Query 022185
Match_columns 301
No_of_seqs 117 out of 1483
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:40:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 9E-39 2E-43 301.9 29.4 297 2-298 267-563 (567)
2 PLN02487 zeta-carotene desatur 100.0 3.1E-34 6.8E-39 268.5 26.9 288 2-294 254-564 (569)
3 TIGR02732 zeta_caro_desat caro 100.0 7.7E-33 1.7E-37 256.8 25.8 274 2-280 178-474 (474)
4 TIGR02731 phytoene_desat phyto 100.0 1.2E-31 2.6E-36 248.8 26.7 274 4-279 174-452 (453)
5 TIGR03467 HpnE squalene-associ 100.0 7.8E-29 1.7E-33 227.6 24.1 261 4-281 157-419 (419)
6 PRK07233 hypothetical protein; 100.0 5.6E-26 1.2E-30 209.7 25.6 269 3-284 156-432 (434)
7 PLN02676 polyamine oxidase 99.9 1.1E-24 2.5E-29 202.5 18.1 266 6-286 189-476 (487)
8 TIGR02733 desat_CrtD C-3',4' d 99.9 6.4E-24 1.4E-28 199.0 22.9 260 7-282 200-491 (492)
9 PLN02976 amine oxidase 99.9 2.9E-24 6.2E-29 211.9 18.5 245 33-288 927-1191(1713)
10 PLN03000 amine oxidase 99.9 1.6E-23 3.4E-28 201.3 18.3 242 33-289 372-629 (881)
11 COG1231 Monoamine oxidase [Ami 99.9 9.2E-23 2E-27 180.6 20.2 238 34-284 201-448 (450)
12 TIGR02734 crtI_fam phytoene de 99.9 3E-22 6.4E-27 188.3 23.8 263 7-287 189-496 (502)
13 PLN02568 polyamine oxidase 99.9 9.6E-23 2.1E-27 191.1 20.0 243 34-284 234-536 (539)
14 PF01593 Amino_oxidase: Flavin 99.9 2.2E-23 4.9E-28 191.4 13.5 236 34-280 204-450 (450)
15 PLN02529 lysine-specific histo 99.9 2.4E-22 5.2E-27 192.4 20.0 239 32-285 347-600 (738)
16 PLN02328 lysine-specific histo 99.9 2.2E-22 4.7E-27 193.5 19.2 240 33-287 428-683 (808)
17 PLN02268 probable polyamine ox 99.9 1.3E-22 2.8E-27 187.5 16.9 230 35-283 194-434 (435)
18 TIGR00562 proto_IX_ox protopor 99.9 3.4E-22 7.3E-27 186.1 19.8 232 34-283 217-460 (462)
19 TIGR02730 carot_isom carotene 99.9 2.5E-21 5.3E-26 181.5 25.0 260 9-283 200-492 (493)
20 PRK12416 protoporphyrinogen ox 99.9 5.3E-22 1.1E-26 184.8 20.2 259 4-283 171-461 (463)
21 PRK11883 protoporphyrinogen ox 99.9 6.7E-22 1.5E-26 183.5 20.1 257 4-281 166-450 (451)
22 PRK07208 hypothetical protein; 99.9 3.5E-21 7.6E-26 180.0 22.2 270 4-283 158-461 (479)
23 PLN02576 protoporphyrinogen ox 99.9 1.1E-21 2.4E-26 184.2 18.8 242 33-291 230-494 (496)
24 COG3349 Uncharacterized conser 99.8 1.5E-20 3.2E-25 169.5 12.4 281 1-288 172-468 (485)
25 COG1232 HemY Protoporphyrinoge 99.8 2.1E-19 4.5E-24 162.6 17.4 256 4-280 160-443 (444)
26 KOG0029 Amine oxidase [Seconda 99.8 2.1E-19 4.5E-24 166.1 17.7 236 34-285 211-461 (501)
27 KOG4254 Phytoene desaturase [C 99.8 1.1E-18 2.3E-23 153.4 20.2 243 31-289 253-552 (561)
28 KOG0685 Flavin-containing amin 99.8 2.5E-19 5.5E-24 158.9 15.0 247 33-286 214-494 (498)
29 COG3380 Predicted NAD/FAD-depe 99.7 3.1E-17 6.6E-22 135.7 7.0 218 46-282 107-330 (331)
30 COG1233 Phytoene dehydrogenase 99.7 1.5E-15 3.3E-20 141.7 16.3 238 30-283 212-483 (487)
31 KOG1276 Protoporphyrinogen oxi 99.1 8.4E-10 1.8E-14 97.4 11.8 231 33-280 240-490 (491)
32 PTZ00363 rab-GDP dissociation 98.5 1.2E-06 2.5E-11 80.9 10.4 66 32-98 222-287 (443)
33 TIGR02352 thiamin_ThiO glycine 98.4 5.4E-05 1.2E-09 67.4 19.0 68 33-102 125-194 (337)
34 PF01266 DAO: FAD dependent ox 98.3 4.6E-06 1E-10 74.6 10.7 67 33-101 135-203 (358)
35 COG2907 Predicted NAD/FAD-bind 98.2 4.3E-06 9.4E-11 72.6 7.2 92 33-132 210-302 (447)
36 TIGR01373 soxB sarcosine oxida 98.1 0.00054 1.2E-08 62.9 19.8 198 44-282 184-385 (407)
37 PRK00711 D-amino acid dehydrog 98.1 0.00062 1.4E-08 62.6 20.1 66 34-101 190-257 (416)
38 PRK13977 myosin-cross-reactive 97.9 6.7E-05 1.4E-09 70.7 9.4 96 6-101 185-293 (576)
39 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.0018 3.9E-08 58.9 17.6 66 33-101 123-190 (381)
40 PF03486 HI0933_like: HI0933-l 97.6 0.0016 3.4E-08 59.7 14.1 67 32-99 98-164 (409)
41 COG2081 Predicted flavoprotein 97.6 0.00031 6.8E-09 62.6 8.2 66 30-98 98-164 (408)
42 PRK08773 2-octaprenyl-3-methyl 97.6 0.0027 5.9E-08 57.9 14.8 56 44-101 114-169 (392)
43 PRK11259 solA N-methyltryptoph 97.5 0.022 4.8E-07 51.5 20.0 66 33-101 137-204 (376)
44 COG0644 FixC Dehydrogenases (f 97.5 0.01 2.2E-07 54.4 17.7 54 46-100 98-151 (396)
45 TIGR03329 Phn_aa_oxid putative 97.5 0.0052 1.1E-07 57.4 15.8 64 34-101 172-237 (460)
46 TIGR01377 soxA_mon sarcosine o 97.5 0.027 6E-07 51.0 20.0 66 33-101 133-200 (380)
47 TIGR02032 GG-red-SF geranylger 97.4 0.023 4.9E-07 49.3 18.0 55 44-100 92-147 (295)
48 PRK01747 mnmC bifunctional tRN 97.4 0.013 2.8E-07 57.4 17.9 66 33-101 396-463 (662)
49 COG2509 Uncharacterized FAD-de 97.4 0.00053 1.2E-08 62.0 7.3 55 44-99 174-228 (486)
50 PRK06847 hypothetical protein; 97.4 0.0087 1.9E-07 54.2 15.5 55 44-100 108-162 (375)
51 PRK10015 oxidoreductase; Provi 97.4 0.03 6.5E-07 51.9 19.0 51 48-100 113-163 (429)
52 PRK12409 D-amino acid dehydrog 97.4 0.029 6.3E-07 51.5 18.8 67 33-101 185-258 (410)
53 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.029 6.3E-07 50.9 18.6 56 44-101 106-162 (382)
54 PRK07333 2-octaprenyl-6-methox 97.3 0.033 7.1E-07 50.9 18.4 55 44-100 112-166 (403)
55 COG0579 Predicted dehydrogenas 97.3 0.0012 2.6E-08 60.3 8.1 67 34-101 142-211 (429)
56 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.039 8.5E-07 50.0 18.1 55 44-100 107-162 (385)
57 PRK10157 putative oxidoreducta 97.2 0.017 3.7E-07 53.5 15.0 52 47-100 112-163 (428)
58 PRK07045 putative monooxygenas 97.1 0.032 7E-07 50.8 16.4 57 45-101 108-165 (388)
59 PRK05714 2-octaprenyl-3-methyl 97.0 0.13 2.7E-06 47.2 19.2 61 44-106 113-174 (405)
60 PRK07494 2-octaprenyl-6-methox 97.0 0.021 4.5E-07 52.0 13.9 55 44-100 112-166 (388)
61 PRK08020 ubiF 2-octaprenyl-3-m 97.0 0.081 1.7E-06 48.2 17.3 55 45-101 114-169 (391)
62 TIGR01790 carotene-cycl lycope 96.9 0.31 6.7E-06 44.3 20.9 57 43-101 85-141 (388)
63 TIGR02485 CobZ_N-term precorri 96.9 0.0041 8.9E-08 57.6 8.3 63 36-99 117-181 (432)
64 TIGR03378 glycerol3P_GlpB glyc 96.9 0.0036 7.7E-08 57.2 7.2 63 43-106 263-327 (419)
65 PRK06185 hypothetical protein; 96.8 0.11 2.4E-06 47.6 16.9 62 44-106 109-175 (407)
66 PRK08244 hypothetical protein; 96.7 0.17 3.8E-06 47.7 18.1 54 45-100 102-158 (493)
67 PF00996 GDI: GDP dissociation 96.7 0.012 2.6E-07 54.2 9.8 81 14-96 201-284 (438)
68 COG0665 DadA Glycine/D-amino a 96.7 0.19 4.2E-06 45.5 17.5 66 33-101 144-212 (387)
69 PRK09126 hypothetical protein; 96.7 0.15 3.2E-06 46.5 16.5 54 45-100 112-166 (392)
70 TIGR03862 flavo_PP4765 unchara 96.6 0.013 2.9E-07 52.9 9.0 65 31-99 74-139 (376)
71 PRK08850 2-octaprenyl-6-methox 96.6 0.22 4.8E-06 45.7 17.3 54 45-100 113-167 (405)
72 COG0654 UbiH 2-polyprenyl-6-me 96.6 0.14 3E-06 46.7 15.8 56 43-100 104-161 (387)
73 PLN02463 lycopene beta cyclase 96.6 0.64 1.4E-05 43.3 20.1 54 44-100 115-168 (447)
74 PRK07364 2-octaprenyl-6-methox 96.5 0.14 3E-06 47.1 15.4 55 44-100 122-180 (415)
75 PF13738 Pyr_redox_3: Pyridine 96.5 0.0046 1E-07 50.7 5.1 55 43-99 82-136 (203)
76 PRK11728 hydroxyglutarate oxid 96.3 0.013 2.8E-07 53.6 7.4 66 33-101 137-204 (393)
77 TIGR01320 mal_quin_oxido malat 96.3 0.015 3.2E-07 54.8 7.6 68 33-101 166-240 (483)
78 PRK05257 malate:quinone oxidor 96.3 0.017 3.7E-07 54.4 8.0 58 43-101 183-246 (494)
79 PRK06996 hypothetical protein; 96.2 0.43 9.3E-06 43.7 17.0 53 44-98 116-171 (398)
80 PF00070 Pyr_redox: Pyridine n 96.2 0.015 3.3E-07 40.1 5.7 42 42-85 39-80 (80)
81 TIGR03377 glycerol3P_GlpA glyc 96.1 0.016 3.6E-07 55.0 7.3 68 33-101 117-190 (516)
82 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.7 1.5E-05 44.2 18.3 58 47-106 117-180 (538)
83 PRK08849 2-octaprenyl-3-methyl 96.1 0.44 9.6E-06 43.3 16.4 52 48-101 115-167 (384)
84 PRK11101 glpA sn-glycerol-3-ph 96.1 0.019 4.1E-07 54.9 7.6 68 33-101 138-211 (546)
85 PF07156 Prenylcys_lyase: Pren 96.1 0.011 2.4E-07 53.3 5.6 67 32-103 118-189 (368)
86 PRK08274 tricarballylate dehyd 96.0 0.025 5.4E-07 52.9 7.9 56 43-99 131-190 (466)
87 PF00890 FAD_binding_2: FAD bi 96.0 0.02 4.3E-07 52.7 7.1 56 43-99 141-201 (417)
88 PRK07121 hypothetical protein; 96.0 0.025 5.5E-07 53.3 7.9 57 43-99 177-237 (492)
89 PRK05732 2-octaprenyl-6-methox 96.0 0.79 1.7E-05 41.7 17.6 52 47-100 116-168 (395)
90 PRK08243 4-hydroxybenzoate 3-m 96.0 1.2 2.5E-05 40.7 18.6 61 45-106 105-169 (392)
91 PTZ00383 malate:quinone oxidor 96.0 0.029 6.2E-07 52.9 8.0 58 43-102 211-274 (497)
92 PRK12845 3-ketosteroid-delta-1 96.0 0.024 5.2E-07 54.4 7.5 61 36-99 212-276 (564)
93 PRK13339 malate:quinone oxidor 95.9 0.042 9.1E-07 51.7 8.8 68 33-101 172-247 (497)
94 PF01494 FAD_binding_3: FAD bi 95.9 0.3 6.6E-06 43.3 14.1 56 44-101 112-172 (356)
95 PRK06116 glutathione reductase 95.8 0.03 6.6E-07 52.2 7.3 56 43-99 208-263 (450)
96 PRK06617 2-octaprenyl-6-methox 95.7 1.6 3.4E-05 39.6 18.7 54 44-100 105-159 (374)
97 PRK05329 anaerobic glycerol-3- 95.7 0.042 9E-07 50.7 7.6 55 44-99 260-316 (422)
98 PF06039 Mqo: Malate:quinone o 95.7 0.044 9.4E-07 50.3 7.4 59 43-102 181-245 (488)
99 KOG1336 Monodehydroascorbate/f 95.7 0.028 6.2E-07 51.4 6.2 64 42-105 254-317 (478)
100 PRK12835 3-ketosteroid-delta-1 95.6 0.041 9E-07 53.0 7.7 57 43-99 213-273 (584)
101 PF06100 Strep_67kDa_ant: Stre 95.6 0.092 2E-06 48.7 9.4 89 10-99 170-272 (500)
102 TIGR01813 flavo_cyto_c flavocy 95.5 0.042 9.1E-07 51.0 7.3 57 43-99 130-190 (439)
103 TIGR01989 COQ6 Ubiquinone bios 95.5 1.2 2.6E-05 41.3 16.8 55 45-100 119-182 (437)
104 TIGR00275 flavoprotein, HI0933 95.5 0.067 1.4E-06 49.1 8.3 62 35-99 97-158 (400)
105 KOG2820 FAD-dependent oxidored 95.3 0.059 1.3E-06 47.3 6.8 69 39-108 147-218 (399)
106 PRK06134 putative FAD-binding 95.3 0.053 1.2E-06 52.3 7.2 57 43-100 217-277 (581)
107 PRK06481 fumarate reductase fl 95.2 0.071 1.5E-06 50.5 7.6 54 44-98 191-248 (506)
108 PRK05675 sdhA succinate dehydr 95.2 0.095 2.1E-06 50.4 8.5 58 43-100 126-188 (570)
109 PRK09078 sdhA succinate dehydr 95.2 0.095 2.1E-06 50.7 8.5 58 43-100 149-211 (598)
110 PLN02464 glycerol-3-phosphate 95.1 0.081 1.8E-06 51.5 7.9 60 42-101 231-296 (627)
111 PRK12843 putative FAD-binding 95.1 0.076 1.6E-06 51.2 7.6 56 43-99 221-280 (578)
112 TIGR03364 HpnW_proposed FAD de 95.0 0.072 1.6E-06 48.0 6.9 61 34-101 134-197 (365)
113 PRK06175 L-aspartate oxidase; 95.0 0.13 2.8E-06 47.7 8.5 56 43-99 128-187 (433)
114 TIGR01816 sdhA_forward succina 94.9 0.12 2.5E-06 49.8 8.4 57 43-100 119-180 (565)
115 PRK04176 ribulose-1,5-biphosph 94.9 0.1 2.2E-06 44.8 7.1 57 43-99 104-171 (257)
116 PF01134 GIDA: Glucose inhibit 94.9 0.1 2.2E-06 47.3 7.2 52 46-99 98-150 (392)
117 PLN02697 lycopene epsilon cycl 94.8 3.9 8.5E-05 39.0 22.2 56 44-101 193-248 (529)
118 COG1252 Ndh NADH dehydrogenase 94.8 0.069 1.5E-06 48.7 5.9 52 42-99 208-260 (405)
119 PRK05249 soluble pyridine nucl 94.7 0.11 2.4E-06 48.6 7.5 56 43-100 216-271 (461)
120 TIGR01423 trypano_reduc trypan 94.7 0.11 2.5E-06 48.9 7.5 56 43-99 231-286 (486)
121 TIGR01811 sdhA_Bsu succinate d 94.7 0.16 3.4E-06 49.3 8.6 57 43-99 129-194 (603)
122 PRK12844 3-ketosteroid-delta-1 94.7 0.11 2.3E-06 49.9 7.4 56 43-99 208-267 (557)
123 PRK12839 hypothetical protein; 94.7 0.12 2.6E-06 49.8 7.6 57 43-99 214-274 (572)
124 PRK12842 putative succinate de 94.6 0.094 2E-06 50.5 6.9 56 43-99 214-273 (574)
125 PF13454 NAD_binding_9: FAD-NA 94.6 0.14 2.9E-06 40.4 6.7 42 56-99 113-155 (156)
126 PRK14989 nitrite reductase sub 94.6 0.13 2.7E-06 51.9 7.8 54 46-99 190-243 (847)
127 PRK04965 NADH:flavorubredoxin 94.5 0.14 3.1E-06 46.4 7.6 54 44-99 184-237 (377)
128 PRK08958 sdhA succinate dehydr 94.5 0.17 3.8E-06 48.9 8.4 58 43-100 143-205 (588)
129 PF05834 Lycopene_cycl: Lycope 94.5 3.6 7.9E-05 37.3 19.8 55 43-100 87-141 (374)
130 PRK06834 hypothetical protein; 94.4 0.13 2.8E-06 48.6 7.2 54 45-100 102-155 (488)
131 TIGR01424 gluta_reduc_2 glutat 94.4 0.14 3.1E-06 47.7 7.4 55 43-99 207-261 (446)
132 PRK07573 sdhA succinate dehydr 94.4 0.16 3.4E-06 49.7 7.8 52 47-99 174-230 (640)
133 PLN02507 glutathione reductase 94.4 0.15 3.3E-06 48.2 7.5 55 43-99 244-298 (499)
134 TIGR01421 gluta_reduc_1 glutat 94.3 0.15 3.3E-06 47.5 7.4 57 43-100 207-264 (450)
135 PRK06416 dihydrolipoamide dehy 94.3 0.15 3.3E-06 47.6 7.5 55 44-100 214-271 (462)
136 PRK07843 3-ketosteroid-delta-1 94.3 0.15 3.3E-06 48.9 7.4 56 43-99 208-267 (557)
137 PRK08275 putative oxidoreducta 94.2 0.16 3.5E-06 48.7 7.5 58 43-100 137-199 (554)
138 PRK07190 hypothetical protein; 94.2 0.17 3.7E-06 47.7 7.5 53 47-101 113-165 (487)
139 PRK08205 sdhA succinate dehydr 94.2 0.19 4.2E-06 48.5 8.0 58 43-100 140-205 (583)
140 PRK09754 phenylpropionate diox 94.2 0.19 4.1E-06 46.0 7.5 52 45-99 188-239 (396)
141 PRK06263 sdhA succinate dehydr 94.2 0.2 4.4E-06 47.9 8.0 58 43-100 134-196 (543)
142 PRK07588 hypothetical protein; 94.1 0.14 3E-06 46.7 6.5 53 45-100 105-157 (391)
143 PTZ00139 Succinate dehydrogena 94.1 0.17 3.8E-06 49.1 7.4 57 43-99 166-227 (617)
144 TIGR01350 lipoamide_DH dihydro 94.0 0.21 4.5E-06 46.7 7.7 55 43-99 211-267 (461)
145 TIGR00292 thiazole biosynthesi 94.0 0.26 5.6E-06 42.2 7.6 57 43-99 100-168 (254)
146 PRK06452 sdhA succinate dehydr 94.0 0.19 4.1E-06 48.4 7.4 57 43-100 136-197 (566)
147 PRK07845 flavoprotein disulfid 93.9 0.19 4.1E-06 47.1 7.2 54 44-99 219-272 (466)
148 KOG1335 Dihydrolipoamide dehyd 93.9 0.22 4.9E-06 44.6 6.9 61 38-99 247-312 (506)
149 COG1249 Lpd Pyruvate/2-oxoglut 93.9 0.2 4.4E-06 46.6 7.1 55 43-99 214-270 (454)
150 TIGR02374 nitri_red_nirB nitri 93.8 0.21 4.5E-06 50.0 7.7 52 46-99 185-236 (785)
151 PRK12266 glpD glycerol-3-phosp 93.8 0.25 5.5E-06 46.8 7.9 66 34-101 145-216 (508)
152 KOG1439 RAB proteins geranylge 93.8 0.42 9.2E-06 43.0 8.6 65 30-96 220-284 (440)
153 PRK07057 sdhA succinate dehydr 93.8 0.34 7.3E-06 46.9 8.7 57 43-99 148-209 (591)
154 PRK05945 sdhA succinate dehydr 93.7 0.3 6.6E-06 47.1 8.4 57 43-100 135-196 (575)
155 TIGR01812 sdhA_frdA_Gneg succi 93.7 0.24 5.2E-06 47.7 7.6 57 43-100 129-190 (566)
156 PRK11445 putative oxidoreducta 93.6 5.2 0.00011 35.9 19.7 45 55-101 110-157 (351)
157 PTZ00318 NADH dehydrogenase-li 93.6 0.18 3.9E-06 46.7 6.4 51 43-99 228-278 (424)
158 PRK05976 dihydrolipoamide dehy 93.6 0.3 6.6E-06 45.8 8.0 57 44-100 222-280 (472)
159 PRK12837 3-ketosteroid-delta-1 93.6 0.24 5.3E-06 47.0 7.4 56 43-99 173-233 (513)
160 PF04820 Trp_halogenase: Trypt 93.6 0.23 4.9E-06 46.4 7.0 57 44-101 155-211 (454)
161 PRK07804 L-aspartate oxidase; 93.6 0.24 5.3E-06 47.3 7.3 58 43-100 144-209 (541)
162 PLN00093 geranylgeranyl diphos 93.5 6.6 0.00014 36.7 21.6 38 247-284 308-348 (450)
163 PRK08163 salicylate hydroxylas 93.5 0.27 5.8E-06 44.9 7.2 55 45-101 111-166 (396)
164 PRK06184 hypothetical protein; 93.4 0.27 5.9E-06 46.5 7.4 54 46-101 112-168 (502)
165 PLN00128 Succinate dehydrogena 93.4 0.27 5.8E-06 48.0 7.5 57 43-99 187-248 (635)
166 TIGR01292 TRX_reduct thioredox 93.4 0.34 7.3E-06 42.1 7.5 54 44-100 58-111 (300)
167 PRK08401 L-aspartate oxidase; 93.4 0.28 6E-06 46.0 7.3 56 43-101 120-175 (466)
168 PRK07512 L-aspartate oxidase; 93.3 0.19 4E-06 47.8 6.1 57 43-100 136-196 (513)
169 TIGR02023 BchP-ChlP geranylger 93.3 6.2 0.00013 35.9 20.3 37 248-284 264-303 (388)
170 TIGR03385 CoA_CoA_reduc CoA-di 93.1 0.33 7.1E-06 44.9 7.3 53 44-100 180-232 (427)
171 TIGR00031 UDP-GALP_mutase UDP- 93.1 0.053 1.2E-06 49.2 1.9 87 5-102 158-248 (377)
172 PRK08013 oxidoreductase; Provi 93.0 0.29 6.3E-06 44.8 6.8 54 45-100 113-167 (400)
173 PRK07818 dihydrolipoamide dehy 93.0 0.4 8.6E-06 44.9 7.7 55 43-99 213-271 (466)
174 PRK07395 L-aspartate oxidase; 93.0 0.21 4.6E-06 47.9 6.0 57 43-99 134-195 (553)
175 TIGR00551 nadB L-aspartate oxi 93.0 0.35 7.6E-06 45.6 7.3 58 43-101 128-189 (488)
176 PTZ00058 glutathione reductase 92.8 0.45 9.7E-06 45.7 7.9 55 44-99 279-334 (561)
177 PRK07608 ubiquinone biosynthes 92.8 0.33 7.1E-06 44.1 6.7 54 44-100 112-166 (388)
178 PRK06327 dihydrolipoamide dehy 92.8 0.42 9.2E-06 44.9 7.6 55 43-99 224-282 (475)
179 PRK08626 fumarate reductase fl 92.8 0.5 1.1E-05 46.3 8.2 56 43-99 158-218 (657)
180 TIGR03140 AhpF alkyl hydropero 92.7 0.42 9.1E-06 45.4 7.5 56 43-100 267-322 (515)
181 PRK13369 glycerol-3-phosphate 92.7 0.45 9.8E-06 45.1 7.7 57 43-101 155-215 (502)
182 TIGR03169 Nterm_to_SelD pyridi 92.7 0.33 7.1E-06 43.8 6.5 50 44-99 192-241 (364)
183 PRK08294 phenol 2-monooxygenas 92.6 11 0.00024 36.9 20.7 61 45-106 143-216 (634)
184 PRK08010 pyridine nucleotide-d 92.5 0.42 9.2E-06 44.4 7.2 53 44-99 200-252 (441)
185 KOG2844 Dimethylglycine dehydr 92.5 0.27 5.8E-06 47.1 5.6 67 33-101 175-243 (856)
186 PRK09564 coenzyme A disulfide 92.5 0.48 1E-05 44.0 7.4 54 43-99 191-244 (444)
187 PTZ00052 thioredoxin reductase 92.4 0.47 1E-05 44.9 7.4 55 44-100 223-277 (499)
188 PRK09897 hypothetical protein; 92.3 0.45 9.8E-06 45.3 7.1 63 35-99 96-164 (534)
189 PRK06370 mercuric reductase; V 92.3 0.53 1.2E-05 44.1 7.6 54 44-99 213-269 (463)
190 PRK07251 pyridine nucleotide-d 92.3 0.49 1.1E-05 43.9 7.3 53 44-99 199-251 (438)
191 COG0578 GlpA Glycerol-3-phosph 92.3 0.43 9.4E-06 45.0 6.8 68 33-102 153-226 (532)
192 PRK15317 alkyl hydroperoxide r 92.2 0.53 1.1E-05 44.8 7.5 56 43-100 266-321 (517)
193 PRK08071 L-aspartate oxidase; 92.0 0.4 8.7E-06 45.5 6.4 54 44-99 131-188 (510)
194 TIGR03219 salicylate_mono sali 92.0 0.38 8.2E-06 44.3 6.1 53 45-101 107-159 (414)
195 PRK10262 thioredoxin reductase 92.0 0.46 9.9E-06 42.1 6.4 54 45-99 187-246 (321)
196 PRK06854 adenylylsulfate reduc 92.0 0.54 1.2E-05 45.7 7.3 57 43-100 132-194 (608)
197 PRK05868 hypothetical protein; 91.8 0.5 1.1E-05 42.9 6.6 43 56-100 117-159 (372)
198 TIGR01316 gltA glutamate synth 91.8 0.69 1.5E-05 43.1 7.7 34 49-82 315-348 (449)
199 PRK06115 dihydrolipoamide dehy 91.7 0.72 1.6E-05 43.3 7.6 55 44-100 216-275 (466)
200 TIGR02028 ChlP geranylgeranyl 91.6 11 0.00023 34.6 20.3 38 247-284 269-309 (398)
201 PRK12834 putative FAD-binding 91.6 0.58 1.3E-05 44.9 7.1 56 43-99 148-225 (549)
202 TIGR00136 gidA glucose-inhibit 91.6 0.72 1.6E-05 44.4 7.5 56 45-101 98-154 (617)
203 PRK07236 hypothetical protein; 91.6 0.5 1.1E-05 43.0 6.4 51 45-99 102-152 (386)
204 PRK14727 putative mercuric red 91.6 0.65 1.4E-05 43.7 7.3 54 44-100 229-282 (479)
205 PLN02546 glutathione reductase 91.6 0.68 1.5E-05 44.5 7.4 57 43-100 293-349 (558)
206 TIGR01438 TGR thioredoxin and 91.5 0.71 1.5E-05 43.5 7.4 55 43-99 220-277 (484)
207 PRK14694 putative mercuric red 91.5 0.7 1.5E-05 43.3 7.4 55 43-100 218-272 (468)
208 PRK13512 coenzyme A disulfide 91.1 0.71 1.5E-05 42.9 7.0 51 43-99 189-239 (438)
209 TIGR02053 MerA mercuric reduct 91.1 0.79 1.7E-05 42.9 7.3 54 44-99 208-264 (463)
210 PRK06069 sdhA succinate dehydr 90.9 0.76 1.6E-05 44.4 7.2 57 43-100 137-199 (577)
211 PRK05192 tRNA uridine 5-carbox 90.8 0.82 1.8E-05 44.1 7.1 55 45-101 102-157 (618)
212 PTZ00306 NADH-dependent fumara 90.8 0.77 1.7E-05 48.1 7.5 56 44-99 545-618 (1167)
213 PLN02172 flavin-containing mon 90.7 0.81 1.7E-05 42.9 6.9 56 43-100 111-172 (461)
214 PRK06753 hypothetical protein; 90.7 0.69 1.5E-05 41.7 6.4 53 45-101 100-152 (373)
215 PRK07846 mycothione reductase; 90.7 0.93 2E-05 42.3 7.3 44 55-100 218-261 (451)
216 PRK06912 acoL dihydrolipoamide 90.4 1.1 2.4E-05 41.9 7.6 53 44-99 212-266 (458)
217 PRK13748 putative mercuric red 90.4 0.96 2.1E-05 43.4 7.4 54 43-99 310-363 (561)
218 PRK07803 sdhA succinate dehydr 90.1 0.99 2.2E-05 44.0 7.2 56 43-99 138-211 (626)
219 PLN02815 L-aspartate oxidase 90.0 0.86 1.9E-05 44.1 6.6 57 43-99 155-220 (594)
220 COG1251 NirB NAD(P)H-nitrite r 89.8 0.35 7.6E-06 46.9 3.7 50 48-99 192-241 (793)
221 PF00732 GMC_oxred_N: GMC oxid 89.7 0.79 1.7E-05 39.9 5.7 58 48-105 198-262 (296)
222 TIGR03452 mycothione_red mycot 89.4 1.6 3.4E-05 40.8 7.7 53 45-100 212-264 (452)
223 PRK08641 sdhA succinate dehydr 89.2 1.3 2.8E-05 42.9 7.2 58 43-100 133-199 (589)
224 PRK12831 putative oxidoreducta 89.2 1.5 3.2E-05 41.2 7.4 38 245-284 424-461 (464)
225 PF13434 K_oxygenase: L-lysine 89.1 0.61 1.3E-05 41.8 4.6 60 39-99 269-339 (341)
226 TIGR01810 betA choline dehydro 88.8 0.78 1.7E-05 43.8 5.4 44 55-99 206-253 (532)
227 PRK09231 fumarate reductase fl 88.7 1.4 3E-05 42.6 7.1 56 43-99 133-194 (582)
228 PRK09077 L-aspartate oxidase; 88.7 2 4.3E-05 41.1 8.0 58 43-100 138-206 (536)
229 PRK12769 putative oxidoreducta 88.6 1.6 3.5E-05 42.8 7.6 38 245-284 615-652 (654)
230 TIGR01176 fum_red_Fp fumarate 88.6 2.2 4.8E-05 41.2 8.3 56 43-99 132-193 (580)
231 PRK06475 salicylate hydroxylas 88.5 1.8 3.8E-05 39.6 7.3 56 44-101 108-167 (400)
232 TIGR01318 gltD_gamma_fam gluta 88.2 1.9 4.1E-05 40.5 7.4 38 245-284 429-466 (467)
233 PRK12810 gltD glutamate syntha 88.0 1.8 3.8E-05 40.7 7.1 48 50-98 336-397 (471)
234 COG0446 HcaD Uncharacterized N 87.8 1.9 4.2E-05 39.1 7.1 55 44-99 179-235 (415)
235 PRK08132 FAD-dependent oxidore 87.8 1.9 4.1E-05 41.3 7.3 58 47-106 129-191 (547)
236 TIGR02374 nitri_red_nirB nitri 87.7 0.86 1.9E-05 45.7 5.1 47 50-100 61-107 (785)
237 TIGR01372 soxA sarcosine oxida 87.7 3.7 8.1E-05 42.4 9.7 62 34-99 344-409 (985)
238 TIGR03140 AhpF alkyl hydropero 87.2 2.2 4.7E-05 40.6 7.2 50 49-99 393-448 (515)
239 TIGR02462 pyranose_ox pyranose 87.0 1.7 3.8E-05 41.4 6.4 51 55-105 226-283 (544)
240 PRK11749 dihydropyrimidine deh 87.0 2.6 5.5E-05 39.4 7.5 50 48-98 316-384 (457)
241 PF12831 FAD_oxidored: FAD dep 86.9 0.19 4.2E-06 46.5 0.0 56 50-106 97-155 (428)
242 PRK09754 phenylpropionate diox 86.8 1.8 3.9E-05 39.6 6.3 45 52-100 67-111 (396)
243 TIGR02061 aprA adenosine phosp 86.8 2.8 6E-05 40.8 7.8 58 43-100 126-190 (614)
244 TIGR01292 TRX_reduct thioredox 86.8 2.6 5.7E-05 36.4 7.1 53 45-99 178-236 (300)
245 COG2509 Uncharacterized FAD-de 86.7 2.6 5.6E-05 38.9 6.9 40 243-284 445-484 (486)
246 TIGR03169 Nterm_to_SelD pyridi 86.1 1.2 2.5E-05 40.2 4.6 52 45-101 56-107 (364)
247 TIGR02360 pbenz_hydroxyl 4-hyd 85.4 3.3 7.2E-05 37.8 7.3 63 44-107 104-170 (390)
248 PRK06126 hypothetical protein; 84.5 3.4 7.4E-05 39.5 7.2 54 46-101 129-188 (545)
249 PRK06292 dihydrolipoamide dehy 84.2 4 8.7E-05 38.1 7.4 54 44-99 211-266 (460)
250 PRK14989 nitrite reductase sub 84.1 1.7 3.7E-05 43.9 5.2 47 50-100 66-112 (847)
251 COG0492 TrxB Thioredoxin reduc 83.5 4.4 9.4E-05 35.8 6.8 55 43-101 61-115 (305)
252 KOG2404 Fumarate reductase, fl 82.9 2.3 5E-05 37.5 4.7 55 44-99 140-204 (477)
253 PRK09564 coenzyme A disulfide 82.9 2.3 4.9E-05 39.5 5.1 49 50-100 63-114 (444)
254 PRK07538 hypothetical protein; 82.8 3.7 8E-05 37.7 6.5 54 46-101 105-165 (413)
255 COG0445 GidA Flavin-dependent 82.2 1.4 3.1E-05 41.5 3.4 56 49-105 106-162 (621)
256 PLN02661 Putative thiazole syn 82.0 6.6 0.00014 35.3 7.4 55 43-98 172-241 (357)
257 PF07992 Pyr_redox_2: Pyridine 81.9 2 4.4E-05 34.7 4.0 51 48-99 63-120 (201)
258 PRK04965 NADH:flavorubredoxin 81.8 4.4 9.6E-05 36.7 6.5 45 51-100 66-110 (377)
259 COG2072 TrkA Predicted flavopr 81.4 6 0.00013 36.9 7.3 55 45-99 84-142 (443)
260 COG3075 GlpB Anaerobic glycero 81.1 3 6.5E-05 36.9 4.8 61 44-105 259-321 (421)
261 PRK12778 putative bifunctional 81.0 5 0.00011 40.2 7.0 37 245-283 713-749 (752)
262 PLN02985 squalene monooxygenas 80.6 54 0.0012 31.3 16.2 55 44-100 148-207 (514)
263 PRK15317 alkyl hydroperoxide r 80.5 6.1 0.00013 37.6 7.2 52 47-99 390-447 (517)
264 KOG1346 Programmed cell death 80.5 1.7 3.8E-05 39.5 3.2 67 38-106 384-454 (659)
265 PRK02106 choline dehydrogenase 80.3 2.4 5.2E-05 40.8 4.4 44 55-99 213-260 (560)
266 PLN02927 antheraxanthin epoxid 80.2 4.7 0.0001 39.6 6.3 41 59-101 208-248 (668)
267 PRK12809 putative oxidoreducta 80.0 6.2 0.00013 38.7 7.2 38 245-284 598-635 (639)
268 PRK06467 dihydrolipoamide dehy 79.8 6.1 0.00013 37.1 6.9 53 44-99 216-272 (471)
269 PTZ00153 lipoamide dehydrogena 79.7 7 0.00015 38.4 7.4 56 45-100 355-426 (659)
270 PRK12770 putative glutamate sy 79.4 6 0.00013 35.5 6.5 51 47-99 214-284 (352)
271 PF00743 FMO-like: Flavin-bind 78.3 4.9 0.00011 38.4 5.7 57 43-100 84-149 (531)
272 PRK12769 putative oxidoreducta 78.0 3.2 7E-05 40.8 4.6 47 45-102 379-425 (654)
273 TIGR01318 gltD_gamma_fam gluta 77.9 3.9 8.5E-05 38.4 5.0 48 44-102 192-239 (467)
274 TIGR03385 CoA_CoA_reduc CoA-di 77.3 7.1 0.00015 36.0 6.5 45 53-99 54-101 (427)
275 TIGR01316 gltA glutamate synth 77.3 3.6 7.7E-05 38.4 4.5 38 243-282 411-448 (449)
276 PRK12831 putative oxidoreducta 77.1 3.7 8E-05 38.5 4.5 46 45-100 193-239 (464)
277 KOG0405 Pyridine nucleotide-di 76.9 5.7 0.00012 35.5 5.2 59 40-99 227-285 (478)
278 PRK12775 putative trifunctiona 75.9 8.2 0.00018 40.0 7.0 49 51-99 617-684 (1006)
279 KOG1336 Monodehydroascorbate/f 75.9 4.6 0.0001 37.4 4.6 45 51-99 135-179 (478)
280 PRK12810 gltD glutamate syntha 75.7 4.9 0.00011 37.8 5.0 40 243-284 426-465 (471)
281 COG1251 NirB NAD(P)H-nitrite r 75.0 4.9 0.00011 39.4 4.7 53 43-99 59-111 (793)
282 PRK13800 putative oxidoreducta 74.8 11 0.00024 38.6 7.5 56 43-99 139-203 (897)
283 PRK12771 putative glutamate sy 72.9 13 0.00029 35.8 7.3 46 53-99 315-378 (564)
284 KOG0404 Thioredoxin reductase 72.9 7.8 0.00017 32.5 4.8 63 35-101 62-124 (322)
285 PRK13984 putative oxidoreducta 72.1 11 0.00024 36.6 6.6 36 245-283 566-601 (604)
286 PRK12775 putative trifunctiona 72.0 6.1 0.00013 40.9 4.9 42 243-286 716-757 (1006)
287 PRK12844 3-ketosteroid-delta-1 71.4 4.8 0.0001 38.7 3.9 45 244-288 504-555 (557)
288 PRK13984 putative oxidoreducta 70.1 6.9 0.00015 38.0 4.7 46 44-100 334-379 (604)
289 TIGR01816 sdhA_forward succina 70.0 6.5 0.00014 37.9 4.4 39 245-283 351-396 (565)
290 TIGR01789 lycopene_cycl lycope 69.8 8 0.00017 35.1 4.8 45 47-100 93-137 (370)
291 TIGR03862 flavo_PP4765 unchara 69.8 6.2 0.00014 35.9 4.0 38 246-283 335-375 (376)
292 PRK13512 coenzyme A disulfide 69.4 11 0.00024 35.0 5.7 45 54-100 69-116 (438)
293 PF01134 GIDA: Glucose inhibit 69.4 6.8 0.00015 35.8 4.1 76 195-283 312-388 (392)
294 PRK11749 dihydropyrimidine deh 69.3 7.6 0.00016 36.3 4.6 40 243-284 413-452 (457)
295 PRK04176 ribulose-1,5-biphosph 69.0 6.3 0.00014 33.8 3.7 39 247-285 213-256 (257)
296 TIGR01317 GOGAT_sm_gam glutama 68.9 7.4 0.00016 36.7 4.5 40 243-284 440-479 (485)
297 PRK12779 putative bifunctional 68.6 6.8 0.00015 40.2 4.4 41 244-286 589-629 (944)
298 PRK12809 putative oxidoreducta 68.6 7.6 0.00016 38.1 4.6 47 45-102 362-408 (639)
299 PRK09078 sdhA succinate dehydr 68.2 7.7 0.00017 37.7 4.6 39 245-283 383-428 (598)
300 TIGR00292 thiazole biosynthesi 68.1 6.4 0.00014 33.7 3.6 38 246-283 211-253 (254)
301 KOG4716 Thioredoxin reductase 67.0 8.1 0.00018 34.4 3.9 64 37-101 232-300 (503)
302 PTZ00318 NADH dehydrogenase-li 66.9 14 0.00029 34.2 5.7 40 245-284 306-348 (424)
303 COG1635 THI4 Ribulose 1,5-bisp 66.6 5.8 0.00013 33.1 2.8 40 246-285 217-261 (262)
304 PRK05335 tRNA (uracil-5-)-meth 66.2 25 0.00055 32.6 7.2 77 195-283 286-363 (436)
305 PRK07845 flavoprotein disulfid 66.2 17 0.00038 34.0 6.4 37 243-281 300-336 (466)
306 PRK12778 putative bifunctional 66.1 9.2 0.0002 38.3 4.7 47 44-100 482-528 (752)
307 PRK12770 putative glutamate sy 66.1 12 0.00025 33.7 5.0 38 244-283 312-349 (352)
308 PLN02785 Protein HOTHEAD 65.9 16 0.00036 35.4 6.2 38 246-283 541-580 (587)
309 PRK10262 thioredoxin reductase 65.8 5.2 0.00011 35.3 2.7 43 243-286 275-317 (321)
310 PLN00128 Succinate dehydrogena 65.5 9.8 0.00021 37.3 4.7 39 245-283 421-466 (635)
311 COG4716 Myosin-crossreactive a 65.3 13 0.00028 33.7 4.9 58 14-72 194-256 (587)
312 TIGR03143 AhpF_homolog putativ 65.1 25 0.00055 33.8 7.4 53 44-100 61-113 (555)
313 COG0029 NadB Aspartate oxidase 65.0 19 0.00041 33.8 6.1 63 37-99 127-194 (518)
314 TIGR03315 Se_ygfK putative sel 64.9 8.3 0.00018 39.7 4.2 38 244-283 802-839 (1012)
315 PRK12771 putative glutamate sy 64.7 9.9 0.00021 36.6 4.5 39 244-284 406-444 (564)
316 PRK06134 putative FAD-binding 64.3 8.5 0.00018 37.3 4.0 43 244-286 525-574 (581)
317 TIGR00136 gidA glucose-inhibit 64.3 23 0.0005 34.4 6.8 34 247-283 357-390 (617)
318 PRK07843 3-ketosteroid-delta-1 63.7 8.3 0.00018 37.1 3.8 39 243-281 510-555 (557)
319 PRK12814 putative NADPH-depend 63.7 11 0.00024 37.0 4.7 39 244-284 463-501 (652)
320 PRK12835 3-ketosteroid-delta-1 63.0 10 0.00022 36.8 4.2 45 244-288 524-575 (584)
321 PRK08205 sdhA succinate dehydr 63.0 11 0.00024 36.5 4.5 40 244-283 372-418 (583)
322 TIGR02485 CobZ_N-term precorri 62.8 10 0.00022 35.2 4.1 39 244-282 384-429 (432)
323 PRK12834 putative FAD-binding 61.6 9.3 0.0002 36.7 3.7 38 244-281 501-548 (549)
324 PRK09853 putative selenate red 61.3 13 0.00028 38.4 4.7 40 243-284 803-842 (1019)
325 PRK08274 tricarballylate dehyd 60.9 11 0.00023 35.3 3.9 40 244-283 415-461 (466)
326 PRK12842 putative succinate de 60.6 12 0.00025 36.2 4.2 39 244-282 521-566 (574)
327 PRK06452 sdhA succinate dehydr 60.2 14 0.00031 35.6 4.7 40 244-283 356-403 (566)
328 PTZ00139 Succinate dehydrogena 60.1 12 0.00026 36.6 4.1 40 244-283 399-445 (617)
329 TIGR01812 sdhA_frdA_Gneg succi 59.6 12 0.00027 36.0 4.2 39 245-283 357-402 (566)
330 KOG2415 Electron transfer flav 59.4 19 0.00042 33.1 4.9 56 43-98 183-253 (621)
331 PF13434 K_oxygenase: L-lysine 59.3 16 0.00035 32.7 4.6 43 56-98 108-156 (341)
332 TIGR01421 gluta_reduc_1 glutat 59.3 16 0.00035 34.0 4.8 37 243-281 291-327 (450)
333 PRK12845 3-ketosteroid-delta-1 59.0 12 0.00025 36.2 3.9 39 243-281 518-563 (564)
334 PRK06116 glutathione reductase 58.8 16 0.00035 33.9 4.8 37 243-281 291-327 (450)
335 COG5044 MRS6 RAB proteins gera 58.4 21 0.00046 32.3 4.9 63 31-97 218-280 (434)
336 PRK05945 sdhA succinate dehydr 58.4 15 0.00033 35.5 4.6 40 244-283 367-413 (575)
337 PRK08958 sdhA succinate dehydr 58.1 16 0.00034 35.5 4.6 39 245-283 378-423 (588)
338 TIGR01372 soxA sarcosine oxida 57.3 14 0.00031 38.2 4.4 40 245-287 436-475 (985)
339 PLN02661 Putative thiazole syn 57.2 13 0.00029 33.4 3.6 40 246-285 285-329 (357)
340 PRK05976 dihydrolipoamide dehy 56.8 31 0.00068 32.3 6.3 37 243-281 306-342 (472)
341 PRK05675 sdhA succinate dehydr 56.7 18 0.00038 35.0 4.7 39 245-283 360-405 (570)
342 PRK09077 L-aspartate oxidase; 56.5 16 0.00034 35.0 4.3 41 243-283 362-409 (536)
343 PF01946 Thi4: Thi4 family; PD 56.4 69 0.0015 26.9 7.3 65 33-99 88-163 (230)
344 PRK07121 hypothetical protein; 56.2 12 0.00027 35.2 3.5 39 244-282 446-490 (492)
345 TIGR00551 nadB L-aspartate oxi 56.1 16 0.00034 34.6 4.2 40 243-282 342-388 (488)
346 TIGR01424 gluta_reduc_2 glutat 56.0 18 0.0004 33.6 4.6 37 243-281 289-325 (446)
347 PRK12839 hypothetical protein; 55.8 14 0.0003 35.8 3.8 41 244-284 522-569 (572)
348 PRK06069 sdhA succinate dehydr 55.4 14 0.00031 35.7 3.8 39 245-283 369-414 (577)
349 PRK06327 dihydrolipoamide dehy 54.8 40 0.00087 31.6 6.7 37 243-281 310-346 (475)
350 TIGR01317 GOGAT_sm_gam glutama 54.7 39 0.00085 31.9 6.6 44 56-99 349-412 (485)
351 COG2081 Predicted flavoprotein 54.7 15 0.00032 33.5 3.5 38 246-283 367-407 (408)
352 TIGR01176 fum_red_Fp fumarate 54.3 18 0.00039 35.1 4.3 41 243-283 366-413 (580)
353 PLN02507 glutathione reductase 54.1 20 0.00043 34.0 4.5 37 243-281 326-362 (499)
354 PRK12779 putative bifunctional 53.8 46 0.001 34.4 7.3 45 55-99 496-560 (944)
355 PRK06263 sdhA succinate dehydr 53.3 19 0.00041 34.5 4.3 41 243-283 357-403 (543)
356 PRK07057 sdhA succinate dehydr 53.2 17 0.00037 35.3 4.0 38 245-282 381-425 (591)
357 COG1635 THI4 Ribulose 1,5-bisp 53.0 76 0.0016 26.8 7.0 63 35-99 103-176 (262)
358 TIGR01423 trypano_reduc trypan 52.5 23 0.0005 33.4 4.7 37 243-281 314-350 (486)
359 TIGR03143 AhpF_homolog putativ 52.5 20 0.00043 34.5 4.3 41 243-284 269-309 (555)
360 COG3486 IucD Lysine/ornithine 52.2 22 0.00048 32.5 4.2 58 42-100 270-339 (436)
361 PRK08071 L-aspartate oxidase; 52.1 21 0.00045 34.0 4.3 40 243-282 341-387 (510)
362 PRK06175 L-aspartate oxidase; 51.8 20 0.00044 33.3 4.1 41 243-283 340-387 (433)
363 COG0492 TrxB Thioredoxin reduc 51.7 50 0.0011 29.1 6.3 51 46-99 181-236 (305)
364 COG1249 Lpd Pyruvate/2-oxoglut 51.7 22 0.00049 33.2 4.3 36 244-281 299-334 (454)
365 PRK09853 putative selenate red 51.6 51 0.0011 34.2 7.1 50 48-100 713-778 (1019)
366 PRK12843 putative FAD-binding 51.3 21 0.00046 34.5 4.3 39 244-282 526-571 (578)
367 PRK07512 L-aspartate oxidase; 51.2 22 0.00047 33.9 4.3 41 243-283 350-397 (513)
368 PRK09231 fumarate reductase fl 51.0 22 0.00047 34.5 4.3 41 243-283 367-414 (582)
369 PRK14727 putative mercuric red 50.8 20 0.00044 33.7 4.0 37 243-281 309-345 (479)
370 PRK13748 putative mercuric red 50.5 21 0.00045 34.3 4.1 37 243-281 391-427 (561)
371 PRK12837 3-ketosteroid-delta-1 50.3 14 0.00031 35.1 3.0 38 244-281 466-510 (513)
372 PRK06370 mercuric reductase; V 49.1 28 0.00061 32.5 4.7 38 243-282 297-334 (463)
373 PRK06481 fumarate reductase fl 48.7 21 0.00046 33.9 3.8 39 244-282 458-502 (506)
374 PRK06292 dihydrolipoamide dehy 48.6 25 0.00054 32.8 4.3 37 243-281 294-330 (460)
375 PRK14694 putative mercuric red 48.0 26 0.00057 32.8 4.3 37 243-281 298-334 (468)
376 PRK05249 soluble pyridine nucl 47.9 26 0.00057 32.6 4.3 37 243-281 298-334 (461)
377 TIGR00137 gid_trmFO tRNA:m(5)U 47.9 55 0.0012 30.5 6.2 77 195-283 285-362 (433)
378 PRK07818 dihydrolipoamide dehy 46.8 29 0.00064 32.4 4.4 37 243-281 299-335 (466)
379 KOG1399 Flavin-containing mono 46.6 61 0.0013 30.3 6.3 56 44-100 91-152 (448)
380 PRK08275 putative oxidoreducta 46.0 26 0.00056 33.7 4.0 41 242-283 364-404 (554)
381 PRK08641 sdhA succinate dehydr 45.2 31 0.00067 33.5 4.4 40 243-282 364-409 (589)
382 PLN02546 glutathione reductase 44.7 31 0.00067 33.3 4.2 37 243-281 376-412 (558)
383 PRK06467 dihydrolipoamide dehy 44.4 30 0.00065 32.5 4.1 37 243-281 300-336 (471)
384 COG2303 BetA Choline dehydroge 44.4 34 0.00073 32.9 4.4 47 52-99 212-264 (542)
385 PLN02815 L-aspartate oxidase 43.8 38 0.00083 32.9 4.8 41 242-282 385-432 (594)
386 PRK06444 prephenate dehydrogen 43.3 33 0.00072 28.1 3.6 44 39-108 7-50 (197)
387 COG3486 IucD Lysine/ornithine 43.1 29 0.00063 31.8 3.5 52 56-107 110-168 (436)
388 PRK06416 dihydrolipoamide dehy 42.6 36 0.00078 31.7 4.3 37 243-281 297-333 (462)
389 PRK08401 L-aspartate oxidase; 42.5 35 0.00077 32.0 4.2 40 243-282 319-365 (466)
390 PRK07846 mycothione reductase; 42.4 39 0.00083 31.6 4.4 37 243-281 288-324 (451)
391 COG3634 AhpF Alkyl hydroperoxi 42.1 39 0.00085 30.5 4.0 59 43-101 266-325 (520)
392 TIGR02053 MerA mercuric reduct 42.1 38 0.00083 31.6 4.4 37 243-281 292-328 (463)
393 PRK12814 putative NADPH-depend 42.1 92 0.002 30.7 7.1 49 49-99 368-435 (652)
394 PF03486 HI0933_like: HI0933-l 41.8 21 0.00045 32.9 2.5 33 245-277 373-408 (409)
395 PLN02852 ferredoxin-NADP+ redu 41.8 30 0.00064 32.8 3.5 40 245-285 384-423 (491)
396 TIGR03452 mycothione_red mycot 41.5 38 0.00082 31.6 4.2 37 243-281 291-327 (452)
397 PRK07803 sdhA succinate dehydr 41.2 35 0.00076 33.4 4.1 40 244-283 402-447 (626)
398 PRK06115 dihydrolipoamide dehy 40.5 38 0.00083 31.7 4.1 37 243-281 301-337 (466)
399 TIGR01438 TGR thioredoxin and 39.8 50 0.0011 31.2 4.8 38 243-281 306-343 (484)
400 PF03197 FRD2: Bacteriophage F 39.8 1E+02 0.0023 21.9 5.0 37 49-90 2-40 (102)
401 PF13533 Biotin_lipoyl_2: Biot 39.4 72 0.0016 19.4 3.9 36 67-102 3-38 (50)
402 KOG2311 NAD/FAD-utilizing prot 39.3 38 0.00082 31.9 3.7 49 56-105 138-190 (679)
403 PRK06854 adenylylsulfate reduc 39.2 53 0.0012 32.0 5.0 42 242-283 390-431 (608)
404 TIGR01350 lipoamide_DH dihydro 39.2 44 0.00096 31.1 4.3 37 244-282 296-332 (461)
405 KOG2665 Predicted FAD-dependen 39.1 52 0.0011 29.3 4.3 58 43-100 196-256 (453)
406 PF02006 DUF137: Protein of un 38.9 53 0.0011 26.1 3.9 51 43-96 43-96 (178)
407 COG4529 Uncharacterized protei 36.6 74 0.0016 29.9 5.1 60 37-97 98-160 (474)
408 PRK13761 hypothetical protein; 36.5 55 0.0012 27.4 3.8 49 45-96 108-157 (248)
409 PF03275 GLF: UDP-galactopyran 36.3 3.6 7.8E-05 33.8 -3.0 78 6-103 11-95 (204)
410 PRK13800 putative oxidoreducta 36.1 43 0.00092 34.4 3.9 40 243-283 370-409 (897)
411 TIGR01811 sdhA_Bsu succinate d 35.9 51 0.0011 32.2 4.2 40 243-282 379-424 (603)
412 PF00743 FMO-like: Flavin-bind 35.6 42 0.00091 32.2 3.6 57 44-108 282-339 (531)
413 PRK08626 fumarate reductase fl 35.4 57 0.0012 32.2 4.6 40 244-283 382-429 (657)
414 PRK06912 acoL dihydrolipoamide 34.6 53 0.0012 30.6 4.1 36 244-281 294-329 (458)
415 KOG1346 Programmed cell death 34.5 52 0.0011 30.4 3.7 49 46-99 261-309 (659)
416 PRK08010 pyridine nucleotide-d 34.5 59 0.0013 30.1 4.4 37 243-281 280-316 (441)
417 TIGR03315 Se_ygfK putative sel 34.1 1.2E+02 0.0026 31.7 6.6 51 45-99 708-774 (1012)
418 COG1252 Ndh NADH dehydrogenase 34.0 83 0.0018 29.0 5.0 40 246-285 290-333 (405)
419 PTZ00052 thioredoxin reductase 33.4 65 0.0014 30.6 4.5 37 244-281 304-340 (499)
420 COG1053 SdhA Succinate dehydro 33.4 56 0.0012 31.6 4.0 59 43-101 138-202 (562)
421 PRK07804 L-aspartate oxidase; 33.3 54 0.0012 31.4 4.0 40 243-282 366-412 (541)
422 PRK06567 putative bifunctional 33.2 1.3E+02 0.0029 31.2 6.7 36 46-82 644-679 (1028)
423 PRK05192 tRNA uridine 5-carbox 33.0 1.7E+02 0.0037 28.7 7.1 71 195-280 316-389 (618)
424 TIGR00275 flavoprotein, HI0933 32.6 35 0.00076 31.3 2.5 31 246-276 366-399 (400)
425 KOG2852 Possible oxidoreductas 31.8 86 0.0019 27.6 4.4 58 43-102 147-209 (380)
426 PRK05329 anaerobic glycerol-3- 31.0 65 0.0014 29.9 3.9 38 246-283 379-420 (422)
427 PTZ00367 squalene epoxidase; P 30.3 1.4E+02 0.003 28.9 6.2 35 247-281 336-373 (567)
428 TIGR00031 UDP-GALP_mutase UDP- 30.0 50 0.0011 30.1 3.0 33 247-280 344-376 (377)
429 PTZ00058 glutathione reductase 29.3 86 0.0019 30.3 4.6 39 243-281 361-431 (561)
430 KOG4405 GDP dissociation inhib 28.9 1.8E+02 0.004 26.9 6.1 89 7-96 248-340 (547)
431 TIGR02061 aprA adenosine phosp 28.7 77 0.0017 31.0 4.1 40 243-282 402-441 (614)
432 PTZ00306 NADH-dependent fumara 28.7 72 0.0016 33.9 4.2 40 244-283 857-902 (1167)
433 PRK07573 sdhA succinate dehydr 28.5 85 0.0018 30.9 4.4 36 243-278 415-456 (640)
434 PF09314 DUF1972: Domain of un 28.2 40 0.00087 27.3 1.8 27 38-65 16-42 (185)
435 PLN02172 flavin-containing mon 26.4 74 0.0016 29.9 3.5 27 80-106 267-293 (461)
436 COG0029 NadB Aspartate oxidase 25.4 1E+02 0.0022 29.1 4.1 41 243-283 350-397 (518)
437 PRK06748 hypothetical protein; 25.4 1.7E+02 0.0037 20.3 4.3 43 55-97 21-73 (83)
438 PRK07395 L-aspartate oxidase; 24.5 85 0.0018 30.3 3.6 39 243-281 356-401 (553)
439 PRK15458 tagatose 6-phosphate 24.2 66 0.0014 29.6 2.6 35 246-282 81-115 (426)
440 KOG3851 Sulfide:quinone oxidor 24.0 35 0.00075 30.4 0.8 34 64-101 112-145 (446)
441 COG0445 GidA Flavin-dependent 23.8 2.3E+02 0.005 27.4 6.0 72 196-281 317-394 (621)
442 PF08013 Tagatose_6_P_K: Tagat 23.4 68 0.0015 29.5 2.5 36 246-283 81-116 (424)
443 KOG1800 Ferredoxin/adrenodoxin 22.9 1E+02 0.0022 28.3 3.4 36 248-284 372-407 (468)
444 COG3573 Predicted oxidoreducta 22.9 2.1E+02 0.0045 25.9 5.3 54 44-98 150-225 (552)
445 PRK15052 D-tagatose-1,6-bispho 22.8 74 0.0016 29.2 2.6 35 246-282 78-112 (421)
446 TIGR02810 agaZ_gatZ D-tagatose 22.6 78 0.0017 29.1 2.7 34 246-281 77-110 (420)
447 PF14542 Acetyltransf_CG: GCN5 22.2 64 0.0014 21.9 1.7 26 40-65 38-63 (78)
448 smart00279 HhH2 Helix-hairpin- 21.3 54 0.0012 18.6 1.0 26 252-282 10-35 (36)
449 KOG0042 Glycerol-3-phosphate d 21.1 1E+02 0.0022 29.6 3.2 69 30-99 211-285 (680)
450 KOG4716 Thioredoxin reductase 21.0 1E+02 0.0022 27.8 3.0 42 244-286 328-369 (503)
451 PTZ00153 lipoamide dehydrogena 21.0 1.3E+02 0.0028 29.8 4.1 33 247-281 462-494 (659)
452 COG1701 Uncharacterized protei 20.9 1.5E+02 0.0032 24.6 3.7 12 84-96 149-160 (256)
453 TIGR03378 glycerol3P_GlpB glyc 20.8 1.1E+02 0.0023 28.4 3.3 35 246-280 381-419 (419)
454 PRK07251 pyridine nucleotide-d 20.1 1.7E+02 0.0036 27.0 4.6 37 243-281 279-315 (438)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=9e-39 Score=301.87 Aligned_cols=297 Identities=88% Similarity=1.384 Sum_probs=245.8
Q ss_pred CccccCCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEE
Q 022185 2 SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL 81 (301)
Q Consensus 2 ~~~~~~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~ 81 (301)
+.+++|.+++++|+.+++..+.+++....++...+++|+..++|.++|++.|++.|++|++|++|++|+.++++++++|+
T Consensus 267 ~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~ 346 (567)
T PLN02612 267 SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFL 346 (567)
T ss_pred HHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEE
Confidence 34677999999999999988887766667788899988854789999999999999999999999999987677666688
Q ss_pred EeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceeeeecCccchhhhhccc
Q 022185 82 LTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSL 161 (301)
Q Consensus 82 ~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 161 (301)
+.+|++++||+||+|+|+..+.+|+++...+.+..++++++.+.++++++++|++++|...++++++..+...++.++|.
T Consensus 347 ~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~ 426 (567)
T PLN02612 347 LTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMST 426 (567)
T ss_pred ECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhh
Confidence 87888899999999999999998887643334566677778888999999999999876555667765554445556665
Q ss_pred ccccccCCCCcEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCC
Q 022185 162 TCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRP 241 (301)
Q Consensus 162 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 241 (301)
.+.++++++.+++.+++.++.+|.+++++++++.++++|+++||+...++....+++.+.+.++|++.|...|+...++|
T Consensus 427 ~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp 506 (567)
T PLN02612 427 TCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRP 506 (567)
T ss_pred cchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCc
Confidence 55666676667777667777889999999999999999999999864322234577888999999999887788777888
Q ss_pred CCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhcCCCcccccC
Q 022185 242 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRLAEAS 298 (301)
Q Consensus 242 ~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~~~~~~~~~~~ 298 (301)
.+.+|++||||||||+.++|+++++||+.||++||++|+++++........++++++
T Consensus 507 ~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~ 563 (567)
T PLN02612 507 LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLAARGPRKLSEAT 563 (567)
T ss_pred cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 889999999999999999998999999999999999999999887777777777765
No 2
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=3.1e-34 Score=268.49 Aligned_cols=288 Identities=35% Similarity=0.610 Sum_probs=224.1
Q ss_pred CccccCCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecC--CC--cE
Q 022185 2 SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--DG--TV 77 (301)
Q Consensus 2 ~~~~~~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~--~g--~v 77 (301)
+.+.++.++|++|+.+++..+.+|.....++++.|++||+...|++++++.|+++|++|+++++|++|+.+. +| ++
T Consensus 254 l~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v 333 (569)
T PLN02487 254 AYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYV 333 (569)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeE
Confidence 456689999999999999998765545556789999999733699999999999999999999999999852 33 36
Q ss_pred EEEEE---eCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCcc------------
Q 022185 78 KNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY------------ 142 (301)
Q Consensus 78 ~~V~~---~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------ 142 (301)
++|++ .+++++.+|.||+|+|++.+.+|+|+.....+.+.++.++.+.++++++|+|++++....
T Consensus 334 ~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~ 413 (569)
T PLN02487 334 TGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAA 413 (569)
T ss_pred EEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccc
Confidence 77887 244578999999999999999999876322345777888888899999999998765321
Q ss_pred --ceeeeecCccchhhhhccccccc-cc-CCCCcEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEE
Q 022185 143 --DHLLFSRSSLLSVYADMSLTCKE-YY-NPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 218 (301)
Q Consensus 143 --~~~~~~~~~~~~~~~~~s~~~~~-~~-~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 218 (301)
++..+.......++.++....++ ++ +..++++.+++++++++..++++++++.++++|.++||... ..++.
T Consensus 414 g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~-----~~~v~ 488 (569)
T PLN02487 414 GLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSR-----GLEVT 488 (569)
T ss_pred cccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccc-----cCceE
Confidence 11111111111111222111122 22 23346788888888888899999999999999999999864 23566
Q ss_pred EEEEeecCCcceecCCCCCCCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhcCCCcc
Q 022185 219 KYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGKGRL 294 (301)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~~~~~~~ 294 (301)
+..+.++++++|...||....||...||++|||+||||+.++||.++|||+.||+.||+.|++.-+....-+|-.-
T Consensus 489 ~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~~~~ 564 (569)
T PLN02487 489 WSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLA 564 (569)
T ss_pred EEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 7789999999999999988888999999999999999999999999999999999999999998877766665443
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=7.7e-33 Score=256.85 Aligned_cols=274 Identities=36% Similarity=0.667 Sum_probs=210.8
Q ss_pred CccccCCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecC--CC--cE
Q 022185 2 SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--DG--TV 77 (301)
Q Consensus 2 ~~~~~~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~--~g--~v 77 (301)
+.+.++.+++++|+.+++.++..|.....++.+.+++||++..+.++|.+.|+++|++|+++++|++|+.++ ++ ++
T Consensus 178 l~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v 257 (474)
T TIGR02732 178 AYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRV 257 (474)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeE
Confidence 456689999999999998877766656677899999999755578889999999999999999999999843 23 26
Q ss_pred EEEEEeCC---cEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCcc------------
Q 022185 78 KNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY------------ 142 (301)
Q Consensus 78 ~~V~~~~g---~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------ 142 (301)
++|++.+| +++.||+||+|+|++.+.+|+++.....+....+.++.+.++++++++|++++....
T Consensus 258 ~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~ 337 (474)
T TIGR02732 258 TGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAA 337 (474)
T ss_pred EEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccc
Confidence 66777544 568999999999999999999874222245667788888999999999997664321
Q ss_pred --ceeeeecCccchhhhhcccccc-cccCCCC-cEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEE
Q 022185 143 --DHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIV 218 (301)
Q Consensus 143 --~~~~~~~~~~~~~~~~~s~~~~-~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~ 218 (301)
+++.+.......++.+++...+ +|++++. .++.+++.++.++.+++++++.+.++++|+++||... ..+++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~-----~~~~~ 412 (474)
T TIGR02732 338 GLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSK-----NLKLT 412 (474)
T ss_pred cccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCcccc-----CCcee
Confidence 1111111100111122221223 3444443 4566777766677789999999999999999999754 23577
Q ss_pred EEEEeecCCcceecCCCCCCCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 022185 219 KYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~ 280 (301)
+..+.+.+++.|.+.||+.+.+|...+|++|||+||||+.++||.++|||+.||+.||+.|+
T Consensus 413 ~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 413 WSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred EEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 77889999999998999988889999999999999999999999999999999999999874
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.2e-31 Score=248.76 Aligned_cols=274 Identities=72% Similarity=1.160 Sum_probs=207.6
Q ss_pred cccCCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe
Q 022185 4 ALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT 83 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~ 83 (301)
++++.+|+++|+.+++..+..++....+....+..|+.+++++++|.+.|+++|++|++|++|++|+..++|++++|++.
T Consensus 174 ~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~ 253 (453)
T TIGR02731 174 ALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLA 253 (453)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEe
Confidence 45688999999999988877666545566666777764478999999999989999999999999987667777778886
Q ss_pred CCc-----EEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceeeeecCccchhhhh
Q 022185 84 NGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYAD 158 (301)
Q Consensus 84 ~g~-----~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
+|+ ++.||.||+|+|++.+.++++.........+.+.++++.+++++++.++++++.. .++++...+......+
T Consensus 254 ~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 332 (453)
T TIGR02731 254 DGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTV-DHLLFSRSPLLSVYAD 332 (453)
T ss_pred cCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCC-CceeeeCCCcceeecc
Confidence 665 7899999999999999999875421134556677778888999999999988743 3444544332222223
Q ss_pred cccccccccCCCCcEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCC
Q 022185 159 MSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP 238 (301)
Q Consensus 159 ~s~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 238 (301)
.+..+.+..+++++++++++.....+.+++++++.+.++++|+++||+.... .....++.+.+.++|++.|...||...
T Consensus 333 ~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~-~~~~~~~~~~~~~~p~a~~~~~pg~~~ 411 (453)
T TIGR02731 333 MSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKA-DSPAKILKYKVVKTPRSVYKTTPGRQQ 411 (453)
T ss_pred hhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCC-CCCceEEEEEEEECCCceeccCCCChh
Confidence 3322223334455666665555567778999999999999999999863100 013456777888999998876788656
Q ss_pred CCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHH
Q 022185 239 CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 279 (301)
Q Consensus 239 ~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i 279 (301)
.++...+|++||||||++++.+|+++||||++||++||++|
T Consensus 412 ~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 412 YRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred hCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 67777899999999999999999899999999999999987
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.97 E-value=7.8e-29 Score=227.58 Aligned_cols=261 Identities=27% Similarity=0.400 Sum_probs=186.4
Q ss_pred cccCCCCccccHHHHHHHHHH-HhhccCCceEeeecCCCcccch-HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEE
Q 022185 4 ALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL 81 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~~~~~-~~~~~~~~~~~~~~GG~~~~l~-~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~ 81 (301)
+++..+++++|+.+++..+.. +.....+..+.||+||+ .+++ ++|++.|++.|++|++|++|++|+.++++ +..+.
T Consensus 157 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~ 234 (419)
T TIGR03467 157 SALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPL-SELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALV 234 (419)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCH-HHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEE
Confidence 346789999999988776654 22233445789999996 5555 55999998899999999999999996444 43233
Q ss_pred EeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceeeeecCccchhhhhccc
Q 022185 82 LTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSL 161 (301)
Q Consensus 82 ~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 161 (301)
..+|+++.||.||+|+|++++.+++++. +..+++++++|.++.++++.+++++|...+...+...+...++ +.+
T Consensus 235 ~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 308 (419)
T TIGR03467 235 LSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQWLF-DRG- 308 (419)
T ss_pred ecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCceeEEE-ECC-
Confidence 3467789999999999999999998752 3455678889999999999999988643222112111111111 111
Q ss_pred ccccccCCCCcEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCC
Q 022185 162 TCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRP 241 (301)
Q Consensus 162 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 241 (301)
. .++...++.+++.....+.+++++++.+.++++|+++||.... ..+.+..+.++.++.|...+|....+|
T Consensus 309 ---~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~ 379 (419)
T TIGR03467 309 ---Q-LAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAG-----AKPLWARVIKEKRATFAATPGLNRLRP 379 (419)
T ss_pred ---c-CCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCcccc-----CCccceEEEEccCCccccCCcccccCC
Confidence 1 1112244445455455677889999999999999999986521 123333455555666655566655567
Q ss_pred CCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 242 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 242 ~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
...+|.+|||||||+++++++++|+||+.||.+||++|++
T Consensus 380 ~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 380 GARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 6678899999999999988888999999999999999874
No 6
>PRK07233 hypothetical protein; Provisional
Probab=99.95 E-value=5.6e-26 Score=209.69 Aligned_cols=269 Identities=23% Similarity=0.301 Sum_probs=190.2
Q ss_pred ccccCCCCccccHHHHHHHHHHHhhc---cCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEE
Q 022185 3 KALNFINPDELSMQCILIALNRFLQE---KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN 79 (301)
Q Consensus 3 ~~~~~~~~e~~sa~~~~~~~~~~~~~---~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~ 79 (301)
..+++.+++++|+.+++..+...... .....+.+|+||+ ++++++|.+.+++.|++|+++++|++|+.+ ++++..
T Consensus 156 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~ 233 (434)
T PRK07233 156 ESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTG 233 (434)
T ss_pred hcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEE
Confidence 34578899999999876555432111 1134588999996 999999999999999999999999999985 444543
Q ss_pred EEEeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceeee-ec--Cccchhh
Q 022185 80 FLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLF-SR--SSLLSVY 156 (301)
Q Consensus 80 V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~~~~~~ 156 (301)
+. .+|++++||.||+|+|++.+.+++++. +....+.++++.+.+..++++++++++... .++. .. .++.+++
T Consensus 234 ~~-~~~~~~~ad~vI~a~p~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 308 (434)
T PRK07233 234 VE-VDGEEEDFDAVISTAPPPILARLVPDL--PADVLARLRRIDYQGVVCMVLKLRRPLTDY--YWLNINDPGAPFGGVI 308 (434)
T ss_pred EE-eCCceEECCEEEECCCHHHHHhhcCCC--cHHHHhhhcccCccceEEEEEEecCCCCCC--ceeeecCCCCCcceEE
Confidence 44 466789999999999999999988653 334456677888888999999999876532 2222 12 2222221
Q ss_pred hhcccccccccCCCCcEEEEE-ecC-CCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCC
Q 022185 157 ADMSLTCKEYYNPNQSMLELV-FAP-AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIP 234 (301)
Q Consensus 157 ~~~s~~~~~~~~~g~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
..+..++...|++++++.+. +.+ ...+..++++++.+.++++|++++|++. ...++...+.+++++.+.+.+
T Consensus 309 -~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~-----~~~~~~~~~~r~~~a~~~~~~ 382 (434)
T PRK07233 309 -EHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD-----RDDVRAVRISRAPYAQPIYEP 382 (434)
T ss_pred -EecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC-----hhheeeEEEEEeccccccccC
Confidence 12222333333455544332 333 2334467889999999999999999763 124566677777777665566
Q ss_pred CCCCCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 235 NCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 235 g~~~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
|....++...+|++|||||||++...+.++|++|+.||++||++|++.+.
T Consensus 383 g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 383 GYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred chhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 75556666778899999999954443445899999999999999988753
No 7
>PLN02676 polyamine oxidase
Probab=99.93 E-value=1.1e-24 Score=202.54 Aligned_cols=266 Identities=17% Similarity=0.178 Sum_probs=175.1
Q ss_pred cCCCCccccHHHHHHHHHHHhhccCCceEeee--cCCCcccchHHHHHHHHHc------CcEEEecceeeEEEecCCCcE
Q 022185 6 NFINPDELSMQCILIALNRFLQEKHGSKMAFL--DGNPPERLCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTV 77 (301)
Q Consensus 6 ~~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~--~GG~~~~l~~~l~~~l~~~------g~~I~l~~~V~~I~~~~~g~v 77 (301)
+..+++++|+..++. ...+ ...+....++ +||+ ++|++.|++.+.++ +.+|++|++|++|.+++++ |
T Consensus 189 ~~~~~~~~S~~~~~~-~~~~--~~~g~~~~~~~~~~G~-~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V 263 (487)
T PLN02676 189 FAEPPRVTSLKNTEP-NPTF--VDFGEDEYFVADPRGY-ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-V 263 (487)
T ss_pred eccCccccchhhcCc-cccc--ccCCCceEEeecCCCH-HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-E
Confidence 355677777765421 1111 1122223344 6896 99999999977432 3689999999999997555 6
Q ss_pred EEEEEeCCcEEecCEEEEccChhhHhh--c-CCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCc-cceee--eecCc
Q 022185 78 KNFLLTNGNVIDGDAYVFATPVDILKL--Q-LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-YDHLL--FSRSS 151 (301)
Q Consensus 78 ~~V~~~~g~~~~ad~VI~a~p~~~l~~--l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~ 151 (301)
+ |++.+|++++||+||+|+|+.++++ + ..+. +|..+.++++++.+....|+++.|+++||.. ....+ +....
T Consensus 264 ~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~-LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~ 341 (487)
T PLN02676 264 T-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPP-LPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHER 341 (487)
T ss_pred E-EEECCCCEEEeCEEEEccChHHhccCceEEeCC-CCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccc
Confidence 4 8888898999999999999999975 3 2222 3556677889999988999999999999963 11111 21111
Q ss_pred --cchhhhhcccccccccCCCCcEEEEEecC--CCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCC
Q 022185 152 --LLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR 227 (301)
Q Consensus 152 --~~~~~~~~s~~~~~~~~~g~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 227 (301)
....+... .. .+++..++.+.+.+ +..+..+++++..+.+++.|.++||.... .........+...|+
T Consensus 342 ~~~~~~~~~~---~~--~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~---~p~~~~~~~W~~dp~ 413 (487)
T PLN02676 342 RGYYPFWQHL---EN--EYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIP---EATDILVPRWWSNRF 413 (487)
T ss_pred cccchhhhhc---cc--CCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCC---CcceEEecccCCCCC
Confidence 11111000 00 12233455444433 34567789999999999999999974221 111222223333344
Q ss_pred --ccee-cCCCCC-CCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 228 --SVYK-TIPNCE-PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 228 --~~~~-~~~g~~-~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
+.|. ..||.. ...+.+..|+++|||||++++..|+++|+||++||++||++|++.+...
T Consensus 414 s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~ 476 (487)
T PLN02676 414 FKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKK 476 (487)
T ss_pred CCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhccC
Confidence 3443 345543 2233456788999999999998888999999999999999999987653
No 8
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.93 E-value=6.4e-24 Score=199.00 Aligned_cols=260 Identities=19% Similarity=0.211 Sum_probs=172.5
Q ss_pred CCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-
Q 022185 7 FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG- 85 (301)
Q Consensus 7 ~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g- 85 (301)
..++++.|+.+.+..+.+ . .. ..+.++++||+ ++|+++|++.|+++|++|+++++|++|..+ ++++.+|++.+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~-~~-~~G~~~~~GG~-~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~ 274 (492)
T TIGR02733 200 QEDADETAALYGATVLQM-A-QA-PHGLWHLHGSM-QTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSR 274 (492)
T ss_pred cCChhhhhHHHHHHHhhc-c-cc-CCCceeecCcH-HHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCC
Confidence 355677777765433332 1 11 12467899996 999999999999999999999999999985 555656766554
Q ss_pred ----cEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcC-eEEEEEEecccC-CCc-cce--eeeecCccchhh
Q 022185 86 ----NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP-VINIHIWFDRKL-KNT-YDH--LLFSRSSLLSVY 156 (301)
Q Consensus 86 ----~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~-~~~--~~~~~~~~~~~~ 156 (301)
++++||.||+|+|+..+.+++++...+....+.++++.+++ .+++++.+++.. ... ..+ .+++.... .+
T Consensus 275 ~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 352 (492)
T TIGR02733 275 KQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGS--LF 352 (492)
T ss_pred CCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCce--EE
Confidence 57899999999999998888864322334556677778764 668999998732 111 111 22222221 11
Q ss_pred hhcccccccccCCCCcEEEEE-ecCCCccCCC-------ChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCc
Q 022185 157 ADMSLTCKEYYNPNQSMLELV-FAPAEEWISC-------SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS 228 (301)
Q Consensus 157 ~~~s~~~~~~~~~g~~~l~~~-~~~~~~~~~~-------~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 228 (301)
...+...+..+|+|++++.+. +.+...|..+ .++++.+.+++.|++.+|++. ..+......+|..
T Consensus 353 v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l~-------~~i~~~~v~TP~t 425 (492)
T TIGR02733 353 VSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLLE-------ENWVHVELATPRT 425 (492)
T ss_pred EEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCcc-------ccEEEEEccCCch
Confidence 111223345678888776543 3443344321 245688899999999999875 2234445556653
Q ss_pred c-----------eecC--CCCC-CCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 229 V-----------YKTI--PNCE-PCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 229 ~-----------~~~~--~g~~-~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
. |... ..+. .+++..++|++|||+||+++++| +|+.|++.||+.+|+.|++.
T Consensus 426 ~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 426 FERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG--EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred HHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC--CcHHHHHHHHHHHHHHHhhc
Confidence 1 1111 1111 13344478999999999999886 69999999999999999853
No 9
>PLN02976 amine oxidase
Probab=99.92 E-value=2.9e-24 Score=211.88 Aligned_cols=245 Identities=17% Similarity=0.182 Sum_probs=162.5
Q ss_pred eEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecC---------CCcEEEEEEeCCcEEecCEEEEccChhhHh
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---------DGTVKNFLLTNGNVIDGDAYVFATPVDILK 103 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~---------~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~ 103 (301)
..+.+.||| ++|+++|++.| .|++|++|++|.+.. ++.|. |++.+|++++||+||+|+|+.+++
T Consensus 927 ~~~rIkGGY-qqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVt-VtTsDGetftADaVIVTVPLGVLK 999 (1713)
T PLN02976 927 AHCMIKGGY-SNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVK-VSTSNGSEFLGDAVLITVPLGCLK 999 (1713)
T ss_pred ceEEeCCCH-HHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEE-EEECCCCEEEeceEEEeCCHHHhh
Confidence 456688997 99999999865 599999999999841 23353 788899899999999999999987
Q ss_pred h--c-CCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceee---eecCccchhhhhcccccccccCCCCcEEEEE
Q 022185 104 L--Q-LPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLL---FSRSSLLSVYADMSLTCKEYYNPNQSMLELV 177 (301)
Q Consensus 104 ~--l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~ 177 (301)
. + +.+. +|..+..+++++.++...|+++.|+++||......+ +...+..+.+. ..++...+.+..+|..+
T Consensus 1000 ag~I~FsPP-LPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~---~~wnlr~psG~pVLVaf 1075 (1713)
T PLN02976 1000 AETIKFSPP-LPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCF---MFWNVKKTVGAPVLIAL 1075 (1713)
T ss_pred hcccccCCc-ccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEE---EeccCCCCCCCCEEEEE
Confidence 2 3 2222 255567778999998899999999999996311111 11111111100 01111122344565544
Q ss_pred ecC--CCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceec-CCCCCC-CCCCCCCCCCC-eEE
Q 022185 178 FAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKT-IPNCEP-CRPLQRSPVEG-FYL 252 (301)
Q Consensus 178 ~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~p~~~-l~~ 252 (301)
+.+ +..+..++++++.+.+++.|.++||+...++........|...++-++.|.+ .||... .+..+..|+.+ |||
T Consensus 1076 v~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFF 1155 (1713)
T PLN02976 1076 VVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFF 1155 (1713)
T ss_pred eccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEE
Confidence 433 3456788999999999999999998532111111122222222222244533 355432 22334567765 999
Q ss_pred eeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhh
Q 022185 253 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 288 (301)
Q Consensus 253 aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~ 288 (301)
||++++..|+++|+||++||.++|++|+..+..+.+
T Consensus 1156 AGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~ 1191 (1713)
T PLN02976 1156 AGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGND 1191 (1713)
T ss_pred EehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCc
Confidence 999999988899999999999999999998876544
No 10
>PLN03000 amine oxidase
Probab=99.91 E-value=1.6e-23 Score=201.32 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=160.4
Q ss_pred eEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHh----hcCCc
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK----LQLPE 108 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~----~l~~~ 108 (301)
....+.||+ ++|+++|++.| +|+++++|++|.+.+++ |. |++. +++++||+||+|+|+.+++ .+.|+
T Consensus 372 ~~~~v~GG~-~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dg-V~-V~~~-~~~~~AD~VIvTVPlgVLk~~~I~F~Pp 442 (881)
T PLN03000 372 DHCFLPGGN-GRLVQALAENV-----PILYEKTVQTIRYGSNG-VK-VIAG-NQVYEGDMVLCTVPLGVLKNGSIKFVPE 442 (881)
T ss_pred ceEEeCCCH-HHHHHHHHhhC-----CcccCCcEEEEEECCCe-EE-EEEC-CcEEEeceEEEcCCHHHHhhCceeeCCC
Confidence 456688996 99999999876 49999999999996555 53 6653 4589999999999999998 23455
Q ss_pred hhhhcHHHHHHhhcCCcCeEEEEEEecccCCCcc-c--eeeeecCccchhhhhcccccccccC-CCCcEEEEEecC--CC
Q 022185 109 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLSVYADMSLTCKEYYN-PNQSMLELVFAP--AE 182 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~~~~-~g~~~l~~~~~~--~~ 182 (301)
+ |..+.++++++.|....|+++.|++++|... + ..+.......+.+. .+.++.+ .+..++..++.+ +.
T Consensus 443 L--P~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~----~f~s~sp~~G~pVLvafv~Gd~A~ 516 (881)
T PLN03000 443 L--PQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFF----LFYSYAPVAGGPLLIALVAGEAAH 516 (881)
T ss_pred C--CHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeE----EEeCCCCCCCCcEEEEEecCchhH
Confidence 3 5567888999999999999999999998631 1 11221111100000 1111223 233444444332 35
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCC--CccccccCceEEEEEEeecCCcceec-CCCCCC-CCCCCCCCC--CCeEEeecc
Q 022185 183 EWISCSDSEIIDATMKELAKLFPD--EISADQSKAKIVKYHVVKTPRSVYKT-IPNCEP-CRPLQRSPV--EGFYLAGDY 256 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~p~--~~l~~aGd~ 256 (301)
.+..++++++.+.+++.|+++|+. ...++.....+.+|...++-.+.|.+ .+|... .......|+ ++|||||++
T Consensus 517 ~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEa 596 (881)
T PLN03000 517 KFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEA 596 (881)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehH
Confidence 678899999999999999999963 11010111112222222222334532 345321 222334554 589999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhc
Q 022185 257 TKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 289 (301)
Q Consensus 257 ~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~~ 289 (301)
++..|+++|+||++||++||++|++.+..-...
T Consensus 597 Ts~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~ 629 (881)
T PLN03000 597 TTRRYPATMHGAFVTGLREAANMAQSAKARGIR 629 (881)
T ss_pred HhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 998888999999999999999999987654443
No 11
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.91 E-value=9.2e-23 Score=180.59 Aligned_cols=238 Identities=18% Similarity=0.158 Sum_probs=166.2
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhc-CCchhhh
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPENWKE 112 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l-~~~~~~~ 112 (301)
...+-||| ++|.+++++.| |-.|+++++|.+|.+.++| |+ |++.+..++++|+||||+|+.++.++ +.+. ++
T Consensus 201 ~~~~~GGm-d~la~Afa~ql---~~~I~~~~~V~rI~q~~~g-V~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~-l~ 273 (450)
T COG1231 201 MLQRLGGM-DQLAEAFAKQL---GTRILLNEPVRRIDQDGDG-VT-VTADDVGQYVADYVLVTIPLAILGQIDFAPL-LP 273 (450)
T ss_pred hhccCccH-HHHHHHHHHHh---hceEEecCceeeEEEcCCe-EE-EEeCCcceEEecEEEEecCHHHHhhcccCCC-CC
Confidence 33444997 99999999988 7899999999999997776 64 88767457999999999999999887 3332 35
Q ss_pred cHHHHHHhhcCCcCeEEEEEEecccCCCc---cceeeeecCccchhhhhcccccccccCCCCcEEEEEe---cCCCccCC
Q 022185 113 MAYFKRLEKLVGVPVINIHIWFDRKLKNT---YDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVF---APAEEWIS 186 (301)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~---~~~~~~~~ 186 (301)
.++.+++..+.|.+..|+.+.|+++||+. ++...+.+..+. ...+.| + ...+|..++.-.+ ..+..|..
T Consensus 274 ~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~-~i~~~s---~-~~~~G~gVl~g~~~~g~~A~~~~~ 348 (450)
T COG1231 274 AEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLG-FISYPS---A-PFADGPGVLLGSYAFGDDALVIDA 348 (450)
T ss_pred HHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcc-eEecCc---c-ccCCCceEEEeeeeccccceeEec
Confidence 56777788899999999999999999963 344445444322 111111 1 1123445655433 23567889
Q ss_pred CChHHHHHHHHHHHHHhCCCCc-cccccCceEEEEEEeecCCcce-ecCCCCC-CCCCCCCCCCCCeEEeeccccCCCCC
Q 022185 187 CSDSEIIDATMKELAKLFPDEI-SADQSKAKIVKYHVVKTPRSVY-KTIPNCE-PCRPLQRSPVEGFYLAGDYTKQKYLA 263 (301)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~p~~~l~~aGd~~~~~~~~ 263 (301)
++++++.+.++..+.++||+.. ++ ......+.|...+|-.+.+ .+.+|+. ++.+.+..|.++|+|||....+.++|
T Consensus 349 ~~~~~r~~~vl~~l~~~~g~~a~~~-f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~G 427 (450)
T COG1231 349 LPEAERRQKVLARLAKLFGDEAADP-FDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGG 427 (450)
T ss_pred CCHHHHHHHHHHhHhhhCChhhccc-cccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccc
Confidence 9999999999999999999532 11 1111233333332222322 2234443 34566678899999999444445889
Q ss_pred chhHHHHHHHHHHHHHHHHhh
Q 022185 264 SMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 264 ~v~gA~~SG~~aA~~i~~~~~ 284 (301)
+++||+.||.+||.+|...+.
T Consensus 428 w~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 428 WLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred hhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988653
No 12
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.91 E-value=3e-22 Score=188.26 Aligned_cols=263 Identities=20% Similarity=0.228 Sum_probs=174.2
Q ss_pred CCCCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCc
Q 022185 7 FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN 86 (301)
Q Consensus 7 ~~~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~ 86 (301)
..+|++.|+.+.+..+.. . ....++++||+ .+++++|.+.++++|++|+++++|++|..+ ++++++|++.+|+
T Consensus 189 g~~p~~~~~~~~l~~~~~---~--~~g~~~~~gG~-~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~ 261 (502)
T TIGR02734 189 GGNPFRTPSIYALISALE---R--EWGVWFPRGGT-GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGE 261 (502)
T ss_pred ccCcccchHHHHHHHHHH---h--hceEEEcCCCH-HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCC
Confidence 367778887655432221 1 13567899996 999999999999999999999999999984 5566678888888
Q ss_pred EEecCEEEEccChhhH-hhcCCchhhhcHHHHHHhhcCCc-CeEEEEEEec---ccCCC-ccceeeeecCccc----hhh
Q 022185 87 VIDGDAYVFATPVDIL-KLQLPENWKEMAYFKRLEKLVGV-PVINIHIWFD---RKLKN-TYDHLLFSRSSLL----SVY 156 (301)
Q Consensus 87 ~~~ad~VI~a~p~~~l-~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~-~~~~~~~~~~~~~----~~~ 156 (301)
+++||.||+|+++..+ ..|+++...+....+.+++++++ +.+++++.++ +++.. ...++++.. ++. ..+
T Consensus 262 ~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 340 (502)
T TIGR02734 262 RLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGP-RYKELFDEIF 340 (502)
T ss_pred EEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCc-CHHHHHHHHh
Confidence 8999999999998655 46666543232233445566654 6788999998 34431 122222211 110 000
Q ss_pred -------------hhcccccccccCCCCcEEEEE-ecCCC-----ccCCCChHHHHHHHHHHHHHh-CCCCccccccCce
Q 022185 157 -------------ADMSLTCKEYYNPNQSMLELV-FAPAE-----EWISCSDSEIIDATMKELAKL-FPDEISADQSKAK 216 (301)
Q Consensus 157 -------------~~~s~~~~~~~~~g~~~l~~~-~~~~~-----~~~~~~~~~~~~~~~~~l~~~-~p~~~~~~~~~~~ 216 (301)
...|...++.+|+|++++.+. ..+.. .|.. .++++.+.+++.|++. +|++.. .
T Consensus 341 ~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~------~ 413 (502)
T TIGR02734 341 RKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRD------R 413 (502)
T ss_pred cCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhH------h
Confidence 012234466788888776543 33321 2422 3567899999999998 999852 2
Q ss_pred EEEEEEeecCCcc-----------eecCC--CC-CCCCCC-CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 217 IVKYHVVKTPRSV-----------YKTIP--NC-EPCRPL-QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 217 ~~~~~~~~~~~~~-----------~~~~~--g~-~~~~~~-~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
+.+....+|... |...+ .+ ..++|. ..+|++|||+||+++++| +|+.||+.||+.+|+.|++
T Consensus 414 -i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~ 490 (502)
T TIGR02734 414 -IVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLG 490 (502)
T ss_pred -eEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHh
Confidence 334445555431 11111 11 124553 357899999999999886 6999999999999999998
Q ss_pred Hhhhhh
Q 022185 282 DYVLLA 287 (301)
Q Consensus 282 ~~~~~~ 287 (301)
+.+...
T Consensus 491 ~~~~~~ 496 (502)
T TIGR02734 491 DLAPGP 496 (502)
T ss_pred hccCCC
Confidence 765543
No 13
>PLN02568 polyamine oxidase
Probab=99.90 E-value=9.6e-23 Score=191.13 Aligned_cols=243 Identities=20% Similarity=0.242 Sum_probs=159.9
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhh-------cC
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL-------QL 106 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~-------l~ 106 (301)
...+.||+ ++|+++|++.|+ +.+|+++++|++|++.+++ |+ |++.+|++++||.||+|+|+.++++ .+
T Consensus 234 ~~~i~gG~-~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~-v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F 308 (539)
T PLN02568 234 EITIAKGY-LSVIEALASVLP--PGTIQLGRKVTRIEWQDEP-VK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLF 308 (539)
T ss_pred eEEECCcH-HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe-EE-EEEcCCCEEEcCEEEEcCCHHHHhhcccccccee
Confidence 45678996 999999999984 5689999999999996444 54 8888888899999999999999985 13
Q ss_pred CchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCc------cc--eeeeecCcc-------chhhhhcccccccccCCCC
Q 022185 107 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT------YD--HLLFSRSSL-------LSVYADMSLTCKEYYNPNQ 171 (301)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~--~~~~~~~~~-------~~~~~~~s~~~~~~~~~g~ 171 (301)
.+. +|..+.++++++.+..+.|+++.|++++|.. +. .+++...+. ...+.......+ ...+.
T Consensus 309 ~P~-LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 385 (539)
T PLN02568 309 SPP-LPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP--IHKNS 385 (539)
T ss_pred cCC-CCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc--cCCCC
Confidence 232 2556788899999989999999999998641 11 112221110 000000000001 11234
Q ss_pred cEEEEEecC--CCccCCCChHHHHHHHHHHHHHhCCCCccc----------------cccCceEEEEEEe---ecCC--c
Q 022185 172 SMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISA----------------DQSKAKIVKYHVV---KTPR--S 228 (301)
Q Consensus 172 ~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~----------------~~~~~~~~~~~~~---~~~~--~ 228 (301)
.++...+.+ +..+..++++++.+.+++.|+++||....+ +-....+...... ..|+ +
T Consensus 386 ~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~G 465 (539)
T PLN02568 386 SVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLG 465 (539)
T ss_pred CEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCC
Confidence 565554443 355778999999999999999999743110 0000112222222 2333 3
Q ss_pred ceec-CCCCCC-CCCCCCCC-------------CCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 229 VYKT-IPNCEP-CRPLQRSP-------------VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 229 ~~~~-~~g~~~-~~~~~~~p-------------~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.|.+ .||... .+..+..| .++|||||++++..|+++|+||++||+++|++|++.++
T Consensus 466 sYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 466 SYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred ccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 4543 345432 11122333 34799999999999889999999999999999998764
No 14
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.90 E-value=2.2e-23 Score=191.36 Aligned_cols=236 Identities=31% Similarity=0.482 Sum_probs=150.5
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhh--cCCchhh
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWK 111 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l~~~~~~ 111 (301)
+....|++ ..+...+.+ ..|++|++|++|++|+.+ +++|. |++.+|++++||+||+|+|+..+.+ +.|+.
T Consensus 204 ~~~~~g~~-~~~~~~~~~---~~g~~i~l~~~V~~I~~~-~~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l-- 275 (450)
T PF01593_consen 204 LTVGMGGL-SLALALAAE---ELGGEIRLNTPVTRIERE-DGGVT-VTTEDGETIEADAVISAVPPSVLKNILLLPPL-- 275 (450)
T ss_dssp EEEETTTT-HHHHHHHHH---HHGGGEESSEEEEEEEEE-SSEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEESTS--
T ss_pred eeecccch-hHHHHHHHh---hcCceeecCCcceecccc-ccccc-cccccceEEecceeeecCchhhhhhhhhcccc--
Confidence 44455563 444444333 347899999999999996 45574 8888998999999999999999985 44542
Q ss_pred hcHHHHHHhhcCCcCeEEEEEEecccCCCc---cceeeeecC-ccchhhhhcccccccccCCCCcEEEEE-ecC-CCccC
Q 022185 112 EMAYFKRLEKLVGVPVINIHIWFDRKLKNT---YDHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELV-FAP-AEEWI 185 (301)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~-~~~~~~~~~s~~~~~~~~~g~~~l~~~-~~~-~~~~~ 185 (301)
+....++++++.+.+..++++.+++++|.. ....++.+. ....++.+.+.. +.. ++..++..+ ..+ ...+.
T Consensus 276 ~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~~ 352 (450)
T PF01593_consen 276 PEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKF-PGR--PGGGVLTSYVGGPDAPEWD 352 (450)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCT-TSC--TTSEEEEEEEEHHHHHHHT
T ss_pred cccccccccccccCcceeEEEeeecccccccccccceecccCccccccccccccC-ccc--ccCCcceeeeeccccchhc
Confidence 334566778888988889999999998854 223444433 111111122211 111 233344333 332 24677
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCC--CCCCCCCCC-CCeEEeeccccCCCC
Q 022185 186 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYL 262 (301)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~p~-~~l~~aGd~~~~~~~ 262 (301)
.++++++++.++++|++++|....++.....+.+|...+++.+.|.+.+.... +++....|+ +||||||||+++++.
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~ 432 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP 432 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC
Confidence 88999999999999999999521111111122233323334444433222222 344556777 699999999998877
Q ss_pred CchhHHHHHHHHHHHHHH
Q 022185 263 ASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 263 ~~v~gA~~SG~~aA~~i~ 280 (301)
++++||+.||++||+.|+
T Consensus 433 ~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 433 GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC
Confidence 899999999999999986
No 15
>PLN02529 lysine-specific histone demethylase 1
Probab=99.90 E-value=2.4e-22 Score=192.37 Aligned_cols=239 Identities=18% Similarity=0.213 Sum_probs=154.0
Q ss_pred ceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhc----CC
Q 022185 32 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ----LP 107 (301)
Q Consensus 32 ~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l----~~ 107 (301)
.....+.||+ ++|+++|++. .+|++|++|++|.++++| |. |++ ++++++||+||+|+|++++++. .|
T Consensus 347 G~~~~i~GG~-~~Li~aLA~~-----L~IrLnt~V~~I~~~~dG-Vt-V~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~P 417 (738)
T PLN02529 347 GDHCFLAGGN-WRLINALCEG-----VPIFYGKTVDTIKYGNDG-VE-VIA-GSQVFQADMVLCTVPLGVLKKRTIRFEP 417 (738)
T ss_pred CceEEECCcH-HHHHHHHHhc-----CCEEcCCceeEEEEcCCe-EE-EEE-CCEEEEcCEEEECCCHHHHHhccccCCC
Confidence 3467788996 9999998864 469999999999996555 53 654 5568999999999999999843 24
Q ss_pred chhhhcHHHHHHhhcCCcCeEEEEEEecccCCCcc-c--eeeeecCccchhhhhcccccccc-cCCCCcEEEEEecC--C
Q 022185 108 ENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLSVYADMSLTCKEY-YNPNQSMLELVFAP--A 181 (301)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~~-~~~g~~~l~~~~~~--~ 181 (301)
+ +|..+.++++++.|.+..|+++.|++++|... + ..+.......+.+. .+..+ .+.+..++...+.+ +
T Consensus 418 p--LP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~----~~~~~~~~~ggpvLvafv~G~~A 491 (738)
T PLN02529 418 E--LPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFF----LFYGYHTVSGGPALVALVAGEAA 491 (738)
T ss_pred C--CCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEE----EEecCCCCCCCCEEEEEECchhh
Confidence 3 25567788999999999999999999988531 1 11111110000000 00001 11233444433332 3
Q ss_pred CccCCCChHHHHHHHHHHHHHhCCC--CccccccCceEEEEEEeecCCcceec-CCCCCC-CCCCCCCC-CCCeEEeecc
Q 022185 182 EEWISCSDSEIIDATMKELAKLFPD--EISADQSKAKIVKYHVVKTPRSVYKT-IPNCEP-CRPLQRSP-VEGFYLAGDY 256 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~p-~~~l~~aGd~ 256 (301)
..+..++++++.+.+++.|+++|+. ...++.......+|...++-++.|.+ .++... .......| .++|||||++
T Consensus 492 ~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEa 571 (738)
T PLN02529 492 QRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEA 571 (738)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHH
Confidence 4577889999999999999999963 11010011111122222222233433 223211 11122344 4799999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 022185 257 TKQKYLASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 257 ~~~~~~~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
++..|+++|+||++||.+||++|++.+..
T Consensus 572 Ts~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 572 TTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred HhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987654
No 16
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.90 E-value=2.2e-22 Score=193.51 Aligned_cols=240 Identities=19% Similarity=0.229 Sum_probs=158.7
Q ss_pred eEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhh----cCCc
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLPE 108 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~----l~~~ 108 (301)
..+++.||+ ++|+++|++.| +|+++++|++|.+.++| |. | +.+|++++||+||+|+|++++++ +.|+
T Consensus 428 ~~~~v~GG~-~~Li~aLa~~L-----~I~ln~~V~~I~~~~dg-V~-V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 428 DHCFIPGGN-DTFVRELAKDL-----PIFYERTVESIRYGVDG-VI-V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred eEEEECCcH-HHHHHHHHhhC-----CcccCCeeEEEEEcCCe-EE-E-EeCCeEEEcCEEEECCCHHHHhhcccccCCC
Confidence 467788997 99999999876 49999999999996555 43 5 45788899999999999999984 2344
Q ss_pred hhhhcHHHHHHhhcCCcCeEEEEEEecccCCCcc-c--eeeeecCccchhhhhcccccccc-cCCCCcEEEEEecC--CC
Q 022185 109 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-D--HLLFSRSSLLSVYADMSLTCKEY-YNPNQSMLELVFAP--AE 182 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~~-~~~g~~~l~~~~~~--~~ 182 (301)
+|..+.++++++.|..+.|+++.|++++|... + +.+..+....+.+. .+.++ ...+..++..++.+ +.
T Consensus 499 --LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~----lf~s~s~~~G~~vLvafv~G~~A~ 572 (808)
T PLN02328 499 --LPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFF----LFYSYSSVSGGPLLIALVAGDAAV 572 (808)
T ss_pred --CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEE----EEecCCCCCCCcEEEEEecChhhH
Confidence 25567888999999999999999999998631 1 12222211111100 01111 12233454444333 34
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCC--CccccccCceEEEEEEeecCCcceec-CCCCCC-CCCCCCCCC--CCeEEeecc
Q 022185 183 EWISCSDSEIIDATMKELAKLFPD--EISADQSKAKIVKYHVVKTPRSVYKT-IPNCEP-CRPLQRSPV--EGFYLAGDY 256 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~p~--~~l~~aGd~ 256 (301)
.+..++++++++.+++.|+++|+. ...++.....+.+|...++-++.|.. .+|... ..+.+..|+ ++|||||++
T Consensus 573 ~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEa 652 (808)
T PLN02328 573 KFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEA 652 (808)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhh
Confidence 567889999999999999999963 11011111122222222222344532 344321 122233443 589999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHhhhhh
Q 022185 257 TKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 287 (301)
Q Consensus 257 ~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~ 287 (301)
++..|+++|+||++||.++|++|++.+...+
T Consensus 653 Ts~~~~GtVhGAi~SGlRAA~eIl~~~~~~~ 683 (808)
T PLN02328 653 TNKQYPATMHGAFLSGMREAANILRVARRRS 683 (808)
T ss_pred HhCCCCeEhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9988889999999999999999999875554
No 17
>PLN02268 probable polyamine oxidase
Probab=99.90 E-value=1.3e-22 Score=187.50 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=154.3
Q ss_pred eeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhc-C--Cchhh
Q 022185 35 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-L--PENWK 111 (301)
Q Consensus 35 ~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l-~--~~~~~ 111 (301)
.++.+|+ ++++++|.+ +.+|+++++|++|..++++ +. |++.+|+++.||+||+|+|++++++. + .+. +
T Consensus 194 ~~~~~G~-~~l~~~l~~-----~~~i~~~~~V~~i~~~~~~-v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~-l 264 (435)
T PLN02268 194 GLMVRGY-DPVINTLAK-----GLDIRLNHRVTKIVRRYNG-VK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPE-L 264 (435)
T ss_pred eeecCCH-HHHHHHHhc-----cCceeCCCeeEEEEEcCCc-EE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCC-C
Confidence 4567786 888887764 5689999999999996555 64 78878888999999999999998753 2 222 2
Q ss_pred hcHHHHHHhhcCCcCeEEEEEEecccCCCccc--eeeeecCccchhhhhcccccccccCCCCcEEEEEecC--CCccCCC
Q 022185 112 EMAYFKRLEKLVGVPVINIHIWFDRKLKNTYD--HLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISC 187 (301)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~--~~~~~~~ 187 (301)
|..+.++++++.|....|+++.|++++|.... ..+.+... .+. ..+ ......+..++.+.+.+ +..+.++
T Consensus 265 p~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~~~--~~~-~~~---~~~~~~g~~~l~~~~~g~~a~~~~~~ 338 (435)
T PLN02268 265 PEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPTSY--GCS-YFL---NLHKATGHPVLVYMPAGRLARDIEKL 338 (435)
T ss_pred CHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCCCC--Cce-EEE---ecccCCCCCEEEEEeccHHHHHHHhC
Confidence 44567778889998899999999999885321 11111100 000 000 00012334455443333 3456788
Q ss_pred ChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCC--ccee-cCCCCC-CCCCCCCCCCCCeEEeeccccCCCCC
Q 022185 188 SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYK-TIPNCE-PCRPLQRSPVEGFYLAGDYTKQKYLA 263 (301)
Q Consensus 188 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~g~~-~~~~~~~~p~~~l~~aGd~~~~~~~~ 263 (301)
+++++.+.++++|.++||....+ .......+...|+ +.|. ..||.. ...+.+..|+++|||||++++..+++
T Consensus 339 ~~~e~~~~v~~~L~~~~~~~~~p----~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g 414 (435)
T PLN02268 339 SDEAAANFAMSQLKKMLPDATEP----VQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPG 414 (435)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCc----cEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccc
Confidence 99999999999999999864311 1122122222333 2342 245532 22334567889999999999998889
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q 022185 264 SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 264 ~v~gA~~SG~~aA~~i~~~~ 283 (301)
+|+||++||++||++|++.+
T Consensus 415 ~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 415 SVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998753
No 18
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.90 E-value=3.4e-22 Score=186.12 Aligned_cols=232 Identities=19% Similarity=0.239 Sum_probs=165.3
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCchhhhc
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEM 113 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~ 113 (301)
+..+.||+ ++|+++|++.|. .++|+++++|++|+.++++ +. |++.+|++++||+||+|+|++++.+++++. +.
T Consensus 217 ~~~~~gG~-~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~-~~-v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~--~~ 289 (462)
T TIGR00562 217 FQTLATGL-ETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSN-YT-LELDNGVTVETDSVVVTAPHKAAAGLLSEL--SN 289 (462)
T ss_pred eEecchhH-HHHHHHHHHHhc--cCeEEcCCeEEEEEecCCc-EE-EEECCCcEEEcCEEEECCCHHHHHHHhccc--CH
Confidence 56689996 999999999984 3789999999999986444 53 777788889999999999999999998763 34
Q ss_pred HHHHHHhhcCCcCeEEEEEEecccCCC-cccee--eeecC---ccchhhhhcccccccccCCCCcEEEEEecC--CCccC
Q 022185 114 AYFKRLEKLVGVPVINIHIWFDRKLKN-TYDHL--LFSRS---SLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWI 185 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~--~~~~~---~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~--~~~~~ 185 (301)
...+++.++.|.++.++.+.|+++++. ....+ +.+.. +..+++.+. ...+...|.+.+++.+++.. ...+.
T Consensus 290 ~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s-~~~p~~~p~g~~~l~~~~~g~~~~~~~ 368 (462)
T TIGR00562 290 SASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTS-KLFPNRAPPGKTLLTAYIGGATDESIV 368 (462)
T ss_pred HHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEc-cccCCcCCCCcEEEEEEeCCCCCcccc
Confidence 567778899999999999999876543 11221 22221 122222222 22344455555555554433 24566
Q ss_pred CCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCC----CCCCCCCCeEEeeccccCCC
Q 022185 186 SCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRP----LQRSPVEGFYLAGDYTKQKY 261 (301)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~p~~~l~~aGd~~~~~~ 261 (301)
+++++++++.++++|.++++... .+....+.+|+++.+.+.+|+....+ ....+.++|++||||+..
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~~-------~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g-- 439 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNINN-------EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG-- 439 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCC-------CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC--
Confidence 78999999999999999996321 24556677888876666666532111 122335799999999864
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 022185 262 LASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 262 ~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++++|+.||+.+|++|++.+
T Consensus 440 -~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 440 -VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred -CcHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999998765
No 19
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.89 E-value=2.5e-21 Score=181.46 Aligned_cols=260 Identities=18% Similarity=0.293 Sum_probs=171.6
Q ss_pred CCccccHHHHHHHHHHHhhccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEE
Q 022185 9 NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVI 88 (301)
Q Consensus 9 ~~e~~sa~~~~~~~~~~~~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~ 88 (301)
++++.++......+.. ......+++.||+ ..++++|.+.++++|++|+++++|++|..+ ++++.+|++.+|+++
T Consensus 200 p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~-~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~ 273 (493)
T TIGR02730 200 PADQTPMINAGMVFSD----RHYGGINYPKGGV-GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKI 273 (493)
T ss_pred CcccchhhhHHHhhcc----cccceEecCCChH-HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEE
Confidence 4566666544333321 1123568899996 999999999999999999999999999984 566778999889889
Q ss_pred ecCEEEEccChh-hHhhcCCchhhhcHHHHHHhhcCCc-CeEEEEEEecccCCC---ccceeeeecC-ccc----hhh-h
Q 022185 89 DGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVGV-PVINIHIWFDRKLKN---TYDHLLFSRS-SLL----SVY-A 157 (301)
Q Consensus 89 ~ad~VI~a~p~~-~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~---~~~~~~~~~~-~~~----~~~-~ 157 (301)
+||.||+|++++ ++.+|++....+......+++++++ +.+++++.++++... ...+.++.+- ... .++ .
T Consensus 274 ~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~ 353 (493)
T TIGR02730 274 YAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVS 353 (493)
T ss_pred EcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEE
Confidence 999999998765 4557876543333333344566654 588999999875421 1122232110 000 001 1
Q ss_pred hcccccccccCCCCcEEEEEe-cCCCccCCC-------ChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcc
Q 022185 158 DMSLTCKEYYNPNQSMLELVF-APAEEWISC-------SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV 229 (301)
Q Consensus 158 ~~s~~~~~~~~~g~~~l~~~~-~~~~~~~~~-------~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 229 (301)
..|...++.+|+|++++.+.. .+...|.++ .++++.+++++.|++++|++. +.+.+....+|...
T Consensus 354 ~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~-------~~I~~~~~~TP~t~ 426 (493)
T TIGR02730 354 IPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLD-------SAIDYKEVGTPRTH 426 (493)
T ss_pred eCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChh-------hcEEEEEeeCchhH
Confidence 123345667888888765433 222334322 246688999999999999875 23444555566542
Q ss_pred --eecCCCC----C-------CCC-CCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 230 --YKTIPNC----E-------PCR-PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 230 --~~~~~g~----~-------~~~-~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
|...++. . ..+ |..++|++|||+||+++.+| +|+.||+.||+.+|+.|++++
T Consensus 427 ~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 427 RRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG--QGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred HHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC--CCHHHHHHHHHHHHHHHHhhc
Confidence 2111110 0 012 34578999999999999886 799999999999999998764
No 20
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.89 E-value=5.3e-22 Score=184.80 Aligned_cols=259 Identities=17% Similarity=0.156 Sum_probs=170.8
Q ss_pred cccCCCCccccHHHHHHHHHH-----------Hhh------ccCCceEeeecCCCcccchHHHHHHHHHcCcEEEeccee
Q 022185 4 ALNFINPDELSMQCILIALNR-----------FLQ------EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 66 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~~~~~-----------~~~------~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V 66 (301)
+.+..+++++|+...+..+.. +.. ...+..+.+++||+ ++|+++|++.|++ ++|+++++|
T Consensus 171 ~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~--~~i~~~~~V 247 (463)
T PRK12416 171 GVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGL-STIIDRLEEVLTE--TVVKKGAVT 247 (463)
T ss_pred ccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCH-HHHHHHHHHhccc--ccEEcCCEE
Confidence 456778999998643222111 000 01233567889997 9999999999853 689999999
Q ss_pred eEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCC-ccc--
Q 022185 67 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN-TYD-- 143 (301)
Q Consensus 67 ~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~-- 143 (301)
++|+.++++ + .|++.+|+++.||.||+|+|++++.+|+++. +....+.++.+.++.++++.|+++.+. ...
T Consensus 248 ~~I~~~~~~-~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~ 321 (463)
T PRK12416 248 TAVSKQGDR-Y-EISFANHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYLGFDILDEQLPADGT 321 (463)
T ss_pred EEEEEcCCE-E-EEEECCCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEEEechhhcCCCCCce
Confidence 999986444 5 4777788889999999999999999887642 223446777888999999999876432 111
Q ss_pred eeeeecC-cc--chhhhhcccccccccCCCCcEEEE-Eec----CCCccCCCChHHHHHHHHHHHHHhCCCCccccccCc
Q 022185 144 HLLFSRS-SL--LSVYADMSLTCKEYYNPNQSMLEL-VFA----PAEEWISCSDSEIIDATMKELAKLFPDEISADQSKA 215 (301)
Q Consensus 144 ~~~~~~~-~~--~~~~~~~s~~~~~~~~~g~~~l~~-~~~----~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 215 (301)
..+.++. +. .++. ..|..++...+ +..++.. ++. ..+.+.+++++++.+.++++|+++|+...
T Consensus 322 G~l~~~~~~~~~~~~~-~~s~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~------- 392 (463)
T PRK12416 322 GFIVTENSDLHCDACT-WTSRKWKHTSG-KQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG------- 392 (463)
T ss_pred EEEeeCCCCCeEEEEE-eecCCCCCcCC-CCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC-------
Confidence 1222222 11 1111 12222333233 3344443 332 12346778999999999999999997432
Q ss_pred eEEEEEEeecCCcceecCCCCCC----CCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 216 KIVKYHVVKTPRSVYKTIPNCEP----CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++....+.+|..+.+.+..++.. .++....+.++||+||+++.. .++++|+.||+++|++|++.+
T Consensus 393 ~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 393 EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHHHHHHHHHHHHHHh
Confidence 34556677776655444444321 111223345799999999875 589999999999999998764
No 21
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.89 E-value=6.7e-22 Score=183.49 Aligned_cols=257 Identities=18% Similarity=0.214 Sum_probs=171.3
Q ss_pred cccCCCCccccHHHHHHHHHHHh-----------h----c--cCCceEeeecCCCcccchHHHHHHHHHcCcEEEeccee
Q 022185 4 ALNFINPDELSMQCILIALNRFL-----------Q----E--KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 66 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~~~~~~~-----------~----~--~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V 66 (301)
+++..+++++|+...+..+..+. . . ..+....+++||+ ++++++|++.+++. +|+++++|
T Consensus 166 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~l~~~l~~~l~~~--~i~~~~~V 242 (451)
T PRK11883 166 GIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGL-QSLIEALEEKLPAG--TIHKGTPV 242 (451)
T ss_pred eeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHH-HHHHHHHHHhCcCC--eEEeCCEE
Confidence 45677899999986543222110 0 0 1234567789996 99999999988432 89999999
Q ss_pred eEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccC-CCcc-ce
Q 022185 67 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKL-KNTY-DH 144 (301)
Q Consensus 67 ~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~~ 144 (301)
++|+.++++ + .|++.+|++++||.||+|+|++++.+++.+. +..+.++++.+.++.++++.+++++ +... ..
T Consensus 243 ~~i~~~~~~-~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~ 316 (451)
T PRK11883 243 TKIDKSGDG-Y-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVALAFPESATNLPDGTG 316 (451)
T ss_pred EEEEEcCCe-E-EEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEEEeccccCCCCCceE
Confidence 999986443 5 3777788889999999999999999886542 3456678889999999999999874 2221 12
Q ss_pred eeee-cCc--cchhhhhcccccccccCCCCcEEEEEec-CCC-ccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEE
Q 022185 145 LLFS-RSS--LLSVYADMSLTCKEYYNPNQSMLELVFA-PAE-EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVK 219 (301)
Q Consensus 145 ~~~~-~~~--~~~~~~~~s~~~~~~~~~g~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~ 219 (301)
.++. +.+ +.++.. .+...+...|++..++.+++. +.. ...+.+++++++.+++.|+++++... ....
T Consensus 317 ~~~~~~~~~~~~~~~~-~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~-------~~~~ 388 (451)
T PRK11883 317 FLVARNSDYTITACTW-TSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITG-------DPEF 388 (451)
T ss_pred EEecCCCCCcEEEEEe-EcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCCC-------CceE
Confidence 3333 221 222211 122233444555555444432 222 23567899999999999999996422 2234
Q ss_pred EEEeecCCcceecCCCCCCC----CCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 220 YHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~~~----~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
..+.+|.++.+.+.+++... ++.... ++|||+||+|+.. .++++|+.||+++|++|++
T Consensus 389 ~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 389 TIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred EEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 55666666654445554221 222222 5799999999863 6899999999999999975
No 22
>PRK07208 hypothetical protein; Provisional
Probab=99.88 E-value=3.5e-21 Score=180.04 Aligned_cols=270 Identities=16% Similarity=0.193 Sum_probs=179.9
Q ss_pred cccCCCCccccHHHHHH---------HHHHHhhc----------c---CCceEeeecCCCcccchHHHHHHHHHcCcEEE
Q 022185 4 ALNFINPDELSMQCILI---------ALNRFLQE----------K---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 61 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~---------~~~~~~~~----------~---~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~ 61 (301)
+++..+++++|+.+++. .+...+.. . ....+.||+||+ ++|+++|++.|++.|++|+
T Consensus 158 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~-~~l~~~L~~~l~~~g~~i~ 236 (479)
T PRK07208 158 KVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGP-GQLWETAAEKLEALGGKVV 236 (479)
T ss_pred hhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCc-chHHHHHHHHHHHcCCEEE
Confidence 45788999999986431 12111111 0 014678899996 9999999999999999999
Q ss_pred ecceeeEEEecCCCcEEEEEEe--CCc--EEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEeccc
Q 022185 62 LNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK 137 (301)
Q Consensus 62 l~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 137 (301)
++++|++|+.++++.+..++.. +|+ ++.||.||+|+|++.+.+++++.. +....+.+.++.+.+++++++.++++
T Consensus 237 ~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~~-~~~~~~~~~~l~~~~~~~v~l~~~~~ 315 (479)
T PRK07208 237 LNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPPP-PPEVRAAAAGLRYRDFITVGLLVKEL 315 (479)
T ss_pred eCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCCC-CHHHHHHHhCCCcceeEEEEEEecCC
Confidence 9999999999655544334432 353 588999999999998888776432 33555667788888888999999877
Q ss_pred CCCccceeee-ecCcc-chhhhhcccccccccCCCCc-EEEEEe--cCCCccCCCChHHHHHHHHHHHHHhCCCCccccc
Q 022185 138 LKNTYDHLLF-SRSSL-LSVYADMSLTCKEYYNPNQS-MLELVF--APAEEWISCSDSEIIDATMKELAKLFPDEISADQ 212 (301)
Q Consensus 138 ~~~~~~~~~~-~~~~~-~~~~~~~s~~~~~~~~~g~~-~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 212 (301)
..... .+++ .+... .......+...+...|+|.+ .+.+.+ .......+++++++++.++++|.++.+ +.
T Consensus 316 ~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~---- 389 (479)
T PRK07208 316 NLFPD-NWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IR---- 389 (479)
T ss_pred CCCCC-ceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CC----
Confidence 54332 2333 22111 11111122233445566654 332222 223344478999999999999999743 21
Q ss_pred cCceEEEEEEeecCCcceecCCCCCCCCCC---CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 213 SKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
...++...+.+++.+.+.+.+++....+. ..++.+|||+||++....| .++++|+.||..+|++|++..
T Consensus 390 -~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 390 -PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred -hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhHHHHHHHHHHHHHhcCC
Confidence 23566777778877765555554321111 2355789999999876665 589999999999999998873
No 23
>PLN02576 protoporphyrinogen oxidase
Probab=99.88 E-value=1.1e-21 Score=184.22 Aligned_cols=242 Identities=18% Similarity=0.222 Sum_probs=158.5
Q ss_pred eEeeecCCCcccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEe--CC-cEEecCEEEEccChhhHhhcCCc
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT--NG-NVIDGDAYVFATPVDILKLQLPE 108 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~--~g-~~~~ad~VI~a~p~~~l~~l~~~ 108 (301)
....++||+ ++|+++|++.+ + ++|++|++|++|+..+++.+ .|++. +| ++++||+||+|+|++++.+++++
T Consensus 230 ~~~~~~gG~-~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~ 304 (496)
T PLN02576 230 TVGSFRGGL-QTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGY-SLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP 304 (496)
T ss_pred eeEeccchH-HHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcE-EEEEecCCCceeEEeCEEEECCCHHHHHHHhcc
Confidence 456679996 99999999887 4 68999999999998655423 24433 45 46899999999999999999875
Q ss_pred hhhhcHHHHHHhhcCCcCeEEEEEEecccCCCc-------cce--eeeec-Cc--cchhhhhcccccccccCCCCcEEEE
Q 022185 109 NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDH--LLFSR-SS--LLSVYADMSLTCKEYYNPNQSMLEL 176 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~--~~~~~-~~--~~~~~~~~s~~~~~~~~~g~~~l~~ 176 (301)
. +....+.+.++.|.++.++++.|++++|.. ... .+... .+ ..++.. .|...+...|++..++..
T Consensus 305 ~--~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~-~s~~~p~~~~~~~~~l~~ 381 (496)
T PLN02576 305 K--SPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIY-SSSLFPDRAPEGRVLLLN 381 (496)
T ss_pred c--CHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEe-ecCcCCCCCCCCCEEEEE
Confidence 3 234567788899999999999998876532 111 11111 11 111111 112233334444334433
Q ss_pred EecC--CCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCC---CCC--CC
Q 022185 177 VFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EG 249 (301)
Q Consensus 177 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~p~--~~ 249 (301)
++.+ ...+.+++++++++.++++|.++++.... .......+.+|+.+.+.+.+|+....+... ... +|
T Consensus 382 ~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~-----~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~ 456 (496)
T PLN02576 382 YIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGA-----PPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPG 456 (496)
T ss_pred EECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCC-----CCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 3332 34567789999999999999999974320 011222355666665555556532111111 112 69
Q ss_pred eEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhcCC
Q 022185 250 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAARGK 291 (301)
Q Consensus 250 l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~~~~ 291 (301)
||+||||+.. .++++|+.||+++|++|+..+. ..+++|
T Consensus 457 l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~-~~~~~~ 494 (496)
T PLN02576 457 LFLGGNYRGG---VALGKCVESGYEAADLVISYLE-SSAYKK 494 (496)
T ss_pred EEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh-hccccc
Confidence 9999999985 5899999999999999998764 344443
No 24
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.5e-20 Score=169.51 Aligned_cols=281 Identities=37% Similarity=0.502 Sum_probs=213.2
Q ss_pred CCccccCCCCccccHHHHHHHHHHHhhcc-CCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecC---CCc
Q 022185 1 MSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND---DGT 76 (301)
Q Consensus 1 ~~~~~~~~~~e~~sa~~~~~~~~~~~~~~-~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~---~g~ 76 (301)
|+.++.|.++|.+|+.+++..+.+|+... ++.....++|+..+.+..++.+.|++.|.+++.+++|++|..+. +..
T Consensus 172 ~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~ 251 (485)
T COG3349 172 IALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAK 251 (485)
T ss_pred HHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccc
Confidence 46788999999999999998888875444 66667778888889999999999999999999999999999865 334
Q ss_pred EEEEEEeCCc---EEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCc--------ccee
Q 022185 77 VKNFLLTNGN---VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT--------YDHL 145 (301)
Q Consensus 77 v~~V~~~~g~---~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~ 145 (301)
++++... +. ...++.++.+...+.+...+|.++.+...++.+..++..+..+++++++...+.. .++.
T Consensus 252 ~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~ 330 (485)
T COG3349 252 VTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNL 330 (485)
T ss_pred eEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccccccchhhhhhcc
Confidence 6667664 42 3456677777777788877887664445566677777889999999998643321 1111
Q ss_pred eeecCccchhhhhcccccccccCCCC-cEEEEEecCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEee
Q 022185 146 LFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVK 224 (301)
Q Consensus 146 ~~~~~~~~~~~~~~s~~~~~~~~~g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 224 (301)
.++..+..+.+.+....++.+..++. ..+..++.++.+|...+++++.....+.+...+|.... .+ .+.+++.
T Consensus 331 ~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~-----a~-~~~~~i~ 404 (485)
T COG3349 331 LWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAE-----AK-LKSSVLV 404 (485)
T ss_pred ccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhc-----cc-cccccee
Confidence 13333333334344434445555554 45556667777888888999999999999988887642 22 5566778
Q ss_pred cCCcceecCCCCCCCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhh
Q 022185 225 TPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAA 288 (301)
Q Consensus 225 ~~~~~~~~~~g~~~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~ 288 (301)
.+.+.+...||...+||...+|++|++++|||+...+-++||+|..||++||+.|++..+...+
T Consensus 405 ~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 405 NQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred ccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhhcCc
Confidence 8888888899998999999999999999999998877789999999999999999987765443
No 25
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.83 E-value=2.1e-19 Score=162.63 Aligned_cols=256 Identities=20% Similarity=0.257 Sum_probs=178.4
Q ss_pred cccCCCCccccHHHHHHHHHHHh-----------hc--c----CCceEeeecCCCcccchHHHHHHHHHcCcEEEeccee
Q 022185 4 ALNFINPDELSMQCILIALNRFL-----------QE--K----HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 66 (301)
Q Consensus 4 ~~~~~~~e~~sa~~~~~~~~~~~-----------~~--~----~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V 66 (301)
+-+..+.+.+|+....-.+.+-. .. . ....+.+++||+ ++|+++|++.++.+ |+++++|
T Consensus 160 giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~-~~l~~al~~~l~~~---i~~~~~V 235 (444)
T COG1232 160 GIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGL-QSLIEALAEKLEAK---IRTGTEV 235 (444)
T ss_pred chhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccH-HHHHHHHHHHhhhc---eeeccee
Confidence 34567889999983332222210 00 0 013588899997 99999999999654 9999999
Q ss_pred eEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCchhhhcHHHHHHhhcCCcCeEEEEEEeccc----CCCcc
Q 022185 67 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRK----LKNTY 142 (301)
Q Consensus 67 ~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 142 (301)
++|....++ . ++++.+|+.++||.||+|+|++.+.+++++. ...+...++.+.+++++.+.++++ +..++
T Consensus 236 ~~i~~~~~~-~-~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~ 309 (444)
T COG1232 236 TKIDKKGAG-K-TIVDVGGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYTSVVTVVVGLDEKDNPALPDGY 309 (444)
T ss_pred eEEEEcCCc-c-EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhccccceEEEEEEeccccccCCCCce
Confidence 999995334 3 3666688889999999999999999999872 234456778888899999999876 22222
Q ss_pred ceeeeecCc-cchhhhhcccccccccCCCCcEEEEEecC-CC-ccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEE
Q 022185 143 DHLLFSRSS-LLSVYADMSLTCKEYYNPNQSMLELVFAP-AE-EWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVK 219 (301)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~g~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~ 219 (301)
+..+-+..+ ..++. ..|..+|...|.|.+++.+.+.. .+ ....++||++++.++++|.++++...+ .+.
T Consensus 310 g~~iad~~~~~~a~~-~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~-------~~~ 381 (444)
T COG1232 310 GLLIADDDPYILAIT-FHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGD-------PVF 381 (444)
T ss_pred EEEEecCCCcceeEE-EecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcc-------hhh
Confidence 222224444 33332 34445665556666777665533 22 335678999999999999999987642 236
Q ss_pred EEEeecCCcceecCCCCCC----CCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 022185 220 YHVVKTPRSVYKTIPNCEP----CRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~~----~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~ 280 (301)
+++.|++++.+.+.+|+.. .+..+..-.++|+.+|.|... -+++.|+.+|..+|++|+
T Consensus 382 ~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 382 VEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred eeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHHHHHhh
Confidence 6788888888777788643 223333223799999988754 389999999999999886
No 26
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=2.1e-19 Score=166.14 Aligned_cols=236 Identities=27% Similarity=0.360 Sum_probs=166.1
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhh--c--CCch
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--Q--LPEN 109 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~--l--~~~~ 109 (301)
.....+|+ ..++.+++. |.+|++++.|.+|.+.+++.+ .+++.++..+++|+||+++|+.+++. + .|+
T Consensus 211 ~~~~~~G~-~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~~-~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~- 282 (501)
T KOG0029|consen 211 HLLMKGGY-EPVVNSLAE-----GLDIHLNKRVRKIKYGDDGAV-KVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPP- 282 (501)
T ss_pred hhHhhCCc-cHHHhhcCC-----CcceeeceeeEEEEEecCCce-EEEEECCCeeEeeEEEEEccHHHhccCceeeCCC-
Confidence 35567886 888777775 899999999999999877753 35666666699999999999999976 3 233
Q ss_pred hhhcHHHHHHhhcCCcCeEEEEEEecccCCCccceeeee---cCc-cch--hhhhcccccccccCCCCcEEEEEecC--C
Q 022185 110 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS---RSS-LLS--VYADMSLTCKEYYNPNQSMLELVFAP--A 181 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~-~~~--~~~~~s~~~~~~~~~g~~~l~~~~~~--~ 181 (301)
+|..+.++++++......++.+.|++.+|.. +...|. ... ..+ .+.+.. +. .+..++.....+ +
T Consensus 283 -Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~-~~d~fg~~~~~~~~~~~~~f~~~~---~~---~~~~~l~~~~~~~~a 354 (501)
T KOG0029|consen 283 -LPRWKQEAIDRLGFGLVNKVILEFPRVFWDQ-DIDFFGIVPETSVLRGLFTFYDCK---PV---AGHPVLMSVVVGEAA 354 (501)
T ss_pred -CcHHHHHHHHhcCCCceeEEEEEeccccCCC-CcCeEEEccccccccchhhhhhcC---cc---CCCCeEEEEehhhhh
Confidence 3557788899999988999999999999952 222221 111 111 111111 11 122344333333 4
Q ss_pred CccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecC-CCCCCCC-CCCCCCCCC-eEEeecccc
Q 022185 182 EEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTI-PNCEPCR-PLQRSPVEG-FYLAGDYTK 258 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~p~~~-l~~aGd~~~ 258 (301)
..+.+++++++++.++..|+++|+....++.....+.+|.........|.+. ++..... ..+..|+.+ +||||++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~ 434 (501)
T KOG0029|consen 355 ERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATS 434 (501)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhc
Confidence 5678999999999999999999994333333555666666666666665432 2221111 234567777 999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhh
Q 022185 259 QKYLASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 259 ~~~~~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
..|+++|+||+.||.++|..|+..+..
T Consensus 435 ~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 435 RKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 27
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.1e-18 Score=153.35 Aligned_cols=243 Identities=20% Similarity=0.276 Sum_probs=162.1
Q ss_pred CceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh-hhHhhcCCch
Q 022185 31 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV-DILKLQLPEN 109 (301)
Q Consensus 31 ~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~-~~l~~l~~~~ 109 (301)
.....||.||| ..+.++|++.++++|++|.++++|.+|..+ +|++++|++.||+++++..||+++.+ .+..+|+|..
T Consensus 253 ~g~~~Yp~GG~-Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e 330 (561)
T KOG4254|consen 253 KGGWGYPRGGM-GAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGE 330 (561)
T ss_pred CCcccCCCCCh-hHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCc
Confidence 33568999997 999999999999999999999999999995 68999999999999999999997655 5667999887
Q ss_pred hhhcHHHHHHhhcCCc-CeEE----EEEEecccCCCc---cceeee-ecCccc---hhh----------------hhccc
Q 022185 110 WKEMAYFKRLEKLVGV-PVIN----IHIWFDRKLKNT---YDHLLF-SRSSLL---SVY----------------ADMSL 161 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~-~~~~----~~l~~~~~~~~~---~~~~~~-~~~~~~---~~~----------------~~~s~ 161 (301)
.+|+++ .++++++. ++.+ .++..+..-..+ ....+. ...+.. ..+ .-+|.
T Consensus 331 ~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 331 ALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSS 408 (561)
T ss_pred cCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccc
Confidence 667665 46666664 3332 444443211111 111111 111100 000 01223
Q ss_pred ccccccCCCCcEEEEEe--cCCCccCCCC-------hHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCc----
Q 022185 162 TCKEYYNPNQSMLELVF--APAEEWISCS-------DSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS---- 228 (301)
Q Consensus 162 ~~~~~~~~g~~~l~~~~--~~~~~~~~~~-------~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~---- 228 (301)
.++.++|+++|++.++. ++ ..|+..+ +++..+++++.+++++|++.+ ++... ..-+|..
T Consensus 409 lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss------sv~~~-dvgTP~t~qr~ 480 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS------SVESY-DVGTPPTHQRF 480 (561)
T ss_pred cCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccc------eEEEE-ecCCCchhhHH
Confidence 45667889999887653 33 3454332 467899999999999999863 33333 3344432
Q ss_pred ------ce-ecCCCCC---CCCCCC-----CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhhhc
Q 022185 229 ------VY-KTIPNCE---PCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLAAR 289 (301)
Q Consensus 229 ------~~-~~~~g~~---~~~~~~-----~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~~~ 289 (301)
.+ ....+.. -.+|.. ++|+++||+|||.+.++ ++|.++. |+.+|...+.+++.-.+-
T Consensus 481 l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~~~l 552 (561)
T KOG4254|consen 481 LGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLYSDL 552 (561)
T ss_pred hcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhHHHh
Confidence 22 1111111 134443 78999999999999997 7888885 999999988876654443
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.82 E-value=2.5e-19 Score=158.85 Aligned_cols=247 Identities=21% Similarity=0.257 Sum_probs=168.7
Q ss_pred eEeeecCCCcccchHHHHHHHHHc----C--cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhh--
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL-- 104 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~----g--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~-- 104 (301)
...+..-|| ..+.+-|++.+.+. | .+++++++|.+|+.+..++|+ |++.||+.++||+||||+++.++++
T Consensus 214 ~~~~~~kGy-~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h 291 (498)
T KOG0685|consen 214 LLIWNKKGY-KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVSLGVLKEQH 291 (498)
T ss_pred hheechhHH-HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEeechhhhhhh
Confidence 344556677 88888888877531 1 355566999999997667785 9999999999999999999999987
Q ss_pred --cCCchhhhcHHHHHHhhcCCcCeEEEEEEecccCCCc-cc--eeeeecCccch-------hhhhcccccccccCCCCc
Q 022185 105 --QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-YD--HLLFSRSSLLS-------VYADMSLTCKEYYNPNQS 172 (301)
Q Consensus 105 --l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~~-------~~~~~s~~~~~~~~~g~~ 172 (301)
+..+. +|..+.++|+++.++.+.|++|.|++|+|+. +. ..+|.+.+... +..++....+. ....+
T Consensus 292 ~~lF~P~-LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v--~~~~~ 368 (498)
T KOG0685|consen 292 HKLFVPP-LPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPV--SWAPN 368 (498)
T ss_pred hhhcCCC-CCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEc--Ccchh
Confidence 44333 3667889999999999999999999999964 22 23343333111 01111111111 11124
Q ss_pred EEEEEecC--CCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCC--cceec-CCCCCC--------C
Q 022185 173 MLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKT-IPNCEP--------C 239 (301)
Q Consensus 173 ~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~~--------~ 239 (301)
++...+.+ +...++++++++++.+...|+++++++.-| ...++++.++...|. +.|.+ .+|... .
T Consensus 369 vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP--~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p 446 (498)
T KOG0685|consen 369 VLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIP--KPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALP 446 (498)
T ss_pred hhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCC--CchhhhhhcccCCCccCceeeEeeccccccccchhhcc
Confidence 55544433 345678999999999999999999764322 234556656655554 44543 223211 1
Q ss_pred CCC-CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 240 RPL-QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 240 ~~~-~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
.|. ..++-+.|.|||++++..+..+++||+.||.+.|++|++.+...
T Consensus 447 ~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~ 494 (498)
T KOG0685|consen 447 LPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESS 494 (498)
T ss_pred CCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhh
Confidence 221 22345689999999998877899999999999999999966543
No 29
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.70 E-value=3.1e-17 Score=135.73 Aligned_cols=218 Identities=18% Similarity=0.178 Sum_probs=141.0
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-cEEecCEEEEccChhhHhhcCCch--hhhcHHHHHHhhc
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPEN--WKEMAYFKRLEKL 122 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~~l~~l~~~~--~~~~~~~~~~~~~ 122 (301)
+.+|++.| ....+|+++++|++|...+++ + .+.+++| +...+|.||+|+|++++..|+.+. -+|...+.++..+
T Consensus 107 msalak~L-AtdL~V~~~~rVt~v~~~~~~-W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V 183 (331)
T COG3380 107 MSALAKFL-ATDLTVVLETRVTEVARTDND-W-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADV 183 (331)
T ss_pred hHHHHHHH-hccchhhhhhhhhhheecCCe-e-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccc
Confidence 44666666 457799999999999997554 4 4888665 567999999999999998887431 2355577778889
Q ss_pred CCcCeEEEEEEecccCCCccceeeeecCccchhhhhcccccccccCCCCcEEEEEecC--CCccCCCChHHHHHHHHHHH
Q 022185 123 VGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKEL 200 (301)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l 200 (301)
.|-++..+.+.|..+...++.+.+.++.++.++-.+-|. +...|.+. +..+-.++ .+...+.++++.+..+....
T Consensus 184 ~y~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d~sK--~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~ 260 (331)
T COG3380 184 VYAPCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARDASK--KGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAA 260 (331)
T ss_pred eehhHHHHHhcCCccCCCCCCCcccCCCeeeeeeccccC--CCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhh
Confidence 999998888999877665544533344454333233221 11112222 22122222 23345667888787777777
Q ss_pred HHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHH
Q 022185 201 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR-SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 279 (301)
Q Consensus 201 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i 279 (301)
...++.-.+ .+.....++|+|+.+....+. +.+- .+--+||+||||++. +.+|||++||..+|++|
T Consensus 261 ~~~~~~~~~------~p~~s~~H~WrYA~P~~~~~~----~~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i 327 (331)
T COG3380 261 QELDGDRLP------EPDWSDAHRWRYAIPNDAVAG----PPLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHI 327 (331)
T ss_pred hhccCCCCC------cchHHHhhccccccccccccC----CccccCCCCceeeecccccC---cchhHHHhccHHHHHHH
Confidence 777763221 222334566667654322221 1111 233479999999987 68999999999999999
Q ss_pred HHH
Q 022185 280 VQD 282 (301)
Q Consensus 280 ~~~ 282 (301)
++.
T Consensus 328 ~~~ 330 (331)
T COG3380 328 LNG 330 (331)
T ss_pred Hhc
Confidence 875
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=1.5e-15 Score=141.71 Aligned_cols=238 Identities=21% Similarity=0.251 Sum_probs=140.7
Q ss_pred CCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCch
Q 022185 30 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 109 (301)
Q Consensus 30 ~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~ 109 (301)
...+..||+||| +.|+++|++.++++|++|+++++|++|.. ++|+.+++++.+|+.+++|.||++..+.....+.+..
T Consensus 212 ~~~G~~~p~GG~-~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~ 289 (487)
T COG1233 212 LSGGVFYPRGGM-GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEA 289 (487)
T ss_pred ccCCeeeeeCCH-HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhhh
Confidence 345689999997 99999999999999999999999999999 4666556777777778999999999985555555432
Q ss_pred hhhcHHHHHHhhcCC-cCeEEEEEEecccCCC-ccceeeeecC---ccchhh------------hhcccccccccCCCCc
Q 022185 110 WKEMAYFKRLEKLVG-VPVINIHIWFDRKLKN-TYDHLLFSRS---SLLSVY------------ADMSLTCKEYYNPNQS 172 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~~~~~~~---~~~~~~------------~~~s~~~~~~~~~g~~ 172 (301)
.. .+...+..+ .+.+..++.++..... ...+.++..+ .+...+ .-+|..+++++|+|++
T Consensus 290 ~~----~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~ 365 (487)
T COG1233 290 RR----PRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKH 365 (487)
T ss_pred hh----hccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCc
Confidence 10 011111111 1233455555543111 1112222111 011111 1233456778898876
Q ss_pred EEEEEe--cCCCccCCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCc--ceecCCC-----------C-
Q 022185 173 MLELVF--APAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRS--VYKTIPN-----------C- 236 (301)
Q Consensus 173 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-----------~- 236 (301)
.+...+ .+...+.+..++++.+. +..+++..|++++ .++... .-+|.. .+...++ +
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~------~iv~~~-~~tp~~~e~~~~~~~G~~~~~~~~~~q~ 437 (487)
T COG1233 366 STFAQLVPVPSLGDYDELKESLADA-IDALEELAPGLRD------RIVARE-VLTPLDLERYLGLPGGDIFGGAHTLDQL 437 (487)
T ss_pred ceeeeeeecCcCCChHHHHHHHHHH-HHHHhhcCCCccc------ceeEEE-EeChHHHHHhcCCCCCcccchhcChhhh
Confidence 222222 22112223334555555 6688899999862 333333 223331 1110111 1
Q ss_pred CCCCCCC-CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 237 EPCRPLQ-RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 237 ~~~~~~~-~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..+||.. ++|++|||+||+++++| +++.++..++...+..+....
T Consensus 438 ~~~rp~~~~t~i~~LYl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~~~ 483 (487)
T COG1233 438 GPFRPPPKSTPIKGLYLVGASTHPG--GGVPGVPGSAAAVALLIDLDR 483 (487)
T ss_pred cCCCCCCCCCCcCceEEeCCcCCCC--CCcchhhhhHHHHHhhhcccc
Confidence 1245543 48999999999999998 789998877777776665543
No 31
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.11 E-value=8.4e-10 Score=97.44 Aligned_cols=231 Identities=16% Similarity=0.154 Sum_probs=148.9
Q ss_pred eEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CCc-EEecCEEEEccChhhHhhcCCch
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDGDAYVFATPVDILKLQLPEN 109 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~~ad~VI~a~p~~~l~~l~~~~ 109 (301)
..+-.+||+ +.++++|.+.|.+..+.|.++-++..+.....|++. +.+. +++ ....+++..++|...+.++++..
T Consensus 240 ~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~-~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~ 317 (491)
T KOG1276|consen 240 TMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWS-LTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGL 317 (491)
T ss_pred chhhhhhhH-hHhHHHHHHHhcccchhhhcccccccccccccCCce-eEeEcCCCceeeeccccccccchHHhhhhcccc
Confidence 345568997 999999999999888999999999999986666442 4443 443 34556666799999999998764
Q ss_pred hhhcHHHHHHhhcCCcCeEEEEEEeccc-CC---Cccceeeeec----CccchhhhhcccccccccCCCCcEEEE-Eec-
Q 022185 110 WKEMAYFKRLEKLVGVPVINIHIWFDRK-LK---NTYDHLLFSR----SSLLSVYADMSLTCKEYYNPNQSMLEL-VFA- 179 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~g~~~l~~-~~~- 179 (301)
.......+.++.|.++..+++.|.++ .. .+|+..+-.. ....+++.|. ..++...+.+ .+++ ++.
T Consensus 318 --~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS-~~Fp~~~~s~--~vtvm~gg~ 392 (491)
T KOG1276|consen 318 --QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDS-MLFPDRSPSP--KVTVMMGGG 392 (491)
T ss_pred --chhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeec-ccCCCCCCCc--eEEEEeccc
Confidence 12345567889999999999999763 32 3676665421 1244554442 2334333322 3333 332
Q ss_pred CCCcc--CCCChHHHHHHHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCC----CC-CCCCCCeEE
Q 022185 180 PAEEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRP----LQ-RSPVEGFYL 252 (301)
Q Consensus 180 ~~~~~--~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~-~~p~~~l~~ 252 (301)
...++ ...+.+++++.+.++|.+++..-.. .....++-|+...+.+..|+..... .+ ..+-.+|++
T Consensus 393 ~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~-------P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l 465 (491)
T KOG1276|consen 393 GSTNTSLAVPSPEELVNAVTSALQKMLGISNK-------PVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFL 465 (491)
T ss_pred ccccCcCCCCCHHHHHHHHHHHHHHHhCCCCC-------cccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEe
Confidence 22233 3457899999999999999964331 1111122223333334455532111 11 223358999
Q ss_pred eeccccCCCCCchhHHHHHHHHHHHHHH
Q 022185 253 AGDYTKQKYLASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 253 aGd~~~~~~~~~v~gA~~SG~~aA~~i~ 280 (301)
+|.|... -++..+++||+.+|..++
T Consensus 466 ~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 466 GGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eccccCC---CChhHHHHhhHHHHHhhc
Confidence 9988875 489999999999998875
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.46 E-value=1.2e-06 Score=80.88 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=58.3
Q ss_pred ceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccC
Q 022185 32 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 98 (301)
Q Consensus 32 ~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p 98 (301)
..+.||.||+ +.|+++|++.++..|++++++++|++|+.+++|++.+|++.+|++++|+.||++..
T Consensus 222 ~p~~yp~gG~-g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 222 SPFIYPLYGL-GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CcceeeCCCH-HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 3568899996 89999999999999999999999999998656677789998999999999999644
No 33
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.38 E-value=5.4e-05 Score=67.39 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=55.2
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
.++.+.+|. +.+++..|.+.++++|++|+.+++|++|..+ ++.+.+|.+.+| +++||.||+|+.+..-
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 445566664 5688999999999999999999999999984 555767887677 7999999999988663
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.32 E-value=4.6e-06 Score=74.60 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=53.1
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+.++++|. +..+++.|.+.+++.|++|+.+++|++|..+ ++++.+|.+.+|+ +.||.||+|+.+..
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccc
Confidence 455566662 3789999999999999999999999999995 5557779998886 99999999988754
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.20 E-value=4.3e-06 Score=72.56 Aligned_cols=92 Identities=20% Similarity=0.128 Sum_probs=71.8
Q ss_pred eEee-ecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCchhh
Q 022185 33 KMAF-LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWK 111 (301)
Q Consensus 33 ~~~~-~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~~~~ 111 (301)
..++ +.|| +..-+++|.+.+ +++|.++++|++|..-.+|++ |+..+|++..+|.||+++-+.++..++++.
T Consensus 210 p~wrtV~gg-S~~yvq~laa~~---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~-- 281 (447)
T COG2907 210 PTWRTVAGG-SRAYVQRLAADI---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEP-- 281 (447)
T ss_pred CceeEcccc-hHHHHHHHhccc---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCC--
Confidence 4444 5788 688889998877 689999999999999888843 566679888999999999999988888763
Q ss_pred hcHHHHHHhhcCCcCeEEEEE
Q 022185 112 EMAYFKRLEKLVGVPVINIHI 132 (301)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~l 132 (301)
+.+..+.+.++.|+.+..++.
T Consensus 282 sp~e~qll~a~~Ys~n~aVlh 302 (447)
T COG2907 282 SPEERQLLGALRYSANTAVLH 302 (447)
T ss_pred CHHHHHHHHhhhhhhceeEEe
Confidence 224455778899976544443
No 36
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.11 E-value=0.00054 Score=62.89 Aligned_cols=198 Identities=13% Similarity=0.184 Sum_probs=102.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh--HhhcCCchhhhcHHHHHHhh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI--LKLQLPENWKEMAYFKRLEK 121 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~--l~~l~~~~~~~~~~~~~~~~ 121 (301)
.+...|++.++++|+++..+++|++|+..+++++.+|++.+| ++.++.||+++.... +.++++.. .+ +
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~-~~------~-- 253 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR-LP------I-- 253 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC-CC------c--
Confidence 456667788888999999999999998644555666888777 689999988877643 22322211 01 0
Q ss_pred cCCcCeEEEEEEecccCCCccceeeeecCccchhhhhcccccccccCC-CCcEEEE-EecCCCccCCCChHHHHHHHHHH
Q 022185 122 LVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNP-NQSMLEL-VFAPAEEWISCSDSEIIDATMKE 199 (301)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-g~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
. +. ...+.+.++........+...... .+ ..|. ++.++.. ............+.+..+.+++.
T Consensus 254 -~--~~-~~~~~~~~~~~~~~~~~~~~~~~~--~y---------~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 254 -E--SH-PLQALVSEPLKPIIDTVVMSNAVH--FY---------VSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred -C--cc-cceEEEecCCCCCcCCeEEeCCCc--eE---------EEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 0 10 111111222211111111111100 00 0111 1222211 11101122222345677888999
Q ss_pred HHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHH
Q 022185 200 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 279 (301)
Q Consensus 200 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i 279 (301)
+.+++|.+.. ..+... ..+.+...++..+..- ..|.+|+|++.-+.+ .|+..|-..|+..|+.|
T Consensus 319 ~~~~~P~l~~-----~~~~~~-----w~G~~~~t~D~~PiIg--~~~~~gl~~a~G~~g----~G~~~ap~~G~~la~li 382 (407)
T TIGR01373 319 ILEMFPILSR-----VRMLRS-----WGGIVDVTPDGSPIIG--KTPLPNLYLNCGWGT----GGFKATPASGTVFAHTL 382 (407)
T ss_pred HHHhCCCcCC-----CCeEEE-----eccccccCCCCCceeC--CCCCCCeEEEeccCC----cchhhchHHHHHHHHHH
Confidence 9999998742 122211 1233333444322110 223579999874443 35677777899999988
Q ss_pred HHH
Q 022185 280 VQD 282 (301)
Q Consensus 280 ~~~ 282 (301)
...
T Consensus 383 ~~~ 385 (407)
T TIGR01373 383 ARG 385 (407)
T ss_pred hCC
Confidence 754
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.11 E-value=0.00062 Score=62.62 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=50.8
Q ss_pred EeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 34 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 34 ~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
++++++|. +..++..|.+.++++|++|+++++|++|+.+ ++++.+|++.+| ++.||.||+++....
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 44555443 2477888999888899999999999999985 444555777555 789999999998754
No 38
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.90 E-value=6.7e-05 Score=70.66 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=71.7
Q ss_pred cCCCCccccHHHHHHHHHHHhhc----cCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEec-CC--CcEE
Q 022185 6 NFINPDELSMQCILIALNRFLQE----KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DD--GTVK 78 (301)
Q Consensus 6 ~~~~~e~~sa~~~~~~~~~~~~~----~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~-~~--g~v~ 78 (301)
.|+-.+..||..+..++.+|+.+ ...+.+.+.+..--+.|+.+|.+.|+++|++|+++++|++|..+ ++ ++|+
T Consensus 185 ~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vt 264 (576)
T PRK13977 185 MFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTAT 264 (576)
T ss_pred HHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEE
Confidence 36777999999999999998432 23444555443333899999999999999999999999999985 23 5688
Q ss_pred EEEEe-CCc-----EEecCEEEEccChhh
Q 022185 79 NFLLT-NGN-----VIDGDAYVFATPVDI 101 (301)
Q Consensus 79 ~V~~~-~g~-----~~~ad~VI~a~p~~~ 101 (301)
+|.+. +|+ ....|.||+|..--+
T Consensus 265 gI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 265 AIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred EEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 88775 332 246899999876533
No 39
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.83 E-value=0.0018 Score=58.94 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=52.8
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++++.+|. +..++.+|.+.+++ |++|+.+++|++|+.+ ++.+ .|++.+|+.++||.||+|+.++.
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEGW-QLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCeE-EEEeCCCCEEEcCEEEEcCCccc
Confidence 355666663 46788999999888 9999999999999984 4445 48887887789999999998765
No 40
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.64 E-value=0.0016 Score=59.69 Aligned_cols=67 Identities=28% Similarity=0.438 Sum_probs=47.3
Q ss_pred ceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 32 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 32 ~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
....||.-.-+..+++.|.+.+++.|++|+++++|++|...+++ +..|.+.+++++.||.||+|+.-
T Consensus 98 ~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 98 DGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp TTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEETTTEEEEESEEEE----
T ss_pred CCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeeccCcccccCCEEEEecCC
Confidence 35677765335889999999999999999999999999985444 55688866778999999999763
No 41
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.58 E-value=0.00031 Score=62.58 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=55.4
Q ss_pred CCceEeeec-CCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccC
Q 022185 30 HGSKMAFLD-GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 98 (301)
Q Consensus 30 ~~~~~~~~~-GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p 98 (301)
...+.-||. .. ++.|++.|.+.+++.|++|+++++|.+|+.++ . ...+.+.+|++++||.+|+|+.
T Consensus 98 ~~~Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~-~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 98 EDLGRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDD-S-GFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ccCceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecC-c-eEEEEcCCCCEEEccEEEEecC
Confidence 444566776 66 68999999999999999999999999999953 2 2348888888899999999886
No 42
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.58 E-value=0.0027 Score=57.93 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+.+.|.+.+++.|++|+.+++|++|+.+++ .+. |++.+|+++++|.||.+.....
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDAD-RVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-eEE-EEECCCCEEEeCEEEEecCCCc
Confidence 4667788888888999999999999998544 454 7777888899999999887643
No 43
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.53 E-value=0.022 Score=51.50 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=49.5
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..+.+.+|+ ...++..+.+.+.+.|++|+++++|++|..+ ++.+ .|++.+| ++++|.||+|+....
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDGV-TVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCeE-EEEeCCC-EEEeeEEEEecCcch
Confidence 344455554 3456677777777889999999999999985 4435 4777777 689999999998754
No 44
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.52 E-value=0.01 Score=54.36 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=41.5
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
-+-|++..++.|.+++.+++|+.+..++++.+. ++..++.+++|+.||.+..+.
T Consensus 98 d~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 98 DKWLAERAEEAGAELYPGTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred hHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcc
Confidence 344677777899999999999999997666443 333344689999999998653
No 45
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.50 E-value=0.0052 Score=57.44 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=49.1
Q ss_pred EeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 34 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 34 ~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
++.+.+|. +..++..|++.+++.|++|+.+++|++|+. ++ .+ .|++.+| +++||.||+|+....
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~~-~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-PA-VVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-ce-EEEeCCc-EEECCEEEEcccccc
Confidence 44455543 356789999999889999999999999986 23 24 4777667 689999999987653
No 46
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.48 E-value=0.027 Score=50.99 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=49.8
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++.+.+|. +..+...|.+.+++.|++++.+++|++|+.+ ++.+ .|++.+| ++.+|.||+++....
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence 344455554 3467888888888899999999999999984 4445 3777665 789999999988643
No 47
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.42 E-value=0.023 Score=49.34 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++.|++++++++|++|..+++ .+. +.+. +++++++|.||.+....
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~~-~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RVV-VIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EEE-EEEcCccEEEEeCEEEECCCcc
Confidence 4567788888888999999999999998544 343 4443 34679999999998874
No 48
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.41 E-value=0.013 Score=57.41 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=52.4
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++++.+|+ +..++.+|.+.+++ |++|+.+++|++|... ++.+. |++.+|+.+++|.||+++....
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCc
Confidence 456677764 35788889998888 9999999999999985 44454 7777777778999999988764
No 49
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.40 E-value=0.00053 Score=61.97 Aligned_cols=55 Identities=38% Similarity=0.578 Sum_probs=48.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+++.|.+.|++.|++|+++++|.+|+.. ++.+.+|.+.+|+++.+|+||+|+.-
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence 45889999999999999999999999995 55566788889999999999999864
No 50
>PRK06847 hypothetical protein; Provisional
Probab=97.40 E-value=0.0087 Score=54.20 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++.|++|+++++|++|+.+++ .+ .|++.+|+++++|.||.+....
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDD-GV-TVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EE-EEEEcCCCEEEcCEEEECcCCC
Confidence 4567777777778999999999999998543 35 3777788889999999998864
No 51
>PRK10015 oxidoreductase; Provisional
Probab=97.37 E-value=0.03 Score=51.88 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.|.+.+++.|++|+.+++|++|... ++++.+|.+ ++++++||.||.|....
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 3667777789999999999999874 455655554 45579999999998764
No 52
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.37 E-value=0.029 Score=51.54 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=48.5
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-----cEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~ 101 (301)
.++++.+|. ...++..|.+.+++.|++|+.+++|++|+.+ ++.+. +.+.++ .+++||.||+++.+..
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEE-EEEEcCCCCccceEecCEEEECCCcCh
Confidence 345555432 3466788889998899999999999999974 44343 444332 3689999999998764
No 53
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.36 E-value=0.029 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred cchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+.+.|.+.+++ .|++++++++|++|+.++++ +. |++.+|++++||.||.|...+-
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~-v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VR-VTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EE-EEECCCCEEEeeEEEEecCCCh
Confidence 467777777776 49999999999999985444 53 7777888899999999988753
No 54
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.30 E-value=0.033 Score=50.94 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++.|++|+.+++|++|+.+++ .+. |++.+|+++++|.||.+....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~-v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDE-GVT-VTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EEE-EEECCCCEEEeCEEEEcCCCC
Confidence 4677888888888999999999999998544 353 777788889999999998763
No 55
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.26 E-value=0.0012 Score=60.33 Aligned_cols=67 Identities=28% Similarity=0.363 Sum_probs=53.6
Q ss_pred EeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcE-EecCEEEEccChhh
Q 022185 34 MAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDI 101 (301)
Q Consensus 34 ~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~-~~ad~VI~a~p~~~ 101 (301)
.+.+.+|. ...++.+|++.++++|++|++|++|+.|+.+++| +..+.+.+|++ ++|+.||.+.....
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence 34444443 3467889999999999999999999999998776 44467778866 99999999998754
No 56
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.25 E-value=0.039 Score=49.98 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++.| ++|+.+++|++|+.++ +.+. |++.+|+++++|.||.+....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVE-LTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeE-EEECCCCEEEeeEEEEeCCCC
Confidence 46777888887777 9999999999999854 4453 777788889999999877653
No 57
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.18 E-value=0.017 Score=53.52 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 47 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 47 ~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..|.+..++.|++|+.+++|++|..+ ++++..+++ +|++++||.||.|....
T Consensus 112 ~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~-~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 112 AWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA-DGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc-CCcEEECCEEEEEeCCC
Confidence 34667777789999999999999874 555644543 66689999999998763
No 58
>PRK07045 putative monooxygenase; Reviewed
Probab=97.14 E-value=0.032 Score=50.81 Aligned_cols=57 Identities=21% Similarity=0.328 Sum_probs=44.5
Q ss_pred chHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
|.+.|.+.+.+ .|++|+++++|++|+.++++.++.|++.+|+++++|.||.+-...-
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 45556666643 5789999999999998766655557887888999999999887643
No 59
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.02 E-value=0.13 Score=47.22 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh-HhhcC
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~-l~~l~ 106 (301)
.+.+.|.+.+++.|++|+.+++|++|+.++++ +. |++.+|++++||.||.|..... +.+++
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WL-LTLADGRQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EE-EEECCCCEEEeCEEEEecCCCchhHHhc
Confidence 35567788887789999999999999986554 53 7777888899999999887643 44444
No 60
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.01 E-value=0.021 Score=52.05 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+.+.++..+++++|++|+.++++ +. |++.+|+++++|.||.|....
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~~-v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDE-VT-VTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-EE-EEECCCCEEEEeEEEEecCCC
Confidence 45777788877766555999999999985444 54 777788889999999887763
No 61
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.96 E-value=0.081 Score=48.21 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=42.7
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+-+.|.+.+++. |++|+.+++|++|..++++ + .|++.+|++++||.||.|....-
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-W-ELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-E-EEEECCCCEEEeCEEEEeCCCCc
Confidence 456677777665 8999999999999985443 4 37777888899999999887643
No 62
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.92 E-value=0.31 Score=44.33 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..+.+.|.+.+++.|++++ .++|+.+..++++.+ .|++.+|++++||.||.+.....
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALS-TVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCcee-EEEeCCCCEEEeCEEEECCCCch
Confidence 3566788888878888885 668999987534433 47777887899999999998864
No 63
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.90 E-value=0.0041 Score=57.64 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=50.1
Q ss_pred eecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecC-CCcEEEEEEeC-CcEEecCEEEEccCh
Q 022185 36 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPV 99 (301)
Q Consensus 36 ~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~-~g~v~~V~~~~-g~~~~ad~VI~a~p~ 99 (301)
++.++ ...+++.|.+.+++.|++|+++++|++|..++ ++++.+|.+.+ +.++.++.||+++.-
T Consensus 117 ~~~~~-g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 117 FLRGG-GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred eecCC-HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 34444 36799999999999999999999999999853 56777776543 357899999999973
No 64
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.85 E-value=0.0036 Score=57.22 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=51.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccChhhHhhcC
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQL 106 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~~l~~l~ 106 (301)
.+|.++|.+.++++|++|+.+++|++|... +++++.|.+.++ ..++||.||+|+.......|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCHHHH
Confidence 578999999999999999999999999984 556776776665 479999999998887555543
No 65
>PRK06185 hypothetical protein; Provisional
Probab=96.81 E-value=0.11 Score=47.65 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred cchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEe--CCc-EEecCEEEEccChhh-HhhcC
Q 022185 44 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 44 ~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~~ad~VI~a~p~~~-l~~l~ 106 (301)
.+.+.|.+.+++ .|++++.+++|+++..+ ++.+.+|++. +|+ +++||.||.|....- +.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 355666666655 37899999999999985 4445445543 564 689999999987643 34443
No 66
>PRK08244 hypothetical protein; Provisional
Probab=96.74 E-value=0.17 Score=47.70 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CC-cEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG-NVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g-~~~~ad~VI~a~p~~ 100 (301)
+-+.|.+.+++.|++|+.+++|++|+.++++ +. |++. +| ++++||+||.+-...
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~-v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VE-VVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EE-EEEEeCCccEEEEeCEEEECCCCC
Confidence 3445556666789999999999999986454 43 5443 45 478999999987663
No 67
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.74 E-value=0.012 Score=54.20 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHh---hccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEec
Q 022185 14 SMQCILIALNRFL---QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDG 90 (301)
Q Consensus 14 sa~~~~~~~~~~~---~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~a 90 (301)
++...+..+++|+ ...+.+-+.||.-|. +-|++++.+.-.-.|+...|+++|.+|..+++|++.+|.. +|++++|
T Consensus 201 p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~-GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~ 278 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGKSPFLYPLYGL-GELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKA 278 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSSSSEEEETT-T-THHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEE
T ss_pred cHHHHHHHHHHHHHHHhccCCCCEEEEccCC-ccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEc
Confidence 4555666666664 333456899999995 8999999998877999999999999999977888877876 8899999
Q ss_pred CEEEEc
Q 022185 91 DAYVFA 96 (301)
Q Consensus 91 d~VI~a 96 (301)
+.||+.
T Consensus 279 k~vI~d 284 (438)
T PF00996_consen 279 KKVIGD 284 (438)
T ss_dssp SEEEEE
T ss_pred CEEEEC
Confidence 999964
No 68
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.69 E-value=0.19 Score=45.53 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=50.7
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++++.+|. +..++..|++.++++| ..+..+++|+.+... . ++..|.+.+|+ ++||.||+++....
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 345555554 3467889999998889 567779999999984 3 45568887775 99999999998755
No 69
>PRK09126 hypothetical protein; Provisional
Probab=96.66 E-value=0.15 Score=46.49 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=41.0
Q ss_pred chHHHHHHHH-HcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~-~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+.|.+.+. ..|++|+.+++|++++.+++ .+ .|++.+|++++||.||.+....
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-GA-QVTLANGRRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEEEeCCCC
Confidence 4445555553 36899999999999998534 35 3777788889999999988763
No 70
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.60 E-value=0.013 Score=52.92 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred CceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-cEEecCEEEEccCh
Q 022185 31 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPV 99 (301)
Q Consensus 31 ~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~ 99 (301)
..+..||...-++.++++|...+++.|++|+++++|++|+ +++ . .|.+.++ +.++||.||+|+.-
T Consensus 74 ~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~-~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 74 SSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-L-RFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-E-EEEECCCceEEecCEEEEcCCC
Confidence 3456778544368999999999999999999999999993 233 3 3666433 46999999999975
No 71
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.59 E-value=0.22 Score=45.67 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=42.1
Q ss_pred chHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+.|.+.+.+ .|++|+++++|++|+.++++ + .|++.+|++++||.||.+-...
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-A-WLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-E-EEEECCCCEEEeCEEEEeCCCC
Confidence 44566676655 47899999999999985443 5 4788888899999999988763
No 72
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.59 E-value=0.14 Score=46.71 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEe-CCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~ad~VI~a~p~~ 100 (301)
..|.+.|.+.+++.+ ++++.+++|+.|+.+++ .+. |++. ||++++||.||-+=..+
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCCCc
Confidence 467888999988766 89999999999999644 465 7777 99999999999876653
No 73
>PLN02463 lycopene beta cyclase
Probab=96.56 E-value=0.64 Score=43.32 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+-+.|.+.+.+.|++++ +.+|++|+.. ++.+ .|++.+|++++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~~-~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHE-ESKS-LVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCeE-EEEECCCCEEEcCEEEECcCCC
Confidence 345667777777899986 6799999985 4434 4888888889999999998763
No 74
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.51 E-value=0.14 Score=47.08 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=39.5
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeC-C--cEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+.+. |++++++++|++|+.++++ +. |++.+ + ++++||.||.|-...
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~-v~~~~~~~~~~i~adlvIgADG~~ 180 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-AT-VTLEIEGKQQTLQSKLVVAADGAR 180 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eE-EEEccCCcceEEeeeEEEEeCCCC
Confidence 4566676766654 7899999999999985444 43 66543 3 368999999887753
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.50 E-value=0.0046 Score=50.74 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
+.+.+-|.+.+++.+.+|+++++|++|..++++ +. |++.++++++||.||+|+..
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~-v~~~~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WT-VTTRDGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EE-EEETTS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EE-EEEEecceeeeeeEEEeeec
Confidence 346677777887889999999999999997555 53 88888878999999999884
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.32 E-value=0.013 Score=53.63 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=51.1
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++++.+|. ...+.++|.+.+++.|++|+++++|++|+.. ++.+ .|.+.+| ++++|.||+++....
T Consensus 137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcch
Confidence 344455553 3578889999998999999999999999974 4445 4777666 799999999988754
No 77
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.28 E-value=0.015 Score=54.77 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=50.2
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCC--cEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~~~ 101 (301)
..+.+.+|. ...+..+|.+.++++|++|+++++|++|+.++++.+. |++ .+| .+++||+||+++....
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 445566652 3578999999998899999999999999985454342 433 234 3689999999998754
No 78
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.28 E-value=0.017 Score=54.43 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 101 (301)
..+.++|.+.++++| ++|+++++|++|+.++++.+. |++. +|+ +++|++||+++....
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence 478999999998877 699999999999986566443 4432 353 689999999998755
No 79
>PRK06996 hypothetical protein; Provisional
Probab=96.25 E-value=0.43 Score=43.68 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC---cEEecCEEEEccC
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATP 98 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p 98 (301)
.|-+.|.+.+++.|++++.+++|++|+.++++ |+ +++.+| ++++||.||-+-.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~-v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VT-LALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EE-EEECCCCcceEEeeeEEEECCC
Confidence 46778888888889999999999999886555 53 666543 5799999998855
No 80
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.23 E-value=0.015 Score=40.13 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC
Q 022185 42 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG 85 (301)
Q Consensus 42 ~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g 85 (301)
...+.+.+.+.+++.|++|++++.|++|+.++++ +. |+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 3556777888999999999999999999998777 76 888886
No 81
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.14 E-value=0.016 Score=54.97 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=51.5
Q ss_pred eEeeecCCC-cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CC--cEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~-~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~ 101 (301)
.+.+++|-+ +.+++.++++..+++|++|+.+++|++|..+ ++++.+|++. +| .+++|+.||.|+.++.
T Consensus 117 a~~~~dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 117 AVKVPDGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred EEEeCCcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 355664322 4578888889998999999999999999984 5556667653 34 2689999999998764
No 82
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.13 E-value=0.7 Score=44.18 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=40.7
Q ss_pred HHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEe--CC--cEEecCEEEEccChhh-HhhcC
Q 022185 47 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 47 ~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~~~-l~~l~ 106 (301)
+.|.+.+.+ .|++|+.+++|++|++++++ |+ |++. +| ++++||.||-+-...- +.+.+
T Consensus 117 ~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~l 180 (538)
T PRK06183 117 AVLRAGLARFPHVRVRFGHEVTALTQDDDG-VT-VTLTDADGQRETVRARYVVGCDGANSFVRRTL 180 (538)
T ss_pred HHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-EE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHc
Confidence 345555555 38999999999999996555 53 6554 56 4689999998877644 33444
No 83
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.13 E-value=0.44 Score=43.34 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=40.2
Q ss_pred HHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 48 PIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 48 ~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.|.+.+++ .|++|+.+++|++++.++++ +. |++.+|+++++|.||.+-...-
T Consensus 115 ~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~~-v~~~~g~~~~~~lvIgADG~~S 167 (384)
T PRK08849 115 GLWQQFAQYPNLTLMCPEKLADLEFSAEG-NR-VTLESGAEIEAKWVIGADGANS 167 (384)
T ss_pred HHHHHHHhCCCeEEECCCceeEEEEcCCe-EE-EEECCCCEEEeeEEEEecCCCc
Confidence 45555544 46899999999999986554 53 8888888999999999877643
No 84
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.12 E-value=0.019 Score=54.94 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=51.3
Q ss_pred eEeeecCCC-cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC---C--cEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~-~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~~~ 101 (301)
.+.+++|-+ +.+++.++++..+++|++|+++++|++|..+ ++++.+|++.+ | .+++||.||.|+.++.
T Consensus 138 a~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 138 AVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred EEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 455565432 3577888888888899999999999999984 55676777532 3 3689999999998764
No 85
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=96.10 E-value=0.011 Score=53.28 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=48.2
Q ss_pred ceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEE-EecCCCc-EEEEEEeC--C-cEEecCEEEEccChhhHh
Q 022185 32 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDILK 103 (301)
Q Consensus 32 ~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I-~~~~~g~-v~~V~~~~--g-~~~~ad~VI~a~p~~~l~ 103 (301)
.+.+-++|| +.+|.+.|.+. .|.++ ++++|++| ...+++. ...|...+ + ..-.+|.||+|+|+....
T Consensus 118 ~gl~sV~GG-N~qI~~~ll~~---S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 118 GGLWSVEGG-NWQIFEGLLEA---SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred CCceEecCC-HHHHHHHHHHH---ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 467889999 89999999885 58999 99999999 4444443 22344432 2 223579999999996543
No 86
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.03 E-value=0.025 Score=52.95 Aligned_cols=56 Identities=29% Similarity=0.367 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CC--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++.|++|+++++|++|.. ++++|++|++. +| ..+.++.||+++..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 67899999999999999999999999998 46778778763 33 35789999999863
No 87
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.02 E-value=0.02 Score=52.71 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.++++|++|+++++|+++..+ +++|++|... +|+ .+.|+.||+++.-
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCc
Confidence 568999999999999999999999999994 7789899876 454 4789999999865
No 88
>PRK07121 hypothetical protein; Validated
Probab=96.02 E-value=0.025 Score=53.33 Aligned_cols=57 Identities=25% Similarity=0.418 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC-Cc--EEec-CEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~ 99 (301)
..+++.|.+.+++.|++|+++++|++|..+++|+|.+|+..+ |+ .+.| +.||+++..
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 578999999999999999999999999986567788887643 33 4788 999999875
No 89
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.02 E-value=0.79 Score=41.69 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=39.8
Q ss_pred HHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 47 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 47 ~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.|.+.+++ .|++|+++++|++|..+++ .+. |++.+|+.+++|.||.+....
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-~~~-v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQG-SVR-VTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCC-eEE-EEECCCCEEEeCEEEEecCCC
Confidence 455555654 4789999999999987544 353 777788789999999988764
No 90
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.02 E-value=1.2 Score=40.70 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=41.5
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE-eCCc--EEecCEEEEccChhh-HhhcC
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~~~-l~~l~ 106 (301)
+.+.|.+...+.|++++++++|++|+..+++.+ .|++ .+|+ +++||.||-|=...- +.+.+
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~ 169 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDGFHGVSRASI 169 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCCCCCchhhhc
Confidence 456677766678999999999999986223333 3665 3664 588999888766543 34444
No 91
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.99 E-value=0.029 Score=52.87 Aligned_cols=58 Identities=24% Similarity=0.289 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHH----cC--cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 43 ERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 43 ~~l~~~l~~~l~~----~g--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
..+..+|.+.+++ +| ++|+++++|++|...+++ +..|++.+| +++||.||+++..+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~-~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS-LYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC-eEEEEECCC-EEEeCEEEECcChhHH
Confidence 4688999999988 77 789999999999985344 445888777 6999999999987553
No 92
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.96 E-value=0.024 Score=54.39 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=48.2
Q ss_pred eecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEec-CEEEEccCh
Q 022185 36 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPV 99 (301)
Q Consensus 36 ~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~a-d~VI~a~p~ 99 (301)
+..+| ..|+++|.+.+++.|++|+++++|+++.. ++|+|.+|... +|+ .+.+ +.||+++.-
T Consensus 212 ~~~~G--~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGG 276 (564)
T PRK12845 212 YAAGG--QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGG 276 (564)
T ss_pred ccCCh--HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCC
Confidence 34566 78999999999999999999999999987 46788888654 443 3556 579998864
No 93
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=95.93 E-value=0.042 Score=51.71 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred eEeeecCCC--cccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEE---EeCCc--EEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~---~~~g~--~~~ad~VI~a~p~~~ 101 (301)
..+.+.|+. ...|.++|.+.+++ .|++|+++++|+.|...+++.+. |+ +.+|+ +++||+||+++..+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 344455542 24778889988864 58999999999999985344443 43 33442 689999999998865
No 94
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.91 E-value=0.3 Score=43.29 Aligned_cols=56 Identities=30% Similarity=0.451 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CC--cEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~~ 101 (301)
.+-+.|.+.+++.|++|+.+++|+.++.++++ +. +++. +| ++++||.||-+-...-
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~-~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VT-VVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EE-EEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccc-cc-cccccccCCceeEEEEeeeecccCccc
Confidence 35667778888889999999999999986554 43 3322 34 3689999998876643
No 95
>PRK06116 glutathione reductase; Validated
Probab=95.79 E-value=0.03 Score=52.15 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|+++++|++|+.++++.+ .|++.+|+++++|.||+++..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCC
Confidence 35677888899999999999999999997545534 377778888999999999864
No 96
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.70 E-value=1.6 Score=39.62 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.|.+.|.+.+++.+ ++++.+++|++|..++++ +. |.+.++ +++||.||-|-...
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~-v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SI-IKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EE-EEEcCC-EEeeCEEEEeCCCC
Confidence 45677777777654 789999999999985444 53 777666 89999999887664
No 97
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.69 E-value=0.042 Score=50.68 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 99 (301)
++.+.|.+.+++.|++|+++++|++++.. ++++..+.+.+| ..++||.||+++..
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 57889999998899999999999999985 445654555455 35899999999875
No 98
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.66 E-value=0.044 Score=50.31 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEe-----CCcEEecCEEEEccChhhH
Q 022185 43 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 43 ~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~-----~g~~~~ad~VI~a~p~~~l 102 (301)
..|...|.+.++++ |.+++++++|++|.++++|.+. |.+. +.+++.|+.|.+......+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE-VKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE-EEEEecCCCCeEEEECCEEEECCchHhH
Confidence 47889999999887 9999999999999998888553 5543 2257899999998876544
No 99
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.65 E-value=0.028 Score=51.36 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhc
Q 022185 42 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 42 ~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 105 (301)
+..+-+.+...++++|+++++++.|.+++.+++|++..|.+.+|.+..||.||+-+...-..++
T Consensus 254 ~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 254 GPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred hHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 3556677788888999999999999999999889988899999999999999998776444333
No 100
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.65 E-value=0.041 Score=53.04 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEecC-EEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 99 (301)
..++..|.+.+++.|++|+++++|++|..+++|+|++|... +|+ .+.|+ .||+++.-
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGG 273 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGG 273 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCc
Confidence 67888888888889999999999999999767888888764 343 36787 59988864
No 101
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.62 E-value=0.092 Score=48.66 Aligned_cols=89 Identities=24% Similarity=0.349 Sum_probs=59.1
Q ss_pred CccccHHHHHHHHHHHhhccCC----ceEeeec-CCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCC---cEEEEE
Q 022185 10 PDELSMQCILIALNRFLQEKHG----SKMAFLD-GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFL 81 (301)
Q Consensus 10 ~e~~sa~~~~~~~~~~~~~~~~----~~~~~~~-GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g---~v~~V~ 81 (301)
-.--||..+-.++.||+.+..+ +.+.+.+ --+ +.++.+|.+.|+++|++++++++|+.|+.+.++ .++.+.
T Consensus 170 qpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQy-eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~ 248 (500)
T PF06100_consen 170 QPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQY-ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIH 248 (500)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCCCccccccCccccH-HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEE
Confidence 3445788888888888654332 1222221 233 789999999999999999999999999985332 233444
Q ss_pred E-eCCc--EE---ecCEEEEccCh
Q 022185 82 L-TNGN--VI---DGDAYVFATPV 99 (301)
Q Consensus 82 ~-~~g~--~~---~ad~VI~a~p~ 99 (301)
+ .+|+ ++ +-|.|++|..-
T Consensus 249 ~~~~g~~~~i~l~~~DlV~vT~GS 272 (500)
T PF06100_consen 249 IEQDGKEETIDLGPDDLVFVTNGS 272 (500)
T ss_pred EEcCCCeeEEEeCCCCEEEEECCc
Confidence 3 3453 22 45888887654
No 102
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.55 E-value=0.042 Score=51.00 Aligned_cols=57 Identities=25% Similarity=0.351 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++.|++|+++++|++|..+++++|.+|++. +|+ .+.++.||+++..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 35888999999999999999999999998656777777654 343 3689999999874
No 103
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.51 E-value=1.2 Score=41.33 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=41.5
Q ss_pred chHHHHHHHHHcC---cEEEecceeeEEEec-----C-CCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLG---GEVRLNSRVQKIELN-----D-DGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g---~~I~l~~~V~~I~~~-----~-~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+.|.+.+++.+ ++++++++|++|+.+ + +..+ .|++.+|++++||.||-|=...
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v-~v~~~~g~~i~a~llVgADG~~ 182 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV-HITLSDGQVLYTKLLIGADGSN 182 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce-EEEEcCCCEEEeeEEEEecCCC
Confidence 5566777777664 899999999999852 1 2235 4778889999999999886653
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.51 E-value=0.067 Score=49.10 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=48.3
Q ss_pred eeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 35 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 35 ~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.||..+....+.+.|.+.+++.|++|+++++|++|..+ ++.+ .|++ +++++.+|.||+|+..
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~-~v~~-~~~~i~ad~VIlAtG~ 158 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNGF-GVET-SGGEYEADKVILATGG 158 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCeE-EEEE-CCcEEEcCEEEECCCC
Confidence 34433224678999999999999999999999999874 4434 4666 5667999999999986
No 105
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=95.35 E-value=0.059 Score=47.29 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=53.6
Q ss_pred CCC--cccchHHHHHHHHHcCcEEEecceeeEEEec-CCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCc
Q 022185 39 GNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 108 (301)
Q Consensus 39 GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~-~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~ 108 (301)
||+ +.+-++++...++++|+.++-+..|+.|... +++..++|.|.+|..|.|+.+|+|+.+++. +++++
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcCc
Confidence 454 3345677777888899999999999999952 344455788989988999999999999876 45554
No 106
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.30 E-value=0.053 Score=52.29 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CCc-EEec-CEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~~a-d~VI~a~p~~ 100 (301)
..++..|.+.++++|++|+++++|++|..+ +|+|.+|.+. ++. +++| +.||+++...
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 568899999999999999999999999874 6777777654 332 4788 9999998653
No 107
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.19 E-value=0.071 Score=50.52 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CC--cEEecCEEEEccC
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATP 98 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p 98 (301)
.+++.|.+.+++.|++|+++++|++|.. ++|+|.+|.+. +| .++.||.||+++.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 5889999999999999999999999997 46777777653 33 3588999999986
No 108
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.17 E-value=0.095 Score=50.44 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..|+..|.+.+++.|++|+.++.++++..+++|+|.+|.. .+|+ .+.|+.||+++.--
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 188 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGA 188 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCc
Confidence 5688999988888899999999999999855788888875 2554 47899999999763
No 109
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.17 E-value=0.095 Score=50.74 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++.|++|++++.|+++..+++|+|.+|.. .+|+ .+.|+.||+|+.--
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4688899998888999999999999999854577888875 2554 57899999998753
No 110
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.12 E-value=0.081 Score=51.48 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHcCcEEEecceeeEEEecC-CCcEEEEEEe---CCc--EEecCEEEEccChhh
Q 022185 42 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 42 ~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~-~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 101 (301)
..+++.+|++..+++|++|+.+++|++|..++ +|++.+|++. +|+ ++.+|.||+|+.++.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 35788889999999999999999999998854 4666666652 343 579999999998864
No 111
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.10 E-value=0.076 Score=51.22 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC-Cc--EEec-CEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~a-d~VI~a~p~ 99 (301)
..++++|.+.++++|++|+++++|+++..+ +++|.+|.+.+ |+ .+.| +.||+|+..
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCC
Confidence 579999999999999999999999999874 67788887653 43 4676 689998865
No 112
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=95.02 E-value=0.072 Score=48.05 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=45.8
Q ss_pred EeeecCCC--cccchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 34 MAFLDGNP--PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 34 ~~~~~GG~--~~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+.++.+|. +..++..|.+.+.++ |++|+.+++|++|+. + .|++.+| +++||.||+|+.+..
T Consensus 134 ~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 134 LHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADF 197 (365)
T ss_pred EEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCCh
Confidence 44555543 346778888887765 999999999999975 2 3677667 478999999998754
No 113
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.96 E-value=0.13 Score=47.73 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEE-EeCCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~-~~~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++ .|++|+++++|++|..+ +++|.+|. ..+|+ .+.|+.||+|+.-
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 4678888888865 58999999999999874 56677765 33454 5789999999875
No 114
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.95 E-value=0.12 Score=49.77 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 100 (301)
..|++.|.+.+++.|++|+.++.|+++.. ++|+|.+|... +|+ .+.|+.||+|+.--
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 56899999988889999999999999998 47888888752 454 47899999998753
No 115
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.93 E-value=0.1 Score=44.84 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC-----------CcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-----------g~~~~ad~VI~a~p~ 99 (301)
..+...|.+..++.|++|++++.|.++..++++++.+|++.. ..+++|+.||.++..
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 567888998888899999999999999875554677776531 246899999999865
No 116
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.86 E-value=0.1 Score=47.33 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=40.4
Q ss_pred hHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 46 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 46 ~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
...+.+.|++ .+.+| ...+|++|.. ++++|.+|++.+|+.+.+|.||+|+.+
T Consensus 98 ~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 98 SRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 4455566765 45666 5789999998 578899999999999999999999987
No 117
>PLN02697 lycopene epsilon cyclase
Probab=94.79 E-value=3.9 Score=39.01 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+.+.|.+.+.+.|+++ ++++|++|..++++ +..+.+.+|++++|+.||.|....-
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 34577888877789998 78899999985444 4334556788899999999988755
No 118
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.77 E-value=0.069 Score=48.66 Aligned_cols=52 Identities=33% Similarity=0.478 Sum_probs=43.6
Q ss_pred cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCc-EEecCEEEEccCh
Q 022185 42 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPV 99 (301)
Q Consensus 42 ~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~-~~~ad~VI~a~p~ 99 (301)
+..+.+...+.|+++|++|++++.|++|+. ++ |++.+|+ ++.++.+|-|+..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCC
Confidence 456788888899999999999999999996 44 6677776 4999999998765
No 119
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.72 E-value=0.11 Score=48.55 Aligned_cols=56 Identities=29% Similarity=0.461 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.++++|++|+++++|++|+.++++ +. +++.+|+++++|.||+++...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~~-v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-VI-VHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-EE-EEECCCCEEEeCEEEEeecCC
Confidence 356678888998899999999999999974343 43 666678889999999998753
No 120
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.70 E-value=0.11 Score=48.85 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|++++.|++|..++++.+ .|++.+|+++++|.||+++..
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSK-HVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceE-EEEEcCCCEEEcCEEEEeeCC
Confidence 45677888899999999999999999997544433 466667778999999998764
No 121
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.69 E-value=0.16 Score=49.28 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHH----cCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~----~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..++..|.+.+++ .|++|+++++|+++..+++|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 4567777666644 3799999999999998656688888764 343 5789999999965
No 122
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.67 E-value=0.11 Score=49.92 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEecC-EEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 99 (301)
..|+..|.+.+++.|++|+++++|++|..+ +|+|++|... +|+ .+.|+ .||+++.-
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 679999999999999999999999999984 6788888764 453 36784 79988864
No 123
>PRK12839 hypothetical protein; Provisional
Probab=94.65 E-value=0.12 Score=49.78 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CCc-EE-ecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VI-DGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~-~~-~ad~VI~a~p~ 99 (301)
..|+..|.+..++.|++|+++++|++|..+++|+|++|... +|+ .+ .++.||+++..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGG 274 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGG 274 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCC
Confidence 57889999999889999999999999987556788888654 343 23 45899998864
No 124
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.63 E-value=0.094 Score=50.53 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC--Cc-EEecC-EEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~-~~~ad-~VI~a~p~ 99 (301)
..+++.|.+.+++.|++|+++++|+++..+ +++|++|.+.+ ++ .+.++ .||+++..
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGG 273 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCC
Confidence 578999999998999999999999999984 67787887653 32 36775 78888864
No 125
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.62 E-value=0.14 Score=40.38 Aligned_cols=42 Identities=36% Similarity=0.486 Sum_probs=32.4
Q ss_pred cCcEEE-ecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 56 LGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 56 ~g~~I~-l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.|++|. ...+|+.|...+++ . .|.+.+|..+.||.||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~-~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG-Y-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc-E-EEEECCCCEEEeCEEEECCCC
Confidence 354444 67799999997665 4 377889999999999999853
No 126
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.58 E-value=0.13 Score=51.86 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=43.6
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.|+++|++|++++.|++|..++++.+..|.+.+|+++++|.||++++.
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 345778888899999999999999864333344577788989999999999875
No 127
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.54 E-value=0.14 Score=46.44 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|++.|++++++++|++|..+ ++.+ .|.+.+|+++++|.||+++..
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSGI-RATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCEE-EEEEcCCcEEECCEEEECcCC
Confidence 34566778888899999999999999974 3334 377778889999999999765
No 128
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.52 E-value=0.17 Score=48.85 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 100 (301)
..|+..|.+.+++.|++|.+++.|+++..+++|+|.+|... +|+ .+.|+.||+|+.-.
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 56888898888778999999999999998557788888752 453 47899999998753
No 129
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.49 E-value=3.6 Score=37.31 Aligned_cols=55 Identities=33% Similarity=0.433 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+-+.+.+.++ .++.+.+++.|++|+.++++ + .|++.+|++++|+.||-+.++.
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~-~-~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGDG-V-LVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCce-E-EEEECCCCEEEeeEEEECCCcc
Confidence 456677777776 57789999999999986443 3 3788899899999999998853
No 130
>PRK06834 hypothetical protein; Provisional
Probab=94.44 E-value=0.13 Score=48.57 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=42.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+-+.|.+.+++.|++|+.+++|++|+.++++ +. |++.+|+++++|+||.+....
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~-v~~~~g~~i~a~~vVgADG~~ 155 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTG-VD-VELSDGRTLRAQYLVGCDGGR 155 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EE-EEECCCCEEEeCEEEEecCCC
Confidence 4456667777789999999999999986444 53 777778789999999987663
No 131
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.43 E-value=0.14 Score=47.68 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|++.|+++++++.|++|+..+++ + .|++.+|+++++|.||+++..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-L-KVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-E-EEEEcCCcEeecCEEEEeeCC
Confidence 345567778888899999999999999875444 4 366667888999999999875
No 132
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.39 E-value=0.16 Score=49.66 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 47 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 47 ~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
+.|.+.+++.|++|++++.|+++..+ +|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 56666777789999999999999984 6788888764 353 5789999999875
No 133
>PLN02507 glutathione reductase
Probab=94.38 E-value=0.15 Score=48.22 Aligned_cols=55 Identities=15% Similarity=0.331 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|++++.|++|+..+++ +. |.+.+|+++++|.||+++..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~~-v~~~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-IK-VITDHGEEFVADVVLFATGR 298 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-EE-EEECCCcEEEcCEEEEeecC
Confidence 445666777888899999999999999874333 43 66667888999999999875
No 134
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.33 E-value=0.15 Score=47.50 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-cEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.|+++|+++++++.|++|+.++++.+ .|++.+| +.+++|.||+++...
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceE-EEEECCCcEEEEcCEEEEeeCCC
Confidence 34567788889889999999999999987434433 3666677 568999999998753
No 135
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.32 E-value=0.15 Score=47.61 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=43.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC---cEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|+++|++|+++++|++|+.+ ++.+. +++.+| +++++|.||+++...
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v~-v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQT-DDGVT-VTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEEeCCeeEEEEeCEEEEeeCCc
Confidence 45677888888899999999999999974 33343 665555 678999999998763
No 136
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.29 E-value=0.15 Score=48.94 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEecC-EEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 99 (301)
..+...|.+.+++.|++|+++++|++|..+ +++|++|... +|+ .+.|+ .||+++.-
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG 267 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGG 267 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCC
Confidence 568889999998899999999999999984 6778788764 443 47786 69987754
No 137
>PRK08275 putative oxidoreductase; Provisional
Probab=94.21 E-value=0.16 Score=48.67 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+.+.|.+.+++.|++|+.++.|++|..+++|++.+|.. .+|+ .+.|+.||+|+...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 4678899998988999999999999999854677877764 2454 47899999998763
No 138
>PRK07190 hypothetical protein; Provisional
Probab=94.19 E-value=0.17 Score=47.69 Aligned_cols=53 Identities=26% Similarity=0.316 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 47 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 47 ~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..|.+.+++.|++|+.+++|++|+.++++ +. +++.+|++++|++||.+....-
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~-v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAG-CL-TTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eE-EEECCCcEEEeCEEEECCCCCH
Confidence 34445677789999999999999986554 53 5666788899999999988744
No 139
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.18 E-value=0.19 Score=48.47 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCC---CcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~---g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++.|++|+.++.|++|..+++ |+|.+|.. .+|+ .+.|+.||+|+.-.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 46888899988889999999999999987542 77888865 2454 47899999998763
No 140
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.16 E-value=0.19 Score=46.05 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=41.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
+.+.+.+.++++|++|+++++|++|+. ++.+ .|++.+|+++++|.||+++..
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~-~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD--GEKV-ELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEE-EEEECCCCEEECCEEEECCCC
Confidence 345567777889999999999999986 3334 377778888999999998875
No 141
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.15 E-value=0.2 Score=47.92 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++.|++|++++.|+++..+++++|.+|.. .+|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4678889888888899999999999999854444777764 3453 57899999998753
No 142
>PRK07588 hypothetical protein; Provisional
Probab=94.09 E-value=0.14 Score=46.72 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
|.+.|.+.++ .|++|+++++|++|+.+++ .+. |++.+|+++++|.||.|-...
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~-~v~-v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRD-GVR-VTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCC-eEE-EEECCCCEEEeCEEEECCCCC
Confidence 4455555553 4789999999999998544 464 788889889999999887763
No 143
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.08 E-value=0.17 Score=49.12 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 99 (301)
..++..|.+.+++.|++|+.++.|+++..+++|+|.+|.. .+|+ .+.|+.||+|+.-
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 4678889888888999999999999988745678888865 2453 5789999999954
No 144
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.01 E-value=0.21 Score=46.67 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|++.|++|+++++|++|+.+ ++.+. +++.+| +++++|.||+++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCC
Confidence 345677788898899999999999999874 44453 665566 47899999999875
No 145
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.01 E-value=0.26 Score=42.24 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCC-cEEEEEEeC-----------CcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTN-----------GNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g-~v~~V~~~~-----------g~~~~ad~VI~a~p~ 99 (301)
..+.+.|.+...+.|++|+.++.|.++...+++ ++.+|++.. ..+++|+.||.|+..
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 467888888888899999999999999985442 577777641 236889999999875
No 146
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.97 E-value=0.19 Score=48.37 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++.|++|++++.|+++.. ++|+|.+|... +|+ .+.|+.||+|+.--
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 197 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGM 197 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence 46888898888778999999999999998 47888888764 332 57899999999753
No 147
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.94 E-value=0.19 Score=47.12 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++|++|+++++|++|+.+++ .+. |.+.+|+++++|.||+++..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~-v~~~~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGD-GVV-VTLTDGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EEE-EEECCCcEEEecEEEEeecC
Confidence 3556677888889999999999999987433 353 66667888999999998765
No 148
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=93.88 E-value=0.22 Score=44.58 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=49.6
Q ss_pred cCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC---C--cEEecCEEEEccCh
Q 022185 38 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 99 (301)
Q Consensus 38 ~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 99 (301)
.|+|-.-+.+++.+.|+++|.++++++.|+.+..+++|.|. |++.+ | ++++||.+.+++.-
T Consensus 247 ~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 247 GGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred ccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccC
Confidence 45665568888899999999999999999999998887664 66543 3 46899999998864
No 149
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.88 E-value=0.2 Score=46.60 Aligned_cols=55 Identities=27% Similarity=0.447 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~--~~~ad~VI~a~p~ 99 (301)
.-+.+.+.+.|++.|.+++++++|++++.++++ + .+++++|+ ++++|.|++++.-
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-V-LVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-E-EEEEecCCCCEEEeeEEEEccCC
Confidence 456788888998888999999999999986555 5 37777775 6889999999875
No 150
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.84 E-value=0.21 Score=50.04 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.|+++|++|++++.|++|.. ++++.+|++.+|+++++|.||+++..
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCC
Confidence 34566778889999999999999986 34455688889989999999999875
No 151
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.81 E-value=0.25 Score=46.84 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=48.0
Q ss_pred EeeecCCC-cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC---Cc--EEecCEEEEccChhh
Q 022185 34 MAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 34 ~~~~~GG~-~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~ 101 (301)
+.|.+|-+ ..+++..+++..+++|++|+.+++|++|..+ ++.+ +|++.+ |+ +++|+.||.|+.++.
T Consensus 145 ~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 145 FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NGLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 44444432 2466777888888899999999999999874 4434 466543 53 689999999998854
No 152
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.42 Score=43.00 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=52.4
Q ss_pred CCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEc
Q 022185 30 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 96 (301)
Q Consensus 30 ~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a 96 (301)
+.+.+.||..|. .-|.+.+++.-.-.|+...+|+++.+|+.+++|++.+|+. ++++..+..+|+.
T Consensus 220 g~~~ylyP~yGl-gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 220 GKSPYLYPLYGL-GELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICD 284 (440)
T ss_pred CCCcceecccCc-chhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEec
Confidence 444589999996 8999999986545899999999999999977888866665 4456778888875
No 153
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.79 E-value=0.34 Score=46.93 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..|++.|.+...+.|++|+.++.|+++..+++|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45788888887788999999999999998556778888653 453 4789999999875
No 154
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.75 E-value=0.3 Score=47.09 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++.|++|+.++.|+++.. ++|+|.+|.. .+|+ .+.|+.||+|+...
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 56889999988888999999999999987 4677777753 3554 57999999999764
No 155
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=93.71 E-value=0.24 Score=47.68 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+...|.+.+++.|++|+.++.|++|..+ +|+|.+|.. .+|+ .+.|+.||+|+...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 457888888888889999999999999984 677877764 2554 57899999999763
No 156
>PRK11445 putative oxidoreductase; Provisional
Probab=93.63 E-value=5.2 Score=35.92 Aligned_cols=45 Identities=29% Similarity=0.240 Sum_probs=34.3
Q ss_pred HcCcEEEecceeeEEEecCCCcEEEEEE-eCCc--EEecCEEEEccChhh
Q 022185 55 SLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~~g~v~~V~~-~~g~--~~~ad~VI~a~p~~~ 101 (301)
+.|++++.++.|++|+.++++ +. |++ .+|+ +++||.||.|....-
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~~-v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-YH-VIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-EE-EEEecCCcEEEEEeCEEEECCCCCc
Confidence 468999999999999986554 43 554 4664 689999999887643
No 157
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.63 E-value=0.18 Score=46.66 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|+++++|++|.. ++ |++.+|+++++|.||.+++.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~----v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE----VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE----EEECCCCEEEccEEEEccCC
Confidence 34677788889999999999999999974 32 56778889999999998764
No 158
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.60 E-value=0.3 Score=45.81 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|+++|++|+++++|++|+..+++.+..+.+.+| +++++|.||+++...
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCc
Confidence 456777888888999999999999998521233433445566 368999999998764
No 159
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.60 E-value=0.24 Score=47.00 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEecC-EEEEccCh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad-~VI~a~p~ 99 (301)
..+++.+.+.+.+ .|++|+++++|+++..+ +|+|.+|... +|+ .+.|+ .||+++.-
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGG 233 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCC
Confidence 4688888887766 48999999999999884 6788888654 343 47786 78888865
No 160
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=93.57 E-value=0.23 Score=46.43 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+-+-|.+..++.|+++..++ |+++..+++|.+..|++.+|++++||.||=++....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 344556666667899998885 888888778888889999999999999998887644
No 161
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.57 E-value=0.24 Score=47.35 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-------CC-cEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-------~g-~~~~ad~VI~a~p~~ 100 (301)
..+.+.|.+.+++.|++|+.++.|+++..+++|+|.+|.+. +| ..+.|+.||+|+...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 46888999999888999999999999998545677777653 22 357899999999763
No 162
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.48 E-value=6.6 Score=36.69 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCeEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHhh
Q 022185 247 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~---~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.+|+.++||..+.-.| .|+.-|+.||..||+.|.+.+.
T Consensus 308 ~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999998766543 5999999999999999998764
No 163
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.46 E-value=0.27 Score=44.85 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=42.8
Q ss_pred chHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+.+.|.+.+++.+ ++++++++|++|+.+++ .+. |++.+|++++||.||.|....-
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~-v~~~~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GVT-VFDQQGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-ceE-EEEcCCCEEecCEEEECCCcCh
Confidence 4567777776654 89999999999998544 354 7777888899999999987643
No 164
>PRK06184 hypothetical protein; Provisional
Probab=93.45 E-value=0.27 Score=46.52 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=41.8
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE---eCCcEEecCEEEEccChhh
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~~ 101 (301)
-+.|.+.+++.|++|+++++|++|+.++++ |+ +++ .++++++||+||.+....-
T Consensus 112 e~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~-v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 112 ERILRERLAELGHRVEFGCELVGFEQDADG-VT-ARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EE-EEEEeCCCeEEEEeCEEEECCCCch
Confidence 456677787789999999999999986554 53 444 4557899999999987654
No 165
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.45 E-value=0.27 Score=47.95 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++.|++|+.++.|+++..+++|+|.+|... +|+ .+.|+.||+|+.-
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 45788999888888999999999999887546778888653 453 5789999999975
No 166
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.39 E-value=0.34 Score=42.09 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.+++.|+++++ ++|++|+.. ++.+ .|++.+|+++++|.+|+++...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~~-~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRPF-KVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCee-EEEeCCCCEEEeCEEEECCCCC
Confidence 4667888888889999999 899999984 3334 3777777889999999999863
No 167
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.38 E-value=0.28 Score=46.03 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..+++.|.+.+++.|++++.+ .|+++.. +++++.+|.+ +|+.+.++.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 568999999998899999876 7999887 4667777776 566789999999987633
No 168
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.34 E-value=0.19 Score=47.80 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeC-Cc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++. |++|+.+++|++|..+ +|+|.+|.+.+ ++ .+.|+.||+|+.-.
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 46889999888765 8999999999999874 67787777643 33 57899999998763
No 169
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=93.34 E-value=6.2 Score=35.93 Aligned_cols=37 Identities=27% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCeEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHhh
Q 022185 248 EGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 248 ~~l~~aGd~~~~~~~---~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
++++++||..+.-.| .|+.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 689999998766544 5899999999999999988764
No 170
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.14 E-value=0.33 Score=44.90 Aligned_cols=53 Identities=26% Similarity=0.366 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|++.|+++++++.|++|.. ++.+ +.+.+|+++++|.||++++..
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCcc
Confidence 3556677888889999999999999986 3433 455678889999999998763
No 171
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=93.07 E-value=0.053 Score=49.17 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=57.8
Q ss_pred ccCCCCccccHHHHHHHHHHHhh----ccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEE
Q 022185 5 LNFINPDELSMQCILIALNRFLQ----EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNF 80 (301)
Q Consensus 5 ~~~~~~e~~sa~~~~~~~~~~~~----~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V 80 (301)
.|..+|+++|+.++- .+.-.+. -....-+++|++|+ .+++++|.+. .+++|++|+.+..++. ++++ +
T Consensus 158 ~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~ml~~---~~i~v~l~~~~~~~~~-~~~~---~ 228 (377)
T TIGR00031 158 QWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKMLDH---PLIDVKLNCHINLLKD-KDSQ---L 228 (377)
T ss_pred eeCCChHHCCHHHeE-ecceEecCCCCcccccccccccccH-HHHHHHHHhc---CCCEEEeCCccceeec-cccc---e
Confidence 367899999999773 1111111 11233578899997 8898888865 4789999998888875 3432 3
Q ss_pred EEeCCcEEecCEEEEccChhhH
Q 022185 81 LLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 81 ~~~~g~~~~ad~VI~a~p~~~l 102 (301)
.+.++ .+. +.||.|.|+..+
T Consensus 229 ~~~~~-~~~-~~vi~Tg~id~~ 248 (377)
T TIGR00031 229 HFANK-AIR-KPVIYTGLIDQL 248 (377)
T ss_pred eeccc-ccc-CcEEEecCchHH
Confidence 33333 333 889999888664
No 172
>PRK08013 oxidoreductase; Provisional
Probab=93.04 E-value=0.29 Score=44.83 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=41.8
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
|-+.|.+.+++. |++|+++++|++|+.++++ +. |++.+|++++||.||-|-...
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENE-AF-LTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EE-EEEcCCCEEEeeEEEEeCCCC
Confidence 345666666664 7899999999999986554 53 777788899999999887653
No 173
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.01 E-value=0.4 Score=44.94 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CC--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g--~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|+++++|++|+.+ ++.+ .+++. +| +++++|.||+++..
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCc
Confidence 346678888898999999999999999874 3333 24443 56 36899999999865
No 174
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.00 E-value=0.21 Score=47.86 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecC-CCcEEEEEEe-CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~-~g~v~~V~~~-~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++ .|++|++++.|+++..++ +|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 5688999998865 489999999999998853 3778888654 454 3789999999976
No 175
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=92.95 E-value=0.35 Score=45.65 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeC-C--cEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g--~~~~ad~VI~a~p~~~ 101 (301)
..+.+.|.+.+++ .|++|+.++.|++|..+ ++++.+|.+.+ + ..+.++.||+++....
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889998877 68999999999999974 56677776654 3 3579999999997644
No 176
>PTZ00058 glutathione reductase; Provisional
Probab=92.85 E-value=0.45 Score=45.69 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC-CcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++|++|++++.|++|+.++++.+. +...+ ++++++|.||+++..
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCC
Confidence 45677888898899999999999999974343343 44334 357999999999864
No 177
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=92.80 E-value=0.33 Score=44.10 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++.| ++++ +++|++|...++ .+. |++.+|++++||.||.+....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~~-v~~~~g~~~~a~~vI~adG~~ 166 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPD-AAT-LTLADGQVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eEE-EEECCCCEEEeeEEEEeCCCC
Confidence 46778888888877 8888 999999987544 353 777788789999999988764
No 178
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.77 E-value=0.42 Score=44.91 Aligned_cols=55 Identities=15% Similarity=0.276 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC--C--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|+++++|++|+.+ ++.+. |.+.+ | +++++|.||+++..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGVS-VAYTDADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEEE-EEEEeCCCceeEEEcCEEEEccCC
Confidence 356777888898899999999999999974 33343 55443 3 46899999999875
No 179
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=92.76 E-value=0.5 Score=46.32 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..+...|.+.+++.|++|+.++.|++|.. ++|+|.+|.+. +|+ .+.|+.||+|+.-
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 46777888888889999999999999998 46777777653 454 3679999999975
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.73 E-value=0.42 Score=45.44 Aligned_cols=56 Identities=29% Similarity=0.423 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.+++.|++++++++|++|... ++.. .|++.+|+.+.+|.+|+++...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~-~~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETE-DGLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEec-CCeE-EEEECCCCEEEeCEEEECCCCC
Confidence 456788888888899999999999999874 3334 3777788889999999999874
No 181
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.71 E-value=0.45 Score=45.06 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC----cEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~~ 101 (301)
.+++..+++..+++|++|+.+++|++|..+ ++.+ +|++.++ .+++|+.||.|+.++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE-GGLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CCEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 456667777788899999999999999985 4433 4666554 2589999999998754
No 182
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.66 E-value=0.33 Score=43.77 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=41.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++|++++++++|++|+. + .|++.+|+++++|.||++++.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCC
Confidence 3566777888889999999999999863 2 266678888999999999875
No 183
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=92.59 E-value=11 Score=36.90 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCc--EEEecceeeEEEecCCC--cEEEEEEe------CC--cEEecCEEEEccChhh-HhhcC
Q 022185 45 LCLPIVEHIQSLGG--EVRLNSRVQKIELNDDG--TVKNFLLT------NG--NVIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 45 l~~~l~~~l~~~g~--~I~l~~~V~~I~~~~~g--~v~~V~~~------~g--~~~~ad~VI~a~p~~~-l~~l~ 106 (301)
+-+.|.+.+++.|. +++.+++|++++.++++ .|+ |++. +| ++++||+||-+=...- .++.+
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~l 216 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAI 216 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhc
Confidence 44556667766664 77899999999985432 243 5554 35 5789999998766533 34443
No 184
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.53 E-value=0.42 Score=44.38 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++|++++++++|++|+.+ ++.+ .+.+.+| ++++|.||+++..
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~ 252 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecC
Confidence 45667778898899999999999999974 4434 2555455 5899999999764
No 185
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=92.48 E-value=0.27 Score=47.13 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=54.8
Q ss_pred eEeeecCCC--cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 33 KMAFLDGNP--PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 33 ~~~~~~GG~--~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++.|..|. +..+..+|+...++.|..|..+++|++|....++ ..+|.|.-| .+++..||-++..+.
T Consensus 175 ~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 175 GLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred eeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence 456675554 4578889999998999999999999999985444 558999888 589999999998876
No 186
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.47 E-value=0.48 Score=44.03 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.+++.|++|+++++|++|.. ++++..+.+. +.++++|.||++++.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~-~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTD-KGEYEADVVIVATGV 244 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeC-CCEEEcCEEEECcCC
Confidence 45566777888889999999999999975 3445445554 447999999998875
No 187
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.43 E-value=0.47 Score=44.94 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|+++|+++++++.|++|...+ +.+ .|++.+|+++.+|.||+++...
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCC
Confidence 456788888989999999999999998743 334 3666678889999999998763
No 188
>PRK09897 hypothetical protein; Provisional
Probab=92.34 E-value=0.45 Score=45.30 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=42.7
Q ss_pred eeecCCCc---ccchHHHHHHHHHcC--cEEEecceeeEEEecCCCcEEEEEEeC-CcEEecCEEEEccCh
Q 022185 35 AFLDGNPP---ERLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 99 (301)
Q Consensus 35 ~~~~GG~~---~~l~~~l~~~l~~~g--~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~~~~ad~VI~a~p~ 99 (301)
++|+.-++ +...+.+.+.+++.| ++|+.+++|+.|+..+++ +. |++.+ |+.+.||.||+|+.-
T Consensus 96 f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 96 FLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred cCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EE-EEECCCCeEEEcCEEEECCCC
Confidence 45565543 233444555555566 688899999999985444 53 66644 467899999999864
No 189
>PRK06370 mercuric reductase; Validated
Probab=92.32 E-value=0.53 Score=44.05 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE--e-CCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--T-NGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~--~-~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|++.|++|+++++|++|+..+++ + .|.+ . +++++++|.||+++..
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~-~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDG-I-AVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-E-EEEEEeCCCceEEEeCEEEECcCC
Confidence 35567788888899999999999999974333 3 2333 2 3457899999999875
No 190
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.32 E-value=0.49 Score=43.90 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=40.1
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.++++|++++++++|++|+.+ ++.+. +. .+|+++++|.||+++..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v~-v~-~~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQVL-VV-TEDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEEE-EE-ECCeEEEcCEEEEeeCC
Confidence 34555667788899999999999999873 44342 44 36678999999998765
No 191
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.31 E-value=0.43 Score=45.02 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=53.0
Q ss_pred eEeeecCCC-cccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC---Cc--EEecCEEEEccChhhH
Q 022185 33 KMAFLDGNP-PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDIL 102 (301)
Q Consensus 33 ~~~~~~GG~-~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~~l 102 (301)
.+.|+++=+ ..+|+-..++...++|.+|+..++|+++.. ++| +.+|++.| |+ +++|+.||.|+.++.-
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 566666543 247777888888889999999999999999 465 77888775 32 4789999999988663
No 192
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.23 E-value=0.53 Score=44.79 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.+++.|.+++++++|++|...+ +.. .|.+.+|+++.+|.||+|+...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA-GLI-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeE-EEEECCCCEEEcCEEEECCCCC
Confidence 4677888888888999999999999999843 333 3777788889999999999873
No 193
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.03 E-value=0.4 Score=45.52 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC--Cc--EEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~ 99 (301)
.+++.|.+.++ .|++|+.++.|++|.. +++++.+|.+.+ |+ .+.|+.||+|+..
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 47788888775 6899999999999987 467777777643 33 5789999999965
No 194
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=92.00 E-value=0.38 Score=44.28 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
|.+.|.+.++ +..|+++++|++|+.++++ +. |++.+|+++++|.||.|-...-
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~-~~-v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAEE-VQ-VLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCCc-EE-EEEcCCCEEEeeEEEECCCccH
Confidence 5556666553 4678999999999986554 53 7778888899999999987654
No 195
>PRK10262 thioredoxin reductase; Provisional
Probab=91.98 E-value=0.46 Score=42.06 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=40.6
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC------cEEecCEEEEccCh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG------NVIDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g------~~~~ad~VI~a~p~ 99 (301)
+.+.+.+.|++.|+++++++.|++|..+ ++.+.+|++.++ +++++|.||+++..
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcC-CccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 5667777888899999999999999863 333555665432 36899999988764
No 196
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=91.97 E-value=0.54 Score=45.70 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+...|.+.++++| ++|+.++.|++|..+ +++|.+|.. .+|+ .+.|+.||+|+...
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 357777888777765 999999999999874 566777743 3453 58999999999853
No 197
>PRK05868 hypothetical protein; Validated
Probab=91.81 E-value=0.5 Score=42.88 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=35.1
Q ss_pred cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 56 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 56 ~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.|.+|+++++|++|+.+ ++.|. |++.+|++++||.||-|=...
T Consensus 117 ~~v~i~~~~~v~~i~~~-~~~v~-v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 117 PSVEYLFDDSISTLQDD-GDSVR-VTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred CCcEEEeCCEEEEEEec-CCeEE-EEECCCCeEEeCEEEECCCCC
Confidence 58899999999999875 44464 788888889999999887653
No 198
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.81 E-value=0.69 Score=43.14 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=26.1
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE
Q 022185 49 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 82 (301)
Q Consensus 49 l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~ 82 (301)
..+.+++.|++|++++.+++|..+++|++++|++
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~ 348 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKF 348 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEE
Confidence 3456777899999999999998755666766654
No 199
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.66 E-value=0.72 Score=43.27 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=41.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---C--CcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---N--GNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~--g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|++.|++|+++++|++|+.++++ +. +++. + ++++++|.||+++...
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADG-VS-LTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-EE-EEEEEcCCCceeEEEeCEEEEccCCc
Confidence 46677888998999999999999999874344 32 3332 2 3568999999998753
No 200
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=91.63 E-value=11 Score=34.60 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCCeEEeeccccCCCC---CchhHHHHHHHHHHHHHHHHhh
Q 022185 247 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~---~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.+|+.++||..+.-.| +||.-|+.||..||+.|.+.+.
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 3689999998776654 5999999999999999987654
No 201
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=91.62 E-value=0.58 Score=44.89 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=41.9
Q ss_pred ccchHHHHHHHHH----cCcEEEecceeeEEEecCCCcEEEEEEe---C--------------C-cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---N--------------G-NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~----~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~--------------g-~~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++ .|++|+++++++++..+ +|+|++|... + + ..+.|+.||+|+.-
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCC
Confidence 3577888776642 35999999999999984 6889898752 1 1 25789999998864
No 202
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=91.60 E-value=0.72 Score=44.44 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=42.7
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+...+.+.+++. |+.+. ...|+++...+++++.+|.+.+|..+.||.||+|+....
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 445677777776 56665 557888876435678889998888899999999998865
No 203
>PRK07236 hypothetical protein; Provisional
Probab=91.57 E-value=0.5 Score=43.02 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=38.1
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
+.+.|.+.+ .+++|+++++|++|+.++++ ++ |++.+|+++++|.||.|=..
T Consensus 102 l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~-v~-v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 102 LYRALRAAF--PAERYHLGETLVGFEQDGDR-VT-ARFADGRRETADLLVGADGG 152 (386)
T ss_pred HHHHHHHhC--CCcEEEcCCEEEEEEecCCe-EE-EEECCCCEEEeCEEEECCCC
Confidence 444444443 35689999999999985444 64 77888989999999998554
No 204
>PRK14727 putative mercuric reductase; Provisional
Probab=91.56 E-value=0.65 Score=43.71 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.|++.|++|+++++|++|+.+++ .+. |.+.++ ++.+|.||+++...
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~~~-v~~~~g-~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDN-GFV-LTTGHG-ELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCC-EEE-EEEcCC-eEEeCEEEEccCCC
Confidence 4566778888889999999999999987433 342 555455 68999999998764
No 205
>PLN02546 glutathione reductase
Probab=91.55 E-value=0.68 Score=44.45 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.|+++|++|++++.|++|...+++.+ .+.+.+++...+|.||+++...
T Consensus 293 ~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 293 EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccc
Confidence 34455667888889999999999999987545544 3555555444589999998753
No 206
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.51 E-value=0.71 Score=43.54 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC---cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g---~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++|++++.|++|... ++.+ .|++.+| +++++|.||+++..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~-~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKV-KVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEecCCcceEEEeCEEEEEecC
Confidence 455677888898999999999999999874 3334 3655554 37899999999875
No 207
>PRK14694 putative mercuric reductase; Provisional
Probab=91.47 E-value=0.7 Score=43.32 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..+.+.+.+.|++.|+++++++.|++|+.+ ++.+ .+.+.++ ++++|.||+++...
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~ 272 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GREF-ILETNAG-TLRAEQLLVATGRT 272 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEECCC-EEEeCEEEEccCCC
Confidence 457788888998999999999999999874 4333 2555444 69999999998653
No 208
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.14 E-value=0.71 Score=42.92 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=41.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|+++|++++++++|++|+. . .|++.+|+++++|.||++++.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCC
Confidence 34566788889889999999999999973 2 255667888999999999875
No 209
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.12 E-value=0.79 Score=42.90 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|++.|++|+++++|++|+.+ ++.+ .+++. +++++++|.||+++..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVR-GGGK-IITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEc-CCEE-EEEEEeCCCceEEEeCEEEEeECC
Confidence 35567778888899999999999999974 3323 24443 2357999999999865
No 210
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.94 E-value=0.76 Score=44.38 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+++.|.+.+++ .|++|+.++.|+++... +|++.+|.. .+|+ .+.|+.||+|+.-.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3478888888765 68999999999999874 677777754 2554 47899999998764
No 211
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=90.84 E-value=0.82 Score=44.12 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=42.3
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+...+.+.+++. |+++ +...|++|.. +++++.+|.+.+|..+.|+.||+|+....
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 345566666655 6777 5778999987 46678889999998999999999998643
No 212
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=90.77 E-value=0.77 Score=48.13 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=43.1
Q ss_pred cchHHHHHHHHH---cCcEEEecceeeEEEecCC----C----cEEEEEEe-----CCc--EEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQS---LGGEVRLNSRVQKIELNDD----G----TVKNFLLT-----NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~---~g~~I~l~~~V~~I~~~~~----g----~v~~V~~~-----~g~--~~~ad~VI~a~p~ 99 (301)
.++..|.+.+++ .|++|+++++|+++..+++ | +|++|.+. +|+ .+.|+.||+|+.-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGG 618 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGG 618 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCC
Confidence 467777777765 3899999999999998532 2 68888765 453 5789999999875
No 213
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.75 E-value=0.81 Score=42.87 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHHcCcE--EEecceeeEEEecCCCcEEEEEEeCC--c--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGE--VRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~--I~l~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~~ 100 (301)
..+.+-|.+..+..|.+ |+++++|++|+.. ++++. |++.++ . +..+|.||+|+...
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w~-V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKWR-VQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeEE-EEEEcCCCceEEEEcCEEEEeccCC
Confidence 45777777777778887 9999999999984 44443 666532 2 45799999999853
No 214
>PRK06753 hypothetical protein; Provisional
Probab=90.74 E-value=0.69 Score=41.74 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=39.1
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
|.+.|.+.+ .+.+|+++++|++|+.+ ++.+. |++.+|+++++|.||-|-...-
T Consensus 100 l~~~L~~~~--~~~~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 100 LIDIIKSYV--KEDAIFTGKEVTKIENE-TDKVT-IHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHhC--CCceEEECCEEEEEEec-CCcEE-EEECCCCEEecCEEEECCCcch
Confidence 344454444 25689999999999975 44464 7788888899999999877643
No 215
>PRK07846 mycothione reductase; Reviewed
Probab=90.70 E-value=0.93 Score=42.34 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=35.2
Q ss_pred HcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 55 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.|++++++++|++|+.+ ++.+. |.+.+|+++++|.||+++...
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGVT-LRLDDGSTVEADVLLVATGRV 261 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEEE-EEECCCcEeecCEEEEEECCc
Confidence 568999999999999874 33343 666678889999999998753
No 216
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=90.43 E-value=1.1 Score=41.87 Aligned_cols=53 Identities=8% Similarity=0.151 Sum_probs=40.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|++.|++|+++++|++|+.+ ++.+. +.. +| +++++|.||+++..
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~v~-~~~-~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQAL-FEY-EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCEEE-EEE-CCceEEEEeCEEEEecCC
Confidence 45667788888899999999999999863 33232 333 44 36899999999875
No 217
>PRK13748 putative mercuric reductase; Provisional
Probab=90.38 E-value=0.96 Score=43.43 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
..+.+.+.+.|++.|++|+++++|++|+.+ ++.+. +.+.++ ++++|.||+++..
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~~~-v~~~~~-~i~~D~vi~a~G~ 363 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGEFV-LTTGHG-ELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEE-EEecCC-eEEeCEEEEccCC
Confidence 356677888898899999999999999874 44342 555455 6999999999875
No 218
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.13 E-value=0.99 Score=44.03 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHc--------C-----cEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSL--------G-----GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~--------g-----~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 99 (301)
..+++.|.+.+++. | ++|..++.|+++..+ +|+|.+|.. .+|+ .+.|+.||+|+..
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 45788888888766 6 999999999999974 677777754 2453 5789999999985
No 219
>PLN02815 L-aspartate oxidase
Probab=89.98 E-value=0.86 Score=44.11 Aligned_cols=57 Identities=9% Similarity=0.038 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCC---cEEEEEEe---CCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG---TVKNFLLT---NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g---~v~~V~~~---~g~--~~~ad~VI~a~p~ 99 (301)
..++..|.+.++++ |++|+.++.|+++..+++| +|.+|... +|+ .+.|+.||+|+.-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG 220 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGG 220 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCc
Confidence 45788888888664 8999999999999975444 26788653 453 4689999999974
No 220
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.84 E-value=0.35 Score=46.91 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=43.4
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.|.+.|++.|.++++++.+++|.. ++++.+|+..||..+.||.||.++..
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GI 241 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccc
Confidence 466788889999999999999997 45688899999999999999998854
No 221
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=89.68 E-value=0.79 Score=39.91 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHcCcEEEecceeeEEEec-CCCcEEEEEEeC--Cc----EEecCEEEEccChhhHhhc
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~-~~g~v~~V~~~~--g~----~~~ad~VI~a~p~~~l~~l 105 (301)
-|...++..+.+|++++.|++|..+ +++++++|++.+ +. ++.++.||++...--..+|
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~L 262 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRL 262 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHH
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhh
Confidence 3445554448999999999999663 456788887653 33 4678999998876443343
No 222
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=89.41 E-value=1.6 Score=40.85 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+.+.+.+ +.|+++++++.|++|+.+ ++.+. |++.+|+++++|.||+++...
T Consensus 212 ~~~~l~~~~-~~gI~i~~~~~V~~i~~~-~~~v~-v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 212 ISDRFTEIA-KKKWDIRLGRNVTAVEQD-GDGVT-LTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHHH-hcCCEEEeCCEEEEEEEc-CCeEE-EEEcCCCEEEcCEEEEeeccC
Confidence 334444433 468999999999999974 33353 666678889999999998753
No 223
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.20 E-value=1.3 Score=42.91 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHHcC----cEEEecceeeEEEecCCCcEEEEEEeC---Cc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g----~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~--~~~ad~VI~a~p~~ 100 (301)
..|+..|.+.+++.+ ++|..++.|+++..+++|+|.+|...+ |+ .+.|+.||+|+.-.
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 199 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGP 199 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCC
Confidence 457778877765543 789999999999985568888887643 43 46899999999763
No 224
>PRK12831 putative oxidoreductase; Provisional
Probab=89.15 E-value=1.5 Score=41.18 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=28.0
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
|..++||.+||-+... ..+..|+..|+.||..|.+.+.
T Consensus 424 Ts~pgVfAaGD~~~g~--~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 424 TSKEGVFAGGDAVTGA--ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCCCEEEeCCCCCCc--hHHHHHHHHHHHHHHHHHHHhc
Confidence 3457888888876532 4678888888888888877653
No 225
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=89.13 E-value=0.61 Score=41.83 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=37.3
Q ss_pred CCCcccchHHHHHHHH------HcCcEEEecceeeEEEecCCCcEEEEEEeC---C--cEEecCEEEEccCh
Q 022185 39 GNPPERLCLPIVEHIQ------SLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 99 (301)
Q Consensus 39 GG~~~~l~~~l~~~l~------~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 99 (301)
||++..++++|.+.+= +...+|+.+++|++++.+++|.+. +++.+ | ++.++|.||+||..
T Consensus 269 ~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 269 GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEECCCCCeEEEecCEEEEcCCc
Confidence 4555566766665432 244689999999999997755564 66654 2 46799999999853
No 226
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=88.81 E-value=0.78 Score=43.79 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=34.9
Q ss_pred HcCcEEEecceeeEEEecCCCcEEEEEEeCC-c---EEecCEEEEccCh
Q 022185 55 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPV 99 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~---~~~ad~VI~a~p~ 99 (301)
+.|.+|+++++|++|..+ ++++++|++.++ + ...++.||++...
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGA 253 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence 467999999999999984 677888887543 2 2578999998776
No 227
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.71 E-value=1.4 Score=42.60 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=43.6
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEE---eCC--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~ 99 (301)
..|++.|.+.+.+. +++|..++.|+++..+ +|+|.+|.. .+| ..+.|+.||+|+.-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 45778888877664 7899999999999984 677777654 356 35789999999975
No 228
>PRK09077 L-aspartate oxidase; Provisional
Probab=88.68 E-value=2 Score=41.09 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHc-CcEEEecceeeEEEecC-----CCcEEEEEEe---CCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~-----~g~v~~V~~~---~g~--~~~ad~VI~a~p~~ 100 (301)
..+...|.+.++++ |++|+.++.|+++..++ +|+|.+|... +|+ .+.|+.||+++...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 45777888877664 89999999999998743 3678888753 354 47899999998763
No 229
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.65 E-value=1.6 Score=42.80 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
|..++||.+||-+... ..+..|+..|+.||..|.+.++
T Consensus 615 Ts~~gVfAaGD~~~g~--~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVRGA--DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCCCC--cHHHHHHHHHHHHHHHHHHHhC
Confidence 4467899999987542 4678899999999999988765
No 230
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=88.57 E-value=2.2 Score=41.21 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEE---eCC--cEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g--~~~~ad~VI~a~p~ 99 (301)
..|++.|.+.+.+ .++++..++.|+++..+ +|+|.+|.. .+| ..+.|+.||+|+.-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 5688888887765 47899999999999984 677877764 255 35789999999875
No 231
>PRK06475 salicylate hydroxylase; Provisional
Probab=88.50 E-value=1.8 Score=39.65 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred cchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEE---eCCcEEecCEEEEccChhh
Q 022185 44 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 44 ~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~~~~ad~VI~a~p~~~ 101 (301)
.|.+.|.+.+++ .|++|+++++|++++.+++ .+. |++ .+++++++|.||-|=...-
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~-~v~-v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGN-SIT-ATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCC-ceE-EEEEeCCCCcEEecCEEEECCCccH
Confidence 455667777755 4789999999999998544 353 544 2345789999998876643
No 232
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.21 E-value=1.9 Score=40.49 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
+..++||.+||-.... ..+..|+..|+.||..|.+.++
T Consensus 429 T~~~gVfa~GD~~~~~--~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 429 TTNPKIFAGGDAVRGA--DLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCCEEEECCcCCCc--cHHHHHHHHHHHHHHHHHHHhc
Confidence 3357889999877542 3567788889999988887664
No 233
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.05 E-value=1.8 Score=40.73 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-----CC---------cEEecCEEEEccC
Q 022185 50 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----NG---------NVIDGDAYVFATP 98 (301)
Q Consensus 50 ~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-----~g---------~~~~ad~VI~a~p 98 (301)
.+.+++.|+++++++.+++|.. ++|++++|++. +| +++++|.||+++.
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 4556678999999999999985 46777666542 22 3567777777654
No 234
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=87.83 E-value=1.9 Score=39.12 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEE--EEEeCCcEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.++++|++++++..|.+|+...+. +.. +...+++.+++|.+++.++.
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKGNT-LVVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEcccCc-ceeeEEEEeCCcEEEeeEEEEeecc
Confidence 46778888998999999999999999985332 322 35557778999999998875
No 235
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=87.79 E-value=1.9 Score=41.32 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=39.9
Q ss_pred HHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEE--eCCc-EEecCEEEEccChhh-HhhcC
Q 022185 47 LPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VIDGDAYVFATPVDI-LKLQL 106 (301)
Q Consensus 47 ~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~--~~g~-~~~ad~VI~a~p~~~-l~~l~ 106 (301)
+.|.+.+++. |++|+++++|++|+.++++ +. +++ .+|+ ++++|.||.+....- +.+.+
T Consensus 129 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~l 191 (547)
T PRK08132 129 GYLVERAQALPNIDLRWKNKVTGLEQHDDG-VT-LTVETPDGPYTLEADWVIACDGARSPLREML 191 (547)
T ss_pred HHHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHc
Confidence 4455666554 6899999999999986554 42 433 3453 689999999987643 34444
No 236
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=87.74 E-value=0.86 Score=45.73 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 50 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 50 ~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.++++|++++++++|++|+.. + +. |++.+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~-~-k~--V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTD-Q-KQ--VITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECC-C-CE--EEECCCcEeeCCEEEECCCCC
Confidence 45667789999999999999973 3 32 677788889999999999864
No 237
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=87.69 E-value=3.7 Score=42.38 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=44.9
Q ss_pred EeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe----CCcEEecCEEEEccCh
Q 022185 34 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT----NGNVIDGDAYVFATPV 99 (301)
Q Consensus 34 ~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~----~g~~~~ad~VI~a~p~ 99 (301)
..+++.. ..+...+.+.|+++|++|++++.|++|.. ++++.+|++. +++++++|.|++++..
T Consensus 344 V~vv~~~--~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 344 VAIIDAR--ADVSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred EEEEccC--cchhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 3444433 34556777888889999999999999985 3445556554 3467899999998765
No 238
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.16 E-value=2.2 Score=40.65 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeC---C--cEEecCEEEEccCh
Q 022185 49 IVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPV 99 (301)
Q Consensus 49 l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g--~~~~ad~VI~a~p~ 99 (301)
+.+.+++ +|++|++++.|++|.. +++++.+|++.+ | +++++|.||+++..
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 4566665 5999999999999986 345565676643 2 46899999998765
No 239
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=87.02 E-value=1.7 Score=41.45 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=36.8
Q ss_pred HcCcEEEecceeeEEEecCC--CcEEEEEEe---CCc--EEecCEEEEccChhhHhhc
Q 022185 55 SLGGEVRLNSRVQKIELNDD--GTVKNFLLT---NGN--VIDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~~--g~v~~V~~~---~g~--~~~ad~VI~a~p~~~l~~l 105 (301)
..+.+|++++.|++|+.+++ ++|++|++. +|+ +++|+.||+++..=...+|
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRL 283 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQI 283 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHH
Confidence 34489999999999998654 357777554 353 4789999999876444444
No 240
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.97 E-value=2.6 Score=39.44 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-------------------CCcEEecCEEEEccC
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------------------NGNVIDGDAYVFATP 98 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-------------------~g~~~~ad~VI~a~p 98 (301)
...+.+++.|++|++++.|++|..+ ++.+.+|++. +++++++|.||+++.
T Consensus 316 ~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G 384 (457)
T PRK11749 316 EEVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIG 384 (457)
T ss_pred HHHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECcc
Confidence 3456677889999999999999874 3333334431 123567777777654
No 241
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=86.88 E-value=0.19 Score=46.51 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC--C-cEEecCEEEEccChhhHhhcC
Q 022185 50 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G-NVIDGDAYVFATPVDILKLQL 106 (301)
Q Consensus 50 ~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g-~~~~ad~VI~a~p~~~l~~l~ 106 (301)
.+.+++.|++|++++.|+++.. +++++++|++.+ | .++.|+.||=++.-..+..+.
T Consensus 97 ~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~a 155 (428)
T PF12831_consen 97 DEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALA 155 (428)
T ss_dssp ------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 3444567999999999999999 466788888764 3 578999999888765555553
No 242
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=86.78 E-value=1.8 Score=39.59 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 52 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 52 ~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+++.|+++++++.|+.|+.. +. . |.+.+|+++.+|++|+|+...
T Consensus 67 ~~~~~~i~~~~g~~V~~id~~-~~-~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 67 WWQENNVHLHSGVTIKTLGRD-TR-E--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHCCCEEEcCCEEEEEECC-CC-E--EEECCCCEEEcCEEEEccCCC
Confidence 355689999999999999973 33 2 666788889999999999764
No 243
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=86.76 E-value=2.8 Score=40.80 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCC--CcEEEEEE---eCCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~--g~v~~V~~---~~g~--~~~ad~VI~a~p~~ 100 (301)
..+...+.+.+++.+++|+.++.|+++..+++ |+|.+|.. .+|+ .+.|+.||+|+...
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 34555566667677789999999999998542 67888865 2454 47899999999764
No 244
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.76 E-value=2.6 Score=36.41 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=39.0
Q ss_pred chHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEe---CC--cEEecCEEEEccCh
Q 022185 45 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~ 99 (301)
....+.+.++++ |+++++++.|++|+.+ + ++..+++. +| +++++|.||++++.
T Consensus 178 ~~~~~~~~l~~~~gv~~~~~~~v~~i~~~-~-~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 178 AEKILLDRLRKNPNIEFLWNSTVKEIVGD-N-KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred cCHHHHHHHHhCCCeEEEeccEEEEEEcc-C-cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 455667778777 9999999999999863 3 45445543 23 56899999998874
No 245
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=86.67 E-value=2.6 Score=38.86 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=34.7
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
+++.++|||-+||-... .+++..|..+|..+|+.|+.+++
T Consensus 445 ~~t~i~gLy~aGdGAG~--argI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 445 LSTSIKGLYPAGDGAGL--ARGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred ceeeecceEEccccccc--cchhHHHhhhhHHHHHHHHHHhc
Confidence 46678999999998864 37999999999999999998875
No 246
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=86.13 E-value=1.2 Score=40.20 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=38.8
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
+...+.+.+++.|++++.+ +|++|+.+ +. .|.+.+|+++++|++|+|+....
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~-~~---~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPD-RR---KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEecc-cC---EEEECCCCcccccEEEEccCCCC
Confidence 3334556666689999876 79999974 33 26777888899999999997644
No 247
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=85.40 E-value=3.3 Score=37.75 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCc--EEecCEEEEccChhh-HhhcCC
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGDAYVFATPVDI-LKLQLP 107 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~--~~~ad~VI~a~p~~~-l~~l~~ 107 (301)
.+...|.+.+.+.|++++++++++++...++..+ +|++. +|+ ++++|.||-+=...- +.+.++
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~ 170 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIP 170 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcC
Confidence 4456777777778999999999988865333334 36664 774 689999887766533 344443
No 248
>PRK06126 hypothetical protein; Provisional
Probab=84.48 E-value=3.4 Score=39.52 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=37.9
Q ss_pred hHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChhh
Q 022185 46 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 46 ~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 101 (301)
-..|.+.+++ .|++|+++++|++|+.++++ |+ +++. +|+ ++++|+||.+-...-
T Consensus 129 ~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 129 EPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEEEECCCCcEEEEEEEEEEecCCcch
Confidence 3345555554 47899999999999986444 53 4442 353 689999999887644
No 249
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.18 E-value=4 Score=38.09 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=38.5
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC--cEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++ ++|+++++|++|+.+++..++ ++..+| +++++|.||+++..
T Consensus 211 ~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~-~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 211 EVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVE-ELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEE-EEEcCCceEEEEeCEEEEccCC
Confidence 3556677778778 999999999999874332232 333233 46899999998765
No 250
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=84.15 E-value=1.7 Score=43.91 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 50 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 50 ~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.++++|+++++++.|++|+.. .++ |.+.+|+++++|++|+|+...
T Consensus 66 ~~~~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 66 EGFYEKHGIKVLVGERAITINRQ--EKV--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHHhCCCEEEcCCEEEEEeCC--CcE--EEECCCcEEECCEEEECCCCC
Confidence 34566789999999999999873 333 677788889999999999863
No 251
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=83.47 E-value=4.4 Score=35.75 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..|++.+.+..+.-|.++.. ..|.+++..++ .. .|++.+|+ +++++||+|+....
T Consensus 61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F-~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 61 PELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PF-KVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eE-EEEECCCe-EEEeEEEECcCCcc
Confidence 46788888888778888888 78888887432 33 48887776 99999999998744
No 252
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.90 E-value=2.3 Score=37.48 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=41.9
Q ss_pred cchHHHHHHHHH------cCcEEEecceeeEEEecCCCcEEEEEEeC--Cc--EEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQS------LGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~------~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g~--~~~ad~VI~a~p~ 99 (301)
-|+.+|...+++ .-.+|.++++|+.|.. .+|+|.+|+..| |+ .+.++.||+++.-
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGG 204 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCC
Confidence 467777777664 3368999999999997 588898888753 43 4678999988764
No 253
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.89 E-value=2.3 Score=39.52 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCcEEe--cCEEEEccChh
Q 022185 50 VEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVID--GDAYVFATPVD 100 (301)
Q Consensus 50 ~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~--ad~VI~a~p~~ 100 (301)
.+.+++.|+++++++.|++|+.+ +..+. +... +|++++ +|++|+++...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~-~~~v~-~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAK-NKTIT-VKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECC-CCEEE-EEECCCCCEEEecCCEEEECCCCC
Confidence 45677789999999999999974 43332 3321 255666 99999999864
No 254
>PRK07538 hypothetical protein; Provisional
Probab=82.80 E-value=3.7 Score=37.73 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=36.8
Q ss_pred hHHHHHHHHH-cC-cEEEecceeeEEEecCCCcEEEEEEeCC-----cEEecCEEEEccChhh
Q 022185 46 CLPIVEHIQS-LG-GEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 101 (301)
Q Consensus 46 ~~~l~~~l~~-~g-~~I~l~~~V~~I~~~~~g~v~~V~~~~g-----~~~~ad~VI~a~p~~~ 101 (301)
.+.|.+.+.+ .| ..|+++++|++|+.++++.+ +.+.++ ++++||.||-|-...-
T Consensus 105 ~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 105 QMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEECCCCCH
Confidence 3456665544 36 47999999999998666633 333332 4789999998877643
No 255
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=82.20 E-value=1.4 Score=41.49 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhc
Q 022185 49 IVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 49 l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 105 (301)
+.+.|+. .+..|. ...|.++...++.+|++|++.+|..+.|+.||+|+..-.-.++
T Consensus 106 mk~~le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 106 MKNELENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 3345544 334443 4457778874333588999999999999999999986544343
No 256
>PLN02661 Putative thiazole synthesis
Probab=82.01 E-value=6.6 Score=35.35 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=41.0
Q ss_pred ccchHHHHHHHH-HcCcEEEecceeeEEEecCCCcEEEEEEe------C--C------cEEecCEEEEccC
Q 022185 43 ERLCLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLT------N--G------NVIDGDAYVFATP 98 (301)
Q Consensus 43 ~~l~~~l~~~l~-~~g~~I~l~~~V~~I~~~~~g~v~~V~~~------~--g------~~~~ad~VI~a~p 98 (301)
..++..|.+.+. +.|++|+.++.|.++..+ ++++.+|.+. + + ..++|++||+++.
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATG 241 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCG 241 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCC
Confidence 445667776554 368999999999999984 6677788741 1 1 2579999999987
No 257
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.94 E-value=2 Score=34.69 Aligned_cols=51 Identities=29% Similarity=0.395 Sum_probs=36.5
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCcE----EEE---EEeCCcEEecCEEEEccCh
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELNDDGTV----KNF---LLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v----~~V---~~~~g~~~~ad~VI~a~p~ 99 (301)
.+.+.++..+.+++++++|.+|+.. ++.+ ..+ ...++.++.+|++|+|+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeecccccccccc-ccccccCcccceeeccCCceEecCCeeeecCcc
Confidence 5565666789999999999999984 4421 012 2224567999999999884
No 258
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=81.82 E-value=4.4 Score=36.72 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 51 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 51 ~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+++.|++++++++|++|+.. + +. |.+ +|+++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~-~-~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAE-A-QV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECC-C-CE--EEE-CCeEEeCCEEEECCCCC
Confidence 3445679999999999999973 3 32 455 66689999999999863
No 259
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=81.39 E-value=6 Score=36.90 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=42.7
Q ss_pred chHHHHHHHHHcC--cEEEecceeeEEEecCCCcEEEEEEeCCcE--EecCEEEEccCh
Q 022185 45 LCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~g--~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~--~~ad~VI~a~p~ 99 (301)
+-+-+...+++.+ -+|++++.|+.+..++++....|++.+|.+ ++||+||+++..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 6777777887755 488899999999987766555588877755 459999999876
No 260
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=81.07 E-value=3 Score=36.91 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=49.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcE--EecCEEEEccChhhHhhc
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~--~~ad~VI~a~p~~~l~~l 105 (301)
++-++|.+.+++.|+.+..+-+|.+.+.. +|+|+.|.+.++.. ++||.+|+++..-.-+.|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 67889999999999999999999999984 67788888887644 578888888765443333
No 261
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=80.98 E-value=5 Score=40.17 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=27.1
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
+..++||.+||-.... ..+.-|+..|+.||..|.+.+
T Consensus 713 Ts~~gVfA~GD~~~g~--~~vv~Av~~G~~AA~~I~~~L 749 (752)
T PRK12778 713 SSIPGIYAGGDIVRGG--ATVILAMGDGKRAAAAIDEYL 749 (752)
T ss_pred CCCCCEEEeCCccCCc--HHHHHHHHHHHHHHHHHHHHh
Confidence 3356888888877532 467788888888888887765
No 262
>PLN02985 squalene monooxygenase
Probab=80.57 E-value=54 Score=31.25 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEe--CCcE--EecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT--NGNV--IDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g~~--~~ad~VI~a~p~~ 100 (301)
.+.+.|.+.+++. |++++.+ +|+++..+ ++.+.+|++. +|++ ++||.||.+-...
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~ 207 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPLTVVCDGCY 207 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCEEEECCCCc
Confidence 3567777777654 6788765 57777663 4555566653 5643 5689999887653
No 263
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.50 E-value=6.1 Score=37.60 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEe---CC--cEEecCEEEEccCh
Q 022185 47 LPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 47 ~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~ 99 (301)
+.+.+.+++ .|++|++++.|++|.. +++++.+|++. +| +++++|.|+.++..
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 344556654 5999999999999997 34566666654 23 35889999998765
No 264
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=80.50 E-value=1.7 Score=39.53 Aligned_cols=67 Identities=21% Similarity=0.151 Sum_probs=50.0
Q ss_pred cCCCcccchHHHH----HHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcC
Q 022185 38 DGNPPERLCLPIV----EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 106 (301)
Q Consensus 38 ~GG~~~~l~~~l~----~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~ 106 (301)
++.|..-|.+-|. +.+++.|+.|+-|+.|.++... .+++. +++.||.+.+.|.||+++...--..|.
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~-~~nl~-lkL~dG~~l~tD~vVvavG~ePN~ela 454 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKC-CKNLV-LKLSDGSELRTDLVVVAVGEEPNSELA 454 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhh-ccceE-EEecCCCeeeeeeEEEEecCCCchhhc
Confidence 5666445555554 5677799999999999999985 44464 788899999999999998653333443
No 265
>PRK02106 choline dehydrogenase; Validated
Probab=80.25 E-value=2.4 Score=40.80 Aligned_cols=44 Identities=5% Similarity=0.027 Sum_probs=34.5
Q ss_pred HcCcEEEecceeeEEEecCCCcEEEEEEeCC--c--EEecCEEEEccCh
Q 022185 55 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--N--VIDGDAYVFATPV 99 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g--~--~~~ad~VI~a~p~ 99 (301)
+.+.+|++++.|++|..+ ++++++|++.++ + .+.++.||++...
T Consensus 213 ~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 213 RPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGA 260 (560)
T ss_pred CCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCC
Confidence 467999999999999995 567888887542 1 3578999998875
No 266
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=80.20 E-value=4.7 Score=39.56 Aligned_cols=41 Identities=29% Similarity=0.295 Sum_probs=32.9
Q ss_pred EEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 59 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 59 ~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.++.+++|++|+.. ++.|+ |++.+|+++++|.||.|-...-
T Consensus 208 ~i~~g~~V~~I~~~-~d~Vt-V~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 208 VIRNESNVVDFEDS-GDKVT-VVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred EEEcCCEEEEEEEe-CCEEE-EEECCCCEEEcCEEEECCCCCc
Confidence 47889999999985 44464 7888888899999999877644
No 267
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.05 E-value=6.2 Score=38.67 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=28.6
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
|..++||.+||-.... ..+.-|+..|+.||+.|...+.
T Consensus 598 Ts~~gVfA~GD~~~g~--~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 598 THLKKVFAGGDAVHGA--DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cCCCCEEEcCCCCCCc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 3457899999977542 4567888899999998887763
No 268
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=79.82 E-value=6.1 Score=37.12 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC--C--cEEecCEEEEccCh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 99 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 99 (301)
.+.+.+.+.|+++ ++|+++++|++|+.++++ + .+++.+ | +++++|.||+++..
T Consensus 216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecc
Confidence 4456677788777 999999999999875343 4 255443 2 36899999999876
No 269
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=79.69 E-value=7 Score=38.44 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=37.4
Q ss_pred chHHHHHHH-HHcCcEEEecceeeEEEecCCCcEEEEEEeC-------C--------cEEecCEEEEccChh
Q 022185 45 LCLPIVEHI-QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-------G--------NVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l-~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-------g--------~~~~ad~VI~a~p~~ 100 (301)
+.+.+.+.+ +++|++|++++.|++|+.++++....+.+.+ + +++++|.||+++...
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 444555554 5689999999999999975333211243321 1 268999999998764
No 270
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.38 E-value=6 Score=35.50 Aligned_cols=51 Identities=24% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe--------------------CCcEEecCEEEEccCh
Q 022185 47 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--------------------NGNVIDGDAYVFATPV 99 (301)
Q Consensus 47 ~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--------------------~g~~~~ad~VI~a~p~ 99 (301)
..+.+.|+++|+++++++.|++|+.+ +++..|++. +++++++|.||+++..
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~ 284 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGE 284 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECccc
Confidence 45566788899999999999999853 334344421 1235777777776654
No 271
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=78.25 E-value=4.9 Score=38.41 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHcC--cEEEecceeeEEEecCC----CcEEEEEEe-CCc--EEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLG--GEVRLNSRVQKIELNDD----GTVKNFLLT-NGN--VIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g--~~I~l~~~V~~I~~~~~----g~v~~V~~~-~g~--~~~ad~VI~a~p~~ 100 (301)
..+.+-|....+..+ ..|++|++|++|+..++ |++ .|++. +|+ +..+|.||+++...
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~ 149 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHF 149 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SS
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCc
Confidence 345555665555544 47999999999998654 344 36664 342 35689999988653
No 272
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=78.00 E-value=3.2 Score=40.77 Aligned_cols=47 Identities=28% Similarity=0.174 Sum_probs=27.8
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
+++...+.+++.|+++++++.|.. + +...+. ...+|.||+++.....
T Consensus 379 ~~~~~~~~~~~~Gv~~~~~~~v~~-----~-----i~~~~~-~~~~DavilAtGa~~~ 425 (654)
T PRK12769 379 LLARRREIFSAMGIEFELNCEVGK-----D-----ISLESL-LEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHHHHHHCCeEEECCCEeCC-----c-----CCHHHH-HhcCCEEEEeCCCCCC
Confidence 344445566677888888886621 0 111111 1368999999876543
No 273
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=77.92 E-value=3.9 Score=38.36 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=31.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
.+.+...+.+++.|+++++++.|.+- +.+.+ ....+|.||+++.....
T Consensus 192 ~~~~~~~~~~~~~Gv~~~~~~~v~~~----------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 192 AVLSRRREIFTAMGIEFHLNCEVGRD----------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHHHHHHHHCCCEEECCCEeCCc----------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 34455667777889999999877321 11111 12468999999987553
No 274
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=77.33 E-value=7.1 Score=36.01 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHcCcEEEecceeeEEEecCCCcEEEEEEe-CCcEEe--cCEEEEccCh
Q 022185 53 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVID--GDAYVFATPV 99 (301)
Q Consensus 53 l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-~g~~~~--ad~VI~a~p~ 99 (301)
+++.|++++++++|++|+.. ++.+. +... ++++++ +|++|+|+..
T Consensus 54 ~~~~gv~~~~~~~V~~id~~-~~~v~-~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDE-RQTVV-VRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred HHhcCCeEEecCEEEEEECC-CCEEE-EEECCCCCEEecCCCEEEECCCC
Confidence 36789999999999999973 44342 4332 245677 9999999976
No 275
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=77.26 E-value=3.6 Score=38.43 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=30.9
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
.++..++||.+||-+... ..+.-|+..|+.||..|.+.
T Consensus 411 ~~Ts~~~VfA~GD~~~g~--~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILGA--ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CccCCCCEEEecCCCCCc--HHHHHHHHHHHHHHHHHHhh
Confidence 356678999999988532 46789999999999998765
No 276
>PRK12831 putative oxidoreductase; Provisional
Probab=77.06 E-value=3.7 Score=38.51 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=31.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCC-cEEecCEEEEccChh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD 100 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g-~~~~ad~VI~a~p~~ 100 (301)
+.+...+.+++.|+++++++.|.+ . +.+.+. +.+.+|.||+++..+
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~~-------~---v~~~~~~~~~~~d~viiAtGa~ 239 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVGK-------T---VTIDELLEEEGFDAVFIGSGAG 239 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEECC-------c---CCHHHHHhccCCCEEEEeCCCC
Confidence 566666778889999999996621 1 222232 335699999999874
No 277
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.91 E-value=5.7 Score=35.50 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=46.5
Q ss_pred CCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 40 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 40 G~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
||-+.+.+.+.+.++..|++++.++.|+++..+.+|-.. +.+..|....+|.++.|+.-
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecC
Confidence 445667788889999999999999999999998777433 45556655569999999864
No 278
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=75.94 E-value=8.2 Score=39.98 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-----------------CC--cEEecCEEEEccCh
Q 022185 51 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------------NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 51 ~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 99 (301)
+.+++.|++|++++.+++|..+++|++++|++. .| .++++|.||+++..
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 345678999999999999987567777666542 12 25899999999864
No 279
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=75.87 E-value=4.6 Score=37.38 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=37.8
Q ss_pred HHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 51 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 51 ~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
+..++.|+++++++.|++++.. +. .|.+.+|++++.+..|+++..
T Consensus 135 e~Yke~gIe~~~~t~v~~~D~~-~K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 135 EFYKEKGIELILGTSVVKADLA-SK---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhHhhcCceEEEcceeEEeecc-cc---EEEeCCCceeecceEEEeecC
Confidence 3455679999999999999984 43 378889999999999999877
No 280
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=75.68 E-value=4.9 Score=37.77 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=32.8
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
..+..++||.+||-+... ..+..|+..|+.||..|.+.+.
T Consensus 426 ~~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 346678999999988642 3678899999999999998874
No 281
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=75.02 E-value=4.9 Score=39.38 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
+.++..=-...+++|++++++.+|++|..+ .+. |+++.|+++..|..|+++..
T Consensus 59 edi~l~~~dwy~~~~i~L~~~~~v~~idr~--~k~--V~t~~g~~~~YDkLilATGS 111 (793)
T COG1251 59 EDISLNRNDWYEENGITLYTGEKVIQIDRA--NKV--VTTDAGRTVSYDKLIIATGS 111 (793)
T ss_pred HHHhccchhhHHHcCcEEEcCCeeEEeccC--cce--EEccCCcEeecceeEEecCc
Confidence 334333335566799999999999999983 333 78888999999999998754
No 282
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.80 E-value=11 Score=38.60 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHc----CcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccCh
Q 022185 43 ERLCLPIVEHIQSL----GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 43 ~~l~~~l~~~l~~~----g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~ 99 (301)
..+.+.|.+.++++ ++++..++.++++.. ++|++.||.. .+|+ .+.|+.||+++.-
T Consensus 139 ~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 139 KDVKKALYRVLRQRSMRERIRIENRLMPVRVLT-EGGRAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred hhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEe-eCCEEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 56778888887654 467777777778876 3677878764 2464 4789999999975
No 283
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=72.92 E-value=13 Score=35.77 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHcCcEEEecceeeEEEecCCCcEEEEEE---------e-------CC--cEEecCEEEEccCh
Q 022185 53 IQSLGGEVRLNSRVQKIELNDDGTVKNFLL---------T-------NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 53 l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~---------~-------~g--~~~~ad~VI~a~p~ 99 (301)
.++.|++|++++.+++|..++++.+ +|++ . .| .++++|.||+++..
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 4457999999999999987545533 3321 1 12 36899999999875
No 284
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=72.90 E-value=7.8 Score=32.47 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=44.9
Q ss_pred eeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 35 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 35 ~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
.+|+|=..--|++.+.+.-++.|-+|..++ |.++... ...- .+.+ +.+.+.+|.||+++.+..
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~s-skpF-~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITET-VSKVDLS-SKPF-KLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeeee-hhhcccc-CCCe-EEEe-cCCceeeeeEEEecccce
Confidence 345443234688999988888898988876 8888874 3223 2555 555789999999998855
No 285
>PRK13984 putative oxidoreductase; Provisional
Probab=72.07 E-value=11 Score=36.60 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
|..++||.+||-+.. ..+-.|+..|+.||..|.+.+
T Consensus 566 Ts~~gVfAaGD~~~~---~~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 566 TSIPWLFAGGDIVHG---PDIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred cCCCCEEEecCcCCc---hHHHHHHHHHHHHHHHHHHHh
Confidence 446788888887754 245567888888888887765
No 286
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=72.01 E-value=6.1 Score=40.92 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=34.5
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
..|..++||.+||-+... ..+..|+..|+.||..|.+.+...
T Consensus 716 ~~Ts~pgVFAaGDv~~G~--~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTGG--ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred cCCCCCCEEEecCcCCCc--cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356789999999987542 478899999999999999987543
No 287
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=71.38 E-value=4.8 Score=38.72 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCCCCCeEEeecccc----CCCC---CchhHHHHHHHHHHHHHHHHhhhhhh
Q 022185 244 RSPVEGFYLAGDYTK----QKYL---ASMEGAVLSGKLCAQAIVQDYVLLAA 288 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~---~~v~gA~~SG~~aA~~i~~~~~~~~~ 288 (301)
..||+|||.||+-+. ..|+ .++-.|+.+|++|++++.+...-++|
T Consensus 504 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~~~~ 555 (557)
T PRK12844 504 GSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSADPP 555 (557)
T ss_pred CCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCCCCC
Confidence 468999999997543 2233 26888999999999999877554443
No 288
>PRK13984 putative oxidoreductase; Provisional
Probab=70.15 E-value=6.9 Score=38.03 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+++...+.+++.|+++++++.|.. + +...+. ..++|+||+++...
T Consensus 334 ~~~~~~~~~~~~~gv~~~~~~~v~~-~---------~~~~~~-~~~yD~vilAtGa~ 379 (604)
T PRK13984 334 EALDKDIAFIEALGVKIHLNTRVGK-D---------IPLEEL-REKHDAVFLSTGFT 379 (604)
T ss_pred HHHHHHHHHHHHCCcEEECCCEeCC-c---------CCHHHH-HhcCCEEEEEcCcC
Confidence 3445555677788999999988742 0 111111 24799999999864
No 289
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=70.02 E-value=6.5 Score=37.91 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ +. .++-.|+.+|++|++.+.+..
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999986532 21 157788999999999987653
No 290
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=69.79 E-value=8 Score=35.08 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 47 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 47 ~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
+.+.+.+ +..|+++++|++++ +++ | ++.+|++++||.||-+.+.+
T Consensus 93 ~~l~~~l---~~~i~~~~~V~~v~--~~~-v---~l~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 93 EGLLQAF---PEGVILGRKAVGLD--ADG-V---DLAPGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHhh---cccEEecCEEEEEe--CCE-E---EECCCCEEEeeEEEECCCCC
Confidence 4444444 33489999999994 343 3 34688899999999998865
No 291
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=69.76 E-value=6.2 Score=35.88 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=28.9
Q ss_pred CCCCeEEeeccccCCC-CC--chhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQKY-LA--SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~-~~--~v~gA~~SG~~aA~~i~~~~ 283 (301)
-+|||||||+-..-.- -| .++-|+.||..|++.+...+
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999999754321 12 58999999999999887643
No 292
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=69.44 E-value=11 Score=35.02 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=31.5
Q ss_pred HHcCcEEEecceeeEEEecCCCcEEEEEEeC-Cc--EEecCEEEEccChh
Q 022185 54 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 100 (301)
Q Consensus 54 ~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~-g~--~~~ad~VI~a~p~~ 100 (301)
++.|++++++++|++|+.. +.+|. +...+ ++ ++++|++|+|+...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~-~~~v~-~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDE-RQTVT-VLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECC-CCEEE-EEECCCCcEEeeecCEEEECCCCC
Confidence 4479999999999999984 44332 33322 22 36889999998764
No 293
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=69.41 E-value=6.8 Score=35.76 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCchhHHHHHHH
Q 022185 195 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLSGK 273 (301)
Q Consensus 195 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-p~~~l~~aGd~~~~~~~~~v~gA~~SG~ 273 (301)
.+...+-+..|++.. .++++.-..- ...|...+- ....+++ .++||||||+-.... |. +-|..+|.
T Consensus 312 ~~Q~~~~r~IpGLe~-----a~~~r~Gy~~--ey~~v~~~~---l~~~l~~k~~~~lf~AGqi~G~~--Gy-~eaaa~G~ 378 (392)
T PF01134_consen 312 DVQKRIFRSIPGLEN-----AEILRPGYAH--EYDFVDPPQ---LLNTLETKKIPGLFFAGQINGTE--GY-EEAAAQGL 378 (392)
T ss_dssp HHHHHHHTTSTTTTT-------EEE--EEE--EEEEE-GGG---BBTTSBBSSSBTEEE-GGGGTB---SH-HHHHHHHH
T ss_pred HHHHHHhhcCCChhc-----ChhhheEEee--eeeEEehhh---cccceEECCCCCceECCCCcchh--HH-HHHHHHHH
Confidence 456677778898862 3444322110 001111111 1123333 379999999988763 44 55556899
Q ss_pred HHHHHHHHHh
Q 022185 274 LCAQAIVQDY 283 (301)
Q Consensus 274 ~aA~~i~~~~ 283 (301)
.|+..+....
T Consensus 379 ~ag~na~~~~ 388 (392)
T PF01134_consen 379 IAGINAARRL 388 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 294
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=69.31 E-value=7.6 Score=36.29 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
..+..++||.+||-+... ..+..|+..|+.||..|.+.+.
T Consensus 413 ~~Ts~~~VfA~GD~~~~~--~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTGA--ATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CccCCCCEEEeCCcCCCc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999988531 4678899999999999988774
No 295
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=69.04 E-value=6.3 Score=33.77 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=29.9
Q ss_pred CCCeEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 022185 247 VEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~--~---~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
.|+||.||-.+..-+ | .-+-|-+.||++||+.|+++++.
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 689999997654322 1 35677888999999999998864
No 296
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=68.91 E-value=7.4 Score=36.75 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.2
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
..+..++||.+||-+... ..+.-|+..|+.||..|.+.+.
T Consensus 440 ~~Ts~~gVfAaGD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRGQ--SLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred ceECCCCEEEeeccCCCc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999987532 4677899999999999998774
No 297
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=68.64 E-value=6.8 Score=40.24 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=34.4
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
.|..++||.+||-+... ..+.-|+..|+.||..|.+.++..
T Consensus 589 ~Ts~pgVFAaGD~~~G~--~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 589 RTSIKGVYSGGDAARGG--STAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred ccCCCCEEEEEcCCCCh--HHHHHHHHHHHHHHHHHHHHhccc
Confidence 46678999999988652 468899999999999999987754
No 298
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=68.64 E-value=7.6 Score=38.08 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.0
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
+++...+.+++.|+++++++.|.. + +...+ ....+|.||+++.....
T Consensus 362 ~~~~~~~~~~~~Gv~~~~~~~v~~-----~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 362 VLSQRREIFTAMGIDFHLNCEIGR-----D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHHHHHHHCCeEEEcCCccCC-----c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 344455667778999998887631 1 11111 12468999999887543
No 299
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=68.24 E-value=7.7 Score=37.70 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ +. .++-.|+..|++|++.+.+..
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 6799999999986532 21 257789999999999987654
No 300
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=68.07 E-value=6.4 Score=33.67 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=29.1
Q ss_pred CCCCeEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~--~---~~v~gA~~SG~~aA~~i~~~~ 283 (301)
-+|+||.||-.+..-+ | ..+-|-+.||++||+.|++++
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 3689999997654332 1 356777889999999999876
No 301
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=67.03 E-value=8.1 Score=34.44 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=48.7
Q ss_pred ecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe---CCc--EEecCEEEEccChhh
Q 022185 37 LDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 37 ~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g~--~~~ad~VI~a~p~~~ 101 (301)
+--||.+...+.++++++++|++++-.....+|++.++|+. .|... .++ +-+.|.|+.++.-..
T Consensus 232 ~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 232 LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhcccc
Confidence 33456678889999999999999999999999999888864 24432 222 347899999987644
No 302
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=66.86 E-value=14 Score=34.24 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=31.4
Q ss_pred CCCCCeEEeeccccCC---CCCchhHHHHHHHHHHHHHHHHhh
Q 022185 245 SPVEGFYLAGDYTKQK---YLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~---~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
+..+|||.+||-+... ++....-|+..|..+|+.|...+.
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 4578999999987642 234567789999999999998874
No 303
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=66.64 E-value=5.8 Score=33.13 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=30.4
Q ss_pred CCCCeEEeeccccCCC--C---CchhHHHHHHHHHHHHHHHHhhh
Q 022185 246 PVEGFYLAGDYTKQKY--L---ASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~--~---~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
-.||||.||-.++.-+ | .-+-|-+.||+.+|+.|++++..
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 3689999997654322 1 35678889999999999998764
No 304
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=66.24 E-value=25 Score=32.60 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCchhHHHHHHH
Q 022185 195 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLSGK 273 (301)
Q Consensus 195 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-p~~~l~~aGd~~~~~~~~~v~gA~~SG~ 273 (301)
.....+.+.+|++. .+++++.-+.- +..|...|... .+...+ ..+||||||+-+... |-.-|+.+|.
T Consensus 286 ~~Q~~~~r~Ipgle-----~a~~~r~G~~~--~~~~i~~p~~l--~~~l~~k~~~~l~~AGqi~g~~---Gy~ea~a~G~ 353 (436)
T PRK05335 286 GEQKRVFRMIPGLE-----NAEFVRYGVMH--RNTFINSPKLL--DPTLQLKKRPNLFFAGQITGVE---GYVESAASGL 353 (436)
T ss_pred HHHHHHHhcccchh-----ceEEEeceEEe--eccccCChhhC--chhccccCCCCEEeeeeecCch---HHHHHHHHHH
Confidence 35566777889875 23444332210 01121122221 112222 468999999988653 3446667888
Q ss_pred HHHHHHHHHh
Q 022185 274 LCAQAIVQDY 283 (301)
Q Consensus 274 ~aA~~i~~~~ 283 (301)
.|+..+...+
T Consensus 354 ~Ag~n~~~~~ 363 (436)
T PRK05335 354 LAGINAARLA 363 (436)
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 305
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=66.23 E-value=17 Score=34.01 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=30.2
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+.. + .....|...|..+|..++.
T Consensus 300 ~~Ts~~~IyA~GD~~~~-~-~l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 300 SRTSVPGIYAAGDCTGV-L-PLASVAAMQGRIAMYHALG 336 (466)
T ss_pred cccCCCCEEEEeeccCC-c-cchhHHHHHHHHHHHHHcC
Confidence 45668999999999864 2 4678999999999999874
No 306
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=66.08 E-value=9.2 Score=38.30 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+++...+.+++.|++|++++.|. + .|++++.+...+|+||+++...
T Consensus 482 ~~~~~~~~~l~~~gv~~~~~~~v~--------~--~v~~~~l~~~~ydavvlAtGa~ 528 (752)
T PRK12778 482 KIVDVEIENLKKLGVKFETDVIVG--------K--TITIEELEEEGFKGIFIASGAG 528 (752)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEC--------C--cCCHHHHhhcCCCEEEEeCCCC
Confidence 455566677888999999998651 1 1334343445699999999874
No 307
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=66.07 E-value=12 Score=33.66 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++..+++|.+||-+.. +..+..|+..|..+|..|.+.+
T Consensus 312 ~t~~~~vyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 312 MTSREGVFAAGDVVTG--PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ccCCCCEEEEcccccC--cchHHHHHHHHHHHHHHHHHHH
Confidence 3456899999998753 2478899999999999998765
No 308
>PLN02785 Protein HOTHEAD
Probab=65.86 E-value=16 Score=35.38 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=29.7
Q ss_pred CCCCeEEeeccccCCCCC--chhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQKYLA--SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~~--~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++||..+-.++-+.-++ -+-.+++-|+++|+.|++++
T Consensus 541 GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 541 GVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred ccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 578999997777665442 46677888999999999875
No 309
>PRK10262 thioredoxin reductase; Provisional
Probab=65.83 E-value=5.2 Score=35.30 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
.++..++||.+||-+...+ ..+-.|+-.|..||..|.+.+..-
T Consensus 275 ~~t~~~~VyA~GD~~~~~~-~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY-RQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred cccCCCCEEECeeccCCCc-ceEEEEehhHHHHHHHHHHHHHhc
Confidence 3567899999999886533 245558889999999988877443
No 310
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=65.46 E-value=9.8 Score=37.30 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ +. .++-.|+..|++|++.+.+..
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 6799999999976433 21 157888999999999987653
No 311
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=65.28 E-value=13 Score=33.69 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHhhccCCc----eEeee-cCCCcccchHHHHHHHHHcCcEEEecceeeEEEec
Q 022185 14 SMQCILIALNRFLQEKHGS----KMAFL-DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELN 72 (301)
Q Consensus 14 sa~~~~~~~~~~~~~~~~~----~~~~~-~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~ 72 (301)
||..+..++-||.-+..|. .+.+- -.-+ +.|+.+|...|+.+|+++.+++.|..|+.+
T Consensus 194 Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQY-eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~ 256 (587)
T COG4716 194 SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQY-ESLVLPLITYLKSHGVDFTYDQKVEDIDVD 256 (587)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhcccccchH-HHHHHHHHHHHHHcCCceEeccEEeeeeec
Confidence 4444555555554333221 12221 2344 789999999999999999999999999984
No 312
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=65.10 E-value=25 Score=33.81 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+.+.+++.|++++ +++|+.|... +. ...|.+.+| .+.+|.+|+|+...
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~-~~-~~~V~~~~g-~~~a~~lVlATGa~ 113 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFD-GD-IKTIKTARG-DYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEec-CC-EEEEEecCC-EEEEeEEEECCCCc
Confidence 466777777777899985 7889999874 32 334666555 58999999999874
No 313
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=64.97 E-value=19 Score=33.78 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=46.2
Q ss_pred ecCCCcccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEEeC--C--cEEecCEEEEccCh
Q 022185 37 LDGNPPERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 99 (301)
Q Consensus 37 ~~GG~~~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 99 (301)
..|.....++.+|.+.+++ -+++|+-++.+.+|..+++..+.||.+.+ + .++.++.||+++.-
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 3444345788999988865 68999999999999985442454776643 2 35788999998864
No 314
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=64.89 E-value=8.3 Score=39.74 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+..++||.+||-... +..+..|+..|+.||..|+...
T Consensus 802 ~Ts~pgVFAaGD~a~G--P~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 802 ETNITNVFVIGDANRG--PATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred ccCCCCEEEEeCcCCC--ccHHHHHHHHHHHHHHHHhccc
Confidence 4567899999998743 2578999999999999998654
No 315
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=64.75 E-value=9.9 Score=36.64 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.+..+++|.+||-+.. +..+..|+..|+.||..|.+.+.
T Consensus 406 ~ts~~~Vfa~GD~~~g--~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 406 MTGRPGVFAGGDMVPG--PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred cCCCCCEEeccCcCCC--chHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999998753 25788999999999999988874
No 316
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=64.34 E-value=8.5 Score=37.26 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCCCCCeEEeecccc----CCCC---CchhHHHHHHHHHHHHHHHHhhhh
Q 022185 244 RSPVEGFYLAGDYTK----QKYL---ASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~---~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
..||+|||.||+-+. ..|+ .++-.|+.+|++|++.+.+.....
T Consensus 525 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 574 (581)
T PRK06134 525 GQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASGYE 574 (581)
T ss_pred CCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCCcc
Confidence 468999999997432 1232 257889999999999998765443
No 317
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=64.31 E-value=23 Score=34.42 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 247 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++||||||+-... .|.+.|..+|..|+-.+....
T Consensus 357 ~~gLf~AGqi~Gt---~Gy~eAaa~Gl~Ag~naa~~~ 390 (617)
T TIGR00136 357 IQGLFFAGQINGT---TGYEEAAAQGLMAGINAALKL 390 (617)
T ss_pred CCCeEEccccCCc---chHHHHHHHHHHHHHHHHHHh
Confidence 7899999996654 356778888988887766554
No 318
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=63.71 E-value=8.3 Score=37.12 Aligned_cols=39 Identities=31% Similarity=0.486 Sum_probs=29.5
Q ss_pred CCCCCCCeEEeecccc----CCCCC---chhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~----~~~~~---~v~gA~~SG~~aA~~i~~ 281 (301)
...||+|||.||+-+. ..|++ ++..|+.+|++|++++.+
T Consensus 510 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 510 DGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 3468999999998763 22332 467889999999999865
No 319
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=63.68 E-value=11 Score=37.01 Aligned_cols=39 Identities=28% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.+..++||.+||-+... ..+..|+..|+.||..|.+.+.
T Consensus 463 ~Ts~pgVfA~GDv~~g~--~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 463 QTSVAGVFAGGDCVTGA--DIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred cCCCCCEEEcCCcCCCc--hHHHHHHHHHHHHHHHHHHHHc
Confidence 45678999999987542 4678899999999999988873
No 320
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=63.03 E-value=10 Score=36.79 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCCCCCeEEeecccc----CCCCC---chhHHHHHHHHHHHHHHHHhhhhhh
Q 022185 244 RSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQDYVLLAA 288 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~~---~v~gA~~SG~~aA~~i~~~~~~~~~ 288 (301)
..||+|||.||+-+. ..|++ ++-.|+.+|++|++.+.+.....++
T Consensus 524 g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~~ 575 (584)
T PRK12835 524 DSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAAA 575 (584)
T ss_pred CCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcCC
Confidence 468999999997643 22332 3788899999999999887544433
No 321
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=62.95 E-value=11 Score=36.53 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=30.0
Q ss_pred CCCCCCeEEeeccccCCCCC-------chhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQKYLA-------SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~-------~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++++|||.||+-++.+..+ ++-.|+..|++|++.+.+..
T Consensus 372 ~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 372 TTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 36799999999976532111 57788999999999887653
No 322
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=62.81 E-value=10 Score=35.15 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCCCCeEEeeccccC-----CCC--CchhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQ-----KYL--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~-----~~~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
..||+|||.||+-+.. .|. .++-.|+.+|++|++.+.+.
T Consensus 384 g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 384 AVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 4689999999985421 122 25788899999999998754
No 323
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=61.64 E-value=9.3 Score=36.70 Aligned_cols=38 Identities=26% Similarity=0.572 Sum_probs=28.8
Q ss_pred CCCCCCeEEeecccc------CCC----CCchhHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTK------QKY----LASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~------~~~----~~~v~gA~~SG~~aA~~i~~ 281 (301)
..||+|||.||+-.+ .++ ..++-.|+.+|+.|++.+.+
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 468999999998863 122 13578889999999998754
No 324
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=61.31 E-value=13 Score=38.37 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.++..++||.+||-... +..+..|+..|+.||+.|+...+
T Consensus 803 lqTs~pgVFAaGD~a~G--p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 803 GETSLTNVYMIGDVQRG--PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred cccCCCCEEEEeccccC--chHHHHHHHHHHHHHHHHhhhcC
Confidence 34567899999998743 25788999999999999988665
No 325
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=60.93 E-value=11 Score=35.32 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCCCeEEeeccccC-----CCC--CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQ-----KYL--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~-----~~~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..||+|||.||+-+.. .|+ .++..|+.+|++|++.+.+..
T Consensus 415 g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~ 461 (466)
T PRK08274 415 GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHA 461 (466)
T ss_pred CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHh
Confidence 3589999999986432 132 357888999999999987653
No 326
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=60.56 E-value=12 Score=36.23 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=29.8
Q ss_pred CCCCCCeEEeecccc----CCCCC---chhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~~---~v~gA~~SG~~aA~~i~~~ 282 (301)
..||+|||.||+-+. ..|++ ++-.|+.+|++|++++.+.
T Consensus 521 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 566 (574)
T PRK12842 521 GTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGV 566 (574)
T ss_pred CCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 468999999997542 22332 4788999999999999765
No 327
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=60.20 E-value=14 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.416 Sum_probs=30.4
Q ss_pred CCC-CCCeEEeeccccCCCCC-------chhHHHHHHHHHHHHHHHHh
Q 022185 244 RSP-VEGFYLAGDYTKQKYLA-------SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p-~~~l~~aGd~~~~~~~~-------~v~gA~~SG~~aA~~i~~~~ 283 (301)
+++ ++|||.||+-++.+..+ ++-.|+..|++|++.+.+..
T Consensus 356 ~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 356 RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 465 99999999976533211 57889999999999987654
No 328
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=60.10 E-value=12 Score=36.60 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++++|||.||+-++.+ +. .++-.|+..|++|++.+.+..
T Consensus 399 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 399 DKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred CCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 35799999999976432 21 267888999999999987653
No 329
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=59.65 E-value=12 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ +. .++-.|+.+|++|++.+.+..
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999976432 21 257888999999999987654
No 330
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=59.40 E-value=19 Score=33.12 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC------C---------cEEecCEEEEccC
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN------G---------NVIDGDAYVFATP 98 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~------g---------~~~~ad~VI~a~p 98 (301)
.+++.-|.+..++.|++|.-+..+.++.++++|.|++|-|.| | -++.|+.-|++-.
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEG 253 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEG 253 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecc
Confidence 467777888888899999999999999999999999997753 2 1467777777654
No 331
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=59.31 E-value=16 Score=32.71 Aligned_cols=43 Identities=33% Similarity=0.440 Sum_probs=29.0
Q ss_pred cCcEEEecceeeEEEecCCC--cEEEEEEe----CCcEEecCEEEEccC
Q 022185 56 LGGEVRLNSRVQKIELNDDG--TVKNFLLT----NGNVIDGDAYVFATP 98 (301)
Q Consensus 56 ~g~~I~l~~~V~~I~~~~~g--~v~~V~~~----~g~~~~ad~VI~a~p 98 (301)
.+.+++++++|++|+..+++ ....|++. +++++.|+.||+++.
T Consensus 108 ~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 108 LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp GTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred CCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 45559999999999986443 22346663 346799999999886
No 332
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=59.27 E-value=16 Score=34.03 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|...|+.+|+.|..
T Consensus 291 ~~T~~p~IyAiGD~~~~~--~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKV--ELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CcCCCCCEEEEEecCCCc--ccHHHHHHHHHHHHHHHhc
Confidence 455679999999988642 4678899999999999874
No 333
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=59.00 E-value=12 Score=36.20 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=29.3
Q ss_pred CCCCCCCeEEeecccc----CCCCC---chhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~----~~~~~---~v~gA~~SG~~aA~~i~~ 281 (301)
...||+|||.||+-+. ..|++ ++-.|+.+|++|++++.+
T Consensus 518 dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 518 DGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3468999999997643 22432 578899999999998753
No 334
>PRK06116 glutathione reductase; Validated
Probab=58.80 E-value=16 Score=33.93 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=29.8
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+.. . ...+-|+..|+.+|+.|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~-~-~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGR-V-ELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCC-c-CcHHHHHHHHHHHHHHHhC
Confidence 35667999999998753 2 4678999999999999964
No 335
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.44 E-value=21 Score=32.26 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=47.2
Q ss_pred CceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEcc
Q 022185 31 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT 97 (301)
Q Consensus 31 ~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~ 97 (301)
...+.||+-|. .-|.+.+++.-.-.|+.+.+|+++.+|+.. +. |.+|.. ++.+..|..||+..
T Consensus 218 ~~pyLyp~YGl-~El~QGFaRssav~GgtymLn~~i~ein~t-k~-v~~v~~-~~~~~ka~KiI~~~ 280 (434)
T COG5044 218 KSPYLYPRYGL-GELSQGFARSSAVYGGTYMLNQAIDEINET-KD-VETVDK-GSLTQKAGKIISSP 280 (434)
T ss_pred CCcceeeccCc-hhhhHHHHHhhhccCceeecCcchhhhccc-cc-eeeeec-CcceeecCcccCCc
Confidence 34578898774 889999998765589999999999999984 32 433433 44678888888653
No 336
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.38 E-value=15 Score=35.50 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++++|||.||+-++.+ + . .++-.|+.+|++|++.+.+..
T Consensus 367 ~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 367 DGLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred CCccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 35799999999976532 2 1 257888999999999987653
No 337
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.14 E-value=16 Score=35.52 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.4
Q ss_pred CCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ + . .++-.|+..|++|++.+.+..
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999976522 1 1 246788999999999887653
No 338
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=57.28 E-value=14 Score=38.25 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=33.4
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 287 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~~ 287 (301)
+..++||.|||-+.. .++..|+..|..||..|...++...
T Consensus 436 t~v~gVyaaGD~~g~---~~~~~A~~eG~~Aa~~i~~~lg~~~ 475 (985)
T TIGR01372 436 DAVQGCILAGAANGL---FGLAAALADGAAAGAAAARAAGFEG 475 (985)
T ss_pred CCCCCeEEeeccCCc---cCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 447899999997754 4788899999999999999887644
No 339
>PLN02661 Putative thiazole synthesis
Probab=57.17 E-value=13 Score=33.43 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCeEEeeccccCCC----C-CchhHHHHHHHHHHHHHHHHhhh
Q 022185 246 PVEGFYLAGDYTKQKY----L-ASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~----~-~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
-.||||.||-.+..-+ + ..+-|-+.||+++|+.|+++++.
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 3689999997654322 1 35778889999999999999973
No 340
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=56.80 E-value=31 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+.. +.....|...|..+|+.|..
T Consensus 306 l~ts~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 306 CQTKERHIYAIGDVIGE--PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred cccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 34557899999998753 24678899999999998853
No 341
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=56.66 E-value=18 Score=35.03 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=29.3
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
++++|||.||+-++.+ +. .++-.|+.+|++|++.+.+..
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999976422 11 256788999999999887653
No 342
>PRK09077 L-aspartate oxidase; Provisional
Probab=56.46 E-value=16 Score=35.03 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+++++|||.||+-++.+ +. .++-.|+..|++|++.+.+..
T Consensus 362 ~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 362 GRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred CccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999976432 21 257788889999999987653
No 343
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=56.37 E-value=69 Score=26.86 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.3
Q ss_pred eEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe------CC-----cEEecCEEEEccCh
Q 022185 33 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT------NG-----NVIDGDAYVFATPV 99 (301)
Q Consensus 33 ~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~------~g-----~~~~ad~VI~a~p~ 99 (301)
+..|+.... .....-+.+.+ +.|.+|.....|..+...++++|.+|.+. .| -+++|+.||-++..
T Consensus 88 ~g~~v~d~~-~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 88 DGYYVADSV-EFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp SEEEES-HH-HHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred CeEEEEcHH-HHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 446665552 43344444555 58999999999999998655788888874 12 37899999999854
No 344
>PRK07121 hypothetical protein; Validated
Probab=56.21 E-value=12 Score=35.22 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=29.4
Q ss_pred CCCCCCeEEeeccccC----CCC--CchhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQ----KYL--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~----~~~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
..||+|||.||+-+.. .|. .++-.|+.+|+.|++.+.+.
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 4689999999976431 121 36888999999999988754
No 345
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=56.06 E-value=16 Score=34.56 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
.+++++|||.||+.++.+ + . .++-.|+.+|++|++.+.+.
T Consensus 342 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 342 GRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred CcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999986422 1 1 25777899999999998765
No 346
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=56.02 E-value=18 Score=33.60 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|...|+.+|+.|..
T Consensus 289 ~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRI--NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCCc--cchhHHHHHHHHHHHHHhc
Confidence 456689999999998642 4678899999999999874
No 347
>PRK12839 hypothetical protein; Provisional
Probab=55.77 E-value=14 Score=35.79 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=31.1
Q ss_pred CCCCCCeEEeecccc----CCCC---CchhHHHHHHHHHHHHHHHHhh
Q 022185 244 RSPVEGFYLAGDYTK----QKYL---ASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~---~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
..||+|||.||+-+. ..|+ .++-.|+.+|++|++++.+.-+
T Consensus 522 g~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 522 DTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 468999999998532 2242 2688899999999999987644
No 348
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.35 E-value=14 Score=35.68 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=29.2
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
+|++|||.||+-++.+ +. .++-.|+.+|++|++.+.+..
T Consensus 369 ~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 369 EWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred CEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999976532 21 247788899999999987653
No 349
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=54.81 E-value=40 Score=31.65 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+... ....-|...|..+|+.|..
T Consensus 310 ~~Ts~~~VyA~GD~~~~~--~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRGP--MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CccCCCCEEEEEeccCCc--chHHHHHHHHHHHHHHHcC
Confidence 346679999999987532 4678889999999999864
No 350
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=54.73 E-value=39 Score=31.88 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=29.6
Q ss_pred cCcE-EEecceeeEEEecCCCcEEEEEEe--------CC-----------cEEecCEEEEccCh
Q 022185 56 LGGE-VRLNSRVQKIELNDDGTVKNFLLT--------NG-----------NVIDGDAYVFATPV 99 (301)
Q Consensus 56 ~g~~-I~l~~~V~~I~~~~~g~v~~V~~~--------~g-----------~~~~ad~VI~a~p~ 99 (301)
.|++ +++++.+++|..+++|++++|++. +| +++++|.||+++..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3543 467888999976444667666531 23 26899999999864
No 351
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=54.71 E-value=15 Score=33.47 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCeEEeeccccCC-CCC--chhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQK-YLA--SMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~-~~~--~v~gA~~SG~~aA~~i~~~~ 283 (301)
..|+|||||+-+.-. |.| .+.-|+.||..|++.+.+..
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 468999999855322 323 58899999999999887653
No 352
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=54.26 E-value=18 Score=35.05 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+++++|||.||+-.+.+ +. .++-.|+..|++|++.+....
T Consensus 366 ~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 366 CETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred cccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999975433 21 267788999999999987653
No 353
>PLN02507 glutathione reductase
Probab=54.14 E-value=20 Score=33.98 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=30.5
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+.|...|+.+|+.|+.
T Consensus 326 ~~Ts~p~IyAiGDv~~~~--~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNRI--NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CcCCCCCEEEeeEcCCCC--ccHHHHHHHHHHHHHHHcC
Confidence 456789999999998642 4678899999999999874
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=53.79 E-value=46 Score=34.37 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=31.8
Q ss_pred HcCcEEEecceeeEEEecC-CCcEEEEEEe-----------------CC--cEEecCEEEEccCh
Q 022185 55 SLGGEVRLNSRVQKIELND-DGTVKNFLLT-----------------NG--NVIDGDAYVFATPV 99 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~~~-~g~v~~V~~~-----------------~g--~~~~ad~VI~a~p~ 99 (301)
+.|+++++++.+++|..++ +++++++++. .| .+++||.||+++.-
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 5799999999999998643 3355544331 12 35899999999863
No 355
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.33 E-value=19 Score=34.53 Aligned_cols=41 Identities=10% Similarity=0.296 Sum_probs=30.2
Q ss_pred CCCCCCCeEEeeccccCCC----C--CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQKY----L--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~----~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+++++|||.||+-+..-+ . .++-.|+.+|++|++.+.+..
T Consensus 357 ~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 357 CETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred CcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 3478999999999653211 1 246678999999999987654
No 356
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.21 E-value=17 Score=35.25 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 022185 245 SPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~ 282 (301)
++++|||.||+-++.+ +. .++-.|+..|++|++.+.+.
T Consensus 381 ~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 381 EPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred CeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4799999999976532 21 25788999999999998764
No 357
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=53.02 E-value=76 Score=26.76 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=42.3
Q ss_pred eeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEe-----------CCcEEecCEEEEccCh
Q 022185 35 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----------NGNVIDGDAYVFATPV 99 (301)
Q Consensus 35 ~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~-----------~g~~~~ad~VI~a~p~ 99 (301)
.|+.... ....+-+.+.+ +.|.+|.....|..+...++.+|.+|.++ |--+++|++||.++..
T Consensus 103 ~~v~ds~-e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 103 YYVADSA-EFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred eEEecHH-HHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 4554452 33333344455 57999999999999998544368888763 2235788999988865
No 358
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=52.55 E-value=23 Score=33.45 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ..++-|+..|..+|+.|+.
T Consensus 314 l~Ts~~~IyA~GDv~~~~--~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 314 SRTNVPNIYAIGDVTDRV--MLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhC
Confidence 456689999999998643 4778899999999999974
No 359
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=52.49 E-value=20 Score=34.49 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
.++..++||.+||-+.... ..+..|+..|..||..|.+.+.
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~-~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKEL-RQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred cccCCCCEEEceeccCCCc-chheeHHhhHHHHHHHHHHHHH
Confidence 3456789999999765322 3567899999999999977653
No 360
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.16 E-value=22 Score=32.50 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=40.2
Q ss_pred cccchHHHHHHHH-------HcCcEEEecceeeEEEecCCCcEEEEEEe---CC--cEEecCEEEEccChh
Q 022185 42 PERLCLPIVEHIQ-------SLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVD 100 (301)
Q Consensus 42 ~~~l~~~l~~~l~-------~~g~~I~l~~~V~~I~~~~~g~v~~V~~~---~g--~~~~ad~VI~a~p~~ 100 (301)
+..++++|...|= +..+.++.+++|+.++..++|++ .+.+. .| ++++.|.||+++...
T Consensus 270 ~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 270 SFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEecccc
Confidence 4555555554332 13468899999999999877764 35543 22 568999999999875
No 361
>PRK08071 L-aspartate oxidase; Provisional
Probab=52.08 E-value=21 Score=34.02 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=29.7
Q ss_pred CCCCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
.+++++|||.||+-++.+ + . .++-.++..|++|++.+...
T Consensus 341 ~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 341 GETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999976422 1 1 25777888999999998654
No 362
>PRK06175 L-aspartate oxidase; Provisional
Probab=51.78 E-value=20 Score=33.27 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+++++|||.||+-++.+ + . .++-.++..|++|++.+....
T Consensus 340 ~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 340 SKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 347899999999976422 1 1 257788999999999986543
No 363
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=50 Score=29.13 Aligned_cols=51 Identities=25% Similarity=0.213 Sum_probs=37.4
Q ss_pred hHHHHHHHHHc-CcEEEecceeeEEEecCCCcEEEEEEeC--C--cEEecCEEEEccCh
Q 022185 46 CLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPV 99 (301)
Q Consensus 46 ~~~l~~~l~~~-g~~I~l~~~V~~I~~~~~g~v~~V~~~~--g--~~~~ad~VI~a~p~ 99 (301)
-+.+.+.++++ +++++++++|++|.-+ + +.+|++.+ | +++.+|-|.+.+..
T Consensus 181 ~~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 181 EEILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred CHHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCC
Confidence 56777778776 8999999999999963 3 55677765 3 24677887777654
No 364
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=51.72 E-value=22 Score=33.23 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.8
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
++.++|||.+||.+... ...+-|..-|+.||+.|+.
T Consensus 299 ~Tnvp~IyA~GDV~~~~--~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 299 TTNVPGIYAIGDVIGGP--MLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ccCCCCEEEeeccCCCc--ccHhHHHHHHHHHHHHHhC
Confidence 45579999999998764 3789999999999999997
No 365
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=51.58 E-value=51 Score=34.22 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHHHHHcCcEEEecceeeEEEecCCCcEE----------------EEEEeCCcEEecCEEEEccChh
Q 022185 48 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVK----------------NFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 48 ~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~----------------~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
.+.+.+ +.|++++.++.+++|.. +|++. .+.+.+++++++|.||.++...
T Consensus 713 Ele~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 713 EYEEAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 333344 46899999999998863 33332 1122233578999999998764
No 366
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=51.32 E-value=21 Score=34.53 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=28.7
Q ss_pred CCCCCCeEEeecccc----CCCC--C-chhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTK----QKYL--A-SMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~--~-~v~gA~~SG~~aA~~i~~~ 282 (301)
..||+|||.||.-+. ..|+ | .+..|+.+|++|++++.+.
T Consensus 526 g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 526 GQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 468999999996543 2233 2 3667899999999998765
No 367
>PRK07512 L-aspartate oxidase; Provisional
Probab=51.25 E-value=22 Score=33.87 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCCCeEEeeccccCCC-C------CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQKY-L------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~-~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..++++|||.||+-++.+. . .++-.++..|++|++.+.+..
T Consensus 350 ~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~ 397 (513)
T PRK07512 350 GRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTP 397 (513)
T ss_pred CccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999764332 1 146667889999999987653
No 368
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=50.99 E-value=22 Score=34.49 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..++++|||.||+-++.+ +. .++-.|+.+|++|++.+.+..
T Consensus 367 ~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 367 CETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999975422 11 257778899999999987654
No 369
>PRK14727 putative mercuric reductase; Provisional
Probab=50.82 E-value=20 Score=33.68 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+.. +..++-|+..|+.+|..|..
T Consensus 309 ~~Ts~~~IyA~GD~~~~--~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 309 METSAPDIYAAGDCSDL--PQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred eecCCCCEEEeeecCCc--chhhhHHHHHHHHHHHHHcC
Confidence 35667999999998753 24678899999999999874
No 370
>PRK13748 putative mercuric reductase; Provisional
Probab=50.50 E-value=21 Score=34.28 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=30.0
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+|||.+||-+... ..+..|+..|+.+|..|..
T Consensus 391 ~~Ts~~~IyA~GD~~~~~--~~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAAINMTG 427 (561)
T ss_pred cccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 456689999999998642 5678899999999999863
No 371
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=50.33 E-value=14 Score=35.06 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=28.9
Q ss_pred CCCCCCeEEeecccc----CCCCC---chhHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTK----QKYLA---SMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~----~~~~~---~v~gA~~SG~~aA~~i~~ 281 (301)
..||+|||.||+-+. ..|++ ++..|+.+|++|++++..
T Consensus 466 g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 466 GRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 468999999998642 23432 378999999999998743
No 372
>PRK06370 mercuric reductase; Validated
Probab=49.08 E-value=28 Score=32.51 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
.++..++||.+||-+... .....|...|+.+|+.|+..
T Consensus 297 l~t~~~~IyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGRG--AFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CcCCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHhCC
Confidence 456689999999987642 46788999999999999753
No 373
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=48.66 E-value=21 Score=33.85 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=29.4
Q ss_pred CCCCCCeEEeeccccCC----CC--CchhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQK----YL--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~----~~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
.+||+|||.||+-+..- +. .++-.|+.+|++|++.+.+.
T Consensus 458 g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 458 GSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred CCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 46899999999964321 21 25778899999999998764
No 374
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=48.63 E-value=25 Score=32.75 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+... ....-|+..|+.+|..|..
T Consensus 294 ~~ts~~~IyA~GD~~~~~--~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 294 TQTSVPGIYAAGDVNGKP--PLLHEAADEGRIAAENAAG 330 (460)
T ss_pred cccCCCCEEEEEecCCCc--cchhHHHHHHHHHHHHhcC
Confidence 455679999999998642 4678899999999999975
No 375
>PRK14694 putative mercuric reductase; Provisional
Probab=47.99 E-value=26 Score=32.80 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=30.0
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ..+.-|...|+.||..|..
T Consensus 298 ~~Ts~~~IyA~GD~~~~~--~~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQP--QFVYVAAAGGSRAAINMTG 334 (468)
T ss_pred cccCCCCEEEEeecCCCc--ccHHHHHHHHHHHHHHhcC
Confidence 456679999999998642 5788899999999999864
No 376
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=47.89 E-value=26 Score=32.62 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+.. +.....|+..|..+|+.|+.
T Consensus 298 ~~t~~~~IyAiGD~~~~--~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGF--PSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred cccCCCCEEEeeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 34567999999997753 24678899999999999973
No 377
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=47.89 E-value=55 Score=30.48 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCccccccCceEEEEEEeecCCcceecCCCCCCCCCCCC-CCCCCeEEeeccccCCCCCchhHHHHHHH
Q 022185 195 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR-SPVEGFYLAGDYTKQKYLASMEGAVLSGK 273 (301)
Q Consensus 195 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~p~~~l~~aGd~~~~~~~~~v~gA~~SG~ 273 (301)
.+...+-+..|++. .++++++.+.- +..|-..|.. ..+.++ ..++||||||.-+... |+.|.| .+|.
T Consensus 285 ~~Q~~~~r~ipgle-----~a~~~r~g~~~--~~~~i~~p~~--L~~~l~~k~~~~lf~AGQi~G~~--GY~Eaa-a~Gl 352 (433)
T TIGR00137 285 GEQKRVFRLIPGLE-----NAEFVRMGVMH--RNTFINSPQL--LTASLHFKDRQTLFFAGQLTGVE--GYVAST-AGGW 352 (433)
T ss_pred HHHHHHHhcCcCcc-----ceEEeecceEE--eeeeeCCHHH--hhHHhccCCCCCEEECcccccch--HHHHHH-HHHH
Confidence 35666777889975 33444433210 0112212221 122222 2368999999988664 555554 4677
Q ss_pred HHHHHHHHHh
Q 022185 274 LCAQAIVQDY 283 (301)
Q Consensus 274 ~aA~~i~~~~ 283 (301)
.|+-.+...+
T Consensus 353 ~agina~~~~ 362 (433)
T TIGR00137 353 LAGINAARLA 362 (433)
T ss_pred HHHHHHHHHH
Confidence 7666655543
No 378
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.83 E-value=29 Score=32.44 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+.. +.....|...|+.||+.|..
T Consensus 299 ~~Ts~p~IyAiGD~~~~--~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 299 MRTNVPHIYAIGDVTAK--LQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred cccCCCCEEEEeecCCC--cccHhHHHHHHHHHHHHHcC
Confidence 45667999999998854 24788899999999999974
No 379
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.60 E-value=61 Score=30.34 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=38.8
Q ss_pred cchHHHHHHHHHcC--cEEEecceeeEEEecCCCcEEEEEEeCC----cEEecCEEEEccChh
Q 022185 44 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVD 100 (301)
Q Consensus 44 ~l~~~l~~~l~~~g--~~I~l~~~V~~I~~~~~g~v~~V~~~~g----~~~~ad~VI~a~p~~ 100 (301)
.+.+-|....+.-+ ..|+++++|.++....+|++. |.+.++ ++.-+|.||+++.-.
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~-V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR-VTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccCCcee-EEEecCCcceeEEEeeEEEEcccCc
Confidence 45555555554434 489999999999985436663 766543 367899999988765
No 380
>PRK08275 putative oxidoreductase; Provisional
Probab=46.00 E-value=26 Score=33.72 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 242 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 242 ~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..+|.+++||.||+-.+.++ .++..|+..|+.|++.+.+..
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~-~~~~~~~~~G~~a~~~~~~~~ 404 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPH-NYMLGAFTYGWFAGENAAEYV 404 (554)
T ss_pred CCccCCCCEEECcccCCchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999765432 367788889999998876543
No 381
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.19 E-value=31 Score=33.49 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCCCCCCeEEeeccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~------~~v~gA~~SG~~aA~~i~~~ 282 (301)
..++++|||.||+-++.-+. .++-.|+..|++|++.+.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~ 409 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEY 409 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 46789999999996532121 25677888999999888754
No 382
>PLN02546 glutathione reductase
Probab=44.72 E-value=31 Score=33.27 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|+..|..+|+.|+.
T Consensus 376 l~Ts~p~IYAaGDv~~~~--~l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 376 SRTSVPSIWAVGDVTDRI--NLTPVALMEGGALAKTLFG 412 (558)
T ss_pred ceeCCCCEEEeeccCCCc--ccHHHHHHHHHHHHHHHcC
Confidence 456689999999998642 4678899999999999874
No 383
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.42 E-value=30 Score=32.48 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+.. +...+.|...|+.+|+.|..
T Consensus 300 ~~t~~p~VyAiGDv~~~--~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQ--PMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred cccCCCCEEEehhhcCC--cccHHHHHHHHHHHHHHHcC
Confidence 35667999999998753 24678899999999999874
No 384
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=44.39 E-value=34 Score=32.88 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=33.2
Q ss_pred HHHHcCcEEEecceeeEEEecCCCcEEEEEEe--CC---c-EEecCEEEEccCh
Q 022185 52 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG---N-VIDGDAYVFATPV 99 (301)
Q Consensus 52 ~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~--~g---~-~~~ad~VI~a~p~ 99 (301)
.++..+.+|++++.|++|... ++++++|++. ++ + .+.++.||++...
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~-~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGa 264 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLE-GDRAVGVEVEIGDGGTIETAVAAREVVLAAGA 264 (542)
T ss_pred HhcCCceEEecCCEEEEEEEE-CCeeEEEEEEeCCCCceEEEecCceEEEeccc
Confidence 344466999999999999994 6666667654 22 2 2467888887654
No 385
>PLN02815 L-aspartate oxidase
Probab=43.82 E-value=38 Score=32.93 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 022185 242 LQRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 242 ~~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~ 282 (301)
..+++++|||.||+-++.+ +. .++-.++..|++|++.+.+.
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~ 432 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 432 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999976432 21 25778888999999998754
No 386
>PRK06444 prephenate dehydrogenase; Provisional
Probab=43.27 E-value=33 Score=28.11 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhHhhcCCc
Q 022185 39 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 108 (301)
Q Consensus 39 GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l~~~ 108 (301)
|| ++++=.-|++.+++.|..|. . -.||.||+++|+..+.+++++
T Consensus 7 G~-~G~mG~~~~~~~~~~g~~v~--------------------~-----~~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 7 GK-NGRLGRVLCSILDDNGLGVY--------------------I-----KKADHAFLSVPIDAALNYIES 50 (197)
T ss_pred ec-CCcHHHHHHHHHHhCCCEEE--------------------E-----CCCCEEEEeCCHHHHHHHHHH
Confidence 55 25666667777777775542 1 268999999999887766543
No 387
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.08 E-value=29 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=34.2
Q ss_pred cCcEEEecceeeEEEecCCCcEEE--EEEeCCcEEecCEEEEccCh-----hhHhhcCC
Q 022185 56 LGGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPV-----DILKLQLP 107 (301)
Q Consensus 56 ~g~~I~l~~~V~~I~~~~~g~v~~--V~~~~g~~~~ad~VI~a~p~-----~~l~~l~~ 107 (301)
+-..++++++|++|...+.+.+.. +++.++++++|+.+|+.+.. ++.+.+.+
T Consensus 110 ~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~ 168 (436)
T COG3486 110 QLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIG 168 (436)
T ss_pred hCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCc
Confidence 347999999999774422222222 56667789999999997642 34455544
No 388
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=42.57 E-value=36 Score=31.74 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=29.9
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+.. +.....|...|+.+|+.|..
T Consensus 297 ~~t~~~~VyAiGD~~~~--~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGG--PMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CccCCCCEEEeeecCCC--cchHHHHHHHHHHHHHHHcC
Confidence 34667999999998753 24678899999999999974
No 389
>PRK08401 L-aspartate oxidase; Provisional
Probab=42.52 E-value=35 Score=31.97 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~ 282 (301)
.+++++|||.||+-++.+ +. .++-.++..|++|++.+.+.
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~~ 365 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISRE 365 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhh
Confidence 357899999999986422 21 13556788999999998764
No 390
>PRK07846 mycothione reductase; Reviewed
Probab=42.43 E-value=39 Score=31.57 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+.|...|+.+|+.|..
T Consensus 288 ~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHcC
Confidence 456689999999988653 3567788899999998864
No 391
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.12 E-value=39 Score=30.45 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=49.1
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecC-CCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~-~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..+..+|.+++++..++|..-+++++++..+ ++....|++.+|-..+++.||+++.+.-
T Consensus 266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 5789999999999999999999999999842 2324469999998999999999988743
No 392
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.09 E-value=38 Score=31.59 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ....-|...|+.+|..|+.
T Consensus 292 ~~Ts~~~VyAiGD~~~~~--~~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGGL--QLEYVAAKEGVVAAENALG 328 (463)
T ss_pred ccCCCCCEEEeeecCCCc--ccHhHHHHHHHHHHHHhcC
Confidence 456679999999988652 3578899999999999974
No 393
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.06 E-value=92 Score=30.72 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCCcE--EEEEEe---------------CCc--EEecCEEEEccCh
Q 022185 49 IVEHIQSLGGEVRLNSRVQKIELNDDGTV--KNFLLT---------------NGN--VIDGDAYVFATPV 99 (301)
Q Consensus 49 l~~~l~~~g~~I~l~~~V~~I~~~~~g~v--~~V~~~---------------~g~--~~~ad~VI~a~p~ 99 (301)
+.+.+ +.|++|++++.+++|..+ ++.+ ..+++. +|+ ++++|.||+++..
T Consensus 368 i~~a~-~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 368 IEEAL-AEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HHHHH-HcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 33333 579999999999999864 3433 212221 122 5899999999875
No 394
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=41.79 E-value=21 Score=32.95 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=23.6
Q ss_pred CCCCCeEEeeccccCCCC-C--chhHHHHHHHHHHH
Q 022185 245 SPVEGFYLAGDYTKQKYL-A--SMEGAVLSGKLCAQ 277 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~-~--~v~gA~~SG~~aA~ 277 (301)
..++||||||+-..-.-+ | .++.|+.||..|++
T Consensus 373 k~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 373 KLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp SSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 347999999987533211 2 48999999999986
No 395
>PLN02852 ferredoxin-NADP+ reductase
Probab=41.76 E-value=30 Score=32.81 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 022185 245 SPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 245 ~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
++++|+|.+||-... -.+-|-.++..|..+|+.|++.+..
T Consensus 384 T~ipGvyAaGDi~~G-p~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 384 DTEPGLYVVGWLKRG-PTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred cCCCCEEEeeeEecC-CCCeeeecHhhHHHHHHHHHHHHHc
Confidence 668999999998763 2257888899999999999998754
No 396
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=41.52 E-value=38 Score=31.62 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=29.3
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|...|+.+|+.|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 291 GRTSARGVWALGDVSSPY--QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred cccCCCCEEEeecccCcc--cChhHHHHHHHHHHHHhcC
Confidence 456679999999988652 3567788899999999874
No 397
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=41.16 E-value=35 Score=33.43 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCCCCCeEEeeccccCCCC------CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++++|||.||+-++.-+. .++-.|+..|++|++.+.+..
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 4679999999996532111 257888899999999877653
No 398
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.45 E-value=38 Score=31.71 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|...|+.+|+.|+.
T Consensus 301 ~~Ts~~~IyA~GD~~~~~--~la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSGP--MLAHKAEDEAVACIERIAG 337 (466)
T ss_pred eecCCCCEEEeeecCCCc--ccHHHHHHHHHHHHHHHcC
Confidence 456789999999988642 4678899999999999974
No 399
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=39.78 E-value=50 Score=31.19 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... +...+-|+..|+.+|+.|+.
T Consensus 306 ~~Ts~p~IyA~GDv~~~~-~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDK-QELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cccCCCCEEEEEEecCCC-ccchHHHHHHHHHHHHHHhc
Confidence 446679999999987532 23567889999999999975
No 400
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=39.76 E-value=1e+02 Score=21.93 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=24.3
Q ss_pred HHHHHHHcCcEEEecceeeEEEecCCC--cEEEEEEeCCcEEec
Q 022185 49 IVEHIQSLGGEVRLNSRVQKIELNDDG--TVKNFLLTNGNVIDG 90 (301)
Q Consensus 49 l~~~l~~~g~~I~l~~~V~~I~~~~~g--~v~~V~~~~g~~~~a 90 (301)
+++.|+++|+-+. |.++... +| -|+.|+..||..+.+
T Consensus 2 mVklie~~G~~F~----V~dm~~~-dg~~~V~~ie~~dGti~~~ 40 (102)
T PF03197_consen 2 MVKLIEENGGWFE----VKDMSSI-DGDYFVEKIEMADGTIYNS 40 (102)
T ss_pred HhHHHHHcCCcEE----EeeeEec-ccceeEEEEEecCCcEEcC
Confidence 4677788898774 6667664 33 366677888865543
No 401
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=39.35 E-value=72 Score=19.44 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=26.5
Q ss_pred eEEEecCCCcEEEEEEeCCcEEecCEEEEccChhhH
Q 022185 67 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 67 ~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~l 102 (301)
..|...-+|++..+....|+.++...+++.+....+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 445544467777788888988999989888776554
No 402
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=39.31 E-value=38 Score=31.88 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=33.6
Q ss_pred cCcEEEecceeeEEEecCCC----cEEEEEEeCCcEEecCEEEEccChhhHhhc
Q 022185 56 LGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDILKLQ 105 (301)
Q Consensus 56 ~g~~I~l~~~V~~I~~~~~g----~v~~V~~~~g~~~~ad~VI~a~p~~~l~~l 105 (301)
.+.+|+-+. |.+|...+++ ++.+|.+.||..+.|+.||+|+..-.-.++
T Consensus 138 ~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~I 190 (679)
T KOG2311|consen 138 PNLEIREGA-VADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRGQI 190 (679)
T ss_pred Ccchhhhhh-hhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceeeEE
Confidence 345666555 5555553333 377899999999999999999876443333
No 403
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=39.19 E-value=53 Score=32.04 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=29.8
Q ss_pred CCCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 242 LQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 242 ~~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..+|.++|||.|||-.+.+......++...|+.++..+.+..
T Consensus 390 ~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 390 NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 346779999999998754322345677778888888876654
No 404
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=39.17 E-value=44 Score=31.09 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=29.7
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
++..+++|.+||-... +.....|+..|+.+|+.|...
T Consensus 296 ~t~~~~IyaiGD~~~~--~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGG--PMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred ccCCCCEEEeeecCCC--cccHHHHHHHHHHHHHHHcCC
Confidence 4567999999998753 246788999999999998753
No 405
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=39.13 E-value=52 Score=29.30 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeEEEecCCCc---EEEEEEeCCcEEecCEEEEccChh
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGT---VKNFLLTNGNVIDGDAYVFATPVD 100 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~---v~~V~~~~g~~~~ad~VI~a~p~~ 100 (301)
..++..+.+.++..|++|.+|-+|+.|.++.++. -+.|.-..|++++...||-++.+.
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEecccc
Confidence 4678889999999999999999999999975541 111322235778888888776653
No 406
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=38.87 E-value=53 Score=26.10 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHcCcEEEecceeeE---EEecCCCcEEEEEEeCCcEEecCEEEEc
Q 022185 43 ERLCLPIVEHIQSLGGEVRLNSRVQK---IELNDDGTVKNFLLTNGNVIDGDAYVFA 96 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g~~I~l~~~V~~---I~~~~~g~v~~V~~~~g~~~~ad~VI~a 96 (301)
+.=+++|.+.|+++|.+-.++..-.. |---+..+- ....+| .+.||.|++.
T Consensus 43 ~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~--~v~~~G-Iy~ADVVLVP 96 (178)
T PF02006_consen 43 EERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERA--KVSKEG-IYSADVVLVP 96 (178)
T ss_pred HHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccc--eECccc-ceeccEEEec
Confidence 44578889999999998777763222 322222222 233466 7999999875
No 407
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.57 E-value=74 Score=29.85 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=37.1
Q ss_pred ecCCCcccchHHHHHHHHHcCc---EEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEcc
Q 022185 37 LDGNPPERLCLPIVEHIQSLGG---EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT 97 (301)
Q Consensus 37 ~~GG~~~~l~~~l~~~l~~~g~---~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~ 97 (301)
|++=|++-+-+.|...+ +.+- -.....+++.+...+|+....+.+.+|.+..||.+|+++
T Consensus 98 pR~lfG~Yl~e~l~~l~-~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 98 PRRLFGEYLREQLAALL-ARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred chhHHHHHHHHHHHHHH-HhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 46665444555555544 3343 334556667777654554444667788888999988876
No 408
>PRK13761 hypothetical protein; Provisional
Probab=36.48 E-value=55 Score=27.38 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=29.0
Q ss_pred chHHHHHHHHHcCcEEEecce-eeEEEecCCCcEEEEEEeCCcEEecCEEEEc
Q 022185 45 LCLPIVEHIQSLGGEVRLNSR-VQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 96 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~-V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a 96 (301)
=+++|.+.|+++|.+..++.. -..|---+..+- ....+| .+.||.|++.
T Consensus 108 R~~~I~~~l~~~Ga~~vlG~~~~~~ip~L~~~R~--~v~~~G-Iy~ADVVLVP 157 (248)
T PRK13761 108 RVEKIAEVLREHGAKEVLGTDEDARIPGLDHERA--KVSEDG-IYSADVVLVP 157 (248)
T ss_pred HHHHHHHHHHHcCCceeeCCCCcCcCCCCCCccc--eECccc-ceeccEEEec
Confidence 356777788888887766654 222322222222 233456 7899999875
No 409
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=36.28 E-value=3.6 Score=33.81 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=44.6
Q ss_pred cCCCCccccHHHHHHHHHHH---hh----ccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCcEE
Q 022185 6 NFINPDELSMQCILIALNRF---LQ----EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVK 78 (301)
Q Consensus 6 ~~~~~e~~sa~~~~~~~~~~---~~----~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~ 78 (301)
|..+|+++++..+ +|. .. -....-.++|.+|+ ..+++.|.. ..+++|+|++...++..
T Consensus 11 Wg~~p~eL~~~v~----~RvPvr~~~d~~YF~d~yQgiP~~GY-T~~fe~mL~---h~~I~v~l~td~~~~~~------- 75 (204)
T PF03275_consen 11 WGVDPEELDASVI----KRVPVRFSYDDRYFNDKYQGIPKDGY-TKMFENMLD---HPNIEVRLNTDFFDIIE------- 75 (204)
T ss_dssp HTSSGGGSBCCCC----SCS-BBSSS--BS--SSEEEEETTHH-HHHHHHHC----STTEEEECS--GGGCHH-------
T ss_pred cCCChHHCCHHHh----cCCceeeCCCCccccChhhhCchhCH-HHHHHHHhC---CCceEEEcCCCHHHhhc-------
Confidence 4567777777433 221 00 01222348899998 778777764 35889999986654443
Q ss_pred EEEEeCCcEEecCEEEEccChhhHh
Q 022185 79 NFLLTNGNVIDGDAYVFATPVDILK 103 (301)
Q Consensus 79 ~V~~~~g~~~~ad~VI~a~p~~~l~ 103 (301)
.++ ...++.||.|.|+..+-
T Consensus 76 ----~~~-~~~~~~viyTG~iDe~F 95 (204)
T PF03275_consen 76 ----FGG-EPYADKVIYTGPIDEYF 95 (204)
T ss_dssp ----HHC-CCTEEEEEE-S-HHHHT
T ss_pred ----ccc-cccCCeEEEeCCHHHHh
Confidence 012 24679999999987653
No 410
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.13 E-value=43 Score=34.42 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+|.++|||.|||-.+..+ .++-+|+..|.+|++.+.+..
T Consensus 370 ~~T~v~GLfAaGE~a~~~~-nsl~~a~v~G~~Ag~~a~~~~ 409 (897)
T PRK13800 370 ARTTVPGLYAAGDLACVPH-NYMIGAFVFGDLAGAHAAGTL 409 (897)
T ss_pred CcccCCCeEechhccCcch-hhhhhHHHhHHHHHHHHHHHH
Confidence 4567999999999765433 477788889999999887643
No 411
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=35.88 E-value=51 Score=32.17 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCCCCCeEEeeccccCCCC------CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYL------ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~------~~v~gA~~SG~~aA~~i~~~ 282 (301)
.++.++|||.||+-.+.-+. .++-.++..|++|++.+.+.
T Consensus 379 ~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 379 QMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999996432121 25678888999999987764
No 412
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=35.57 E-value=42 Score=32.16 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEE-ecCEEEEccChhhHhhcCCc
Q 022185 44 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVI-DGDAYVFATPVDILKLQLPE 108 (301)
Q Consensus 44 ~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~-~ad~VI~a~p~~~l~~l~~~ 108 (301)
.+.+.|...|.. ++|.....|.++.. + +|...||.+. .+|.||++|....--..+++
T Consensus 282 ~ind~l~~~i~~--G~i~vk~~I~~~~~--~----~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~ 339 (531)
T PF00743_consen 282 TINDELPNRIRS--GRIKVKPDIKRFTE--N----SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDE 339 (531)
T ss_dssp -------------------EE-EEEE-S--S----EEEETTSEEEEE-SEEEE---EE---TTB-T
T ss_pred cccccccccccc--cccccccccccccc--c----ccccccccccccccccccccccccccccccc
Confidence 356667777743 45666677888763 3 3667899764 69999999998654444443
No 413
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=35.41 E-value=57 Score=32.19 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred CC-CCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RS-PVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~-p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+ +++|||.||+-++.+ +. .++-.|+..|++|++.+.+..
T Consensus 382 ~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 382 ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 44 599999999976532 11 256778889999999887654
No 414
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=34.61 E-value=53 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
++..+++|.+||-+.. +...+-|+..|+.+|..+..
T Consensus 294 ~ts~~~VyA~GD~~~~--~~la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 294 QTNVPHIYACGDVIGG--IQLAHVAFHEGTTAALHASG 329 (458)
T ss_pred ecCCCCEEEEeecCCC--cccHHHHHHHHHHHHHHHcC
Confidence 4567999999998753 24678899999999999863
No 415
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=34.54 E-value=52 Score=30.42 Aligned_cols=49 Identities=27% Similarity=0.284 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccCh
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 99 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~ 99 (301)
.+-|-+.. ..|+-++.+..|.+|... +. . |.++||.++..|.+++++..
T Consensus 261 peDLp~~~-nGGvAvl~G~kvvkid~~-d~-~--V~LnDG~~I~YdkcLIATG~ 309 (659)
T KOG1346|consen 261 PEDLPKAV-NGGVAVLRGRKVVKIDEE-DK-K--VILNDGTTIGYDKCLIATGV 309 (659)
T ss_pred hhHCcccc-cCceEEEeccceEEeecc-cC-e--EEecCCcEeehhheeeecCc
Confidence 33444333 367799999999999984 43 2 78889999999999998765
No 416
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=34.50 E-value=59 Score=30.09 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... ...+-|...|+.+++.|..
T Consensus 280 ~~Ts~~~IyA~GD~~~~~--~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 280 LHTTADNIWAMGDVTGGL--QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred cccCCCCEEEeeecCCCc--cchhHHHHHHHHHHHHHcC
Confidence 456689999999998652 4677788889999998864
No 417
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=34.12 E-value=1.2e+02 Score=31.68 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=31.7
Q ss_pred chHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEE--------------EEeCCc--EEecCEEEEccCh
Q 022185 45 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNF--------------LLTNGN--VIDGDAYVFATPV 99 (301)
Q Consensus 45 l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V--------------~~~~g~--~~~ad~VI~a~p~ 99 (301)
..+.+.+.+ +.|+++++++.+++|. + ++++.. .+.+|+ ++++|.||+++..
T Consensus 708 ~~eEl~~al-eeGVe~~~~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~ 774 (1012)
T TIGR03315 708 SREELEEAL-EDGVDFKELLSPESFE-D--GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774 (1012)
T ss_pred CHHHHHHHH-HcCCEEEeCCceEEEE-C--CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCC
Confidence 334444444 4789999998888887 1 222211 111343 5899999999875
No 418
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=34.00 E-value=83 Score=29.00 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCCCeEEeeccccCC----CCCchhHHHHHHHHHHHHHHHHhhh
Q 022185 246 PVEGFYLAGDYTKQK----YLASMEGAVLSGKLCAQAIVQDYVL 285 (301)
Q Consensus 246 p~~~l~~aGd~~~~~----~~~~v~gA~~SG~~aA~~i~~~~~~ 285 (301)
..++||.+||-.... .|+.-+.|.+.|.-+|+.|.+.+.-
T Consensus 290 ~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 290 GHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 468999999976443 2578899999999999999988743
No 419
>PTZ00052 thioredoxin reductase; Provisional
Probab=33.40 E-value=65 Score=30.56 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
++..++||.+||-+.. .+...+-|+..|+.+|+.|+.
T Consensus 304 ~Ts~p~IyAiGDv~~~-~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEG-RPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred cCCCCCEEEEEEecCC-CcccHHHHHHHHHHHHHHHhC
Confidence 4567899999997742 224678899999999999974
No 420
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=33.38 E-value=56 Score=31.58 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHH-cCcEEEecceeeEEEecCCCcEEEEEE---eCCc--EEecCEEEEccChhh
Q 022185 43 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 101 (301)
Q Consensus 43 ~~l~~~l~~~l~~-~g~~I~l~~~V~~I~~~~~g~v~~V~~---~~g~--~~~ad~VI~a~p~~~ 101 (301)
..+...|.+.+.+ .+.+|..+..|+++..++++.+.+|.. .+|+ .+.++.||+++....
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4578888888877 667899999999999865554555543 3453 467899999997655
No 421
>PRK07804 L-aspartate oxidase; Provisional
Probab=33.35 E-value=54 Score=31.43 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=28.8
Q ss_pred CCCCCCCeEEeeccccCC-C----C--CchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK-Y----L--ASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~----~--~~v~gA~~SG~~aA~~i~~~ 282 (301)
..++++|||.||+-++.+ + . .++..++..|+.+++.+.+.
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~ 412 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAAAH 412 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999986422 1 1 24566778899999988764
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=33.24 E-value=1.3e+02 Score=31.20 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.7
Q ss_pred hHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEE
Q 022185 46 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL 82 (301)
Q Consensus 46 ~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~ 82 (301)
.+.+.+.+ +.|+++..+..-.+|..+++|++++|++
T Consensus 644 ~eEv~~A~-eEGV~f~~~~~P~~i~~d~~g~v~~l~~ 679 (1028)
T PRK06567 644 HEELIYAL-ALGVDFKENMQPLRINVDKYGHVESVEF 679 (1028)
T ss_pred HHHHHHHH-HcCcEEEecCCcEEEEecCCCeEEEEEE
Confidence 45565556 4699999999999998866787776655
No 423
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=33.04 E-value=1.7e+02 Score=28.70 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCccccccCceEEEEEEeecCCcc-eec-CCCCCCCCCCCCC-CCCCeEEeeccccCCCCCchhHHHHH
Q 022185 195 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKT-IPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVLS 271 (301)
Q Consensus 195 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~g~~~~~~~~~~-p~~~l~~aGd~~~~~~~~~v~gA~~S 271 (301)
.+...+-+.+|++. .++ ..|..++. |.+ .|.. ..+.+.+ .++||||||.-.... |+.| |...
T Consensus 316 ~~Q~~~~r~ipGle-----~a~-----i~r~gy~ieyd~i~p~~--L~~~Le~k~~~~lf~AGQinGt~--GYeE-aaaq 380 (618)
T PRK05192 316 DVQLEMLRSIPGLE-----NAE-----ILRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQINGTT--GYEE-AAAQ 380 (618)
T ss_pred HHHHHHHhcCcCcc-----cee-----EeecccceeecccChhh--cchhheecCCCCeEECcccCCCh--HHHH-HHHH
Confidence 35666777889875 223 33333332 332 1222 2233333 368999999877653 4444 4445
Q ss_pred HHHHHHHHH
Q 022185 272 GKLCAQAIV 280 (301)
Q Consensus 272 G~~aA~~i~ 280 (301)
|..|+-...
T Consensus 381 Gl~AgiNaa 389 (618)
T PRK05192 381 GLIAGINAA 389 (618)
T ss_pred HHHHHHHHH
Confidence 555554433
No 424
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=32.63 E-value=35 Score=31.28 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCCCeEEeeccccCC-CCC--chhHHHHHHHHHH
Q 022185 246 PVEGFYLAGDYTKQK-YLA--SMEGAVLSGKLCA 276 (301)
Q Consensus 246 p~~~l~~aGd~~~~~-~~~--~v~gA~~SG~~aA 276 (301)
-.+||||||+-+.-. ..| .++-|+.||..|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 468999999965432 112 5899999999886
No 425
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=31.82 E-value=86 Score=27.61 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=38.6
Q ss_pred ccchHHHHHHHHHcC-cEEEecceeeEEEecCCCcEEEEEEe---C-CcEEecCEEEEccChhhH
Q 022185 43 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT---N-GNVIDGDAYVFATPVDIL 102 (301)
Q Consensus 43 ~~l~~~l~~~l~~~g-~~I~l~~~V~~I~~~~~g~v~~V~~~---~-g~~~~ad~VI~a~p~~~l 102 (301)
..+...|.+.+++.| +++.+++ |.++.. +.+++.+|... + +....++.+|+++.|++-
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~Gk-v~ev~d-Ek~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFGK-VKEVSD-EKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEee-eEEeec-ccccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence 345677788777755 7888876 777874 45555545443 1 345677888888887764
No 426
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=30.98 E-value=65 Score=29.88 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCCCeEEeeccccCCCC----CchhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQKYL----ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~----~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.++|||.+|+-+....+ .+---|+.||..||+.|++..
T Consensus 379 ~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 379 VIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred eccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 47999999998765322 233467889999999998654
No 427
>PTZ00367 squalene epoxidase; Provisional
Probab=30.28 E-value=1.4e+02 Score=28.94 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=28.0
Q ss_pred CCCeEEeeccccCCCC---CchhHHHHHHHHHHHHHHH
Q 022185 247 VEGFYLAGDYTKQKYL---ASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~---~~v~gA~~SG~~aA~~i~~ 281 (301)
.+|+.+.||..+.-+| +|++-|++.+...++.|..
T Consensus 336 ~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~ 373 (567)
T PTZ00367 336 IKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTG 373 (567)
T ss_pred CCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 4689999998776554 5899999999888888753
No 428
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=30.00 E-value=50 Score=30.10 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.4
Q ss_pred CCCeEEeeccccCCCCCchhHHHHHHHHHHHHHH
Q 022185 247 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~ 280 (301)
.+||+|+|-.....|. .|+.|+.+|+.++++++
T Consensus 344 ~~~v~~~GRlg~y~Y~-nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 344 EDNLILLGRLAEYQYY-DMDQAILAALYKAEQLL 376 (377)
T ss_pred CCCEEEeeeeeEeEee-cHHHHHHHHHHHHHHhh
Confidence 4699999998877763 89999999999999875
No 429
>PTZ00058 glutathione reductase; Provisional
Probab=29.31 E-value=86 Score=30.31 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCCCCCCeEEeeccccCC--------------------------------CCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK--------------------------------YLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~--------------------------------~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..++||.+||-+... .+...+-|...|+.+|+.|..
T Consensus 361 lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 361 QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 456789999999998721 124678899999999999975
No 430
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.93 E-value=1.8e+02 Score=26.93 Aligned_cols=89 Identities=20% Similarity=0.204 Sum_probs=59.6
Q ss_pred CCCCccccHHHHHHHHHHHh---hccCCceEeeecCCCcccchHHHHHHHHHcCcEEEecceeeEEEecCCCc-EEEEEE
Q 022185 7 FINPDELSMQCILIALNRFL---QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGT-VKNFLL 82 (301)
Q Consensus 7 ~~~~e~~sa~~~~~~~~~~~---~~~~~~~~~~~~GG~~~~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~-v~~V~~ 82 (301)
+.+..+.++-..+.....|+ .+.+..-|.||-=|- +-|...+.+...-.|+=.-++++|+.|..+++.. ++-+..
T Consensus 248 M~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGq-GELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~ 326 (547)
T KOG4405|consen 248 MLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQ-GELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILD 326 (547)
T ss_pred hcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCC-CcchHHHHHHHHHhcceEEeccchhheeecccccchhhhHh
Confidence 44556677766666666664 455666788887673 7899999988766899999999999999854321 110112
Q ss_pred eCCcEEecCEEEEc
Q 022185 83 TNGNVIDGDAYVFA 96 (301)
Q Consensus 83 ~~g~~~~ad~VI~a 96 (301)
..|+.+.++++|+.
T Consensus 327 s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 327 SFGQRINAKNFVVS 340 (547)
T ss_pred hhcchhcceeeeec
Confidence 24666666666653
No 431
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=28.67 E-value=77 Score=31.03 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
.+|.++|||.|||-.+.+..+..-.++..|..++..+.+.
T Consensus 402 ~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~ 441 (614)
T TIGR02061 402 RMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRW 441 (614)
T ss_pred CccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHH
Confidence 3577999999999765431122233445566665555443
No 432
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=28.65 E-value=72 Score=33.91 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCCCCCeEEeeccccCC----CC--CchhHHHHHHHHHHHHHHHHh
Q 022185 244 RSPVEGFYLAGDYTKQK----YL--ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~----~~--~~v~gA~~SG~~aA~~i~~~~ 283 (301)
..||+|||.||+-+..- |. .++-.|+.+|+.|++.+.+..
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~ 902 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATIL 902 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 35899999999964321 22 246668899999999887753
No 433
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.48 E-value=85 Score=30.90 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=25.3
Q ss_pred CCCCCCCeEEeeccccCCCCC------chhHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLA------SMEGAVLSGKLCAQA 278 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~------~v~gA~~SG~~aA~~ 278 (301)
.+|.++|||.||+-++..+.. ++-.|+..|++|++.
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred CccccCCEEECccccccCCCcccccchhHHHHHHHHHHHhHH
Confidence 457799999999964322221 366788888888766
No 434
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=28.23 E-value=40 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.2
Q ss_pred cCCCcccchHHHHHHHHHcCcEEEecce
Q 022185 38 DGNPPERLCLPIVEHIQSLGGEVRLNSR 65 (301)
Q Consensus 38 ~GG~~~~l~~~l~~~l~~~g~~I~l~~~ 65 (301)
-||| +++++.|...+.+.|.++..-|.
T Consensus 16 YGGf-ET~ve~L~~~l~~~g~~v~Vyc~ 42 (185)
T PF09314_consen 16 YGGF-ETFVEELAPRLVSKGIDVTVYCR 42 (185)
T ss_pred cCcH-HHHHHHHHHHHhcCCceEEEEEc
Confidence 4999 99999999999877877665554
No 435
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=26.41 E-value=74 Score=29.87 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=20.1
Q ss_pred EEEeCCcEEecCEEEEccChhhHhhcC
Q 022185 80 FLLTNGNVIDGDAYVFATPVDILKLQL 106 (301)
Q Consensus 80 V~~~~g~~~~ad~VI~a~p~~~l~~l~ 106 (301)
|++.||+++++|.||+++....--.++
T Consensus 267 V~f~DG~~~~~D~Ii~~TGy~~~~pfL 293 (461)
T PLN02172 267 IVFKNGKVVYADTIVHCTGYKYHFPFL 293 (461)
T ss_pred EEECCCCCccCCEEEECCcCCcccccc
Confidence 667789888999999998875433333
No 436
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=25.39 E-value=1e+02 Score=29.11 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=30.5
Q ss_pred CCCCCCCeEEeeccccCCCC-------CchhHHHHHHHHHHHHHHHHh
Q 022185 243 QRSPVEGFYLAGDYTKQKYL-------ASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~-------~~v~gA~~SG~~aA~~i~~~~ 283 (301)
.+|.+++||.+|+-.+.|.. .+.--++..|.++|+.|..+.
T Consensus 350 GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 350 GRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred CcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 46789999999999887631 133345678889999988764
No 437
>PRK06748 hypothetical protein; Validated
Probab=25.39 E-value=1.7e+02 Score=20.26 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=26.8
Q ss_pred HcCcEEEecceeeEEEe-c---------CCCcEEEEEEeCCcEEecCEEEEcc
Q 022185 55 SLGGEVRLNSRVQKIEL-N---------DDGTVKNFLLTNGNVIDGDAYVFAT 97 (301)
Q Consensus 55 ~~g~~I~l~~~V~~I~~-~---------~~g~v~~V~~~~g~~~~ad~VI~a~ 97 (301)
+-|..|..+.++..|+. + .+|.+..+....|+++....+|..+
T Consensus 21 k~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I 73 (83)
T PRK06748 21 RESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITV 73 (83)
T ss_pred CCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEE
Confidence 34666666666666665 3 3555555566677777777777654
No 438
>PRK07395 L-aspartate oxidase; Provisional
Probab=24.49 E-value=85 Score=30.27 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=27.2
Q ss_pred CCCCCCCeEEeeccccCC-CC------CchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQK-YL------ASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~-~~------~~v~gA~~SG~~aA~~i~~ 281 (301)
.+++++|||.||+-++.+ +. .++-.++..|+++++.+..
T Consensus 356 ~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~lvfG~~a~~~~~~ 401 (553)
T PRK07395 356 NQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELP 401 (553)
T ss_pred CcccCCCEEECccccccCCCcccchHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999976532 11 1355567788998888753
No 439
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.19 E-value=66 Score=29.64 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 246 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
|.++|+++|||.++. .|.+--...++.-|+.++..
T Consensus 81 ~~~~iiLGGDHLGPn--~Wq~lpa~eAM~~A~~li~a 115 (426)
T PRK15458 81 PQEALILGGDHLGPN--RWQNLPAAQAMANADDLIKS 115 (426)
T ss_pred ChhhEEeecCCCCCc--cccCCCHHHHHHHHHHHHHH
Confidence 345799999999985 34444444555555555554
No 440
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=23.99 E-value=35 Score=30.38 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=25.6
Q ss_pred ceeeEEEecCCCcEEEEEEeCCcEEecCEEEEccChhh
Q 022185 64 SRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 101 (301)
Q Consensus 64 ~~V~~I~~~~~g~v~~V~~~~g~~~~ad~VI~a~p~~~ 101 (301)
..|++++.+ ++ .|.+.+|+++..|+.|+|+...+
T Consensus 112 ekv~~f~P~-~N---~v~t~gg~eIsYdylviA~Giql 145 (446)
T KOG3851|consen 112 EKVKEFNPD-KN---TVVTRGGEEISYDYLVIAMGIQL 145 (446)
T ss_pred HHHHhcCCC-cC---eEEccCCcEEeeeeEeeeeecee
Confidence 456666653 33 37788999999999999998765
No 441
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.81 E-value=2.3e+02 Score=27.40 Aligned_cols=72 Identities=15% Similarity=0.342 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCccccccCceEEEEEEeecCCcc-eecCCCCCCCCCCCCC-CCCCeEEeeccccCCCCCchhHHHH---
Q 022185 196 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSV-YKTIPNCEPCRPLQRS-PVEGFYLAGDYTKQKYLASMEGAVL--- 270 (301)
Q Consensus 196 ~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~-p~~~l~~aGd~~~~~~~~~v~gA~~--- 270 (301)
+..++-+-.|++. .+. +.|..|+. |.+... .+..|.+.+ -++||||||.-=.. .|-|-|.-
T Consensus 317 VQ~~~irsipGlE-----na~-----i~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AGQINGT---tGYEEAAaQGl 382 (621)
T COG0445 317 VQEQIIRSIPGLE-----NAE-----ILRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAGQINGT---TGYEEAAAQGL 382 (621)
T ss_pred HHHHHHHhCcccc-----cce-----eeccceeeeecccCh-hhcccchhhceecceEEcccccCC---chhHHHHhhhH
Confidence 5666667788875 222 34444442 432111 123344443 47999999975433 23344433
Q ss_pred -HHHHHHHHHHH
Q 022185 271 -SGKLCAQAIVQ 281 (301)
Q Consensus 271 -SG~~aA~~i~~ 281 (301)
.|.-||.++..
T Consensus 383 iAGiNAal~~~~ 394 (621)
T COG0445 383 IAGINAALKVQG 394 (621)
T ss_pred HHHHHHHHHhcC
Confidence 44445544433
No 442
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=23.39 E-value=68 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHh
Q 022185 246 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 283 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~ 283 (301)
|.++|+++|||.+|. .+-+--...++.-|+.++..+
T Consensus 81 ~~~~iiLGGDHLGP~--~w~~lpaeeAM~~A~~li~ay 116 (424)
T PF08013_consen 81 PRDRIILGGDHLGPN--PWQHLPAEEAMAKAKELIRAY 116 (424)
T ss_dssp -GGGEEEEEEEESSC--CCTTSBHHHHHHHHHHHHHHH
T ss_pred chhhEEecCCCCCcc--cccCCCHHHHHHHHHHHHHHH
Confidence 345799999999995 343434445666666666543
No 443
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=22.89 E-value=1e+02 Score=28.29 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.5
Q ss_pred CCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhh
Q 022185 248 EGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 284 (301)
Q Consensus 248 ~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~ 284 (301)
|+||.+| |+..|-.|-|..+++-+..+|+.|.+++.
T Consensus 372 pglY~sG-W~k~GP~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 372 PGLYASG-WVKHGPTGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred CceEEEe-eeccCCcceeeehhhhHHHHHHHHHHHHH
Confidence 6888888 66665446677888888888888888765
No 444
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=22.87 E-value=2.1e+02 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=38.7
Q ss_pred cchHHHHHHHHH----cCcEEEecceeeEEEecCCCcEEEEEE---e-----CCc----------EEecCEEEEccC
Q 022185 44 RLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLL---T-----NGN----------VIDGDAYVFATP 98 (301)
Q Consensus 44 ~l~~~l~~~l~~----~g~~I~l~~~V~~I~~~~~g~v~~V~~---~-----~g~----------~~~ad~VI~a~p 98 (301)
.+++.+++.+++ .-+++++.++|.++..+ +|+|++|.- + .|+ ++.|..||++..
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t-~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTT-GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEee-CCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 577888887775 34689999999999985 777777742 1 121 467888998764
No 445
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=22.78 E-value=74 Score=29.24 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=21.2
Q ss_pred CCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 246 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
|.++|+++|||.++. .|...-...++..|+.++..
T Consensus 78 ~~~~iiLggDHlGPn--~Wq~~pa~eAM~~A~~li~a 112 (421)
T PRK15052 78 PRERIILGGDHLGPN--CWQQEPADAAMEKSVELVKA 112 (421)
T ss_pred ChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHHH
Confidence 345799999999985 23333334455555554443
No 446
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=22.55 E-value=78 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=20.3
Q ss_pred CCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 246 PVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
|.++|+++|||.++. .|.+--...++.-|+.++.
T Consensus 77 ~~~~iiLggDHlGPn--~Wq~lpa~eAM~~A~~li~ 110 (420)
T TIGR02810 77 PRDRLILGGDHLGPN--PWQHLPADEAMAKAAALVD 110 (420)
T ss_pred ChhcEEeecCCCCCc--cccCCCHHHHHHHHHHHHH
Confidence 345799999999985 2333333344444555444
No 447
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.21 E-value=64 Score=21.89 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCcccchHHHHHHHHHcCcEEEecce
Q 022185 40 NPPERLCLPIVEHIQSLGGEVRLNSR 65 (301)
Q Consensus 40 G~~~~l~~~l~~~l~~~g~~I~l~~~ 65 (301)
|++..|+++.++.++++|.+|...|+
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p~C~ 63 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVPTCS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEETSH
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEECH
Confidence 66678999999999999999988775
No 448
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=21.27 E-value=54 Score=18.64 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=16.7
Q ss_pred EeeccccCCCCCchhHHHHHHHHHHHHHHHH
Q 022185 252 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 282 (301)
Q Consensus 252 ~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~ 282 (301)
++||++.. . .++.|. |...|.+++++
T Consensus 10 L~GD~~dn-i-~Gv~gi---G~ktA~~ll~~ 35 (36)
T smart00279 10 LVGDYSDN-I-PGVKGI---GPKTALKLLRE 35 (36)
T ss_pred HhCcCCCC-C-CCCCcc---cHHHHHHHHHh
Confidence 56877753 2 356664 77777777765
No 449
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=21.09 E-value=1e+02 Score=29.59 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=46.8
Q ss_pred CCceEeeecCCCcc-cchHHHHHHHHHcCcEEEecceeeEEEecCCCcEEEEEEeC---CcE--EecCEEEEccCh
Q 022185 30 HGSKMAFLDGNPPE-RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNV--IDGDAYVFATPV 99 (301)
Q Consensus 30 ~~~~~~~~~GG~~~-~l~~~l~~~l~~~g~~I~l~~~V~~I~~~~~g~v~~V~~~~---g~~--~~ad~VI~a~p~ 99 (301)
.|..++| +|-+++ ++--.++=..-++|..+.-..+|.++..+++|++.++++.| |++ +.|..||.++.+
T Consensus 211 ~Ga~VYy-DGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGp 285 (680)
T KOG0042|consen 211 KGAMVYY-DGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGP 285 (680)
T ss_pred eeEEEEe-cCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCC
Confidence 4555555 565544 33333333333589999999999999998888887777664 554 578888887765
No 450
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=1e+02 Score=27.84 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 022185 244 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 286 (301)
Q Consensus 244 ~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~~~~~~ 286 (301)
.+.++.+|..||-... -|-..+-|++||+..|++|.......
T Consensus 328 ~t~vp~vyAvGDIl~~-kpELTPvAIqsGrlLa~Rlf~gs~q~ 369 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILED-KPELTPVAIQSGRLLARRLFAGSTQL 369 (503)
T ss_pred hcCCCceEEecceecC-CcccchhhhhhchHHHHHHhcCccee
Confidence 4567899999998754 23578999999999999998755433
No 451
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=21.01 E-value=1.3e+02 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=27.4
Q ss_pred CCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 247 VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 247 ~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++||.+||-+.. +...+.|...|+.+|+.|..
T Consensus 462 v~~IYAiGDv~g~--~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 462 YDNIFCIGDANGK--QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred CCCEEEEEecCCC--ccCHHHHHHHHHHHHHHHcC
Confidence 5899999998753 24778999999999999975
No 452
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.91 E-value=1.5e+02 Score=24.64 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=9.2
Q ss_pred CCcEEecCEEEEc
Q 022185 84 NGNVIDGDAYVFA 96 (301)
Q Consensus 84 ~g~~~~ad~VI~a 96 (301)
+| .+.||.|.+.
T Consensus 149 ~G-Iy~ADVVLvp 160 (256)
T COG1701 149 EG-IYSADVVLVP 160 (256)
T ss_pred cc-ceeccEEEEe
Confidence 45 7899988875
No 453
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=20.79 E-value=1.1e+02 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=25.7
Q ss_pred CCCCeEEeeccccCCCC----CchhHHHHHHHHHHHHHH
Q 022185 246 PVEGFYLAGDYTKQKYL----ASMEGAVLSGKLCAQAIV 280 (301)
Q Consensus 246 p~~~l~~aGd~~~~~~~----~~v~gA~~SG~~aA~~i~ 280 (301)
+++|||.||.-.....+ .|---|+.||..||+.|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 48999999987765322 244567889999998874
No 454
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.07 E-value=1.7e+02 Score=27.05 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=26.3
Q ss_pred CCCCCCCeEEeeccccCCCCCchhHHHHHHHHHHHHHHH
Q 022185 243 QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 281 (301)
Q Consensus 243 ~~~p~~~l~~aGd~~~~~~~~~v~gA~~SG~~aA~~i~~ 281 (301)
.++..+++|.+||-+... ....-|...|..++..+..
T Consensus 279 ~~t~~~~IyaiGD~~~~~--~~~~~a~~~~~~~~~~~~~ 315 (438)
T PRK07251 279 CQTSVPGVFAVGDVNGGP--QFTYISLDDFRIVFGYLTG 315 (438)
T ss_pred cccCCCCEEEeeecCCCc--ccHhHHHHHHHHHHHHHcC
Confidence 456679999999977532 3456677777777777764
Done!