BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022188
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P N + +VL+G+TG GKSATGNSILGRK F + + +TK CE +++ K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK 134
DTPG+FD + KEI++C+ + G HA L+V + R+++EE A ++ FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGT 194
+ I++FT DDL D L D+L E P+ ++++ + +R +NK A+
Sbjct: 143 RARSFXILIFTRKDDLGD--TNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEV 234
Q QLL L+ V+ +N YT+ + A E K+ +
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXYQRAEEEIQKQTQA 238
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 13/233 (5%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT+ C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80 FDLSAGSEFVG-KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
F G +E C ++ G HA L+V + RF+ +++ AV ++ ++FG++V
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE--- 195
+M++VFT +DL +L D++ + + L+E++ C R FDN+ A G E
Sbjct: 140 WMVIVFTRKEDLAG--GSLHDYVSNTENRALRELVAECGGRVCAFDNR----ATGREQEA 193
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKREISKL 248
QV QLL +V +++++ G Y++E+ A LR E + L+ ++R +++
Sbjct: 194 QVVQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPE-ERLRRVAERVAARV 245
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 119/215 (55%), Gaps = 9/215 (4%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+ ++V +IDTP +F E + KE+ +C ++ G H L+V + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
R+ +FG++ + IV+FT +DL +L D++ K L +++ C R F+N
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
+ + + +QV++L+ + ++++ G YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELMDCIEDLLMEKNGDHYTNGL 218
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 117/205 (57%), Gaps = 5/205 (2%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID 75
S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN 135
TP +F E + KE+ +C ++ G H L+V + R++ +++ A R+ +FG++
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTE 195
+ IV+FT +DL + +L D++ K L +++ C R F+N+ + + +
Sbjct: 120 AMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DD 176
Query: 196 QVRQLLSLVNSVIVQNGGQPYTDEL 220
QV++L+ + ++++ G YT+ L
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGL 201
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
+F E + KE+ +C ++ G H L+V + R++ +++ A R+ +FG++
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVR 198
+ IV+FT +DL + +L D++ K L +++ C R F+N+ + + +QV+
Sbjct: 120 HTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQ-DDQVK 176
Query: 199 QLLSLVNSVIVQNGGQPYTDEL 220
+L+ + ++++ G YT+ L
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGL 198
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 10 WKPTS----PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125
+ ++V +IDTP F E + KE+ +C ++ G H L+V + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAA 126
Query: 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185
R+ +FG++ + IV+FT +DL +L D+ K L +++ C R F+N
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDLNG--GSLXDYXHDSDNKALSKLVAACGGRICAFNN 184
Query: 186 KTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220
+ + + +QV++L + ++ + G YT+ L
Sbjct: 185 RAEGSNQ-DDQVKELXDCIEDLLXEKNGDHYTNGL 218
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
+ AG +V + ++ + + I L V + R + ++ V + FGK ++
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
++V T E + E F + LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDELLKTI 186
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 DLSAGSEFVGKEIVKCLG--MAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVF 137
+ AG +V + ++ + + I L V + R + ++ V + FGK ++
Sbjct: 96 E--AG--YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIW 151
Query: 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172
++V T E + E F LK I
Sbjct: 152 CKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTI 186
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 81 D 81
+
Sbjct: 96 E 96
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDTPGLI 98
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
+ ++ + I+K + K I L V + R ++ + + FGK +++
Sbjct: 99 EGGYIND-MALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
IV T
Sbjct: 157 AIVALT 162
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV++LG+ G GKS+T NS++G + + S + + + T+ G +N+IDTPGL
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 81 D 81
+
Sbjct: 95 E 95
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++ G+ G GKS+T NSI+G + S S + + + + G +N+IDTPGL
Sbjct: 41 TILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDTPGLI 98
Query: 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDY 139
+ ++ I+K + K I L V + R ++ + + FGK +++
Sbjct: 99 EGGYIND-XALNIIKSFLLDKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
Query: 140 MIVVFT 145
IV T
Sbjct: 157 AIVALT 162
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGL 79
V ++G+ GKS N++LG K S K +L +G Q+V +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR---GILTEGRRQIV-FVDTPGL 65
Query: 80 F-DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138
+ A EF+ +E+ + L ++A + V + + + E+E L L GK
Sbjct: 66 HKPMDALGEFMDQEVYEALA----DVNAVVWVVDLRHPPTPEDELVARALKPLVGK---- 117
Query: 139 YMIVVFTGGDDLEDHEKTLEDFLG--HE-CPKPLKEILQLCDNRCV 181
+ + G+ L D K E+ + HE P+ +L D R V
Sbjct: 118 --VPILLVGNKL-DAAKYPEEAMKAYHELLPEAEPRMLSALDERQV 160
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 67
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 68 ASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGMPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A + +G T+ ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDV-LREHIHIDGXPLHIIDTAGLRE 64
Query: 82 LSAGSEFVGKE 92
S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI 74
P G + L GR+ GKS+ NS++ RK ++ G T+T ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 15 PSNG-ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNV 73
P G R +V+ GR GKS+ N+++G+ S +G T K+ L V +
Sbjct: 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTL 87
Query: 74 IDTPGLFDL 82
+DTPGL D+
Sbjct: 88 VDTPGLDDV 96
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 225 TELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFM 270
+EL +KK+E+ +Y E +L+ + S +DRI M M FFM
Sbjct: 385 SELEEKKSELRHKLKYVPHEYIELIEIARNSTQDRILEMKVMEFFM 430
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 225 TELRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFM 270
+EL +KK+E+ +Y E +L+ + S +DRI M M FFM
Sbjct: 388 SELEEKKSELRHKLKYVPHEYIELIEIARNSTQDRILEMKVMEFFM 433
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
S+ +G +V+ + + L + T + +E
Sbjct: 71 -PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE 110
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S +G T+ + + + + +DTPG+++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122
S+ +G +V+ + + L + T + +E
Sbjct: 72 -PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE 111
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V T
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLV----TMQ 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLPNL 131
++D + G+E + LG+A G ++VF VT N F S +E + P
Sbjct: 61 IWDTA------GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP-- 112
Query: 132 FGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 --RDPENFPFVVLGNKIDLENRQ 133
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRKAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 27 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 17 NGERTVVLLGRTGNGKSATGNSI---LGRKAF 45
+GER V LLG TG GK+ T + LGR A
Sbjct: 26 DGERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV- 70
S E T++++G +G GKS NS+ + S + KT +++ + ++K+G V
Sbjct: 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 71 --VNVIDTPGLFD 81
+ ++DTPG D
Sbjct: 65 LLLTIVDTPGFGD 77
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVV--NVIDT 76
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V + DT
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLVTMQIWDT 64
Query: 77 PGLFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLP 129
GL E + LG+A G ++VF VT N F S +E + P
Sbjct: 65 AGL------------ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP 112
Query: 130 NLFGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 ----RDPENFPFVVLGNKIDLENRQ 133
>pdb|3U4G|A Chain A, The Structure Of Cobt From Pyrococcus Horikoshii
Length = 337
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD- 81
+++G + G + T +IL ++A S+ E+K V+K+G I+ GL D
Sbjct: 138 IVIGESTPGGTTTAQAILWALGYEAKTSSASPENPQELKEKVIKEGFKRVGIEKGGLKDK 197
Query: 82 -LSAGSEFVGKEIVKCLGMA 100
L A EF I LG++
Sbjct: 198 PLEALKEFGDPXIATVLGLS 217
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV---V 71
E T++++G +G GKS NS+ + S + KT +++ + ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 63 TIVDTPGFGD 72
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 67/180 (37%), Gaps = 35/180 (19%)
Query: 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----------------SGVTK 56
T+P N R + + GK+ T +L G G+T
Sbjct: 7 TTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITI 66
Query: 57 TCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVV 110
T TT K D VNVIDTPG D + E+ + L + + +VV
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTI-------EVERSLRV----LDGAVVV 115
Query: 111 FSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170
F T+ + ET V R N +G Y+ + G + + ++ LGH P P++
Sbjct: 116 FCGTSGVEPQSET-VWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH-TPVPVQ 173
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVV 71
P SP V ++G +GK+ + + RK A+ + G+T+ L G+ +
Sbjct: 2 PRSP-----VVTIMGHVDHGKTTLLDKL--RKTQVAAMEAGGITQHIGAFLVSLPSGEKI 54
Query: 72 NVIDTPGLFDLSA----GSEFVGKEIVKCLGMAKDGI 104
+DTPG SA G++ +IV + A DG+
Sbjct: 55 TFLDTPGHAAFSAMRARGTQVT--DIVILVVAADDGV 89
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SAGSSGVTKTCEMKTT--VLKDGQV---V 71
E T++++G +G GKS NS+ + S + KT +++ + ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFD 81
++DTPG D
Sbjct: 91 TIVDTPGFGD 100
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 30/143 (20%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V T
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLV----TMQ 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT--NRF----SQEEETAVHRLPNL 131
++D + G+E + LG+A G ++VF VT N F S +E + P
Sbjct: 61 IWDTA------GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASP-- 112
Query: 132 FGKNVFDYMIVVFTGGDDLEDHE 154
++ ++ VV DLE+ +
Sbjct: 113 --RDPENFPFVVLGNKIDLENRQ 133
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80
TV+++GR GKS N ++ +K GVT+ ++ TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDP-VQDTVEWYGKTFKLVDTCGVF 60
Query: 81 D 81
D
Sbjct: 61 D 61
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 43/167 (25%)
Query: 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84
LG G + T N++L R+ G+T + T+ + VN+IDTPG D A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--------RGITIQTGI-TSFQWENTKVNIIDTPGHMDFLA 82
Query: 85 GSEFVGKEIVKCLGM---------AKDGIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGK 134
E+ + L + AKDG+ A ++F + +P +F
Sbjct: 83 -------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG---------IPTIFFI 126
Query: 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181
N D G DL + +++ L E +K+ ++L N CV
Sbjct: 127 NKID------QNGIDLSTVYQDIKEKLSAEI--VIKQKVELYPNVCV 165
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 105 HAFLVVFSVTNRFSQEEETAVHRL 128
HAF++VFSVT++ S EE +++L
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKL 104
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLF 80
V L G GK++ N++ G K + A+ GVT E K V G +N+ID PG +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANW--PGVT--VEKKEGVFTYKGYTINLIDLPGTY 63
Query: 81 DLSAGS 86
L S
Sbjct: 64 SLGYSS 69
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 20/97 (20%)
Query: 22 VVLLGRTGNGKSATGNSILGRK---AFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78
V++LG +G GK++ N + +K +KA+ G+ +TK V+ D ++V T
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK------EVMVDDRLV----TMQ 60
Query: 79 LFDLSAGSEFVGKEIVKCLGMA-KDGIHAFLVVFSVT 114
++D + G+E + LG+A G ++VF VT
Sbjct: 61 IWDTA------GQERFQSLGVAFYRGADCCVLVFDVT 91
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVI--DTPGL 79
V + G TG+GKS+ N++ G + A +GV + M+ K + NV+ D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-MERHPYKHPNIPNVVFWDLPGI 130
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLF 80
+ L+G GKS N++ G + + GVT E K + +G+ V+D PG++
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNW--PGVT--VEKKEGEFEYNGEKFKVVDLPGVY 65
Query: 81 DLSAGS 86
L+A S
Sbjct: 66 SLTANS 71
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V+LLG +G GKS + G + A + T E + V D + V +I ++D
Sbjct: 15 VMLLGESGVGKSTLAGTFGGLQGDNAHEMENS-EDTYERRIMV--DKEEVTLI----VYD 67
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--FSQEEETAV--------HRLPNL 131
+ + G CL AFL+VFSVT+R FS+ ET + H LP +
Sbjct: 68 IWEQGDAGGWLQDHCLQTGD----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 123
Query: 132 FGKNVFD 138
N D
Sbjct: 124 LVGNKSD 130
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 25/158 (15%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++ G N + A+G + L AF E+ +LK+G VN +D G+
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGH---------LEIVEVLLKNGADVNAVDHAGM 81
Query: 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
L + F EIV+ L K+G + N E T +H L +FG +
Sbjct: 82 TPLRLAALFGHLEIVEVL--LKNG--------ADVNANDMEGHTPLH-LAAMFGH--LEI 128
Query: 140 MIVVFTGGDDLEDHE---KTLEDFLGHECPKPLKEILQ 174
+ V+ G D+ + KT D + L EILQ
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT---KTCEMKTTVLKDGQVVNVIDTPG 78
+ L+G GKS N++ G + + GVT K E + +G+ V+D PG
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY----NGEKFKVVDLPG 59
Query: 79 LFDLSAGS 86
++ L+A S
Sbjct: 60 VYSLTANS 67
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a
Mutant Bound To Mgdp
Length = 272
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+ L+G +GK++ N I G + GVT E K+ ++K + + + D PG++
Sbjct: 6 IALIGNPASGKTSLFNLITGHN--QRVGNWPGVT--VERKSGLVKKNKDLEIQDLPGIYS 61
Query: 82 LSAGS 86
+S S
Sbjct: 62 MSPYS 66
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139
+S EFV +++CLG +K VF N F+ + ++ N F K V DY
Sbjct: 280 MSQYIEFVADRLLECLGCSK--------VFHSKNPFNWMDLISLQGKTNFFEKRVADY 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,967,349
Number of Sequences: 62578
Number of extensions: 371669
Number of successful extensions: 1191
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 61
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)