Query 022186
Match_columns 301
No_of_seqs 51 out of 53
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uru_A Amphiphysin; endocytosi 51.3 34 0.0012 28.7 6.5 60 103-162 180-239 (244)
2 3fse_A Two-domain protein cont 44.8 66 0.0023 30.3 7.9 109 107-225 240-360 (365)
3 3r84_A Mediator of RNA polymer 42.6 53 0.0018 25.8 5.8 38 96-133 1-38 (86)
4 1y1u_A Signal transducer and a 37.1 2.7E+02 0.0093 28.3 11.4 98 98-216 77-176 (585)
5 2fic_A Bridging integrator 1; 35.2 53 0.0018 28.0 5.2 56 105-160 195-250 (251)
6 2l5g_B Putative uncharacterize 27.2 18 0.00061 25.4 0.7 18 63-80 8-25 (42)
7 3zrx_A AF1503 protein, osmolar 26.7 1.5E+02 0.0053 20.2 7.8 55 60-122 8-63 (115)
8 1m46_B IQ4, IQ4 motif from MYO 24.4 36 0.0012 21.5 1.6 15 61-75 1-15 (26)
9 4fla_A Regulation of nuclear P 24.0 2.9E+02 0.0099 23.2 7.7 59 69-127 44-106 (152)
10 2kk1_A Tyrosine-protein kinase 20.3 77 0.0026 26.9 3.4 35 181-215 62-106 (135)
No 1
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=51.34 E-value=34 Score=28.67 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhhHHHHHHHHHHhHHHHHHHh
Q 022186 103 ETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTAS 162 (301)
Q Consensus 103 e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHr~vVeLL~lavsfIe~Lee~ 162 (301)
+....+|..|..=|..=..++.....|.....+-+++.||+.+++++..+...+.+|...
T Consensus 180 ~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~ 239 (244)
T 1uru_A 180 RTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATE 239 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445578888888888888888888899999999999999999999999999999998876
No 2
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=44.77 E-value=66 Score=30.29 Aligned_cols=109 Identities=16% Similarity=0.253 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhchHHHHHHHhccc--cCCCcchhh-------hhhhHH--HHHHHHHHhHHHHHHHhHhhhhhcccccCC
Q 022186 107 RITTILKDVIQNKDRIIARLQQPY--SLDCIPVEA-------EYQKQF--SELLMKAASDYGALTASVADFQWSQSFKEP 175 (301)
Q Consensus 107 ~mnsHLeaVLkeK~~LrqRLqkP~--~~enLPVEA-------~yHr~v--VeLL~lavsfIe~Lee~Le~I~W~snFk~~ 175 (301)
.+.++|++++++|.+=++||..=+ -++.....| .++--+ .+-+..+-.-|+-+++-+.++.=..+-...
T Consensus 240 ~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~d 319 (365)
T 3fse_A 240 EAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIANQYAKVKTALTGSDDIYQIRSALGDIQTGIGDIGNLCAMYTD 319 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC---------------CHHHHHHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhHHHHHHHHHhcCCChHHHHHHHhcchhhhHHHHHHHHHhcCC
Confidence 456678888888876555554211 222222221 111111 222223333344444455554444444455
Q ss_pred CcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc-CCCCcccCCC
Q 022186 176 PSIWGMLRPIPVALASCTRFFEAMSAMRESFATLQHLRVG-DSASSLPITP 225 (301)
Q Consensus 176 p~v~~~Lr~Ip~aLasc~~~~ea~s~~r~~~a~l~~~r~~-~~~~~~~~~~ 225 (301)
|..-..|.+| +.=++++.+-.+.||+-|.| ..-.+.|+|-
T Consensus 320 p~~~~i~~~i----------~~~l~~~e~~~~~l~~~~~~~~~~~~~~~~~ 360 (365)
T 3fse_A 320 PIATAIFKEI----------YKDLVKYEQRLVSLYRTRTNATVQPPKPTTG 360 (365)
T ss_dssp HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHSCSSCCCCCS
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHhhccCCCCCCCCCch
Confidence 5555555555 44677788888999999998 5666666653
No 3
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=42.62 E-value=53 Score=25.77 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhccccCC
Q 022186 96 SEMQKKIETLSRITTILKDVIQNKDRIIARLQQPYSLD 133 (301)
Q Consensus 96 ~~L~kK~e~LQ~mnsHLeaVLkeK~~LrqRLqkP~~~e 133 (301)
.|++++.++|..+..-+-.+|++=...+.-|-.|..++
T Consensus 1 ~~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~ 38 (86)
T 3r84_A 1 GYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGN 38 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 38899999999999999999999999999999988774
No 4
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=37.10 E-value=2.7e+02 Score=28.26 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHHH-HHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhhHHHHHHHHHHhHHHHHHHhHhhhhhcccccCCC
Q 022186 98 MQKKIETLSR-ITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQSFKEPP 176 (301)
Q Consensus 98 L~kK~e~LQ~-mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHr~vVeLL~lavsfIe~Lee~Le~I~W~snFk~~p 176 (301)
+.+|.+.+++ ++.-+..+.++|.+|+..+++ .+.+++.+.+.+ |.+.|....+-|..--.-
T Consensus 77 ~~~~~~~~~~~lq~~~~~L~~~R~~l~~~~~~----------------~l~~~~~lq~~l--l~~eL~~WKrrQq~a~iG 138 (585)
T 1y1u_A 77 LQQKQVSLETWLQREAQTLQQYRVELAEKHQK----------------TLQLLRKQQTII--LDDELIQWKRRQQLAGNG 138 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH--HHTHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Confidence 5555554433 444455556666555443332 233333333332 334444444444444332
Q ss_pred cccc-cccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcC
Q 022186 177 SIWG-MLRPIPVALASCTRFFEAMSAMRESFATLQHLRVGD 216 (301)
Q Consensus 177 ~v~~-~Lr~Ip~aLasc~~~~ea~s~~r~~~a~l~~~r~~~ 216 (301)
+-.+ +|+.| =.-|+..-|++-++|+-+..|.+++...
T Consensus 139 ~p~~~~LD~l---Q~w~e~lae~l~q~rqql~~l~~l~~~~ 176 (585)
T 1y1u_A 139 GPPEGSLDVL---QSWCEKLAEIIWQNRQQIRRAEHLCQQL 176 (585)
T ss_dssp CCCCCCTHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 2234 77766 3358888888889999999888888753
No 5
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=35.16 E-value=53 Score=27.99 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhccccCCCcchhhhhhhHHHHHHHHHHhHHHHHH
Q 022186 105 LSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALT 160 (301)
Q Consensus 105 LQ~mnsHLeaVLkeK~~LrqRLqkP~~~enLPVEA~yHr~vVeLL~lavsfIe~Le 160 (301)
...+|+.|..=|..=-.++.-+..|.-...+-++..||+.+.+++..+...+.+|.
T Consensus 195 ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 195 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34667777777777777777777888888899999999999988888877776654
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.24 E-value=18 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcccce
Q 022186 63 LRELTAVQRKIADLQVEL 80 (301)
Q Consensus 63 LrQIT~lQ~eLdq~nLEI 80 (301)
|++|..+-+||+++.-+|
T Consensus 8 ~qkI~kVdrEI~Kte~kI 25 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQI 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777888888776655
No 7
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=26.74 E-value=1.5e+02 Score=20.18 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhcccceeeecccccccccc-ChhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 022186 60 IRVLRELTAVQRKIADLQVELQGRKDDKNVAHLT-HVSEMQKKIETLSRITTILKDVIQNKDRI 122 (301)
Q Consensus 60 ~s~LrQIT~lQ~eLdq~nLEIelLklDKeTADlt-H~~~L~kK~e~LQ~mnsHLeaVLkeK~~L 122 (301)
++-|++++..-.+|.+-++.... ++. ..++++.-...+..|...|+..++++..+
T Consensus 8 ~~pl~~l~~~~~~i~~gdl~~~~--------~~~~~~dEi~~l~~~~n~m~~~l~~~~~~~~~~ 63 (115)
T 3zrx_A 8 TRPIIELSNTFDKIAEGNLEAEV--------PHQNRADEIGILAKSIERLRRSLKQLADDRTLL 63 (115)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCC--------TTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccccC--------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777765554321 222 46788999999999999999998875543
No 8
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=24.42 E-value=36 Score=21.47 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhh
Q 022186 61 RVLRELTAVQRKIAD 75 (301)
Q Consensus 61 s~LrQIT~lQ~eLdq 75 (301)
++||-||++|+.|.+
T Consensus 1 svlrtitnlqkkirk 15 (26)
T 1m46_B 1 SVLRTITNLQKKIRK 15 (26)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 468889999887764
No 9
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.00 E-value=2.9e+02 Score=23.18 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHhhcccceeeeccccccccccChhHHHH----HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 022186 69 VQRKIADLQVELQGRKDDKNVAHLTHVSEMQK----KIETLSRITTILKDVIQNKDRIIARLQ 127 (301)
Q Consensus 69 lQ~eLdq~nLEIelLklDKeTADltH~~~L~k----K~e~LQ~mnsHLeaVLkeK~~LrqRLq 127 (301)
++++|.++=.|++-...=+..-|-.+...|.+ -|..|...|.=|++=++.+..|.+=|.
T Consensus 44 vrq~Ia~LP~eVsd~s~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 44 VRQKIASLPQEVQDVSLLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHTSCGGGTCGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccCHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777666555555556555555544 467788888888888888877766553
No 10
>2kk1_A Tyrosine-protein kinase ABL2; methods development, tyrosin protein kinase ABL2, F-actin binding domain, NESG, alternative splicing, ATP-binding; NMR {Homo sapiens}
Probab=20.32 E-value=77 Score=26.94 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=26.8
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHH----------HHHHhhhc
Q 022186 181 MLRPIPVALASCTRFFEAMSAMRESFA----------TLQHLRVG 215 (301)
Q Consensus 181 ~Lr~Ip~aLasc~~~~ea~s~~r~~~a----------~l~~~r~~ 215 (301)
.+..++--+..|+.|-+++.+||.-|| +||+||+-
T Consensus 62 v~d~~h~L~~~C~~yvD~i~q~rnKFaFREavsrLe~slqeL~~~ 106 (135)
T 2kk1_A 62 LVDTGHQLLDYCSGYVDCIPQTRNKFAFREAVSKLELSLQELQVS 106 (135)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhhhhHHhhcccchhcccchhhHHHHHHHHHHHHHHHHHhccC
Confidence 467777789999999998888754443 67888875
Done!