999999999999999888876
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.34 E-value=0.00046 Score=56.96 Aligned_cols=205 Identities=14% Similarity=0.138 Sum_probs=106.3
Q ss_pred ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcccccccccc-CCCCCCCCCeeEEEEee-----CC---CEEEE
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRFAA 129 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-----~~---~~l~~ 129 (301)
++...++|++++.|.-| ++|.|..+|.+.|.|+++........... .........++++.|+. |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 34457889999998544 89999999999999998776543322211 11222346788898874 22 35788
Q ss_pred eecCCeEEEEeCC--Ccc-ee----cccccCCccEEEEE-ecCC-----------------C---cEEEEEeCCCcEEEE
Q 022184 130 GGVDGHLRIMHWP--SLR-II----LDEPKAHKSVLDMD-FSLD-----------------S---EFLATTSTDGSARIW 181 (301)
Q Consensus 130 ~~~dg~i~v~d~~--~~~-~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~d~~i~i~ 181 (301)
|...|.+.+|.+. .+. -. .....+.++|..+. ++.+ + ..++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 8999999999874 111 11 11113344554444 3221 0 123344446889999
Q ss_pred eCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC----CCcEEEEEcCCCC
Q 022184 182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISLDGK 257 (301)
Q Consensus 182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~v~~~~~s~~~~ 257 (301)
...+.+...... ........+.+-+-.....-.+++.-..+|.+++|.+..-+.+....... ..+....++++|.
T Consensus 241 ~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 241 KPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp -TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred eCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 998887766555 22223344455321101112235666679999999999888776665532 2344567789998
Q ss_pred EEEEeeCC
Q 022184 258 YLAMGSKD 265 (301)
Q Consensus 258 ~l~~~~~d 265 (301)
.++..+..
T Consensus 320 i~~~~gps 327 (395)
T PF08596_consen 320 IFYWTGPS 327 (395)
T ss_dssp EEEE-SSS
T ss_pred EEEEeCcc
Confidence 77766543
No 345
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.33 E-value=0.0002 Score=62.26 Aligned_cols=187 Identities=13% Similarity=0.087 Sum_probs=105.3
Q ss_pred CcceEEEECCCCCeEEEEe------cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC----
Q 022184 64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---- 133 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~------~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 133 (301)
..+.+.+++|+|+.++... .|..-.||-...+.....+. .. .....-.|+|||+.|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-------~g-~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-------EG-HSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-------cC-CCCCCceECCCCCceEEEecCcceE
Confidence 4688999999999888765 24444555444322211111 11 236778999998877766432
Q ss_pred --------CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEE---EeCCCCce-E---EEEeecCCC
Q 022184 134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE 198 (301)
Q Consensus 134 --------g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~~-~---~~~~~~~~~ 198 (301)
+.+.+.+++.++... .....|..+.|+|||..++... +++|.+ -....|.. + ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 334444544443322 2345799999999999888776 477776 44444541 1 112222233
Q ss_pred CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC 269 (301)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~ 269 (301)
.+..+.|..++.. + +...+.+..+...++...... .+.. ...++..++=+++ .++....++.+.
T Consensus 498 ~~~~l~W~~~~~L-~---V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSL-V---VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEE-E---EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 3578999999984 1 223344444555555533221 1122 2355666766653 455666666333
No 346
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.0011 Score=56.84 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCcEEEEEEcCCccccccccccCC--CCCCC-----------CCe-eEEEEeeCCCEEEEeecCC---------------
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMP--PLQDA-----------GPQ-KCLSFSVDGSRFAAGGVDG--------------- 134 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~--~~~~~-----------~~v-~~~~~s~~~~~l~~~~~dg--------------- 134 (301)
++.+..+|.++++...+....... ..... ..+ ...++.+.+..++.++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 567888888877765544321100 00000 111 1345555566777776554
Q ss_pred ---eEEEEeCCCcceecccccCCccEE------EEEec----CCCc---EEEEEeCCCcEEEEeCCCCceEEEEeecCCC
Q 022184 135 ---HLRIMHWPSLRIILDEPKAHKSVL------DMDFS----LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (301)
Q Consensus 135 ---~i~v~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 198 (301)
.|.-+|.++++...+......... ...+. -++. .++.++.+|.+...|.++|+.+-......
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-- 331 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-- 331 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence 799999999998766532211111 00111 1333 57778889999999999999877654321
Q ss_pred CeeEEEEccCCCcceEEE-------------EEEeCCcceEEEEEccCceEeeeeeccC--------CCc--EEEEEcCC
Q 022184 199 KIELCRFSKDGTKPFLFC-------------TVQRGDKALLAVYDISTWNKIGHKRLLR--------KPA--SVLSISLD 255 (301)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------~~v--~~~~~s~~ 255 (301)
..++.+| ..+|+.. ......++.+.-.|+.+++.+-...... .+. ..+. -.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~ 405 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TA 405 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ec
Confidence 1123333 2211100 0012346789999999988764443321 111 1122 24
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeecccc
Q 022184 256 GKYLAMGSKDGDICVVDVKKMEINHWSK 283 (301)
Q Consensus 256 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 283 (301)
+..|++++.||.|+.+|.++|+.+-...
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 6789999999999999999999886653
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.2e-06 Score=69.22 Aligned_cols=93 Identities=23% Similarity=0.200 Sum_probs=77.7
Q ss_pred CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcE-EEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
.+..+.|+|.-.. ++.+..+|.|.+..+. ++.+-.+..++..++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus 22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 4788999999887 6888899999999988 677777777777777 99999999999999999999999999998
Q ss_pred eeccccccccCccEEEEEEcc
Q 022184 278 INHWSKRLHLGTSIALVEFCP 298 (301)
Q Consensus 278 ~~~~~~~~~~~~~v~~~~~sp 298 (301)
.+....... ...|..+-|.|
T Consensus 96 ~l~~~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSV-ETDISKGIWDR 115 (665)
T ss_pred ceecccccc-ccchheeeccc
Confidence 777643233 67788888764
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00021 Score=60.77 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=93.6
Q ss_pred ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccc
Q 022184 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98 (301)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~ 98 (301)
..++++|...+ .+|-|+..++.... ....+-.+.+..+..+++..++|.|+..|.|.++.+.....
T Consensus 45 ~~~l~~GsS~G--------~lyl~~R~~~~~~~-----~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 45 EEYLAMGSSAG--------SVYLYNRHTGEMRK-----LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred CceEEEecccc--------eEEEEecCchhhhc-----ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 45888877544 35555555443321 12233456677788899998999999999999999887433
Q ss_pred cccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcc----eecccccCCccEEEEEecCCCcEEEEEeC
Q 022184 99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTST 174 (301)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 174 (301)
............|...|++++|++++..+++|...|.|..-.+.+.. ....+....++|-.++.. ++..|++...
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~ 189 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT 189 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh
Confidence 32222112223367899999999999999999999999988877621 112222334567667665 3333333322
Q ss_pred CCcEEEEeCCC
Q 022184 175 DGSARIWKTED 185 (301)
Q Consensus 175 d~~i~i~d~~~ 185 (301)
.-.+++++.
T Consensus 190 --r~~Lc~tE~ 198 (726)
T KOG3621|consen 190 --RCILCQTEA 198 (726)
T ss_pred --hhheeecch
Confidence 234455543
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.27 E-value=0.0018 Score=54.55 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=116.9
Q ss_pred cceEEEECCCCCeEEEE-ecCC----cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------
Q 022184 65 DPMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------ 133 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~-~~d~----~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 133 (301)
.+....++|+|+++|.+ +..| .++++|+++++........ .....+.|.++++.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--------EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--------cccceEEEeCCCCEEEEEEeCcccccc
Confidence 34467899999999865 3334 5999999888653221111 112349999998887766433
Q ss_pred -----CeEEEEeCCCccee--cccccCCc-c-EEEEEecCCCcEEEEEeC---C-CcEEEEeCCCC----ceEEEEeecC
Q 022184 134 -----GHLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNS 196 (301)
Q Consensus 134 -----g~i~v~d~~~~~~~--~~~~~~~~-~-i~~~~~~~~~~~l~~~~~---d-~~i~i~d~~~~----~~~~~~~~~~ 196 (301)
..|+.|.+.+.... ..+..... . ...+..++|+++|+.... + ..+.+.|+..+ .....+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 23777887665432 22222222 2 668889999998765432 2 35788888764 2344444333
Q ss_pred CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE---eeeeeccCCCcEEEEEcCCCCEEEEe-eCCC--cEEE
Q 022184 197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DICV 270 (301)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~--~i~i 270 (301)
......+... +..+++. .--....+.|...++..... ...+..+...+.--.+...+.+|+.. ..++ .|++
T Consensus 277 ~~~~~~v~~~--~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 277 DGVEYYVDHH--GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp SS-EEEEEEE--TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred CceEEEEEcc--CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 3333334333 4432221 11223457788888876552 22344444433333344445455554 3343 6899
Q ss_pred EeCC-CceeeccccccccCccEEEEEEccC
Q 022184 271 VDVK-KMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 271 ~~~~-~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
+++. +....... ... .+.|..+...++
T Consensus 354 ~~~~~~~~~~~~~-~p~-~g~v~~~~~~~~ 381 (414)
T PF02897_consen 354 YDLDDGKESREIP-LPE-AGSVSGVSGDFD 381 (414)
T ss_dssp EETT-TEEEEEEE-SSS-SSEEEEEES-TT
T ss_pred EECCCCcEEeeec-CCc-ceEEeccCCCCC
Confidence 9998 44433332 222 444555554443
No 350
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=2e-05 Score=68.59 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=116.5
Q ss_pred CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeE
Q 022184 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202 (301)
Q Consensus 123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~ 202 (301)
++..++.|+-...+..+|+++.+..+...-..+.+.-+.. +++.+.+|...|+|.+-|.++.+.++++..|.+ .+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siS- 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SIS- 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecccc-cee-
Confidence 3456777777778888999988776555444445555544 588999999999999999999999999988765 354
Q ss_pred EEEccCCCcceEEEEEEeC---------CcceEEEEEccCceEeeeeeccCCCcEEEEEcCC-CCEEEEeeCCCcEEEEe
Q 022184 203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVD 272 (301)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~~ 272 (301)
+|+-.|+. +++.| .|.-|+|||++..+.+..+..+.++ .-+.|.|. ...+++++..|...+-|
T Consensus 222 -DfDv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 222 -DFDVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -eeeccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 45666665 33333 3567899999998877665555444 55788885 45788888899999999
Q ss_pred CCC---ceeeccccccccCccEEEEEEccCCC
Q 022184 273 VKK---MEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 273 ~~~---~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
..+ ...-....... ...+.++++|++|+
T Consensus 295 ~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPN-GSGISAFDISSNGD 325 (1118)
T ss_pred ccccCCCccceeEEccC-CCcceeEEecCCCc
Confidence 433 21111111222 44588999998874
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.8e-06 Score=64.00 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=75.4
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
+++.+..+.+...-+..+...|.+++|+|..+ ++..++.+..|+|.|+++......+..+ ..+++++|.-+..+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~-- 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV-- 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence 55555555555554555667899999999777 7888999999999999999888888765 469999999998762
Q ss_pred EEEEEeCCcceEEEEEccCce
Q 022184 215 FCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~ 235 (301)
+..|-..|.|.+||++..+
T Consensus 251 --IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 251 --IYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --eEEeccCceEEEEEccCCC
Confidence 6778889999999998754
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.26 E-value=0.0018 Score=54.12 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=82.4
Q ss_pred EEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC
Q 022184 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE 198 (301)
Q Consensus 119 ~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 198 (301)
.++.+....+....++.+.+.+-...+. + ...+++..++.||+++++|.-..+|.+.+.+..-.+....+......
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3445555555555566666554332211 2 23468999999999999999999999999987777777777655445
Q ss_pred CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCcee
Q 022184 199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278 (301)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~ 278 (301)
....+.|.-+... +..- ...+.+... ... .+.|.-++..++..-.|| ++|+.-..-+.
T Consensus 261 ~p~~~~WCG~dav------~l~~-~~~l~lvg~-----------~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~ 318 (410)
T PF04841_consen 261 PPKQMAWCGNDAV------VLSW-EDELLLVGP-----------DGD---SISFWYDGPVILVSEIDG-VRIITSTSHEF 318 (410)
T ss_pred CCcEEEEECCCcE------EEEe-CCEEEEECC-----------CCC---ceEEeccCceEEeccCCc-eEEEeCCceEE
Confidence 6777888766442 1111 222333321 111 134444444555555666 77777666665
Q ss_pred eccc
Q 022184 279 NHWS 282 (301)
Q Consensus 279 ~~~~ 282 (301)
++.+
T Consensus 319 l~~V 322 (410)
T PF04841_consen 319 LQRV 322 (410)
T ss_pred EEEC
Confidence 5544
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.00011 Score=61.29 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=88.0
Q ss_pred ccccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184 59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (301)
Q Consensus 59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 138 (301)
+....-.+..+.++|+|++++.+ .||...++.....+. ...+......|.+.+ .+|+-...+.|.+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~------------k~~G~g~~~vw~~~n-~yAv~~~~~~I~I 93 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN------------KAFGSGLSFVWSSRN-RYAVLESSSTIKI 93 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE------------EEEEE-SEEEE-TSS-EEEEE-TTS-EEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc------------cccCceeEEEEecCc-cEEEEECCCeEEE
Confidence 33445568999999999999884 677777877322211 012345678898854 5666666888999
Q ss_pred E-eCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE
Q 022184 139 M-HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT 217 (301)
Q Consensus 139 ~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 217 (301)
+ +++ .+....+... ..+..+-. |..|...+. +.|.+||..+++.+..+... +|..+.|++++.+ +
T Consensus 94 ~kn~~-~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~-----v 159 (443)
T PF04053_consen 94 YKNFK-NEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS---AVKYVIWSDDGEL-----V 159 (443)
T ss_dssp EETTE-E-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSE-----E
T ss_pred EEcCc-cccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC---CCcEEEEECCCCE-----E
Confidence 6 432 2221222221 12333322 777777665 48999999999999988633 3899999999997 3
Q ss_pred EEeCCcceEEEEEccCc-----------eEeeeeeccCCCcEEEEEcCC
Q 022184 218 VQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLD 255 (301)
Q Consensus 218 ~~~~~~~~i~~~d~~~~-----------~~~~~~~~~~~~v~~~~~s~~ 255 (301)
+..+ +..+.+++.... ............|.+.+|..|
T Consensus 160 al~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 160 ALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 3333 335666654332 012222222456777788665
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.26 E-value=0.0012 Score=55.43 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=99.0
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.+.-....|.+.+ .+|+-....+|.++.--+... ...+.....+..+-. |.+|+..+. +.|.+||+.
T Consensus 68 ~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~--------~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~ 134 (443)
T PF04053_consen 68 FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV--------VKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWE 134 (443)
T ss_dssp EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T--------T-----SS-EEEEE----SSSEEEEET-TEEEEE-TT
T ss_pred cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc--------ceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhh
Confidence 4556778999855 466666688899973221111 011111112333322 777777764 489999999
Q ss_pred CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC-----------ceEEEEeecCCCCeeEEEEccCCCc
Q 022184 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----------VAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+++.+.++... +|..+.|++++++++..+.+ .+.+++.+.. .....+..- ...|.+..|..+ .
T Consensus 135 ~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~ 208 (443)
T PF04053_consen 135 TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--C 208 (443)
T ss_dssp T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--E
T ss_pred HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcC--E
Confidence 99988877533 48999999999999988754 6777664433 123333221 335889999877 2
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCc
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~ 276 (301)
| +.+.. . +|+. +-.|+. ..+.....++.=+.+.|+.+.++....|+.|..+.+...
T Consensus 209 -f---iYtT~-~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 209 -F---IYTTS-N-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -E---EEE-T-T-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred -E---EEEcC-C-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 2 23322 3 6666 444443 234444567788888888788999999999999988643
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.0011 Score=52.82 Aligned_cols=211 Identities=12% Similarity=0.052 Sum_probs=118.7
Q ss_pred EEEECCCCCeEEEE-ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184 68 TIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (301)
Q Consensus 68 ~~~~~~~~~~l~~~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 146 (301)
+..|.++...|+-+ -..+.|.-|+..+++.. .+.....+.++..-..+..|+++. . -+.+++.+++..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---------~~~~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~ 97 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR---------VFPSPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGK 97 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE---------EEECCCCcccceeecCCCeEEEEc-c-ccEEEeccCCce
Confidence 34577777755544 45677888887755431 111223334444433444454443 2 355666655544
Q ss_pred ecccc---cC--CccEEEEEecCCCcEEEEEeC-----C----CcEEEEeCC-CCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 147 ILDEP---KA--HKSVLDMDFSLDSEFLATTST-----D----GSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 147 ~~~~~---~~--~~~i~~~~~~~~~~~l~~~~~-----d----~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
+..+. .. ....+.+...|+|.+.++... . ..-.+|-+. .+.....+..+ -...+.++||||++.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCE
Confidence 22111 11 135677888999986665443 0 112344444 44444444332 234678999999986
Q ss_pred ceEEEEEEeCCcceEEEEEccC--ceE-----eeeeeccCCCcEEEEEcCCCCEEEEeeCCC-cEEEEeCCCceeecccc
Q 022184 212 PFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSK 283 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~--~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~i~~~~~~~~~~~~~ 283 (301)
+ .++-+..+.|.-|++.. +.. ........+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+.
T Consensus 177 l----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 177 L----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred E----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 3 35556667888887752 111 111222345566788888898876555554 89999998 77777663
Q ss_pred ccccCccEEEEEEc
Q 022184 284 RLHLGTSIALVEFC 297 (301)
Q Consensus 284 ~~~~~~~v~~~~~s 297 (301)
. + ...+++++|-
T Consensus 252 l-P-~~~~t~~~Fg 263 (307)
T COG3386 252 L-P-VKRPTNPAFG 263 (307)
T ss_pred C-C-CCCCccceEe
Confidence 2 2 2556666663
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.12 E-value=0.0006 Score=60.47 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=99.2
Q ss_pred CCCEEEEe-ecCCeEEEEeCCCcceecccccCCc-cEEEEEecC-----CCcEEEEEeCCCcEEEEeCCCCc-eEEEEe-
Q 022184 123 DGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSL-----DSEFLATTSTDGSARIWKTEDGV-AWTFLT- 193 (301)
Q Consensus 123 ~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~- 193 (301)
+.++|+.- .....|+-.|++.|+.+.....+.. +|..++-.. +....+.|-.+..+..||.|-.. .+..-.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 34444443 3467899999999999888776654 355543321 13345667778899999998643 221111
Q ss_pred --ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 194 --RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 194 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
-.......|++-+.+|. ++.|+.+|.|++||.-..+....+.+.+.+|..+..+.||+||++.+. ..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEE
Confidence 11233577888888888 699999999999995443333455667899999999999999988875 467777
Q ss_pred eC
Q 022184 272 DV 273 (301)
Q Consensus 272 ~~ 273 (301)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 75
No 357
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.12 E-value=0.0059 Score=54.52 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=80.4
Q ss_pred cEEEEEecCC-CcEEEEEeC----------CCcEEEEeCCCCceEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCc
Q 022184 156 SVLDMDFSLD-SEFLATTST----------DGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDK 223 (301)
Q Consensus 156 ~i~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 223 (301)
.+.++.|..| +.++++|.. .|.|.+|.....+.+.....+ -.+.+.++.- -+|+ ..++-.
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk-------llA~In 847 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK-------LLAGIN 847 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe-------EEEecC
Confidence 3455568777 667777652 467888877764444333221 1223333322 1344 223445
Q ss_pred ceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC--ceeeccccccccCccEEEEEE
Q 022184 224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 224 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~ 296 (301)
..|++|+..+.+.++.-..+..++..+...-.|..+++|.--+++.+...+. +.........+ ....+++.+
T Consensus 848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtavei 921 (1096)
T KOG1897|consen 848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEI 921 (1096)
T ss_pred cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEE
Confidence 6899999998877766667778888999988999999998878777655543 33443332333 444544444
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.002 Score=48.62 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCe-eEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 152 (301)
-|++++.|...|.+++.+..+++....+... +.| ......+++..+..++.|++.+..|.++...+.+.+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh--------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 4778999999999999999999764443321 122 1234566899999999999999999999888887665
Q ss_pred CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184 153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 185 (301)
..+-..+-+..|-...|..+...|.+.--..+.
T Consensus 134 gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 134 GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 544445556666333344444455554444443
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.0048 Score=51.61 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=88.4
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
+.+.++.|+.+. .|++...||.++++|+.+.. ...+ ........ ....+....+..+|-.+++ .++.+.+.+--
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fsl-~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~ 155 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFSL-GEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNI 155 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eech-hhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCc
Confidence 789999998854 55566799999999987444 1111 11111111 1122223333335533333 34444443221
Q ss_pred Ccc-eeccc---ccCCc------cEEE-EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 143 SLR-IILDE---PKAHK------SVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 143 ~~~-~~~~~---~~~~~------~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
... ....+ ..... .... ..++.+....+....++.+.+.+-...+. +. ..+++..++.||++++
T Consensus 156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~ 230 (410)
T PF04841_consen 156 DEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKF 230 (410)
T ss_pred cccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCCCeEEEEECCCCCE
Confidence 111 11111 11000 0000 22333444444444455555443322111 11 2347999999999997
Q ss_pred ceEEEEEEeCCcceEEEEEccCceEeeeeecc-CCCcEEEEEcCCCC
Q 022184 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGK 257 (301)
Q Consensus 212 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~ 257 (301)
++.-..+|.+.+....-.+.+..+... ......+.|.-+..
T Consensus 231 -----iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 231 -----IALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -----EEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 344446788888876555554444433 34566777766543
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.06 E-value=0.0003 Score=61.12 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=82.3
Q ss_pred ccEEEEEecCCCcEEEEEe------CCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEE-------EEE
Q 022184 155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ 219 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~ 219 (301)
..+.+.+++|+|+.++... .|. .+.+++. .+.. ..+... .......|+|+|..++++. +..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 3678899999999887665 243 4555554 2222 333322 2377889999988643221 111
Q ss_pred eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE---EeCCCceeecc-----ccccccCccE
Q 022184 220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINHW-----SKRLHLGTSI 291 (301)
Q Consensus 220 ~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i---~~~~~~~~~~~-----~~~~~~~~~v 291 (301)
....+.+.+.+++.++... .....|..+.|||||..++... +++|++ -....++ ... +...- ...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l-~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGL-GDTA 499 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeeccc-CCcc
Confidence 1233455555665544332 3356799999999999888876 477777 5545554 221 11112 3346
Q ss_pred EEEEEccCCC
Q 022184 292 ALVEFCPTQR 301 (301)
Q Consensus 292 ~~~~~spdg~ 301 (301)
.++.|.++++
T Consensus 500 ~~l~W~~~~~ 509 (591)
T PRK13616 500 VSLDWRTGDS 509 (591)
T ss_pred ccceEecCCE
Confidence 8899988863
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0026 Score=54.65 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=113.3
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCe--eEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccccc
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ--KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK 152 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 152 (301)
+..++.++.++.+.-.|.++++...+....... ......+ ..+... ++..++.++.++.|+-+|.++++.+.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA-DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc-cccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 445666777888999998888765543321110 0000011 111111 225788888899999999999998766543
Q ss_pred CCcc--EEEEEecC--CCcEEEEEe---------CCCcEEEEeCCCCceEEEEeecCCCC-------------------e
Q 022184 153 AHKS--VLDMDFSL--DSEFLATTS---------TDGSARIWKTEDGVAWTFLTRNSDEK-------------------I 200 (301)
Q Consensus 153 ~~~~--i~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~~-------------------v 200 (301)
.... -..+.-+| .+..++.++ .++.+..+|..+|+.+-.+....... +
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 2210 01111122 123444443 36789999999999877665421110 0
Q ss_pred -eEEEEccCCCcceEEEEEEeCCc------------------ceEEEEEccCceEeeeeeccCCCc------EEEEEc--
Q 022184 201 -ELCRFSKDGTKPFLFCTVQRGDK------------------ALLAVYDISTWNKIGHKRLLRKPA------SVLSIS-- 253 (301)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~------------------~~i~~~d~~~~~~~~~~~~~~~~v------~~~~~s-- 253 (301)
...++.+.+.. ++.+..+ +.|.-+|.++++.+-......... ....+.
T Consensus 219 w~~pa~d~~~g~-----V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 219 WASPTYDPKTNL-----VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred cCCeeEeCCCCE-----EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 12333333443 2333333 379999999998875443221111 111111
Q ss_pred --CCCC---EEEEeeCCCcEEEEeCCCceeeccc
Q 022184 254 --LDGK---YLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 254 --~~~~---~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
-++. .+++++.+|.+..+|.++++.+-..
T Consensus 294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred cccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 1333 6788889999999999999877543
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=0.0022 Score=49.09 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=117.3
Q ss_pred cceEEEECCCCC-eEEEEecCCc-EEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----CCeEE
Q 022184 65 DPMTIAVNPSGD-DFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR 137 (301)
Q Consensus 65 ~v~~~~~~~~~~-~l~~~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~ 137 (301)
.-..|+|+|... -++.+-+-|+ ..++|..+.+............+- -.-.|||||.+|...-. .|.|-
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy-----GHGvfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY-----GHGVFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee-----cccccCCCCcEEEeecCCCCCCCceEE
Confidence 345688888544 4555555554 567888877665444332221111 12379999998876543 37899
Q ss_pred EEeCCCc-ceecccccCCccEEEEEecCCCcEEEEEeC------------------CCcEEEEeCCCCceEEEEeec---
Q 022184 138 IMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTRN--- 195 (301)
Q Consensus 138 v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~~--- 195 (301)
|||.+.+ +.+-.+..|.-....+.|.+||+.++.+.. .-++.+.|..+|+.+.+...+
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998743 334455555556678999999998887642 112444454555544433222
Q ss_pred CCCCeeEEEEccCCCcceEEEEEEeCCcce-EEEEEccCceEeeeee-------ccCCCcEEEEEcCCCCEEEEeeCC-C
Q 022184 196 SDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGSKD-G 266 (301)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d-~ 266 (301)
+...++.++..+||.. ++.+-.-+..+.. -.+=-...++++..+. ...+.|-+++.+.+..+++..+-. +
T Consensus 224 ~~lSiRHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcE-EEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 1224677777777774 1111111111111 0011111222222221 122456778887766666666554 4
Q ss_pred cEEEEeCCCceeecc
Q 022184 267 DICVVDVKKMEINHW 281 (301)
Q Consensus 267 ~i~i~~~~~~~~~~~ 281 (301)
...+||..++..+..
T Consensus 303 ~~vi~da~tG~vv~~ 317 (366)
T COG3490 303 RAVIWDAATGAVVSE 317 (366)
T ss_pred eEEEEEcCCCcEEec
Confidence 677999999987654
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.00 E-value=0.0034 Score=47.41 Aligned_cols=123 Identities=11% Similarity=0.002 Sum_probs=83.1
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 154 (301)
..+++.|+..+.+.--|.+++....+... ..++.+-+.- -|++++.|+..|.+++.+.++|.....+....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il--------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL--------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh--------CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34667777788888888877765333221 1222222221 46789999999999999999997766654332
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEcc
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (301)
.-=......+++..+..++.|++.+..|.++..++...+.+.. ...+-+..|
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~-~f~sP~i~~ 145 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG-TFVSPVIAP 145 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc-eeccceecC
Confidence 2111234567899999999999999999999998888664432 233445566
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.98 E-value=0.00064 Score=60.33 Aligned_cols=133 Identities=15% Similarity=0.084 Sum_probs=82.2
Q ss_pred cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC-------CCEEEEeecCCeEEEEeCCCcc-eeccc----
Q 022184 83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-------GSRFAAGGVDGHLRIMHWPSLR-IILDE---- 150 (301)
Q Consensus 83 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~~~~dg~i~v~d~~~~~-~~~~~---- 150 (301)
....|+-.|++.++........ ...+|.. +.|+ ...-+.|-.+..+..||.+-.. .+...
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~------~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVH------DDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCCceEEEecCCCcEEEEeecC------CCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 3467888888887763222111 1122333 3332 3345667778899999987532 22111
Q ss_pred ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
........|++-+.+| +||.|+.+|.||+||- .++...+....-+.+|..+..+.||+++ ++ ..+..|.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwi-----la-Tc~tyLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWI-----LA-TCKTYLLLID 645 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEE-----EE-eecceEEEEE
Confidence 1222367777777666 7999999999999994 4444333333446789999999999982 22 3345677776
Q ss_pred c
Q 022184 231 I 231 (301)
Q Consensus 231 ~ 231 (301)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 4
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0029 Score=51.24 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=111.1
Q ss_pred CCceeEEEeeeecCC----CccEEEecCCccccC----CcCceeEeeeCCCc---ceeeeCCceeccccccCCcceEEEE
Q 022184 3 GGGTVTCGSWIKRPE----NVNLVVLGKSSRASS----SPSVLEIFSFDPKT---TSVYTSPLVTYVFDESEGDPMTIAV 71 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~----~~~~~~~g~~~~~~~----~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~ 71 (301)
....++|++-..-+. ...++++|++..... ..|.+.++.+.... ..+ .... -....++|++++-
T Consensus 22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l--~~i~---~~~~~g~V~ai~~ 96 (321)
T PF03178_consen 22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL--KLIH---STEVKGPVTAICS 96 (321)
T ss_dssp TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE--EEEE---EEEESS-EEEEEE
T ss_pred CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE--EEEE---EEeecCcceEhhh
Confidence 344566655544222 257888888633321 22778888887641 111 1111 1234788999887
Q ss_pred CCCCCeEEEEecCCcEEEEEEcCCc-cccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC-cceecc
Q 022184 72 NPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILD 149 (301)
Q Consensus 72 ~~~~~~l~~~~~d~~i~~w~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~-~~~~~~ 149 (301)
- ++ +|+++ ..+.|.+|++...+ ..... . ...++...+....++++++|.....+.++.++. ...+..
T Consensus 97 ~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~------~--~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 97 F-NG-RLVVA-VGNKLYVYDLDNSKTLLKKA------F--YDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp E-TT-EEEEE-ETTEEEEEEEETTSSEEEEE------E--E-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred h-CC-EEEEe-ecCEEEEEEccCcccchhhh------e--ecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE
Confidence 6 34 45554 45779999998877 21111 1 112223344444567999999888888886543 221222
Q ss_pred cc--cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-------C--ceEEEEeecCCCCeeEE---EEccC--CCcc-
Q 022184 150 EP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------G--VAWTFLTRNSDEKIELC---RFSKD--GTKP- 212 (301)
Q Consensus 150 ~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~--~~~~~~~~~~~~~v~~~---~~~~~--~~~~- 212 (301)
+. .....++++.+-++++.++.+..+|.+.++.... + +.......+.+..|+++ .+.|. +...
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~ 245 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESP 245 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TT
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccc
Confidence 21 1234688888887667999999999999998763 2 22333334445567777 54552 2210
Q ss_pred eEEEEEEeCCcceEE
Q 022184 213 FLFCTVQRGDKALLA 227 (301)
Q Consensus 213 ~~~~~~~~~~~~~i~ 227 (301)
....++.++.+|.|.
T Consensus 246 ~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 246 NRPQILYGTVDGSIG 260 (321)
T ss_dssp EEEEEEEEETTS-EE
T ss_pred ccceEEEEecCCEEE
Confidence 011134455666666
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.94 E-value=0.0012 Score=43.22 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=66.6
Q ss_pred EEEEEecC---CC-cEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 157 i~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
|+++++.. || +.|++|+.|..|++|+- .+.+..+... ..+..+.-...++ ++.+-.+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~--~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET--DKVTSLCSLGGGR------FAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc--cceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence 45666544 43 47999999999999984 4666666644 3588887777766 4667789999999863
Q ss_pred CceEeeeeeccCCCcEEEEE-cCC--C-CEEEEeeCCCcEEE
Q 022184 233 TWNKIGHKRLLRKPASVLSI-SLD--G-KYLAMGSKDGDICV 270 (301)
Q Consensus 233 ~~~~~~~~~~~~~~v~~~~~-s~~--~-~~l~~~~~d~~i~i 270 (301)
. .+-..+. +..+.++.+ ..+ | +-|++|-.+|+|-+
T Consensus 72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 3 2222332 333555554 333 3 47888888887753
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.0045 Score=50.16 Aligned_cols=184 Identities=14% Similarity=0.189 Sum_probs=103.3
Q ss_pred CCeEEEEec----------CCcEEEEEEcCC-ccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184 75 GDDFVCSTT----------NGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (301)
Q Consensus 75 ~~~l~~~~~----------d~~i~~w~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 143 (301)
..+|+.|.. .|.|.++++... ....++. ........++|++++-- ++ .|+++. ++.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~--~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK--LIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE--EEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEE--EEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccC
Confidence 457776643 288999999884 1101111 11112245778888765 44 455444 58899999987
Q ss_pred cceecccccC--CccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEE-eecCCCCeeEEEEccCCCcceEEEEEE
Q 022184 144 LRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQ 219 (301)
Q Consensus 144 ~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 219 (301)
.+.+...... ...+.++... +++++.|..-..+.++..+. ...+..+ .......+.++.|-++++. ++.
T Consensus 117 ~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~-----~i~ 189 (321)
T PF03178_consen 117 SKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT-----IIV 189 (321)
T ss_dssp TSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE-----EEE
T ss_pred cccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE-----EEE
Confidence 7722222222 2356666555 56899998888888775543 2323333 2333445888888877754 677
Q ss_pred eCCcceEEEEEccCc---------eE--eeeeeccCCCcEEE---EEcC--CC------CEEEEeeCCCcEEEE
Q 022184 220 RGDKALLAVYDISTW---------NK--IGHKRLLRKPASVL---SISL--DG------KYLAMGSKDGDICVV 271 (301)
Q Consensus 220 ~~~~~~i~~~d~~~~---------~~--~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~d~~i~i~ 271 (301)
+..+|.+.++..... +. ...+. ....|+++ ++.| .+ ..++.++.+|.|...
T Consensus 190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 888999999887531 11 12222 23556766 5455 22 248888899988844
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=6.1e-05 Score=38.96 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=32.5
Q ss_pred eEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEe
Q 022184 235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 235 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
+....+..+...+.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455667778899999999999999999999999996
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.0006 Score=44.50 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=64.8
Q ss_pred ceEEEECC---CC-CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC
Q 022184 66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 66 v~~~~~~~---~~-~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~ 141 (301)
|+++++.. +| +.|++|+.|..|++|+-+.-. ..+.....|.++.-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------AEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------EEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 55666644 33 489999999999999854321 12223466777776665 57999999999999985
Q ss_pred CCcceecccccCCccEEEEEecC---CCc-EEEEEeCCCcEE
Q 022184 142 PSLRIILDEPKAHKSVLDMDFSL---DSE-FLATTSTDGSAR 179 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~---~~~-~l~~~~~d~~i~ 179 (301)
. +.+...... ..+.++++.. ||. .|++|-.+|.|-
T Consensus 71 ~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 S--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3 233333322 3355655543 333 688888888764
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.0082 Score=47.44 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=73.9
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc--
Q 022184 73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-- 150 (301)
Q Consensus 73 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-- 150 (301)
..++.|+.|+.+| +.+++......... ......|..+...|+-+.+++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~--------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR--------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee--------EeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4678999998888 99999933322111 11233489999999777776665 599999998754433211
Q ss_pred ------------ccCCccEEEEE--ecCCCcEEEEEeCCCcEEEEeCCCC-----ceEEEEeecCCCCeeEEEEcc
Q 022184 151 ------------PKAHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSK 207 (301)
Q Consensus 151 ------------~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~ 207 (301)
......+..++ -...+...+......+|.+|..... +....+..+ ..+..++|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~~ 148 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFLG 148 (275)
T ss_pred ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEeC
Confidence 11122444444 1123333444444568888887653 344555433 4578888883
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.86 E-value=0.0085 Score=47.68 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=95.7
Q ss_pred CeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec--ccc-
Q 022184 76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEP- 151 (301)
Q Consensus 76 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~- 151 (301)
+.+.+-+.||++.-..+.............. .....+ ...-++...+..++.-+.+|.|+-.|+....... ...
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F--~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVF--DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEES--STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CceEEEecCCceEEEEECCCCCEeEeecccc--CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 4677888999999999984433222221111 112222 2344555566667667889999988876543211 000
Q ss_pred -c--------CCccEEEEEecCCCcEEEEEeC---CC-------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcc
Q 022184 152 -K--------AHKSVLDMDFSLDSEFLATTST---DG-------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212 (301)
Q Consensus 152 -~--------~~~~i~~~~~~~~~~~l~~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (301)
. ..+.-.-+++++..+.|+..-. ++ .|.++|+.+++.+..+...+ ++.++..+.+.+=
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P- 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKP- 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS--
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCc-
Confidence 0 0123445788876555444321 11 48899999999999988643 4789999988764
Q ss_pred eEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (301)
Q Consensus 213 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 244 (301)
.+ .+....++.|.+||..+++.++.+....
T Consensus 303 ~L--~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 303 LL--YALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EE--EEEETTTTEEEEEETTT--EEEEE---S
T ss_pred EE--EEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 22 2344568899999999999887776543
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.86 E-value=0.0083 Score=48.67 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred EEEEeeCCCEEEEeec---CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEe
Q 022184 117 CLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT 193 (301)
Q Consensus 117 ~~~~s~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 193 (301)
.=+|.+||+.|+.++. ...+++.|+.+++..+-............++|+.+.++-...+..++-.|+++.+....+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3477889987776654 4567888999888754433322333356678888887766666789999999988766555
Q ss_pred ecCCCCeeEEEEc--cCCCcceEEEEEEeC-------------------CcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184 194 RNSDEKIELCRFS--KDGTKPFLFCTVQRG-------------------DKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (301)
Q Consensus 194 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (301)
.+.. .+....|. .++.. ++.+.... ..+.|.-.|+.+++... +......+..+.|
T Consensus 120 ~p~~-~~g~gt~v~n~d~t~--~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~-v~~~~~wlgH~~f 195 (386)
T PF14583_consen 120 VPDD-WKGYGTWVANSDCTK--LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV-VFEDTDWLGHVQF 195 (386)
T ss_dssp --TT-EEEEEEEEE-TTSSE--EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE-EEEESS-EEEEEE
T ss_pred CCcc-cccccceeeCCCccE--EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE-EEecCccccCccc
Confidence 4433 34445554 34443 22222222 22456777888876543 3334667888999
Q ss_pred cCCC-CEEEEeeC------CCcEEEEeCCCceeeccccccccCccEEEEEEccCCC
Q 022184 253 SLDG-KYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 253 s~~~-~~l~~~~~------d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 301 (301)
||.. ..|+.|-+ |.+|-+.+.............. ...+..=-|.|||.
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGS 250 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCC
Confidence 9965 44554422 2244444443333222221222 44566666777774
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.81 E-value=0.015 Score=48.96 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=105.3
Q ss_pred EEEECCCCCeEEEEecCC-----------cEEEEEEcCCccccccccccCCCCCCCCC-eeEEEEeeCCCEEEEeec---
Q 022184 68 TIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGP-QKCLSFSVDGSRFAAGGV--- 132 (301)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~-----------~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~--- 132 (301)
.+.|.++++.|+....+. .|+.|.+.+......+.-.. ..... ...+..++|+++|+....
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~----~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE----PDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee----cCCCcEEEEEEecCcccEEEEEEEccc
Confidence 399999999877665433 25666665544321121111 11122 567888999999876432
Q ss_pred C-CeEEEEeCCCc----ceecccccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCCCCce---EEEEeecCCCCee
Q 022184 133 D-GHLRIMHWPSL----RIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVA---WTFLTRNSDEKIE 201 (301)
Q Consensus 133 d-g~i~v~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~v~ 201 (301)
+ ..+.+.++..+ .....+......+....-+..+.+++... ..+.|...++..... ...+..+ ...+.
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~ 328 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVS 328 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEE
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCcee
Confidence 3 45788888764 12223333333333322222444444433 235677777776552 2233333 22233
Q ss_pred EEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEe--eC--CCcEEEEeCCCc
Q 022184 202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMG--SK--DGDICVVDVKKM 276 (301)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~--~~--d~~i~i~~~~~~ 276 (301)
-..+...+.+++ ....-.....|.++|+..+.....+.. ..+.+..+...+++..+... +. -+.+.-||+.++
T Consensus 329 l~~~~~~~~~Lv--l~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 329 LEDVSLFKDYLV--LSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEETTEEE--EEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEEEECCEEE--EEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 334445555533 234455567899999993333333333 23445666656666544333 21 267899999988
Q ss_pred eeec
Q 022184 277 EINH 280 (301)
Q Consensus 277 ~~~~ 280 (301)
+...
T Consensus 407 ~~~~ 410 (414)
T PF02897_consen 407 ELTL 410 (414)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7644
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=6.8e-05 Score=38.76 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=30.6
Q ss_pred ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe
Q 022184 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182 (301)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 182 (301)
...+..+...|.++.|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344455667899999999999999999999999996
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.74 E-value=0.0054 Score=47.71 Aligned_cols=148 Identities=18% Similarity=0.135 Sum_probs=91.0
Q ss_pred CeeEEEEeeCCCEEEEee---cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEe-CCCCceE
Q 022184 114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW 189 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~ 189 (301)
.+...+++++++.++... ....++++... ....... ....+....|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 678899999999887665 33455555543 3222222 223778889999987777666666666663 3333322
Q ss_pred -EEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc---Cc--e----EeeeeeccCCCcEEEEEcCCCCE
Q 022184 190 -TFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW--N----KIGHKRLLRKPASVLSISLDGKY 258 (301)
Q Consensus 190 -~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---~~--~----~~~~~~~~~~~v~~~~~s~~~~~ 258 (301)
......... .|..+.+||||..+.+ +.....++.|.+--+. .+ . ...........+..+.|.+++.+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 222222111 6999999999998433 4555556778776543 22 1 11112223457899999999987
Q ss_pred EEEeeCCC
Q 022184 259 LAMGSKDG 266 (301)
Q Consensus 259 l~~~~~d~ 266 (301)
++.+...+
T Consensus 180 ~V~~~~~~ 187 (253)
T PF10647_consen 180 VVLGRSAG 187 (253)
T ss_pred EEEeCCCC
Confidence 77775543
No 376
>PHA02713 hypothetical protein; Provisional
Probab=97.68 E-value=0.0091 Score=52.17 Aligned_cols=222 Identities=14% Similarity=0.116 Sum_probs=110.0
Q ss_pred eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC------CcEEEEEEcCCccccccccccCCCCCC
Q 022184 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQD 111 (301)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~~w~~~~~~~~~~~~~~~~~~~~~ 111 (301)
.++.|++....+...+. +...... .+++. -++..++.|+.+ ..+..||..++.-. ....+..
T Consensus 273 ~v~~yd~~~~~W~~l~~----mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~------~~~~m~~ 340 (557)
T PHA02713 273 CILVYNINTMEYSVIST----IPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV------ELPPMIK 340 (557)
T ss_pred CEEEEeCCCCeEEECCC----CCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe------eCCCCcc
Confidence 45677777766543221 1111111 12222 256666777653 34667777665321 1222211
Q ss_pred CCCeeEEEEeeCCCEEEEeecCC-----eEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCCC--------
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-------- 176 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg-----~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------- 176 (301)
.. -......-+++..+.|+.++ .+..||..+.+-.. .+.........+. -+++..+.|+.++
T Consensus 341 ~R-~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 341 NR-CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred hh-hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccc
Confidence 11 11122233677778888653 47889987654321 2211111111222 2577777777542
Q ss_pred ---------------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc------ceEEEEEccC--
Q 022184 177 ---------------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDIST-- 233 (301)
Q Consensus 177 ---------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~-- 233 (301)
.+..||.++.+-...-..... ........-+++ +| +.|+.+ ..+..||.++
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~-IY----v~GG~~~~~~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDD-IY----VVCDIKDEKNVKTCIFRYNTNTYN 491 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCE-EE----EEeCCCCCCccceeEEEecCCCCC
Confidence 467788776544322111111 111111122333 22 223322 3467899876
Q ss_pred -ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCC--cEEEEeCCCceeeccc
Q 022184 234 -WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWS 282 (301)
Q Consensus 234 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~~~~~~~~~~~~ 282 (301)
++.+..+.........+.+ +++..++|+.++ .+..||..+.+.....
T Consensus 492 ~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 492 GWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC 541 (557)
T ss_pred CeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence 4444444333333333333 788899999888 7888999887766543
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0012 Score=59.64 Aligned_cols=149 Identities=9% Similarity=-0.069 Sum_probs=94.1
Q ss_pred CcceEEEECCCCCeEEEEe--cCCcEEEEEEcCCcccccccccc----CCCCCCCCCeeEEEEeeCC-CEEEEeecCCeE
Q 022184 64 GDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHL 136 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~--~d~~i~~w~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i 136 (301)
-++..+...+|+...++.. .+-.|..||++.-.......... ...+.......++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566777778877555443 34478899987654422211111 1111223456788999853 335667779999
Q ss_pred EEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee---cCCCCeeEEEEccCCCcce
Q 022184 137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 137 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~ 213 (301)
++..+................++++|+|.|+.++.|-..|++.-|... .+....+.. .....|.++.|-....++.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 988775443333322344578999999999999999999999888653 332333322 1235789999988776533
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.012 Score=45.17 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=110.6
Q ss_pred EEECCCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeec-----------
Q 022184 69 IAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------- 132 (301)
Q Consensus 69 ~~~~~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------- 132 (301)
=.|||||.+|...-.| |.|-|||...+-... -+...|.-....+.|.+||+.++.+..
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv------gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~ 192 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV------GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRT 192 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccccccee------cccccCCcCcceeEEecCCcEEEEeCCceecccccCcc
Confidence 3589999999876443 789999987543211 111123345577899999999887742
Q ss_pred -------CCeEEEEeCCCcceecccc----cCCccEEEEEecCCCcEEEEEeCCCc-----EEEEeCCCCceEEEEeecC
Q 022184 133 -------DGHLRIMHWPSLRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGS-----ARIWKTEDGVAWTFLTRNS 196 (301)
Q Consensus 133 -------dg~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~ 196 (301)
.-++.+.|..+++.+.+.. .++-.|..++..+||+.++-+-..|. -.+=-.+.++.+.-+....
T Consensus 193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe 272 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE 272 (366)
T ss_pred ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence 1123444545555443322 23347888888888876665533221 1111122333333332221
Q ss_pred ------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184 197 ------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270 (301)
Q Consensus 197 ------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 270 (301)
...|-+++.+.+...+ .+++-..+...+||..++..+......+ ...++ +...-+++.+.+|.+.+
T Consensus 273 e~~~~~anYigsiA~n~~~glV----~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 273 EQTAAFANYIGSIAANRRDGLV----ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRIIF 344 (366)
T ss_pred HHHHHHHhhhhheeecccCCeE----EEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEEe
Confidence 1235667777655542 5666677788999999998765433221 22222 33444666677888888
Q ss_pred EeCC
Q 022184 271 VDVK 274 (301)
Q Consensus 271 ~~~~ 274 (301)
+.-.
T Consensus 345 ~s~~ 348 (366)
T COG3490 345 YSRA 348 (366)
T ss_pred cccc
Confidence 8543
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.039 Score=47.90 Aligned_cols=199 Identities=11% Similarity=0.085 Sum_probs=112.2
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCCC---CC-CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceeccc
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD---AG-PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~---~~-~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 150 (301)
+..++.++.++.|+-+|.++++...+........... .. .-..+++ .+..++.++.|+.+.-+|.++|+.+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4466666777888888888877655433211100000 00 0011222 2346777888999999999999987654
Q ss_pred ccCC-ccEEEEEecC---CCcEEEEEe------CCCcEEEEeCCCCceEEEEeecCCC----------------------
Q 022184 151 PKAH-KSVLDMDFSL---DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE---------------------- 198 (301)
Q Consensus 151 ~~~~-~~i~~~~~~~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~---------------------- 198 (301)
.... ..-..+.-+| ++. ++.+. .+|.|..+|.++|+.+-.+......
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 3211 1001111122 444 44443 2688999999999887654321110
Q ss_pred --------Ce-eEEEEccCCCcceEEEEEEeC----------C----cceEEEEEccCceEeeeeeccCCCc--------
Q 022184 199 --------KI-ELCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPA-------- 247 (301)
Q Consensus 199 --------~v-~~~~~~~~~~~~~~~~~~~~~----------~----~~~i~~~d~~~~~~~~~~~~~~~~v-------- 247 (301)
.+ ..+++.|....+| +-++. . ...|.-.|+++++..-.++...+.+
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 01 1234555444422 22221 0 1267788999998865554432221
Q ss_pred -EEEEEcCCCC---EEEEeeCCCcEEEEeCCCceee
Q 022184 248 -SVLSISLDGK---YLAMGSKDGDICVVDVKKMEIN 279 (301)
Q Consensus 248 -~~~~~s~~~~---~l~~~~~d~~i~i~~~~~~~~~ 279 (301)
.-+.+..+|+ .++.+..+|.+++.|..+++.+
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1223334665 7889999999999999999886
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.52 E-value=0.03 Score=44.45 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred ccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe
Q 022184 61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH 140 (301)
Q Consensus 61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d 140 (301)
.-.+.+..+.-+++|++++++.......-|+.- +.......+ .....|..|.|+|++.+.+.+ ..|.|+.=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~~~~r-----~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQPHNR-----NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCC--CccceEEcc-----CccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 335678889999999988887655544455532 211111111 134689999999998876655 788888877
Q ss_pred C-CCcceecc----cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee--cCCCCeeEEEEccCCCcce
Q 022184 141 W-PSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPF 213 (301)
Q Consensus 141 ~-~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 213 (301)
. ...+.-.. .....-.+.+++|.++++..++++. |. .+.....|+.-..... ......+.+.|.+..+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~--- 288 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK--- 288 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTE---
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCCc---
Confidence 2 22222111 1112235899999998887776654 43 3455566666555543 2233478888887655
Q ss_pred EEEEEEeCCcceEEEE
Q 022184 214 LFCTVQRGDKALLAVY 229 (301)
Q Consensus 214 ~~~~~~~~~~~~i~~~ 229 (301)
.+.-+.+|.|.-|
T Consensus 289 ---gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 ---GFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEE-STTEEEEE
T ss_pred ---eEEECCCcEEEEe
Confidence 3556778777655
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0034 Score=52.13 Aligned_cols=144 Identities=10% Similarity=0.037 Sum_probs=86.4
Q ss_pred CCCCeEE-EEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCC-------EEEEeecCCeEEEEeCCCc
Q 022184 73 PSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPSL 144 (301)
Q Consensus 73 ~~~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~v~d~~~~ 144 (301)
.+.+.|+ ++.....++-.|++.++....- .....|.-+.+.|+.+ .-+.|-.+..|.-||.+-.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEW--------k~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEW--------KFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEe--------eccCCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence 3444444 3334455788888877652211 1122355566666543 1244667888999998743
Q ss_pred ce-ec-ccccCC----ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEE
Q 022184 145 RI-IL-DEPKAH----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV 218 (301)
Q Consensus 145 ~~-~~-~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 218 (301)
.. .. ..+.++ ....|++-..+| +++.|+.+|.|++||- .+....+....-+.+|..+..+.+|++ +
T Consensus 415 ~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKw------i 486 (644)
T KOG2395|consen 415 GKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKW------I 486 (644)
T ss_pred CcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcE------E
Confidence 22 11 111111 245555555444 8999999999999996 555444444455668999999999997 2
Q ss_pred EeCCcceEEEEEcc
Q 022184 219 QRGDKALLAVYDIS 232 (301)
Q Consensus 219 ~~~~~~~i~~~d~~ 232 (301)
.+..+..+.+.++.
T Consensus 487 l~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATCKTYLLLIDTL 500 (644)
T ss_pred EEecccEEEEEEEe
Confidence 23345566666653
No 382
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.50 E-value=0.071 Score=48.22 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=115.4
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccCCCCC-CCCCeeEEEEee----------------CCCEEEEeecCCeEE
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV----------------DGSRFAAGGVDGHLR 137 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------------~~~~l~~~~~dg~i~ 137 (301)
+..++.++.++.|.-.|.++++...+.......... .....+.+++-. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456666677777888888777765554322111000 001122333321 345788888899999
Q ss_pred EEeCCCcceecccccCCccE-------------EEEEecC--CCcEEEEEeC----------CCcEEEEeCCCCceEEEE
Q 022184 138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL 192 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~ 192 (301)
-.|.++|+.+..+.. .+.+ ..+.-.| .+..++.++. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988755421 1111 1111122 1334555532 588999999999987766
Q ss_pred eecCC--------C--------Ce-eEEEEccCCCcceEEEE-------------EEeCCcceEEEEEccCceEeeeeec
Q 022184 193 TRNSD--------E--------KI-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 193 ~~~~~--------~--------~v-~~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~d~~~~~~~~~~~~ 242 (301)
..... + .+ ...++.+....+|+-.. ......+.|.-.|.++++..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 42110 0 00 12344444433221100 0001235677788888887654443
Q ss_pred cCCC---------cEEEEEcC-CCC---EEEEeeCCCcEEEEeCCCceeeccc
Q 022184 243 LRKP---------ASVLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 243 ~~~~---------v~~~~~s~-~~~---~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
..+. ..-+.+.. +|+ .++.++.+|.++++|.++++.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 2221 11122333 563 7999999999999999999877654
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.49 E-value=0.023 Score=42.43 Aligned_cols=136 Identities=17% Similarity=0.106 Sum_probs=80.0
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC-------CCeeEEEEccCCCcceEEEEEEeCCcceEE
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-------EKIELCRFSKDGTKPFLFCTVQRGDKALLA 227 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 227 (301)
.+..+-..+|+|++++-.-.|-.- .+....+....-+..|+- ...+.++|+.+.+..| ...+.+-.|.
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY----~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFY----YIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEE----EEccCceEEe
Confidence 356667788999985433332111 222222222222222221 2345788998877632 4556677787
Q ss_pred EEE--ccCceE-----eeeeec----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEE
Q 022184 228 VYD--ISTWNK-----IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF 296 (301)
Q Consensus 228 ~~d--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~ 296 (301)
-|| ..++.. +..++. .....-.++...+|++.++.-..++|..+|..+|+.+..+. .. ...|++++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lP-t~qitsccF 261 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LP-TPQITSCCF 261 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cC-CCceEEEEe
Confidence 777 555432 111111 01122345667788888888888999999999999988874 34 677999988
Q ss_pred c
Q 022184 297 C 297 (301)
Q Consensus 297 s 297 (301)
-
T Consensus 262 g 262 (310)
T KOG4499|consen 262 G 262 (310)
T ss_pred c
Confidence 4
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0024 Score=53.01 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=98.6
Q ss_pred eCCCEE-EEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc--E-----EEEEeCCCcEEEEeCCCCce--EEE
Q 022184 122 VDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE--F-----LATTSTDGSARIWKTEDGVA--WTF 191 (301)
Q Consensus 122 ~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-----l~~~~~d~~i~i~d~~~~~~--~~~ 191 (301)
.+.++| ..+.....++-.|++.|+.+....-+.. |.-+.+.|+.+ . -+.|-.|..|.-||.|-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 344444 4455567788899999998877655544 77778888654 2 23455788899999884332 222
Q ss_pred Eeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcE
Q 022184 192 LTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI 268 (301)
Q Consensus 192 ~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 268 (301)
...+ ......|.+-..+|. ++.++.+|.|++||.-.......+.+...+|..+..+.+|++|++.+. ..+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred eeccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEE
Confidence 1211 122355666666666 689999999999997433334456778899999999999999887764 566
Q ss_pred EEEeCC
Q 022184 269 CVVDVK 274 (301)
Q Consensus 269 ~i~~~~ 274 (301)
.+.++.
T Consensus 495 lLi~t~ 500 (644)
T KOG2395|consen 495 LLIDTL 500 (644)
T ss_pred EEEEEe
Confidence 666653
No 385
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.44 E-value=0.066 Score=46.51 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=95.6
Q ss_pred EEEEeeCCCEEEEeecC-----C-----------eEEEEeCCCcceecccccCCccE---------EEEEecCCCc---E
Q 022184 117 CLSFSVDGSRFAAGGVD-----G-----------HLRIMHWPSLRIILDEPKAHKSV---------LDMDFSLDSE---F 168 (301)
Q Consensus 117 ~~~~s~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~i---------~~~~~~~~~~---~ 168 (301)
.+++.|+..+++.+..+ + .|.-.|+++|+....++..+..+ .-+....+|+ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 34666666666665421 2 67777889998866554432222 1223334666 6
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEee------------cCCCCe----------------------------eEEEEccC
Q 022184 169 LATTSTDGSARIWKTEDGVAWTFLTR------------NSDEKI----------------------------ELCRFSKD 208 (301)
Q Consensus 169 l~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~v----------------------------~~~~~~~~ 208 (301)
++.+.++|.+.+.|-++++.+...+. ....++ ..++++|+
T Consensus 318 v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~ 397 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPK 397 (527)
T ss_pred EEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCC
Confidence 77899999999999999987622100 000000 12456665
Q ss_pred CCcceEEEEEE----------------------------eCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEE
Q 022184 209 GTKPFLFCTVQ----------------------------RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA 260 (301)
Q Consensus 209 ~~~~~~~~~~~----------------------------~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 260 (301)
...+|+-..-. ...-+.|.-+|+.+++..-............ ..-.+.+++
T Consensus 398 ~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf 476 (527)
T TIGR03075 398 TGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVF 476 (527)
T ss_pred CCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEE
Confidence 55433211000 0113568888888887664433221111121 122455777
Q ss_pred EeeCCCcEEEEeCCCceeecccc
Q 022184 261 MGSKDGDICVVDVKKMEINHWSK 283 (301)
Q Consensus 261 ~~~~d~~i~i~~~~~~~~~~~~~ 283 (301)
.++.+|.++.+|.++|+.+....
T Consensus 477 ~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 477 YGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred EECCCCeEEEEECCCCCEeEEEe
Confidence 88889999999999999887654
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00077 Score=60.35 Aligned_cols=102 Identities=9% Similarity=0.078 Sum_probs=76.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC
Q 022184 165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244 (301)
Q Consensus 165 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 244 (301)
.+..++.|+..|.+...|++..-.......+..++|++++|+.+|.. ++.|-.+|.|.+||+..++.++.+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence 46678999999999999987642211222344568999999999997 7888899999999999999888888777
Q ss_pred CCcEEEE---EcCCCCEEEEeeCCCcEEEEeC
Q 022184 245 KPASVLS---ISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 245 ~~v~~~~---~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
.+.+.+- +..++..++++..-|. +|++
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 7666543 4445567777777675 5554
No 387
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.42 E-value=0.00076 Score=36.79 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI 146 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~ 146 (301)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457899999999999999999999999998 5544
No 388
>PRK10115 protease 2; Provisional
Probab=97.38 E-value=0.098 Score=47.11 Aligned_cols=113 Identities=6% Similarity=-0.072 Sum_probs=69.9
Q ss_pred CeeEEEEeeCCCEEEEeec-----CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEe
Q 022184 114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK 182 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d 182 (301)
.+..+.|+||+++|+.+.. ...|++.|+.+++.+........ ..++|.+|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4677889999998887632 34688999988864322222212 459999999866655432 3577888
Q ss_pred CCCC--ceEEEEeecCCCCee-EEEEccCCCcceEEEEEEeCCcceEEEEEc
Q 022184 183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231 (301)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 231 (301)
+.++ +....+..... ... ....+.++++++ .-.....++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~-~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDD-TFYVSLHKTTSKHYVV--IHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCC-CEEEEEEEcCCCCEEE--EEEECCccccEEEEEC
Confidence 8877 33334433222 233 333344777643 3455556678999984
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.34 E-value=0.037 Score=41.38 Aligned_cols=136 Identities=14% Similarity=0.177 Sum_probs=84.4
Q ss_pred CCcceEEEECCCCCeEEEEecC---------CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEE-eec
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGV 132 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d---------~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~ 132 (301)
+.+.+.-..+|+|++++-.-.| |.++.|-....-. .. ...-.--+.++|+.+.+.+.. -+.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~--~i-------~~~v~IsNgl~Wd~d~K~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVE--LI-------WNCVGISNGLAWDSDAKKFYYIDSL 178 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCce--ee-------ehhccCCccccccccCcEEEEEccC
Confidence 5567777889999985532222 3344443321110 00 011123367899987776654 455
Q ss_pred CCeEEEEe--CCCcce-----eccccc----CCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCee
Q 022184 133 DGHLRIMH--WPSLRI-----ILDEPK----AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE 201 (301)
Q Consensus 133 dg~i~v~d--~~~~~~-----~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~ 201 (301)
+-+|.-|| ..+|.. +..+.. .+...-.++...+|++.+++-..++|...|..+|+.+..+..+.. .++
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 77787777 555432 222222 111233455666888888888899999999999999999988765 599
Q ss_pred EEEEccC
Q 022184 202 LCRFSKD 208 (301)
Q Consensus 202 ~~~~~~~ 208 (301)
+++|--.
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9999644
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.32 E-value=0.001 Score=36.31 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 244 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
...|..++|+|...+||.++.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456899999999999999999999999999 444
No 391
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.29 E-value=0.019 Score=48.64 Aligned_cols=125 Identities=7% Similarity=0.026 Sum_probs=73.1
Q ss_pred cccCCcceEEEECCC----CCeEEEEecCCcEEEEEEcCCcccc-ccccccCCCCCCCC--CeeEEEEeeCCCEEEEeec
Q 022184 60 DESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDI-NLLAKKMPPLQDAG--PQKCLSFSVDGSRFAAGGV 132 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~ 132 (301)
-|....|..+.|.|- ...|++......|.+|.+....... +........+...- -...+.|+|....|++-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 355667999999984 3356666677889999996322211 11110111111111 1256889998887776655
Q ss_pred CCeEEEEeCCCcc-eecccccCCccEEEEEecCCCcEEEEEeCC-CcEEEEeCC
Q 022184 133 DGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD-GSARIWKTE 184 (301)
Q Consensus 133 dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~ 184 (301)
...-.+++++... .+..-....+.|.|.+|.+||+.|+.+-.. =.-++||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4433445554322 222222556789999999999987765432 245677743
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.00088 Score=49.42 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=85.0
Q ss_pred EEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE-EE
Q 022184 127 FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC-RF 205 (301)
Q Consensus 127 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~ 205 (301)
+..-+.+|.|+-++++..+...........-.. ...-+..++.|+.+|.|.+|..................+.+. .-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhccee--ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 334455777777776544332221111111111 112345789999999999998763211111111111122222 22
Q ss_pred ccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-CCcEEEEEcCCCCEEEEe--eCCCcEEEEeCCC
Q 022184 206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMG--SKDGDICVVDVKK 275 (301)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~d~~i~i~~~~~ 275 (301)
-.++.. ..++..++.|+.|+..-.+.+.....|+ .++..+..+..+++++.+ +.|..++.|++..
T Consensus 111 ~~~~~~-----~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 111 GRDSSL-----GCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccce-----eEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 223333 6888999999999999888877777777 666777777777788887 7888888888864
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.27 E-value=0.038 Score=43.66 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=86.5
Q ss_pred CCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE----------
Q 022184 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---------- 192 (301)
Q Consensus 123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------- 192 (301)
.++.|+.|+++| +.++++......... .....|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 577899999888 899998332222222 2223499999999877777665 499999998764433311
Q ss_pred ---eecCCCCeeEEE-EccCCCcceEEEEEEeCCcceEEEEEccCc-----eEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184 193 ---TRNSDEKIELCR-FSKDGTKPFLFCTVQRGDKALLAVYDISTW-----NKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 193 ---~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
.......+...+ -........+ +.+ ....|.+|..... +...++.. ...+..++|. ++.++.|.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L---~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRL---CVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEE---EEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEe
Confidence 111111233333 1122222121 222 2337888776542 33344433 4678899998 55777776
Q ss_pred CCCcEEEEeCCCceeec
Q 022184 264 KDGDICVVDVKKMEINH 280 (301)
Q Consensus 264 ~d~~i~i~~~~~~~~~~ 280 (301)
.+ ...+.|+.++....
T Consensus 156 ~~-~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 156 SK-GFYLIDLNTGSPSE 171 (275)
T ss_pred CC-ceEEEecCCCCceE
Confidence 54 58888988765443
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.23 E-value=0.093 Score=43.67 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=58.5
Q ss_pred EEEECCCCCeEEEEecCCcEEE---EEEcCCc-cccccccccCCCCCCC--CCeeEEEEee-----------CCCEEEEe
Q 022184 68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFSV-----------DGSRFAAG 130 (301)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~~---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~s~-----------~~~~l~~~ 130 (301)
.++.+|+++.|+.+..+..+.+ |+..... ........-...+.+. ..|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677899999999877765554 4332211 1111111111222222 4666666644 35678999
Q ss_pred ecCCeEEEEeCCCcceecccccCCccEEEEEec
Q 022184 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163 (301)
Q Consensus 131 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 163 (301)
..+|.|++|.- +|..+..-.-|..+|..+...
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 676666656677788777764
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0019 Score=57.95 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccC
Q 022184 74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153 (301)
Q Consensus 74 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 153 (301)
.+-.++.++..|.+-..|+.+.-.. ........++|.+++|+.+|+.++.|-.+|.|.+||+..++..+.+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP------LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch------hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 4557888888899988888765221 1122234589999999999999999999999999999998887776655
Q ss_pred Ccc---EEEEEecCCCcEEEEEeCCCcEEEEeC
Q 022184 154 HKS---VLDMDFSLDSEFLATTSTDGSARIWKT 183 (301)
Q Consensus 154 ~~~---i~~~~~~~~~~~l~~~~~d~~i~i~d~ 183 (301)
..+ +..+.+..++..++++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 444555666667888877776 4544
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.21 E-value=0.023 Score=48.22 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=72.9
Q ss_pred CCeeEEEEeeC----CCEEEEeecCCeEEEEeCC-----CcceecccccCC-c----cEEEEEecCCCcEEEEEeCCCcE
Q 022184 113 GPQKCLSFSVD----GSRFAAGGVDGHLRIMHWP-----SLRIILDEPKAH-K----SVLDMDFSLDSEFLATTSTDGSA 178 (301)
Q Consensus 113 ~~v~~~~~s~~----~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~-~----~i~~~~~~~~~~~l~~~~~d~~i 178 (301)
..|..+.|.|- ...+++......|.||-+. +++.......+- . --..+.|+|....|+.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 56899999993 2245556667889999874 222221111110 0 12457799998888877665555
Q ss_pred EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
.+++++.............+.|.|.+|.+||+++. ++.+..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV----VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV----VAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE----EEeCCeEEEEEecCc
Confidence 66676654444444444556799999999999853 333445566788754
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.03 Score=43.40 Aligned_cols=120 Identities=12% Similarity=0.101 Sum_probs=86.2
Q ss_pred ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE
Q 022184 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD 230 (301)
Q Consensus 151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 230 (301)
.+....+.++.|+|+.+.|++......-.++=...|+.+.++....-.....+.+..++.+ .++.-.++.+.++.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~ 156 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT 156 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence 3444569999999999988888777776677667888888886544344677888888886 57777788888877
Q ss_pred ccCceEe----------eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 231 ISTWNKI----------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 231 ~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+.....+ ......+.....++|+|..+.|..+-+-+-+.||.+..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 6544221 11111245678899999998888888777777777653
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.18 E-value=0.05 Score=41.92 Aligned_cols=118 Identities=21% Similarity=0.128 Sum_probs=79.9
Q ss_pred cEEEEEecCCCcEEEEEeCCC--cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 156 SVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
-...+.|..++.++-+.+.-| .|+.+|+.+++.......+...--..++...+ .++ .-.-.++...+||..+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~----qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLY----QLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEE----EEESSSSEEEEEETTT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEE----EEEecCCeEEEEcccc
Confidence 456788877888888887665 69999999999887776655444455555544 222 3345688999999999
Q ss_pred ceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
.+.+..+.-. ..-+.++ .|++.|+.......++++|..+.+....+
T Consensus 120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEE
Confidence 9888777554 4456776 46777777777789999999887655544
No 399
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=97.16 E-value=0.0011 Score=58.47 Aligned_cols=210 Identities=14% Similarity=0.122 Sum_probs=115.8
Q ss_pred cccccCCcceEEEECC-CCCeEEEEecCCcEEEEEEcC--CccccccccccCCCCCCCCCeeEEEEee---CCCEEEEee
Q 022184 58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGG 131 (301)
Q Consensus 58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~ 131 (301)
.+++..+.|..+.|.. +-..++ ..-|.+.+|+++- ++....+........ ...+.-+.|.| +.-++..+-
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~--gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY--GSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC--CCCcceeeecccccccceeeecc
Confidence 4567778888888844 223333 2336799999864 222222222111111 12334445544 667788888
Q ss_pred cCCeEEEEeCCCcceecccccCCccEEEE-----------EecCCCcEEEEEeCCCcEEEEeCC-----CCceEEEEeec
Q 022184 132 VDGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRN 195 (301)
Q Consensus 132 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~ 195 (301)
.++++++.++++... ..+..|...+..+ ..+|||+.|+....||.++.|.+. .-.++...+.|
T Consensus 203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 899999988765433 2222343333332 268999999999999998888753 23344455555
Q ss_pred CCCCeeEEEEccCCCc-----ceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCE------------
Q 022184 196 SDEKIELCRFSKDGTK-----PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------ 258 (301)
Q Consensus 196 ~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------ 258 (301)
.+.+-.|.-|..+-.. .+.+.+.+...+..+++|....++++ +...-..+..+. -++++.
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHH
Confidence 4343333223322111 12333556666778999988877765 222223344443 223321
Q ss_pred EEEeeCCCcEEEEeCCC
Q 022184 259 LAMGSKDGDICVVDVKK 275 (301)
Q Consensus 259 l~~~~~d~~i~i~~~~~ 275 (301)
++..+-++.|.+|.-+.
T Consensus 359 ~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHhhhHHHHHHhhcch
Confidence 23345567777776443
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.1 Score=40.55 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=114.1
Q ss_pred cccCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEE
Q 022184 60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139 (301)
Q Consensus 60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~ 139 (301)
.+-...+.++.|+|+.+.|.+......-.++=...++...++... .-...-.+.|.-++.+.++--.++.+.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~------g~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------GFSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc------ccCChhHeEEecCCEEEEEehhcceEEEE
Confidence 344556999999999998888777765556555555553333211 22334557787777777776678888888
Q ss_pred eCCCcceecc----------cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE---eecC------CCCe
Q 022184 140 HWPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNS------DEKI 200 (301)
Q Consensus 140 d~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~------~~~v 200 (301)
.+........ ..........++|.|....|..+=.-.-+.||........... ..+. -..+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 7654422111 1112457889999998888888777677777766533211111 1110 0136
Q ss_pred eEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---------CCcEEEEEcCCCCEEEE
Q 022184 201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAM 261 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~ 261 (301)
.++.|.+....+ ++-+.+++.+.-.|.... .+..+..++ .....++..++|.+.++
T Consensus 236 Sgl~~~~~~~~L----LVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 236 SGLEFNAITNSL----LVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccceecCCCCcE----EEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 778888776653 466677777877776543 333332221 12345777777654333
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.21 Score=43.97 Aligned_cols=238 Identities=19% Similarity=0.209 Sum_probs=116.2
Q ss_pred ccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC------CcEEEEEE
Q 022184 19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEV 92 (301)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------~~i~~w~~ 92 (301)
..++++||.......-..++ .+++....+.... .+. +...-.+++.. ++...++|+.| .++..||.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve--~yd~~~~~w~~~a----~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVE--CYDPKTNEWSSLA----PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CeEEEECCCCCCCcccceeE--EecCCcCcEeecC----CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence 45777887654212223344 4555554443211 111 12223344443 45677888888 35666776
Q ss_pred cCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCe-----EEEEeCCCcceecccccCCccEEEEEe-cCCC
Q 022184 93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPKAHKSVLDMDF-SLDS 166 (301)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~ 166 (301)
..++- .. ...+.....-.+++ .-+|.+.++|+.||. +-.||..+.+-...-. ........+. .-+|
T Consensus 357 ~~~~W--~~----~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 357 RTNQW--TP----VAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGG 428 (571)
T ss_pred CCCce--ec----cCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECC
Confidence 66552 11 12221111111111 227888889988864 6677776554321111 1111122222 1257
Q ss_pred cEEEEEeCCC------cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc-----eEEEEEccCce
Q 022184 167 EFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN 235 (301)
Q Consensus 167 ~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~ 235 (301)
...+.|+.++ ++..||..+.+....-.......-..++.- ++.. .+.||.++ +|..||..+.+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~i-----YvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKI-----YVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEE-----EEECCccCCCccceEEEEcCCCCc
Confidence 8888888554 477888877654333222111111222222 2222 24555444 37778877654
Q ss_pred E--eeeeeccCCCcEEEEEcCCCCEEEEeeCCC-----cEEEEeCCCceeec
Q 022184 236 K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINH 280 (301)
Q Consensus 236 ~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~~~~~~~~~~ 280 (301)
- +.........+....+ +++..++|+.|| +|..||..+.+...
T Consensus 503 W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred eeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceee
Confidence 3 2222222223222222 577888888775 58888887765443
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.95 E-value=0.17 Score=41.85 Aligned_cols=190 Identities=17% Similarity=0.177 Sum_probs=88.2
Q ss_pred ceEEEECCCCCeEEEEec--C----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee--------
Q 022184 66 PMTIAVNPSGDDFVCSTT--N----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------- 131 (301)
Q Consensus 66 v~~~~~~~~~~~l~~~~~--d----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------- 131 (301)
...+..-|+|+.++++-. + |-+.+.|-++.+...+-... ......-+.+-|.|..+.+++..
T Consensus 132 PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~ 207 (461)
T PF05694_consen 132 PHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFE 207 (461)
T ss_dssp EEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHT
T ss_pred CceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC----CCCCCCCCCeEEcCCCCEEEEeccCChhhcc
Confidence 445556688988887632 2 45666665544432211110 01123346778888777777753
Q ss_pred ------------cCCeEEEEeCCCcceecccccCC--ccEEEEEec--CCCcE-EEEEeCCCcEEEEeC-CCCceEE---
Q 022184 132 ------------VDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFS--LDSEF-LATTSTDGSARIWKT-EDGVAWT--- 190 (301)
Q Consensus 132 ------------~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~-l~~~~~d~~i~i~d~-~~~~~~~--- 190 (301)
...++.+||+.+.+.++.+.-.. .....+.|. |+..+ ++.+.-.++|..|-- +.++-..
T Consensus 208 ~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 208 KGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp T---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEE
T ss_pred cCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEE
Confidence 24689999999998877765443 235566664 44444 444444455554433 4443211
Q ss_pred -EEeec--------C--------CCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce---Eeeeeec--------
Q 022184 191 -FLTRN--------S--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRL-------- 242 (301)
Q Consensus 191 -~~~~~--------~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~-------- 242 (301)
.+... . ..-++.+..|.|.+++| ++.-..|.|+.||+.... ...+...
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~ 363 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD 363 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence 11100 0 23478999999999854 556678999999987532 2222211
Q ss_pred --------cCCCcEEEEEcCCCCEEEEee
Q 022184 243 --------LRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 243 --------~~~~v~~~~~s~~~~~l~~~~ 263 (301)
..+...-+..|.||+.|++.+
T Consensus 364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -TTS------S----EEE-TTSSEEEEE-
T ss_pred CccccccccCCCCCeEEEccCCeEEEEEe
Confidence 112346788999999888765
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.93 E-value=0.051 Score=47.50 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=71.9
Q ss_pred EEEEeeCCCEEEEeecCCeEEEEeCCCcceecccc-cCCccEEEEEec--CCCcEEEEEeCCCcEEEEeCC---------
Q 022184 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTE--------- 184 (301)
Q Consensus 117 ~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~d~~--------- 184 (301)
-+.-|.-++..++-+....+.|||.+.+....... ...+.|.+++|. |+++.+++.+....|.+|...
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 33444445544454556789999998877543322 346789999995 589999999999999998642
Q ss_pred CCceEEEE--eecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 185 DGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 185 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
+...+..+ ..+.+.+|.+..|.++|.. +.+. ++++.++|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~L------vV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTL------VVGS-GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeE------EEEe-CCEEEEECCC
Confidence 11223332 2334457899999999984 3222 4578888743
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.93 E-value=0.12 Score=39.84 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=108.7
Q ss_pred eeEEEEeeCCCEEEEeecCC--eEEEEeCCCcceecccccCCc-cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE
Q 022184 115 QKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF 191 (301)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 191 (301)
...+.|..++.++-+.+.-| .|+.+|+.+++......-... --..++.. +++...-.=.++...+||..+-+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 46788878887777776554 799999999887544332221 12334444 234444455788999999999998888
Q ss_pred EeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC-----CCcEEEEEcCCCCEEEEeeCCC
Q 022184 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG 266 (301)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~d~ 266 (301)
+.-..+ -..++ .+++. ++.+.....|..+|..+.+....+.... ..++.+.|- +|...|=.=...
T Consensus 126 ~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 FPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred EecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 875543 35555 56666 5666667799999998877665554332 245667775 566555555667
Q ss_pred cEEEEeCCCceeecccc-----c---c-c----cCccEEEEEEccCC
Q 022184 267 DICVVDVKKMEINHWSK-----R---L-H----LGTSIALVEFCPTQ 300 (301)
Q Consensus 267 ~i~i~~~~~~~~~~~~~-----~---~-~----~~~~v~~~~~spdg 300 (301)
.|...|..+|+....+. . . . ...-.+.+||.|++
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~ 242 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET 242 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC
Confidence 88889999988765431 0 0 0 02458899998875
No 405
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.88 E-value=0.15 Score=40.02 Aligned_cols=231 Identities=14% Similarity=0.106 Sum_probs=121.3
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCC-----ccccccccccCCCCCCCCCeeEEEEeeCCC------------EE
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF 127 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~------------~l 127 (301)
....|+++|.+.+-++....+...+||.... ....................+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 3678999998877777777788999998722 111111110001111234567788875333 35
Q ss_pred EEeecCCeEEEEeCCCcce-----ecccccC-Ccc-EEEEEecC--CCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCC
Q 022184 128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HKS-VLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSD 197 (301)
Q Consensus 128 ~~~~~dg~i~v~d~~~~~~-----~~~~~~~-~~~-i~~~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~ 197 (301)
+.+++||+|.-|...-... ...+... ... -..+++.. .+.+|..+. ..++|.+||-.-.+.. +.....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCcc
Confidence 7788999999998532221 1111111 122 33455543 345555444 6789999985432211 110000
Q ss_pred CCeeEEEEcc-----CCCcceEEE---------EEEeCCcceEEEEEccCceEeeeeecc--CCCcEEEEEcC------C
Q 022184 198 EKIELCRFSK-----DGTKPFLFC---------TVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISL------D 255 (301)
Q Consensus 198 ~~v~~~~~~~-----~~~~~~~~~---------~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~s~------~ 255 (301)
.+-.-..|.| -+..+|+.. -+.+..-|.|.+||+. ++.++++... -...+.++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0000001111 011111111 1334445789999986 4555544321 24557777766 3
Q ss_pred CCEEEEeeCCCcEEEEeCCCceeeccccccc----cCccEEEEEEcc
Q 022184 256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCP 298 (301)
Q Consensus 256 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~v~~~~~sp 298 (301)
+.+|+---.||+|..||..+++.+-.+.... .....+.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5566665679999999999887665553222 012356666654
No 406
>PRK10115 protease 2; Provisional
Probab=96.87 E-value=0.33 Score=43.86 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=101.0
Q ss_pred CcceEEEECCCCCeEEEEecC-----CcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC-----
Q 022184 64 GDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----- 133 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 133 (301)
-.+..+.|+|+|++|+.+... -.|++.|+.++.... ..+.... ..++|++|++.|+....+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------ELLDNVE--PSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------ccccCcc--eEEEEeeCCCEEEEEEecCCCCC
Confidence 347778999999988866432 357788887664211 1111111 459999999877766442
Q ss_pred -CeEEEEeCCCc--ceecccccCCccEE-EEEecCCCcEEEEEe---CCCcEEEEeCC--CCceEEEEeecCCCCeeEEE
Q 022184 134 -GHLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCR 204 (301)
Q Consensus 134 -g~i~v~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~---~d~~i~i~d~~--~~~~~~~~~~~~~~~v~~~~ 204 (301)
..|+.+++.++ +....+........ .+..+.++++++..+ .++.+.+++.. .+.....+..... ....+.
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD-HEYSLD 276 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC-CEEEEE
Confidence 36777888777 32222322222333 233344777665444 34578888853 3443333332222 222222
Q ss_pred EccCCCcceEEEEEEe--CCcceEEEEEccCceEeeeeecc-C-CCcEEEEEcCCCCEEEEeeCCCc--EEEEeCCCc
Q 022184 205 FSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL-R-KPASVLSISLDGKYLAMGSKDGD--ICVVDVKKM 276 (301)
Q Consensus 205 ~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~-~-~~v~~~~~s~~~~~l~~~~~d~~--i~i~~~~~~ 276 (301)
..+..++ +.+. .....|...++........+..+ . ..+..+.+.. +.++++...++. +.+++..++
T Consensus 277 --~~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~ 348 (686)
T PRK10115 277 --HYQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR 348 (686)
T ss_pred --eCCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC
Confidence 2233322 2222 33445555555521111223333 2 3677777773 345555555665 455555433
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.0087 Score=44.38 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=66.9
Q ss_pred CCCEEEEeecCCeEEEEeCCCcceecc-cccCCccEEEE-EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCe
Q 022184 123 DGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDM-DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI 200 (301)
Q Consensus 123 ~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v 200 (301)
-+..++.|+.+|.|++|.+........ .......|.++ .-..++.+..+++.|+.|+.|++.-.+.+...-.+...+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 356789999999999999863222221 11222233332 2233556888899999999999988877666654443445
Q ss_pred eEEEEccCCCcceEEEEEEe--CCcceEEEEEccC
Q 022184 201 ELCRFSKDGTKPFLFCTVQR--GDKALLAVYDIST 233 (301)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~ 233 (301)
.....+..++. +... +.+..++.|++..
T Consensus 149 e~~ivv~sd~~-----i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 149 EELIVVGSDEF-----LKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeEEecCCce-----EEeeccccchhhhhcchhh
Confidence 55555555554 3333 6677788888764
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.76 E-value=0.24 Score=43.53 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=82.3
Q ss_pred cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEcC
Q 022184 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYG 94 (301)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~~ 94 (301)
.+.++||.+. +....-.+|.||+....+...+. .....+.-.+ ..+ +|...|+|+.|| ++..||..+
T Consensus 334 ~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~--M~~~R~~~~v--~~l--~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 334 KLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAP--MNTKRSDFGV--AVL--DGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred EEEEEccccC--CCcccceEEEecCCCCceeccCC--ccCcccccee--EEE--CCEEEEEeccccccccccEEEecCCC
Confidence 4666777552 23344578888888887754221 1112122222 222 688888898886 466677665
Q ss_pred CccccccccccCCCCCCCCCeeEEEE-eeCCCEEEEeecCC------eEEEEeCCCcceec--ccccCCccEEEEEecCC
Q 022184 95 GATDINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDG------HLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD 165 (301)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg------~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~ 165 (301)
.+-.. ...+.. ....... .-+|.+.++|+.++ ++..||..+.+... .+........ ++.- +
T Consensus 406 ~~W~~------va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~ 475 (571)
T KOG4441|consen 406 NKWTP------VAPMLT--RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-N 475 (571)
T ss_pred Ccccc------cCCCCc--ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE-C
Confidence 54311 111111 2222222 23777778887553 56788877655422 2211111221 2222 5
Q ss_pred CcEEEEEeCCCc-----EEEEeCCCCceEEE
Q 022184 166 SEFLATTSTDGS-----ARIWKTEDGVAWTF 191 (301)
Q Consensus 166 ~~~l~~~~~d~~-----i~i~d~~~~~~~~~ 191 (301)
+.+.+.|+.|+. |..||.++.+....
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 778888887763 77788877665443
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.71 E-value=0.14 Score=42.40 Aligned_cols=144 Identities=9% Similarity=0.007 Sum_probs=77.2
Q ss_pred CCeeEEEEeeCCCEEEEee-----------cCC-eEEEEeCCC--cce--ecccccCCccEEEEEecCCCcEEEEEeCCC
Q 022184 113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPS--LRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 176 (301)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ .++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3457789999998776642 123 677775432 221 12222223356889999988 444 34433
Q ss_pred cEEEEeCCCC-----ceEEE---Eeec---CCCCeeEEEEccCCCcceEEEEEEeC------------------CcceEE
Q 022184 177 SARIWKTEDG-----VAWTF---LTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA 227 (301)
Q Consensus 177 ~i~i~d~~~~-----~~~~~---~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~ 227 (301)
..++.|.... +.... +... .......++|.|||.. |+ ..+. ..+.|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence 3334354321 21111 2111 1223678999999974 22 1111 114566
Q ss_pred EEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 228 ~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
-+|..+++.. .+...-.....++|+|+|+++++-.
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 6666655432 2222223457899999998877654
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.70 E-value=0.17 Score=41.90 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=74.0
Q ss_pred CcceEEEECCCCCeEEEEe-----------cCC-cEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEee
Q 022184 64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 131 (301)
.....|+|.++|+.+++-. ..+ .|.+++-.++......... ..........+++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~v---fa~~l~~p~Gi~~~~~G-lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNV---FAEELSMVTGLAVAVGG-VYV-AT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEE---eecCCCCccceeEecCC-EEE-eC
Confidence 3467899999998776642 122 6766654433221110000 00112345788998888 444 44
Q ss_pred cCCeEEEEeCCCc-----c--eecc-ccc----CCccEEEEEecCCCcEEEEEeCC-------------------CcEEE
Q 022184 132 VDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GSARI 180 (301)
Q Consensus 132 ~dg~i~v~d~~~~-----~--~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~i 180 (301)
.....++.|.... + .+.. +.. ++.....++|.|||.+.++.+.. +.|.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4443334344211 1 1111 211 12347789999999876654421 33555
Q ss_pred EeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
++...++ ...+..... ....++|+|+|+.
T Consensus 169 ~~pdg~~-~e~~a~G~r-np~Gl~~d~~G~l 197 (367)
T TIGR02604 169 YNPDGGK-LRVVAHGFQ-NPYGHSVDSWGDV 197 (367)
T ss_pred EecCCCe-EEEEecCcC-CCccceECCCCCE
Confidence 5554443 233333322 3678999999875
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.69 E-value=0.23 Score=39.61 Aligned_cols=262 Identities=15% Similarity=0.149 Sum_probs=112.8
Q ss_pred CCceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccc-cCCcceEEEECCCCCeEEEE
Q 022184 3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCS 81 (301)
Q Consensus 3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~ 81 (301)
...+++.++|..+ ..-.++|... .|+.-...+..+...... ... -.-...++.|..+ +.++ +
T Consensus 15 t~~~l~dV~F~d~---~~G~~VG~~g---------~il~T~DGG~tW~~~~~~---~~~~~~~~l~~I~f~~~-~g~i-v 77 (302)
T PF14870_consen 15 TDKPLLDVAFVDP---NHGWAVGAYG---------TILKTTDGGKTWQPVSLD---LDNPFDYHLNSISFDGN-EGWI-V 77 (302)
T ss_dssp -SS-EEEEEESSS---S-EEEEETTT---------EEEEESSTTSS-EE--------S-----EEEEEEEETT-EEEE-E
T ss_pred CCCceEEEEEecC---CEEEEEecCC---------EEEEECCCCccccccccC---CCccceeeEEEEEecCC-ceEE-E
Confidence 4568889999833 3344454421 344444444333221110 110 0223567777543 3344 4
Q ss_pred ecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee-cccccCCccEEEE
Q 022184 82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDM 160 (301)
Q Consensus 82 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~i~~~ 160 (301)
+..+ +.+...+.++. ..... .. ..-.+....+....++..++ ++..|.|+.= .+.++.- .......+.+..+
T Consensus 78 G~~g-~ll~T~DgG~t-W~~v~--l~-~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~ 150 (302)
T PF14870_consen 78 GEPG-LLLHTTDGGKT-WERVP--LS-SKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDI 150 (302)
T ss_dssp EETT-EEEEESSTTSS--EE-------TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEE
T ss_pred cCCc-eEEEecCCCCC-cEEee--cC-CCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeE
Confidence 4555 43444343433 22111 00 01122334444444443334 3445554432 1233321 1223334678888
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEE-ccCceEeee
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD-ISTWNKIGH 239 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~~~~~~~~ 239 (301)
.-++||++++++.......-||.-... -.........++..+.|.|++.. ......+.|+.=+ ....+.-..
T Consensus 151 ~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~l------w~~~~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 151 TRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNL------WMLARGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp EE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-E------EEEETTTEEEEEE-TTEEEEE--
T ss_pred EECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCE------EEEeCCcEEEEccCCCCcccccc
Confidence 899999999988776667788753321 22233334567999999999874 3344677888776 222222111
Q ss_pred ----eeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce---eeccccccccCccEEEEEEccC
Q 022184 240 ----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---INHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 240 ----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~spd 299 (301)
.....-.+..++|.+++...++|+. |.+ +...+.|+ ...... ......+.+.|.++
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~--~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE--NVPSNLYRIVFVNP 286 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT--TSSS---EEEEEET
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECcccc--CCCCceEEEEEcCC
Confidence 1122234788999998887777664 433 33444443 222221 11445777777554
No 412
>PHA03098 kelch-like protein; Provisional
Probab=96.69 E-value=0.37 Score=42.25 Aligned_cols=148 Identities=11% Similarity=0.047 Sum_probs=72.4
Q ss_pred eCCCEEEEeecC-----CeEEEEeCCCcceec--ccccCCccEEEEEecCCCcEEEEEeCC------CcEEEEeCCCCce
Q 022184 122 VDGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA 188 (301)
Q Consensus 122 ~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~ 188 (301)
-+++.++.|+.+ ..+..||..+.+... .+....... +++ .-+++.++.|+.+ ..+..||+.+.+-
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 367777888765 357778876654321 111111111 122 2256777777632 3578899876554
Q ss_pred EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCc--------ceEEEEEccCceE--eeeeeccCCCcEEEEEcCCCCE
Q 022184 189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--------ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKY 258 (301)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~s~~~~~ 258 (301)
...-..+....-.++ ...++. ++ +.|+.+ ..+.+||..+.+- +............+.+ +++.
T Consensus 419 ~~~~~~p~~r~~~~~-~~~~~~-iy----v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i 490 (534)
T PHA03098 419 SKGSPLPISHYGGCA-IYHDGK-IY----VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKI 490 (534)
T ss_pred eecCCCCccccCceE-EEECCE-EE----EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEE
Confidence 322111111101111 222333 22 333321 2488899876542 2222211222222223 6777
Q ss_pred EEEeeCC-----CcEEEEeCCCceee
Q 022184 259 LAMGSKD-----GDICVVDVKKMEIN 279 (301)
Q Consensus 259 l~~~~~d-----~~i~i~~~~~~~~~ 279 (301)
++.|+.+ +.+.+||..+.+..
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCCCEEE
Confidence 7777654 46899998877644
No 413
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.66 E-value=0.048 Score=45.31 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=61.2
Q ss_pred cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC-------------cceEEEEEEeCC
Q 022184 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRGD 222 (301)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~ 222 (301)
.+.+++.+|++++.|+...=|+|.++|+.++..++.+++-.+..+.-+.....+. ...++.++-...
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5788999999998888877899999999999888877765444333222221111 112333566778
Q ss_pred cceEEEEEccCceEeeeeec
Q 022184 223 KALLAVYDISTWNKIGHKRL 242 (301)
Q Consensus 223 ~~~i~~~d~~~~~~~~~~~~ 242 (301)
.|.|.+|.++++..+..+..
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CCeEEEEecCCCCEEEEEEe
Confidence 89999999999887765543
No 414
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=96.61 E-value=0.57 Score=43.02 Aligned_cols=175 Identities=13% Similarity=0.195 Sum_probs=97.2
Q ss_pred CCCceeEEEeee---ecCC-CccEEEecCCccccCCcCceeEee------eCC---CcceeeeCCceecccc-ccCCcce
Q 022184 2 EGGGTVTCGSWI---KRPE-NVNLVVLGKSSRASSSPSVLEIFS------FDP---KTTSVYTSPLVTYVFD-ESEGDPM 67 (301)
Q Consensus 2 ~~~~~v~~~~w~---~~~~-~~~~~~~g~~~~~~~~~~~~~i~~------~~~---~~~~~~~~~~~~~~~~-~h~~~v~ 67 (301)
+.+.||..++|. ...+ ...++++= ....+.|+. ... ....+...+....... --..+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-------t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-------TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-------cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 567889888888 2211 12455551 334445555 111 1122222333222211 1133677
Q ss_pred EEEECC-CCCeEEEEecCCcEEEEEEcCCccc----cccccccCCCC----CCCCCeeEEEEeeCCCEEEEeecCCeEEE
Q 022184 68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATD----INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRI 138 (301)
Q Consensus 68 ~~~~~~-~~~~l~~~~~d~~i~~w~~~~~~~~----~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 138 (301)
.++|+| +.+.||.....|...||++...... ..........+ .....-..+.|.++.+.|++++ ...+.+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~ 228 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLML 228 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEE
Confidence 899999 5568999999999999999322111 11110011111 1123445788988888888877 456889
Q ss_pred EeCCCcceec--ccccCCccEEEEEecCCCc-EEEEEeCCCcEEEEeCCC
Q 022184 139 MHWPSLRIIL--DEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTED 185 (301)
Q Consensus 139 ~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 185 (301)
+|+++..... ........|.++.-+|... +++.. ....|...++..
T Consensus 229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 229 IDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred EECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 9998765522 1222335788888888622 22222 236777778766
No 415
>PHA02713 hypothetical protein; Provisional
Probab=96.58 E-value=0.16 Score=44.59 Aligned_cols=177 Identities=9% Similarity=0.031 Sum_probs=81.8
Q ss_pred eEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecCC-----cEEEEEEcCCccccccccccCCCCCCC
Q 022184 38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDA 112 (301)
Q Consensus 38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~~w~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
.++.|++....+...+. +.........+.+ +|+..+.|+.++ .+..||..+..-.. ...+...
T Consensus 321 ~v~~Yd~~~n~W~~~~~----m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~------~~~mp~~ 388 (557)
T PHA02713 321 KVYKINIENKIHVELPP----MIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKM------LPDMPIA 388 (557)
T ss_pred eEEEEECCCCeEeeCCC----CcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEE------CCCCCcc
Confidence 56777777766543221 1111111222222 577777777653 47788877654211 1111111
Q ss_pred CCeeEEEEeeCCCEEEEeecCC-----------------------eEEEEeCCCccee--cccccCCccEEEEEecCCCc
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDG-----------------------HLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSE 167 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg-----------------------~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~ 167 (301)
..-.+++ .-+++..+.|+.++ .+..||..+.+-. ..+....... +++ .-+++
T Consensus 389 r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~ 465 (557)
T PHA02713 389 LSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDD 465 (557)
T ss_pred cccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCE
Confidence 1111111 23677777777542 4777887665432 2121111111 122 22577
Q ss_pred EEEEEeCCC------cEEEEeCCC-CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc--eEEEEEccCce
Q 022184 168 FLATTSTDG------SARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWN 235 (301)
Q Consensus 168 ~l~~~~~d~------~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~ 235 (301)
..+.|+.++ .+..||..+ .+-...-..+.......++.. +++. .+.|+.++ .+..||..+.+
T Consensus 466 IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~~~i-----yv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 466 IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-DNTI-----MMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-CCEE-----EEEeeecceeehhhcCccccc
Confidence 777776542 367888876 443221111111111111111 3332 35566565 56677766544
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.55 E-value=0.1 Score=45.65 Aligned_cols=112 Identities=13% Similarity=0.193 Sum_probs=72.7
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee--CCCEEEEeecCCeEEEEeC
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHW 141 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~v~d~ 141 (301)
..+.-+.-+.-++..++-+....+.|||...+... ....+...+.|.++.|.. +++.+++.+..+.|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE------~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE------YEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE------EeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 34555555555554444444568999999877631 123334568899999965 8899999999999998853
Q ss_pred C---------Ccceecc--cccCC-ccEEEEEecCCCcEEEEEeCCCcEEEEeC
Q 022184 142 P---------SLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT 183 (301)
Q Consensus 142 ~---------~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 183 (301)
. +...+.+ +..+. .+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 1111222 22223 478899999999766554 367888874
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.55 E-value=0.26 Score=38.44 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=82.4
Q ss_pred cceEEEECCCCCeEEEEe-cCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEe-CC
Q 022184 65 DPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WP 142 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d-~~ 142 (301)
.+.+.+++++++.++... .++.-.||-...+....... ....+....|++++...+....+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--------~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--------TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--------cCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 688999999999887665 23334444444333211111 123567789999988777766666666663 23
Q ss_pred Cccee-ccc--ccCCccEEEEEecCCCcEEEEEe---CCCcEEEEeCC---CC--ceE---EEEeecCCCCeeEEEEccC
Q 022184 143 SLRII-LDE--PKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTE---DG--VAW---TFLTRNSDEKIELCRFSKD 208 (301)
Q Consensus 143 ~~~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~---~~--~~~---~~~~~~~~~~v~~~~~~~~ 208 (301)
+++.. ... ......|..+.++|||..++... .++.|.+--+. .+ ..+ ..+.......+..++|.++
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 33221 111 11112899999999999887765 34666666543 22 111 1111122346889999999
Q ss_pred CCc
Q 022184 209 GTK 211 (301)
Q Consensus 209 ~~~ 211 (301)
+..
T Consensus 177 ~~L 179 (253)
T PF10647_consen 177 STL 179 (253)
T ss_pred CEE
Confidence 985
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.048 Score=49.90 Aligned_cols=143 Identities=9% Similarity=-0.101 Sum_probs=88.6
Q ss_pred CCeeEEEEeeCCCEEEEee--cCCeEEEEeCCCcceecc-----cc------cCCccEEEEEecCCCc-EEEEEeCCCcE
Q 022184 113 GPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILD-----EP------KAHKSVLDMDFSLDSE-FLATTSTDGSA 178 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~--~dg~i~v~d~~~~~~~~~-----~~------~~~~~i~~~~~~~~~~-~l~~~~~d~~i 178 (301)
-++..+...+|+...++.. .+-.|..||+++...... +. .......++.|+|.-. ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3556667777876655443 344789999875432110 11 1112456788988543 46667789999
Q ss_pred EEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeee---cc-CCCcEEEEEcC
Q 022184 179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LL-RKPASVLSISL 254 (301)
Q Consensus 179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~---~~-~~~v~~~~~s~ 254 (301)
++..+........- .......++++|+|.|+. ++.+...|++.-|...-. ....+. .. ...|.+++|-.
T Consensus 181 ~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQ-----l~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQ-----LFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcc-cCcccceeeEEeccccce-----eeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence 98887643322211 123345899999999998 788889999998876432 111121 11 35788999976
Q ss_pred CCCEEEEe
Q 022184 255 DGKYLAMG 262 (301)
Q Consensus 255 ~~~~l~~~ 262 (301)
...++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 66665543
No 419
>PHA03098 kelch-like protein; Provisional
Probab=96.44 E-value=0.5 Score=41.44 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=72.9
Q ss_pred cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC-----CcEEEEEEcC
Q 022184 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYG 94 (301)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----~~i~~w~~~~ 94 (301)
.++++||..... ...-.+|.|++....+...+... ........+.+ +++.++.|+.+ ..+..||..+
T Consensus 296 ~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~~~----~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 296 VIYFIGGMNKNN--LSVNSVVSYDTKTKSWNKVPELI----YPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEEECCCcCCC--CeeccEEEEeCCCCeeeECCCCC----cccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence 455666543211 11125777888777664433211 11111222222 56677777765 3466777765
Q ss_pred CccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecC------CeEEEEeCCCcceec--ccccCCccEEEEEecCCC
Q 022184 95 GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDS 166 (301)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~ 166 (301)
..-. . ...+.....-.++ ..-+++..+.|+.+ ..+..||..+.+-.. .+....... ++ ...++
T Consensus 368 ~~W~--~----~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~ 438 (534)
T PHA03098 368 SKWR--E----EPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDG 438 (534)
T ss_pred Ccee--e----CCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECC
Confidence 4321 1 1111111111122 22366777777632 457888987654321 111111111 12 22356
Q ss_pred cEEEEEeCCC--------cEEEEeCCCCceE
Q 022184 167 EFLATTSTDG--------SARIWKTEDGVAW 189 (301)
Q Consensus 167 ~~l~~~~~d~--------~i~i~d~~~~~~~ 189 (301)
..++.|+.+. .+.+||..+.+-.
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 6677776432 3788898776543
No 420
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.41 E-value=0.41 Score=39.06 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=39.2
Q ss_pred CeeEEEEccCCCcc--eEEEEEEeCCcceEEEEEccCceEee---e-eeccCCCcEEEEEcCCCCEEEEeeCCCcEE
Q 022184 199 KIELCRFSKDGTKP--FLFCTVQRGDKALLAVYDISTWNKIG---H-KRLLRKPASVLSISLDGKYLAMGSKDGDIC 269 (301)
Q Consensus 199 ~v~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 269 (301)
.+..+.|.+...+. .--.+++.-..+.|...++.....+. . +......+..+++.|||.+.++...+|.|+
T Consensus 254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 35566665443321 00013444446678877776443321 1 122334789999999999888888888774
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.48 Score=41.83 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=96.0
Q ss_pred CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecc-c--ccCCccEEEE
Q 022184 84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-E--PKAHKSVLDM 160 (301)
Q Consensus 84 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~--~~~~~~i~~~ 160 (301)
--.|+||+..+.......+ .++.+-.+.|+.+.. |+....+|++++|++-....... . ......|..+
T Consensus 63 ~~~I~If~~sG~lL~~~~w--------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILW--------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred ceeEEEEeccccchHHHHh--------cCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEE
Confidence 3458888886554321111 124778899987665 56667899999999853222110 1 1222345555
Q ss_pred EecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC--CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce-Ee
Q 022184 161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI 237 (301)
Q Consensus 161 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~ 237 (301)
.+..+|-.+++ .+|++.+-.-.....+..++.-... +..+-...+++..... ++.....--..++-..... ..
T Consensus 134 ~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 134 RFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQL 209 (829)
T ss_pred EEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceecccccc
Confidence 55555643333 4455544432222122222211111 1122222222221111 1110000000111111111 11
Q ss_pred eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEc
Q 022184 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC 297 (301)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~s 297 (301)
..+......+..+..||+.++|+--...|.|.+-+.+..+..-.+.... ..+...++|.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wc 268 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWC 268 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceee
Confidence 1222223567889999999999999999999999887766554442111 2333355554
No 422
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.23 E-value=0.58 Score=39.08 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=81.5
Q ss_pred eeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCc-----
Q 022184 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV----- 187 (301)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----- 187 (301)
...+..++++.+++.+.....++-|| .+.. ..........++.+.+.+++..++++ .+|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34456667877777666433333344 2221 11112234578999999998877665 445543 3333443
Q ss_pred eEEEEeec-CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeee---eeccCCCcEEEEEcCCCCEEEEee
Q 022184 188 AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 188 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
........ ....+..+.|.+++. ++..+..|.+.... ..++.-.. ........+.+.|.++++.+++|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G- 388 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG- 388 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence 22222221 223488899998887 46667777666654 33332211 12234568899998877766666
Q ss_pred CCCcEEEE
Q 022184 264 KDGDICVV 271 (301)
Q Consensus 264 ~d~~i~i~ 271 (301)
.+|.|.-|
T Consensus 389 ~~G~il~~ 396 (398)
T PLN00033 389 NDGVLLRY 396 (398)
T ss_pred CCcEEEEe
Confidence 56766544
No 423
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.12 E-value=0.18 Score=44.66 Aligned_cols=118 Identities=12% Similarity=0.096 Sum_probs=74.5
Q ss_pred ceEEEECC--CCCeEEEEecCCcEEEEEEcCCcc------------ccccccccCCCCCCCCCeeEEEEe--eCCCEEEE
Q 022184 66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGAT------------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA 129 (301)
Q Consensus 66 v~~~~~~~--~~~~l~~~~~d~~i~~w~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~ 129 (301)
|+.|.... +.+.|+.+..||.|.+|.++.-.. ..+......-.+.....+.+++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 55555543 445788889999999998742110 000000111122234678899998 77888999
Q ss_pred eecCCeEEEEeCCCcce-ecc--cccCCccEEEEEecCCC---c---EEEEEeCCCcEEEEeC
Q 022184 130 GGVDGHLRIMHWPSLRI-ILD--EPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT 183 (301)
Q Consensus 130 ~~~dg~i~v~d~~~~~~-~~~--~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~i~d~ 183 (301)
++....|.||-+..... ... ...+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888886643211 111 11234578899997743 2 7888899999998887
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.07 E-value=0.84 Score=41.26 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=54.6
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc--------ccccc------cccCCCCCCCCCeeEEEEeeC---CCE
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINLL------AKKMPPLQDAGPQKCLSFSVD---GSR 126 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~--------~~~~~------~~~~~~~~~~~~v~~~~~s~~---~~~ 126 (301)
-.|..+.++|+|++|+..+..| |.|..+...-. ..... ...+........|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4689999999999999988877 66766643210 00000 111111223457899999995 578
Q ss_pred EEEeecCCeEEEEeCCCc
Q 022184 127 FAAGGVDGHLRIMHWPSL 144 (301)
Q Consensus 127 l~~~~~dg~i~v~d~~~~ 144 (301)
|++=..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999643
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.00 E-value=0.03 Score=29.63 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=25.4
Q ss_pred CCeeEEEEeeCC---CEEEEeecCCeEEEEeCCC
Q 022184 113 GPQKCLSFSVDG---SRFAAGGVDGHLRIMHWPS 143 (301)
Q Consensus 113 ~~v~~~~~s~~~---~~l~~~~~dg~i~v~d~~~ 143 (301)
+.+++++|||+. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4788877789999999985
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.80 E-value=0.21 Score=40.73 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=56.5
Q ss_pred cceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeC---CCEEEEeec-C-------
Q 022184 65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D------- 133 (301)
Q Consensus 65 ~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d------- 133 (301)
...+|+|.|+|+.+++ ...|.|++++ ..+...........-..........++++|+ ..+|..... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999877665 5699999999 3333311111111112234567899999994 234433332 1
Q ss_pred -CeEEEEeCCCc-------ceec-cccc---CCccEEEEEecCCCcEEEEEeCC
Q 022184 134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTD 175 (301)
Q Consensus 134 -g~i~v~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~d 175 (301)
..|.-|.+... +.+. .... ....-..|+|.|||.++++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23443433322 1111 1111 12245669999999877766543
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.79 E-value=0.05 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCC---CEEEEeeCCCcEEEEeCCC
Q 022184 245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 245 ~~v~~~~~s~~~---~~l~~~~~d~~i~i~~~~~ 275 (301)
+.++++.|||+. .+|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999854 5888888889999999985
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.64 E-value=0.42 Score=32.65 Aligned_cols=118 Identities=10% Similarity=0.003 Sum_probs=71.1
Q ss_pred EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-----CCCEEEEeecCCeEEEEeCC
Q 022184 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~v~d~~ 142 (301)
.-.|......|++++..++|.|++.................+.-...|++++-.+ +...|+.|+ ...+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 4456666778888889999999998655432221222233444456777775544 345567666 5679999998
Q ss_pred CcceecccccCCccEEEEEecC---CCcEEEEEeCCCcEEEEeCCCCc
Q 022184 143 SLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGV 187 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~ 187 (301)
....+... .-.+.+.++.+-. ...-++..+.+-.|.-||....+
T Consensus 82 ~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 77665433 3346677776632 22334444445666666654433
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.63 E-value=0.75 Score=41.56 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCC----------cce--ec-cc--------ccCCccEEEEEecCC---CcE
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--IL-DE--------PKAHKSVLDMDFSLD---SEF 168 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~----------~~~--~~-~~--------~~~~~~i~~~~~~~~---~~~ 168 (301)
-.|..+.++|+|++++..+..| |.|..+.. ++. .. .. ......|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688899999999999888765 44544431 111 00 00 122247899999995 578
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 022184 169 LATTSTDGSARIWKTEDG 186 (301)
Q Consensus 169 l~~~~~d~~i~i~d~~~~ 186 (301)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=95.50 E-value=1.1 Score=36.59 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCCeeEEEEeeCCCEEEEeecCCeEEEE-eCCCcceeccc-ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceE
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIM-HWPSLRIILDE-PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~-d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 189 (301)
...+..+.+.|++.+++++. .|.+..- + ..++.-... ......++++.+.++++.++.+ ..|.+++=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 35688899999887665554 5655432 2 122211111 2233578999999998876665 4566643234444433
Q ss_pred EEEeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeee---eccCCCcEEEEEcCCCCEEEEee
Q 022184 190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
.....+ ....+..+.+.+++.. ...+.+|.+.. ....++.-... .........+.|..+++.+++|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~------~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 320 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEI------WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG- 320 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCE------EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-
Confidence 322211 1234778889988763 45556665543 33333322111 1222357778877776666655
Q ss_pred CCCcEEEEeC
Q 022184 264 KDGDICVVDV 273 (301)
Q Consensus 264 ~d~~i~i~~~ 273 (301)
..|.|.-|+-
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 5677776653
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.35 E-value=0.52 Score=39.82 Aligned_cols=197 Identities=13% Similarity=0.075 Sum_probs=95.0
Q ss_pred ccEEEecCCccc--cCCcCceeEeeeCCCc-ceeeeCCceeccccccCCcceEEEECC-CCCeEEE-EecCCcEEEEEEc
Q 022184 19 VNLVVLGKSSRA--SSSPSVLEIFSFDPKT-TSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVC-STTNGGCKLFEVY 93 (301)
Q Consensus 19 ~~~~~~g~~~~~--~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~-~~~d~~i~~w~~~ 93 (301)
...+++|-.+.. ...+|.|-++.-...+ -.+...........|..-.+..+-.+. +...|.. +.....++-.|++
T Consensus 419 Ns~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIE 498 (776)
T COG5167 419 NSHLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIE 498 (776)
T ss_pred CceEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecc
Confidence 456666633222 2345566666554443 111111111112223332344444443 4444443 3334556666776
Q ss_pred CCccccccccccCCCCCCCCCeeEEEEeeCCC-------EEEEeecCCeEEEEeCCC-cceecccccCCccEEEEEec--
Q 022184 94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFS-- 163 (301)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~i~~~~~~-- 163 (301)
.++....- .....+ -+.|.|+.+ .-++|-.+..|.-.|.+- |..+. ........+.-.|+
T Consensus 499 rGkvveeW--------~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~-v~esKdY~tKn~Fss~ 568 (776)
T COG5167 499 RGKVVEEW--------DLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK-VVESKDYKTKNKFSSG 568 (776)
T ss_pred cceeeeEe--------ecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee-eeeehhcccccccccc
Confidence 66542111 111222 456666432 223454566666556543 32221 11112222222232
Q ss_pred --CCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 164 --LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 164 --~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
....++|.++..|-|++||--.-.....+. ..+..|..+..+.+|+++ ++.+ ...+.+-|++
T Consensus 569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~i-----laTC-k~yllL~d~~ 632 (776)
T COG5167 569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHI-----LATC-KNYLLLTDVP 632 (776)
T ss_pred ccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEE-----EEee-cceEEEEecc
Confidence 245589999999999999954333222333 334568899999999972 3222 4467777754
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.32 E-value=0.4 Score=36.39 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=50.0
Q ss_pred EeeCCCEEEEeecCCeEEEEeCCCcceeccc------c--------cCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 120 ~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 185 (301)
+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4557889999999999999999887754322 1 2335788888888888777665 47788888765
Q ss_pred Cce
Q 022184 186 GVA 188 (301)
Q Consensus 186 ~~~ 188 (301)
+.-
T Consensus 97 ~~W 99 (219)
T PF07569_consen 97 GCW 99 (219)
T ss_pred cee
Confidence 443
No 433
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.25 E-value=1.2 Score=35.29 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=63.2
Q ss_pred CeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEe------CCCcEEEEeCCCCceEEEEee----cCCCCeeEE
Q 022184 134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTR----NSDEKIELC 203 (301)
Q Consensus 134 g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~ 203 (301)
..|++||..+.+-..--..-.+.|+++.|..+.+.++.|. ....+..||..+... ..+.. .-++++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 3589999877665433334457899999997777777664 345688999877653 22322 123567777
Q ss_pred EEccC-CCcceEEEEEEeCCcceEEEEEccCceEeee
Q 022184 204 RFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGH 239 (301)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 239 (301)
.+..+ +..+++. ......+..|..||-.++..+..
T Consensus 95 ~~~~~d~~~~~~a-G~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVA-GRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEe-ceecCCCceEEEEcCCceEeccc
Confidence 77543 3332211 12234455688888776665543
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=95.17 E-value=1.9 Score=37.31 Aligned_cols=144 Identities=11% Similarity=0.056 Sum_probs=70.5
Q ss_pred eCCCEEEEeecC--CeEEEEeCCCccee--cccccCCccEEEEEecCCCcEEEEEeCCC---cEEEEeCCCCceEEEEee
Q 022184 122 VDGSRFAAGGVD--GHLRIMHWPSLRII--LDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTR 194 (301)
Q Consensus 122 ~~~~~l~~~~~d--g~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~ 194 (301)
-++...++|+.+ ..+..||..+++.. ..+.........+ .-+|+..+.|+.++ .+..||.++.+-...-..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 467777888754 35777886554322 1221111111122 22577778777553 467888876544322111
Q ss_pred cCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce--EeeeeeccCCCcEEEEEcCCCCEEEEeeCC-----Cc
Q 022184 195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GD 267 (301)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----~~ 267 (301)
.... ....+..-+++. | +.| |.+.+||.++.+ .+..+.........+. -+++..+.|+.+ ..
T Consensus 395 ~~~r-~~~~~~~~~~~I-Y----v~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ 463 (480)
T PHA02790 395 YYPH-YKSCALVFGRRL-F----LVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDT 463 (480)
T ss_pred CCcc-ccceEEEECCEE-E----EEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccce
Confidence 1111 111112223332 2 233 246778876543 2222222222222222 367788888754 35
Q ss_pred EEEEeCCCcee
Q 022184 268 ICVVDVKKMEI 278 (301)
Q Consensus 268 i~i~~~~~~~~ 278 (301)
+..||..+.+.
T Consensus 464 ve~Yd~~~~~W 474 (480)
T PHA02790 464 IEVYNNRTYSW 474 (480)
T ss_pred EEEEECCCCeE
Confidence 77888776654
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.94 E-value=2.7 Score=37.77 Aligned_cols=156 Identities=10% Similarity=0.039 Sum_probs=87.7
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccc------cccc-cCCC--------CCCCCCeeEEEEee--CCCEEEEeecCCeEE
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDIN------LLAK-KMPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR 137 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~------~~~~-~~~~--------~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~ 137 (301)
.++++.| ..+.|.||+++.-..... +... .... ..-...|+.+.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 5566665 467799999875443211 0000 0000 00112355554444 456788999999999
Q ss_pred EEeCCC-------c----ce---e-----cccccCCccEEEEEec--CCCcEEEEEeCCCcEEEEeCCCC--ceEEEEee
Q 022184 138 IMHWPS-------L----RI---I-----LDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR 194 (301)
Q Consensus 138 v~d~~~-------~----~~---~-----~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~ 194 (301)
+|..++ . +. . .-.......+++++++ ...++||+++....|.||-.... +....-..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 996521 1 00 0 0011223478899998 77888998888888888765432 11111111
Q ss_pred cCCCCeeEEEEccCCCcceE-EEEEEeCCcceEEEEEc
Q 022184 195 NSDEKIELCRFSKDGTKPFL-FCTVQRGDKALLAVYDI 231 (301)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~ 231 (301)
.+...|.+++|-++.....- ..+++.+-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 12335889999876521110 12466677788888877
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.93 E-value=1.1 Score=37.94 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 124 (301)
-.....|+|.|+|+.|++--..|.|++++..+.......................|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45688999999998777654469999987654432111110001111135778999999874
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=1.6 Score=36.58 Aligned_cols=137 Identities=12% Similarity=0.182 Sum_probs=80.7
Q ss_pred EEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCccee
Q 022184 68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII 147 (301)
Q Consensus 68 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~ 147 (301)
.+-|...++.|++ ...|.+.=|-+......... .-.....++|.++.||+|.+.||+--.+.+|.+++....+..
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpi----Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPI----SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCc----eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence 3444433444443 34555777777654421110 111224579999999999999999999999999997433322
Q ss_pred cc----cccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 148 LD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 148 ~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
.. -......|....|+.+ .-+|.... .-+-+|.....+....+...+...|....|.++.+.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred hHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence 21 1222346999999866 44555443 345666654433222222223345888888888775
No 438
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.87 E-value=3.2 Score=38.29 Aligned_cols=249 Identities=10% Similarity=0.012 Sum_probs=124.5
Q ss_pred CceeEEEeeeecC--CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEE--ECCCC-CeE
Q 022184 4 GGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPSG-DDF 78 (301)
Q Consensus 4 ~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~-~~l 78 (301)
-+||..+.-.... +.+.++.+.|. ..++.++|.+-.-.-..+ +...+.| -..+..+. +.++- ++|
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa----~kdgSLRiiRngi~I~e~-----A~i~l~G-ikg~w~lk~~v~~~~d~yl 422 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGA----FKDGSLRIIRNGIGIDEL-----ASIDLPG-IKGMWSLKSMVDENYDNYL 422 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCC----CCCCcEEEEeccccccee-----eEeecCC-ccceeEeeccccccCCcEE
Confidence 4688887777655 44556655442 366778887654332222 2234455 34466666 44422 255
Q ss_pred EEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEee-CCCEEEEeecCCeEEEEeCCCcceecccccCCccE
Q 022184 79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV 157 (301)
Q Consensus 79 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i 157 (301)
+.+ .-+.-++..+... ..... ... -......+..|. .++.|+=.. ...|++++-. +. .... .....+
T Consensus 423 vls-f~~eTrvl~i~~e-~ee~~----~~g--f~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~-~~~W-~~p~~~ 490 (1096)
T KOG1897|consen 423 VLS-FISETRVLNISEE-VEETE----DPG--FSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GL-RSEW-RPPGKI 490 (1096)
T ss_pred EEE-eccceEEEEEccc-eEEec----ccc--ccccCceEEEEccCCceEEEEe-cccEEEEcch-hh-hhcc-cCCCce
Confidence 544 3333556666443 11100 010 111222333333 444444433 3458887744 22 2222 223344
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEE-EEEEeCCcceEE-EEEccCce
Q 022184 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-CTVQRGDKALLA-VYDISTWN 235 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~i~-~~d~~~~~ 235 (301)
+....+.+...++.++.++.+...++..+.............+.|+.++|-|...... .++.|-.+..+. +.-.....
T Consensus 491 ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~ 570 (1096)
T KOG1897|consen 491 TIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI 570 (1096)
T ss_pred EEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence 5455555566777777778888888777664333333345569999999875433200 023333322222 22222222
Q ss_pred Eeeee-ecc---CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 236 KIGHK-RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 236 ~~~~~-~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.+... ... ...|--..+-.|..+|.++..||.+.-|.+.
T Consensus 571 ~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 571 LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred eeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence 22111 111 1234444555678899999999988766544
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.87 E-value=0.2 Score=38.05 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=48.5
Q ss_pred ECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCC--------CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL--------QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 71 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
+..++++|++.+.+|.+++||+.+.+.......- .+.+ .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si-~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSI-APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccH-HHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3446888999999999999999987763332110 0111 2446788888888887666655 5778888764
Q ss_pred C
Q 022184 143 S 143 (301)
Q Consensus 143 ~ 143 (301)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.80 E-value=1.8 Score=35.23 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCcceEEEECCCCCeEEEEecCCc------EEEEEEcCCcc-ccccccccCCCCC-CC--------CCeeEEEEeeCCCE
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGAT-DINLLAKKMPPLQ-DA--------GPQKCLSFSVDGSR 126 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~------i~~w~~~~~~~-~~~~~~~~~~~~~-~~--------~~v~~~~~s~~~~~ 126 (301)
-+....+.+.+++..+++.+.++. +..+++..... ...........+. .. ...-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 456788999876666666677777 66666654111 0000000000000 11 13447788678877
Q ss_pred EEEeecC------CeEEEEeCCCcceeccc---------------ccCCccEEEEEecCCCcEEEEEeC-----CC--c-
Q 022184 127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S- 177 (301)
Q Consensus 127 l~~~~~d------g~i~v~d~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~-----d~--~- 177 (301)
+++.-.+ ..|+.++.. |+....+ ........+++++|+|+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7766556 678888865 4443222 112246899999999996665543 22 1
Q ss_pred ------EEE--EeCCC-CceEEEE--eec------CCCCeeEEEEccCCCc
Q 022184 178 ------ARI--WKTED-GVAWTFL--TRN------SDEKIELCRFSKDGTK 211 (301)
Q Consensus 178 ------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~ 211 (301)
+++ ||..+ +.....+ ... ....+..+.+-++++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l 228 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL 228 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence 444 45444 3222222 222 2346889999999985
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=94.62 E-value=2.1 Score=35.05 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=63.9
Q ss_pred CccEEEEEecCCCcEEEEEeCCCcEEE-EeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc
Q 022184 154 HKSVLDMDFSLDSEFLATTSTDGSARI-WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232 (301)
Q Consensus 154 ~~~i~~~~~~~~~~~l~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 232 (301)
...+.++.+.|++.+++++. .|.+.. +| ..++.-..........++.+.+.++++. +..+..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCC
Confidence 35788999999887766654 454432 22 2233333344444556899999999884 334556666432233
Q ss_pred CceEeeeeec----cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 233 TWNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 233 ~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
.+..-..... ....+..+.+.|+++.++++ .+|.+. .....++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~ 290 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK 290 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC
Confidence 3322111111 12357788999988766555 566554 3444433
No 442
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.61 E-value=3.7 Score=37.91 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=98.6
Q ss_pred ccCCcceEEEEC---C----CCCeEEEEecCCcEEEEEEcCCcc-------ccccccccCCCCC----CCCCeeEEEEee
Q 022184 61 ESEGDPMTIAVN---P----SGDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV 122 (301)
Q Consensus 61 ~h~~~v~~~~~~---~----~~~~l~~~~~d~~i~~w~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~s~ 122 (301)
.-..+|..|+|. . ..++|++ -....+.|+...-.+. ...+....+..+. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 446789999998 2 1234444 4556688888332221 1111111111111 335678999999
Q ss_pred -CCCEEEEeecCCeEEEEeCCCcce----ecccc-cC----------CccEEEEEecCCCcEEEEEeCCCcEEEEeCCCC
Q 022184 123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDEP-KA----------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG 186 (301)
Q Consensus 123 -~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~-~~----------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 186 (301)
+.+.||+....|...||++..... ..... .. .+.-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 667899999999999999921111 00000 11 123347889888888887765 67899999987
Q ss_pred ceEE-EEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
.... .........|..+.-+|.... +++ +++. ..|...|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~-~~F-iLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPS-HVF-ILTS---KEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccc-eEE-EEec---CeEEEEEccC
Confidence 6644 333334456888888887443 222 2332 4577777765
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.0053 Score=50.66 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=91.1
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEe
Q 022184 158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI 237 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 237 (301)
-...|.|.+.-++.++.+..+..||-.... ..... .....-.++|..++..+ ++.+...+.+.+||+.+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhHH
Confidence 356788877778888888999999954332 22222 23345677888877763 455567788999999764322
Q ss_pred eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccCC
Q 022184 238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 238 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spdg 300 (301)
..-.+....-.-+.|++....++.+...|.+.|++..+....-.. ..| ...+++++|.+.+
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh-~RRgtq~av~lEd 171 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKH-QRRGTQIAVTLED 171 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-ccc-ccceeEEEecccc
Confidence 111122222223789999999999999999999998876655443 236 7788899988765
No 444
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.35 E-value=0.37 Score=40.03 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=91.8
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCee-EEEEeeCCCEEEEeecCCeEEEE-
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM- 139 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~v~- 139 (301)
....|..+-..|||+.+..-+. ..+.++++.+.....+......+ -.....|. .+..-..|..+++++.||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp-g~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP-GDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC-CchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 3456777888999998877655 66889998776543321111000 00001122 12222356678888999988877
Q ss_pred eCCCcce-----ecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceE
Q 022184 140 HWPSLRI-----ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL 214 (301)
Q Consensus 140 d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (301)
|.+.+.. ++.+.-...++.-+.-..+.+-+++-+..|++.++.....+.+-.-.. .. .+.-+++||.+.+
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~-~~~~~~~Sp~~~~--- 371 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQ-APQLVAMSPNQAY--- 371 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hc-CcceeeeCcccch---
Confidence 5433221 111111112333332222344677777888888876544443322111 12 3677899999997
Q ss_pred EEEEEeCCcceEEEEEccCceE
Q 022184 215 FCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 215 ~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
....+.|.++++.+++..+
T Consensus 372 ---Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 372 ---LLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred ---heeecCCceEEEEecCCCC
Confidence 3345567899988876543
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=2.7 Score=35.22 Aligned_cols=118 Identities=6% Similarity=0.032 Sum_probs=75.9
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
.++|.++.|++|.+.||+--.+.+|.+++....+........ -......|....|+.+ .-+|.....| +-+|...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~---ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE---CKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH---hccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 569999999999999999999999999998655432221111 1112345888999866 5566666555 6666554
Q ss_pred Cc-ceecccccCCccEEEEEecCCCcEEEEEe--CCCcEEEEeCCC
Q 022184 143 SL-RIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTED 185 (301)
Q Consensus 143 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~ 185 (301)
.. +.++..+.+.-.|.-..|+++.+.++-++ ..+++.=+.+++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 33 23344555666888889999887543333 334444444443
No 446
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.32 E-value=1.3 Score=37.68 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=88.6
Q ss_pred EeeCCCEEE-EeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCc-------EEEEEeCCCcEEEEeCCC-CceEE
Q 022184 120 FSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-------FLATTSTDGSARIWKTED-GVAWT 190 (301)
Q Consensus 120 ~s~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~-~~~~~ 190 (301)
...+.++|+ .|.....++-.|++.|+.+-....+.. + -+.|.|+.+ .-+.|-.+..|.-.|.|- |..+.
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 334555554 455567788889999988776655543 3 567777432 123344455555556553 32222
Q ss_pred EEeec---CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc
Q 022184 191 FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267 (301)
Q Consensus 191 ~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 267 (301)
..... ......+..-..+|- ++.++..|-|++||.-.-+....+.+....|-.+..+.+|+++++.+. ..
T Consensus 553 v~esKdY~tKn~Fss~~tTesGy------Ia~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~y 625 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGY------IAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NY 625 (776)
T ss_pred eeeehhccccccccccccccCce------EEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ce
Confidence 22111 111122222223333 688899999999997654444556777788999999999999888775 46
Q ss_pred EEEEeCC
Q 022184 268 ICVVDVK 274 (301)
Q Consensus 268 i~i~~~~ 274 (301)
+.+-|++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 7777764
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=94.27 E-value=3.3 Score=35.88 Aligned_cols=149 Identities=8% Similarity=0.009 Sum_probs=70.7
Q ss_pred cEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCCCeEEEEecC--CcEEEEEEcCCcc
Q 022184 20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGAT 97 (301)
Q Consensus 20 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--~~i~~w~~~~~~~ 97 (301)
.+.++||.... ...-.+|.|++....+...+.. .........+. -++...+.|+.+ ..+..||...+.-
T Consensus 273 ~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W 343 (480)
T PHA02790 273 VVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPM----NSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW 343 (480)
T ss_pred EEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCC----CchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE
Confidence 45566664321 1122477788877666443221 11111122222 356666777754 3577777654322
Q ss_pred ccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC---eEEEEeCCCcceecc--cccCCccEEEEEecCCCcEEEEE
Q 022184 98 DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATT 172 (301)
Q Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~ 172 (301)
. ....+..... ......-+|+..+.|+.++ .+..||.++.+-... +....... ++ ..-+++..+.|
T Consensus 344 --~----~~~~l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G 414 (480)
T PHA02790 344 --V----NMPSLLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG 414 (480)
T ss_pred --E----ECCCCCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC
Confidence 1 1222221111 1122233677778877543 467788766543221 11111111 12 12356666665
Q ss_pred eCCCcEEEEeCCCCceE
Q 022184 173 STDGSARIWKTEDGVAW 189 (301)
Q Consensus 173 ~~d~~i~i~d~~~~~~~ 189 (301)
|.+.+||.++.+-.
T Consensus 415 ---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 415 ---RNAEFYCESSNTWT 428 (480)
T ss_pred ---CceEEecCCCCcEe
Confidence 45778888766543
No 448
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=94.13 E-value=3.1 Score=37.50 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=52.7
Q ss_pred EEEEecCCCcEEEEEeCCC-----cEEEEeCC---CCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEE
Q 022184 158 LDMDFSLDSEFLATTSTDG-----SARIWKTE---DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~d~-----~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (301)
..+.|-|+|..+++-..|| .|..+.-+ -|+.- +..+.+..+..++|+-.... ......+.+.+|
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~--lr~~~dEk~~~~~wn~~s~v------lav~~~n~~~lw 321 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFD--LRVGCDEKAFLENWNLLSTV------LAVAEGNLLKLW 321 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcc--ccCCchhhhhhhhhhHHHHH------HHHhhcceEEEE
Confidence 4589999999999977655 24555422 12211 11122334566677665553 344556789999
Q ss_pred EccCceEeeeeeccCCCcEEEEEcCCC
Q 022184 230 DISTWNKIGHKRLLRKPASVLSISLDG 256 (301)
Q Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~s~~~ 256 (301)
-..+..-.-.....-..+.-+.|+|..
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeecccc
Confidence 887654332222223456678888853
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=1.1 Score=38.19 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=50.5
Q ss_pred CeeEEEEeeCCCEEEEeecCCeEEEEeC---------CCccee--cc-------cc--cCCccEEEEEecCCC---cEEE
Q 022184 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHW---------PSLRII--LD-------EP--KAHKSVLDMDFSLDS---EFLA 170 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~---------~~~~~~--~~-------~~--~~~~~i~~~~~~~~~---~~l~ 170 (301)
.|..+..++.|..++-.+.+|.+.++-. +.++.. .+ +. ..+-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5677888999999988888886554321 223221 00 11 111256788999975 5788
Q ss_pred EEeCCCcEEEEeCCCCceE
Q 022184 171 TTSTDGSARIWKTEDGVAW 189 (301)
Q Consensus 171 ~~~~d~~i~i~d~~~~~~~ 189 (301)
.-+.|..+++||+.....+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8888999999999765444
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=1.3 Score=37.67 Aligned_cols=77 Identities=10% Similarity=-0.045 Sum_probs=48.4
Q ss_pred eeEEEEccCCCcceEEEEEEeCCcceEEEEEcc---------CceEe---e------eeec--cCCCcEEEEEcCCC---
Q 022184 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---------TWNKI---G------HKRL--LRKPASVLSISLDG--- 256 (301)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~---------~~~~~---~------~~~~--~~~~v~~~~~s~~~--- 256 (301)
|..+..++.|.. ++-.+.+|.+.++=.+ .++.. + .+.. ..-.+..++|+|+.
T Consensus 106 V~~vl~s~~GS~-----VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 106 VYQVLLSPTGSH-----VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEecCCCce-----EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence 667888899987 4556667755544311 22211 0 0101 11235678999975
Q ss_pred CEEEEeeCCCcEEEEeCCCceeecc
Q 022184 257 KYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 257 ~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
..|..-+.|+.|++||+.....+..
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhc
Confidence 6788888899999999987665543
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.71 E-value=0.69 Score=33.70 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCC------CEEEEeeCCCcEEEEeCCC
Q 022184 245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 245 ~~v~~~~~s~~~------~~l~~~~~d~~i~i~~~~~ 275 (301)
..+..++|||-| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999953 3788889999999999763
No 452
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.57 E-value=3.4 Score=33.67 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=86.2
Q ss_pred CCCeeEEEEeeCCCEEEEeecCCe------EEEEeCCC--cc--ee-----cccccCCc--------cEEEEEecCCCcE
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDGH------LRIMHWPS--LR--II-----LDEPKAHK--------SVLDMDFSLDSEF 168 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~------i~v~d~~~--~~--~~-----~~~~~~~~--------~i~~~~~~~~~~~ 168 (301)
-+..+.+.+.+++..+++.+++|. +..+++.. +. .+ ..+....+ ...+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 367788999976666777777777 65555543 10 00 01111111 3457888778888
Q ss_pred EEEEeCC------CcEEEEeCCCCceEEEEee--------------cCCCCeeEEEEccCCCcceEEEEEEeCCc-----
Q 022184 169 LATTSTD------GSARIWKTEDGVAWTFLTR--------------NSDEKIELCRFSKDGTKPFLFCTVQRGDK----- 223 (301)
Q Consensus 169 l~~~~~d------~~i~i~d~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----- 223 (301)
+++.-.+ ..|..++.. |+....+.. ........++++|+|+.++.+.=..-..|
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 788888876 655444421 12234789999999996443221110112
Q ss_pred ------ceEEEEEccC-ceEe----eeeec-----cCCCcEEEEEcCCCCEEEE
Q 022184 224 ------ALLAVYDIST-WNKI----GHKRL-----LRKPASVLSISLDGKYLAM 261 (301)
Q Consensus 224 ------~~i~~~d~~~-~~~~----~~~~~-----~~~~v~~~~~s~~~~~l~~ 261 (301)
-.|..||..+ ++.. ..+.. ....++.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2344566554 2121 11121 3467889999999987664
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.48 E-value=0.41 Score=43.24 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=83.5
Q ss_pred CceeEEEeeeecCCCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEE-----------EC
Q 022184 4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA-----------VN 72 (301)
Q Consensus 4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~ 72 (301)
+.++--+.|+|--.+..++-+|. .++.+++..++.... ..+.+|...+..++ .+
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~------~~~~i~lL~~~ra~~---------~l~rsHs~~~~d~a~~~~g~~~l~~lS 244 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGL------KGGEIRLLNINRALR---------SLFRSHSQRVTDMAFFAEGVLKLASLS 244 (1283)
T ss_pred CCCcceeeecccccccceeeecc------CCCceeEeeechHHH---------HHHHhcCCCcccHHHHhhchhhheeeC
Confidence 34455667775433344444444 445567777765432 22445666655554 58
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCcc-ccccccccCCCCCCC-CCeeEEEEeeCCC---------EEEEee-cCCeEEEEe
Q 022184 73 PSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDA-GPQKCLSFSVDGS---------RFAAGG-VDGHLRIMH 140 (301)
Q Consensus 73 ~~~~~l~~~~~d~~i~~w~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~s~~~~---------~l~~~~-~dg~i~v~d 140 (301)
|||+.++.+..||.++.|.+.-... ..+.. .....|. .+-.|.-++.+.. ++++++ .+..+++|.
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl---hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVHRCL---HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccHhhh---hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 9999999999999999998753322 11111 1111222 2222222332211 233333 346688888
Q ss_pred CCCcceecccccCCccEEEEEecCCCc------------EEEEEeCCCcEEEEeCCC
Q 022184 141 WPSLRIILDEPKAHKSVLDMDFSLDSE------------FLATTSTDGSARIWKTED 185 (301)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~------------~l~~~~~d~~i~i~d~~~ 185 (301)
....++...+ ..+.|..+. -++++ .+++-+.++.|++|.-+.
T Consensus 322 ~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 322 EAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred ccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 7666654221 123344444 22332 133455678888886544
No 454
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.41 E-value=3 Score=32.55 Aligned_cols=155 Identities=11% Similarity=-0.040 Sum_probs=96.1
Q ss_pred CeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEE-EE
Q 022184 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FL 192 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~ 192 (301)
....++-.|||..-+++...+.|--.|..+++...--.+....-..|..-|||..-++-+.. -|.-.|-++.+... .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34667888999999999888889888999998765444445566788889998866664332 45555655544322 11
Q ss_pred e-ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeec-cCCCcEEEEEcCCCCEEEEeeCCCcEEE
Q 022184 193 T-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICV 270 (301)
Q Consensus 193 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i 270 (301)
. .+.........|.+.|..- +++ ..|.---.|..+. .+..+.. .....+.++..|||..-++.-.++.|..
T Consensus 142 p~~~a~~nlet~vfD~~G~lW-----Ft~-q~G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLW-----FTG-QIGAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred ccccCCCcccceeeCCCccEE-----Eee-ccccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEE
Confidence 1 2223457788899999852 222 1211111121111 1222222 2234577899999998888777777888
Q ss_pred EeCCCc
Q 022184 271 VDVKKM 276 (301)
Q Consensus 271 ~~~~~~ 276 (301)
.|..++
T Consensus 215 idp~~~ 220 (353)
T COG4257 215 IDPFAG 220 (353)
T ss_pred cccccC
Confidence 887665
No 455
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.18 E-value=0.9 Score=40.01 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=45.3
Q ss_pred eCCCEEEEeecCCeEEEEeCCC----ccee--------------cccc--------cCCccEEEEEecC----CCcEEEE
Q 022184 122 VDGSRFAAGGVDGHLRIMHWPS----LRII--------------LDEP--------KAHKSVLDMDFSL----DSEFLAT 171 (301)
Q Consensus 122 ~~~~~l~~~~~dg~i~v~d~~~----~~~~--------------~~~~--------~~~~~i~~~~~~~----~~~~l~~ 171 (301)
++...++++..||.+....... +... ..+. ........+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888899888877653 1111 0010 0112355566666 6779999
Q ss_pred EeCCCcEEEEeCCCCceEEEEe
Q 022184 172 TSTDGSARIWKTEDGVAWTFLT 193 (301)
Q Consensus 172 ~~~d~~i~i~d~~~~~~~~~~~ 193 (301)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.17 E-value=0.012 Score=48.70 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=92.4
Q ss_pred cCCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEE-EeecCCeEEEEe
Q 022184 62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH 140 (301)
Q Consensus 62 h~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~v~d 140 (301)
|-.......|-|.+..++.++.+..+..||-..... .....++....++|..++..++ .+-..+.+.+||
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------le~n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhccee---------cccCCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 444455677888888899888999899998765432 1122335566788888777654 455678999999
Q ss_pred CCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCC
Q 022184 141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210 (301)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (301)
+.+.....--.+....-.-+.|++....++.+...+.+.|++..+.+.+...-. +..++.++++.+.+.
T Consensus 104 ~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk-h~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 104 VNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK-HQRRGTQIAVTLEDY 172 (615)
T ss_pred hhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc-cccceeEEEecccce
Confidence 976543221112221112267898888888888889999999876654443322 334678888888765
No 457
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.15 E-value=2.8 Score=31.42 Aligned_cols=139 Identities=9% Similarity=0.054 Sum_probs=78.0
Q ss_pred CEEEEeecCCeEEEEeCCCc--ceecccccCCccEEEEEecCCCcEEEEEeCCC------cEEEEe-CCC----Cce---
Q 022184 125 SRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------SARIWK-TED----GVA--- 188 (301)
Q Consensus 125 ~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d-~~~----~~~--- 188 (301)
..|+.+...+.|.+|++.+. +....+ ..-+.|..+.++..|++|+|--.+. .+|+|- .+. ..+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 45555566788999999832 233333 3337899999999999999965332 456651 111 111
Q ss_pred ------------------EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-eeee---e-----
Q 022184 189 ------------------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHK---R----- 241 (301)
Q Consensus 189 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~---~----- 241 (301)
+..+..+-..++.+++..|-... ++.++ ++.+.+|.+..... ...+ .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-----LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-----LLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-----EEEEc-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 12222233345677888776544 34444 55788998765433 1100 0
Q ss_pred -cc--CCCcEEEEEcCCCCEEEEeeCCCcEEEEeC
Q 022184 242 -LL--RKPASVLSISLDGKYLAMGSKDGDICVVDV 273 (301)
Q Consensus 242 -~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~ 273 (301)
.+ +-.+..+++. +.|+|..+. -.++++.+
T Consensus 182 ~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 01 1123344443 557777764 45776654
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.15 E-value=4.9 Score=34.27 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEE--E----eecCCCCeeEEEEccCC----CcceEEEEEEeC---
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF--L----TRNSDEKIELCRFSKDG----TKPFLFCTVQRG--- 221 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~----~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~--- 221 (301)
...+.|+|.||+++|++--..|.|++++..++..... + ..........++++|+- ...++++..+..
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4568999999998777765569999998655432211 1 11123457899999884 211222222211
Q ss_pred ----CcceEEEEEccCc-------eEe-eeee-ccCCCcEEEEEcCCCCEEEEeeCC
Q 022184 222 ----DKALLAVYDISTW-------NKI-GHKR-LLRKPASVLSISLDGKYLAMGSKD 265 (301)
Q Consensus 222 ----~~~~i~~~d~~~~-------~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 265 (301)
....|.-|.+... +.+ ..+. ...+.-..|.|.|||++.++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 111 1111 112335678999999866655443
No 459
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=2.8 Score=31.27 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCEEEEeec--CCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEE-EEeCCCcEEEEeCCCCceEEEEeecCCCC
Q 022184 123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEK 199 (301)
Q Consensus 123 ~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 199 (301)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+..+. -.-.+|.-..+|.++-+.+..+.-..++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG- 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG- 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence 4455555543 45799999998887654432211111111111133222 2335777888998888777666533322
Q ss_pred eeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc--C---CCcEEEEEcCCCCEEEEeeCCCcEEEEeCC
Q 022184 200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--R---KPASVLSISLDGKYLAMGSKDGDICVVDVK 274 (301)
Q Consensus 200 v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~---~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~ 274 (301)
.. ...|++. +..+.....+..-|.++.......... . ..++.+.|- ||...|-.=.+..|...+.+
T Consensus 134 -Wg--Lt~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 134 -WG--LTSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred -ee--eecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 22 3456665 455555667777777665443332221 1 123334442 45555544445566666666
Q ss_pred Cceeecccc-----------ccccCccEEEEEEccCC
Q 022184 275 KMEINHWSK-----------RLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 275 ~~~~~~~~~-----------~~~~~~~v~~~~~spdg 300 (301)
+|+....+. ..+ ....+.+++.|++
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~ 240 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQ 240 (262)
T ss_pred CCcEEEEEEccCCchhcCccccc-cccccceeecCcC
Confidence 666555432 112 3356677777764
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.84 E-value=5.1 Score=33.64 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=71.1
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCCCce-EEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCce
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 235 (301)
...+..++++.+++.+.....++-|| .+.. -..........+..+.|.+++.. +..+..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEE-ecCCCC
Confidence 44456677887777766543333444 2322 13333334456889999999884 44445565543 233332
Q ss_pred -----Eeeeeec--cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecccc--ccccCccEEEEEEccCC
Q 022184 236 -----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQ 300 (301)
Q Consensus 236 -----~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg 300 (301)
....... ....+..+.|.+++..+++| ..|.+..-. ..++.-.... ..- ....+.+.|.+++
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-~~~ly~v~f~~~~ 382 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-AANLYSVKFFDDK 382 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-CcceeEEEEcCCC
Confidence 1122211 12358889999887766555 567665554 3333222111 111 4567788887754
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.75 E-value=0.59 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=19.3
Q ss_pred cCCCcEEEEEcCCCCEEEEeeCC---CcEEEE
Q 022184 243 LRKPASVLSISLDGKYLAMGSKD---GDICVV 271 (301)
Q Consensus 243 ~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~ 271 (301)
....-....|||||+.|+..+.. |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456788999999988877543 555554
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=3.7 Score=39.11 Aligned_cols=137 Identities=14% Similarity=0.187 Sum_probs=82.1
Q ss_pred ecCCeEEEEeCCCcceecccccCCccEEEEEe--------cCCCcEEEEEeCCCcEEEEeCCC----Cce---EEEEeec
Q 022184 131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--------SLDSEFLATTSTDGSARIWKTED----GVA---WTFLTRN 195 (301)
Q Consensus 131 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~i~i~d~~~----~~~---~~~~~~~ 195 (301)
+-|+.+.+|+.+++.....+.+-...|..+.. .|.=++++..+.--.|.++-+.- +.. ...+...
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 34789999999986655544444444444432 23334444444445555554321 111 1112211
Q ss_pred -CCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc----Cc------eE--------------eeeee-ccCCCcEE
Q 022184 196 -SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----TW------NK--------------IGHKR-LLRKPASV 249 (301)
Q Consensus 196 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~------~~--------------~~~~~-~~~~~v~~ 249 (301)
.+..|.++....+|+ ++.+|.|| .+|.+. .+ .. +..+. .+..+|..
T Consensus 176 ~dg~~V~~I~~t~nGR------IF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR------IFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cCCceEEEEEeccCCc------EEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 244588999888888 46667777 444431 10 00 11222 44678999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEeCCC
Q 022184 250 LSISLDGKYLAMGSKDGDICVVDVKK 275 (301)
Q Consensus 250 ~~~s~~~~~l~~~~~d~~i~i~~~~~ 275 (301)
+.....-..+.+-+..|.|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888999999999999999975
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.40 E-value=5.6 Score=33.06 Aligned_cols=193 Identities=12% Similarity=0.049 Sum_probs=98.6
Q ss_pred eEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCC-c
Q 022184 77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K 155 (301)
Q Consensus 77 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~ 155 (301)
.+..+..+|.|.-.|.+++.......... ....+..-.+..+|+ |++++.++.++.+|.++|+.+....... -
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 44444678878888877776433221110 011222222233665 7788889999999988888876655443 1
Q ss_pred cEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecC--CCCeeEEEEccCCCcceEEEEEEeCC--cceEEEEEc
Q 022184 156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI 231 (301)
Q Consensus 156 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~ 231 (301)
.+.....-.++ .+...+.++.+...|..+++..-...... ...+..-....++. +..+.. ++.+.-.|.
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA 216 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence 11111222233 33334467888888888888766544322 11111111122232 233333 556777777
Q ss_pred cCceEeeeeeccC----CCcE-EEEEcC----CCCEEEEeeCCCcEEEEeCCCceeeccc
Q 022184 232 STWNKIGHKRLLR----KPAS-VLSISL----DGKYLAMGSKDGDICVVDVKKMEINHWS 282 (301)
Q Consensus 232 ~~~~~~~~~~~~~----~~v~-~~~~s~----~~~~l~~~~~d~~i~i~~~~~~~~~~~~ 282 (301)
.+++..-..+... ..+. ...+.. .+.-++.++.++.+...+..+++.+-..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 7776653321111 1110 001100 0122355566777888888887766554
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.18 E-value=3.4 Score=30.06 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=24.8
Q ss_pred cEEEEEecCCC------cEEEEEeCCCcEEEEeCCC
Q 022184 156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED 185 (301)
Q Consensus 156 ~i~~~~~~~~~------~~l~~~~~d~~i~i~d~~~ 185 (301)
.+..++|+|.| -.|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999943 2788899999999998653
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=6 Score=37.61 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCcc
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT 97 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~ 97 (301)
......++|+|.-..+|.+...|.|+++-...-+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence 34567899999999999999999999998765443
No 466
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.95 E-value=0.91 Score=23.34 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=19.1
Q ss_pred CCccEEEEEecCCCcEEEEEe-CC--CcEEEE
Q 022184 153 AHKSVLDMDFSLDSEFLATTS-TD--GSARIW 181 (301)
Q Consensus 153 ~~~~i~~~~~~~~~~~l~~~~-~d--~~i~i~ 181 (301)
....-....|+|||+.|+.++ .+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334667889999999887766 34 555554
No 467
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.74 E-value=9.6 Score=34.32 Aligned_cols=141 Identities=20% Similarity=0.184 Sum_probs=72.6
Q ss_pred cCCccEEEEEecCCCcEEEEEeCCC----cEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEE-EEeCCcce-
Q 022184 152 KAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT-VQRGDKAL- 225 (301)
Q Consensus 152 ~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~- 225 (301)
.....+..+.|+|++..++..+.++ .+.+.+.. + .+ ......+....|+|++..+..... .....++.
T Consensus 57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~-~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LI-TKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ce-eeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3445678889999999988877333 23444443 2 11 122334777888888886322100 01111221
Q ss_pred ------EEEEEccCc-e-----------EeeeeeccCCCcEEEEEcCCCCEEEEeeCCCc-------EEEEeCCCceeec
Q 022184 226 ------LAVYDISTW-N-----------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-------ICVVDVKKMEINH 280 (301)
Q Consensus 226 ------i~~~d~~~~-~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-------i~i~~~~~~~~~~ 280 (301)
+.+|....+ + ...........+....++++++.++....+.. ..++...++....
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELES 210 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEE
Confidence 223322222 1 11122223345666677777777776654432 3333334555444
Q ss_pred cccccccCccEEEEEEccCCC
Q 022184 281 WSKRLHLGTSIALVEFCPTQR 301 (301)
Q Consensus 281 ~~~~~~~~~~v~~~~~spdg~ 301 (301)
.. .. ...+..+.|.++|+
T Consensus 211 ~~--~~-~~~~~~~~~~~~gk 228 (620)
T COG1506 211 LT--PG-EGSISKLAFDADGK 228 (620)
T ss_pred Ec--CC-CceeeeeeeCCCCC
Confidence 43 22 45588888888875
No 468
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.63 E-value=5.4 Score=31.21 Aligned_cols=199 Identities=12% Similarity=0.062 Sum_probs=116.5
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 143 (301)
.....++-.|||..-.++...+.|--.|..+++.... .+........+..-|||..-++-+.. -|.-.|-++
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y-------pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt 133 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY-------PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT 133 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEE-------ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc
Confidence 3456778888888777777777676677777665222 22233445677788888766654433 455556555
Q ss_pred cceec-cc--ccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCcceEEEEEEe
Q 022184 144 LRIIL-DE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR 220 (301)
Q Consensus 144 ~~~~~-~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 220 (301)
.+... .+ ...........|.+.|.+-+++.. |.---.|.. ...+..+..+.....+.++-.|+|.. -++.
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wyas 206 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYAS 206 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEEe
Confidence 44321 11 122246788899999998887753 221111211 12234444444555788889999985 2333
Q ss_pred CCcceEEEEEccCceEe--eeeeccCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 221 GDKALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 221 ~~~~~i~~~d~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
-.+..|-..|..++... ..-.......+.+--+|.|+.-++....+.+..||.....
T Consensus 207 lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 207 LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 34556777776655321 1111112334556667888888887777888888876543
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.43 E-value=1.2 Score=23.21 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CCCcEEEEeCCCCceEEEEeecCCCCeeEEEE
Q 022184 164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205 (301)
Q Consensus 164 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 205 (301)
|++++|+++. .+++|.++|..+++.+..+.... ....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~--~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG--YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC--CCceEEe
Confidence 5677665544 57899999999888888776532 2445544
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.39 E-value=1.7 Score=38.37 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=43.7
Q ss_pred CCCCeEEEEecCCcEEEEEEcCCc---cccc-----------cccccCC-----CCCCCCCeeEEEEee----CCCEEEE
Q 022184 73 PSGDDFVCSTTNGGCKLFEVYGGA---TDIN-----------LLAKKMP-----PLQDAGPQKCLSFSV----DGSRFAA 129 (301)
Q Consensus 73 ~~~~~l~~~~~d~~i~~w~~~~~~---~~~~-----------~~~~~~~-----~~~~~~~v~~~~~s~----~~~~l~~ 129 (301)
++...++.+..||.+......... .... ....... ..........++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466788888899988888876511 1000 0000000 001123455566666 6788999
Q ss_pred eecCCeEEEEeCCCcceec
Q 022184 130 GGVDGHLRIMHWPSLRIIL 148 (301)
Q Consensus 130 ~~~dg~i~v~d~~~~~~~~ 148 (301)
.+.|+.+|+||+.+++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EETTSEEEEEETTTTCEEE
T ss_pred EeCCCeEEEEECCCCeEEE
Confidence 9999999999999988843
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=6.2 Score=37.72 Aligned_cols=143 Identities=13% Similarity=0.246 Sum_probs=82.8
Q ss_pred CCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--------CCCCCeEEEEecCCcEEEEEEcCCccccc--c
Q 022184 32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--------NPSGDDFVCSTTNGGCKLFEVYGGATDIN--L 101 (301)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~d~~i~~w~~~~~~~~~~--~ 101 (301)
..||.+-+|.|+.+.. + ..+.+-...|..+.. .|.=++++....--.|.++-+.-.+.... .
T Consensus 96 TiDn~L~lWny~~~~e-~-------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-L-------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred EeCCeEEEEEcCCCCc-c-------ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 3789999999987432 1 223444455555543 23334444444445577776654332111 1
Q ss_pred ccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeC--CCc-----c-e----------------ecccc-cCCcc
Q 022184 102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW--PSL-----R-I----------------ILDEP-KAHKS 156 (301)
Q Consensus 102 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~--~~~-----~-~----------------~~~~~-~~~~~ 156 (301)
.......-.....|+++....+|+.+++|- ||. +|.+ ... + + +.++. .+.++
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 111111111235688888777887666655 553 4433 110 0 0 11233 34568
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEeCCC
Q 022184 157 VLDMDFSLDSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 157 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 185 (301)
|..++....-..+.+-+..++|.+||+..
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccC
Confidence 99999998888999999999999999976
No 472
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=90.69 E-value=12 Score=33.51 Aligned_cols=160 Identities=15% Similarity=0.150 Sum_probs=83.3
Q ss_pred CCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcce--ecccccCC-c-cEEEEEecC------CCcEEEEEeC-CC---c
Q 022184 112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAH-K-SVLDMDFSL------DSEFLATTST-DG---S 177 (301)
Q Consensus 112 ~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~-~-~i~~~~~~~------~~~~l~~~~~-d~---~ 177 (301)
...+..+.|.++++.+++...+|.|.+||...+.. +......+ . -+.+ .|-+ ...++++.+. ++ .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 47889999999999999999999999999932221 11111111 1 1111 2222 2335555444 32 4
Q ss_pred EEEEeC-CCCceEEEEe--ecCCCCeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEeeeeecc----C--CCc
Q 022184 178 ARIWKT-EDGVAWTFLT--RNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL----R--KPA 247 (301)
Q Consensus 178 i~i~d~-~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~--~~v 247 (301)
.+++.+ .....+..+. ...........|+- +|.. | .+ .+..|.+|++...+....+... . ..+
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~L-Y--~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKL-Y--QL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDL 280 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEE-E--EE----eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence 677777 1222222232 11111233334443 4442 2 22 5778999999887665544332 1 122
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184 248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
.++. .|..+.++.+. +++|++.|+.-...+..
T Consensus 281 vSl~-~~s~nRvLLs~-~nkIyLld~~~~siLse 312 (670)
T PF10395_consen 281 VSLK-PPSPNRVLLSV-NNKIYLLDLKFESILSE 312 (670)
T ss_pred eEee-cCCCCeEEEEc-CCEEEEEeehhhhhhhh
Confidence 2222 22333344332 46899999875444433
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.64 E-value=5.8 Score=29.79 Aligned_cols=106 Identities=10% Similarity=0.172 Sum_probs=58.7
Q ss_pred cEEEEEeCCCcEEEEeCCCC--ceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcc---eEEEE---Ecc--CceE
Q 022184 167 EFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNK 236 (301)
Q Consensus 167 ~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~---d~~--~~~~ 236 (301)
+.|+.+.....|.+|++.+. .....+. .-+.|..+.++..|++ ++.+=.-.... .+++| +.. ...+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDY--lvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDY--LVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccce--EEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 34444456678999999843 3344444 3457999999999997 22232223333 55664 221 1111
Q ss_pred ee-eeec---------------------cCCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 237 IG-HKRL---------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 237 ~~-~~~~---------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
+. .+.+ ...++.+++..|-.--|++|+ ++++.+|.+....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 11 1111 123567777777433455554 3578899876543
No 474
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.31 E-value=9.5 Score=31.73 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=79.9
Q ss_pred EEEEeecCCeEEEEeCCCcceecccccCC--ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCCCeeEE
Q 022184 126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC 203 (301)
Q Consensus 126 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 203 (301)
.++.+..+|.|.-+|..++..+.+..... ..+..-.+..+|+ ++.++.++.+..+|.++|+.+-.........+...
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 45555778888888888887654322221 1222222222665 77778888999999988888777664430011122
Q ss_pred EEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccC---CCcEEEEEcCCCCEEEEeeC--CCcEEEEeCCCcee
Q 022184 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---KPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEI 278 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~--d~~i~i~~~~~~~~ 278 (301)
..-.++. +...+.++.+.-.|..+++..-...... ..+..-....++ .++.+.. ++.+.-+|+.++..
T Consensus 149 ~v~~~~~------v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 149 PVVGDGT------VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred cEEcCcE------EEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcE
Confidence 2223333 2334467888888888877653332211 111110011223 3444444 55677777766655
Q ss_pred ecc
Q 022184 279 NHW 281 (301)
Q Consensus 279 ~~~ 281 (301)
...
T Consensus 222 ~w~ 224 (370)
T COG1520 222 KWS 224 (370)
T ss_pred eee
Confidence 443
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.95 E-value=1.7 Score=22.57 Aligned_cols=41 Identities=22% Similarity=0.151 Sum_probs=26.9
Q ss_pred cCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEE
Q 022184 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252 (301)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 252 (301)
|+++++ .++...++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~l----yv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKL----YVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEE----EEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 456653 244456789999999988887776653 33445554
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.76 E-value=4.9 Score=27.62 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=66.3
Q ss_pred EEEeeCCCEEEEeecCCeEEEEeCCCccee-------cccccCCccEEEEEecC-----CCcEEEEEeCCCcEEEEeCCC
Q 022184 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRII-------LDEPKAHKSVLDMDFSL-----DSEFLATTSTDGSARIWKTED 185 (301)
Q Consensus 118 ~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~-------~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~ 185 (301)
-.|......|+.++.-|.|.|.+....... ..+..-...|++++--+ +...|+.|+ ...+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 345555556888888899999987543211 12223345677765433 233555555 57899999987
Q ss_pred CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE
Q 022184 186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236 (301)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 236 (301)
...+.....+ ..+.++.+-.-+...-- ++..+.+..|.-||.+..+.
T Consensus 83 N~d~Fyke~~--DGvn~i~~g~~~~~~~~--l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 83 NSDLFYKEVP--DGVNAIVIGKLGDIPSP--LVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CchhhhhhCc--cceeEEEEEecCCCCCc--EEEECceEEEEEeCCCCcEE
Confidence 7655443333 23777766432221000 45556677888888765544
No 477
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.34 E-value=9.4 Score=30.27 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=81.7
Q ss_pred CcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCC
Q 022184 64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS 143 (301)
Q Consensus 64 ~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~ 143 (301)
+-+..+.++ +++...+..+.-+++.|+.+...+... ..+...+.-.++ .-.|++..++..|.-+.+.|+.+
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~-----~~lnt~gyaygv--~vsGn~aYVadlddgfLivdvsd 157 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLI-----GFLNTDGYAYGV--YVSGNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCccee-----ccccCCceEEEE--EecCCEEEEeeccCcEEEEECCC
Confidence 345666675 456777777767999999887653221 111112333344 44688888887565577788865
Q ss_pred ccee---cccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEee-cCCCCeeEEEEccCCCc
Q 022184 144 LRII---LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTK 211 (301)
Q Consensus 144 ~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 211 (301)
.+.. -+..........++.+ |++-..+..|+-+.+.|+.......-+.. ..+..+.++..+++..+
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y 227 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAY 227 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeE
Confidence 4331 1122222334566666 77788888999999999976544332221 12224777777776554
No 478
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.30 E-value=12 Score=31.22 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=85.2
Q ss_pred cCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE--CC-CCC-eEEEEecCCcEEEEEEcCCccccccccccCCCC
Q 022184 34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--NP-SGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL 109 (301)
Q Consensus 34 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~-~~~-~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 109 (301)
.+.|++|.+++....+.........+..-...+..+++ +| +|. +++....+|.+..|.+...... .+.......+
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-KVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-SEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-cEeeEEEEEe
Confidence 36799999998765553311100111112234677776 44 455 5556778899999988632211 0111112223
Q ss_pred CCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCCCc-----ceeccccc--CCccEEEEEec--CCCc-EEEEEe-CCCcE
Q 022184 110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-----RIILDEPK--AHKSVLDMDFS--LDSE-FLATTS-TDGSA 178 (301)
Q Consensus 110 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~--~~~~i~~~~~~--~~~~-~l~~~~-~d~~i 178 (301)
.....+..|........|+.+-++--|.-|+.+.. +.+....+ ....|..++.- ++++ +|+.++ .+++.
T Consensus 205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 33457888888888889999998887777776522 12211111 22467788774 3443 555555 56789
Q ss_pred EEEeCCCC-ceEEEE
Q 022184 179 RIWKTEDG-VAWTFL 192 (301)
Q Consensus 179 ~i~d~~~~-~~~~~~ 192 (301)
.+|+.+.. ..+..+
T Consensus 285 ~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 285 AVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEESSTT--EEEEE
T ss_pred EEEecCCCCcccceE
Confidence 99998753 334444
No 479
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.06 E-value=19 Score=33.34 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=88.0
Q ss_pred CCeEEEEecCCcEEEEEEcCCccccccccccC----CCCC-CCCCeeEEEEee--CCCEEEEeec----------CCeEE
Q 022184 75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKM----PPLQ-DAGPQKCLSFSV--DGSRFAAGGV----------DGHLR 137 (301)
Q Consensus 75 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~~s~--~~~~l~~~~~----------dg~i~ 137 (301)
+..++.++.|+.+.-.|.++++....+-.... ..+. ....-..+.-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 45777888899888888888876443211000 0000 000001111122 2345666642 68899
Q ss_pred EEeCCCcceecccccC---------Cc--------cE-EEEEecCCCcEEEEEe------------------CCCcEEEE
Q 022184 138 IMHWPSLRIILDEPKA---------HK--------SV-LDMDFSLDSEFLATTS------------------TDGSARIW 181 (301)
Q Consensus 138 v~d~~~~~~~~~~~~~---------~~--------~i-~~~~~~~~~~~l~~~~------------------~d~~i~i~ 181 (301)
-+|.++|+.+..+... .+ .+ ..++++|+...++... ..+.|.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 9999999887554311 00 11 2234455444433321 12457777
Q ss_pred eCCCCceEEEEee-cCCC-------CeeEEEEcc-CCCcceEEEEEEeCCcceEEEEEccCceEee
Q 022184 182 KTEDGVAWTFLTR-NSDE-------KIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIG 238 (301)
Q Consensus 182 d~~~~~~~~~~~~-~~~~-------~v~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 238 (301)
|.++|+..-.++. +|+. ...-+.+.. +|+. .-.++.+..+|.+.++|.++++.+.
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~--~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTT--VPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcE--eeEEEEECCCCEEEEEECCCCCEEe
Confidence 8888888766654 3321 111222332 5532 1126888999999999999998764
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.80 E-value=9.4 Score=29.56 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=73.4
Q ss_pred EEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeC-C--CcEEEEeCCC----CceEEEEe-ecCCCCeeEEEEcc
Q 022184 136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D--GSARIWKTED----GVAWTFLT-RNSDEKIELCRFSK 207 (301)
Q Consensus 136 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~----~~~~~~~~-~~~~~~v~~~~~~~ 207 (301)
-.+||+.+++..........-..+-.+.|||++|.+|+. + ..+++++... ........ ......-....--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 356888776543211111122333457789999999874 2 3578887644 11111000 11222344556678
Q ss_pred CCCcceEEEEEEeCCc-ceEEEEEccCc--eEee--eeec----c-CCCcEEEEEcCCCCEEEEeeCCCcEEEEeCCCce
Q 022184 208 DGTKPFLFCTVQRGDK-ALLAVYDISTW--NKIG--HKRL----L-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277 (301)
Q Consensus 208 ~~~~~~~~~~~~~~~~-~~i~~~d~~~~--~~~~--~~~~----~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~ 277 (301)
||+. ++.++.. ....+|..+.. .... .+.. . ..---.+-..|+|++++.+..+ -.|||..+.+
T Consensus 128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT 200 (243)
T ss_pred CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence 8886 3444443 44555554221 1111 0110 0 1112245668999999998765 4677888887
Q ss_pred eecccc
Q 022184 278 INHWSK 283 (301)
Q Consensus 278 ~~~~~~ 283 (301)
.++.+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 655543
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.04 E-value=3.8 Score=34.41 Aligned_cols=156 Identities=10% Similarity=0.072 Sum_probs=85.0
Q ss_pred CCeeEEEEeeCCCEEEEeecCCeEEEEeCCCcceec-ccccC-Cc----cEE-EEEecCCCcEEEEEeCCCcEEEE-eCC
Q 022184 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-DEPKA-HK----SVL-DMDFSLDSEFLATTSTDGSARIW-KTE 184 (301)
Q Consensus 113 ~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~-~~----~i~-~~~~~~~~~~l~~~~~d~~i~i~-d~~ 184 (301)
..+..+-..|||+.+..-+. .++.++++.+..... ++... .+ .|+ .+..-..|..++.++.||-|.-| |.+
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 45677888999998877664 778888886543211 11111 11 122 11122345668888888888766 554
Q ss_pred CCceE-----EEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEE
Q 022184 185 DGVAW-----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL 259 (301)
Q Consensus 185 ~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 259 (301)
.+... +.++. .+..+.. ..|+.+.-- .+.-...|.+.++.....+.+- +...-..+.-+++||++.++
T Consensus 300 ~~~~p~l~h~R~f~l-~pa~~~~--l~pe~~rkg---F~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 300 RDGQPHLNHIRNFKL-APAEVQF--LLPETNRKG---FYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred cCCCCcceeeecccc-Cccccee--eccccccce---EEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchh
Confidence 33221 11110 0111221 223322211 2344556667766544433332 22222356778999999998
Q ss_pred EEeeCCCcEEEEeCCCce
Q 022184 260 AMGSKDGDICVVDVKKME 277 (301)
Q Consensus 260 ~~~~~d~~i~i~~~~~~~ 277 (301)
++-. .|.++++.+++..
T Consensus 373 l~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 373 LSED-QGKIRLAQLENRN 389 (733)
T ss_pred eeec-CCceEEEEecCCC
Confidence 8764 4789999987653
No 482
>PRK13613 lipoprotein LpqB; Provisional
Probab=87.30 E-value=21 Score=31.92 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred CeeEEEEeeCCCEEEEeecCC-eEEEEeCCCcce----ecccccCCccEEEEEecCCCcEEEEEeC----CCcEEEEeCC
Q 022184 114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST----DGSARIWKTE 184 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~~~dg-~i~v~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~ 184 (301)
.+.+++.++++..++....++ .+++..+..+.. ......... ++.-.|.+++ .+-+... ...+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~-Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGR-LTSPSWDGRG-DLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCc-ccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Q ss_pred CCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCceE-------eeeeeccCCCcEEEEEcCCC
Q 022184 185 DGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRLLRKPASVLSISLDG 256 (301)
Q Consensus 185 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~s~~~ 256 (301)
+++....-.....+ .|..+..|+||....+ ++.....++|.+=-+..... ...+......+.+++|..++
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~ 518 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDS 518 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCC
Q ss_pred CEEEEeeCCC-cEEEEeCC
Q 022184 257 KYLAMGSKDG-DICVVDVK 274 (301)
Q Consensus 257 ~~l~~~~~d~-~i~i~~~~ 274 (301)
.+++.+...+ ...+|-+.
T Consensus 519 sL~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 519 QLVVLGREEGGVQQARYVQ 537 (599)
T ss_pred EEEEEeccCCCCcceEEEe
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.48 E-value=4.6 Score=25.62 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=29.8
Q ss_pred EEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEcCCCCEEEEee
Q 022184 218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263 (301)
Q Consensus 218 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 263 (301)
..+..+|.+.-||..+++....+... .-.+.+++++|+.+++++-
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 44556789999999998754333332 3568899999999887774
No 484
>PLN02193 nitrile-specifier protein
Probab=86.26 E-value=21 Score=30.89 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=70.5
Q ss_pred CCCEEEEeecC-----CeEEEEeCCCcceeccccc---CCc-cEEEEEecCCCcEEEEEeCCC-----cEEEEeCCCCce
Q 022184 123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AHK-SVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA 188 (301)
Q Consensus 123 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~---~~~-~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~ 188 (301)
++++.+.|+.+ ..+..||+.+.+-...... ... .-.+++. -++++++.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 56666777654 3578888876543221111 011 1112222 2566777776543 467788776543
Q ss_pred EEEEee--cCCCC-eeEEEEccCCCcceEEEEEEeCCc----ceEEEEEccCceEeeeeec---cCCCcEEEEEcCCCCE
Q 022184 189 WTFLTR--NSDEK-IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRL---LRKPASVLSISLDGKY 258 (301)
Q Consensus 189 ~~~~~~--~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~---~~~~v~~~~~s~~~~~ 258 (301)
...-.. ....+ -..++ .-+++. + +.++.+ ..+.+||+.+.+-...... ........+..-++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~-~~~gki-y----viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~i 380 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLE-VVQGKV-W----VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHI 380 (470)
T ss_pred EeCCCCCCCCCCCCCcEEE-EECCcE-E----EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEE
Confidence 321110 00000 01111 123442 2 223322 5689999887543211110 1111111122235677
Q ss_pred EEEeeCC--------------CcEEEEeCCCceee
Q 022184 259 LAMGSKD--------------GDICVVDVKKMEIN 279 (301)
Q Consensus 259 l~~~~~d--------------~~i~i~~~~~~~~~ 279 (301)
++.|+.+ +.+.+||+.+.+..
T Consensus 381 yv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 381 VIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred EEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence 7787753 24889998876544
No 485
>PRK13615 lipoprotein LpqB; Provisional
Probab=85.88 E-value=24 Score=31.20 Aligned_cols=154 Identities=10% Similarity=0.082 Sum_probs=90.0
Q ss_pred eEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEE-EEe
Q 022184 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWT-FLT 193 (301)
Q Consensus 116 ~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~ 193 (301)
.+++.++++..++....++.+.++...... ..+. ....++.-.|.+++ .+-+...+...++..... +.... ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~--~~~~-~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDA--VLLD-TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCcc--eeec-cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999998888778878877655221 1121 12346677788877 555554444455544432 33321 112
Q ss_pred ecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEcc--Cc--eEe----eeeeccCCCcEEEEEcCCCCEEEEe---
Q 022184 194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TW--NKI----GHKRLLRKPASVLSISLDGKYLAMG--- 262 (301)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~--~~~----~~~~~~~~~v~~~~~s~~~~~l~~~--- 262 (301)
...+..|..+..|+||....+ ++.....++|.+--+. .+ ..+ ..+......+.++.|..++.+.+.+
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Av--i~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~ 490 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLV--QLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP 490 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEE--EEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC
Confidence 223457999999999998443 3334445666663322 22 112 1111122478999999998876665
Q ss_pred eCCCcEEEEeCCC
Q 022184 263 SKDGDICVVDVKK 275 (301)
Q Consensus 263 ~~d~~i~i~~~~~ 275 (301)
+.+..+++..+..
T Consensus 491 ~~~~~v~~v~v~g 503 (557)
T PRK13615 491 DGERQVELHQVGG 503 (557)
T ss_pred CCCceEEEEECCC
Confidence 2335677777763
No 486
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=85.66 E-value=33 Score=32.50 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=45.9
Q ss_pred CceeEEEeeeecC---CCccEEEecCCccccCCcCceeEeeeCCCcceeeeCCceeccccccCCcceEEEE---CCCC--
Q 022184 4 GGTVTCGSWIKRP---ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV---NPSG-- 75 (301)
Q Consensus 4 ~~~v~~~~w~~~~---~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~-- 75 (301)
...|.|++..+++ .+.+++++|. .++.+++..+++...-..- ..++-..++.++.+ ..++
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~------~d~~vriisL~p~d~l~~l------s~q~l~~~~~s~~iv~~~~~~~~ 649 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALAS------VDNMVRIISLDPSDCLQPL------SVQGLSSPPESLCIVEMEATGGT 649 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeec------cccceeEEEecCcceEEEc------cccccCCCccceEEEEecccCCc
Confidence 4568899999888 3457888866 7888899999976643322 22333444444444 2233
Q ss_pred ---C-eEEEEecCCcEEEE
Q 022184 76 ---D-DFVCSTTNGGCKLF 90 (301)
Q Consensus 76 ---~-~l~~~~~d~~i~~w 90 (301)
+ +|.+|-.+|.+.-+
T Consensus 650 ~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 650 DVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred cceeEEEEecccccEEEEE
Confidence 1 55566666654444
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.43 E-value=18 Score=29.37 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=34.3
Q ss_pred CCCeEEEEec-----CCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCC----eEEEEeCCCc
Q 022184 74 SGDDFVCSTT-----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG----HLRIMHWPSL 144 (301)
Q Consensus 74 ~~~~l~~~~~-----d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~v~d~~~~ 144 (301)
+++..+.|+. ...+..||+.+.+-. . ...+.............++++.+.|+.++ .+..||..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~--~----~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF--E----LPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCee--E----CCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 4566666654 235777777655421 1 11111111112223344677778887653 3567888765
Q ss_pred ce
Q 022184 145 RI 146 (301)
Q Consensus 145 ~~ 146 (301)
+-
T Consensus 197 ~W 198 (323)
T TIGR03548 197 QW 198 (323)
T ss_pred ee
Confidence 43
No 488
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=85.38 E-value=20 Score=29.65 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred EEEEeeCCCEEEEeecCCeEEEEeC--CCcceecc---cccCC---ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCce
Q 022184 117 CLSFSVDGSRFAAGGVDGHLRIMHW--PSLRIILD---EPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA 188 (301)
Q Consensus 117 ~~~~s~~~~~l~~~~~dg~i~v~d~--~~~~~~~~---~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 188 (301)
++..+.+...+.+|..+|.|..-+. .+...... ..... +....++|...+.-|+.+..=--+...+...+..
T Consensus 69 ~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a 148 (376)
T KOG1520|consen 69 YTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLA 148 (376)
T ss_pred eEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcc
Q ss_pred EEEEeecCCCCee-----------EEEEccCCC----cceEEEEEEeCCcceEEEEEccCceEeeeeeccCCCcEEEEEc
Q 022184 189 WTFLTRNSDEKIE-----------LCRFSKDGT----KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253 (301)
Q Consensus 189 ~~~~~~~~~~~v~-----------~~~~~~~~~----~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s 253 (301)
........+.++. .+-|..... ..+++.+..+..+|++.-||..+ +....+...-.-.+.++.|
T Consensus 149 ~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t-K~~~VLld~L~F~NGlaLS 227 (376)
T KOG1520|consen 149 ELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST-KVTKVLLDGLYFPNGLALS 227 (376)
T ss_pred eeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcc-cchhhhhhcccccccccCC
Q ss_pred CCCCEEEEe--eCCCcEEEE
Q 022184 254 LDGKYLAMG--SKDGDICVV 271 (301)
Q Consensus 254 ~~~~~l~~~--~~d~~i~i~ 271 (301)
||+.+++.+ +.....+.|
T Consensus 228 ~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 228 PDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCCCEEEEEeeccceeeeeE
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.38 E-value=11 Score=34.08 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred eeEEEEeeCCCEEEEeecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCC-CceEEEEe
Q 022184 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLT 193 (301)
Q Consensus 115 v~~~~~s~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~ 193 (301)
+.++.-+|.+..++.+..||.|++|++..... .++-....+-..+.|...| |++...|..+.-|.-.. -+....+.
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q-ski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvqqqfdyn 93 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ-SKICEEAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQQQFDYN 93 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccch-hhhhhhcCCccceeeeccc--eEEEeccchhheeeccCcchhhcccc
Q ss_pred ecCCCCeeEEEEccCCCcceEEEEEEeC--------------------------CcceEEEEEccCceEeeeeeccCCCc
Q 022184 194 RNSDEKIELCRFSKDGTKPFLFCTVQRG--------------------------DKALLAVYDISTWNKIGHKRLLRKPA 247 (301)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~i~~~d~~~~~~~~~~~~~~~~v 247 (301)
........++...|..+. +.+. ....|.+-|+.++.....+....-.|
T Consensus 94 dqsekefss~~cdptaqn------vvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~ai 167 (1636)
T KOG3616|consen 94 DQSEKEFSSILCDPTAQN------VVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAI 167 (1636)
T ss_pred chhhhhccceecCchhhh------hhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcch
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEeCCCceeeccccccccCc
Q 022184 248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT 289 (301)
Q Consensus 248 ~~~~~s~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 289 (301)
..+..-...+|++.-+.. +|.|=|+.+........++. .+
T Consensus 168 delkilgkdryli~~ts~-siii~d~es~rfsei~wqgs-gg 207 (1636)
T KOG3616|consen 168 DELKILGKDRYLIAHTSE-SIIIADLESNRFSEIAWQGS-GG 207 (1636)
T ss_pred hhhhhccccceEEeeccc-cEEEeecccchhhhhhcccC-CC
No 490
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.37 E-value=24 Score=30.67 Aligned_cols=119 Identities=8% Similarity=-0.061 Sum_probs=54.9
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCC--CCeeEEEEccCCCcceEEEE--------EEeCCcceEEEE
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLFCT--------VQRGDKALLAVY 229 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~ 229 (301)
+...++|.+++... ..+..+|+- |+.+........ ..=..+..-|+|+.+++... -.....-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56678888776554 788888884 555555443221 01245667788876432210 000011224444
Q ss_pred EccCceEeeeee---------c-------------cC-----CCcEEEEEcC-CCCEEEEeeCCCcEEEEeCCCceeecc
Q 022184 230 DISTWNKIGHKR---------L-------------LR-----KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHW 281 (301)
Q Consensus 230 d~~~~~~~~~~~---------~-------------~~-----~~v~~~~~s~-~~~~l~~~~~d~~i~i~~~~~~~~~~~ 281 (301)
| .+++.+.... . .. -.++++.+.+ ++.+|+++-....|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 4 4444321110 0 00 2578999999 556666665566899999888876654
Q ss_pred c
Q 022184 282 S 282 (301)
Q Consensus 282 ~ 282 (301)
+
T Consensus 309 l 309 (477)
T PF05935_consen 309 L 309 (477)
T ss_dssp E
T ss_pred e
Confidence 4
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.82 E-value=20 Score=29.20 Aligned_cols=65 Identities=6% Similarity=0.027 Sum_probs=33.3
Q ss_pred CCCEEEEeecC-----CeEEEEeCCCccee---cccccCCccE--EEEEecCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 022184 123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTSTD-----GSARIWKTEDGV 187 (301)
Q Consensus 123 ~~~~l~~~~~d-----g~i~v~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~ 187 (301)
++.+++.|+.+ ..+..+|+.+.+.. ..+..-..+. .+++. -++++++.|+.. ..+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56667777654 35667777655421 1111111111 12222 256667776642 358888887765
Q ss_pred e
Q 022184 188 A 188 (301)
Q Consensus 188 ~ 188 (301)
-
T Consensus 151 W 151 (323)
T TIGR03548 151 W 151 (323)
T ss_pred e
Confidence 4
No 492
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=83.96 E-value=31 Score=30.86 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=66.4
Q ss_pred CeeEEEEeeCCCEEEEe-----ecCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEEEeCCCc---EEEEe--C
Q 022184 114 PQKCLSFSVDGSRFAAG-----GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS---ARIWK--T 183 (301)
Q Consensus 114 ~v~~~~~s~~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---i~i~d--~ 183 (301)
.+-.++.|||.++++.+ ++.-++++-|+.+++...... .+-...++|.+|++.|.-...|.. =++|- +
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~ 207 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRL 207 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCCeEEEEEEcCCCCcceEEEEec
Confidence 35567888999988765 344578999999988654332 233567899999986665554432 23333 3
Q ss_pred CC--CceEEEEeecCCCCeeEEEEccCCCcceEEEEEEeCCcceEEEEEccCc
Q 022184 184 ED--GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234 (301)
Q Consensus 184 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 234 (301)
.+ ......+..........+.-+.+.++ ++..+.....+.+++.+....
T Consensus 208 gt~~~~d~lvyeE~d~~f~~~v~~s~s~~y--i~i~~~~~~tsE~~ll~a~~p 258 (682)
T COG1770 208 GTPGSSDELVYEEKDDRFFLSVGRSRSEAY--IVISLGSHITSEVRLLDADDP 258 (682)
T ss_pred CCCCCcceEEEEcCCCcEEEEeeeccCCce--EEEEcCCCcceeEEEEecCCC
Confidence 22 12222233233322334444455554 322334455667888887654
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.47 E-value=9.1 Score=24.29 Aligned_cols=37 Identities=11% Similarity=-0.040 Sum_probs=25.1
Q ss_pred eCCCcEEEEeCCCCceEEEEeecCCCCeeEEEEccCCCc
Q 022184 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211 (301)
Q Consensus 173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (301)
..+|.+.-||..+++....+..-. ..+.+++++|+..
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~d~~~ 70 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLY--FPNGVALSPDESF 70 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEES--SEEEEEE-TTSSE
T ss_pred CCCcCEEEEECCCCeEEEehhCCC--ccCeEEEcCCCCE
Confidence 346788899998887655554332 3789999999996
No 494
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=83.41 E-value=3.5 Score=19.42 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=16.2
Q ss_pred cEEEEEcCCCCEEEEeeCCCcEEEE
Q 022184 247 ASVLSISLDGKYLAMGSKDGDICVV 271 (301)
Q Consensus 247 v~~~~~s~~~~~l~~~~~d~~i~i~ 271 (301)
...++++++|+.+++=....+|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3567777777766666666666654
No 495
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.59 E-value=3.4 Score=20.03 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEEeecCCeEEEEeCCCcceecc
Q 022184 126 RFAAGGVDGHLRIMHWPSLRIILD 149 (301)
Q Consensus 126 ~l~~~~~dg~i~v~d~~~~~~~~~ 149 (301)
.+++++.+|.+..+|.++|+.+.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 677788899999999988876543
No 496
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=82.48 E-value=12 Score=34.76 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=51.0
Q ss_pred EEEee-cCCeEEEEeCCCcceecccccCCccEEEEEecCCCcEEEE-EeCCC-----cEEEEeCCCC-ceEEEEeecCCC
Q 022184 127 FAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDG-----SARIWKTEDG-VAWTFLTRNSDE 198 (301)
Q Consensus 127 l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~-----~i~i~d~~~~-~~~~~~~~~~~~ 198 (301)
|+... ..+.|.+-|...............+|.+.+|+|||+.|+. .+..+ .|.+-++++. ..+..+... ..
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve-~a 399 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVE-NA 399 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecc-cc
Confidence 44444 3358888888765554321455678999999999999988 44333 4788888753 223333322 22
Q ss_pred CeeEEEEccCCCc
Q 022184 199 KIELCRFSKDGTK 211 (301)
Q Consensus 199 ~v~~~~~~~~~~~ 211 (301)
.|..-...++|..
T Consensus 400 aiprwrv~e~gdt 412 (912)
T TIGR02171 400 AIPRWRVLENGDT 412 (912)
T ss_pred cccceEecCCCCe
Confidence 3444445555554
No 497
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=82.20 E-value=34 Score=30.03 Aligned_cols=222 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCcceEEEECCCCCeEEEEecCCcEEEEEEcCCccccccccccCCCCCCCCCeeEEEEeeCCCEEEEeecCCeEEEEeCC
Q 022184 63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142 (301)
Q Consensus 63 ~~~v~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v~d~~ 142 (301)
..+|..+.+..+| .+-.|+.|| +..||..+++. -......-..+|..+.-+-.|+ +.+|+.+| +++.+.+
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gka------lql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~ 233 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKA------LQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAE 233 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceE------EEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchh
Q ss_pred CcceecccccCCccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEEeecCCC-CeeEEEEccCCCcceEEEEEEeC
Q 022184 143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRG 221 (301)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 221 (301)
..+.......-....-.+........+-.|+..|..+.---+.+-.....+.++.. .+..+....+|. +..+.
T Consensus 234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs------LWv~t 307 (671)
T COG3292 234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS------LWVGT 307 (671)
T ss_pred hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC------Eeeec
Q ss_pred CcceEEEEEccCceEeeeeeccCCCcEEEEEcC--CCCEEEEeeCCCcEEEEeCCCceeeccccccccCccEEEEEEccC
Q 022184 222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT 299 (301)
Q Consensus 222 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~spd 299 (301)
.++.+++-+-.-.............+...+-.| .+..+-....-|.+.+-+-.+++......... ...|+.+++..+
T Consensus 308 ~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-g~nit~~~~d~~ 386 (671)
T COG3292 308 YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-GMNITTTLEDSR 386 (671)
T ss_pred cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-ccccchhhhccC
Q ss_pred CC
Q 022184 300 QR 301 (301)
Q Consensus 300 g~ 301 (301)
|+
T Consensus 387 g~ 388 (671)
T COG3292 387 GR 388 (671)
T ss_pred Cc
No 498
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=81.93 E-value=25 Score=28.17 Aligned_cols=173 Identities=11% Similarity=0.109 Sum_probs=85.9
Q ss_pred ceeEeeeCCCcceeeeCCceeccccccCCcceEEEECCCC-----CeEEEEe-cCCcEEEEEEcCCccccccccccCC--
Q 022184 36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-----DDFVCST-TNGGCKLFEVYGGATDINLLAKKMP-- 107 (301)
Q Consensus 36 ~~~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~~-- 107 (301)
.-+|+.||..+.++..........-........+.+.... .++..+. ..+-|.++|+.+++.-..... ...
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~ 111 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD 111 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee
Confidence 3466666666655543222221122235567888886622 2333333 335799999988765221111 111
Q ss_pred -----------CCCCCCCeeEEEEee---CCCEEEEeecCCeEEEEeCCC-----cce---e-----cccccC-CccEEE
Q 022184 108 -----------PLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPS-----LRI---I-----LDEPKA-HKSVLD 159 (301)
Q Consensus 108 -----------~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~v~d~~~-----~~~---~-----~~~~~~-~~~i~~ 159 (301)
.+.....+..++.+| +++.|....-.+ -++|.+++ ... . .+..+. ......
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g 190 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG 190 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCce
Confidence 111123467777766 666776665433 22333221 110 0 011111 135567
Q ss_pred EEecCCCcEEEEEeCCCcEEEEeCCCC---ceEEEEeecC--CCCeeEEEEcc--CCC
Q 022184 160 MDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNS--DEKIELCRFSK--DGT 210 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~--~~~v~~~~~~~--~~~ 210 (301)
++++++|.++++--..+.|..|+..+. +....+.... -..+..+.+.+ +|.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence 888999999989889999999998762 1223332222 23567888888 555
No 499
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=81.57 E-value=26 Score=28.23 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred eecCCeEEEEeCCCcceecccccCC------------ccEEEEEecCCCcEEEEEeC------------------CCcEE
Q 022184 130 GGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLATTST------------------DGSAR 179 (301)
Q Consensus 130 ~~~dg~i~v~d~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~l~~~~~------------------d~~i~ 179 (301)
|-..|.+.+.| .+.+.+.++.... .....+.+.++|+.|++.-. |+.+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~ 99 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQ 99 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeE
Q ss_pred EEeCCCCceEEEEeecCCCC--------------------------eeEEEEccCCCcceEEEEEEeCCcceEEEEEccC
Q 022184 180 IWKTEDGVAWTFLTRNSDEK--------------------------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233 (301)
Q Consensus 180 i~d~~~~~~~~~~~~~~~~~--------------------------v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 233 (301)
-.|+.+++.+.......--. ++++...++|.+ +++...-..|.+.|.++
T Consensus 100 EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~y-----LiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 100 EIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDY-----LISSRNTSTIYKIDPST 174 (299)
T ss_pred EeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccE-----EEEecccCEEEEEECCC
Q ss_pred ceEeeeeeccCCCcEE-----EEEcCCCCEEEEeeCCCcEEEEe
Q 022184 234 WNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDGDICVVD 272 (301)
Q Consensus 234 ~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~d~~i~i~~ 272 (301)
++.+-.+.+....-.. .+|-.|-+++-.+..++.|.+||
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.45 E-value=46 Score=30.97 Aligned_cols=68 Identities=15% Similarity=-0.002 Sum_probs=43.8
Q ss_pred ccEEEEEecCCCcEEEEEeCCCcEEEEeCCCCceEEEE----ee--------------cCCCCeeEEEEccCCCcceEEE
Q 022184 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL----TR--------------NSDEKIELCRFSKDGTKPFLFC 216 (301)
Q Consensus 155 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~--------------~~~~~v~~~~~~~~~~~~~~~~ 216 (301)
+.|.++....-+..++..-.||+|.++|-.+.+.+... .. +...++..++|||.+..
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~----- 334 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS----- 334 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-----
Confidence 35667777667778999999999999998876554433 10 00112335778888875
Q ss_pred EEEeCCcceEE
Q 022184 217 TVQRGDKALLA 227 (301)
Q Consensus 217 ~~~~~~~~~i~ 227 (301)
++.-..++.+.
T Consensus 335 ~v~~~~~~~~~ 345 (753)
T PF11635_consen 335 LVQIDEDGKTK 345 (753)
T ss_pred EEEEecCCCce
Confidence 44445555544
Done!