Query 022188
Match_columns 301
No_of_seqs 227 out of 2878
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 8.3E-35 1.8E-39 238.3 17.6 204 20-227 1-204 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 4.8E-33 1E-37 225.9 21.5 195 20-220 1-195 (196)
3 COG1159 Era GTPase [General fu 99.9 6.7E-25 1.5E-29 180.7 16.6 177 20-222 7-184 (298)
4 TIGR00991 3a0901s02IAP34 GTP-b 99.9 7.8E-22 1.7E-26 166.3 17.4 193 13-210 32-245 (313)
5 TIGR00993 3a0901s04IAP86 chlor 99.9 4.2E-21 9.2E-26 173.9 19.5 162 19-184 118-287 (763)
6 PF02421 FeoB_N: Ferrous iron 99.9 9.7E-22 2.1E-26 150.8 13.0 155 20-204 1-156 (156)
7 TIGR00436 era GTP-binding prot 99.9 8.7E-21 1.9E-25 161.3 17.3 172 21-220 2-174 (270)
8 PRK00089 era GTPase Era; Revie 99.9 3E-20 6.6E-25 160.1 16.7 174 20-219 6-180 (292)
9 cd01853 Toc34_like Toc34-like 99.8 5.4E-20 1.2E-24 153.3 15.1 132 17-152 29-164 (249)
10 PRK15494 era GTPase Era; Provi 99.8 9.9E-20 2.1E-24 159.1 17.1 172 20-220 53-226 (339)
11 COG1160 Predicted GTPases [Gen 99.8 6.1E-20 1.3E-24 159.8 15.5 161 20-208 4-164 (444)
12 COG1160 Predicted GTPases [Gen 99.8 6E-19 1.3E-23 153.6 16.2 177 18-212 177-354 (444)
13 COG0218 Predicted GTPase [Gene 99.8 4E-18 8.8E-23 133.5 18.6 169 18-209 23-197 (200)
14 cd01897 NOG NOG1 is a nucleola 99.8 2.8E-18 6E-23 135.8 16.7 163 20-208 1-167 (168)
15 COG0486 ThdF Predicted GTPase 99.8 8.8E-18 1.9E-22 146.8 20.4 164 17-211 215-378 (454)
16 cd04171 SelB SelB subfamily. 99.8 5.4E-18 1.2E-22 133.4 17.5 157 21-206 2-163 (164)
17 cd01898 Obg Obg subfamily. Th 99.8 3.2E-18 6.9E-23 135.7 16.0 164 21-207 2-169 (170)
18 cd04163 Era Era subfamily. Er 99.8 5.3E-18 1.1E-22 133.5 16.6 164 19-207 3-167 (168)
19 PRK00454 engB GTP-binding prot 99.8 2.1E-17 4.6E-22 134.1 20.1 169 18-209 23-194 (196)
20 cd01886 EF-G Elongation factor 99.8 1.5E-18 3.2E-23 146.8 13.3 213 21-267 1-237 (270)
21 PRK00093 GTP-binding protein D 99.8 2E-17 4.3E-22 150.4 21.3 174 18-211 172-346 (435)
22 PRK12299 obgE GTPase CgtA; Rev 99.8 1.6E-17 3.4E-22 144.3 19.6 168 21-210 160-329 (335)
23 TIGR03594 GTPase_EngA ribosome 99.8 1.8E-17 3.8E-22 150.6 20.8 175 18-211 171-346 (429)
24 PRK12298 obgE GTPase CgtA; Rev 99.8 1.2E-17 2.6E-22 147.9 18.7 176 21-220 161-343 (390)
25 cd01895 EngA2 EngA2 subfamily. 99.8 1.1E-17 2.5E-22 132.6 16.9 171 19-207 2-173 (174)
26 TIGR03598 GTPase_YsxC ribosome 99.8 1.2E-17 2.7E-22 133.5 17.1 157 17-197 16-178 (179)
27 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.2E-17 2.6E-22 130.3 16.7 155 20-208 2-156 (157)
28 PF01926 MMR_HSR1: 50S ribosom 99.8 4.2E-18 9.2E-23 126.3 13.0 116 21-146 1-116 (116)
29 cd01894 EngA1 EngA1 subfamily. 99.8 6.1E-18 1.3E-22 132.1 14.5 155 23-207 1-156 (157)
30 PRK03003 GTP-binding protein D 99.8 4.7E-17 1E-21 148.8 21.3 175 18-214 210-387 (472)
31 PRK05291 trmE tRNA modificatio 99.8 6.2E-17 1.3E-21 146.6 21.4 158 18-210 214-371 (449)
32 cd01878 HflX HflX subfamily. 99.8 2.8E-17 6E-22 134.3 16.8 164 17-207 39-203 (204)
33 COG0370 FeoB Fe2+ transport sy 99.8 6.3E-17 1.4E-21 147.3 20.5 176 20-226 4-184 (653)
34 PF00009 GTP_EFTU: Elongation 99.8 5.7E-18 1.2E-22 136.5 12.1 162 18-209 2-187 (188)
35 cd00881 GTP_translation_factor 99.8 2.3E-17 5E-22 132.9 15.4 165 21-209 1-187 (189)
36 COG3596 Predicted GTPase [Gene 99.8 2E-17 4.4E-22 134.8 14.6 180 18-214 38-227 (296)
37 COG1084 Predicted GTPase [Gene 99.8 5.5E-17 1.2E-21 135.3 17.3 131 12-152 161-295 (346)
38 TIGR02729 Obg_CgtA Obg family 99.8 4.4E-17 9.5E-22 141.5 17.6 166 20-208 158-328 (329)
39 cd01888 eIF2_gamma eIF2-gamma 99.8 2.6E-17 5.6E-22 134.2 15.2 163 20-210 1-200 (203)
40 TIGR03594 GTPase_EngA ribosome 99.8 4.2E-17 9E-22 148.2 18.1 160 21-210 1-161 (429)
41 PRK09554 feoB ferrous iron tra 99.8 2.5E-16 5.4E-21 150.1 23.6 181 20-227 4-188 (772)
42 cd01865 Rab3 Rab3 subfamily. 99.8 6.9E-17 1.5E-21 127.5 16.5 159 20-209 2-163 (165)
43 TIGR03156 GTP_HflX GTP-binding 99.8 6.4E-17 1.4E-21 141.7 17.9 162 18-207 188-350 (351)
44 cd01867 Rab8_Rab10_Rab13_like 99.7 1.4E-16 3E-21 126.0 17.7 159 19-208 3-164 (167)
45 cd04119 RJL RJL (RabJ-Like) su 99.7 6.5E-17 1.4E-21 127.7 15.7 161 20-208 1-166 (168)
46 cd01860 Rab5_related Rab5-rela 99.7 1.3E-16 2.9E-21 125.5 17.4 160 20-208 2-162 (163)
47 PRK03003 GTP-binding protein D 99.7 7.5E-17 1.6E-21 147.5 18.3 162 19-210 38-200 (472)
48 cd04124 RabL2 RabL2 subfamily. 99.7 6.7E-17 1.4E-21 127.0 15.2 156 20-210 1-159 (161)
49 cd01866 Rab2 Rab2 subfamily. 99.7 1.7E-16 3.6E-21 125.7 17.6 158 20-208 5-165 (168)
50 cd04122 Rab14 Rab14 subfamily. 99.7 1.1E-16 2.3E-21 126.5 16.3 156 20-208 3-163 (166)
51 cd01864 Rab19 Rab19 subfamily. 99.7 1.8E-16 3.8E-21 125.1 17.3 158 19-207 3-164 (165)
52 cd04113 Rab4 Rab4 subfamily. 99.7 1.4E-16 3E-21 125.2 16.4 156 20-206 1-159 (161)
53 PRK12297 obgE GTPase CgtA; Rev 99.7 1.9E-16 4.1E-21 141.0 19.2 166 21-211 160-329 (424)
54 cd04112 Rab26 Rab26 subfamily. 99.7 1.4E-16 3E-21 128.9 16.5 161 20-211 1-165 (191)
55 cd04170 EF-G_bact Elongation f 99.7 1.7E-17 3.6E-22 141.2 11.7 212 21-266 1-234 (268)
56 cd01861 Rab6 Rab6 subfamily. 99.7 1.8E-16 3.8E-21 124.5 16.7 156 21-207 2-160 (161)
57 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 9.7E-17 2.1E-21 126.8 15.3 159 21-208 2-165 (168)
58 PRK04213 GTP-binding protein; 99.7 2.8E-16 6E-21 128.1 18.3 168 18-210 8-193 (201)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.1E-16 4.6E-21 124.8 17.0 158 20-208 3-163 (166)
60 cd04160 Arfrp1 Arfrp1 subfamil 99.7 4.4E-17 9.5E-22 128.8 13.0 159 21-205 1-165 (167)
61 cd04140 ARHI_like ARHI subfami 99.7 1.2E-16 2.6E-21 126.1 15.5 160 20-207 2-163 (165)
62 PRK12296 obgE GTPase CgtA; Rev 99.7 1.9E-16 4.1E-21 142.7 18.5 169 20-211 160-342 (500)
63 cd04142 RRP22 RRP22 subfamily. 99.7 4.3E-16 9.4E-21 126.3 18.4 171 20-213 1-178 (198)
64 cd01879 FeoB Ferrous iron tran 99.7 1.8E-16 3.8E-21 124.0 15.7 155 24-207 1-155 (158)
65 smart00175 RAB Rab subfamily o 99.7 2E-16 4.3E-21 124.5 15.8 159 20-209 1-162 (164)
66 PRK09518 bifunctional cytidyla 99.7 4.5E-16 9.8E-21 148.8 21.2 174 18-212 449-624 (712)
67 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3E-16 6.5E-21 123.5 16.8 158 20-208 3-163 (164)
68 cd01868 Rab11_like Rab11-like. 99.7 3.8E-16 8.2E-21 123.2 17.3 157 20-207 4-163 (165)
69 PRK00093 GTP-binding protein D 99.7 2.2E-16 4.7E-21 143.6 17.9 158 20-206 2-159 (435)
70 PLN03071 GTP-binding nuclear p 99.7 4.8E-16 1E-20 128.2 18.3 161 17-210 11-173 (219)
71 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.3E-15 2.9E-20 137.2 22.5 122 18-150 202-323 (442)
72 cd04120 Rab12 Rab12 subfamily. 99.7 2.1E-16 4.5E-21 128.3 15.7 159 21-210 2-164 (202)
73 cd04109 Rab28 Rab28 subfamily. 99.7 2.2E-16 4.8E-21 130.0 16.1 161 20-210 1-167 (215)
74 cd04121 Rab40 Rab40 subfamily. 99.7 3.4E-16 7.4E-21 125.8 16.6 163 19-213 6-171 (189)
75 cd04154 Arl2 Arl2 subfamily. 99.7 1.9E-16 4E-21 126.0 15.0 154 16-205 11-171 (173)
76 cd01889 SelB_euk SelB subfamil 99.7 1.3E-16 2.8E-21 129.1 14.2 166 20-210 1-187 (192)
77 cd01876 YihA_EngB The YihA (En 99.7 6.3E-16 1.4E-20 121.9 17.8 163 22-207 2-169 (170)
78 cd01890 LepA LepA subfamily. 99.7 9.8E-17 2.1E-21 128.3 13.1 160 20-209 1-177 (179)
79 cd04138 H_N_K_Ras_like H-Ras/N 99.7 5.4E-16 1.2E-20 121.6 17.1 156 20-207 2-160 (162)
80 cd04110 Rab35 Rab35 subfamily. 99.7 3E-16 6.4E-21 127.7 16.1 159 19-209 6-167 (199)
81 cd01850 CDC_Septin CDC/Septin. 99.7 5.7E-16 1.2E-20 131.6 18.2 154 19-186 4-185 (276)
82 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.6E-16 7.8E-21 127.4 16.4 160 20-210 1-169 (201)
83 cd01881 Obg_like The Obg-like 99.7 1.2E-16 2.6E-21 127.2 13.3 161 24-206 1-174 (176)
84 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 7.6E-16 1.6E-20 122.3 17.8 160 20-210 3-165 (172)
85 cd04104 p47_IIGP_like p47 (47- 99.7 4.6E-16 1E-20 126.2 16.7 171 20-210 2-185 (197)
86 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 3.6E-16 7.8E-21 123.9 15.7 159 21-210 2-166 (170)
87 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.6E-16 5.7E-21 124.0 14.9 160 22-205 2-162 (164)
88 PLN03110 Rab GTPase; Provision 99.7 5.3E-16 1.1E-20 127.7 17.3 162 18-210 11-175 (216)
89 cd04158 ARD1 ARD1 subfamily. 99.7 2.4E-16 5.2E-21 124.9 14.6 162 21-211 1-163 (169)
90 cd04123 Rab21 Rab21 subfamily. 99.7 4.3E-16 9.4E-21 122.2 15.9 157 20-207 1-160 (162)
91 cd00877 Ran Ran (Ras-related n 99.7 3.5E-16 7.7E-21 123.5 15.4 156 20-210 1-160 (166)
92 smart00173 RAS Ras subfamily o 99.7 3.5E-16 7.5E-21 123.2 15.2 159 20-209 1-162 (164)
93 cd04144 Ras2 Ras2 subfamily. 99.7 3.4E-16 7.3E-21 126.4 15.3 160 21-210 1-164 (190)
94 cd04125 RabA_like RabA-like su 99.7 4.9E-16 1.1E-20 125.3 16.2 160 20-210 1-163 (188)
95 KOG0084 GTPase Rab1/YPT1, smal 99.7 4.4E-16 9.5E-21 120.5 14.9 164 19-211 9-174 (205)
96 cd01884 EF_Tu EF-Tu subfamily. 99.7 3.3E-16 7.2E-21 126.3 14.7 136 19-177 2-152 (195)
97 PRK09518 bifunctional cytidyla 99.7 6.7E-16 1.5E-20 147.6 19.2 162 19-210 275-437 (712)
98 cd04136 Rap_like Rap-like subf 99.7 6.1E-16 1.3E-20 121.6 15.9 157 20-207 2-161 (163)
99 cd00154 Rab Rab family. Rab G 99.7 4.5E-16 9.8E-21 121.4 15.0 156 20-205 1-158 (159)
100 cd04127 Rab27A Rab27a subfamil 99.7 9.2E-16 2E-20 122.8 17.1 163 19-208 4-176 (180)
101 cd04101 RabL4 RabL4 (Rab-like4 99.7 6.6E-16 1.4E-20 121.6 15.9 156 20-207 1-162 (164)
102 cd04117 Rab15 Rab15 subfamily. 99.7 5.5E-16 1.2E-20 121.8 15.3 154 21-207 2-160 (161)
103 PRK11058 GTPase HflX; Provisio 99.7 6.4E-16 1.4E-20 138.5 17.6 165 20-210 198-363 (426)
104 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.9E-16 4.1E-21 129.6 13.1 152 21-199 1-184 (208)
105 COG2262 HflX GTPases [General 99.7 1.6E-16 3.4E-21 136.6 12.9 164 17-210 190-357 (411)
106 cd04106 Rab23_lke Rab23-like s 99.7 8.4E-16 1.8E-20 120.7 16.2 155 21-206 2-160 (162)
107 cd04168 TetM_like Tet(M)-like 99.7 2.7E-16 5.9E-21 130.7 14.0 187 21-266 1-203 (237)
108 cd04175 Rap1 Rap1 subgroup. T 99.7 7.9E-16 1.7E-20 121.2 15.5 158 20-208 2-162 (164)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 6.6E-16 1.4E-20 124.0 15.1 167 19-209 3-170 (183)
110 cd01863 Rab18 Rab18 subfamily. 99.7 9.9E-16 2.1E-20 120.2 15.6 158 20-206 1-159 (161)
111 cd04157 Arl6 Arl6 subfamily. 99.7 3.9E-16 8.5E-21 122.6 13.4 158 21-205 1-160 (162)
112 cd01891 TypA_BipA TypA (tyrosi 99.7 8.8E-16 1.9E-20 124.4 15.8 117 19-152 2-132 (194)
113 PRK15467 ethanolamine utilizat 99.7 2.3E-16 4.9E-21 123.4 11.8 145 20-210 2-148 (158)
114 cd01893 Miro1 Miro1 subfamily. 99.7 1.2E-15 2.7E-20 120.4 16.2 154 21-208 2-163 (166)
115 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.4E-16 5.1E-21 123.6 12.0 157 21-206 1-159 (160)
116 cd01862 Rab7 Rab7 subfamily. 99.7 1.7E-15 3.8E-20 120.1 16.9 162 20-210 1-168 (172)
117 PLN03118 Rab family protein; P 99.7 2E-15 4.4E-20 124.0 17.4 162 18-210 13-178 (211)
118 cd04132 Rho4_like Rho4-like su 99.7 1.6E-15 3.4E-20 122.2 16.4 162 20-210 1-168 (187)
119 cd04114 Rab30 Rab30 subfamily. 99.7 1.4E-15 2.9E-20 120.4 15.8 158 19-207 7-167 (169)
120 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.8E-15 3.9E-20 121.2 16.4 161 20-210 1-167 (182)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 8.3E-16 1.8E-20 122.4 14.3 157 19-205 15-172 (174)
122 cd04149 Arf6 Arf6 subfamily. 99.7 5.5E-16 1.2E-20 122.7 13.1 153 19-205 9-166 (168)
123 smart00177 ARF ARF-like small 99.7 1.2E-15 2.6E-20 121.5 15.2 159 19-208 13-173 (175)
124 cd04176 Rap2 Rap2 subgroup. T 99.7 1.2E-15 2.5E-20 120.1 14.8 156 20-207 2-161 (163)
125 PTZ00369 Ras-like protein; Pro 99.7 1.9E-15 4.1E-20 121.9 16.4 161 19-210 5-168 (189)
126 cd04118 Rab24 Rab24 subfamily. 99.7 1.1E-15 2.4E-20 123.7 15.1 162 20-209 1-166 (193)
127 smart00178 SAR Sar1p-like memb 99.7 4.4E-16 9.6E-21 125.1 12.5 163 18-206 16-182 (184)
128 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.6E-15 3.4E-20 120.3 15.5 160 20-208 3-168 (170)
129 cd04150 Arf1_5_like Arf1-Arf5- 99.7 6.3E-16 1.4E-20 121.2 12.9 154 21-205 2-157 (159)
130 KOG1423 Ras-like GTPase ERA [C 99.7 3.8E-16 8.2E-21 128.7 12.0 194 19-220 72-281 (379)
131 cd00878 Arf_Arl Arf (ADP-ribos 99.7 9.2E-16 2E-20 120.1 13.9 155 21-206 1-157 (158)
132 PTZ00133 ADP-ribosylation fact 99.7 1.5E-15 3.2E-20 121.8 14.8 161 18-209 16-178 (182)
133 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.1E-14 2.4E-19 120.3 20.3 167 18-209 12-188 (232)
134 cd04134 Rho3 Rho3 subfamily. 99.7 2.5E-15 5.3E-20 121.3 16.2 165 20-210 1-175 (189)
135 cd04111 Rab39 Rab39 subfamily. 99.7 2.7E-15 5.8E-20 123.1 16.5 162 20-210 3-167 (211)
136 cd04116 Rab9 Rab9 subfamily. 99.7 2.9E-15 6.2E-20 118.7 16.2 159 18-206 4-168 (170)
137 cd04151 Arl1 Arl1 subfamily. 99.7 6.1E-16 1.3E-20 121.1 12.1 155 21-206 1-157 (158)
138 cd04155 Arl3 Arl3 subfamily. 99.7 8.6E-16 1.9E-20 122.1 13.1 157 18-205 13-171 (173)
139 cd00880 Era_like Era (E. coli 99.7 4.2E-15 9E-20 115.8 16.7 162 24-207 1-162 (163)
140 TIGR00487 IF-2 translation ini 99.7 2.4E-15 5.3E-20 139.5 17.6 160 18-206 86-247 (587)
141 PLN00223 ADP-ribosylation fact 99.7 3.3E-15 7.2E-20 119.6 16.0 158 18-208 16-177 (181)
142 TIGR02528 EutP ethanolamine ut 99.7 7.2E-16 1.6E-20 118.5 11.7 138 21-204 2-140 (142)
143 PLN03108 Rab family protein; P 99.7 3.6E-15 7.7E-20 122.3 16.5 159 19-208 6-167 (210)
144 cd00879 Sar1 Sar1 subfamily. 99.7 1.5E-15 3.3E-20 122.6 14.1 167 18-207 18-189 (190)
145 PRK10512 selenocysteinyl-tRNA- 99.7 3.2E-15 7E-20 139.7 18.1 162 21-210 2-167 (614)
146 cd01874 Cdc42 Cdc42 subfamily. 99.7 6.4E-15 1.4E-19 117.3 17.1 161 20-206 2-172 (175)
147 smart00174 RHO Rho (Ras homolo 99.7 4.7E-15 1E-19 117.9 16.3 162 22-208 1-171 (174)
148 cd04146 RERG_RasL11_like RERG/ 99.7 1.6E-15 3.4E-20 119.7 13.4 158 21-208 1-163 (165)
149 cd04161 Arl2l1_Arl13_like Arl2 99.7 2.9E-15 6.2E-20 118.5 14.8 158 21-205 1-165 (167)
150 cd04159 Arl10_like Arl10-like 99.7 1.2E-15 2.6E-20 119.1 12.5 156 22-206 2-158 (159)
151 cd04139 RalA_RalB RalA/RalB su 99.7 5.4E-15 1.2E-19 116.2 16.2 158 20-208 1-161 (164)
152 COG5019 CDC3 Septin family pro 99.7 1.7E-13 3.8E-18 116.4 26.0 151 18-181 22-199 (373)
153 cd04147 Ras_dva Ras-dva subfam 99.7 4.4E-15 9.5E-20 120.7 15.9 159 21-209 1-163 (198)
154 TIGR00475 selB selenocysteine- 99.7 5.6E-15 1.2E-19 137.6 18.6 160 21-210 2-167 (581)
155 PRK05306 infB translation init 99.7 2.3E-15 5E-20 142.9 16.1 159 18-206 289-449 (787)
156 cd00157 Rho Rho (Ras homology) 99.7 3.4E-15 7.4E-20 118.3 14.8 161 20-206 1-170 (171)
157 cd04126 Rab20 Rab20 subfamily. 99.7 1E-14 2.3E-19 119.7 17.7 113 20-151 1-114 (220)
158 cd04148 RGK RGK subfamily. Th 99.7 6.5E-15 1.4E-19 121.6 16.5 161 20-210 1-164 (221)
159 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.2E-14 2.7E-19 116.2 17.3 165 18-207 4-178 (182)
160 cd01896 DRG The developmentall 99.7 1.2E-14 2.7E-19 120.6 17.9 88 21-115 2-89 (233)
161 cd00876 Ras Ras family. The R 99.7 8.6E-15 1.9E-19 114.5 16.1 155 21-206 1-158 (160)
162 cd04137 RheB Rheb (Ras Homolog 99.6 1E-14 2.2E-19 116.7 16.4 161 20-211 2-165 (180)
163 cd01875 RhoG RhoG subfamily. 99.6 2E-14 4.4E-19 116.1 18.2 165 20-209 4-177 (191)
164 PRK09866 hypothetical protein; 99.6 1.9E-13 4.1E-18 124.5 25.8 121 69-206 230-350 (741)
165 CHL00189 infB translation init 99.6 5.3E-15 1.1E-19 139.3 16.4 162 18-208 243-409 (742)
166 cd04131 Rnd Rnd subfamily. Th 99.6 1.8E-14 3.8E-19 115.0 17.2 163 20-207 2-174 (178)
167 KOG0092 GTPase Rab5/YPT51 and 99.6 4.4E-15 9.5E-20 114.5 12.8 164 19-211 5-169 (200)
168 cd04169 RF3 RF3 subfamily. Pe 99.6 5.2E-15 1.1E-19 125.1 14.5 140 19-186 2-161 (267)
169 cd01871 Rac1_like Rac1-like su 99.6 3E-14 6.5E-19 113.3 17.4 161 20-206 2-172 (174)
170 cd04177 RSR1 RSR1 subgroup. R 99.6 1.7E-14 3.7E-19 114.1 15.9 157 20-207 2-162 (168)
171 cd04133 Rop_like Rop subfamily 99.6 2.4E-14 5.1E-19 113.9 16.3 164 20-208 2-172 (176)
172 PF00735 Septin: Septin; Inte 99.6 1E-14 2.2E-19 123.7 14.7 153 20-186 5-184 (281)
173 KOG0078 GTP-binding protein SE 99.6 1.5E-14 3.1E-19 113.7 14.1 161 18-209 11-174 (207)
174 PRK12317 elongation factor 1-a 99.6 7E-15 1.5E-19 133.1 14.4 156 17-199 4-195 (425)
175 CHL00071 tufA elongation facto 99.6 1.4E-14 3E-19 130.2 16.0 138 16-177 9-162 (409)
176 TIGR00484 EF-G translation elo 99.6 6.8E-15 1.5E-19 140.4 14.7 120 16-152 7-142 (689)
177 cd01870 RhoA_like RhoA-like su 99.6 3E-14 6.5E-19 113.4 16.0 161 20-207 2-173 (175)
178 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.2E-14 2.5E-19 119.9 13.9 165 21-207 1-221 (224)
179 smart00176 RAN Ran (Ras-relate 99.6 1.9E-14 4E-19 116.7 14.8 150 25-210 1-155 (200)
180 cd04143 Rhes_like Rhes_like su 99.6 2.9E-14 6.2E-19 119.4 16.4 158 20-208 1-170 (247)
181 cd04135 Tc10 TC10 subfamily. 99.6 3.6E-14 7.8E-19 112.8 16.0 162 20-207 1-172 (174)
182 PRK12736 elongation factor Tu; 99.6 4.3E-14 9.4E-19 126.4 18.2 164 17-209 10-201 (394)
183 PF00025 Arf: ADP-ribosylation 99.6 5.8E-15 1.2E-19 117.5 11.2 162 17-207 12-174 (175)
184 cd04130 Wrch_1 Wrch-1 subfamil 99.6 2.1E-14 4.6E-19 114.2 14.4 161 20-205 1-170 (173)
185 TIGR01394 TypA_BipA GTP-bindin 99.6 2.1E-14 4.6E-19 133.6 16.5 160 20-210 2-192 (594)
186 TIGR00231 small_GTP small GTP- 99.6 4.8E-14 1E-18 109.6 16.0 153 20-205 2-160 (161)
187 cd01892 Miro2 Miro2 subfamily. 99.6 1.9E-14 4.1E-19 114.0 13.9 158 18-208 3-165 (169)
188 PLN03127 Elongation factor Tu; 99.6 2.2E-14 4.8E-19 129.5 15.8 171 16-209 58-252 (447)
189 PRK00007 elongation factor G; 99.6 2.4E-14 5.2E-19 136.5 16.1 120 16-152 7-142 (693)
190 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.3E-13 2.8E-18 113.4 18.2 163 20-207 2-174 (222)
191 PRK12735 elongation factor Tu; 99.6 5.7E-14 1.2E-18 125.7 17.5 164 17-209 10-203 (396)
192 TIGR00437 feoB ferrous iron tr 99.6 2.3E-13 5.1E-18 127.0 22.1 154 26-208 1-154 (591)
193 TIGR01393 lepA GTP-binding pro 99.6 2.4E-14 5.3E-19 133.5 15.5 162 19-210 3-181 (595)
194 KOG1191 Mitochondrial GTPase [ 99.6 9.6E-15 2.1E-19 127.7 11.9 178 18-210 267-451 (531)
195 PRK05433 GTP-binding protein L 99.6 2.5E-14 5.3E-19 133.6 15.3 161 17-210 5-185 (600)
196 KOG1489 Predicted GTP-binding 99.6 2.2E-14 4.8E-19 119.0 12.5 161 21-206 198-364 (366)
197 PRK12739 elongation factor G; 99.6 6.5E-14 1.4E-18 133.6 17.5 119 17-152 6-140 (691)
198 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.8E-13 3.8E-18 105.8 15.6 159 19-210 22-186 (221)
199 PF00071 Ras: Ras family; Int 99.6 5.9E-14 1.3E-18 110.2 13.5 157 21-208 1-160 (162)
200 cd04102 RabL3 RabL3 (Rab-like3 99.6 3.2E-13 7E-18 109.4 18.1 151 21-187 2-174 (202)
201 PTZ00132 GTP-binding nuclear p 99.6 2E-13 4.3E-18 112.5 17.1 158 18-210 8-169 (215)
202 PRK10218 GTP-binding protein; 99.6 1.1E-13 2.4E-18 128.7 17.3 118 18-152 4-135 (607)
203 TIGR00485 EF-Tu translation el 99.6 1.4E-13 3E-18 123.3 16.9 121 16-152 9-143 (394)
204 COG0480 FusA Translation elong 99.6 6E-14 1.3E-18 131.4 15.1 212 17-266 8-246 (697)
205 cd04103 Centaurin_gamma Centau 99.6 1.1E-13 2.3E-18 108.3 14.3 152 20-206 1-156 (158)
206 cd00882 Ras_like_GTPase Ras-li 99.6 6.7E-14 1.5E-18 107.8 13.0 154 24-205 1-156 (157)
207 PF10662 PduV-EutP: Ethanolami 99.6 2.5E-14 5.4E-19 107.5 10.1 140 20-205 2-142 (143)
208 PRK05124 cysN sulfate adenylyl 99.6 3.2E-14 6.9E-19 129.6 12.8 160 13-199 21-215 (474)
209 TIGR03680 eif2g_arch translati 99.6 6.1E-14 1.3E-18 125.9 14.4 164 18-209 3-196 (406)
210 cd04129 Rho2 Rho2 subfamily. 99.6 1.3E-13 2.9E-18 110.9 14.7 165 20-209 2-173 (187)
211 cd01883 EF1_alpha Eukaryotic e 99.6 2.5E-14 5.5E-19 118.0 10.6 151 21-198 1-194 (219)
212 TIGR00491 aIF-2 translation in 99.6 1.1E-13 2.3E-18 128.4 15.9 114 20-151 5-135 (590)
213 TIGR00483 EF-1_alpha translati 99.6 1.7E-13 3.7E-18 124.1 16.4 156 17-199 5-197 (426)
214 PRK00049 elongation factor Tu; 99.6 2.7E-13 5.8E-18 121.3 17.2 168 18-209 11-203 (396)
215 PRK04000 translation initiatio 99.5 1.5E-13 3.3E-18 123.3 15.5 164 18-209 8-201 (411)
216 KOG0073 GTP-binding ADP-ribosy 99.5 3.8E-13 8.3E-18 100.9 14.9 161 18-208 15-177 (185)
217 TIGR02034 CysN sulfate adenyly 99.5 5.9E-14 1.3E-18 125.9 12.8 153 20-199 1-187 (406)
218 KOG0098 GTPase Rab2, small G p 99.5 4.1E-13 8.8E-18 102.9 14.5 161 19-208 6-167 (216)
219 KOG0095 GTPase Rab30, small G 99.5 4E-13 8.7E-18 99.0 13.9 157 20-207 8-167 (213)
220 cd01873 RhoBTB RhoBTB subfamil 99.5 4.5E-13 9.7E-18 108.4 15.5 161 20-206 3-193 (195)
221 PF00350 Dynamin_N: Dynamin fa 99.5 4.8E-14 1E-18 111.5 9.5 115 22-147 1-168 (168)
222 KOG2655 Septin family protein 99.5 4.4E-13 9.6E-18 114.8 16.0 155 19-186 21-200 (366)
223 KOG0080 GTPase Rab18, small G 99.5 4E-13 8.7E-18 100.3 13.4 163 19-209 11-174 (209)
224 PRK04004 translation initiatio 99.5 5.2E-13 1.1E-17 124.3 17.3 114 19-150 6-136 (586)
225 cd04167 Snu114p Snu114p subfam 99.5 8.5E-14 1.8E-18 114.4 10.7 115 20-150 1-136 (213)
226 PRK13351 elongation factor G; 99.5 1.2E-13 2.6E-18 132.1 13.1 118 18-152 7-140 (687)
227 COG1163 DRG Predicted GTPase [ 99.5 1.2E-13 2.5E-18 115.2 11.3 164 17-209 61-289 (365)
228 COG0536 Obg Predicted GTPase [ 99.5 4.4E-13 9.6E-18 112.7 14.7 168 21-210 161-334 (369)
229 KOG0462 Elongation factor-type 99.5 2.8E-13 6E-18 119.8 13.9 168 15-212 56-238 (650)
230 COG2229 Predicted GTPase [Gene 99.5 1.7E-12 3.6E-17 99.8 16.4 156 19-206 10-175 (187)
231 PRK05506 bifunctional sulfate 99.5 2.7E-13 5.8E-18 128.4 14.8 157 15-198 20-210 (632)
232 KOG0394 Ras-related GTPase [Ge 99.5 4.3E-13 9.4E-18 102.6 12.9 162 18-211 8-180 (210)
233 KOG1547 Septin CDC10 and relat 99.5 4.9E-13 1.1E-17 106.7 13.6 157 19-188 46-228 (336)
234 KOG0087 GTPase Rab11/YPT3, sma 99.5 6.6E-13 1.4E-17 104.0 13.5 156 19-206 14-173 (222)
235 KOG0093 GTPase Rab3, small G p 99.5 4.3E-13 9.3E-18 98.7 11.4 161 19-209 21-183 (193)
236 cd01885 EF2 EF2 (for archaea a 99.5 3E-13 6.6E-18 111.0 12.0 115 20-150 1-138 (222)
237 PRK00741 prfC peptide chain re 99.5 3.9E-13 8.5E-18 123.6 14.0 119 17-152 8-146 (526)
238 KOG1490 GTP-binding protein CR 99.5 9.3E-14 2E-18 121.6 9.3 138 12-159 161-301 (620)
239 smart00053 DYNc Dynamin, GTPas 99.5 1.5E-12 3.2E-17 107.6 14.9 128 20-152 27-207 (240)
240 PTZ00141 elongation factor 1- 99.5 6.6E-13 1.4E-17 120.1 14.0 140 18-178 6-183 (446)
241 PLN03126 Elongation factor Tu; 99.5 2.6E-12 5.7E-17 116.7 17.8 138 17-177 79-231 (478)
242 KOG0079 GTP-binding protein H- 99.5 9.3E-13 2E-17 97.0 11.8 157 20-208 9-168 (198)
243 cd04105 SR_beta Signal recogni 99.5 1.5E-12 3.3E-17 106.0 14.2 115 21-152 2-124 (203)
244 PF05049 IIGP: Interferon-indu 99.5 3.4E-12 7.4E-17 111.0 16.7 175 18-212 34-221 (376)
245 TIGR00503 prfC peptide chain r 99.5 1E-12 2.2E-17 120.9 13.9 119 17-152 9-147 (527)
246 COG0532 InfB Translation initi 99.5 2.2E-12 4.7E-17 114.8 15.4 161 19-208 5-169 (509)
247 PF08477 Miro: Miro-like prote 99.5 1E-13 2.2E-18 103.1 6.0 116 21-148 1-119 (119)
248 KOG1145 Mitochondrial translat 99.5 2E-12 4.4E-17 114.5 14.8 162 18-207 152-314 (683)
249 PTZ00327 eukaryotic translatio 99.4 2.6E-12 5.7E-17 115.9 15.1 165 18-210 33-234 (460)
250 COG1100 GTPase SAR1 and relate 99.4 8.6E-12 1.9E-16 103.0 16.2 116 20-152 6-126 (219)
251 KOG1532 GTPase XAB1, interacts 99.4 9.7E-13 2.1E-17 107.1 9.8 131 69-211 116-266 (366)
252 PLN00023 GTP-binding protein; 99.4 4.4E-12 9.5E-17 108.1 14.1 122 19-151 21-165 (334)
253 KOG0088 GTPase Rab21, small G 99.4 1.1E-12 2.5E-17 97.7 9.0 159 20-208 14-174 (218)
254 TIGR02836 spore_IV_A stage IV 99.4 1.4E-11 2.9E-16 107.1 15.9 173 17-209 15-237 (492)
255 PLN00043 elongation factor 1-a 99.4 1.4E-11 3E-16 111.5 15.9 140 17-177 5-182 (447)
256 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.2E-11 9.1E-16 99.0 17.4 112 16-152 36-148 (225)
257 cd01899 Ygr210 Ygr210 subfamil 99.4 3.9E-11 8.3E-16 103.6 17.1 87 22-114 1-110 (318)
258 COG5256 TEF1 Translation elong 99.4 1.2E-11 2.7E-16 106.6 13.6 137 18-179 6-182 (428)
259 PTZ00258 GTP-binding protein; 99.4 9.9E-11 2.1E-15 103.1 18.4 91 18-114 20-126 (390)
260 TIGR03348 VI_IcmF type VI secr 99.4 2.9E-11 6.2E-16 121.4 17.1 132 20-163 112-265 (1169)
261 PRK09601 GTP-binding protein Y 99.3 1.1E-10 2.3E-15 101.7 17.6 89 20-114 3-107 (364)
262 PRK09602 translation-associate 99.3 1.1E-10 2.5E-15 103.8 18.1 89 20-114 2-113 (396)
263 PTZ00416 elongation factor 2; 99.3 1E-11 2.2E-16 120.6 12.0 117 17-150 17-157 (836)
264 COG4917 EutP Ethanolamine util 99.3 4.3E-12 9.3E-17 91.0 6.7 142 20-207 2-144 (148)
265 KOG0091 GTPase Rab39, small G 99.3 3.7E-11 8.1E-16 90.2 11.8 163 20-208 9-172 (213)
266 PLN00116 translation elongatio 99.3 2.1E-11 4.7E-16 118.5 12.2 118 17-150 17-163 (843)
267 KOG0086 GTPase Rab4, small G p 99.3 1.1E-10 2.3E-15 86.7 12.9 155 20-205 10-167 (214)
268 TIGR00490 aEF-2 translation el 99.3 1.8E-11 4E-16 117.3 11.4 119 18-152 18-153 (720)
269 KOG0070 GTP-binding ADP-ribosy 99.3 4.2E-11 9E-16 92.4 10.4 163 17-210 15-179 (181)
270 PF09439 SRPRB: Signal recogni 99.3 8.9E-12 1.9E-16 98.0 6.7 120 19-152 3-127 (181)
271 COG0481 LepA Membrane GTPase L 99.3 7.4E-11 1.6E-15 103.1 12.4 169 16-214 6-191 (603)
272 KOG3859 Septins (P-loop GTPase 99.3 6.6E-10 1.4E-14 90.9 16.9 135 19-162 42-199 (406)
273 PRK12740 elongation factor G; 99.3 3.9E-11 8.4E-16 114.8 11.4 111 25-152 1-127 (668)
274 PRK09435 membrane ATPase/prote 99.2 6E-10 1.3E-14 96.4 17.3 106 68-210 148-261 (332)
275 KOG0465 Mitochondrial elongati 99.2 4.1E-11 8.8E-16 107.5 10.3 207 15-256 35-266 (721)
276 KOG0075 GTP-binding ADP-ribosy 99.2 4.6E-11 9.9E-16 88.1 8.4 159 18-207 19-180 (186)
277 KOG0410 Predicted GTP binding 99.2 3.6E-11 7.8E-16 100.3 8.6 157 19-209 178-341 (410)
278 KOG0448 Mitofusin 1 GTPase, in 99.2 2E-09 4.3E-14 98.2 20.4 117 20-152 110-276 (749)
279 cd01900 YchF YchF subfamily. 99.2 6.5E-11 1.4E-15 99.8 10.1 87 22-114 1-103 (274)
280 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 9.5E-11 2.1E-15 96.3 10.6 122 21-152 1-126 (232)
281 PRK07560 elongation factor EF- 99.2 2.4E-11 5.3E-16 116.8 7.8 119 17-151 18-153 (731)
282 KOG1954 Endocytosis/signaling 99.2 4.5E-09 9.9E-14 89.4 20.4 130 18-152 57-226 (532)
283 COG1217 TypA Predicted membran 99.2 3.7E-10 7.9E-15 98.6 13.8 176 18-212 4-198 (603)
284 KOG0395 Ras-related GTPase [Ge 99.2 8E-10 1.7E-14 89.0 14.9 161 19-210 3-166 (196)
285 PRK13768 GTPase; Provisional 99.2 3.2E-10 6.9E-15 95.4 11.7 130 69-210 97-248 (253)
286 COG4108 PrfC Peptide chain rel 99.2 5.3E-10 1.2E-14 97.0 12.8 142 18-187 11-172 (528)
287 KOG0074 GTP-binding ADP-ribosy 99.2 2.4E-10 5.2E-15 83.8 8.6 163 14-206 12-176 (185)
288 KOG0081 GTPase Rab27, small G 99.1 6.9E-11 1.5E-15 88.3 5.7 160 20-208 10-180 (219)
289 KOG1707 Predicted Ras related/ 99.1 5.2E-10 1.1E-14 100.2 11.9 175 18-219 8-185 (625)
290 COG3276 SelB Selenocysteine-sp 99.1 8.4E-10 1.8E-14 96.2 12.8 159 21-208 2-161 (447)
291 KOG0071 GTP-binding ADP-ribosy 99.1 2.1E-09 4.5E-14 78.8 12.7 158 18-208 16-177 (180)
292 KOG0097 GTPase Rab14, small G 99.1 5.4E-09 1.2E-13 76.6 13.8 157 19-206 11-170 (215)
293 COG3523 IcmF Type VI protein s 99.1 2.2E-09 4.7E-14 105.3 14.9 230 20-295 126-378 (1188)
294 cd01851 GBP Guanylate-binding 99.1 2.4E-09 5.2E-14 88.4 12.8 106 18-128 6-114 (224)
295 KOG0458 Elongation factor 1 al 99.1 3.7E-09 8E-14 94.9 14.5 140 18-178 176-352 (603)
296 KOG0076 GTP-binding ADP-ribosy 99.1 4E-10 8.7E-15 85.7 7.1 167 19-211 17-189 (197)
297 COG2895 CysN GTPases - Sulfate 99.1 2.7E-09 5.8E-14 90.3 12.6 142 18-180 5-177 (431)
298 cd01858 NGP_1 NGP-1. Autoanti 99.1 4.7E-10 1E-14 87.6 7.4 56 19-79 102-157 (157)
299 COG0012 Predicted GTPase, prob 99.1 6.2E-09 1.3E-13 89.5 14.8 89 20-114 3-108 (372)
300 PF03193 DUF258: Protein of un 99.0 1.9E-10 4.1E-15 88.6 4.0 62 20-85 36-103 (161)
301 KOG0464 Elongation factor G [T 99.0 2.1E-09 4.7E-14 92.6 10.1 141 18-186 36-192 (753)
302 KOG4252 GTP-binding protein [S 99.0 3.4E-10 7.4E-15 86.3 4.7 160 17-207 18-179 (246)
303 COG5257 GCD11 Translation init 99.0 2.6E-09 5.6E-14 89.3 10.1 164 19-210 10-203 (415)
304 cd04178 Nucleostemin_like Nucl 99.0 9E-10 2E-14 87.0 7.0 56 19-79 117-172 (172)
305 COG0050 TufB GTPases - transla 99.0 9.1E-09 2E-13 85.1 12.9 171 18-210 11-202 (394)
306 TIGR00750 lao LAO/AO transport 99.0 1.3E-07 2.8E-12 81.8 20.0 110 68-209 126-238 (300)
307 PRK14845 translation initiatio 99.0 8.8E-09 1.9E-13 100.8 13.7 107 23-151 469-592 (1049)
308 KOG0083 GTPase Rab26/Rab37, sm 99.0 6.9E-10 1.5E-14 80.5 4.4 156 24-209 2-160 (192)
309 PTZ00099 rab6; Provisional 99.0 2E-08 4.2E-13 79.9 13.0 114 69-210 29-143 (176)
310 KOG0393 Ras-related small GTPa 98.9 7.5E-09 1.6E-13 82.0 9.9 163 19-207 4-177 (198)
311 KOG0447 Dynamin-like GTP bindi 98.9 4.1E-08 8.9E-13 87.6 15.5 131 18-152 307-494 (980)
312 KOG1144 Translation initiation 98.9 7.2E-09 1.6E-13 95.1 10.9 173 19-209 475-687 (1064)
313 cd01849 YlqF_related_GTPase Yl 98.9 2.6E-09 5.7E-14 83.2 6.9 57 18-79 99-155 (155)
314 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.5E-09 7.7E-14 81.1 7.4 58 19-81 83-140 (141)
315 cd01855 YqeH YqeH. YqeH is an 98.9 2.4E-09 5.2E-14 86.4 6.2 57 19-79 127-190 (190)
316 KOG0090 Signal recognition par 98.9 1.4E-08 3.1E-13 80.2 10.2 118 20-152 39-160 (238)
317 KOG0461 Selenocysteine-specifi 98.9 4.2E-08 9.2E-13 82.9 13.3 162 20-208 8-192 (522)
318 PRK09563 rbgA GTPase YlqF; Rev 98.9 9.7E-09 2.1E-13 88.1 9.7 66 18-88 120-185 (287)
319 KOG1486 GTP-binding protein DR 98.9 1.4E-08 3E-13 82.2 9.7 89 19-114 62-150 (364)
320 TIGR01425 SRP54_euk signal rec 98.9 4.3E-07 9.2E-12 81.1 19.9 123 18-152 99-254 (429)
321 KOG2486 Predicted GTPase [Gene 98.9 1.8E-08 3.9E-13 82.8 10.2 127 16-152 133-263 (320)
322 PRK12288 GTPase RsgA; Reviewed 98.9 9E-09 2E-13 90.1 8.4 62 20-85 206-273 (347)
323 KOG3883 Ras family small GTPas 98.9 4.1E-08 9E-13 73.2 10.4 123 17-152 7-133 (198)
324 PF00448 SRP54: SRP54-type pro 98.8 1E-07 2.2E-12 76.9 13.6 73 68-152 83-155 (196)
325 KOG0468 U5 snRNP-specific prot 98.8 3.1E-08 6.7E-13 90.1 10.6 117 18-150 127-262 (971)
326 TIGR03596 GTPase_YlqF ribosome 98.8 2.3E-08 4.9E-13 85.4 9.1 64 18-86 117-180 (276)
327 PF03308 ArgK: ArgK protein; 98.8 3.4E-07 7.4E-12 75.4 15.2 101 68-209 121-230 (266)
328 COG5192 BMS1 GTP-binding prote 98.8 6.6E-08 1.4E-12 86.6 11.9 123 15-163 65-188 (1077)
329 COG1162 Predicted GTPases [Gen 98.8 1.8E-08 3.9E-13 84.8 8.0 62 19-84 164-231 (301)
330 KOG0072 GTP-binding ADP-ribosy 98.8 2.3E-08 5E-13 73.7 7.3 162 18-210 17-180 (182)
331 PRK12289 GTPase RsgA; Reviewed 98.8 1E-08 2.2E-13 89.8 6.3 60 20-83 173-238 (352)
332 cd01856 YlqF YlqF. Proteins o 98.8 2E-08 4.4E-13 79.5 7.5 58 18-80 114-171 (171)
333 TIGR00157 ribosome small subun 98.8 1.3E-08 2.8E-13 85.2 6.5 61 20-85 121-187 (245)
334 PF03029 ATP_bind_1: Conserved 98.8 4.6E-09 1E-13 87.3 3.5 127 70-208 92-236 (238)
335 KOG0077 Vesicle coat complex C 98.8 8.9E-08 1.9E-12 72.5 9.9 116 18-152 19-136 (193)
336 TIGR03597 GTPase_YqeH ribosome 98.7 3.8E-08 8.3E-13 87.1 8.0 121 20-150 155-279 (360)
337 PRK10416 signal recognition pa 98.7 1.1E-06 2.4E-11 76.2 16.8 124 18-151 113-273 (318)
338 COG1703 ArgK Putative periplas 98.7 6E-07 1.3E-11 75.0 14.1 111 68-210 143-255 (323)
339 PRK00098 GTPase RsgA; Reviewed 98.7 6.1E-08 1.3E-12 83.6 8.6 60 19-82 164-229 (298)
340 COG1161 Predicted GTPases [Gen 98.7 4.7E-08 1E-12 85.0 7.8 63 19-86 132-194 (322)
341 COG1419 FlhF Flagellar GTP-bin 98.7 1.5E-07 3.2E-12 82.2 10.8 122 19-152 203-353 (407)
342 cd01854 YjeQ_engC YjeQ/EngC. 98.7 6.4E-08 1.4E-12 83.0 8.3 60 20-83 162-227 (287)
343 KOG1491 Predicted GTP-binding 98.7 5.6E-07 1.2E-11 76.2 13.5 91 18-114 19-125 (391)
344 PRK11889 flhF flagellar biosyn 98.7 5.2E-07 1.1E-11 79.1 13.7 123 18-152 240-392 (436)
345 PRK14723 flhF flagellar biosyn 98.7 7.4E-07 1.6E-11 84.6 15.8 124 19-152 185-338 (767)
346 PRK14721 flhF flagellar biosyn 98.7 3.1E-07 6.7E-12 82.0 11.7 123 17-152 189-341 (420)
347 KOG0460 Mitochondrial translat 98.6 3.5E-07 7.6E-12 77.3 11.0 173 16-210 51-246 (449)
348 KOG0467 Translation elongation 98.6 1.3E-07 2.8E-12 87.4 8.7 118 14-150 4-137 (887)
349 TIGR00092 GTP-binding protein 98.6 2E-07 4.3E-12 81.5 8.9 90 20-114 3-108 (368)
350 PRK14722 flhF flagellar biosyn 98.6 1.9E-06 4.2E-11 75.8 15.1 129 18-152 136-296 (374)
351 cd01859 MJ1464 MJ1464. This f 98.6 1.5E-07 3.3E-12 73.3 7.5 57 18-79 100-156 (156)
352 TIGR00064 ftsY signal recognit 98.6 3.7E-06 8E-11 71.4 16.1 76 67-152 153-232 (272)
353 PRK14974 cell division protein 98.6 2.2E-06 4.8E-11 74.6 15.0 73 68-152 222-294 (336)
354 KOG1673 Ras GTPases [General f 98.6 5.7E-07 1.2E-11 67.4 9.0 180 5-208 6-185 (205)
355 COG0488 Uup ATPase components 98.5 1.2E-07 2.6E-12 87.3 6.2 132 18-162 347-483 (530)
356 TIGR00073 hypB hydrogenase acc 98.5 6.1E-07 1.3E-11 73.4 9.7 25 18-42 21-45 (207)
357 COG0488 Uup ATPase components 98.5 2.5E-06 5.4E-11 78.6 14.6 32 18-49 28-59 (530)
358 TIGR00101 ureG urease accessor 98.5 1.7E-06 3.7E-11 70.1 11.7 81 105-207 114-194 (199)
359 PRK10463 hydrogenase nickel in 98.5 1.2E-07 2.6E-12 80.1 4.7 55 139-206 232-286 (290)
360 KOG1424 Predicted GTP-binding 98.5 1.8E-07 3.9E-12 83.1 5.7 60 19-83 314-373 (562)
361 PRK13796 GTPase YqeH; Provisio 98.5 2.5E-07 5.5E-12 82.0 6.5 59 19-81 160-222 (365)
362 cd03112 CobW_like The function 98.5 1.1E-06 2.4E-11 68.5 9.0 23 21-43 2-24 (158)
363 PRK12723 flagellar biosynthesi 98.5 8.8E-06 1.9E-10 72.2 15.6 124 18-152 173-327 (388)
364 PRK12726 flagellar biosynthesi 98.5 5.2E-06 1.1E-10 72.7 13.8 123 18-152 205-357 (407)
365 PRK00771 signal recognition pa 98.5 2.4E-05 5.1E-10 70.7 18.4 72 69-152 176-247 (437)
366 PRK12727 flagellar biosynthesi 98.5 7.6E-06 1.6E-10 74.6 15.3 24 18-41 349-372 (559)
367 PRK06995 flhF flagellar biosyn 98.4 6.8E-06 1.5E-10 74.7 14.6 26 18-43 255-280 (484)
368 PRK05703 flhF flagellar biosyn 98.4 2E-06 4.4E-11 77.6 11.0 122 19-152 221-372 (424)
369 KOG1487 GTP-binding protein DR 98.4 3.4E-07 7.3E-12 74.6 5.3 91 20-117 60-150 (358)
370 PRK12724 flagellar biosynthesi 98.4 1.9E-06 4.1E-11 76.5 9.4 124 19-152 223-374 (432)
371 KOG3886 GTP-binding protein [S 98.4 1.3E-06 2.7E-11 70.1 7.1 120 19-152 4-131 (295)
372 PRK06731 flhF flagellar biosyn 98.3 8E-06 1.7E-10 69.0 10.7 123 18-152 74-226 (270)
373 cd03222 ABC_RNaseL_inhibitor T 98.3 2E-05 4.2E-10 62.6 12.3 32 17-48 23-54 (177)
374 KOG2485 Conserved ATP/GTP bind 98.3 2.6E-06 5.6E-11 71.5 7.5 70 18-88 142-215 (335)
375 COG1120 FepC ABC-type cobalami 98.3 4.7E-06 1E-10 69.3 8.7 41 6-48 17-57 (258)
376 KOG0096 GTPase Ran/TC4/GSP1 (n 98.3 2.6E-06 5.7E-11 66.1 6.7 158 18-210 9-170 (216)
377 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.3E-05 2.9E-10 66.4 11.2 30 19-48 30-59 (254)
378 PRK10867 signal recognition pa 98.3 5.4E-05 1.2E-09 68.2 15.9 72 68-151 183-254 (433)
379 cd03229 ABC_Class3 This class 98.3 2.1E-05 4.5E-10 62.7 12.0 31 18-48 25-55 (178)
380 KOG3905 Dynein light intermedi 98.2 3.7E-05 7.9E-10 65.0 13.1 29 18-46 51-79 (473)
381 cd03230 ABC_DR_subfamily_A Thi 98.2 2E-05 4.3E-10 62.5 10.5 31 18-48 25-55 (173)
382 KOG1143 Predicted translation 98.2 4.4E-06 9.6E-11 71.7 6.7 141 19-181 167-340 (591)
383 COG0541 Ffh Signal recognition 98.2 0.00015 3.3E-09 64.0 16.2 73 68-152 182-254 (451)
384 cd00066 G-alpha G protein alph 98.2 1.5E-05 3.3E-10 69.4 10.0 75 66-151 158-242 (317)
385 TIGR00959 ffh signal recogniti 98.2 3.1E-05 6.8E-10 69.7 12.0 72 68-151 182-253 (428)
386 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 4E-05 8.6E-10 58.8 10.8 29 18-46 25-53 (144)
387 cd03216 ABC_Carb_Monos_I This 98.1 1.8E-05 3.9E-10 62.1 9.0 30 18-47 25-54 (163)
388 smart00275 G_alpha G protein a 98.1 2.3E-05 5.1E-10 68.8 10.5 75 66-151 181-265 (342)
389 cd03223 ABCD_peroxisomal_ALDP 98.1 2.2E-05 4.8E-10 61.7 9.4 31 18-48 26-56 (166)
390 COG5258 GTPBP1 GTPase [General 98.1 5.5E-05 1.2E-09 65.4 11.8 129 18-163 116-279 (527)
391 cd03215 ABC_Carb_Monos_II This 98.1 2E-05 4.3E-10 63.0 8.8 31 18-48 25-55 (182)
392 KOG0927 Predicted transporter 98.1 2.8E-06 6.1E-11 76.3 3.8 127 19-162 416-553 (614)
393 cd03213 ABCG_EPDR ABCG transpo 98.1 5.8E-05 1.3E-09 61.0 11.2 26 18-43 34-59 (194)
394 PRK11147 ABC transporter ATPas 98.1 0.00011 2.5E-09 70.2 14.9 31 18-48 344-374 (635)
395 COG0378 HypB Ni2+-binding GTPa 98.1 6.5E-06 1.4E-10 64.8 5.2 56 139-207 144-199 (202)
396 cd03228 ABCC_MRP_Like The MRP 98.1 1.8E-05 3.9E-10 62.6 7.8 31 18-48 27-57 (171)
397 PRK01889 GTPase RsgA; Reviewed 98.1 4.1E-06 8.8E-11 74.0 4.4 59 19-81 195-259 (356)
398 cd03115 SRP The signal recogni 98.1 8.4E-05 1.8E-09 58.8 11.6 73 68-152 82-154 (173)
399 COG1131 CcmA ABC-type multidru 98.1 5.1E-06 1.1E-10 71.5 4.8 113 19-144 31-160 (293)
400 KOG2484 GTPase [General functi 98.0 4.8E-06 1E-10 72.1 4.2 64 17-85 250-313 (435)
401 TIGR01069 mutS2 MutS2 family p 98.0 0.00018 3.9E-09 69.7 15.4 23 20-42 323-345 (771)
402 cd03246 ABCC_Protease_Secretio 98.0 3.5E-05 7.5E-10 61.1 8.2 31 18-48 27-57 (173)
403 cd03293 ABC_NrtD_SsuB_transpor 98.0 0.00013 2.9E-09 60.1 11.8 31 18-48 29-59 (220)
404 cd03114 ArgK-like The function 98.0 6.4E-05 1.4E-09 57.9 9.2 22 21-42 1-22 (148)
405 COG0552 FtsY Signal recognitio 98.0 8E-05 1.7E-09 63.6 10.3 124 17-150 137-297 (340)
406 COG3845 ABC-type uncharacteriz 98.0 4.5E-05 9.7E-10 68.1 8.9 29 20-48 31-59 (501)
407 COG1134 TagH ABC-type polysacc 98.0 0.00016 3.4E-09 59.1 11.3 31 18-48 52-82 (249)
408 cd01858 NGP_1 NGP-1. Autoanti 97.9 3.3E-05 7.1E-10 60.2 7.2 90 100-208 5-94 (157)
409 KOG0066 eIF2-interacting prote 97.9 9.1E-05 2E-09 65.3 10.4 29 20-48 614-642 (807)
410 cd03247 ABCC_cytochrome_bd The 97.9 4.3E-05 9.3E-10 60.8 7.8 31 18-48 27-57 (178)
411 PRK13543 cytochrome c biogenes 97.9 0.00019 4E-09 59.0 11.7 31 18-48 36-66 (214)
412 COG4988 CydD ABC-type transpor 97.9 4.7E-05 1E-09 69.4 8.7 31 18-48 346-376 (559)
413 cd03232 ABC_PDR_domain2 The pl 97.9 0.00014 3E-09 58.7 10.7 26 18-43 32-57 (192)
414 cd03214 ABC_Iron-Siderophores_ 97.9 0.00014 3.1E-09 58.0 10.6 30 18-47 24-53 (180)
415 PF14331 ImcF-related_N: ImcF- 97.9 0.00032 6.9E-09 59.5 13.1 174 86-297 6-193 (266)
416 KOG0466 Translation initiation 97.9 2.4E-05 5.2E-10 65.5 5.8 161 19-210 38-242 (466)
417 COG4559 ABC-type hemin transpo 97.9 1.4E-05 3E-10 63.8 4.1 45 2-48 12-56 (259)
418 cd03217 ABC_FeS_Assembly ABC-t 97.9 6.6E-05 1.4E-09 61.0 8.3 26 18-43 25-50 (200)
419 COG1116 TauB ABC-type nitrate/ 97.9 1.2E-05 2.6E-10 65.9 3.5 41 6-48 18-58 (248)
420 COG3840 ThiQ ABC-type thiamine 97.9 1.4E-05 3E-10 62.2 3.7 31 18-48 24-54 (231)
421 cd03243 ABC_MutS_homologs The 97.9 0.00014 3E-09 59.2 9.8 23 19-41 29-51 (202)
422 cd03280 ABC_MutS2 MutS2 homolo 97.8 0.00043 9.2E-09 56.2 12.3 21 20-40 29-49 (200)
423 COG0411 LivG ABC-type branched 97.8 4.1E-06 9E-11 68.1 0.4 31 18-48 29-59 (250)
424 KOG0780 Signal recognition par 97.8 5.9E-05 1.3E-09 65.3 6.8 122 18-151 100-254 (483)
425 PF00005 ABC_tran: ABC transpo 97.8 1.8E-05 3.9E-10 60.0 3.1 30 19-48 11-40 (137)
426 KOG0082 G-protein alpha subuni 97.8 0.00028 6.1E-09 61.3 10.7 86 55-152 182-277 (354)
427 PF05783 DLIC: Dynein light in 97.8 0.00026 5.5E-09 64.5 10.9 62 138-209 197-264 (472)
428 KOG0459 Polypeptide release fa 97.8 4.1E-05 8.9E-10 66.5 5.3 165 17-201 77-278 (501)
429 COG1136 SalX ABC-type antimicr 97.8 2.9E-05 6.2E-10 63.4 4.1 31 18-48 30-60 (226)
430 KOG2423 Nucleolar GTPase [Gene 97.8 2E-05 4.3E-10 68.2 3.1 61 18-84 306-367 (572)
431 PF09547 Spore_IV_A: Stage IV 97.8 0.0012 2.5E-08 58.4 14.0 28 17-44 15-42 (492)
432 cd03225 ABC_cobalt_CbiO_domain 97.7 3.2E-05 7E-10 63.3 4.2 31 18-48 26-56 (211)
433 PRK15177 Vi polysaccharide exp 97.7 3.4E-05 7.4E-10 63.3 4.1 31 18-48 12-42 (213)
434 PF13555 AAA_29: P-loop contai 97.7 3.2E-05 7E-10 49.4 3.0 20 21-40 25-44 (62)
435 cd03261 ABC_Org_Solvent_Resist 97.7 3.7E-05 8.1E-10 64.1 4.1 31 18-48 25-55 (235)
436 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 3.7E-05 8.1E-10 63.3 4.1 31 18-48 29-59 (218)
437 cd01859 MJ1464 MJ1464. This f 97.7 0.00024 5.1E-09 55.2 8.4 87 102-210 11-97 (156)
438 TIGR01166 cbiO cobalt transpor 97.7 4E-05 8.6E-10 61.7 4.1 31 18-48 17-47 (190)
439 cd03226 ABC_cobalt_CbiO_domain 97.7 3.9E-05 8.4E-10 62.6 4.0 31 18-48 25-55 (205)
440 TIGR02868 CydC thiol reductant 97.7 7.2E-05 1.6E-09 70.1 6.3 31 18-48 360-390 (529)
441 TIGR02673 FtsE cell division A 97.7 4.1E-05 8.9E-10 62.9 4.1 31 18-48 27-57 (214)
442 cd03265 ABC_DrrA DrrA is the A 97.7 4.2E-05 9.2E-10 63.1 4.2 31 18-48 25-55 (220)
443 COG1126 GlnQ ABC-type polar am 97.7 4.7E-05 1E-09 61.0 4.1 31 18-48 27-57 (240)
444 COG1122 CbiO ABC-type cobalt t 97.7 0.00053 1.2E-08 56.8 10.6 31 18-48 29-59 (235)
445 cd00267 ABC_ATPase ABC (ATP-bi 97.7 0.00028 6.1E-09 54.9 8.6 27 18-44 24-50 (157)
446 cd03259 ABC_Carb_Solutes_like 97.7 4.3E-05 9.3E-10 62.7 4.1 31 18-48 25-55 (213)
447 COG0410 LivF ABC-type branched 97.7 4.5E-05 9.8E-10 61.7 4.1 31 18-48 28-58 (237)
448 TIGR00960 3a0501s02 Type II (G 97.7 4.3E-05 9.3E-10 62.9 4.1 31 18-48 28-58 (216)
449 TIGR02211 LolD_lipo_ex lipopro 97.7 4.7E-05 1E-09 62.9 4.2 31 18-48 30-60 (221)
450 COG1618 Predicted nucleotide k 97.7 0.0025 5.3E-08 48.9 12.9 117 19-148 5-141 (179)
451 cd03262 ABC_HisP_GlnQ_permease 97.7 4.9E-05 1.1E-09 62.3 4.2 31 18-48 25-55 (213)
452 PRK13545 tagH teichoic acids e 97.7 0.00058 1.3E-08 62.8 11.2 31 18-48 49-79 (549)
453 cd03269 ABC_putative_ATPase Th 97.7 5.1E-05 1.1E-09 62.1 4.1 31 18-48 25-55 (210)
454 TIGR03608 L_ocin_972_ABC putat 97.7 4.9E-05 1.1E-09 62.0 4.0 31 18-48 23-53 (206)
455 PRK13541 cytochrome c biogenes 97.7 5.2E-05 1.1E-09 61.3 4.1 31 18-48 25-55 (195)
456 cd03264 ABC_drug_resistance_li 97.7 4.6E-05 1E-09 62.4 3.9 28 21-48 27-54 (211)
457 TIGR01189 ccmA heme ABC export 97.7 5.4E-05 1.2E-09 61.4 4.2 31 18-48 25-55 (198)
458 PRK13695 putative NTPase; Prov 97.7 0.001 2.3E-08 52.6 11.5 22 21-42 2-23 (174)
459 PF02492 cobW: CobW/HypB/UreG, 97.6 2.2E-05 4.7E-10 62.6 1.7 72 69-152 85-156 (178)
460 cd03292 ABC_FtsE_transporter F 97.6 5.2E-05 1.1E-09 62.2 4.1 30 18-47 26-55 (214)
461 cd03235 ABC_Metallic_Cations A 97.6 5.4E-05 1.2E-09 62.1 4.1 31 18-48 24-54 (213)
462 cd03257 ABC_NikE_OppD_transpor 97.6 5.5E-05 1.2E-09 62.8 4.1 31 18-48 30-60 (228)
463 PRK11248 tauB taurine transpor 97.6 5.6E-05 1.2E-09 63.9 4.2 31 18-48 26-56 (255)
464 cd03301 ABC_MalK_N The N-termi 97.6 5.6E-05 1.2E-09 62.0 4.2 31 18-48 25-55 (213)
465 cd03218 ABC_YhbG The ABC trans 97.6 5.6E-05 1.2E-09 62.9 4.2 31 18-48 25-55 (232)
466 cd03263 ABC_subfamily_A The AB 97.6 5.9E-05 1.3E-09 62.2 4.2 31 18-48 27-57 (220)
467 PRK13539 cytochrome c biogenes 97.6 6E-05 1.3E-09 61.6 4.2 31 18-48 27-57 (207)
468 cd03258 ABC_MetN_methionine_tr 97.6 6E-05 1.3E-09 62.8 4.2 31 18-48 30-60 (233)
469 PRK13540 cytochrome c biogenes 97.6 6.2E-05 1.3E-09 61.1 4.2 31 18-48 26-56 (200)
470 cd03224 ABC_TM1139_LivF_branch 97.6 6.1E-05 1.3E-09 62.2 4.2 31 18-48 25-55 (222)
471 cd03296 ABC_CysA_sulfate_impor 97.6 5.9E-05 1.3E-09 63.1 4.1 31 18-48 27-57 (239)
472 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 5.9E-05 1.3E-09 62.9 4.1 31 18-48 26-56 (236)
473 cd03231 ABC_CcmA_heme_exporter 97.6 6.4E-05 1.4E-09 61.1 4.2 31 18-48 25-55 (201)
474 KOG0446 Vacuolar sorting prote 97.6 3.8E-05 8.2E-10 72.7 3.1 129 19-152 29-214 (657)
475 cd03237 ABC_RNaseL_inhibitor_d 97.6 6.4E-05 1.4E-09 63.1 4.2 31 18-48 24-54 (246)
476 PRK13538 cytochrome c biogenes 97.6 6.8E-05 1.5E-09 61.1 4.2 31 18-48 26-56 (204)
477 PRK10895 lipopolysaccharide AB 97.6 6.4E-05 1.4E-09 62.9 4.2 31 18-48 28-58 (241)
478 cd03268 ABC_BcrA_bacitracin_re 97.6 6.6E-05 1.4E-09 61.4 4.1 31 18-48 25-55 (208)
479 TIGR02315 ABC_phnC phosphonate 97.6 6.3E-05 1.4E-09 63.0 4.1 31 18-48 27-57 (243)
480 TIGR01188 drrA daunorubicin re 97.6 6.3E-05 1.4E-09 65.2 4.1 31 18-48 18-48 (302)
481 cd03298 ABC_ThiQ_thiamine_tran 97.6 6.9E-05 1.5E-09 61.4 4.2 31 18-48 23-53 (211)
482 TIGR02203 MsbA_lipidA lipid A 97.6 0.00039 8.4E-09 65.9 9.8 31 18-48 357-387 (571)
483 KOG0927 Predicted transporter 97.6 0.00023 5.1E-09 64.3 7.7 29 17-45 99-127 (614)
484 COG4152 ABC-type uncharacteriz 97.6 0.00026 5.6E-09 57.9 7.2 31 18-48 27-57 (300)
485 cd03219 ABC_Mj1267_LivG_branch 97.6 6.5E-05 1.4E-09 62.7 4.0 31 18-48 25-55 (236)
486 PRK10584 putative ABC transpor 97.6 6.7E-05 1.5E-09 62.2 4.1 31 18-48 35-65 (228)
487 PRK10908 cell division protein 97.6 6.9E-05 1.5E-09 61.9 4.1 31 18-48 27-57 (222)
488 COG3839 MalK ABC-type sugar tr 97.6 6.5E-05 1.4E-09 65.1 4.1 30 19-48 29-58 (338)
489 cd03266 ABC_NatA_sodium_export 97.6 7.1E-05 1.5E-09 61.6 4.1 31 18-48 30-60 (218)
490 KOG4423 GTP-binding protein-li 97.6 7E-06 1.5E-10 63.6 -1.7 163 20-211 26-196 (229)
491 cd03254 ABCC_Glucan_exporter_l 97.6 7.2E-05 1.6E-09 62.1 4.2 31 18-48 28-58 (229)
492 COG1132 MdlB ABC-type multidru 97.6 0.00023 5.1E-09 67.3 8.1 123 18-143 354-489 (567)
493 cd03236 ABC_RNaseL_inhibitor_d 97.6 7.2E-05 1.6E-09 63.1 4.2 32 17-48 24-55 (255)
494 TIGR03410 urea_trans_UrtE urea 97.6 7.4E-05 1.6E-09 62.1 4.2 31 18-48 25-55 (230)
495 TIGR01184 ntrCD nitrate transp 97.6 7.5E-05 1.6E-09 62.1 4.2 31 18-48 10-40 (230)
496 cd01856 YlqF YlqF. Proteins o 97.6 0.00055 1.2E-08 54.1 9.0 93 89-209 9-101 (171)
497 PRK11629 lolD lipoprotein tran 97.6 7.2E-05 1.5E-09 62.3 4.1 31 18-48 34-64 (233)
498 PRK11174 cysteine/glutathione 97.6 0.0002 4.4E-09 68.0 7.6 30 18-48 375-404 (588)
499 PRK10247 putative ABC transpor 97.6 7.5E-05 1.6E-09 61.9 4.1 31 18-48 32-62 (225)
500 PRK11247 ssuB aliphatic sulfon 97.6 7.2E-05 1.6E-09 63.2 4.1 31 18-48 37-67 (257)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=8.3e-35 Score=238.34 Aligned_cols=204 Identities=42% Similarity=0.741 Sum_probs=171.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
++|+|+|.+|+||||++|+|+|...|.++.+..+.|..+..... .+++..++||||||+.++...+..+.+++..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 48999999999999999999999999998777788888888776 48999999999999999888888888999999988
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
..+++|++|+|++++ +++..++..++.+.+.||.++|++++||+|++|.... ..+++|+....+..++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 889999999999999 9999999999999999999999999999999998877 6699999853456799999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (301)
++.|++..........++.+|++.|..++..+++.+|.+++++.+++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999999844444556899999999999999999999999999988774
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=4.8e-33 Score=225.87 Aligned_cols=195 Identities=51% Similarity=0.855 Sum_probs=173.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... +++..+.||||||+.++......+.+++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 479999999999999999999999887776666778777776655 6889999999999999877667777888888887
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+.+++|++|+|+++. +++..+...++.+++.||..+++++++++|++|.... ..+++++.. .+..++.++..|+.+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 889999999999998 5999999999999999998888899999999999877 789999986 678899999999999
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~ 220 (301)
++.|++... ++..+.++.+|++.|..+++.+++.+|.+++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999887 7788999999999999999998888887654
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=6.7e-25 Score=180.75 Aligned_cols=177 Identities=21% Similarity=0.314 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
..|+|+|+||+|||||+|+|+|..+ +..++.+.||+.........+...+.++||||++.+ ...+.+.+.+....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 6899999999999999999999999 778888999999888888788889999999999985 55667778888888
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc-HHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
++..+|+++||+|++..+...+...++.++.. . .|+++++||+|.... .. +...++. +...
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~--~~~l~~~~~~-----~~~~------ 143 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKP--KTVLLKLIAF-----LKKL------ 143 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCc--HHHHHHHHHH-----HHhh------
Confidence 89999999999999977999999998888872 1 299999999998866 33 2232222 1111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ 222 (301)
++|....+.||..+.+++.|++.+...+++. ..+|+.++..
T Consensus 144 --~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg-~~~yp~d~it 184 (298)
T COG1159 144 --LPFKEIVPISALKGDNVDTLLEIIKEYLPEG-PWYYPEDQIT 184 (298)
T ss_pred --CCcceEEEeeccccCCHHHHHHHHHHhCCCC-CCcCChhhcc
Confidence 1344445589999999999999999999873 3456666543
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.89 E-value=7.8e-22 Score=166.25 Aligned_cols=193 Identities=22% Similarity=0.294 Sum_probs=134.2
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 13 ~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
+....+..+|+|+|.+|+||||++|+|+|..++...... +.+........ ..++..+.||||||+.+....+......
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~-s~t~~~~~~~~-~~~G~~l~VIDTPGL~d~~~~~e~~~~~ 109 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ-SEGLRPMMVSR-TRAGFTLNIIDTPGLIEGGYINDQAVNI 109 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-CcceeEEEEEE-EECCeEEEEEECCCCCchHHHHHHHHHH
Confidence 334456689999999999999999999999874433221 22222222222 3678999999999999864333332222
Q ss_pred HHHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
+..++ ...++|++|||.+++ .+++..+...++.+.+.||.++|.++++++||+|...+++.++++|+.+ ..+.++.
T Consensus 110 ik~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 110 IKRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 235799999997765 4888899999999999999999999999999999876555889999996 8888888
Q ss_pred HHHHcC-----------CceEEecCCCcccccc--------h-hHHHHHHHHHHHHHhh
Q 022188 172 ILQLCD-----------NRCVLFDNKTKDEAKG--------T-EQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 172 ~~~~~~-----------~~~~~~~~~~~~~~~~--------~-~~~~~L~~~l~~~~~~ 210 (301)
++..+. .++..+.|...+.... | .-+..|+..|..+...
T Consensus 187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~ 245 (313)
T TIGR00991 187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN 245 (313)
T ss_pred HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence 887543 2334444443332110 1 2366788887776643
No 5
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.88 E-value=4.2e-21 Score=173.94 Aligned_cols=162 Identities=21% Similarity=0.281 Sum_probs=124.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|+|...+.+.... +.|+....... .+++..+.||||||+.++.... ....++...+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~-~~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFG-MGTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQ-SKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCC-CCceEEEEEEE-EECCceEEEEECCCCCccccch-HHHHHHHHHHH
Confidence 479999999999999999999999887765433 34555443333 3678899999999999975432 22334444332
Q ss_pred cc--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc-----ccHHHHhcccCCchHH
Q 022188 99 MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPKPLK 170 (301)
Q Consensus 99 ~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-----~~~~~~~~~~~~~~l~ 170 (301)
.+ ..++|++|||++++ .+...++...++.+.+.||..+|+++|||+||+|...+++ .++++|+.+ .++.++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 22 34789999999886 2333467789999999999999999999999999886422 589999986 889999
Q ss_pred HHHHHcCCceEEec
Q 022188 171 EILQLCDNRCVLFD 184 (301)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (301)
.++..|.++...|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999998777665
No 6
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=9.7e-22 Score=150.84 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH-HHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-KCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~~~ 98 (301)
++|+++|.||+|||||+|+|+|.... ....++.|+......+. ..+..+.++|+||+++......+ +.+. .++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~-~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFK-LGDQQVELVDLPGIYSLSSKSEE--ERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEE-ETTEEEEEEE----SSSSSSSHH--HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEE-ecCceEEEEECCCcccCCCCCcH--HHHHHHHHh
Confidence 47999999999999999999999953 23345667665554444 67899999999999886543322 1222 2222
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
...+|++++|+|++ .+. .+...+..+.+. |. |+++++||+|.+...+..++ ...+-...+.
T Consensus 76 --~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~ 136 (156)
T PF02421_consen 76 --SEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGV 136 (156)
T ss_dssp --HTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS
T ss_pred --hcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCC
Confidence 46789999999998 442 223344444443 43 99999999997754221111 3445556688
Q ss_pred ceEEecCCCcccccchhHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLV 204 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l 204 (301)
++++ .+|+.+.|+++|++.|
T Consensus 137 pvi~------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 137 PVIP------VSARTGEGIDELKDAI 156 (156)
T ss_dssp -EEE------EBTTTTBTHHHHHHHH
T ss_pred CEEE------EEeCCCcCHHHHHhhC
Confidence 8887 7788889999998865
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=8.7e-21 Score=161.35 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+|+|++|+|||||+|+|+|... +..++.+.|+..........++..+.+|||||+.... ....+.+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 699999999999999999999876 3334445555544444444556679999999998742 22233344444445
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (301)
...+|++++|+|++...+.. ..++..+.. .+ .|+++|+||+|.... ..+.+.. ..+....+. .
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~~~ 140 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDFKD 140 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCCCc
Confidence 67889999999998544433 444555543 22 289999999998643 2222222 222222222 3
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~ 220 (301)
+++ .||+++.|+++|++.+...++.. ...|+.+.
T Consensus 141 v~~------iSA~~g~gi~~L~~~l~~~l~~~-~~~~~~~~ 174 (270)
T TIGR00436 141 IVP------ISALTGDNTSFLAAFIEVHLPEG-PFRYPEDY 174 (270)
T ss_pred eEE------EecCCCCCHHHHHHHHHHhCCCC-CCCCCCcc
Confidence 444 89999999999999999988763 23355444
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=3e-20 Score=160.13 Aligned_cols=174 Identities=20% Similarity=0.310 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
..|+|+|++|||||||+|+|+|... +..++.+.|+..........++..+.++||||+.+.. ....+.+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 6799999999999999999999876 3333444555544444443455789999999998743 2333444444445
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-C
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-N 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 178 (301)
+...+|++++|+|++.+++..+...+..+... + .|+++|+||+|..... ..+...+.. +....+ .
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-~----~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~~~ 146 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-K----TPVILVLNKIDLVKDK-EELLPLLEE--------LSELMDFA 146 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-C----CCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCCCC
Confidence 56788999999999966777776666666532 2 3999999999987321 223333222 222222 2
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ 219 (301)
.+++ .|++++.++++|++++...++... ..|+.+
T Consensus 147 ~i~~------iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~ 180 (292)
T PRK00089 147 EIVP------ISALKGDNVDELLDVIAKYLPEGP-PYYPED 180 (292)
T ss_pred eEEE------ecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence 3343 788889999999999999887632 345544
No 9
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.84 E-value=5.4e-20 Score=153.28 Aligned_cols=132 Identities=28% Similarity=0.341 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC---cHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKEI 93 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~~~ 93 (301)
....+|+|+|++|+|||||+|+|+|...+.... ..+.|......... +++..+++|||||+.+.... +..+...+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 456899999999999999999999998755543 23445555554433 67889999999999986421 22233333
Q ss_pred HHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..++. ..++|+++||..++ .+++..+...++.+.+.||..+|.++++|+||+|...+
T Consensus 107 ~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 33332 24689999998777 57888889999999999999999999999999998755
No 10
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=9.9e-20 Score=159.12 Aligned_cols=172 Identities=20% Similarity=0.258 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|.+|+|||||+|+|+|... +..++...|+..........++..+.+|||||+..... .+...+.+....
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~--~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~~ 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL--SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCAWS 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce--eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHHHH
Confidence 4899999999999999999999876 22333344444333333346778899999999875322 233344444444
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC--
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-- 177 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 177 (301)
++.++|++++|+|....+...+..++..+... +. |.++|+||+|+... .+.+ +...+....
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~----p~IlViNKiDl~~~---~~~~---------~~~~l~~~~~~ 190 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NI----VPIFLLNKIDIESK---YLND---------IKAFLTENHPD 190 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CC----CEEEEEEhhcCccc---cHHH---------HHHHHHhcCCC
Confidence 56788999999998877777776666666543 22 77889999997532 1221 222222222
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~ 220 (301)
..+++ +||+++.|+++|++++...++. +..+|+.++
T Consensus 191 ~~i~~------iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~ 226 (339)
T PRK15494 191 SLLFP------ISALSGKNIDGLLEYITSKAKI-SPWLYAEDD 226 (339)
T ss_pred cEEEE------EeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 23343 7889999999999999998876 334466555
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=6.1e-20 Score=159.76 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
..|+|+|.||+|||||+|+|+|... +.+...+.+|+...+....|.+..+.+|||+|+.+.. .+.+.+++......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 6799999999999999999999987 5555556566666666666889999999999998743 13344445544444
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+...+|++|||+|+..+++..+....++|+. .+. |+++|+||+|.... ++. ..++..-.-+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~-----e~~--------~~efyslG~g~ 141 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKA-----EEL--------AYEFYSLGFGE 141 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchh-----hhh--------HHHHHhcCCCC
Confidence 5567799999999998999999999888883 233 99999999996522 111 11122111133
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.++ .||..+.|+.+|++.+...+
T Consensus 142 ~~~------ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 142 PVP------ISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ceE------eehhhccCHHHHHHHHHhhc
Confidence 333 79999999999999999887
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=6e-19 Score=153.58 Aligned_cols=177 Identities=22% Similarity=0.253 Sum_probs=127.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+|+|.||+|||||+|+|+|+.. +..++.+.|+.........++++.+.+|||.|+-......+.+...-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 358999999999999999999999998 555666777777666656689999999999998764332211000000000
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+...+|++++|+|++.+++.++.+....+.+. |. ++++++||||..+.+...++++... ++..+...+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence 1123456999999999999999999988887765 44 8999999999876533455555444 555444333
Q ss_pred -CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
.+.+ ..||.++.++..|++.+........
T Consensus 325 ~a~i~------~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 325 FAPIV------FISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred CCeEE------EEEecCCCChHHHHHHHHHHHHHhc
Confidence 2333 3789999999999999988765543
No 13
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4e-18 Score=133.52 Aligned_cols=169 Identities=19% Similarity=0.219 Sum_probs=114.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc---HHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS---EFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~~ 94 (301)
...-|+++|.+|+|||||||+|+|.....-....+|.|.....+. +++ .+.+||.||++-...+. +.+...+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~---~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE---VDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE---ecC-cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 457899999999999999999999774333334556666655443 333 27899999999877654 33444455
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.++... ....++++++|+.+.+...++.+++++... +. |+++++||+|.... ......+.. +.+.+.
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~ 165 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAEELK 165 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence 555433 347899999999988999999999999875 43 89999999999875 333322222 221111
Q ss_pred H-cCCc--eEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 L-CDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
. .... +.. .|+..+.|+++|...|...+.
T Consensus 166 ~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 166 KPPPDDQWVVL------FSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCCCccceEEE------EecccccCHHHHHHHHHHHhh
Confidence 1 1111 222 344456779999988877654
No 14
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=2.8e-18 Score=135.77 Aligned_cols=163 Identities=22% Similarity=0.199 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~~~~ 98 (301)
++|+++|++|+|||||+|++++....... ....|......... ..+..+++|||||+.+...... .+.......+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHHHHHHHHH-
Confidence 47999999999999999999987652211 12223333332222 4567899999999865322111 1111111111
Q ss_pred ccCCCccEEEEEEecCCCCC---HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 99 MAKDGIHAFLVVFSVTNRFS---QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....|++++|+|++++.+ .....++..++..+.. .|+++++||+|.... ..+.. . ..+...
T Consensus 77 --~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~---~pvilv~NK~Dl~~~--~~~~~-~--------~~~~~~ 140 (168)
T cd01897 77 --AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKN---KPVIVVLNKIDLLTF--EDLSE-I--------EEEEEL 140 (168)
T ss_pred --HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCc---CCeEEEEEccccCch--hhHHH-H--------HHhhhh
Confidence 123589999999984332 2224556666554422 399999999998654 33322 1 112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+++. +|++++.|++++++++...+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEVLK------ISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCceEE------EEecccCCHHHHHHHHHHHh
Confidence 2233444 89999999999999987654
No 15
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=8.8e-18 Score=146.77 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=119.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+.+++|+|+||+|||||+|+|++... ..++..+.||+.........+|.++.++||.|+.++...-+.++ +..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iG---IeR 289 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIG---IER 289 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHH---HHH
Confidence 4568999999999999999999999998 66777788888777766668999999999999998654333333 222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
.+.....+|.+++|+|++.+.+..+...+..+ +..+|+++|.||.|+... ..... + .+. .
T Consensus 290 s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~--~~~~~---------~-~~~--~ 349 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK--IELES---------E-KLA--N 349 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc--cccch---------h-hcc--C
Confidence 23345677999999999966777776666511 122389999999998765 11110 1 000 0
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+...+. .|++++.|++.|.+.|...+...
T Consensus 350 ~~~~i~------iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 GDAIIS------ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCceEE------EEecCccCHHHHHHHHHHHHhhc
Confidence 122333 78889999999999999887654
No 16
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.80 E-value=5.4e-18 Score=133.40 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.|+|+|++|+|||||+|+|++....... ....+.|......... .. +..+.+|||||..+ +...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD-LPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE-ecCCcEEEEEECCChHH-----------HHHHHH
Confidence 6999999999999999999975421111 0112234333333333 33 67899999999532 222223
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH---
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL--- 175 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 175 (301)
..+.++|++++|+|+++.........+..+... +. .|+++++||+|+... ......... +...+..
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 345678999999999854444444444444332 32 289999999997644 222222222 3333333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+.++++ .|++.+.+++++++.+..
T Consensus 139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 ADAPIFP------VSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcEEE------EeCCCCcCHHHHHHHHhh
Confidence 1334444 788889999999988753
No 17
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.80 E-value=3.2e-18 Score=135.66 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
+|+|+|++|+|||||+|+|++.... .+. ..+.|......... .++. .+.+|||||+.+.......+...+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~-~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IAD-YPFTTLVPNLGVVR-VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH--- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccC-CCccccCCcceEEE-cCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence 4899999999999999999986541 111 11223332222222 4454 899999999864322111122222222
Q ss_pred cCCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (301)
...+|++++|+|++++ -+... ..+.+.+..........|+++|+||+|.... ....+.+ ..+....
T Consensus 76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~--------~~~~~~~~ 144 (170)
T cd01898 76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELL--------KELLKELW 144 (170)
T ss_pred -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHH--------HHHHhhCC
Confidence 2356999999999844 22222 3444555443211123489999999998655 3333322 2233332
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+..+++ +|++.+.+++++++++.+.
T Consensus 145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFP------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence 333444 7888899999999988654
No 18
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.79 E-value=5.3e-18 Score=133.51 Aligned_cols=164 Identities=21% Similarity=0.232 Sum_probs=103.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+++|++|+|||||+|+++|....... ....++...........+..+.+|||||+......... .+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~---~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGE---RMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHH---HHHHHHH
Confidence 378999999999999999999998753222 22223332222223345578899999998875332211 1222233
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 177 (301)
.....+|++++|++++.+++......+..+... +. |+++++||+|..... ..+.+.... +....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~~----~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-KT----PVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-CC----CEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence 345677999999999966566666665655543 22 899999999976321 233332222 222221
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+++. .+++.+.+++++++.|.+.
T Consensus 144 ~~~~~------~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEIFP------ISALKGENVDELLEEIVKY 167 (168)
T ss_pred CceEE------EEeccCCChHHHHHHHHhh
Confidence 23333 6777889999999988654
No 19
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=2.1e-17 Score=134.14 Aligned_cols=169 Identities=15% Similarity=0.280 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+|+|++|+|||||+|+|++...........+.|....... + +..+.+|||||+.....+... .+.+...+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~l~l~DtpG~~~~~~~~~~-~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE---V-NDKLRLVDLPGYGYAKVSKEE-KEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe---c-CCeEEEeCCCCCCCcCCCchH-HHHHHHHH
Confidence 457899999999999999999998752222222233343333221 2 467999999998764332211 11222221
Q ss_pred h---ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 98 G---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 98 ~---~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
. .....++++++|+|++.+++..+...+..+.. .+. |+++++||+|.... ......... +...+.
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~----~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~ 165 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGI----PVLIVLTKADKLKK--GERKKQLKK-----VRKALK 165 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCC----cEEEEEECcccCCH--HHHHHHHHH-----HHHHHH
Confidence 1 22345678889999886777666555555543 232 89999999998755 333332222 333333
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
....++++ .|+.++.+++++++.+...+.
T Consensus 166 ~~~~~~~~------~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 166 FGDDEVIL------FSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred hcCCceEE------EEcCCCCCHHHHHHHHHHHhc
Confidence 22334444 788888999999999987764
No 20
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=1.5e-18 Score=146.80 Aligned_cols=213 Identities=17% Similarity=0.211 Sum_probs=128.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC---CCCccc-------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 21 TVVLLGRTGNGKSATGNSILG---RKAFKA-------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g---~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
+|+|+|++|+|||||+++|+. ...... .....+.|.......+. |.+..+++|||||..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence 489999999999999999963 211000 00122455555555554 78899999999997652
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 164 (301)
..+...++ ..+|++++|+|+..+....+...+..+... +. |+++++||+|.... ..+..+.
T Consensus 78 -----~~~~~~~l----~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a---~~~~~~~-- 138 (270)
T cd01886 78 -----TIEVERSL----RVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA---DFFRVVE-- 138 (270)
T ss_pred -----HHHHHHHH----HHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHHHHH--
Confidence 12333333 455999999999877877777777776543 33 89999999997644 2222222
Q ss_pred CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc---CCC-----CCchHHHHHHHHHHHhHHHHHH
Q 022188 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN---GGQ-----PYTDELKRGATELRDKKAEVDS 236 (301)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~ 236 (301)
.+...++...++.. .+.++. .++..+++.+......+ .+. ..+.++...+++. +...++.
T Consensus 139 ------~l~~~l~~~~~~~~--~Pisa~--~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~--r~~l~e~ 206 (270)
T cd01886 139 ------QIREKLGANPVPLQ--LPIGEE--DDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA--REELIET 206 (270)
T ss_pred ------HHHHHhCCCceEEE--eccccC--CCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH--HHHHHHH
Confidence 23333343333322 123322 22233333332221111 011 2455666666665 5556788
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMV 267 (301)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 267 (301)
+.+.+++.++++.++.+...++..+.+++.+
T Consensus 207 vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 207 LAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred HhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 8899999999998877666655555555543
No 21
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2e-17 Score=150.44 Aligned_cols=174 Identities=23% Similarity=0.251 Sum_probs=112.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||+|+|++....... ....|+..........++..+.+|||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~--~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS--DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec--CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4589999999999999999999988753332 22333333333223367888999999998764433222211111111
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (301)
..+...+|++++|+|++.+++..+...+..+.+. +. |+++++||+|.... ....+.... +...+...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~~----~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-GR----ALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 1234567999999999988888887776666543 33 89999999998744 333333222 33222211
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
..+++ ..||+++.++.++++.+.......
T Consensus 318 ~~~i~------~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 318 YAPIV------FISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 12333 488999999999999988776543
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1.6e-17 Score=144.32 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=105.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.|+|+|.+|||||||+|+|++... . .+..+ .|.......+...++..++++||||+.........+...+.+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~--~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie- 235 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP--K-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE- 235 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC--c-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh-
Confidence 689999999999999999998653 2 22333 344433333332256789999999997644333334555555443
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.++++++|+|+++.-+..+ ..+...+......-..+|+++|+||+|+... ....... +.......+.
T Consensus 236 ---~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~~ 303 (335)
T PRK12299 236 ---RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALGG 303 (335)
T ss_pred ---hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcCC
Confidence 4599999999984333333 3344445443211123499999999998644 2221110 1122233334
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++ +||.++.++++|++++...+..
T Consensus 304 ~i~~------iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFL------ISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHHHh
Confidence 4555 7888999999999999887654
No 23
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=1.8e-17 Score=150.59 Aligned_cols=175 Identities=24% Similarity=0.272 Sum_probs=112.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+++|++|+|||||+|+|++...... ...+.|+..........++..+.+|||||+.+.......+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~--~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV--SDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec--CCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 347899999999999999999998764322 222333333222223357778999999998765432222111111111
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..++..+|++++|+|+.++++..+...+..+.+. +. |+++++||+|+... ....+++... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-GK----ALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-CC----cEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 1235677999999999988888887776666543 32 89999999998722 1333333332 332222222
Q ss_pred -CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+++ .+||+++.++.++++++.......
T Consensus 318 ~~~vi------~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 318 FAPIV------FISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCceE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2334 389999999999999998876543
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=1.2e-17 Score=147.87 Aligned_cols=176 Identities=20% Similarity=0.177 Sum_probs=110.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.|+|||.+|||||||+|+|++... ..+..+.||........... ...++++||||+.........+...+.+.+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i-- 235 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL-- 235 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH--
Confidence 699999999999999999998764 23444445544333333334 457999999999874332233444555444
Q ss_pred cCCCccEEEEEEecCC---CCC-HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 100 AKDGIHAFLVVFSVTN---RFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~---~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++++++|+|++. +-. .....+++.+......-..+|+++|+||+|.... ..+.+.+. .+...
T Consensus 236 --~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~~ 303 (390)
T PRK12298 236 --ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVEA 303 (390)
T ss_pred --HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHHH
Confidence 45599999999871 111 1223444444443111123499999999998644 33333322 23232
Q ss_pred cC--CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188 176 CD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (301)
Q Consensus 176 ~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~ 220 (301)
.+ ..+++ .||+++.++++|++.|...++.. ...|+.+.
T Consensus 304 ~~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~ 343 (390)
T PRK12298 304 LGWEGPVYL------ISAASGLGVKELCWDLMTFIEEN-PREEAEEA 343 (390)
T ss_pred hCCCCCEEE------EECCCCcCHHHHHHHHHHHhhhC-cccCCccc
Confidence 22 23444 78888999999999999988763 33355444
No 25
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=1.1e-17 Score=132.62 Aligned_cols=171 Identities=22% Similarity=0.259 Sum_probs=101.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+++|++|+|||||+|+|++........ ..+.+....... ...++..+.+|||||+.+.......+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVP-FEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeE-EEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999876432222 122222222222 22567788999999987653211111110001111
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-C
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 177 (301)
..+.++|++++|+|+.++.+......+..+... + .|+++++||+|+........+..... +...+... .
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 234577999999999877766555554444332 2 28999999999865411122222222 22222211 1
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.++++ .|++.+.++.++++.+...
T Consensus 150 ~~~~~------~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVF------ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEE------EeccCCCCHHHHHHHHHHh
Confidence 23333 7888899999999887653
No 26
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.78 E-value=1.2e-17 Score=133.54 Aligned_cols=157 Identities=17% Similarity=0.254 Sum_probs=97.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH--
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV-- 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-- 94 (301)
....+|+|+|++|+|||||+|+|++...........+.|.....+. .+ ..+.+|||||+......... ...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~liDtpG~~~~~~~~~~-~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE---VN-DGFRLVDLPGYGYAKVSKEE-KEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE---eC-CcEEEEeCCCCccccCChhH-HHHHHHH
Confidence 3458999999999999999999998752111112233444443332 22 46899999998765432211 11222
Q ss_pred --HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 95 --KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 95 --~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
.++. ....++++++|+|++.+++..+...+..+... + .|+++++||+|.... ......... ++..
T Consensus 91 ~~~~l~-~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~-----i~~~ 157 (179)
T TIGR03598 91 IEEYLE-KRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK-----IKKA 157 (179)
T ss_pred HHHHHH-hChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence 2222 23456899999999978888887777666542 3 289999999998754 344444443 4444
Q ss_pred HHHcC--CceEEecCCCcccccchhHH
Q 022188 173 LQLCD--NRCVLFDNKTKDEAKGTEQV 197 (301)
Q Consensus 173 ~~~~~--~~~~~~~~~~~~~~~~~~~~ 197 (301)
+...+ .++++ +|++++.|+
T Consensus 158 l~~~~~~~~v~~------~Sa~~g~gi 178 (179)
T TIGR03598 158 LKKDADDPSVQL------FSSLKKTGI 178 (179)
T ss_pred HhhccCCCceEE------EECCCCCCC
Confidence 44332 24555 666666554
No 27
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=1.2e-17 Score=130.28 Aligned_cols=155 Identities=23% Similarity=0.239 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|++|+|||||+|++++........ ..+.+......... +.+..+.+|||||+.+..... ..........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEI---EKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchH---HHHHHHHHHH
Confidence 689999999999999999999876422221 22333333333333 567789999999988754321 1111122223
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
.+..+|++++|+|++.+.+..+...+.. ..+ .|+++++||+|.... ... .....+.+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence 3567799999999997666666554433 222 299999999998754 111 11222344
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
++. .|+.++.++++|+++|...+
T Consensus 134 ~~~------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIA------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEE------EECCCCCCHHHHHHHHHHhh
Confidence 555 67778899999999987643
No 28
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.78 E-value=4.2e-18 Score=126.31 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=78.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+|+|.+|+|||||+|+|++......+.. .+.|... .+.....++..+.++||||+.+........ +.+..++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 699999999999999999999765333332 3444444 333333688888999999998854332211 2233333333
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
..+|+++||+++..+....+...++.++ .+ .|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 6779999999987544445566666663 22 299999998
No 29
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=6.1e-18 Score=132.06 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=100.2
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 022188 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (301)
Q Consensus 23 ~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
+++|++|+|||||+|+|++........ ..+.|........ ...+..+.+|||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGEA-EWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEEE-EECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999876422221 2233333333333 35678899999999987432 222223333333445
Q ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-ceE
Q 022188 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-RCV 181 (301)
Q Consensus 103 ~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 181 (301)
.+|++++|+|+.++.+..+...++.++.. + .|+++++||+|.... .... ..+...+. +++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~~------------~~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDEA------------AEFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHHH------------HHHHhcCCCCeE
Confidence 67999999999866766666666666543 3 299999999998654 2110 11112232 333
Q ss_pred EecCCCcccccchhHHHHHHHHHHHH
Q 022188 182 LFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
. .|++++.+++++++++.+.
T Consensus 137 ~------~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 P------ISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred E------EecccCCCHHHHHHHHHhh
Confidence 3 7888889999999998653
No 30
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=4.7e-17 Score=148.80 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=110.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||+|+|++....... ...+.|....... ..+++..+.+|||||+....... ...+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~-~~~~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSL-IELGGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEE-EEECCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 4589999999999999999999998752221 1223333322222 33678889999999985432211 111222222
Q ss_pred h--ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 G--MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~--~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
. .+...+|++++|+|++.+.+..+...+..+... + .|+++|+||+|+... ......... +...+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~ 353 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ 353 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence 1 235678999999999988888887766665442 2 299999999998643 222111111 1111111
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (301)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 214 (301)
. ..+++ .+||+++.++++++..+...+......
T Consensus 354 ~~~~~~~------~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 354 VPWAPRV------NISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred CCCCCEE------EEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 1 12333 389999999999999999887654433
No 31
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=6.2e-17 Score=146.57 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+.+|+++|++|+|||||+|+|++........ ..+.|.......+. +++..+.+|||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEHIN-LDGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEEEE-ECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 34789999999999999999999876422211 12333333223333 678899999999987632 12111111112
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
...+..+|++++|+|++++.+..+...+.. . . . .|+++|+||+|+... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~---~-~-~--~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE---L-K-D--KPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh---c-C-C--CCcEEEEEhhhcccc--chhh---------------hccC
Confidence 224567799999999986666555443332 1 1 2 299999999997643 1111 1112
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++. .|++++.|+++|++++...+..
T Consensus 345 ~~~i~------iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIR------ISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEE------EEeeCCCCHHHHHHHHHHHHhh
Confidence 23333 7889999999999999988754
No 32
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=2.8e-17 Score=134.33 Aligned_cols=164 Identities=26% Similarity=0.246 Sum_probs=99.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
++..+|+|+|++|||||||+|+|++........ ...|...........+...+.+|||||+.+... ....+.+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 345799999999999999999999976432221 122322222223322334899999999865322 1222222222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+ ..+..+|++++|+|++++.+.... .+...+......+ .|+++|+||+|.... .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 234577999999999855544443 3444554432222 389999999998654 2221 11111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
...+++. +|++.+.|+.+++++|...
T Consensus 178 ~~~~~~~------~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAVF------ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceEE------EEcCCCCCHHHHHHHHHhh
Confidence 1233444 7888899999999988653
No 33
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.77 E-value=6.3e-17 Score=147.25 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~ 97 (301)
.+|+++|.||+||||++|+|+|..+ .....++.|+........ ..+..+.++|.||.++.... ++.+.+++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l--- 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSEDEKVARDFL--- 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCchHHHHHHHH---
Confidence 5699999999999999999999987 444567788877766655 67888999999999986543 333333322
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
....+|+++.|+|++ .+...-.-.++.+. +|. |+++++|++|..+..+..++ ...+-+..|
T Consensus 78 --l~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LG 138 (653)
T COG0370 78 --LEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLG 138 (653)
T ss_pred --hcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhC
Confidence 256889999999998 55444444444332 243 89999999998765222222 345556678
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC---CCCchHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG---QPYTDELKRGATE 226 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~---~~~~~~~~~~~~~ 226 (301)
-++.+ .+|.++.|+++++..+......+.. ..|.+++.+..++
T Consensus 139 vPVv~------tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ie~~i~~ 184 (653)
T COG0370 139 VPVVP------TVAKRGEGLEELKRAIIELAESKTTPREVDYGEEIEEEIKE 184 (653)
T ss_pred CCEEE------EEeecCCCHHHHHHHHHHhccccccccccccchHHHHHHHH
Confidence 89888 8888999999999999887655433 1255555444443
No 34
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.76 E-value=5.7e-18 Score=136.54 Aligned_cols=162 Identities=20% Similarity=0.328 Sum_probs=110.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~ 80 (301)
+.++|+++|+.|+|||||+++|++....... ....+.|......... ...+..++++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3589999999999999999999855421100 0012344444444333 3678899999999954
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 160 (301)
+ ...++... ...+|++++|+|+..++.......+..+... +. |+++++||+|.. . ..+.+.
T Consensus 82 ~-------f~~~~~~~----~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~ 142 (188)
T PF00009_consen 82 D-------FIKEMIRG----LRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEI 142 (188)
T ss_dssp H-------HHHHHHHH----HTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHH
T ss_pred c-------eeecccce----ecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHH
Confidence 3 22333333 4456999999999988888888888887654 33 899999999987 2 344444
Q ss_pred hcccCCchHH-HHHHHcCC------ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 161 LGHECPKPLK-EILQLCDN------RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 161 ~~~~~~~~l~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.+ +. .++...+. ++++ .|+.++.|+..|++.+...+|
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~------~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIP------ISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEE------EBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHhccccccCccccceEEE------EecCCCCCHHHHHHHHHHhCc
Confidence 444 33 34443332 3444 788889999999999988765
No 35
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=2.3e-17 Score=132.86 Aligned_cols=165 Identities=21% Similarity=0.228 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (301)
+|+|+|.+|+|||||+|+|++......... ..+.+......... +.+..+.+|||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHH----
Confidence 489999999999999999998765332211 01223333223222 45678999999997642
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (301)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~ 166 (301)
...... ++..+|++++|+|+..+........+..+.. .+ .|+++++||+|.... ..+......
T Consensus 76 ---~~~~~~----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 ---SSEVIR----GLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ---HHHHHH----HHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence 112222 2346699999999986666666666665554 22 299999999998754 333333332
Q ss_pred chHHHHHHHcCCc-----e---EEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 167 KPLKEILQLCDNR-----C---VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 167 ~~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+...+...+.. . ....+..+.|++.+.++.+++.++...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 33333322210 0 00111233788889999999999987764
No 36
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2e-17 Score=134.81 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=117.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+.+|+|+|.||+|||||||+|++....+. +..+.++....+....+++..+++|||||+++....+.+..+-+...
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~- 114 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY- 114 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH-
Confidence 347888999999999999999995443222 11222333222223336678999999999999766555444444444
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC----------ccccHHHHhcccCCc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPK 167 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----------~~~~~~~~~~~~~~~ 167 (301)
.+..|.+++++++.+|.-..+...++-+.-.... +++++++|.+|...+ +...+.+++.. .-.
T Consensus 115 ---l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~~ 187 (296)
T COG3596 115 ---LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KAE 187 (296)
T ss_pred ---hhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HHH
Confidence 4556999999999988777776666655544332 389999999998754 23455555553 222
Q ss_pred hHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (301)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 214 (301)
.+.+++.. ..+....+.+...+++.|...+...++.+...
T Consensus 188 ~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 188 ALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred HHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 23333332 33333345667789999999999888764433
No 37
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=5.5e-17 Score=135.33 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=94.3
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHH
Q 022188 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVG 90 (301)
Q Consensus 12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~ 90 (301)
+++-+...++|+|.|+||+|||||+++|++..+ .. .+.+.|++.-..++...++..+++|||||+.|-.... ..+.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--Ev-A~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EV-APYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--cc-CCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence 455566678999999999999999999999876 33 3445555544444454778899999999999854321 2233
Q ss_pred HHHHHHHhccCCCccEEEEEEecC--CCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 91 KEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
.+...++. .-.++++|++|++ .+++-++ ...++.++..|.. |+++|+||+|..+.
T Consensus 238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~ 295 (346)
T COG1084 238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence 33333332 2237899999998 4666665 5688888888874 89999999997755
No 38
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=4.4e-17 Score=141.48 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
-.|+|+|.+|||||||+|+|++... .....+..|.......+. .++ ..++++||||+.........+...+.+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~-~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVR-VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEE-eCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 3689999999999999999998653 111112233333333333 344 789999999997643333334455555443
Q ss_pred ccCCCccEEEEEEecCCC---CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 99 MAKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+++++++|+|+++. -...+ ..+.+.+......-..+|+++|+||+|+... ..+.+.. +.+..
T Consensus 235 ----rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~--------~~l~~ 300 (329)
T TIGR02729 235 ----RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELL--------KELKK 300 (329)
T ss_pred ----hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHH--------HHHHH
Confidence 45999999999832 11122 2333344433111123499999999998654 3333222 22333
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+..+++ +|++++.++++|++++...+
T Consensus 301 ~~~~~vi~------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 301 ALGKPVFP------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred HcCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence 33444554 78888999999999987654
No 39
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=2.6e-17 Score=134.20 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEee--------------------------CC----
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLK--------------------------DG---- 68 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (301)
.+|+++|++|+|||||+.+|++... ........+.|.......+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3699999999999999999987621 2122222233333332222210 02
Q ss_pred --eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 69 --QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 69 --~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
..+.+|||||.. .+...+......+|++++|+|++.+ ........+..+.. .+. .|+++++|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 678999999932 2333333334567999999999843 33444455555533 232 27999999
Q ss_pred CCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
|+|+... ..+...+.. ++..+... +..+++ .|++++.++++|++++...++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~~~~i~~------vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAENAPIIP------ISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccCCCcEEE------EeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 333333333 33333321 223344 7888999999999999887654
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=4.2e-17 Score=148.17 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=110.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+|+|++|+|||||+|+|++....... ...+.|........ .+++..+.+|||||+... ...+.+.+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~t~d~~~~~~-~~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVS-DTPGVTRDRKYGDA-EWGGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceec-CCCCcccCceEEEE-EECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 4899999999999999999987642111 12344444444433 378889999999998642 223334444444445
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (301)
...+|++++|+|+..+++..+....+++++. +. |+++|+||+|.... ... ..++ ...+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~~----piilVvNK~D~~~~--~~~-----------~~~~-~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-GK----PVILVANKIDGKKE--DAV-----------AAEF-YSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-CC----CEEEEEECccCCcc--ccc-----------HHHH-HhcCCCC
Confidence 6778999999999988888888888887763 33 89999999997644 110 1111 12232 3
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+++ .|+..+.++.+|++.+...++.
T Consensus 137 ~~~------vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PIP------ISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eEE------EeCCcCCChHHHHHHHHHhcCc
Confidence 444 7888899999999998877643
No 41
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.76 E-value=2.5e-16 Score=150.13 Aligned_cols=181 Identities=17% Similarity=0.162 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||+|+|+|.... .+ ...+.|+......+ .+++..+.+|||||.++..... ....+.+...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~-vg-n~pGvTve~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~- 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR-VG-NWAGVTVERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCceEeeEEEEE-EcCceEEEEEECCCccccccccccccHHHHHHHH-
Confidence 68999999999999999999998762 22 23455655444433 3677899999999998764321 1122222221
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
......+|++++|+|++ ..... ..+...+.+. +. |+++++||+|..+. ..+... ++.+.+..+
T Consensus 80 ~l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-gi----PvIvVlNK~Dl~~~--~~i~id--------~~~L~~~LG 142 (772)
T PRK09554 80 YILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-GI----PCIVALNMLDIAEK--QNIRID--------IDALSARLG 142 (772)
T ss_pred HHhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-CC----CEEEEEEchhhhhc--cCcHHH--------HHHHHHHhC
Confidence 11245789999999998 33322 2333344332 32 99999999997644 222221 334445567
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC--CCCCchHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKRGATEL 227 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 227 (301)
.++++ .+++.+.|++++.+.+........ ...|++++.+..++.
T Consensus 143 ~pVvp------iSA~~g~GIdeL~~~I~~~~~~~~~~~~~yp~~le~~I~~l 188 (772)
T PRK09554 143 CPVIP------LVSTRGRGIEALKLAIDRHQANENVELVHYPQPLLNEADSL 188 (772)
T ss_pred CCEEE------EEeecCCCHHHHHHHHHHhhhccCCcccCCCHHHHHHHHHH
Confidence 77776 778888999999999987654211 123666655544443
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=6.9e-17 Score=127.49 Aligned_cols=159 Identities=16% Similarity=0.141 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++........+ ..+......... .++ ..+.+|||||... +....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~~-----------~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVF-RNDKRVKLQIWDTAGQER-----------YRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHH
Confidence 5899999999999999999998765222111 111111111222 233 4689999999433 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...++++|++++|+|.+++-+... ..++..+....... .|++++.||+|+........++ ...+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence 344678899999999984433222 33444554433222 3899999999976441011111 22344444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..++. +|++++.|+.+|++++...+.
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFEFFE------ASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 545555 788899999999999877653
No 43
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=6.4e-17 Score=141.69 Aligned_cols=162 Identities=22% Similarity=0.170 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|+|++...+.+. ..+.|.......+...++..+.+|||||+... .+. ...+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~-~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPH-ELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCccccc-CCH-HHHHHHHHHH
Confidence 3478999999999999999999998753222 12333333333334336778999999998542 122 2222232222
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+..+|++++|+|++++.+.... .+...+... +. ...|+++|+||+|.... ..+.. ... .
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~-~ 325 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEE-G 325 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHh-C
Confidence 235677999999999866554443 233444443 21 12399999999997643 22211 111 0
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..+++ .+|++++.|+++|++.|...
T Consensus 326 ~~~~i------~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAV------FVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEE------EEEccCCCCHHHHHHHHHhh
Confidence 11233 37899999999999998653
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.75 E-value=1.4e-16 Score=126.00 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=98.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|++|+|||||++++++...........+. ......+. .++ ..+.+|||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~-~~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIE-LDGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEE-ECCEEEEEEEEeCCchHH-----------HHHH
Confidence 378999999999999999999987642222111111 11111222 333 3678999999433 1122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....+..+|++++|+|++++-+-.. ..++..+......+. |++++.||+|+.+......++ ...+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDV--ERMLVGNKCDMEEKRVVSKEE---------GEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence 2234567899999999985433333 334444444332233 999999999986431111111 2334444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+..++. +|++++.++.+++..+.+.+
T Consensus 138 ~~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 138 YGIKFLE------TSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4555555 78888999999999987765
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=6.5e-17 Score=127.66 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.+|+++|++|+|||||+|++++.......... ............ .....+.+|||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPT--IGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 37999999999999999999988753322111 111111111221 1234778999999533 122223
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc---cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..++++|++++|+|++++-+-.. ..++..+...... ....|+++|.||+|.........++ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 34678899999999985433222 3455555544331 1224999999999976320011111 122333
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+.+++. .|++++.++.++++++.+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 34445555 78888999999999987643
No 46
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=1.3e-16 Score=125.46 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|++|+|||||+|++++...........+.+.......+. .....+.+|||||... +......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQER-----------YRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHH-----------HHHHHHH
Confidence 689999999999999999999887633221111111111111111 1234678999999322 2222223
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.+.++|++++|+|+++.-+-.. ..++..+........ |++++.||+|..........+ ...+....+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~ 138 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNI--IIALVGNKADLESKRQVSTEE---------AQEYADENGL 138 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECccccccCcCCHHH---------HHHHHHHcCC
Confidence 4567899999999983322222 345555555533223 899999999976331011111 2334444455
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+++ .|++++.++.++++++...+
T Consensus 139 ~~~~------~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFE------TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEE------EECCCCCCHHHHHHHHHHHh
Confidence 5555 78888999999999987654
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=7.5e-17 Score=147.47 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=107.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|.+|+|||||+|+|++....... ...+.|....... ..+++..+.+|||||+.... ..+...+.....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~-~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~ 112 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYD-AEWNGRRFTVVDTGGWEPDA---KGLQASVAEQAE 112 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEE-EEECCcEEEEEeCCCcCCcc---hhHHHHHHHHHH
Confidence 468999999999999999999987642222 2334444443333 34678889999999986421 122333444344
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.++..+|++|+|+|++++.+..+..+...+... + .|+++|+||+|..... ... ..+. ..+.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~~-~~~------------~~~~-~~g~ 173 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERGE-ADA------------AALW-SLGL 173 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCccc-hhh------------HHHH-hcCC
Confidence 455677999999999977777777777777642 2 2999999999975330 001 1111 1121
Q ss_pred -ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+ .+||.++.|+++|++++...++.
T Consensus 174 ~~~~------~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 174 GEPH------PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCeE------EEEcCCCCCcHHHHHHHHhhccc
Confidence 122 47889999999999999877644
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=6.7e-17 Score=127.04 Aligned_cols=156 Identities=18% Similarity=0.097 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++++....+......+.+.. ..... .++ ..+.+|||||... +....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAK-FEGKTILVDFWDTAGQER-----------FQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEE-ECCEEEEEEEEeCCCchh-----------hhhhh
Confidence 36999999999999999999876542221111111111 11111 233 4678999999543 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++.++|++++|+|++++.+... ..++..+..... + .|++++.||+|+... ..+. ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~~ 131 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS----VTQK--------KFNFAEKH 131 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh----HHHH--------HHHHHHHc
Confidence 334678899999999985544333 345566655432 2 399999999996422 1111 11222333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+.+++. +|++++.+++++++.+.+.+..
T Consensus 132 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 132 NLPLYY------VSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 444444 7888999999999998766543
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=1.7e-16 Score=125.65 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||++++++...........+.+.. ...+. .++ ..+.+|||||... +....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMIT-IDGKQIKLQIWDTAGQES-----------FRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEE-ECCEEEEEEEEECCCcHH-----------HHHHH
Confidence 78999999999999999999987652222221122211 11122 233 4689999999322 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..+|++++|+|++++-+-.. ..++..++....... |++++.||.|.........++ ...+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNM--TIMLIGNKCDLESRREVSYEE---------GEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 334567899999999984333332 234444444322223 899999999976431111111 23334444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+..++. .|+..+.++++++.++...+
T Consensus 140 ~~~~~e------~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 140 GLIFME------TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 555554 78888899999998887665
No 50
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.74 E-value=1.1e-16 Score=126.48 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.+|+++|++|+|||||++++.+....... ..|..... .... .++ ..+.+|||||... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHH
Confidence 68999999999999999999977542221 22222111 1112 333 3678999999432 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.....++++|++++|+|++++-+-.. ..++..+....... .|++++.||+|+... ..+.. .....+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~-------~~~~~~~~ 135 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY-------EEAKQFAD 135 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH-------HHHHHHHH
Confidence 23334678899999999985433333 23444443332222 389999999997644 11110 01233344
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+..++. +|++++.|+.+++..+...+
T Consensus 136 ~~~~~~~e------~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLLFLE------CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HcCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44455555 78889999999998876544
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=1.8e-16 Score=125.12 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.++|+|+|++|+|||||++++.+......... ..+.......+. .++ ..+.+|||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGVDFTMKTLE-IEGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccceEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHH
Confidence 47899999999999999999987654222111 111222222222 344 3679999999322 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....++.+|++++|+|++++-+-.. ..++..+........ |+++|.||+|+.........+ ...+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNV--VLLLIGNKCDLEEQREVLFEE---------ACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCC--cEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 2334567899999999985433333 345555554322233 899999999976441111111 2334444
Q ss_pred cCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+. .+++ +|++++.+++++++.+.+.
T Consensus 138 ~~~~~~~e------~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 138 NGMLAVLE------TSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cCCcEEEE------EECCCCCCHHHHHHHHHHh
Confidence 343 2343 7888999999999988653
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=1.4e-16 Score=125.17 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||++++++......... ..+......... .++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQH--TIGVEFGSKIIR-VGGKRVKLQIWDTAGQER-----------FRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeeEEEEEEE-ECCEEEEEEEEECcchHH-----------HHHhH
Confidence 3799999999999999999997765222211 111111111122 223 4678999999533 11122
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...++.+|++++|+|++++.+... ..++..+......+. |++++.||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNI--VVILVGNKSDLADQREVTFLE---------ASRFAQEN 135 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcchhccCCHHH---------HHHHHHHc
Confidence 233567899999999985444333 334444444433333 999999999976431011111 23344444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+..++. .|++++.++.++++++.+
T Consensus 136 ~~~~~~------~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFLE------TSALTGENVEEAFLKCAR 159 (161)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHH
Confidence 555555 788889999999998865
No 53
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.9e-16 Score=141.01 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
.|+|+|.+|||||||+|+|++... .....+..|.......+...++..++++||||+.........+...+.+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie-- 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE-- 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence 799999999999999999998764 2222223344443333332236789999999997633322334445544443
Q ss_pred CCCccEEEEEEecCCC---CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 101 KDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
+++++++|+|+++. -...+ ..+...|......-..+|.++|+||+|+... . +. +..+....
T Consensus 236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~---e~--------l~~l~~~l 300 (424)
T PRK12297 236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--E---EN--------LEEFKEKL 300 (424)
T ss_pred --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--H---HH--------HHHHHHHh
Confidence 45999999999732 11122 3344455443221123599999999996322 1 11 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+..+++ +|+.++.++++|++++...+...
T Consensus 301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 GPKVFP------ISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 334444 78888999999999999887654
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.4e-16 Score=128.85 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|.+|+|||||++++++........ ..|...... .....++ ..+.||||||-.. +...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 66 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNF---IATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSV 66 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCc---CCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHh
Confidence 369999999999999999998766422111 112111111 1112333 4678999999322 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....+..+|++++|+|++++-+... ..++..+.+...... |++++.||+|+......... ....+...
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~ 135 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDV--VIMLLGNKADMSGERVVKRE---------DGERLAKE 135 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEEcccchhccccCHH---------HHHHHHHH
Confidence 2334677899999999985433332 345555655543333 99999999997533101111 12334444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+.+++. +|++++.++++|+.++...+...
T Consensus 136 ~~~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 136 YGVPFME------TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 4555555 78889999999999998877653
No 55
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=1.7e-17 Score=141.21 Aligned_cols=212 Identities=17% Similarity=0.208 Sum_probs=123.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCC--------------CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~--~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
+|+|+|++|+|||||+|+|++..... .+... .+.+.......+. +++..+++|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHH--
Confidence 48999999999999999997532110 11000 1222222333333 67889999999997542
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 164 (301)
..+...++ ..+|++++|+|++.+........++.+... +. |.++++||+|.... ...+.+.
T Consensus 78 -----~~~~~~~l----~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~~----p~iivvNK~D~~~~---~~~~~~~-- 138 (268)
T cd04170 78 -----VGETRAAL----RAADAALVVVSAQSGVEVGTEKLWEFADEA-GI----PRIIFINKMDRERA---DFDKTLA-- 138 (268)
T ss_pred -----HHHHHHHH----HHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCccCCC---CHHHHHH--
Confidence 12333343 355999999999966666666666655432 33 89999999997644 2333333
Q ss_pred CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc-CC-----CCCchHHHHHHHHHHHhHHHHHHHH
Q 022188 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN-GG-----QPYTDELKRGATELRDKKAEVDSLK 238 (301)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (301)
.+...++.+++++.-+. ..+.++..+++.+......+ .+ ...+.++...+++. +...++.+.
T Consensus 139 ------~l~~~~~~~~~~~~ip~----~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~l~e~~a 206 (268)
T cd04170 139 ------ALQEAFGRPVVPLQLPI----GEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA 206 (268)
T ss_pred ------HHHHHhCCCeEEEEecc----cCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHH--HHHHHHHHh
Confidence 33344465655543221 12344444444443322111 11 12344555555554 555677788
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188 239 EYSKREISKLMGQMQESYEDRIKRMAEM 266 (301)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (301)
+.+++.++++.++.+...++..+.+++.
T Consensus 207 ~~dd~l~e~yl~~~~~~~~~l~~~l~~~ 234 (268)
T cd04170 207 ETDDELMEKYLEGGELTEEELHAGLRRA 234 (268)
T ss_pred hCCHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 8888899988876655544444444443
No 56
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=1.8e-16 Score=124.49 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+++|++|+|||||+|++++....... ....+......... .++ ..+.+|||||... ......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMY-LEDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 7999999999999999999988763321 12222222222222 334 3589999999432 122223
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+..+|++++|+|++++-+... ..++..+....+.+ .|+++++||+|.........++ ...+....+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence 33567799999999985433333 34444444443322 3999999999985331111111 222333344
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..++. .|+.++.++++++.++.+.
T Consensus 137 ~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 44554 7888889999999998653
No 57
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.74 E-value=9.7e-17 Score=126.84 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.|+|+|++|+|||||+|+|++...... ...+.|........... .+..+.+|||||.... .....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHHH
Confidence 599999999999999999997765222 12233433333333311 3678999999995431 11112
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 177 (301)
..+..+|++++|+|+++.........+..+.. .+. |+++++||+|........+...+.. +.... ...+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~~----p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 138 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-ANV----PFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEWG 138 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cCC----CEEEEEEceecccccHHHHHHHHHH-----hhcccccccc
Confidence 23456799999999986555555555555543 232 8999999999764311111111111 00000 0111
Q ss_pred --CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+++ ++|+..+.++.+|++++....
T Consensus 139 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 139 GDVQIV------PTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcCcEE------EeecccCCCHHHHHHHHHHhh
Confidence 1233 378888899999999987654
No 58
>PRK04213 GTP-binding protein; Provisional
Probab=99.74 E-value=2.8e-16 Score=128.13 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=96.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-- 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-- 95 (301)
...+|+++|++|+|||||+|+|+|... ..+. ..+.|.... ... +. .+.+|||||++..........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-~~~~t~~~~--~~~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-RPGVTRKPN--HYD-WG--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-CCceeeCce--EEe-ec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 347899999999999999999998764 2221 123333222 122 22 68999999986644433222222222
Q ss_pred --HHhccCCCccEEEEEEecCCCCC-----------HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188 96 --CLGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (301)
Q Consensus 96 --~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 162 (301)
++......++++++|+|.+.... ..+...+..+... + .|+++|+||+|+... . .+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~----~p~iiv~NK~Dl~~~--~--~~~~- 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-G----IPPIVAVNKMDKIKN--R--DEVL- 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-C----CCeEEEEECccccCc--H--HHHH-
Confidence 22223346689999999863211 1223334444332 2 299999999997644 2 1111
Q ss_pred ccCCchHHHHHHHcCC--ceEEe-cCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 163 ~~~~~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+....+. .+..+ .....+||+++ |+++++++|...+..
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 122222221 10000 01234899999 999999999887654
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=2.1e-16 Score=124.77 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++....... ....+.......+. .++ ..+.+|||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcHh-----------HHHHH
Confidence 68999999999999999999976642211 11222222222222 333 3678999999433 12222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...++.+|++++|+|++++-+-.. ..++..+....... .|++++.||+|.........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334577899999999984333222 23444444432222 3999999999976441111111 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+.++++ .|++++.++.+++..+.+.+
T Consensus 138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 GIPFLE------TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred CCeEEE------EECCCCcCHHHHHHHHHHHH
Confidence 555665 78888899999999987655
No 60
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=4.4e-17 Score=128.77 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccC--CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+|+|++|+|||||+|+|++......+. .....|.......+. .++..+.+|||||.... .....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQESL-----------RSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChhh-----------HHHHH
Confidence 48999999999999999998754321111 111223333333333 56789999999996542 11222
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+.++|++++|+|++++-+... ...+..+..... ....|+++++||+|.... ....+.... +.......+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~~ 140 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEIG 140 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHH-----hcccccccc
Confidence 33567899999999983322111 222222222111 112399999999997644 322221111 111111111
Q ss_pred ---CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 178 ---NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 178 ---~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
..++ ..|++++.|+++++++|.
T Consensus 141 ~~~~~~~------~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 141 RRDCLVL------PVSALEGTGVREGIEWLV 165 (167)
T ss_pred CCceEEE------EeeCCCCcCHHHHHHHHh
Confidence 2233 378899999999999885
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.74 E-value=1.2e-16 Score=126.07 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|.+|+|||||++++++...........+.+ ........ .....+.+|||||..... .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence 679999999999999999999876422222211211 11111111 233567899999976531 11122
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
++..+|++++|+|++++-+... ..++..+.+..+.. ...|+++|.||+|.... ..+.... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence 3457799999999985544443 44556666654321 22399999999997643 1111100 111222233
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..++. +||+++.++++++++|..+
T Consensus 140 ~~~~e------~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFME------TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEEE------eecCCCCCHHHHHHHHHhc
Confidence 34444 8899999999999998654
No 62
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.9e-16 Score=142.72 Aligned_cols=169 Identities=16% Similarity=0.141 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
-.|+|+|.+|||||||+|+|++... . .+..+.|+...........+..++++||||+.........+..++.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp--k-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP--K-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc--c-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 3699999999999999999998754 2 2233333333233333356778999999999764332333444444443
Q ss_pred cCCCccEEEEEEecCCCC----CHHHH-HHHHHHHHhhC---------ccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188 100 AKDGIHAFLVVFSVTNRF----SQEEE-TAVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~----~~~~~-~~l~~l~~~~~---------~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 165 (301)
..++++++|+|+++.. ...+. .+...|..... .-..+|+++|+||+|+... ..+.+.+
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l---- 306 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV---- 306 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence 4559999999997311 11121 22223332221 1123499999999997644 2222222
Q ss_pred CchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
...+...+.++++ +|+.++.++++|+.+|...+...
T Consensus 307 ----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 307 ----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred ----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhh
Confidence 2223333445555 78888999999999998887654
No 63
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.73 E-value=4.3e-16 Score=126.35 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.+|+|+|.+|+|||||++++++....... .+|+. ....... +++ ..+.+|||||........ .++...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~----~pt~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~~~---~~e~~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY----IPTEHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPGTA---GQEWMD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc----CCccccccceeEEE-ECCEEEEEEEEeCCCcccCCccc---hhHHHH
Confidence 36999999999999999999986642211 12221 1111122 455 467899999986543211 122222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.....+..+|++++|+|++++.+-.. ..+++.+.+... .....|++++.||+|+... ..... ..+..+.
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~-------~~~~~~~ 143 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPR-------HVLSVLV 143 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccH-------HHHHHHH
Confidence 22233567899999999985443333 334444444321 0112399999999997543 11110 0022222
Q ss_pred H-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (301)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 213 (301)
. ..+..++. +|++++.++++|++.+...+...+.
T Consensus 144 ~~~~~~~~~e------~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 144 RKSWKCGYLE------CSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred HHhcCCcEEE------ecCCCCCCHHHHHHHHHHHhhccCC
Confidence 2 22344554 8899999999999999877655443
No 64
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=1.8e-16 Score=123.97 Aligned_cols=155 Identities=20% Similarity=0.259 Sum_probs=95.8
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (301)
Q Consensus 24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
|+|++|+|||||+|++++....... ..+.|.......+. +++..+.+|||||+.+....... ..+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN--WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC--CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence 5899999999999999987632221 22334444333334 56778999999998765432211 1122221111 58
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEe
Q 022188 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (301)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (301)
+|++++|+|+.. ... ...++..+.. .+ .|+++++||+|.... ..+... ...+....+.++++
T Consensus 75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~~- 136 (158)
T cd01879 75 PDLIVNVVDATN-LER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVVP- 136 (158)
T ss_pred CcEEEEEeeCCc-chh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeEE-
Confidence 899999999983 222 2233333332 22 399999999998654 222211 22333334545555
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 022188 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.|+..+.++.++++++...
T Consensus 137 -----iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 137 -----TSARKGEGIDELKDAIAEL 155 (158)
T ss_pred -----EEccCCCCHHHHHHHHHHH
Confidence 7888889999999988765
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=2e-16 Score=124.48 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++....... ....+......... .++ ..+.+|||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCChHH-----------HHHHH
Confidence 37999999999999999999987652211 11122222222222 344 3678999999432 11222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..+|++++|+|++++-+... ..++..+....+... |++++.||+|.... ..+. .+....+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~--pivvv~nK~D~~~~--~~~~-------~~~~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNV--VIMLVGNKSDLEDQ--RQVS-------REEAEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEEchhcccc--cCCC-------HHHHHHHHHHc
Confidence 233567799999999984433333 234444444332223 99999999997643 1111 01123344455
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..++. .|+..+.+++++++.+...+.
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 655555 677788999999999987653
No 66
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=4.5e-16 Score=148.80 Aligned_cols=174 Identities=19% Similarity=0.190 Sum_probs=110.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+|+|++|+|||||+|+|++..... ....+.|+.........+++..+.+|||||+....... ...+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~--v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~--~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAV--VNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL--TGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc--cCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence 34799999999999999999999987421 22223333333222333678889999999986532221 112222222
Q ss_pred --hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..+++.+|++++|+|++.+.+..+...+..+... + .|+++|+||+|+... .....+... +...+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence 1235778999999999988888887766655442 2 299999999998644 222211111 1111111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
. .+.+....||+++.|+.+|++.+........
T Consensus 593 ~-----~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 593 V-----TWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred C-----CCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 1 1111233799999999999999998876543
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.73 E-value=3e-16 Score=123.50 Aligned_cols=158 Identities=22% Similarity=0.175 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++....... ..|...........++ ..+.+|||||..+.. ...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 67 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-----------AMR 67 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEECCEEEEEEEEECCCCcchh-----------HHH
Confidence 68999999999999999999976542111 1222211111112344 357899999965531 112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...++.+|++++|+|++++-+... ..++..+...... ...|++++.||+|+... ..+... . ...+....
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~~ 137 (164)
T cd04145 68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARKL 137 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHHc
Confidence 223456799999999984433332 2333444333211 12399999999997643 111110 0 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+..++. +|++++.+++++++.+...+
T Consensus 138 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 138 KIPYIE------TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCcEEE------eeCCCCCCHHHHHHHHHHhh
Confidence 445554 78888999999999886543
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=3.8e-16 Score=123.15 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++....... .+..+.......+. .++ ..+.+|||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDS--KSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHHHH
Confidence 68999999999999999999987652211 12222222222222 334 3678999999432 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..++++++|+|++++.+... ..++..+.+..... .|++++.||.|+........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 334567799999999984444333 33555555543322 3999999999975431011111 22333333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+..++. .|++++.+++++++.+...
T Consensus 139 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFIE------TSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEEE------EECCCCCCHHHHHHHHHHH
Confidence 444554 7888899999999998654
No 69
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2.2e-16 Score=143.64 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|.+|+|||||+|+|+|........ ..+.|....... ..+++..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~-~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGE-AEWLGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEE-EEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 479999999999999999999887522221 233444433333 33678899999999998722 1233333333344
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
++..+|++++|+|+..+++..+.....+++.. +. |+++++||+|..... ... .++. ..+..
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~~----piilv~NK~D~~~~~-~~~------------~~~~-~lg~~ 137 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-NK----PVILVVNKVDGPDEE-ADA------------YEFY-SLGLG 137 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----cEEEEEECccCccch-hhH------------HHHH-hcCCC
Confidence 45677999999999978888887777777764 33 999999999954320 111 1111 12221
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.....|+..+.++.++++.+..
T Consensus 138 -----~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 -----EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred -----CCEEEEeeCCCCHHHHHHHHHh
Confidence 1223688888899998888866
No 70
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.73 E-value=4.8e-16 Score=128.15 Aligned_cols=161 Identities=14% Similarity=0.031 Sum_probs=99.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
....+|+++|.+|+|||||+++++............+.+.. ...+.. .....+.+|||||...+ ..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKF-----------GG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence 45689999999999999999998755431111111111111 111221 12357899999995542 12
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....+++++|++|+|+|++++.+-.. ..++..+..... +. |+++|.||+|+... ....+. + .+..
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~~--------~-~~~~ 143 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NI--PIVLCGNKVDVKNR--QVKAKQ--------V-TFHR 143 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CC--cEEEEEEchhhhhc--cCCHHH--------H-HHHH
Confidence 22234678899999999995544443 345555555432 23 99999999997532 111111 1 2223
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +||+++.++.+++.++...+..
T Consensus 144 ~~~~~~~e------~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 144 KKNLQYYE------ISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred hcCCEEEE------cCCCCCCCHHHHHHHHHHHHHc
Confidence 33445554 7899999999999999877653
No 71
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=1.3e-15 Score=137.18 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+.+|+|+|++|+|||||+|+|++..... .+..+.|+.........+++..+.+|||||+.+... .+...-....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--vs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~---~ie~~gi~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--VSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD---FVERLGIEKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc--cCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh---HHHHHHHHHH
Confidence 45799999999999999999999875421 222333333322222336788999999999876432 1111111112
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
..++..+|++++|+|++++.+..+. ++..+.. .. .|+++|+||+|+.
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~ 323 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK 323 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence 2345678999999999866665554 4333322 12 2899999999975
No 72
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.73 E-value=2.1e-16 Score=128.33 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.|+++|..|+|||||++++..... .... ....+.......+. .++ ..+.+|||+|... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~-~~Ti~~~~~~~~i~-~~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEAC-KSGVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 589999999999999999986654 2211 11111122222222 344 5679999999433 222234
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (301)
.+++++|++++|+|++++-+-.. ..++..+......+. |+++|.||+|+... ..+.... ...+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~--piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 45778899999999996555444 345555555433333 99999999997543 1111110 11222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. +||+++.++.+++.++...+..
T Consensus 137 ~~~~~e------tSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 137 GMRFCE------ASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 333443 8899999999999999876543
No 73
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.73 E-value=2.2e-16 Score=130.02 Aligned_cols=161 Identities=22% Similarity=0.179 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.+|+|+|.+|+|||||++++++..... ...+|..... ......+ ...+.+|||||... ...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~----~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~ 65 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK----SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGK 65 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC----CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHH
Confidence 369999999999999999999765421 1122332221 2222112 35788999999322 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++.++|++++|+|++++-+-.. ..++..+...... ....|+++|.||+|+... ..+.. .....+.
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~-------~~~~~~~ 136 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKD-------DKHARFA 136 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCH-------HHHHHHH
Confidence 23334678899999999985434333 3455666655432 111278999999997633 11110 0123344
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +||+++.+++++++++...+..
T Consensus 137 ~~~~~~~~~------iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 137 QANGMESCL------VSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 444544444 7899999999999999877654
No 74
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.72 E-value=3.4e-16 Score=125.83 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|..|+|||||+.++.+... .... ....+.......+. .++ ..+.+|||||... +...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~-~~~~~~~l~iwDt~G~~~-----------~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTIL-LDGRRVKLQLWDTSGQGR-----------FCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47899999999999999999986543 2111 11112222112222 344 4678999999543 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+++++|++|+|+|++++.+-.. ..++..+..... .+ |++||.||.|+........++ .+.+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~--piilVGNK~DL~~~~~v~~~~---------~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GV--PKILVGNRLHLAFKRQVATEQ---------AQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccchhccCCCHHH---------HHHHHHH
Confidence 3345678899999999996555555 446666655433 33 999999999975431011111 3344455
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 213 (301)
.+..++. +||+++.+++++++++.+.+....+
T Consensus 140 ~~~~~~e------~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 140 NGMTFFE------VSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 5556665 8999999999999999877655444
No 75
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=1.9e-16 Score=126.01 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=92.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.....+|+++|++|+|||||++++++.... . ...|......... .++..+.+|||||... +..
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~---~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~ 73 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDID--T---ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------LRP 73 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCC--C---cCCccccceEEEE-ECCEEEEEEECCCCHH-----------HHH
Confidence 345589999999999999999999987431 1 1122222222222 4577889999999543 111
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++.++|++++|+|++++-+-.. ..++..+ ......+ .|+++++||+|+... ...++ +...+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~--~~~~~---------~~~~~ 140 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAG--ATLLILANKQDLPGA--LSEEE---------IREAL 140 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcC--CCEEEEEECcccccC--CCHHH---------HHHHh
Confidence 22334567899999999984422222 2222222 2111122 399999999997644 22221 11111
Q ss_pred HH-----cCCceEEecCCCcccccchhHHHHHHHHHH
Q 022188 174 QL-----CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 174 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
.. .+.+++ .+||+++.|++++++++.
T Consensus 141 ~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 141 ELDKISSHHWRIQ------PCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CccccCCCceEEE------eccCCCCcCHHHHHHHHh
Confidence 11 112233 378999999999999874
No 76
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=1.3e-16 Score=129.11 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEeEEEEe-------------eCCeeEEEEeCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD 81 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~---~~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~liDtPG~~~ 81 (301)
.+|+++|++|+|||||++++++.. .+... ....+.|.......... ..+..+.+|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999999731 11010 00112333333322221 1256889999999632
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
....+. .....+|++++|+|+..+.+......+... ...+. |+++++||+|.... .......
T Consensus 81 -------~~~~~~----~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~~----~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -------LIRTII----GGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILCK----KLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -------HHHHHH----HHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcCC----CEEEEEECcccCCH--HHHHHHH
Confidence 122222 223556999999999866655554444433 22333 89999999998744 3333222
Q ss_pred cccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 162 GHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. ....+...+... +.++++ .|++++.|+++|++.+...++.
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi~------iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPIIP------VSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEEE------EeccCCCCHHHHHHHHHhcccc
Confidence 22 111122222211 223444 8889999999999999877643
No 77
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=6.3e-16 Score=121.91 Aligned_cols=163 Identities=19% Similarity=0.273 Sum_probs=98.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh---
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG--- 98 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~--- 98 (301)
|+++|++|+|||||+|+|++...........+.|...... .....+++|||||+.....+... .+.+...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~~~-~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSKEV-KEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCHHH-HHHHHHHHHHHH
Confidence 8999999999999999999543322222222333322221 12238899999998876443211 122222211
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH--Hc
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ--LC 176 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 176 (301)
.....++++++++|.....+......++++... + .|+++++||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 223456889999999856666666666666653 3 289999999998654 333322222 233332 12
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..++++ .|++++.++.++++++...
T Consensus 145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIIL------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEE------EecCCCCCHHHHHHHHHHh
Confidence 234444 6777788999999988654
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.72 E-value=9.8e-17 Score=128.27 Aligned_cols=160 Identities=19% Similarity=0.166 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc------cccCC-------CCCcceeeEeEEEE----eeCCeeEEEEeCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAF------KASAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~------~~~~~-------~~~~t~~~~~~~~~----~~~~~~~~liDtPG~~~~ 82 (301)
++|+++|++|+|||||++++++.... ..... ..+.+......... ...+..+.+|||||..++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 46999999999999999999874310 00000 01222222211111 123456889999997653
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 162 (301)
. .... .++.++|++++|+|++++.+..+...+..+.. . .. |+++++||+|.... . .....
T Consensus 81 ~-------~~~~----~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-~--~~--~iiiv~NK~Dl~~~--~-~~~~~- 140 (179)
T cd01890 81 S-------YEVS----RSLAACEGALLLVDATQGVEAQTLANFYLALE-N--NL--EIIPVINKIDLPSA--D-PERVK- 140 (179)
T ss_pred H-------HHHH----HHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-c--CC--CEEEEEECCCCCcC--C-HHHHH-
Confidence 1 1222 23456799999999986666555544443332 1 22 89999999997533 1 11111
Q ss_pred ccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+....+... ......|++++.++++|++++...++
T Consensus 141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 12222223210 11124888999999999999976653
No 79
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.72 E-value=5.4e-16 Score=121.65 Aligned_cols=156 Identities=18% Similarity=0.154 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||+|++++....... ..|...........++ ..+.+|||||.... ....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEECCEEEEEEEEECCCCcch-----------HHHH
Confidence 57999999999999999999976642221 1121111111112344 34678999995442 1112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..++++++|++++++-+-.. ..++..+...... ...|++++.||+|.... ...... ...+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence 223456799999999984333233 2344444443221 12399999999997643 111111 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+..++. +|++++.|++++++++.+.
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIPYIE------TSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence 555555 7888999999999988654
No 80
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.72 E-value=3e-16 Score=127.69 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||++++.+......-.. ..........+. ..+ ..+.+|||||.... ...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~~-----------~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT--TIGVDFKIRTVE-INGERVKLQIWDTAGQERF-----------RTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCc--cccceeEEEEEE-ECCEEEEEEEEeCCCchhH-----------HHH
Confidence 47899999999999999999997764211111 111111111222 233 36789999994331 112
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++.+++++++|+|++++-+-.. ..++..+....+ . .|+++|.||+|+... ..+... ....+...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~--~piivVgNK~Dl~~~--~~~~~~-------~~~~~~~~ 139 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD-D--VCKVLVGNKNDDPER--KVVETE-------DAYKFAGQ 139 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccccc--cccCHH-------HHHHHHHH
Confidence 2334567899999999985443333 334555544432 2 389999999997643 111100 02233344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|+.++.++.++++++...+.
T Consensus 140 ~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 140 MGISLFE------TSAKENINVEEMFNCITELVL 167 (199)
T ss_pred cCCEEEE------EECCCCcCHHHHHHHHHHHHH
Confidence 4555555 788889999999999987654
No 81
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=5.7e-16 Score=131.58 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=102.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEE-eeCC--eeEEEEeCCCCCCCCCCcHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGSEFV 89 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~-~~~~--~~~~liDtPG~~~~~~~~~~~ 89 (301)
..+|+|+|++|+|||||+|+|++......... ....|......... ..++ ..+++||||||++.... ...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence 37899999999999999999999887544321 12334333322221 1344 36899999999986532 222
Q ss_pred HHHHHHHHh----------------cc--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 90 GKEIVKCLG----------------MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 90 ~~~~~~~~~----------------~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
++.+..++. .. ...+|+++|+++.+ .++...+...++.+.. .+ |+++|+||+|..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~v--~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----RV--NIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----cC--CEEEEEECCCcC
Confidence 333332111 11 23589999999987 4677777777777764 22 899999999987
Q ss_pred CCccccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (301)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (301)
.. ..+..+... +.+.+...+.+++.|...
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCCC
Confidence 65 455555554 777788888888876653
No 82
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=3.6e-16 Score=127.43 Aligned_cols=160 Identities=14% Similarity=0.056 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
.+|+|+|.+|+|||||++++++...... ...|.... ...+. .+ ...+.+|||||... +.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~-~~~~~~~~l~l~Dt~G~~~-----------~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIE-WDPNTVVRLQLWDIAGQER-----------FG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEE-ECCCCEEEEEEEECCCchh-----------hh
Confidence 3699999999999999999997654221 12232211 11222 22 34678999999533 11
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC--ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
.....+++++|++++|+|++++.+-.. ..++..+..... .....|+++|.||+|+........++ +..
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~ 135 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQ 135 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHH
Confidence 222334678899999999985443333 233344443221 11223999999999976321011111 334
Q ss_pred HHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+....+ ..++. +|++++.+++++++++...+..
T Consensus 136 ~~~~~~~~~~~e------~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 136 FCKENGFIGWFE------TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444444 34444 7888999999999999876644
No 83
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.72 E-value=1.2e-16 Score=127.24 Aligned_cols=161 Identities=21% Similarity=0.169 Sum_probs=92.8
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCC
Q 022188 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (301)
Q Consensus 24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
|+|++|||||||+|+|++... ... ...+.|......... ++ +..+.+|||||+.+.....+.+...+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVA-NYPFTTLEPNLGVVE-VPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-ccc-CCCceeecCcceEEE-cCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 589999999999999999864 111 112233333333233 55 7889999999986532211112222222 234
Q ss_pred CccEEEEEEecCCCC------CHHH-HHHHHHHHHhhCc-----cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 103 GIHAFLVVFSVTNRF------SQEE-ETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 103 ~~~~il~v~~~~~~~------~~~~-~~~l~~l~~~~~~-----~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
++|++++|+|+.++. +..+ ..+...+...... ....|+++|+||+|.... ........ .
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence 579999999998442 2222 2233333322110 012499999999998655 33322210 1
Q ss_pred HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
......+..++. +|++.+.+++++++.+..
T Consensus 145 ~~~~~~~~~~~~------~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 145 ELALEEGAEVVP------ISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HHhcCCCCCEEE------EehhhhcCHHHHHHHHHh
Confidence 111222344454 788888999999998754
No 84
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.72 E-value=7.6e-16 Score=122.34 Aligned_cols=160 Identities=16% Similarity=0.103 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|..|+|||||++++.+...... ..+|...........++ ..+.+|||||.... ....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY----HDPTIEDAYKQQARIDNEPALLDILDTAGQAEF-----------TAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC----cCCcccceEEEEEEECCEEEEEEEEeCCCchhh-----------HHHh
Confidence 6899999999999999999987654221 11222211111112344 35789999995442 2222
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++.++|++++|+|++++.+-... .++..+..... ....|+++|.||+|+... ..+.... ...+....
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~ 137 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF 137 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence 3345678999999999966665553 34445554321 112399999999997543 2221111 12333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+.+++. +||+.+.+++++++++...+..
T Consensus 138 ~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 138 NCPFFE------TSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CCEEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 555555 8888999999999999765543
No 85
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=4.6e-16 Score=126.24 Aligned_cols=171 Identities=20% Similarity=0.187 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV---TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|++|+|||||+|+|+|......+....+. |..... +.......+.+|||||+.+...... ++...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence 57999999999999999999997654333322221 211111 1112245789999999987543322 22222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc-------cHHHHhcccCCchH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL 169 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~-------~~~~~~~~~~~~~l 169 (301)
+ .+.+.|+++++.+ .+++..+..+++.++.. +. |+++|+||+|....... ..++.+.. ....+
T Consensus 76 ~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 M--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred h--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 2 2567788888754 37888898888888775 43 89999999998643100 12333433 22223
Q ss_pred HHHHHHcC---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 170 KEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 170 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+...+ .++++.+.... .+.++..|.+.+...++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence 33443322 35566333321 346788888888777765
No 86
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=3.6e-16 Score=123.95 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+|+++|.+|+|||||++++.+..... . ..+|..... ..+. .++ ..+.+|||||... +...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~-~---~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK-N---YKATIGVDFEMERFE-ILGVPFSLQLWDTAGQER-----------FKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-C---CCCceeeEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHhh
Confidence 68999999999999999999876421 1 122322221 1122 233 4689999999533 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHh-hCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~-~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++++|++++|+|++++-+... ..++..+.+. .+.. .|+++|.||.|+... ........ ....+..
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~--~~~~~~~~-----~~~~~~~ 136 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSP--AQYALMEQ-----DAIKLAA 136 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCcc--ccccccHH-----HHHHHHH
Confidence 2334678899999999984322222 3344444332 2222 278999999997543 11110000 0223334
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.++.++++.+...+.+
T Consensus 137 ~~~~~~~e------~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 137 EMQAEYWS------VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 44445554 7888999999999999877644
No 87
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.72 E-value=2.6e-16 Score=124.00 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=97.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
|+++|.+|+|||||++++.+....... .+|......... ..+..+.+|||||..... .....++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i~-~~~~~l~i~Dt~G~~~~~-----------~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAIP-TQDAIMELLEIGGSQNLR-----------KYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEEe-eCCeEEEEEECCCCcchh-----------HHHHHHH
Confidence 899999999999999999977542211 112111122222 456789999999965421 1112235
Q ss_pred CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (301)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (301)
+++|++++|+|.+++.+-.. +.++..+.... ...|++++.||.|+... ..+.+.... .. +..+....+..+
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~~~ 137 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAA--RSVQEIHKE-LE--LEPIARGRRWIL 137 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCC--CCHHHHHHH-hC--ChhhcCCCceEE
Confidence 67799999999985432222 22333332211 22399999999997654 333332211 00 233333334445
Q ss_pred EEecCCCcccccchhHHHHHHHHHH
Q 022188 181 VLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
+.......+|+.++.++.++++.+.
T Consensus 138 ~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 138 QGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EEeeecCCCChhHHHHHHHHHHHHh
Confidence 5555667788888999999998764
No 88
>PLN03110 Rab GTPase; Provisional
Probab=99.72 E-value=5.3e-16 Score=127.73 Aligned_cols=162 Identities=15% Similarity=0.111 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+++|++|+|||||++++++......... ..........+. .++ ..+.||||||... +..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~--t~g~~~~~~~v~-~~~~~~~l~l~Dt~G~~~-----------~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKS--TIGVEFATRTLQ-VEGKTVKAQIWDTAGQER-----------YRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHH
Confidence 347999999999999999999998765222111 111111112222 333 4778999999332 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....+++.++++++|+|.+++-+... ..++..+......+. |++++.||+|+... ..+.... ...+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--piiiv~nK~Dl~~~--~~~~~~~-------~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNI--VIMMAGNKSDLNHL--RSVAEED-------GQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC--eEEEEEEChhcccc--cCCCHHH-------HHHHHH
Confidence 33345678899999999985443333 345555655543333 99999999997543 1111110 223334
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++.+.+++++++.+...+..
T Consensus 146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44555555 7888899999999998766543
No 89
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=2.4e-16 Score=124.90 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|.+|+|||||++++.+... .. ..+|......... ..+..+.+|||||..... ......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~~-----------~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVE-YKNLKFTIWDVGGKHKLR-----------PLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEE-ECCEEEEEEECCCChhcc-----------hHHHHH
Confidence 489999999999999999998643 11 2223322223223 567789999999965421 112223
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+.++|++++|+|++++-+-.+ ..++..+...... ...|++++.||.|+... ...++.... ..+...+..+
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~--~~~~~~~~~------~~~~~~~~~~ 134 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKEL-RDALLLIFANKQDVAGA--LSVEEMTEL------LSLHKLCCGR 134 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhh-CCCCEEEEEeCcCcccC--CCHHHHHHH------hCCccccCCC
Confidence 567799999999984322222 2223322221110 11389999999997644 233322111 0000111111
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
...| ..+||+++.|+++++++|.+.+..+
T Consensus 135 ~~~~---~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 135 SWYI---QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cEEE---EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 1111 1368999999999999998776553
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=4.3e-16 Score=122.19 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||+|++++........ ...+......... ..+ ..+.+|||||... +....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE--STTQASFFQKTVN-IGGKRIDLAIWDTAGQER-----------YHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CccceeEEEEEEE-ECCEEEEEEEEECCchHH-----------HHHhh
Confidence 379999999999999999999776522211 1111111111122 223 3688999999332 11112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..+|++++|+|.+++-+... ..++..+......+ .|+++++||+|.... ..+.. ..+..+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~--~~~~~-------~~~~~~~~~~ 135 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQ--RVVSK-------SEAEEYAKSV 135 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCH-------HHHHHHHHHc
Confidence 223467899999999984433333 23444555544332 399999999997643 11110 0122334444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+..++. .|++++.+++++++++.+.
T Consensus 136 ~~~~~~------~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 136 GAKHFE------TSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHH
Confidence 555554 7788889999999998654
No 91
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=3.5e-16 Score=123.54 Aligned_cols=156 Identities=17% Similarity=0.091 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEE--Ee-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+++|++|||||||+++++....... ...|........ .. .....+.+|||||...... +
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~--- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------L--- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------c---
Confidence 3799999999999999999985543111 122222222211 11 1234778999999654321 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....+..+|++++|+|++++.+... ..++..+....+ ..|+++|.||+|+... ....+ ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 1123567899999999985444333 345555655543 2399999999997533 11010 1122233
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +||+++.+++++++++.+.+.+
T Consensus 132 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYYE------ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEEE------EeCCCCCChHHHHHHHHHHHHh
Confidence 3344555 7889999999999999877654
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.71 E-value=3.5e-16 Score=123.23 Aligned_cols=159 Identities=21% Similarity=0.179 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||+|++.+........ .|...........++ ..+.+|||||...... + .
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~---~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD----PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA--------M---R 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccC----CchhhhEEEEEEECCEEEEEEEEECCCcccchH--------H---H
Confidence 379999999999999999999866422111 111111111111333 4678999999665311 1 1
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..+|++++|+|++++-+-.. ..+...+...... ...|++++.||+|.... ..+... ....+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~-------~~~~~~~~~ 135 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE-------EGKELARQW 135 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH-------HHHHHHHHc
Confidence 122456699999999984433333 2333444433221 12399999999997643 111110 022334444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.++++ +|++++.+++++++++.+.+.
T Consensus 136 ~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 136 GCPFLE------TSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CCEEEE------eecCCCCCHHHHHHHHHHHHh
Confidence 555555 788889999999999876543
No 93
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=3.4e-16 Score=126.44 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=95.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+|+|.+|+|||||++++++....... ..|...........++. .+.+|||||.... .....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY----DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY-----------TALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchHhhEEEEEEECCEEEEEEEEECCCchhh-----------HHHHH
Confidence 4899999999999999999865532111 11211111111123444 4789999995432 11222
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
.+++++|++++|+|++++-+... ..++..+...... ....|+++|.||+|+... ..+.... ...+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEE-------GAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHh
Confidence 34567799999999985443333 3455555544321 122399999999997543 1111100 12233444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. .||+++.++++++.++...+..
T Consensus 137 ~~~~~e------~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFIE------ASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 555554 8888999999999999876543
No 94
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=4.9e-16 Score=125.30 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++++.........+ .+.......+. .++ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKST--IGVDFKIKTVY-IENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHhhH
Confidence 36999999999999999999977652211111 11111112222 333 3568999999443 11122
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+.++|++++|+|++++-+-.. ..++..+....+.. .|++++.||.|.... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 334678899999999985433333 23444444443323 389999999997643 2111111 12233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+.+++. +|++++.++++++.++...+..
T Consensus 136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFE------TSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 445555 7888889999999998776543
No 95
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.4e-16 Score=120.46 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=113.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|.+|+|||.|+.++.+.....+-.++.++........+. .....+.||||.|- +.+.....
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQ-----------ERFrtit~ 76 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQ-----------ERFRTITS 76 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeecccc-----------HHHhhhhH
Confidence 3789999999999999999999888755555555444333322211 12337899999993 34445566
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.+|+++|++|+|.|++.+-+-.. ..|+..+.......+ |.++|.||+|+.+. ..+.... .+.+....+
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~~~ 145 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADELG 145 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHhcC
Confidence 67999999999999995544444 456677776655555 99999999997655 2221111 134445555
Q ss_pred Cc-eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 178 NR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+ ++. +||+...++++.+..+...+...
T Consensus 146 ~~~f~E------TSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 146 IPIFLE------TSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred Ccceee------cccCCccCHHHHHHHHHHHHHHh
Confidence 54 443 88888899999999888776553
No 96
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=3.3e-16 Score=126.31 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=89.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
..+|+++|+.++|||||+++|++...... .....+.|.......+. +++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHH---
Confidence 37899999999999999999986411000 00123445554444443 5778899999999643
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH-Hhcc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGH 163 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~-~~~~ 163 (301)
+...+......+|++++|+|+..+....+...+..+... +.+ ++++++||+|.... ....+ ...+
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~--~~~~~~~~~~ 143 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD--EELLELVEME 143 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc--HHHHHHHHHH
Confidence 222223334567999999999877888887877777654 431 37899999998643 33333 2223
Q ss_pred cCCchHHHHHHHcC
Q 022188 164 ECPKPLKEILQLCD 177 (301)
Q Consensus 164 ~~~~~l~~~~~~~~ 177 (301)
+..++..++
T Consensus 144 -----i~~~l~~~g 152 (195)
T cd01884 144 -----VRELLSKYG 152 (195)
T ss_pred -----HHHHHHHhc
Confidence 566666554
No 97
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=6.7e-16 Score=147.61 Aligned_cols=162 Identities=21% Similarity=0.182 Sum_probs=108.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|+|....... ...+.|... ......+++..+.+|||||+.... ..+...+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~-~~~~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDR-VSYDAEWAGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEE-EEEEEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 468999999999999999999987642221 123444443 333334778899999999987422 123334444444
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 177 (301)
.++..+|++|+|+|++.+++..+..+...+... + .|+++|+||+|.... ... ...... .+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~-lg~ 410 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWK-LGL 410 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHH-cCC
Confidence 456678999999999877888887777777642 2 399999999997533 110 111111 12
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+ ++||..+.|+.+|++++...++.
T Consensus 411 ~~~~------~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 411 GEPY------PISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCeE------EEECCCCCCchHHHHHHHHhccc
Confidence 1222 37999999999999999877643
No 98
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.71 E-value=6.1e-16 Score=121.62 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++.+......- .+|...........++ ..+.+|||||..... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEECCEEEEEEEEECCCccccc-----------hHH
Confidence 68999999999999999999976542211 1122111111111344 356789999965421 111
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+++++|++++|+|++++-+-.. ..++..+...... ...|++++.||+|.... ..+... . ...+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~--~~~~~~--~-----~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE--RVVSRE--E-----GQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceecHH--H-----HHHHHHHc
Confidence 223567899999999984433333 3344445443221 12399999999997543 111110 0 12233444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+.+++. +|++++.++.+++.++...
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFYE------TSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHh
Confidence 445555 7888999999999998654
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=4.5e-16 Score=121.36 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.+|+++|++|+|||||+|++++...........+.+... ..+.. .....+.+||+||... +.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKS--KTIEIDGKTVKLQIWDTAGQER-----------FRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEE--EEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence 379999999999999999999877633311111111111 11111 1235788999999533 222223
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.....+|++++|+|++++-+... ..++..+....... .|+++++||+|..... ....+. .+.+....+
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~~~ 136 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQR-QVSTEE--------AQQFAKENG 136 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccc-cccHHH--------HHHHHHHcC
Confidence 34567899999999984322222 33444554443122 3999999999985221 111111 333444445
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
..++. .|+..+.++.+++.++.
T Consensus 137 ~~~~~------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 137 LLFFE------TSAKTGENVEELFQSLA 158 (159)
T ss_pred CeEEE------EecCCCCCHHHHHHHHh
Confidence 55555 67777889999998874
No 100
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.71 E-value=9.2e-16 Score=122.76 Aligned_cols=163 Identities=13% Similarity=0.050 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---------eCCeeEEEEeCCCCCCCCCCcHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---------KDGQVVNVIDTPGLFDLSAGSEFV 89 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---------~~~~~~~liDtPG~~~~~~~~~~~ 89 (301)
..+|+++|++|+|||||++++.+......-....+............ .....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE--------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH---------
Confidence 37899999999999999999997664221111111111111111110 112467899999922
Q ss_pred HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 168 (301)
.+.......+.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+... ..+.. ..
T Consensus 75 --~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~v~~-------~~ 142 (180)
T cd04127 75 --RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYC-ENPDIVLCGNKADLEDQ--RQVSE-------EQ 142 (180)
T ss_pred --HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEeCccchhc--CccCH-------HH
Confidence 233333445678899999999984433333 2344444433211 11289999999997643 11110 01
Q ss_pred HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+....+.+++. +|++++.+++++++.+...+
T Consensus 143 ~~~~~~~~~~~~~e------~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 143 AKALADKYGIPYFE------TSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHcCCeEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 23344444555554 78889999999999987654
No 101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.71 E-value=6.6e-16 Score=121.62 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeeEe--EEEE--eeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEM--KTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
.+|+++|.+|+|||||++++.+.. .+... ...|..... .... ......+.+|||||... ..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HH
Confidence 369999999999999999998542 22221 122221111 1111 12346789999999322 12
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.........+|++++|+|++++.+... ..++..+.... ...|+++|.||+|.... ..+.... ...+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 222334567899999999984433222 34444444432 12399999999997543 1111110 11222
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
...+..++. +|+.++.++.++++.+.+.
T Consensus 135 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLKFFK------TSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHcCCeEEE------EeCCCCCChHHHHHHHHHH
Confidence 333434444 7888899999999988764
No 102
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.71 E-value=5.5e-16 Score=121.80 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+|+++|++|+|||||++.+++....+.. ..|... ....+. .++ ..+.+|||||... ....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHh-----------HHhh
Confidence 6999999999999999999876652221 222221 112222 333 3678999999433 1222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++-+-.. ..++..+....... .|+++|.||.|+... ..+.... ...+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~--~~v~~~~-------~~~~~~~ 134 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQK--RQVGDEQ-------GNKLAKE 134 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCCCHHH-------HHHHHHH
Confidence 2334678899999999985433333 33444444443222 399999999997543 1111100 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+..++. +|++.+.++++++.+|.+.
T Consensus 135 ~~~~~~e------~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMDFFE------TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHhh
Confidence 4444444 8888899999999998653
No 103
>PRK11058 GTPase HflX; Provisional
Probab=99.71 E-value=6.4e-16 Score=138.46 Aligned_cols=165 Identities=18% Similarity=0.103 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
++|+|+|.+|||||||+|+|++...+.+. ..+.|.......+...+...+.+|||||+... .+ ....+.+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp-~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRH-LP-HDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCccccc-CC-HHHHHHHHHHH-H
Confidence 57999999999999999999998764222 22334333333334334458899999998542 12 22233343332 3
Q ss_pred cCCCccEEEEEEecCCCCCHHHHH-HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEET-AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
....+|++++|+|++++.+..... +..++.+....+ .|+++|+||+|+... . ...+.. ...+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~--~~~~~~----------~~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--F--EPRIDR----------DEENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--h--hHHHHH----------HhcCC
Confidence 457889999999998665444433 334444432212 399999999997633 1 111110 01121
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+. ...+|++++.|+++|++++...+..
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 21 1237899999999999999887753
No 104
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.71 E-value=1.9e-16 Score=129.61 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEeeCCeeE
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (301)
+|+|+|++|+|||||+++|++..-.... ....+.|.......+. +++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 5899999999999999999864321110 0012344444444333 678899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
.+|||||+.++ ...+. .+...+|++++|+|++.+........+..+.. .+.. ++++++||+|...
T Consensus 80 ~liDTpG~~~~-------~~~~~----~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~~---~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQY-------TRNMV----TGASTADLAILLVDARKGVLEQTRRHSYILSL-LGIR---HVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHH-------HHHHH----HhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCCC---cEEEEEEchhccc
Confidence 99999995431 11222 23457799999999986666665555454433 3422 5788999999864
Q ss_pred CccccHHHHhcccCCchHHHHHHHcCCc---eEEecCCCcccccchhHHHH
Q 022188 152 DHEKTLEDFLGHECPKPLKEILQLCDNR---CVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 199 (301)
.....+...... ++.++...+.. +++ +|+..+.++.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~~ii~------iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDITFIP------ISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCceEEE------EeCCCCCCCcc
Confidence 311223333333 55555555532 344 67777766664
No 105
>COG2262 HflX GTPases [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=136.60 Aligned_cols=164 Identities=22% Similarity=0.178 Sum_probs=110.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+..+.|+++|.||||||||+|+|++..++....- ..|-..........++..+.+.||.||.+- .| ..++.+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L--FATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP-----~~LV~A 261 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQL--FATLDPTTRRIELGDGRKVLLTDTVGFIRD-LP-----HPLVEA 261 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccc--cccccCceeEEEeCCCceEEEecCccCccc-CC-----hHHHHH
Confidence 4557899999999999999999999887644422 223222222334456889999999999873 22 344554
Q ss_pred Hhcc---CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 97 LGMA---KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 97 ~~~~---~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
+.++ ...+|++++|+|++++..... ......|.++-..+ .|+++++||+|.... ...... +
T Consensus 262 FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~-----------~ 326 (411)
T COG2262 262 FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAE-----------L 326 (411)
T ss_pred HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhh-----------h
Confidence 4443 467899999999996643333 44555666652222 499999999998755 221111 1
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
-.... +....||+++.|++.|.+.|...++.
T Consensus 327 ~~~~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 327 ERGSP-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred hhcCC-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 11111 23347999999999999999988874
No 106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.71 E-value=8.4e-16 Score=120.74 Aligned_cols=155 Identities=21% Similarity=0.167 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+|+++|.+|+|||||++++++....... ............... .....+.+|||||... +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 6999999999999999999976542211 111111111111221 1234789999999332 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+++++|++++|++++++-+... ..++..+..... . .|+++++||+|.........++ ...+....
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~~ 136 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNEE---------AEALAKRL 136 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 334678899999999984433333 234444443332 2 3999999999976431111111 23344445
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+.+++. .|++++.+++++++++..
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHH
Confidence 555555 778888999999998864
No 107
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.71 E-value=2.7e-16 Score=130.74 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=115.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc--cC--------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKA--SA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~--~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
+|+++|+.|+|||||+++|+....... +. ...+.|.......+. +++..+.+|||||..++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchH-
Confidence 489999999999999999985421100 00 011223333333333 788899999999987632
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 164 (301)
.+...++ ..+|++++|+|+..+.......+++.+... +. |+++++||+|.... ...+.
T Consensus 79 ------~~~~~~l----~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a---~~~~~---- 136 (237)
T cd04168 79 ------AEVERSL----SVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA---DLEKV---- 136 (237)
T ss_pred ------HHHHHHH----HHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC---CHHHH----
Confidence 2333333 455999999999977777667777766543 33 89999999997654 22333
Q ss_pred CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhHHHHHHHHHHhHHH
Q 022188 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKRE 244 (301)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (301)
+..+...++.+.+++..+..... . + ...+. ..+.++.+.+.+++.
T Consensus 137 ----~~~i~~~~~~~~~~~~~p~~~~~----------------~-------~------~~~~~--~~~l~e~vae~dd~l 181 (237)
T cd04168 137 ----YQEIKEKLSSDIVPMQKVGLAPN----------------I-------C------ETNEI--DDEFWETLAEGDDEL 181 (237)
T ss_pred ----HHHHHHHHCCCeEEEECCcEeee----------------e-------e------eeeec--cHHHHHHHhcCCHHH
Confidence 44555666777777664321100 0 0 00011 134466677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022188 245 ISKLMGQMQESYEDRIKRMAEM 266 (301)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~ 266 (301)
++++.++.+...++..+.+++.
T Consensus 182 ~e~yl~~~~~~~~el~~~l~~~ 203 (237)
T cd04168 182 LEKYLEGGPIEELELDNELSAR 203 (237)
T ss_pred HHHHhCCCCCCHHHHHHHHHHH
Confidence 8888876655555555555444
No 108
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.70 E-value=7.9e-16 Score=121.22 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||+++++.... ... ..+|...........++ ..+.+|||||..... ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEK---YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----------AMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-Ccc---cCCcchheEEEEEEECCEEEEEEEEECCCcccch-----------hHH
Confidence 5799999999999999999985433 111 11222211111122343 356799999965421 112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+.++|++++|+|.+++-+... ..++..+..... ....|++++.||+|+.........+ ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHH---------HHHHHHHh
Confidence 223567799999999874433333 334444443221 1123999999999976431011111 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+.+++. +||+++.++++++.++...+
T Consensus 137 ~~~~~~------~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFLE------TSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEEE------eeCCCCCCHHHHHHHHHHHh
Confidence 555555 78889999999999987654
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=6.6e-16 Score=123.95 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+++|++|+|||||++++++...... ....+.+............+..+.+|||||... +.....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHHHH
Confidence 36899999999999999999987654221 111111111111111112456889999999432 112223
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+..+|++++|+|++++-+... ..++..+..... ....|+++++||+|.... ...++. .. +..+.....
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~~-~~-----~~~~~~~~~ 141 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSEV-EK-----LLALHELSA 141 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHHH-HH-----HhCccccCC
Confidence 34567899999999984322222 223333332211 122499999999997543 222221 11 000000001
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+. ..++||+++.|+++++.+|.+.+.
T Consensus 142 ~~~~~---~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 142 STPWH---VQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred CCceE---EEEeecccCCCHHHHHHHHHHHHH
Confidence 11011 113788999999999999876653
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.70 E-value=9.9e-16 Score=120.24 Aligned_cols=158 Identities=19% Similarity=0.113 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|++|+|||||+|++++...........+.+......... .....+.+|||||.... ......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~-----------~~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERF-----------RTLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhh-----------hhhhHH
Confidence 379999999999999999999876522222111212111111111 12346899999995431 111222
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.++.+|++++|+|++++-+... ..++..+..... ....|++++.||+|..... ...++ ...+....+.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~~ 137 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHNM 137 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcCC
Confidence 3567899999999984433333 234444544432 2223899999999976331 11111 2233333444
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.++. .|+..+.++.++++.+..
T Consensus 138 ~~~~------~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 138 LFIE------TSAKTRDGVQQAFEELVE 159 (161)
T ss_pred EEEE------EecCCCCCHHHHHHHHHH
Confidence 5555 778888999999988764
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=3.9e-16 Score=122.57 Aligned_cols=158 Identities=13% Similarity=0.039 Sum_probs=90.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|.+|+|||||++++++...+..... +|.......+. ..+..+.+|||||.... ......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFE-KGNLSFTAFDMSGQGKY-----------RGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEE-ECCEEEEEEECCCCHhh-----------HHHHHHH
Confidence 489999999999999999998653222211 12211122222 56778999999995542 1222334
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-ccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+.++|++++|+|++++.+... ...+..+..... .....|+++++||+|.... ....+.... .. +. ....
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-l~--~~----~~~~ 136 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-LG--LE----NIKD 136 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-hC--Cc----cccC
Confidence 577899999999985443222 223333322110 0112399999999997644 222211111 00 00 0011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
.... ...+||+++.|+++++++|.
T Consensus 137 ~~~~---~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 137 KPWH---IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ceEE---EEEeeCCCCCchHHHHHHHh
Confidence 1111 12378899999999999975
No 112
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.70 E-value=8.8e-16 Score=124.42 Aligned_cols=117 Identities=16% Similarity=0.269 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-CCccccC-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
.++|+++|++|+|||||++++++. ..+.... ...+.+.......+. +++..+.+|||||..++
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~~-- 78 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHADF-- 78 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHHH--
Confidence 478999999999999999999863 1221110 012223333333333 56788999999996542
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
......++..+|++++|+|++++.......++..+... .. |+++++||+|+...
T Consensus 79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~---~~--p~iiv~NK~Dl~~~ 132 (194)
T cd01891 79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL---GL--KPIVVINKIDRPDA 132 (194)
T ss_pred ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc---CC--CEEEEEECCCCCCC
Confidence 22222345677999999999855444444444443321 22 89999999997643
No 113
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=2.3e-16 Score=123.42 Aligned_cols=145 Identities=17% Similarity=0.224 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|++|+|||||+|+|.|..... ..+... . +... .+|||||++... ......+. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v-----~-~~~~--~~iDtpG~~~~~---~~~~~~~~----~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV-----E-FNDK--GDIDTPGEYFSH---PRWYHALI----T 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEE-----E-ECCC--CcccCCccccCC---HHHHHHHH----H
Confidence 379999999999999999999865311 111111 1 2222 279999986532 12222222 2
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (301)
.+.++|++++|+|++...+.... .+... +. ..|+++++||+|.... ..+. +...+...+.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~ 121 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE 121 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence 35677999999999844332222 12222 11 1289999999997432 1211 2233333342
Q ss_pred -ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 -~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+++. +|++++.++++|++.+.+.+..
T Consensus 122 ~p~~~------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 122 EPIFE------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCEEE------EECCCccCHHHHHHHHHHhchh
Confidence 5555 7888999999999999887643
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=1.2e-15 Score=120.45 Aligned_cols=154 Identities=17% Similarity=0.147 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
+|+|+|.+|+|||||+|++.+...... .. .+......... ......+.+|||||..... ... ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP---RVLPEITIPADVTPERVPTTIVDTSSRPQDR-------ANL----AA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CC---CcccceEeeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence 699999999999999999997664222 11 11111111111 1234578899999965421 111 12
Q ss_pred cCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc---HHHHhcccCCchHHHHHH
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT---LEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~---~~~~~~~~~~~~l~~~~~ 174 (301)
.+..+|++++|+|++++.+-.. ..++..++.... . .|++++.||+|+... .. .++. +..+..
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~--~~~~~~~~~--------~~~~~~ 133 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDG--SSQAGLEEE--------MLPIMN 133 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccc--cchhHHHHH--------HHHHHH
Confidence 2467799999999985444443 235555655432 2 399999999998654 21 1111 112222
Q ss_pred HcC--CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
... ..++ .+|++++.++++++..+...+
T Consensus 134 ~~~~~~~~~------e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 134 EFREIETCV------ECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHhcccEEE------EeccccccCHHHHHHHHHHHh
Confidence 221 1333 378889999999999887654
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=2.4e-16 Score=123.64 Aligned_cols=157 Identities=17% Similarity=0.070 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|++|+|||||++++++....... +|...............+.+|||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI-----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc-----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 4899999999999999999987753221 1221112222223456899999999543 11222233
Q ss_pred CCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+..+|++++|+|++++.+-.. ..+...+..... ...|+++++||+|.... ...++.... .. +..+....+.
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~~~~ 137 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHI--KGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSDRDW 137 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhh--cCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCCCcE
Confidence 567799999999984432222 222222222111 12399999999997543 222221111 00 0001100011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.++ ++||+++.|+++++++|.+
T Consensus 138 ~~~------~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQ------PCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEE------ecccccCCChHHHHHHHhc
Confidence 122 3789999999999998853
No 116
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.69 E-value=1.7e-15 Score=120.10 Aligned_cols=162 Identities=17% Similarity=0.099 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||+|++++......... ............ ..+. .+.+|||||.... ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~-----------~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA--TIGADFLTKEVT-VDDKLVTLQIWDTAGQERF-----------QSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCC--ccceEEEEEEEE-ECCEEEEEEEEeCCChHHH-----------HhHH
Confidence 3799999999999999999998764222111 111111111122 3333 4679999995331 1122
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...+.++|++++++|++++.+.... .+...+...+.. ....|+++++||+|.........++ ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence 2345678999999999844332222 233333332221 1123999999999986321011111 223344
Q ss_pred HcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+ ..++. .|++++.|++++++++...+.+
T Consensus 138 ~~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYFE------TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 444 34554 7888899999999998876544
No 117
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=2e-15 Score=123.96 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=95.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||++++++... . ... ...........+. .++ ..+.+|||||...+. .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~-~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~-----------~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-E-DLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQERFR-----------T 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-C-CcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchhhH-----------H
Confidence 458999999999999999999998664 1 111 1111111112222 333 467999999965421 1
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHHH--HHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEET--AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....+++.+|++++|+|++++-+..... +...+.. +......|+++|.||+|+... ..+.... ...+.
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~~-------~~~~~ 147 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSREE-------GMALA 147 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHHH-------HHHHH
Confidence 1222356779999999998543333321 2222322 221122389999999997643 1111000 12223
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +|++.+.+++++++++...+..
T Consensus 148 ~~~~~~~~e------~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 148 KEHGCLFLE------CSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 333444444 7888899999999999877654
No 118
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=1.6e-15 Score=122.23 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-C--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
++|+|+|++|+|||||++++.+...... ...|............ + ..+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 3799999999999999999997764221 1223222222111122 2 3678999999433 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....+.++|++++|+|++++.+-... .++..+... ..+ .|++++.||.|+... ......+. ......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence 23346788999999999854444332 234444332 222 399999999997543 11000000 011233444
Q ss_pred HcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+. .++. +|++++.++.+++..+...+..
T Consensus 138 ~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAFAYLE------CSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCcEEEE------ccCCCCCCHHHHHHHHHHHHHh
Confidence 4444 4444 7888999999999998876543
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.69 E-value=1.4e-15 Score=120.44 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=93.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|++|+|||||++++++....+... ...+.......+. +.+ ..+.+|||||.... ...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~-----------~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTVE-IKGEKIKLQIWDTAGQERF-----------RSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcHHH-----------HHH
Confidence 3789999999999999999998655422211 1111112222222 444 35788999995331 111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+... ..++..+........ |++++.||+|.... ..+.... .+.+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~ 141 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKV--ITILVGNKIDLAER--REVSQQR-------AEEFSDA 141 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 1223567799999999984333222 234444554433333 89999999997644 2211111 1122222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
....++. +|+.++.++.++++.+...
T Consensus 142 ~~~~~~~------~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 142 QDMYYLE------TSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cCCeEEE------eeCCCCCCHHHHHHHHHHH
Confidence 2334444 7888899999999998754
No 120
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.69 E-value=1.8e-15 Score=121.19 Aligned_cols=161 Identities=15% Similarity=0.125 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.+|+++|..|+|||||++++++..... . ..+|..... ..+. .++ ..+.+|||+|... +..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~---~~~T~g~~~~~~~i~-~~~~~~~l~iwDt~G~~~-----------~~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-D---YIQTLGVNFMEKTIS-IRGTEITFSIWDLGGQRE-----------FIN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-C---CCCccceEEEEEEEE-ECCEEEEEEEEeCCCchh-----------HHH
Confidence 369999999999999999998765421 1 122222111 1222 344 4679999999443 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc-ccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~-~~~~~~~~~~~~~~l~~~~ 173 (301)
....+++++|++++|+|++++.+-.+ ..++..+....... .| ++|.||+|+..... ...+..... ...+.
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a 136 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYA 136 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHH
Confidence 33345788899999999985544444 24555554432222 25 67899999753200 011111111 23344
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +||+++.++++++.++...+..
T Consensus 137 ~~~~~~~~e------~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 137 KAMKAPLIF------CSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 444545554 7889999999999998876543
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.69 E-value=8.3e-16 Score=122.39 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=90.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+++|++|+|||||++++++...... .+|......... .++..+.+|||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIV-YKNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEE-ECCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987654221 122222222223 5677899999999643 112222
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.++.++|++++|+|++++-+... ...+..+....+ ....|+++++||+|.... ...++.... .. +.. .....
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~-l~--~~~-~~~~~ 150 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISES-LG--LTS-IRDHT 150 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHH-hC--ccc-ccCCc
Confidence 34567899999999984322211 222222221111 012399999999997643 222221111 00 000 00011
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
.+++ ++||+++.|+++++++|.
T Consensus 151 ~~~~------~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 151 WHIQ------GCCALTGEGLPEGLDWIA 172 (174)
T ss_pred eEEE------ecccCCCCCHHHHHHHHh
Confidence 1222 378889999999999985
No 122
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=5.5e-16 Score=122.67 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=89.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+++|++|+|||||++++....... . .+|+........ .....+.+|||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~----~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-T----IPTVGFNVETVT-YKNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-c----cCCcccceEEEE-ECCEEEEEEECCCCHH-----------HHHHHH
Confidence 4789999999999999999998654321 1 112222222222 4567899999999543 222223
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH--
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-- 174 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~-- 174 (301)
.++.++|++++|+|++++.+-.+ ....+.+.+... ...|++++.||+|+... ...++... .+.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~~ 138 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQE---------KLGLT 138 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHH---------HcCCC
Confidence 35678899999999985432222 122222222111 12399999999997543 22221111 110
Q ss_pred HcC-CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
... ..+. ..++||+++.|+.+++.+|.
T Consensus 139 ~~~~~~~~----~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 139 RIRDRNWY----VQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred ccCCCcEE----EEEeeCCCCCChHHHHHHHh
Confidence 001 1111 11379999999999999885
No 123
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=1.2e-15 Score=121.52 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+++|.+|+|||||++++..... .. ..+|......... ..+..+.+|||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VT----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CC----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence 48899999999999999999964332 11 1123222222223 4567899999999544 222233
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
.++.++|++++|+|++++-+-.+ ...+..+ ....... .|++|+.||.|+... ...++.... +. +...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRD--AVILVFANKQDLPDA--MKAAEITEK-----LG--LHSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcC--CcEEEEEeCcCcccC--CCHHHHHHH-----hC--cccc
Confidence 34678899999999984432222 2233322 2211112 389999999997544 222221111 00 0001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+.+. ..++||+++.|+.+++++|...+
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence 111111 11378899999999999987653
No 124
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.69 E-value=1.2e-15 Score=120.10 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+++|.+|+|||||++++.+........ .|.. ....... .++. .+.+|||||...+.. +
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~--------~--- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEIE-VDSSPSVLEILDTAGTEQFAS--------M--- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEEE-ECCEEEEEEEEECCCcccccc--------h---
Confidence 689999999999999999998765532221 1211 1111122 3343 567899999654321 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++.++|++++|+|.+++-+-.+ ..++..+..... ....|++++.||+|+... ..+.... ...+...
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 1123567799999999985433333 344455554422 122399999999997543 1111100 1222333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+..+++ +|++++.++.+++.++.+.
T Consensus 136 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 136 WGCPFME------TSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred hCCEEEE------ecCCCCCCHHHHHHHHHHh
Confidence 3444444 7888899999999988653
No 125
>PTZ00369 Ras-like protein; Provisional
Probab=99.69 E-value=1.9e-15 Score=121.95 Aligned_cols=161 Identities=20% Similarity=0.150 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|.+|+|||||++++.+........ +|...........++ ..+.+|||||..++. ..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-----------AM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence 4899999999999999999999765422211 111111111111233 357789999976532 11
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+++++|++++|+|++++-+-.. ..++..+...... ...|++++.||+|.... ..+.... ...+...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~ 139 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS 139 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 2224567799999999985443333 3344444443221 12389999999997533 1111100 1223333
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+.+++. +||+++.|+.+++.++...+..
T Consensus 140 ~~~~~~e------~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 140 FGIPFLE------TSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred hCCEEEE------eeCCCCCCHHHHHHHHHHHHHH
Confidence 4445554 7888999999999999766543
No 126
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.69 E-value=1.1e-15 Score=123.72 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|.+|+|||||++++++....... ...|...... .....++. .+.+|||||.... ...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----------~~~ 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGP---YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY-----------EAM 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcC---cccceeeEEEEEEEEECCEEEEEEEEECCCchhh-----------hhh
Confidence 37999999999999999999976642211 1222221111 11123443 4569999995432 111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....+.++|++++|+|++++-+-.. ..++..+..... . .|+++|.||+|+... ......+. ......+...
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~ 138 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-H--CKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADE 138 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-C--CCEEEEEEccccccc--ccccCccC---HHHHHHHHHH
Confidence 1223567899999999984433222 345555544321 2 399999999997543 10000000 0012333344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. .|++++.++++|++++.+.+.
T Consensus 139 ~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 139 IKAQHFE------TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4444554 788889999999999986653
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=4.4e-16 Score=125.06 Aligned_cols=163 Identities=7% Similarity=-0.049 Sum_probs=92.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+++|.+|+|||||+|++.+...... .+|......... .++..+.++||||... .....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~-----------~~~~~ 78 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELA-IGNIKFTTFDLGGHQQ-----------ARRLW 78 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence 348899999999999999999998654211 112211222222 5677899999999543 11222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL- 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~- 175 (301)
..++.++|++++|+|++++-+-.. ...+..+.+... ....|++++.||+|.... ...++.... .. +......
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-l~--l~~~~~~~ 152 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEE-LATVPFLILGNKIDAPYA--ASEDELRYA-LG--LTNTTGSK 152 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--CCHHHHHHH-cC--CCcccccc
Confidence 345678899999999984311111 122222221100 012399999999997543 222222211 10 0000000
Q ss_pred --cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 176 --CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+.+. .....+|+.++.|+++++++|..
T Consensus 153 ~~~~~~~---~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 153 GKVGVRP---LEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccCCce---eEEEEeecccCCChHHHHHHHHh
Confidence 01111 11234788899999999999864
No 128
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.68 E-value=1.6e-15 Score=120.29 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++........ ...........+. .++ ..+.+|||||.... .. ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~-------~~---~~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVE-IDGERIKVQLWDTAGQERF-------RK---SMV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEE-ECCeEEEEEEEeCCChHHH-------HH---hhH
Confidence 689999999999999999998765421111 1111111111222 334 47899999994331 11 122
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+++.+|++++|+|++++-+.... .++..+..... ....|++++.||+|+... ..+.... ...+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~~-------~~~~~~~~ 139 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ--IQVPTDL-------AQRFADAH 139 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh--cCCCHHH-------HHHHHHHc
Confidence 3346788999999999855444443 34444444321 122399999999997543 1111100 12233333
Q ss_pred CCceEEecCCCcccccc---hhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~---~~~~~~L~~~l~~~~ 208 (301)
...++. +|+++ +.++.+++..+...+
T Consensus 140 ~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 SMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 444555 56665 677888887776543
No 129
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.68 E-value=6.3e-16 Score=121.20 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|.+|+|||||++++...... .. .+|......... .....+.+|||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~----~pt~g~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-cc----CCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 6999999999999999999654431 21 112222222222 4567899999999543 22223345
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+.++|++++|+|++++.+-.+ ...+..+ ..... ...|++++.||.|+... ....+.... +. +.....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDEL--RDAVLLVFANKQDLPNA--MSAAEVTDK-----LG--LHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHh--cCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--ccccCC
Confidence 678899999999984322222 2222222 21111 12399999999997543 222221111 00 000011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
+... ..++||+++.|+++++++|.
T Consensus 134 ~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 1111 12378999999999999874
No 130
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=3.8e-16 Score=128.65 Aligned_cols=194 Identities=18% Similarity=0.191 Sum_probs=121.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH-HHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKEIVKCL 97 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~~~ 97 (301)
..+|+|+|.||+|||||.|.+.|..++ ..+....|++.+...+...+...+.++||||+......... ....+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~--~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVS--AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccc--cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 479999999999999999999999994 44556677777777666677889999999999875543221 112222233
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH---HHHhccc-CCchHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHE-CPKPLKEIL 173 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~-~~~~l~~~~ 173 (301)
+.+...+|++++|+|+++.-.....+.+..+...... |.+++.||+|..... ..+ .+.+.+. ......++.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k-~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQK-RLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----Cceeeccchhcchhh-hHHhhhHHhccccccchhhhhHH
Confidence 3455678999999999853344445667777766443 899999999976541 011 1111110 000001111
Q ss_pred HHcCC-c----------eEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHH
Q 022188 174 QLCDN-R----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (301)
Q Consensus 174 ~~~~~-~----------~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~ 220 (301)
+++.. + +-.|......|+..|.|+++|.+++....+. +...|+.++
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i 281 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADI 281 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCccc
Confidence 11110 0 1011222237889999999999999887765 223355444
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.68 E-value=9.2e-16 Score=120.06 Aligned_cols=155 Identities=14% Similarity=0.052 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|++|+|||||++++++... ... ..|......... ..+..+.+|||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEE-ECCEEEEEEECCCChhh-----------HHHHHHH
Confidence 489999999999999999998863 211 122222222223 45778999999996542 1112223
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 178 (301)
+..+|++++|+|++.+-+... ...+..+..... ....|++++.||+|.... ...++.... +... ......
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~~~~~~~~ 135 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLEKILGRRW 135 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChhhccCCcE
Confidence 466799999999984322221 222222222111 112399999999998754 322222111 1000 000011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+++. .|++++.|+++++++|..
T Consensus 136 ~~~~------~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQP------CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EEEE------eeCCCCCCHHHHHHHHhh
Confidence 2333 688889999999988753
No 132
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=1.5e-15 Score=121.79 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+++|++|+|||||++++........ .+|......... ..+..+.+|||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~-~~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVE-YKNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEE-ECCEEEEEEECCCCHh-----------HHHHH
Confidence 347899999999999999999965433111 122222222222 4667899999999533 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++.++|++|+|+|++++-+-.+ ....+.+.+... ...|++++.||.|+.+. ...++.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 334678899999999984322222 112222222211 12389999999997543 222221111 00 011
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..+.+. ...+||+++.|+++++++|.+.+.
T Consensus 148 ~~~~~~~---~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VRQRNWY---IQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ccCCcEE---EEeeeCCCCCCHHHHHHHHHHHHH
Confidence 1111111 113688899999999999987654
No 133
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=1.1e-14 Score=120.33 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+++|..|+|||||++++++.... .. ..+|...........++ ..+.||||||-.. +..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~---y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP-ET---YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC-CC---cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence 3478999999999999999999876542 21 12222211111111333 4679999999433 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhc---ccC-CchH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG---HEC-PKPL 169 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~---~~~-~~~l 169 (301)
....++.++|++++|+|++++-+-.. ..|+..+....+ .. |+++|.||+|+.... ..+.+... ... ....
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~--piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-ST--RILLIGCKTDLRTDL-STLMELSNQKQAPISYEQG 152 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccccccc-chhhhhccccCCcCCHHHH
Confidence 23345789999999999996555443 356666665543 23 899999999974321 01100000 000 0113
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchh-HHHHHHHHHHHHHh
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIV 209 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~ 209 (301)
..+....+. .++. +||+++. ++++++..+.....
T Consensus 153 ~~~a~~~~~~~~~E------tSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 153 CALAKQLGAEVYLE------CSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHHHHcCCCEEEE------ccCCcCCcCHHHHHHHHHHHHH
Confidence 455555565 3554 8999886 79999999876653
No 134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=2.5e-15 Score=121.29 Aligned_cols=165 Identities=18% Similarity=0.121 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
++|+|+|.+|+|||||++++++....... .+|...........++ ..+.+|||||.... ....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-----------DRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChhc-----------cccc
Confidence 47999999999999999999976642211 1222111111111233 46899999995432 1112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPLK 170 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l~ 170 (301)
..++..+|++++|++++++-+-.. ..++..+..... . .|+++|.||+|+... ....+.+... .. ....
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~--~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-G--VKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence 234678899999999985443333 235666655432 2 399999999997654 2222111100 00 0012
Q ss_pred HHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+....+ ..++. +||+++.++++++.++...+..
T Consensus 141 ~~~~~~~~~~~~e------~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 141 AVAKRINALRYLE------CSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHcCCCEEEE------ccCCcCCCHHHHHHHHHHHHhc
Confidence 2233333 23444 8899999999999999877643
No 135
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=2.7e-15 Score=123.07 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|.+|+|||||++++++....... ............+...++ ..+.+|||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 68999999999999999999986642221 111111211112221123 4688999999432 11222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++-+-.. ..++..+.+.... ...|+++|.||.|+... ..+.. .....+....
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~-------~~~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTR-------EEAEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCH-------HHHHHHHHHh
Confidence 234677899999999985433333 3344444443322 12268899999997643 11110 0122344445
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. +|++++.++.+++++|...+..
T Consensus 140 ~~~~~e------~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 140 GMKYIE------TSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 545554 7888899999999999876543
No 136
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.68 E-value=2.9e-15 Score=118.74 Aligned_cols=159 Identities=18% Similarity=0.074 Sum_probs=93.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+++|++|+|||||++++++....+.... ..+.......+. .++ ..+.+|||||... +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLE-VDGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEE-ECCeEEEEEEEeCCChHH-----------HHH
Confidence 458999999999999999999997664222111 111111111222 333 3568899999322 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
.....++.+|++++|++++++-+... ..+...+...... ....|++++.||+|+.... ....+ +..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTEE---------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHHH---------HHHH
Confidence 23334678899999999984433332 2333333332211 1123999999999975320 11111 3334
Q ss_pred HHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
....+. .++. .|++++.++.+++..+.+
T Consensus 140 ~~~~~~~~~~e------~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPYFE------TSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeEEE------EECCCCCCHHHHHHHHHh
Confidence 444442 3443 788889999999988754
No 137
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.68 E-value=6.1e-16 Score=121.12 Aligned_cols=155 Identities=14% Similarity=0.021 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+|+|++|+|||||++++........ .+|......... ..+..+.+|||||.... ......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGQTSI-----------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEE-ECCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 489999999999999999976554221 112222222222 45678999999996541 1222234
Q ss_pred CCCccEEEEEEecCCCCCHH--HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+.++|++++|+|++++.+.. ...+...+..... ...|+++++||+|..+. ....+.... .. .. .....+.
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~~~ 135 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-LG--LS-ELKDRTW 135 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-hC--cc-ccCCCcE
Confidence 56789999999998432222 1222223322111 12399999999997644 222221111 00 00 0000011
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+++ ++|++++.+++++++++.+
T Consensus 136 ~~~------~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIF------KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEE------EeeccCCCCHHHHHHHHhc
Confidence 233 4788999999999998753
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=8.6e-16 Score=122.10 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=91.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+|+|++|+|||||+++|.+....... .|......... ..+..+.+|||||... +...+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~-----~t~g~~~~~i~-~~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHIT-----PTQGFNIKTVQ-SDGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccC-----CCCCcceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence 3589999999999999999999987542111 11111112222 4578899999999532 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHH-HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVH-RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+..+|++++|+|+++.-+... ...+. .+..... ...|+++++||+|.... ....+.... +. + ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~~ 144 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLATA--APAEEIAEA-----LN-L-HD 144 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-cc
Confidence 334567799999999983221111 22222 2222111 12399999999997654 333332221 00 0 00
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
...+...+ ...|++++.|+++++++|.
T Consensus 145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 145 LRDRTWHI---QACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred cCCCeEEE---EEeECCCCCCHHHHHHHHh
Confidence 11111111 2478899999999999985
No 139
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=4.2e-15 Score=115.82 Aligned_cols=162 Identities=23% Similarity=0.200 Sum_probs=96.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (301)
Q Consensus 24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
|+|++|+|||||+|+|++....... ...+.+...............+.+|||||+.+.............. ....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~----~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR----VLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH----HHHh
Confidence 5899999999999999987764322 1223333333333332236789999999998865443322122222 2456
Q ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEe
Q 022188 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (301)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (301)
+|++++|+++..........+...... . . .|+++++||+|.... ......... ...........+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-~--~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-R--G--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-c--C--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence 699999999995555555442222221 1 2 299999999998765 333332210 000011111233444
Q ss_pred cCCCcccccchhHHHHHHHHHHHH
Q 022188 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.++.++.++.++++++...
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 5667778999999988653
No 140
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=2.4e-15 Score=139.48 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=102.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+++|++|+|||||+++|.+..+.... ..+.|.....+.+.+.++..+++|||||..++. ...
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hHH
Confidence 4478999999999999999999987653222 234555555544442234489999999976532 111
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
...+..+|++++|++++++........+..+.. .+ . |+++++||+|........+...+.. ..-....++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~--v--PiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN--V--PIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC--C--CEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 223567799999999987776666666655443 23 2 9999999999754311222222221 110111122
Q ss_pred C--ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 178 N--RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 178 ~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
. +++ +.||+++.|+++|++++..
T Consensus 223 ~~~~~v------~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIFV------PVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceEE------EEECCCCCChHHHHHhhhh
Confidence 1 233 3899999999999998854
No 141
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=3.3e-15 Score=119.60 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+++|..|+|||||++++...... .. .+|.......+. ..+..+.+|||||... +....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~----~pt~g~~~~~~~-~~~~~~~i~D~~Gq~~-----------~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVE-YKNISFTVWDVGGQDK-----------IRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cc----cCCcceeEEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence 3479999999999999999999854432 11 122222222222 4677899999999422 22223
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++.++|++++|+|++++-+-.+ ....+...+... ...|++|+.||.|.... ...++... .+.-
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~l 145 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLGL 145 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhCc
Confidence 345678899999999984332222 122233222110 12389999999997654 33222221 1110
Q ss_pred --cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 --CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+... ..++||+++.|+.+++++|...+
T Consensus 146 ~~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 146 HSLRQRHWY---IQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred cccCCCceE---EEeccCCCCCCHHHHHHHHHHHH
Confidence 0111111 11368899999999999997655
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.67 E-value=7.2e-16 Score=118.48 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|++|+|||||+|++++.... ...|.. .. +.. .+|||||.... .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VE-YND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EE-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 6999999999999999999987641 111211 11 222 68999996321 11223333334
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-c
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 179 (301)
++++|++++|+|++++.+.....++. .++. |+++++||+|+.... ...+. ...+....+. +
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~~----p~ilv~NK~Dl~~~~-~~~~~---------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFVK----PVIGLVTKIDLAEAD-VDIER---------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hccC----CeEEEEEeeccCCcc-cCHHH---------HHHHHHHcCCCc
Confidence 68889999999998555543333222 2222 899999999975420 11111 2233333343 3
Q ss_pred eEEecCCCcccccchhHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l 204 (301)
++. .|++++.+++++++++
T Consensus 122 ~~~------~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 122 IFE------ISSVDEQGLEALVDYL 140 (142)
T ss_pred EEE------EecCCCCCHHHHHHHH
Confidence 444 7888899999999886
No 143
>PLN03108 Rab family protein; Provisional
Probab=99.67 E-value=3.6e-15 Score=122.31 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=94.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||++++++...........+.+... .... .++ ..+.+|||||... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~--~~i~-~~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMIT-IDNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEE--EEEE-ECCEEEEEEEEeCCCcHH-----------HHHH
Confidence 3789999999999999999999775422221111111111 1112 333 3578999999432 1111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
....+..+|++++|+|++++-+... ..++..+....... .|++++.||+|+........++ ...+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence 2233567899999999984433333 23444444433322 3999999999976431011111 2233334
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+..++. +|++++.++++++.++...+
T Consensus 141 ~~~~~~e------~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFME------ASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4445554 78888899999998886554
No 144
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=1.5e-15 Score=122.61 Aligned_cols=167 Identities=9% Similarity=-0.028 Sum_probs=92.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||++++.+...... .+|.......+. +++..+.+|||||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~-~~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELT-IGNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEE-ECCEEEEEEECCCCHH-----------HHHHH
Confidence 358899999999999999999998664211 112222222233 5678899999999433 11122
Q ss_pred hccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCC-ccccHHHHhcccCCchHH---HH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLK---EI 172 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~l~---~~ 172 (301)
..+++++|++++|+|+++.-+-. ....+..+..... ....|+++++||+|+... ....+.+++.. ...... .+
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~-~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEE-LANVPFLILGNKIDLPGAVSEEELRQALGL-YGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCcc-ccCCCEEEEEeCCCCCCCcCHHHHHHHhCc-ccccccccccc
Confidence 23456779999999998332111 1222222222111 122499999999997643 11122222211 000000 00
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..... +... ...+||+++.|+.++++++...
T Consensus 159 ~~~~~-~~~~---~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGI-RPIE---VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCc-eeEE---EEEeEecCCCChHHHHHHHHhh
Confidence 00001 1111 1247999999999999998654
No 145
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.67 E-value=3.2e-15 Score=139.66 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.|+++|+.++|||||+++|+|...-... ....+.|.......+...++..+.+|||||..+ +...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 6899999999999999999985421111 112356666554444434667889999999532 2233333
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC--
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-- 177 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 177 (301)
...++|++++|+|++.++...+...+..+.. ++.. ++++++||+|..+. ..++..... +..++...+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4567799999999997788888877776654 3432 46899999998754 444444443 555554443
Q ss_pred -CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.++++ +|+.++.|+++|++.|......
T Consensus 140 ~~~ii~------VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 EAKLFV------TAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCcEEE------EeCCCCCCCHHHHHHHHHhhcc
Confidence 23444 7888899999999999876543
No 146
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=6.4e-15 Score=117.31 Aligned_cols=161 Identities=19% Similarity=0.132 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++..... .. ...+|...........++ ..+.+|||||..... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~---~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PS---EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CC---CCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-----------hhh
Confidence 6799999999999999999997654 21 122233222211112344 467899999965421 111
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC-----CchHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKPLK 170 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~l~ 170 (301)
..++.++|++++|+|++++-+-... .++..+....+ . .|+++|.||.|+... ..+.+.+.... .+...
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence 2346788999999999855444432 35555554432 2 399999999997543 22222121100 00112
Q ss_pred HHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+....+ ..++. +||+++.|+.++++.+..
T Consensus 142 ~~a~~~~~~~~~e------~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 142 KLARDLKAVKYVE------CSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHhCCcEEEE------ecCCCCCCHHHHHHHHHH
Confidence 2333334 34555 889999999999988765
No 147
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.67 E-value=4.7e-15 Score=117.92 Aligned_cols=162 Identities=21% Similarity=0.160 Sum_probs=96.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
|+|+|.+|+|||||++++++....... ..+...........++. .+.+|||||..... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEVDGKPVELGLWDTAGQEDYD-----------RLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEECCEEEEEEEEECCCCcccc-----------hhchh
Confidence 589999999999999999986642211 12222222111223443 57899999965421 11222
Q ss_pred cCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc---C-CchHHHHH
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLKEIL 173 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~---~-~~~l~~~~ 173 (301)
.+.++|++++|+|++++-+-.. ..++..+....+ . .|++++.||+|+.... ....++.... . ......+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-N--TPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 4678899999999985433333 235555555433 2 3999999999976431 1121111100 0 01123344
Q ss_pred HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+. .++. +|++++.+++++++.+.+.+
T Consensus 142 ~~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKYLE------CSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEEEE------ecCCCCCCHHHHHHHHHHHh
Confidence 44453 5555 78889999999999987654
No 148
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=1.6e-15 Score=119.69 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+|+|+|++|+|||||++++++......- ..|. ....... ..++. .+.+|||||...... .....+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~------~~~~~~- 68 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEY----DPNLESLYSRQV-TIDGEQVSLEILDTAGQQQADT------EQLERS- 68 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc----CCChHHhceEEE-EECCEEEEEEEEECCCCccccc------chHHHH-
Confidence 4899999999999999999865431111 1111 1111112 23444 578999999764110 011122
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
++.+|++++|+|++++-+-.. ..++..+..........|+++|.||+|.... ..+... ....+....
T Consensus 69 ---~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~ 136 (165)
T cd04146 69 ---IRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASEL 136 (165)
T ss_pred ---HHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHc
Confidence 345699999999985433333 3345555553210112399999999996533 111110 022333444
Q ss_pred CCceEEecCCCcccccch-hHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~ 208 (301)
+..++. +|++.+ .++.+++..+.+.+
T Consensus 137 ~~~~~e------~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 137 GCLFFE------VSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence 545554 777777 58999999887644
No 149
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.67 E-value=2.9e-15 Score=118.46 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|++|||||||++.+.+.. .... .+|.......+. ..+..+.+|||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLR-LDKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEE-ECCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 48999999999999999999862 2221 112211222233 4677899999999432 22222345
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+..+|++++|+|++++.+-.+ ..++..+..... ....|+++|.||.|+... ....+.+.. .. +..+....+.+
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~-~~~~piliv~NK~Dl~~~--~~~~~i~~~-~~--l~~~~~~~~~~ 137 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPR-VSGKPILVLANKQDKKNA--LLGADVIEY-LS--LEKLVNENKSL 137 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCcc-ccCCcEEEEEeCCCCcCC--CCHHHHHHh-cC--cccccCCCCce
Confidence 678899999999984433332 233333332211 012499999999998655 333333332 10 12222222222
Q ss_pred eEEecCCCcccccch------hHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGT------EQVRQLLSLVN 205 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~------~~~~~L~~~l~ 205 (301)
+.. ..+||.++ .|+.+.++||.
T Consensus 138 ~~~----~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 138 CHI----EPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEE----EEeEceeCCCCccccCHHHHHHHHh
Confidence 222 12566666 78999999984
No 150
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=1.2e-15 Score=119.05 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=88.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
|+|+|++|+|||||+|+|++....... .+|......... .++..+.+|||||... +......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 899999999999999999987652221 222222222222 4557889999999543 112222335
Q ss_pred CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (301)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (301)
..+|++++|+|++...+... ...+..+..... ....|+++++||+|.... ....+.... .. +... .....++
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~--~~~~~~~~~-~~--~~~~-~~~~~~~ 138 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA--LSVDELIEQ-MN--LKSI-TDREVSC 138 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC--cCHHHHHHH-hC--cccc-cCCceEE
Confidence 67799999999983221111 122222221110 012389999999997654 333222221 00 0000 0001122
Q ss_pred EEecCCCcccccchhHHHHHHHHHHH
Q 022188 181 VLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+. .|++++.+++++++++..
T Consensus 139 ~~------~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 139 YS------ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EE------EEeccCCChHHHHHHHhh
Confidence 33 688889999999998854
No 151
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.66 E-value=5.4e-15 Score=116.22 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++....... ..++..........++ ..+.+|||||.... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc----CCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHH
Confidence 37999999999999999999976642211 1111111111122333 46889999995542 1112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
.......+++++|+++.++-+-.. ..++..+..... ....|+++++||+|..........+ ...+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 223456699999999874322222 233333333311 1223999999999976421011111 22333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+.+++. .|+.++.|+++++..+...+
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 136 GVPYVE------TSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCeEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 555555 78889999999999987654
No 152
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.66 E-value=1.7e-13 Score=116.37 Aligned_cols=151 Identities=25% Similarity=0.393 Sum_probs=103.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCC--CCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc--
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGS--SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS-- 86 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~--~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~-- 86 (301)
-..+|.++|++|.|||||+|+|++....... ... ...+.......... .++ ..+++||||||+|.....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 3579999999999999999999988442221 111 12333333333222 223 367999999999975432
Q ss_pred -----HHHHHHHHHHHh----------ccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 87 -----EFVGKEIVKCLG----------MAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 87 -----~~~~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
..+..++..++. ....++|++||.+.++ ++++..+...++.|.+. + ++|-|+.|+|.+
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~----v--NlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR----V--NLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc----c--CeeeeeeccccC
Confidence 122233333332 1135789999999876 78999998888777654 2 799999999999
Q ss_pred CCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188 151 EDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (301)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (301)
.. .++..+... ++..+..+..+++
T Consensus 176 T~--~El~~~K~~-----I~~~i~~~nI~vf 199 (373)
T COG5019 176 TD--DELAEFKER-----IREDLEQYNIPVF 199 (373)
T ss_pred CH--HHHHHHHHH-----HHHHHHHhCCcee
Confidence 88 777777766 7777777777766
No 153
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4.4e-15 Score=120.72 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+|+++|.+|+|||||++++++...... ...|.. .....+. +.+ ..+.+|||||..... ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~-----------~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK----YRRTVEEMHRKEYE-VGGVSLTLDILDTSGSYSFP-----------AMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc----CCCchhhheeEEEE-ECCEEEEEEEEECCCchhhh-----------HHH
Confidence 489999999999999999998764221 111211 1111122 344 467899999965521 111
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++.+-.. ..++..+.+... ....|+++++||+|..... ..+... .. ........
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~~-----~~~~~~~~ 136 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-DA-----LSTVELDW 136 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-HH-----HHHHHhhc
Confidence 224567899999999984433333 233344444322 1224999999999976420 111110 00 11111122
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..++. .|++++.++.++++++...+.
T Consensus 137 ~~~~~~------~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVE------TSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEE------ecCCCCCCHHHHHHHHHHHhh
Confidence 233444 788899999999999987664
No 154
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=5.6e-15 Score=137.64 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC--ccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+++|+.++|||||+|+|+|... ++. ....+.|.......+. .++..+.+|||||..+ +...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe~-----------f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHEK-----------FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEE-eCCEEEEEEECCCHHH-----------HHHHHH
Confidence 699999999999999999998542 111 1123456555544444 4568899999999422 333333
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 177 (301)
..+.++|++++|+|++.+........+..+.. ++.+ ++++++||+|..+. ..++..... +..++...+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi~---~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGIP---HTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 44567899999999997676777666666544 3442 49999999998755 434333333 445554432
Q ss_pred ---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 ---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.++++ +|+.++.|+++++..+...+..
T Consensus 138 ~~~~~ii~------vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 138 LKNAKIFK------TSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCcEEE------EeCCCCCCchhHHHHHHHHHHh
Confidence 23444 7888899999999988777654
No 155
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=2.3e-15 Score=142.89 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|+.|+|||||+++|.+..+... ...+.|.....+.+. +++..++||||||..++.. ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F~~-------m~~--- 355 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVE-TNGGKITFLDTPGHEAFTA-------MRA--- 355 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEE-ECCEEEEEEECCCCccchh-------HHH---
Confidence 447899999999999999999987665322 223455555555544 6678999999999776421 122
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+..+|++|+|++++++........+..+... + + |+++++||+|+...+...+...+.. ...+....+
T Consensus 356 -rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-~--v--PiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 356 -RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-G--V--PIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred -hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-C--C--cEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 224566999999999877777776666655432 3 2 8999999999854311112111111 001111222
Q ss_pred --CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.++++ +|+.++.|+++|+++|..
T Consensus 425 ~~vp~vp------vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIFVP------VSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceEEE------EeCCCCCCchHHHHhhhh
Confidence 22333 788999999999999864
No 156
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=3.4e-15 Score=118.28 Aligned_cols=161 Identities=19% Similarity=0.094 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++++........ .+............ ...+.+|||||...... ..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV----PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence 479999999999999999999876521111 11111111111122 34689999999765311 11
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh----cccCCchHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE 171 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~----~~~~~~~l~~ 171 (301)
...++.+|++++|+|.+++.+... ..++..+....+ ..|+++|+||+|+... ....... ..-.......
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 123467799999999984333222 334445544433 2399999999998755 2211100 0000001223
Q ss_pred HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+....+. .++. .|++.+.++.++++.+.+
T Consensus 141 ~~~~~~~~~~~~------~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAKEIGAIGYME------CSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHhCCeEEEE------eecCCCCCHHHHHHHHhh
Confidence 3333343 4444 788888999999988753
No 157
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=1e-14 Score=119.73 Aligned_cols=113 Identities=22% Similarity=0.153 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|.+|+|||||++++++...... ..|....... ..+....+.+|||||..... .+ ...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~-~~~~~~~l~iwDt~G~e~~~--------~l---~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYL-KQWGPYNISIWDTAGREQFH--------GL---GSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEE-EEeeEEEEEEEeCCCcccch--------hh---HHH
Confidence 3699999999999999999997765221 1222222222 22445678999999965421 11 122
Q ss_pred cCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
+++.+|++|+|+|++++.+-... .++..+.+....+. |+++|.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~--piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDC--LFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccccc
Confidence 36788999999999955444442 34444444333333 8999999999764
No 158
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.66 E-value=6.5e-15 Score=121.62 Aligned_cols=161 Identities=20% Similarity=0.097 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.+|+++|.+|+|||||++++++.... .......+.........+. .....+.+|||||... . +...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~i~Dt~G~~~------~----~~~~-- 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-GEESTLVVIDHWEQEM------W----TEDS-- 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-CEEEEEEEEeCCCcch------H----HHhH--
Confidence 37999999999999999999765542 1111111101111111111 2335689999999651 1 1111
Q ss_pred ccCC-CccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ..+.... ...+....
T Consensus 68 -~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~--~~v~~~~-------~~~~a~~~ 136 (221)
T cd04148 68 -CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARS--REVSVQE-------GRACAVVF 136 (221)
T ss_pred -HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhcccc--ceecHHH-------HHHHHHHc
Confidence 223 7799999999985433332 334444444321 123499999999997644 1111100 12233334
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. +|+..+.+++++++++...+..
T Consensus 137 ~~~~~e------~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFIE------TSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence 445554 7888999999999999877653
No 159
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.65 E-value=1.2e-14 Score=116.20 Aligned_cols=165 Identities=15% Similarity=0.096 Sum_probs=101.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+++|.+|+|||||++++.+...... ..+|...........++ ..+.+|||+|... +..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~~ 68 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YDN 68 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hHh
Confidence 347899999999999999999987654221 12222221111112333 3679999999432 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---c-CCchH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPL 169 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~-~~~~l 169 (301)
....+++++|++++|+|++++.+-.. ..++..+....+ . .|+++|.||.|+.... ..+.+.... . .....
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 144 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG 144 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence 23345788999999999996655444 356666666543 2 3999999999975321 001000000 0 00113
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHH
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~ 207 (301)
..+....+. .++. +||+++.+ +++++..+...
T Consensus 145 ~~~a~~~~~~~~~E------~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 145 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHcCCCEEEE------CCcCCCCCCHHHHHHHHHHH
Confidence 445555564 5665 89999998 99999887653
No 160
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.65 E-value=1.2e-14 Score=120.62 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=58.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+|+|++|+|||||+|+|+|..... + .....|...... ...+++..+.+|||||+.+..........++. ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-~-~~~~tT~~~~~g-~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-A-AYEFTTLTCVPG-VLEYKGAKIQLLDLPGIIEGAADGKGRGRQVI----AV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-c-CCCCccccceEE-EEEECCeEEEEEECCCcccccccchhHHHHHH----Hh
Confidence 68999999999999999999876421 1 122333333322 23367889999999998764322222222222 24
Q ss_pred CCCccEEEEEEecCC
Q 022188 101 KDGIHAFLVVFSVTN 115 (301)
Q Consensus 101 ~~~~~~il~v~~~~~ 115 (301)
++.+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567799999999873
No 161
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=8.6e-15 Score=114.53 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+|+|++|+|||||++++++... .... ..++..........+ ...+.+||+||.... .....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-----------SAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEECCEEEEEEEEECCChHHH-----------HHHHH
Confidence 489999999999999999998763 2221 112221111112233 246789999995441 11112
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+...|++++|+|.+++-+..+ ..++..+...... ...|+++++||+|.........+ . ...+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~-~--------~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE-E--------GKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH-H--------HHHHHHHcC
Confidence 23456699999999984333233 3344445444331 12399999999997653111111 1 233334444
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+++. .|++.+.++.+++++|..
T Consensus 136 ~~~~~------~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 136 CPFIE------TSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CcEEE------eccCCCCCHHHHHHHHHh
Confidence 44444 788888999999998865
No 162
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.65 E-value=1e-14 Score=116.72 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||++++++....... ..|...........++ ..+.+|||||..+. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY----YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY-----------SILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc----CcchhhhEEEEEEECCEEEEEEEEECCChHhh-----------HHHH
Confidence 68999999999999999999976542111 1111111111112333 35689999996542 1111
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+...+++++++|.+++.+... ..++..+.+..+. ...|++++.||+|.... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence 223456799999999984333322 3333444443221 22389999999997533 111110 022333444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+.+++. .|++++.++.+++.++.+.+...
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 137 GAAFLE------SSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 444554 78888899999999998776543
No 163
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.65 E-value=2e-14 Score=116.12 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|..|+|||||++++........ ..+|...........++ ..+.+|||||... +....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRLR 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence 7899999999999999999986553211 12232221111111333 4678999999433 22222
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CCchHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE 171 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~l~~ 171 (301)
..+++++|++++|+|++++-+-... .++..+..... .. |+++|.||.|+.... ...+...... .......
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NV--PILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CC--CEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence 3457889999999999855444433 24444444322 33 999999999975431 1111111100 0011233
Q ss_pred HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+....+. .++. +||+++.++++++.++.+.+.
T Consensus 145 ~a~~~~~~~~~e------~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 145 LAKQIHAVKYLE------CSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHcCCcEEEE------eCCCCCCCHHHHHHHHHHHHh
Confidence 4444442 4554 788899999999999987653
No 164
>PRK09866 hypothetical protein; Provisional
Probab=99.64 E-value=1.9e-13 Score=124.45 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=76.1
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..++++||||+..... ..+.+.+... ...+|+++||+|+...++..+...++.++.. +.. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 5678999999987432 2233344443 4566999999999866788888888877764 321 28999999999
Q ss_pred CCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
..+......+..... +...+..... .|....++||..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 864311112221111 2222222111 1222334899999999999998865
No 165
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.64 E-value=5.3e-15 Score=139.28 Aligned_cols=162 Identities=14% Similarity=0.190 Sum_probs=101.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-e--CCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
..++|+|+|++|+|||||+++|.+....... ..+.|.....+.... . .+..+++|||||... +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 4579999999999999999999976553221 223444333333322 1 357899999999543 22
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
......+..+|++++|++++++........+..+... + . |+++++||+|........+...+.. ..-+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-~--i--PiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-N--V--PIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-C--c--eEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 2222234566999999999877777766666665432 3 2 9999999999764311112222211 000111
Q ss_pred HcC--CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+ .+++ +.||.++.|+++|++++....
T Consensus 380 ~~g~~vpvv------~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMI------PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEE------EEECCCCCCHHHHHHhhhhhh
Confidence 122 2333 388899999999999987643
No 166
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=1.8e-14 Score=115.01 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++.+... +.. ..+|...........++ ..+.+|||||... +....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~---~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PET---YVPTVFENYTASFEIDEQRIELSLWDTSGSPY-----------YDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCC---cCCceEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhcc
Confidence 5799999999999999999997654 221 12222211111111333 4678999999433 12222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCCchHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECPKPLKE 171 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~~~l~~ 171 (301)
..+++++|++++|+|.+++-+-.. ..++..+.+..+ .. |+++|.||.|+.... ......-.. -..+....
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~--~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NT--KVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CC--CEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence 335788999999999986555544 356666666543 23 999999999975320 011000000 00011334
Q ss_pred HHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHH
Q 022188 172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (301)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~ 207 (301)
+....+. .++. +||+++.+ +.+++..+...
T Consensus 143 ~a~~~~~~~~~E------~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQLGAEIYLE------CSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHhCCCEEEE------CccCcCCcCHHHHHHHHHHH
Confidence 5555554 4554 88888885 99999887663
No 167
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=4.4e-15 Score=114.51 Aligned_cols=164 Identities=22% Similarity=0.199 Sum_probs=111.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|.+|+|||||+-+.......+...+..+..-........ .....+.+|||.|... +.....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQER-----------y~slap 72 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQER-----------YHSLAP 72 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccc-----------cccccc
Confidence 3789999999999999998887555433233333332222222211 1235677999999443 333445
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.+|++++++|+|.|+++.-+-.. +.|++.|+...+.++ -+.++.||+|+...-....++ ...+.+.-|
T Consensus 73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~~g 141 (200)
T KOG0092|consen 73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAESQG 141 (200)
T ss_pred ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHhcC
Confidence 67999999999999994433333 668888887766543 456789999987531122222 344556667
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
..++. .|++++.++.+|+..|.+.++..
T Consensus 142 ll~~E------TSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 142 LLFFE------TSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred CEEEE------EecccccCHHHHHHHHHHhccCc
Confidence 77776 89999999999999999988764
No 168
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.64 E-value=5.2e-15 Score=125.12 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF--KASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (301)
.++|+|+|+.|+|||||+++|+..... ..+.. ..+.+.......+. +++..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCC
Confidence 478999999999999999999843211 00000 01223333333444 7889999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~ 158 (301)
..++. .+....+ ..+|++++|+|++.+.......+++.+.. .+. |+++++||+|.... ...
T Consensus 81 ~~df~-------~~~~~~l----~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~~----P~iivvNK~D~~~a---~~~ 141 (267)
T cd04169 81 HEDFS-------EDTYRTL----TAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RGI----PIITFINKLDREGR---DPL 141 (267)
T ss_pred chHHH-------HHHHHHH----HHCCEEEEEEECCCCccHHHHHHHHHHHh-cCC----CEEEEEECCccCCC---CHH
Confidence 76531 2233333 45699999999986676665566555443 232 89999999997654 111
Q ss_pred HHhcccCCchHHHHHHHcCCceEEecCC
Q 022188 159 DFLGHECPKPLKEILQLCDNRCVLFDNK 186 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (301)
.. +..+...++.+.+++.-+
T Consensus 142 ~~--------~~~l~~~l~~~~~~~~~P 161 (267)
T cd04169 142 EL--------LDEIEEELGIDCTPLTWP 161 (267)
T ss_pred HH--------HHHHHHHHCCCceeEEec
Confidence 21 233445556666665433
No 169
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.63 E-value=3e-14 Score=113.34 Aligned_cols=161 Identities=17% Similarity=0.081 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe-EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|.+|+|||||+.++++.... .. ..+|..... .... .++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~-~~---~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP-GE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY-----------DRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-Cc---CCCcceeeeEEEEE-ECCEEEEEEEEECCCchhh-----------hhh
Confidence 57999999999999999999875532 11 112221111 1122 334 46789999995432 122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CCchHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~~~l~ 170 (301)
...++.++|++|+|+|++++-+-... .++..+....+ + .|+++|.||.|+.... ...+...... ......
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 23346788999999999854443332 35555555432 2 3999999999975321 1111111100 001122
Q ss_pred HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+....+. .++. +||+++.+++++++.+.+
T Consensus 142 ~~~~~~~~~~~~e------~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKYLE------CSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEEEE------ecccccCCHHHHHHHHHH
Confidence 33444443 4444 889999999999988764
No 170
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=1.7e-14 Score=114.11 Aligned_cols=157 Identities=21% Similarity=0.174 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||++++++......- ..|...........++ ..+.+|||||...... ..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-----------MR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccchh-----------hh
Confidence 57999999999999999999976642221 1122111111111333 4678999999665321 11
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...+..++++++|++.+++-+-.. ..+...+...... ...|++++.||.|..........+ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 223456799999999984333332 3344444443221 123999999999975431011111 12233333
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+ .+++. +||+.+.++.++++++...
T Consensus 137 ~~~~~~~------~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFYE------TSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEEE------eeCCCCCCHHHHHHHHHHH
Confidence 3 33444 7888999999999998654
No 171
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.63 E-value=2.4e-14 Score=113.87 Aligned_cols=164 Identities=20% Similarity=0.166 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|.+|+|||||+.++..... ... ..+|...........++ ..+.+|||+|..... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~---~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~-----------~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTD---YIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN-----------RLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCC---CCCcceeeeEEEEEECCEEEEEEEEECCCCcccc-----------ccc
Confidence 5799999999999999999997654 221 12222211111111333 467999999965432 112
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH-HHH-hcccCCchHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDF-LGHECPKPLKEIL 173 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~-~~~-~~~~~~~~l~~~~ 173 (301)
..+++++|++|+|+|.+++-+-... .++..+....+ +. |+++|.||+|+.+.. ... .+. ...-..+....+.
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NV--PIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEELR 142 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHHH
Confidence 2356788999999999966655543 46666665433 33 999999999975320 000 000 0000001123444
Q ss_pred HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+. .++. +||+++.++++++..+.+.+
T Consensus 143 ~~~~~~~~~E------~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYIE------CSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEEE------CCCCcccCHHHHHHHHHHHH
Confidence 44454 2444 89999999999999988764
No 172
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.63 E-value=1e-14 Score=123.75 Aligned_cols=153 Identities=23% Similarity=0.292 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCcHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSEFVG 90 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~~ 90 (301)
++|+|+|.+|+|||||+|+|++......... ....+.......... .++ ..+++||||||++.... ...+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n-~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDN-SDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTH-CHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccc-hhhh
Confidence 7899999999999999999999876544310 111222222222221 233 36799999999985432 2222
Q ss_pred HHH--------HHHHhc---------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 91 KEI--------VKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 91 ~~~--------~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+.+ ..++.. ...++|++||+++++ +++...+...++.|... + |+|-|+.|+|.+..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH
Confidence 223 333321 124689999999987 68888888887777654 3 89999999999877
Q ss_pred ccccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (301)
.++..+... +...+...+.+++.|...
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 777776666 777788888887776654
No 173
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.5e-14 Score=113.68 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+++|.+|+|||+++-++.......+-.+..+..-. ...+. .++. .+.+|||.|- +.+..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk--~kti~-l~g~~i~lQiWDtaGQ-----------erf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFK--IKTIE-LDGKKIKLQIWDTAGQ-----------ERFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEE--EEEEE-eCCeEEEEEEEEcccc-----------hhHHH
Confidence 4579999999999999999999866542222222222222 22222 3333 6799999992 23445
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...+++++++++++|+|+++.-+-+. ..|++.+.+....++ |.++|.||+|.... ..+.. +.-..+..
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~lA~ 145 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEALAR 145 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHHHHH
Confidence 55667899999999999995444444 568889998876666 99999999997653 11111 11345667
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..|.+.+. +||+.+.++.+.+-.+...+.
T Consensus 146 e~G~~F~E------tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 146 EYGIKFFE------TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence 77888877 899999999998887765543
No 174
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=7e-15 Score=133.09 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=97.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC---------------CCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~~ 67 (301)
.+..+|+++|+.++|||||+++|+....... +.. ..+.|.......+. ++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TD 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cC
Confidence 3458999999999999999999984432110 100 23555555555444 67
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
+..+.+|||||..++. ..+. .....+|++++|+|+++ .+.......+..+.. ++.. |+++++|
T Consensus 83 ~~~i~liDtpG~~~~~-------~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~---~iivviN 147 (425)
T PRK12317 83 KYYFTIVDCPGHRDFV-------KNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGIN---QLIVAIN 147 (425)
T ss_pred CeEEEEEECCCcccch-------hhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCC---eEEEEEE
Confidence 8899999999965421 1222 22456799999999986 565555555555543 3432 7999999
Q ss_pred CCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 199 (301)
|+|+.......+...... +..++...+. .+++ +|+.++.++.+
T Consensus 148 K~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~~~ii~------iSA~~g~gi~~ 195 (425)
T PRK12317 148 KMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDDIPFIP------VSAFEGDNVVK 195 (425)
T ss_pred ccccccccHHHHHHHHHH-----HHHHHHhhCCCcCcceEEE------eecccCCCccc
Confidence 999864311223333333 4555554443 2333 67777777765
No 175
>CHL00071 tufA elongation factor Tu
Probab=99.62 E-value=1.4e-14 Score=130.15 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=90.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..+.++|+++|++++|||||+|+|++....... ....+.|.......+. +++..+.++||||..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChHH
Confidence 445689999999999999999999975321100 0013444444333333 5677899999999432
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 160 (301)
+...+......+|++++|+|+...+...+...+..+... +. | +++++||+|.... ....+.
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~ 149 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLEL 149 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHH
Confidence 222223334567999999999977888888877776543 44 5 7789999998754 333232
Q ss_pred h-cccCCchHHHHHHHcC
Q 022188 161 L-GHECPKPLKEILQLCD 177 (301)
Q Consensus 161 ~-~~~~~~~l~~~~~~~~ 177 (301)
+ .+ +..++...+
T Consensus 150 ~~~~-----l~~~l~~~~ 162 (409)
T CHL00071 150 VELE-----VRELLSKYD 162 (409)
T ss_pred HHHH-----HHHHHHHhC
Confidence 2 23 566666554
No 176
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=6.8e-15 Score=140.39 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=83.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c-CC-------------CCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA--S-AG-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~-~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
..+.++|+|+|+.|+|||||+|+|+....... + .. ..+.|.......+. +++..+++|||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCC
Confidence 34578999999999999999999974321100 0 00 12445555455444 78899999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
.++. .+...++ ..+|++++|+|+..+....+...+..+... +. |+++++||+|....
T Consensus 86 ~~~~-------~~~~~~l----~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~----p~ivviNK~D~~~~ 142 (689)
T TIGR00484 86 VDFT-------VEVERSL----RVLDGAVAVLDAVGGVQPQSETVWRQANRY-EV----PRIAFVNKMDKTGA 142 (689)
T ss_pred cchh-------HHHHHHH----HHhCEEEEEEeCCCCCChhHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 7742 1233333 345999999999877777777777765543 32 89999999998754
No 177
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.62 E-value=3e-14 Score=113.38 Aligned_cols=161 Identities=18% Similarity=0.139 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe-EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|++|+|||||++++.+......- .+|..... ..+. .++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIE-VDGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEE-ECCEEEEEEEEeCCCchhh-----------hhc
Confidence 57999999999999999999976542211 11221111 1122 333 36789999995442 111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc--CC---chH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE--CP---KPL 169 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~--~~---~~l 169 (301)
....+.++|++++|++++++-+-.. ..++..+....+ . .|++++.||+|+... ....+.+... .. ...
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 1224577899999999984432222 224444444322 2 399999999997643 2221111110 00 011
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+.+....+. .++. +||+.+.++++++.++...
T Consensus 141 ~~~~~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGYME------CSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEEEE------eccccCcCHHHHHHHHHHH
Confidence 223333332 3443 7888999999999998654
No 178
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.62 E-value=1.2e-14 Score=119.88 Aligned_cols=165 Identities=19% Similarity=0.143 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCC-------------CCcceeeE--e---------------------EEEE
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-------------SGVTKTCE--M---------------------KTTV 64 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-------------~~~t~~~~--~---------------------~~~~ 64 (301)
+|+++|+.++|||||+++++.... ..+... .+.|.... . ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 489999999999999999985322 111000 01110000 0 0112
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
...+..++++||||..++ .......+. ...+|++++|+|+..+++..+...+.++... +. |+++++
T Consensus 80 ~~~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvv 145 (224)
T cd04165 80 EKSSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVV 145 (224)
T ss_pred eeCCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEE
Confidence 245678999999995431 222332222 1367999999999878888888888887764 43 899999
Q ss_pred eCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEE--------------------ecCCCcccccchhHHHHHHHHH
Q 022188 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL--------------------FDNKTKDEAKGTEQVRQLLSLV 204 (301)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~L~~~l 204 (301)
||+|.... ..+...+.. +...+...+..-.+ ..+....|+.++.|++.|...|
T Consensus 146 NK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 146 TKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred ECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 99998755 445554444 44444322211101 1122336888899999999888
Q ss_pred HHH
Q 022188 205 NSV 207 (301)
Q Consensus 205 ~~~ 207 (301)
..+
T Consensus 219 ~~l 221 (224)
T cd04165 219 NLL 221 (224)
T ss_pred Hhc
Confidence 543
No 179
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.62 E-value=1.9e-14 Score=116.70 Aligned_cols=150 Identities=15% Similarity=0.051 Sum_probs=94.1
Q ss_pred EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 25 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|..|+|||||+++++.... ... ...|..... ..+. .+ ...+.+|||||... +......+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~---~~~Tig~~~~~~~~~-~~~~~~~l~iwDt~G~e~-----------~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKK---YVATLGVEVHPLVFH-TNRGPIRFNVWDTAGQEK-----------FGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCC---CCCceeEEEEEEEEE-ECCEEEEEEEEECCCchh-----------hhhhhHHH
Confidence 69999999999999986543 211 122332222 1122 22 35789999999543 22222335
Q ss_pred CCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
++++|++++|+|++++.+-.. ..++..+..... .+ |+++|.||+|+... ....+ ...+....+..
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~--piilvgNK~Dl~~~--~v~~~---------~~~~~~~~~~~ 130 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NI--PIVLCGNKVDVKDR--KVKAK---------SITFHRKKNLQ 130 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CC--CEEEEEECcccccc--cCCHH---------HHHHHHHcCCE
Confidence 778899999999996554443 345555665432 33 99999999997432 11011 11223333445
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
++. +||+++.++.+++.++...+..
T Consensus 131 ~~e------~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 131 YYD------ISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 554 8899999999999999876644
No 180
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.62 E-value=2.9e-14 Score=119.37 Aligned_cols=158 Identities=20% Similarity=0.166 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+|+|..|+|||||++++++.... .. ...|.. .....+. .++ ..+.+|||||..+.. ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~---y~pTi~d~~~k~~~-i~~~~~~l~I~Dt~G~~~~~-----------~~ 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQ---YTPTIEDFHRKLYS-IRGEVYQLDILDTSGNHPFP-----------AM 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC-CC---CCCChhHhEEEEEE-ECCEEEEEEEEECCCChhhh-----------HH
Confidence 36999999999999999999876542 21 112221 1111112 344 467899999965421 11
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-------CccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-------GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 168 (301)
...++..+|++|+|+|++++-+-.. ..++..+.+.. ......|++++.||+|+........++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 1123457799999999985433333 23444443321 011234999999999976421011111
Q ss_pred HHHHHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 169 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+..++... +..++. +||+++.++++++.+|....
T Consensus 136 i~~~~~~~~~~~~~e------vSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 136 VEQLVGGDENCAYFE------VSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHhcCCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 22232211 233444 78889999999999998765
No 181
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=3.6e-14 Score=112.84 Aligned_cols=162 Identities=18% Similarity=0.082 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++++.+....... .+|...........++. .+.+|||||...... ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------LR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------cc
Confidence 36999999999999999999876642221 12222111111113333 467999999655321 11
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPLK 170 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l~ 170 (301)
...+...|++++|++..++-+.... .++..+... ... .|++++.||+|+... ......+... .. ....
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence 2246788999999999854333332 345555443 222 399999999997543 1111111000 00 0112
Q ss_pred HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+....+. .++. +||+++.|++++++.+...
T Consensus 141 ~~~~~~~~~~~~e------~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYVE------CSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEEE------ecCCcCCCHHHHHHHHHHH
Confidence 33333443 3443 7889999999999887653
No 182
>PRK12736 elongation factor Tu; Reviewed
Probab=99.61 E-value=4.3e-14 Score=126.38 Aligned_cols=164 Identities=16% Similarity=0.219 Sum_probs=103.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
.+.++|+++|+.++|||||+++|++...-.. .....+.|.......+. .++..+.+|||||..+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHHH-
Confidence 3458999999999999999999987321000 00123455555444333 4567889999999432
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
+...+......+|++++|+|+..+....+...+..+... +. | +++++||+|.... ..+.+.+
T Consensus 88 ----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 88 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence 222222233567999999999877777877777776554 44 5 6789999998643 3333322
Q ss_pred cccCCchHHHHHHHcCC-----ceEEecCCCcccccch--------hHHHHHHHHHHHHHh
Q 022188 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~L~~~l~~~~~ 209 (301)
.. .+..++...+. ++++ .|+.++ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 15555555543 3444 444443 357788888877765
No 183
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=5.8e-15 Score=117.51 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=99.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+++|+.||||||+++.|....... ..+|.......+. ..+..+.+||.+|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEecccccc-----------cccc
Confidence 355899999999999999999998654322 2234444444444 5788999999999432 2334
Q ss_pred HhccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+..++.++|+++||+|.++.-.-. ....+..+..... -...|++++.||.|.... ...++.... .. +..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~~~--~~~~~i~~~-l~--l~~l~-- 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLPDA--MSEEEIKEY-LG--LEKLK-- 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTSTTS--STHHHHHHH-TT--GGGTT--
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcchhh-cccceEEEEeccccccCc--chhhHHHhh-hh--hhhcc--
Confidence 445678899999999998322212 2223332222100 123499999999997655 333332221 10 11111
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
...++..+ .+++.++.|+.+.++||.+.
T Consensus 147 ~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12233332 36778899999999999764
No 184
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.61 E-value=2.1e-14 Score=114.16 Aligned_cols=161 Identities=20% Similarity=0.152 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+++++|++|+|||||++++.+... ... ..+|...........++ ..+.+|||||.... ....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTE---YVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-----------DKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCceeeeeeEEEEECCEEEEEEEEECCCChhh-----------cccc
Confidence 3689999999999999999986553 221 12222111111112333 46788999996442 1112
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-CC---chHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CP---KPLKE 171 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-~~---~~l~~ 171 (301)
..++.++|++++|+|++++-+-.. ..++..+..... + .|++++.||+|+.... ..+....... .. .....
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 334678899999999985544333 345555554322 2 3999999999976431 1111111000 00 01223
Q ss_pred HHHHcCC-ceEEecCCCcccccchhHHHHHHHHHH
Q 022188 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
+....+. .++. +|++++.+++++++.+.
T Consensus 142 ~a~~~~~~~~~e------~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYIE------CSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEEE------EeCCCCCCHHHHHHHHH
Confidence 3333443 4454 88899999999998764
No 185
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.61 E-value=2.1e-14 Score=133.56 Aligned_cols=160 Identities=17% Similarity=0.297 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA-FKA-S------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (301)
++|+|+|+.++|||||+++|+...- +.. + ....+.|.......+. |++..+++|||||..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHH---
Confidence 6899999999999999999985321 111 0 0112456665555555 78899999999997663
Q ss_pred cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 165 (301)
..++..++ ..+|++++|+|+..+.....+.++..+... +. |+++++||+|.... ...+.+.+
T Consensus 78 ----~~ev~~~l----~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEVERVL----GMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE-- 139 (594)
T ss_pred ----HHHHHHHH----HhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence 22344444 355999999999867777777777776653 33 89999999997543 22222222
Q ss_pred CchHHHHHHHcC-------CceEEecCCCcccccchh----------HHHHHHHHHHHHHhh
Q 022188 166 PKPLKEILQLCD-------NRCVLFDNKTKDEAKGTE----------QVRQLLSLVNSVIVQ 210 (301)
Q Consensus 166 ~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------~~~~L~~~l~~~~~~ 210 (301)
+..++..++ .+++. .|++.+. ++..|++.+...++.
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~------~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVY------ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ---HHHHHHhhccccccccCcEEe------chhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 333332222 22222 4555553 788999998887764
No 186
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.61 E-value=4.8e-14 Score=109.65 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||+|++++.. ++.... ...+.......+. .++ ..+.+|||||..+... ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~~~----~~~------ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIE-EDGKTYKFNLLDTAGQEDYRA----IRR------ 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEE-ECCEEEEEEEEECCCcccchH----HHH------
Confidence 689999999999999999999887 333221 2223333222223 455 6789999999554211 111
Q ss_pred hccCCCccEEEEEEecCCC-CC--HHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNR-FS--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~-~~--~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.....++.+++++|.... .+ .........+...... ..|+++++||+|.... . .... ....+.
T Consensus 69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~ 134 (161)
T TIGR00231 69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA 134 (161)
T ss_pred -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence 112234666666666522 11 1112333333333221 2399999999998654 2 1111 222232
Q ss_pred HcC-CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
..+ .++++ .++..+.++.+++++|.
T Consensus 135 ~~~~~~~~~------~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEPIIP------LSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCceEE------eecCCCCCHHHHHHHhh
Confidence 222 23343 77888899999998874
No 187
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.9e-14 Score=113.95 Aligned_cols=158 Identities=13% Similarity=-0.014 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
+..+|+++|.+|+|||||++++++....+.. ..+|.. ....... .++ ..+.+|||+|-.....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~---~~~T~~~~~~~~~~~-~~~~~~~l~~~d~~g~~~~~~--------- 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA---YSPTIKPRYAVNTVE-VYGQEKYLILREVGEDEVAIL--------- 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCccc---CCCccCcceEEEEEE-ECCeEEEEEEEecCCcccccc---------
Confidence 3478999999999999999999987652011 122221 1111222 334 4678899999554211
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++.++|++++|+|++++-+-.. ...++... ......|+++|+||+|+... ... .... ...+.
T Consensus 70 --~~~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~ 135 (169)
T cd01892 70 --LNDAELAACDVACLVYDSSDPKSFSY--CAEVYKKY-FMLGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFC 135 (169)
T ss_pred --cchhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHh-ccCCCCeEEEEEEccccccc--ccc--cccC-----HHHHH
Confidence 11223567899999999984422111 12222222 11112399999999997533 111 0000 22333
Q ss_pred HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+. .++. .|+..+.+++++++.+.+.+
T Consensus 136 ~~~~~~~~~~------~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 136 RKLGLPPPLH------FSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred HHcCCCCCEE------EEeccCccHHHHHHHHHHHh
Confidence 33332 2233 78888899999999987765
No 188
>PLN03127 Elongation factor Tu; Provisional
Probab=99.61 E-value=2.2e-14 Score=129.48 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=103.0
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCC------CCc-c---c----cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGR------KAF-K---A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~------~~~-~---~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..+.++|+++|+.++|||||+++|++. ... . . .....+.|.......+. .++..++++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccc
Confidence 345689999999999999999999743 100 0 0 01113556665544444 5667899999999754
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 160 (301)
+ ...+... ...+|++++|+|+..+....++..+..+... +. | +++++||+|.... ..+.+.
T Consensus 137 f-------~~~~~~g----~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~~ 198 (447)
T PLN03127 137 Y-------VKNMITG----AAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLEL 198 (447)
T ss_pred h-------HHHHHHH----HhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHHH
Confidence 1 1222222 2357999999999877788887777776654 43 6 5788999998754 333333
Q ss_pred hcccCCchHHHHHHHcCCc--eEEecCCCcccccch-------hHHHHHHHHHHHHHh
Q 022188 161 LGHECPKPLKEILQLCDNR--CVLFDNKTKDEAKGT-------EQVRQLLSLVNSVIV 209 (301)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~L~~~l~~~~~ 209 (301)
+.. .++.++..++.. .+++-+....++..+ .++..|++.+...++
T Consensus 199 i~~----~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 199 VEM----ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHH----HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 321 145555544321 222211111122222 236788888877664
No 189
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=2.4e-14 Score=136.50 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=85.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHh---CCCCccccC-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
....++|+|+|+.++|||||+|+|+ |........ ...+.|.......+. |.+..++++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCc
Confidence 3457899999999999999999996 322110000 122455555455444 78899999999997
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
.++ ..++...+. .+|++++|+|+..+....+...+..+... +. |+++++||+|....
T Consensus 86 ~~f-------~~ev~~al~----~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIEVERSLR----VLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHHHHHHHH----HcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 652 123444444 44999999999888888888888877654 43 88999999998755
No 190
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=1.3e-13 Score=113.38 Aligned_cols=163 Identities=16% Similarity=0.094 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|.+|+|||||++++++..... . ..+|...........++ ..+.+|||+|... +....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~---y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG-S---YVPTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-c---cCCccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence 579999999999999999999765422 1 11222211111111334 3678899999432 22223
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc---C-CchHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE---C-PKPLKE 171 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~---~-~~~l~~ 171 (301)
..+++++|++|+|+|++++-+-... .+...+..... .. |++||.||+|+.... ..+....... . ...-..
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~--piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~ 142 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NA--KVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV 142 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CC--CEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence 3457899999999999955433332 23333433322 23 999999999975431 1111110000 0 011233
Q ss_pred HHHHcCC-ceEEecCCCcccccchh-HHHHHHHHHHHH
Q 022188 172 ILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSV 207 (301)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~ 207 (301)
+....+. .++. +||+++. ++.++|......
T Consensus 143 ~ak~~~~~~y~E------~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 143 LAKQVGAVSYVE------CSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHcCCCEEEE------cCCCcCCcCHHHHHHHHHHH
Confidence 4445554 5555 7888766 499999887664
No 191
>PRK12735 elongation factor Tu; Reviewed
Probab=99.60 E-value=5.7e-14 Score=125.71 Aligned_cols=164 Identities=18% Similarity=0.222 Sum_probs=100.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc--------ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK--------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
.+..+|+++|+.++|||||+++|++... +. ......+.|.......+. +++..+.++||||..+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~~- 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHAD- 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHHH-
Confidence 3458999999999999999999996211 00 000123455554443333 4667899999999532
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
+...+......+|++++|+|+..+......+.+..+.. .+. | +++++||+|+... ....+.+
T Consensus 88 ----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~ 150 (396)
T PRK12735 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV 150 (396)
T ss_pred ----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHH
Confidence 33333334557799999999986677777776666553 343 5 4468999998643 2222222
Q ss_pred cccCCchHHHHHHHcCC-----ceEEecCCCcccccch----------hHHHHHHHHHHHHHh
Q 022188 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV 209 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~L~~~l~~~~~ 209 (301)
.. .+..++..++. ++++ .|+..+ .++..|++.+...++
T Consensus 151 ~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 151 EM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 21 15555655442 2233 333333 356788888877654
No 192
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=2.3e-13 Score=127.00 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=97.4
Q ss_pred cCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCcc
Q 022188 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (301)
Q Consensus 26 G~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (301)
|.+|+|||||+|+++|... ..+ ...+.|......... +++..+.+|||||.++......+ +.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence 8999999999999999875 222 233455544443333 57778999999999875432211 1222211 1134679
Q ss_pred EEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecC
Q 022188 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (301)
Q Consensus 106 ~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 185 (301)
++++|+|++ .+... ......+.+ .+ .|+++++||+|..+. ..+... .+.+....+.++++
T Consensus 75 vvI~VvDat-~ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pvv~--- 134 (591)
T TIGR00437 75 LVVNVVDAS-NLERN-LYLTLQLLE---LG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPVVP--- 134 (591)
T ss_pred EEEEEecCC-cchhh-HHHHHHHHh---cC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCEEE---
Confidence 999999998 33322 222222222 12 299999999997643 112111 23444555666666
Q ss_pred CCcccccchhHHHHHHHHHHHHH
Q 022188 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 186 ~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.|++++.|++++++.+.+..
T Consensus 135 ---tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 ---TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---EECCCCCCHHHHHHHHHHHh
Confidence 78889999999999997764
No 193
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.60 E-value=2.4e-14 Score=133.50 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc------cccC-------CCCCcceeeEeEEEEee--CC--eeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF------KASA-------GSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~------~~~~-------~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~~ 81 (301)
.++|+|+|+.|+|||||+++|+..... .... ...+.|.......+.+. ++ ..+.+|||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 589999999999999999999864210 0100 01244554444333321 22 5789999999776
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
+. .++..+ +..+|++++|+|++++.+......+..+... +. |+++++||+|+... ..+...
T Consensus 83 F~-------~~v~~~----l~~aD~aILVvDat~g~~~qt~~~~~~~~~~---~i--piIiViNKiDl~~~---~~~~~~ 143 (595)
T TIGR01393 83 FS-------YEVSRS----LAACEGALLLVDAAQGIEAQTLANVYLALEN---DL--EIIPVINKIDLPSA---DPERVK 143 (595)
T ss_pred HH-------HHHHHH----HHhCCEEEEEecCCCCCCHhHHHHHHHHHHc---CC--CEEEEEECcCCCcc---CHHHHH
Confidence 31 233333 3456999999999977777665544433321 22 89999999997533 112111
Q ss_pred cccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. +... ++... ......||+++.|+++|++.+...++.
T Consensus 144 ~e-----l~~~---lg~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 144 KE-----IEEV---IGLDA---SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HH-----HHHH---hCCCc---ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 11 2222 22210 011237999999999999999887764
No 194
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.6e-15 Score=127.68 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=113.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+..|+|+|+||+|||||+|+|+.... +.+++.+.|++.........+|.+++|+||.|+.... ++.+...=+...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~--~~~iE~~gI~rA 342 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES--NDGIEALGIERA 342 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEecccccccc--CChhHHHhHHHH
Confidence 458899999999999999999999988 7777778888877766666999999999999998721 112222222222
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHh---hCcc----ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKN----VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~---~~~~----~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
......+|++++|+|+....+.++....+.+... +... ..++++++.||.|.... +.++... ..
T Consensus 343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~----~~~~~~~-----~~ 413 (531)
T KOG1191|consen 343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK----IPEMTKI-----PV 413 (531)
T ss_pred HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc----cccccCC-----ce
Confidence 3345677999999999544444554444444332 1111 12589999999997644 1111110 00
Q ss_pred HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+....+... |......++.++.++..|.+.+...+..
T Consensus 414 ~~~~~~~~~~--~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 414 VYPSAEGRSV--FPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eccccccCcc--cceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 0111111111 1112236778889999999998876543
No 195
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=2.5e-14 Score=133.59 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=101.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--c-----------CCCCCcceeeEeEEEEee----CCeeEEEEeCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--S-----------AGSSGVTKTCEMKTTVLK----DGQVVNVIDTPGL 79 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~-----------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~ 79 (301)
...++|+|+|+.++|||||+.+|+....... . ....+.|.......+.+. .+..+++|||||.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3468999999999999999999975321000 0 001244444433333321 2467899999997
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 159 (301)
.++. .++..++ ..+|++++|+|++.+....+...+..+... + . |+++++||+|.... ..+.
T Consensus 85 ~dF~-------~~v~~sl----~~aD~aILVVDas~gv~~qt~~~~~~~~~~-~--l--piIvViNKiDl~~a---~~~~ 145 (600)
T PRK05433 85 VDFS-------YEVSRSL----AACEGALLVVDASQGVEAQTLANVYLALEN-D--L--EIIPVLNKIDLPAA---DPER 145 (600)
T ss_pred HHHH-------HHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-C--C--CEEEEEECCCCCcc---cHHH
Confidence 7642 2333333 455999999999977777665555544332 2 2 89999999997543 1222
Q ss_pred HhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 160 FLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.... +... ++. .++ ..|+.++.|+.+|++++...++.
T Consensus 146 v~~e-----i~~~---lg~~~~~vi------~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 146 VKQE-----IEDV---IGIDASDAV------LVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHH-----HHHH---hCCCcceEE------EEecCCCCCHHHHHHHHHHhCcc
Confidence 1121 2222 222 133 37889999999999999887764
No 196
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.59 E-value=2.2e-14 Score=118.97 Aligned_cols=161 Identities=20% Similarity=0.206 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
.|++||.||||||||+|+|+.... ........|.........+.+...+++-|.||+......+.-++..+.+.+..+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 589999999999999999998775 222223344444444444344556999999999987766766777788877666
Q ss_pred CCCccEEEEEEecCCCC--CHHH-HH-HHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 101 KDGIHAFLVVFSVTNRF--SQEE-ET-AVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~--~~~~-~~-~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+.++||+|++... ++-+ .. .+..+. .+... ..+|.++|.||+|..+. -.++ +..+...
T Consensus 276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe-~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~~ 338 (366)
T KOG1489|consen 276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELE-LYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAKR 338 (366)
T ss_pred ----ceEEEEEECCCcccCCHHHHHHHHHHHHH-HHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHHH
Confidence 9999999999331 2222 22 222222 22222 34589999999997433 1111 2344444
Q ss_pred cCCc-eEEecCCCcccccchhHHHHHHHHHHH
Q 022188 176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.... +++ .||+.+.++.+|+..+..
T Consensus 339 lq~~~V~p------vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 LQNPHVVP------VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCCCcEEE------eeeccccchHHHHHHHhh
Confidence 4444 455 788888899998887654
No 197
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=6.5e-14 Score=133.63 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=84.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--cc-C-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--AS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (301)
...++|+|+|+.++|||||+++|+...-.. .+ . ...+.|.......+. |++..+++|||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHH
Confidence 456899999999999999999997421100 00 0 123455555555544 788999999999975
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
++ ..+...++. .+|++++|+|+..+....+...+..+... +. |+++++||+|....
T Consensus 85 ~f-------~~e~~~al~----~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DF-------TIEVERSLR----VLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA 140 (691)
T ss_pred HH-------HHHHHHHHH----HhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 52 223444443 45999999999888888888777776553 33 89999999998754
No 198
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.8e-13 Score=105.77 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEe--EEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
..+|+++|..++||||||++.+-... ..+...|.-... ..+. ..+ ..+.+|||.| .+.+.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f----d~~YqATIGiDFlskt~~-l~d~~vrLQlWDTAG-----------QERFr 85 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF----DNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAG-----------QERFR 85 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh----cccccceeeeEEEEEEEE-EcCcEEEEEEEeccc-----------HHHHh
Confidence 47899999999999999999984443 222233332222 2222 333 4679999999 23445
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
..+..+++++.++|+|.|.+++-+-+. ..|++-+..--|.+ + -+++|.||.|+.+. ..+...-. ...
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~v--iI~LVGnKtDL~dk--rqvs~eEg-------~~k 154 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDV--IIFLVGNKTDLSDK--RQVSIEEG-------ERK 154 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCce--EEEEEcccccccch--hhhhHHHH-------HHH
Confidence 555667899999999999996666655 45666555544442 3 57788999998866 22221111 123
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+.-+.. .|++.+.++..|+..|...++.
T Consensus 155 Akel~a~f~e------tsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 155 AKELNAEFIE------TSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHhCcEEEE------ecccCCCCHHHHHHHHHHhccC
Confidence 3444554444 7889999999999999888765
No 199
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.57 E-value=5.9e-14 Score=110.20 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+++|+.|+|||||++++.+...........+ ......... .++. .+.+||+||.... ..+. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~l~i~D~~g~~~~--------~~~~---~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVS-IDGKPVNLEIWDTSGQERF--------DSLR---D 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEE-ETTEEEEEEEEEETTSGGG--------HHHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--ccccccccc-ccccccccccccccccccc--------cccc---c
Confidence 589999999999999999997664222211111 122222222 3333 6899999995431 1111 2
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+..+|++++|+|.+++-+-.. ..++..+....+.+. |++++.||.|.........++ ...+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~--~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDI--PIIVVGNKSDLSDEREVSVEE---------AQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTS--EEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccc--cceeeeccccccccccchhhH---------HHHHHHHhC
Confidence 23567799999999984433333 356666666655333 999999999976431011111 345666667
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..++. +|++++.++.+++..+.+.+
T Consensus 136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFE------VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 66776 77888899999988876543
No 200
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=3.2e-13 Score=109.44 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe----eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+|+++|.+|+|||||++.+++...........+.+.......+.. .....+.+|||+|... +...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~~l 70 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VKST 70 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HHHH
Confidence 699999999999999999998765332221112112111111110 0124689999999543 2223
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC-----------------ccccCeEEEEEeCCCCCCCccccHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDHEKTLE 158 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~nk~D~~~~~~~~~~ 158 (301)
...+++++|++|+|+|++++-+-.. ..|+..+....+ .....|++||.||.|+.......-+
T Consensus 71 ~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 71 RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 3345788999999999996655544 345555543210 0112399999999997543001111
Q ss_pred HHhcccCCchHHHHHHHcCCceEEecCCC
Q 022188 159 DFLGHECPKPLKEILQLCDNRCVLFDNKT 187 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (301)
..+.. ...+...++...+..+...
T Consensus 151 ~~~~~-----~~~ia~~~~~~~i~~~c~~ 174 (202)
T cd04102 151 LVLTA-----RGFVAEQGNAEEINLNCTN 174 (202)
T ss_pred HHhhH-----hhhHHHhcCCceEEEecCC
Confidence 11111 3455677888777766553
No 201
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.57 E-value=2e-13 Score=112.46 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=92.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEE--EE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
...+|+++|++|+|||||++.++........ ..|....... +. ......+.+|||||.... .
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~ 72 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-----------G 72 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence 4489999999999999999755433321111 1122211111 11 123357789999995432 1
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.....++...+++++|+|.+++.+-.. ..++..+..... .. |++++.||+|.... ....+ ...+.
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~--~i~lv~nK~Dl~~~--~~~~~---------~~~~~ 138 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-NI--PIVLVGNKVDVKDR--QVKAR---------QITFH 138 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CC--CEEEEEECccCccc--cCCHH---------HHHHH
Confidence 111223456799999999985544433 334444444332 23 89999999997533 11111 11233
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. .|++++.++++++.++.+.+..
T Consensus 139 ~~~~~~~~e------~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 139 RKKNLQYYD------ISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence 333444444 7888889999999988877654
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=128.69 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=81.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
..++|+|+|+.++|||||+++|+.... +... ....+.|.......+. +++..+.+|||||..++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence 458999999999999999999996321 1111 0123445444444444 678899999999987742
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
. ++..+ +..+|++++|+|+..+.....+..+..+... +. |.++++||+|....
T Consensus 83 ~-------~v~~~----l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a 135 (607)
T PRK10218 83 G-------EVERV----MSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA 135 (607)
T ss_pred H-------HHHHH----HHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC
Confidence 1 23333 3566999999999877777777776665543 33 88999999997643
No 203
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=1.4e-13 Score=123.33 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=80.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCC------Ccc----cc----CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFK----AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~------~~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..+.++|+++|+.++|||||+++|++.. .+. .. ....+.|.......+. .++..+.+|||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence 4456899999999999999999998431 100 00 0113455555444333 4567899999999644
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+ ...+.. ....+|++++|+|+..+....+.+.+..+... +.+ ++++++||+|+...
T Consensus 88 f-------~~~~~~----~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi~---~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 Y-------VKNMIT----GAAQMDGAILVVSATDGPMPQTREHILLARQV-GVP---YIVVFLNKCDMVDD 143 (394)
T ss_pred H-------HHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---EEEEEEEecccCCH
Confidence 1 122222 23467999999999876777777777776543 442 45578999998754
No 204
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6e-14 Score=131.37 Aligned_cols=212 Identities=22% Similarity=0.274 Sum_probs=136.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--------------------CCcceeeEeEEEEeeCC-eeEEEEe
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------------SGVTKTCEMKTTVLKDG-QVVNVID 75 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~-~~~~liD 75 (301)
...++|+|+||..+|||||..+|+ +.++... .+.|......+.. |.+ ..+++||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL----~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlID 82 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERIL----FYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLID 82 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHH----HHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeC
Confidence 356899999999999999999987 2222111 1666776666666 775 9999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (301)
Q Consensus 76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (301)
|||.-|+.. ++.+++... |++++|+|+..+...+....|+.+... .+ |.++++||+|....
T Consensus 83 TPGHVDFt~-------EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a--- 143 (697)
T COG0480 83 TPGHVDFTI-------EVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA--- 143 (697)
T ss_pred CCCccccHH-------HHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc---
Confidence 999999743 677777666 999999999989988888888877664 34 99999999998876
Q ss_pred cHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC-CCC-----CchHHHHHHHHHHH
Q 022188 156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG-GQP-----YTDELKRGATELRD 229 (301)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~ 229 (301)
++......+...++....+++...... ..+...+..+........ +.. .+.+......++
T Consensus 144 --------~~~~~~~~l~~~l~~~~~~v~~pIg~~----~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~-- 209 (697)
T COG0480 144 --------DFYLVVEQLKERLGANPVPVQLPIGAE----EEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEA-- 209 (697)
T ss_pred --------ChhhhHHHHHHHhCCCceeeeccccCc----cccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHH--
Confidence 333335666677777666665543321 111112222221111111 111 223444444443
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022188 230 KKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEM 266 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (301)
+...++.+.+..++.++.+.+..+...++..+.++..
T Consensus 210 r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 210 REKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred HHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 4444555666666777777776655544444444443
No 205
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.57 E-value=1.1e-13 Score=108.31 Aligned_cols=152 Identities=18% Similarity=0.137 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||++.++...... ...+.... ....+. .++ ..+.+|||+|... ..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~~~~~---~~~~i~-~~~~~~~l~i~D~~g~~~---------~~----- 61 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-LESPEGGR---FKKEVL-VDGQSHLLLIRDEGGAPD---------AQ----- 61 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-CCCCCccc---eEEEEE-ECCEEEEEEEEECCCCCc---------hh-----
Confidence 369999999999999999877554321 11111111 111222 455 3578999999643 01
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
++..+|++++|+|.+++-+-.. ..++..+...... ...|++++.||.|+...+...+.... ...+....
T Consensus 62 --~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 62 --FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred --HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 1345699999999996655555 4455666554321 12399999999986421101111110 12233332
Q ss_pred C-CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+ ..++. +||+++.++++++..+.+
T Consensus 132 ~~~~~~e------~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYYE------TCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEEE------EecCCCCCHHHHHHHHHh
Confidence 2 34444 899999999999998764
No 206
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=6.7e-14 Score=107.81 Aligned_cols=154 Identities=19% Similarity=0.136 Sum_probs=87.7
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCC
Q 022188 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (301)
Q Consensus 24 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
|+|++|+|||||+|++.+.........+........... ....+..+.+||+||..... .......+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~l~D~~g~~~~~-----------~~~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIE-VDGKKVKLQIWDTAGQERFR-----------SLRRLYYRG 68 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEE-ECCEEEEEEEEecCChHHHH-----------hHHHHHhcC
Confidence 589999999999999998776322211111111111111 00125678999999966521 111223567
Q ss_pred ccEEEEEEecCCCCCHHHHHHH--HHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188 104 IHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (301)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (301)
+|++++|+|++.+.+......+ ..+.... ....|+++++||+|.... ....... . ...........++
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~~~~ 138 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGVPYF 138 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCCcEE
Confidence 7999999999854444433322 1122111 223499999999998655 2222111 0 1122233344555
Q ss_pred EecCCCcccccchhHHHHHHHHHH
Q 022188 182 LFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
. .|+..+.++.++++++.
T Consensus 139 ~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 139 E------TSAKTGENVEELFEELA 156 (157)
T ss_pred E------EecCCCCChHHHHHHHh
Confidence 5 66667788999988864
No 207
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=2.5e-14 Score=107.46 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|++|+|||||+++|.|..... ..|... . +.+ .+|||||-+-.. ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i-----~-~~~---~~IDTPGEyiE~-------~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAI-----E-YYD---NTIDTPGEYIEN-------PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------Ccccee-----E-ecc---cEEECChhheeC-------HHHHHHHHH
Confidence 589999999999999999999866411 112111 1 111 469999965421 245555555
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+...+|+++++.|++.+.+.---. +...|.. |+|=|+||+|....+ ..++. .+..+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~----fa~~f~~----pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPG----FASMFNK----PVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCch----hhcccCC----CEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 667889999999998433221111 2223433 999999999987321 22222 23445555543
Q ss_pred -eEEecCCCcccccchhHHHHHHHHHH
Q 022188 180 -CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
++. .|+.++.|+++|.++|.
T Consensus 122 ~if~------vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIFE------VSAVTGEGIEELKDYLE 142 (143)
T ss_pred CeEE------EECCCCcCHHHHHHHHh
Confidence 333 67778899999999875
No 208
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=3.2e-14 Score=129.62 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=96.6
Q ss_pred CCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC-----------------CCCcceeeEeE
Q 022188 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG-----------------SSGVTKTCEMK 61 (301)
Q Consensus 13 ~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~-----------------~~~~t~~~~~~ 61 (301)
.+......+|+++|+.++|||||+++|+...-... +.. ..+.|......
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 33345668999999999999999999985432111 100 11344555444
Q ss_pred EEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEE
Q 022188 62 TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 62 ~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i 141 (301)
.+. +++..+.+|||||..+ ....+... ...+|++++|+|+..++...++..+..+.. ++. .|++
T Consensus 101 ~~~-~~~~~i~~iDTPGh~~-------f~~~~~~~----l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iI 164 (474)
T PRK05124 101 YFS-TEKRKFIIADTPGHEQ-------YTRNMATG----ASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLV 164 (474)
T ss_pred Eec-cCCcEEEEEECCCcHH-------HHHHHHHH----HhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceE
Confidence 443 6678899999999433 12222222 357799999999986666655554444433 343 2789
Q ss_pred EEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC----CceEEecCCCcccccchhHHHH
Q 022188 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD----NRCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
+++||+|....+...+.+.... +..++..++ ..+++ .|+.++.++..
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~iip------vSA~~g~ni~~ 215 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPGNLDIRFVP------LSALEGDNVVS 215 (474)
T ss_pred EEEEeeccccchhHHHHHHHHH-----HHHHHHhcCCCCCceEEE------EEeecCCCccc
Confidence 9999999874321223333333 444444433 23343 66666666654
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.56 E-value=6.1e-14 Score=125.89 Aligned_cols=164 Identities=14% Similarity=0.182 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEE--------------Ee-----------eCCeeE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT--------------VL-----------KDGQVV 71 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~--------------~~-----------~~~~~~ 71 (301)
+..+|+++|+.++|||||+++|++....... ....+.|.......+ .. ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3478999999999999999999875321100 001122222211100 00 014578
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
++|||||..+ ....+... ...+|++++|+|++.+. .....+.+..+. .++.. |+++++||+|+.
T Consensus 83 ~liDtPGh~~-------f~~~~~~g----~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi~---~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLSG----AALMDGALLVIAANEPCPQPQTKEHLMALE-IIGIK---NIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-------HHHHHHHH----HHHCCEEEEEEECCCCccccchHHHHHHHH-HcCCC---eEEEEEEccccC
Confidence 9999999533 12223222 34569999999998655 455555555543 34432 799999999987
Q ss_pred CCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 151 EDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.. ....+.... +..++... +..++ +.|+.++.+++.|+++|...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii------~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENAPII------PVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCCeEE------EEECCCCCChHHHHHHHHHhCC
Confidence 54 222222222 23333221 12233 3788889999999999998665
No 210
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.56 E-value=1.3e-13 Score=110.95 Aligned_cols=165 Identities=17% Similarity=0.109 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+|+|++|+|||||++++......... ..|...........++ ..+.+|||||....... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----------~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL-----------R 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEECCEEEEEEEEECCCChhcccc-----------c
Confidence 57999999999999999999854432111 1122211111111233 35689999996543211 0
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC--chHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP--KPLKEIL 173 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~--~~l~~~~ 173 (301)
...+..+|+++++++.+++-+... ..++..+....+ + .|+++|.||+|+.... ...++......- .....+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 113467799999999984333333 235566655433 2 3999999999974321 111110000000 0122333
Q ss_pred HHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+. .++. +|++++.+++++++.+.+.+.
T Consensus 143 ~~~~~~~~~e------~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 143 KEIGAKKYME------CSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHhCCcEEEE------ccCCCCCCHHHHHHHHHHHHh
Confidence 44443 3444 789999999999999986654
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.56 E-value=2.5e-14 Score=117.97 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-----------------------------ccCCCCCcceeeEeEEEEeeCCeeE
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFK-----------------------------ASAGSSGVTKTCEMKTTVLKDGQVV 71 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (301)
+|+++|+.|+|||||+.+|+...-.. ......+.|.......+. +.+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 48999999999999999996321100 000112444444444444 688899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
.+|||||..++ ...+.. ....+|++++|+|+..+ ........+..+. .++. .|+++++
T Consensus 80 ~liDtpG~~~~-------~~~~~~----~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-------VPNMIT----GASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHHH-------HHHHHH----HhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 99999995431 122222 23567999999999852 2233344444333 3342 2899999
Q ss_pred eCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHH
Q 022188 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVR 198 (301)
Q Consensus 145 nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 198 (301)
||+|+... +...+++.... +..++...+. ++++ +||.++.|+.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence 99998732 11234444443 5555555432 2444 5666666655
No 212
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.56 E-value=1.1e-13 Score=128.41 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-----------------CCeeEEEEeCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~ 82 (301)
+.|+|+|++|+|||||+|+|.+..+.... +.+.|.+.....+... ....+.+|||||...+
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 57999999999999999999987653221 1222222111111100 0124889999995442
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
.......+..+|++++|+|++++....+...+..+... + . |+++++||+|...
T Consensus 83 -----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~--v--piIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 -----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K--T--PFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C--C--CEEEEEECCCccc
Confidence 11122234677999999999877777777666666543 3 2 8999999999863
No 213
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.55 E-value=1.7e-13 Score=124.08 Aligned_cols=156 Identities=18% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (301)
.+.++|+++|+.++|||||+++|+...... .+ ....+.|.......+. ++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TD 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cC
Confidence 345899999999999999999998422100 00 0012455555544443 66
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC---CCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
+..+.+|||||..+ +...+...+..+|++++|+|++++ ........+..+ ..++. .|+++++
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEE
Confidence 78899999999432 222233335678999999999855 333333333333 33343 2799999
Q ss_pred eCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 199 (301)
||+|+...+...++....+ +..++...+. .+++ +|+.++.++.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~~~~i~------iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDTVPFIP------ISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------eeccccccccc
Confidence 9999864311233333333 5556655542 2333 67777777765
No 214
>PRK00049 elongation factor Tu; Reviewed
Probab=99.55 E-value=2.7e-13 Score=121.31 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
+..+|+++|+.++|||||+++|++...-.. .....+.|.......+. +++..+.++||||+.+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~-- 87 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHAD-- 87 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHHH--
Confidence 458999999999999999999997321000 00123445554443333 4677899999999532
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEE-EEEeCCCCCCCccccHHHHh-
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTLEDFL- 161 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~nk~D~~~~~~~~~~~~~- 161 (301)
+...+......+|++++|+|+..+....+...+..+... +. |.+ +++||+|.... ....+.+
T Consensus 88 ---------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~~ 151 (396)
T PRK00049 88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELVE 151 (396)
T ss_pred ---------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHHH
Confidence 333333445678999999999877788887777776653 43 665 68999998643 2222222
Q ss_pred cccCCchHHHHHHHcCC-----ceEEecCCCcc----cccchhHHHHHHHHHHHHHh
Q 022188 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKD----EAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+ +..++..++. ++++.+..... ......++..|++.|...++
T Consensus 152 ~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 152 ME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 22 5556655442 33443322110 00111246678888877553
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.55 E-value=1.5e-13 Score=123.30 Aligned_cols=164 Identities=13% Similarity=0.171 Sum_probs=98.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEeEEEEe--------------e------C-----CeeE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVL--------------K------D-----GQVV 71 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~--------------~------~-----~~~~ 71 (301)
+..+|+++|+.|+|||||+.+|++...... .....+.|.......... . + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 458999999999999999999987421000 011123333322111000 0 0 2578
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
++|||||..+ +...+......+|++++|+|+..+. .......+..+.. .+.. |+++++||+|+.
T Consensus 88 ~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~---~iiVVlNK~Dl~ 152 (411)
T PRK04000 88 SFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIK---NIVIVQNKIDLV 152 (411)
T ss_pred EEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEEeeccc
Confidence 9999999432 2222222234569999999999655 5555556655543 3332 789999999987
Q ss_pred CCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 151 EDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.. ......... +..++... ..++++ .|++++.+++.|++.|...++
T Consensus 153 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 153 SK--ERALENYEQ-----IKEFVKGTVAENAPIIP------VSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cc--hhHHHHHHH-----HHHHhccccCCCCeEEE------EECCCCcCHHHHHHHHHHhCC
Confidence 54 222222222 33333221 123333 788899999999999988664
No 216
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.55 E-value=3.8e-13 Score=100.90 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=108.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|.++|..||||||+++.+.|.++ . ...+|...+..... .++..+.+||.-|- ..+..++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~-~~~~~L~iwDvGGq-----------~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLE-YKGYTLNIWDVGGQ-----------KTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEE-ecceEEEEEEcCCc-----------chhHHHH
Confidence 458999999999999999999999884 2 23445555555544 78899999999983 2466677
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++...|++|+|+|.+++..-.+ ....|++.+... +-.|++++.||.|...+ -..++.-.. .. +..+...
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~-~~--L~~l~ks 150 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA-LD--LEELAKS 150 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh-hC--HHHhccc
Confidence 777888899999999985544443 122233322211 22389999999997644 222222211 11 6667677
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+..+++. +++.++.++.+-++|+..-+
T Consensus 151 ~~~~l~~------cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 151 HHWRLVK------CSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred cCceEEE------EeccccccHHHHHHHHHHHH
Confidence 7777776 67777766666666665443
No 217
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.55 E-value=5.9e-14 Score=125.90 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeeEeEEEEeeCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (301)
.+|+++|+.++|||||+++|+...-... +. ...+.|.......+. +++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence 4799999999999999999974321100 00 011344554444443 677
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..+.+|||||..+ ....+.. ....+|++++|+|+..++...+++.+..+.. ++.. ++++++||+|
T Consensus 80 ~~~~liDtPGh~~-------f~~~~~~----~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~~---~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-------YTRNMAT----GASTADLAVLLVDARKGVLEQTRRHSYIASL-LGIR---HVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-------HHHHHHH----HHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCCC---cEEEEEEecc
Confidence 8999999999543 1222332 3456799999999987777766666555544 3432 6899999999
Q ss_pred CCCCccccHHHHhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHHH
Q 022188 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 199 (301)
....+...+++.... +..++...+. ++++ .|+.++.++.+
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~iip------iSA~~g~ni~~ 187 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLGFRDVTFIP------LSALKGDNVVS 187 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcCCCCccEEE------eecccCCCCcc
Confidence 864321223332332 4445554443 2444 56666666553
No 218
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.1e-13 Score=102.95 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+++++|.+|+|||.|+...+.+...+.-..+.+..--.....+. .....+.+|||.|... +.....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe~-----------frsv~~ 73 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQES-----------FRSVTR 73 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcHH-----------HHHHHH
Confidence 3789999999999999999999877533322222221111111111 2334779999999333 444555
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.+|+++.++|+|.|++.+-+-.. ..||.-+++....+. -++++.||+|+... ..+...- -..+.+..|
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~EE-------GeaFA~ehg 142 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSKEE-------GEAFAREHG 142 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccHHH-------HHHHHHHcC
Confidence 67899999999999994444433 456666666643333 68888999998654 2222110 223344444
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+. ..||+++.++++.+.-....+
T Consensus 143 Lifm------ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 LIFM------ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ceee------hhhhhhhhhHHHHHHHHHHHH
Confidence 3333 489999999999887765443
No 219
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4e-13 Score=99.03 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|..|+|||.|++..+....++......++. .-...+. .++. .+.+|||.|- +.+....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvd--fmiktve-v~gekiklqiwdtagq-----------erfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVD--FMIKTVE-VNGEKIKLQIWDTAGQ-----------ERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeee--EEEEEEE-ECCeEEEEEEeeccch-----------HHHHHHH
Confidence 689999999999999999998655433322222221 1122222 3443 6799999992 2333344
Q ss_pred hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+|+.+|++++|.|++ .+--.--..|+..+.+.....+ -.++|.||+|+.+. .++.+.+.+++ ...
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qigeef--------s~~ 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGEEF--------SEA 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHHHH--------HHh
Confidence 45678999999999998 3333444678888888766554 56789999998755 44444333211 111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+-|+. ..|++...+++.|+..+...
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHHHH
Confidence 222222 36777788999998877644
No 220
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=4.5e-13 Score=108.36 Aligned_cols=161 Identities=15% Similarity=0.051 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCcHHHHHH-HHhCCCCcccc--CCCCCccee--eEeE-E-------EEeeCC--eeEEEEeCCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT--CEMK-T-------TVLKDG--QVVNVIDTPGLFDLSA 84 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin-~l~g~~~~~~~--~~~~~~t~~--~~~~-~-------~~~~~~--~~~~liDtPG~~~~~~ 84 (301)
.+|+++|..|+|||||+. .+.+... ..+ .....+|.. .... . ....++ ..+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 689999999999999996 5544321 111 111122321 0000 0 001233 46799999995431
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH-----
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL----- 157 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~----- 157 (301)
+ ...+++++|++++|+|++++.+-... .++..+..... +. |+++|.||+|+........
T Consensus 80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~--piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RV--PVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CC--CEEEEEEchhccccccchhhhccc
Confidence 1 12357899999999999866555543 35566665432 23 9999999999753200000
Q ss_pred --------HHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 158 --------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 158 --------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
...+ .......+....+..++. +||+++.+++++++.+.+
T Consensus 146 ~~~~~~~~~~~V---~~~e~~~~a~~~~~~~~E------~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADIL---PPETGRAVAKELGIPYYE------TSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCcc---CHHHHHHHHHHhCCEEEE------cCCCCCCCHHHHHHHHHH
Confidence 0000 001134455555666665 899999999999988754
No 221
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.53 E-value=4.8e-14 Score=111.54 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=71.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-eeeEe----------------------------------------
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEM---------------------------------------- 60 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t-~~~~~---------------------------------------- 60 (301)
|+|+|..++|||||+|+|+|...++++..+.... +....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999998777654422110 00000
Q ss_pred ------------EEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH
Q 022188 61 ------------KTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (301)
Q Consensus 61 ------------~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l 128 (301)
..........+.||||||+.+.......+ +.++ .+.+|++|+|+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~---~~~~----~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEI---TEEY----LPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHH---HHHH----HSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHH---HHHh----hccCCEEEEEeccCcccchHHHHHHHHH
Confidence 00011123568999999998744333222 2222 3566999999999966776666655554
Q ss_pred HHhhCccccCeEEEEEeCC
Q 022188 129 PNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 129 ~~~~~~~~~~~~ilv~nk~ 147 (301)
...... .+++|+||+
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 443332 588999984
No 222
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=4.4e-13 Score=114.84 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc----
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---- 86 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~---- 86 (301)
.+++.++|.+|.|||||+|+|++...... .......|.......... .+| ..++|+|||||+|.....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 47999999999999999999998754221 111122233333333222 223 367999999999865432
Q ss_pred ---HHHHHHHHHHHhc-------c--CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 87 ---EFVGKEIVKCLGM-------A--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 87 ---~~~~~~~~~~~~~-------~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
..+..++..++.. . ..++|++||.+... +++.+-+...++.+... + ++|-|+.|.|.+..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~lT~- 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTLTK- 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccCCH-
Confidence 2344445555432 1 23789999999887 66999998887777653 3 78999999999988
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCC
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (301)
..+..+... +...+.....+++.|+..
T Consensus 174 -~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 -DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred -HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 777777776 777888778777776654
No 223
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.53 E-value=4e-13 Score=100.34 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+|+|.+|+|||||+-+.+...+-+..+...+..-+.....+. .....+.+|||.|.. .+.....
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-g~~~KlaiWDTAGqE-----------rFRtLTp 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-GKRLKLAIWDTAGQE-----------RFRTLTP 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-CceEEEEEEeccchH-----------hhhccCH
Confidence 3799999999999999999998655422222223333222222211 233478999999922 3333445
Q ss_pred ccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.+|+++.++|+|.|++.|-+-... .|++.+.....++ .--.++|.||+|....--...++ =..+..+.+
T Consensus 79 SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reE---------G~kfAr~h~ 148 (209)
T KOG0080|consen 79 SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREE---------GLKFARKHR 148 (209)
T ss_pred hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHH---------HHHHHHhhC
Confidence 578999999999999954444333 3445554443332 11356889999965320011111 112333333
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.-.+. .||+...+++..++.+...+.
T Consensus 149 ~LFiE------~SAkt~~~V~~~FeelveKIi 174 (209)
T KOG0080|consen 149 CLFIE------CSAKTRENVQCCFEELVEKII 174 (209)
T ss_pred cEEEE------cchhhhccHHHHHHHHHHHHh
Confidence 33333 788888888887776655443
No 224
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.52 E-value=5.2e-13 Score=124.34 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee----------C-------CeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~liDtPG~~~ 81 (301)
.+.|+|+|++|+|||||+|+|.+....... ..+.|.+......... . -..+++|||||..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 467999999999999999999987542221 1222222211111000 0 01278999999655
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
+. ......+..+|++++|+|+++++.......+..+... + . |+++++||+|..
T Consensus 84 f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~--v--piIvviNK~D~~ 136 (586)
T PRK04004 84 FT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K--T--PFVVAANKIDRI 136 (586)
T ss_pred HH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C--C--CEEEEEECcCCc
Confidence 31 1111234567999999999977777777777666542 3 2 899999999975
No 225
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.52 E-value=8.5e-14 Score=114.42 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeeEeEEEEe----eCCeeEEEEeCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG 78 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG 78 (301)
++|+|+|+.|+|||||+++|++....... ....+.+.......+.. .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 46999999999999999999865432110 00012222222222211 1235789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
..++. ...... +..+|++++|+|+....+......++.+... + .|+++++||+|..
T Consensus 81 ~~~f~-------~~~~~~----~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-------DEVAAA----LRLSDGVVLVVDVVEGVTSNTERLIRHAILE-G----LPIVLVINKIDRL 136 (213)
T ss_pred CcchH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccC
Confidence 77631 122233 3456999999999866665555544444321 2 3899999999975
No 226
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=1.2e-13 Score=132.12 Aligned_cols=118 Identities=20% Similarity=0.271 Sum_probs=80.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--c-----cC---------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--A-----SA---------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~--~-----~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..++|+|+|+.|+|||||+++|+...-.. . +. ...+.|.......+. +.+..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHH
Confidence 46899999999999999999997432100 0 00 012344444444444 7888999999999765
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+. .+...+ +..+|++++|+|++.+........+..+... +. |+++++||+|....
T Consensus 86 f~-------~~~~~~----l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~~----p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FT-------GEVERS----LRVLDGAVVVFDAVTGVQPQTETVWRQADRY-GI----PRLIFINKMDRVGA 140 (687)
T ss_pred HH-------HHHHHH----HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEECCCCCCC
Confidence 31 223333 3455999999999877777776666665443 32 89999999997754
No 227
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=115.21 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=107.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+..-+++++|+|++|||||+|.|++... .....+.|+-..+.....+++-.++++|+||+........-.+.++..
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vls- 136 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLS- 136 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeee-
Confidence 3447999999999999999999998653 444556666666666666899999999999987754433222333333
Q ss_pred HhccCCCccEEEEEEecCC------------------------------------------CCCHHHHHHHHHHHH----
Q 022188 97 LGMAKDGIHAFLVVFSVTN------------------------------------------RFSQEEETAVHRLPN---- 130 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~------------------------------------------~~~~~~~~~l~~l~~---- 130 (301)
..+.+|++++|+|+.. +++..+...++.+..
T Consensus 137 ---v~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I 213 (365)
T COG1163 137 ---VARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRI 213 (365)
T ss_pred ---eeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCc
Confidence 3456699999998872 222222222222211
Q ss_pred -------------------hhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccc
Q 022188 131 -------------------LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEA 191 (301)
Q Consensus 131 -------------------~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (301)
+.+..++.|.++++||+|.... +.++. +.... +.++ .|+
T Consensus 214 ~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~------------l~~~~--~~v~------isa 271 (365)
T COG1163 214 HNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELER------------LARKP--NSVP------ISA 271 (365)
T ss_pred ccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHH------------HHhcc--ceEE------Eec
Confidence 2233456799999999997654 22222 22211 3333 678
Q ss_pred cchhHHHHHHHHHHHHHh
Q 022188 192 KGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 192 ~~~~~~~~L~~~l~~~~~ 209 (301)
+.+.++++|.+.|.+.+.
T Consensus 272 ~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 272 KKGINLDELKERIWDVLG 289 (365)
T ss_pred ccCCCHHHHHHHHHHhhC
Confidence 888899999999988764
No 228
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.52 E-value=4.4e-13 Score=112.67 Aligned_cols=168 Identities=20% Similarity=0.208 Sum_probs=107.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
-|++||.||||||||+++++.... .....+.||-....... ...+..+++-|.||+........-++.++.+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 478999999999999999998765 22334444443333322 24566799999999988665555566778887776
Q ss_pred cCCCccEEEEEEecCCCCC---H-HH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 100 AKDGIHAFLVVFSVTNRFS---Q-EE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~---~-~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ .++++|+|++ +.. + ++ ..+...|...-..-..+|.+|++||+|..... +.++.+.+. +..
T Consensus 238 t----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~--------l~~ 303 (369)
T COG0536 238 T----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKKA--------LAE 303 (369)
T ss_pred h----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHHH--------HHH
Confidence 6 8999999998 332 2 22 23333444332222445999999999955330 233332222 222
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.++.....+ .|+.++.++++|+..+..++..
T Consensus 304 ~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 ALGWEVFYL-----ISALTREGLDELLRALAELLEE 334 (369)
T ss_pred hcCCCccee-----eehhcccCHHHHHHHHHHHHHH
Confidence 223222211 5777888999999998887765
No 229
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=2.8e-13 Score=119.83 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=121.8
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------------CCCCCcceeeEeEEEEeeCC--eeEEEEeCCCC
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------AGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGL 79 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~ 79 (301)
|.++.++++||-|-..|||||..+|+...-+... .-..+.|...+.....+.++ ..+++|||||.
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3456789999999999999999998754321100 11237888888887774332 68899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 159 (301)
-|+.. |+.+.+..+ +++|+|+|++.+...+....+...-+. .. .+|.|+||+|+..+ ..+.
T Consensus 136 vDFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~---~L--~iIpVlNKIDlp~a---dpe~ 196 (650)
T KOG0462|consen 136 VDFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA---GL--AIIPVLNKIDLPSA---DPER 196 (650)
T ss_pred ccccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc---CC--eEEEeeeccCCCCC---CHHH
Confidence 99865 666666666 999999999988888776655544332 32 68999999997654 2333
Q ss_pred HhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
...+ +.+++..+...++. .||+.|.++.++++.|.+.++...
T Consensus 197 V~~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 197 VENQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred HHHH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCC
Confidence 3333 55566666665555 799999999999999999887543
No 230
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.7e-12 Score=99.85 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=101.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVG 90 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (301)
..+|+|+|+.|+|||||+.++..+....+ ..+..+ .|+..........++..+++++|||...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------- 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------- 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence 46899999999999999999997764222 111222 3444444444545558999999999433
Q ss_pred HHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
+...+....+++.++++++|.+.+.+......+..+...... |+++..||.|+.+. +-++.++
T Consensus 81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~i----p~vVa~NK~DL~~a-----------~ppe~i~ 143 (187)
T COG2229 81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPI----PVVVAINKQDLFDA-----------LPPEKIR 143 (187)
T ss_pred --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCC----CEEEEeeccccCCC-----------CCHHHHH
Confidence 222333346788999999999866666777788888776442 99999999998866 2222244
Q ss_pred HHHHHc--CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 171 EILQLC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 171 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+++..+ ..+++. .++..+.+..+.+..+..
T Consensus 144 e~l~~~~~~~~vi~------~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 144 EALKLELLSVPVIE------IDATEGEGARDQLDVLLL 175 (187)
T ss_pred HHHHhccCCCceee------eecccchhHHHHHHHHHh
Confidence 444433 334444 445455666666655543
No 231
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.51 E-value=2.7e-13 Score=128.38 Aligned_cols=157 Identities=11% Similarity=0.120 Sum_probs=95.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cC-----------------CCCCcceeeEeEEE
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTKTCEMKTT 63 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (301)
+..+..+|+|+|++++|||||+++|+....... +. ...+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 334557899999999999999999986442111 00 00133444433333
Q ss_pred EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (301)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (301)
. +++..+.++||||..+ ....+.. ....+|++++|+|+..+....+...+..+.. ++. .+++++
T Consensus 100 ~-~~~~~~~liDtPG~~~-------f~~~~~~----~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv 163 (632)
T PRK05506 100 A-TPKRKFIVADTPGHEQ-------YTRNMVT----GASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA 163 (632)
T ss_pred c-cCCceEEEEECCChHH-------HHHHHHH----HHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence 3 5677899999999533 1222222 3456799999999986766665555555443 343 278999
Q ss_pred EeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC---ceEEecCCCcccccchhHHH
Q 022188 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVR 198 (301)
Q Consensus 144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 198 (301)
+||+|....+...+++.... +..++...+. ++++ .|+.++.++.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~iip------iSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHDVTFIP------ISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCCccEEE------EecccCCCcc
Confidence 99999864211333333333 4445555443 2344 5666666655
No 232
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.51 E-value=4.3e-13 Score=102.60 Aligned_cols=162 Identities=18% Similarity=0.160 Sum_probs=100.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
..++|+|+|.+|+|||||+|.+........-.. ....|+...+ . .....+.+|||.| ++..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V---d-~~~vtlQiWDTAG------------QERF 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV---D-DRSVTLQIWDTAG------------QERF 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE---c-CeEEEEEEEeccc------------HHHh
Confidence 347999999999999999999987765322111 1222332211 1 2223678999999 2333
Q ss_pred HHH-hccCCCccEEEEEEecCCCCCH--HHHHHHHHHHHhhCcc-ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 95 KCL-GMAKDGIHAFLVVFSVTNRFSQ--EEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 95 ~~~-~~~~~~~~~il~v~~~~~~~~~--~~~~~l~~l~~~~~~~-~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
..+ ...|+++|+.+++.|...+-+. .+...-+.|...-..+ -..|++|+.||+|........+. .+
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS----------~~ 141 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVS----------EK 141 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceee----------HH
Confidence 333 3458999999999999843333 3333444555543222 34599999999997653101111 12
Q ss_pred HHHHHcC----CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 171 EILQLCD----NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 171 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
....+|. .+|+. .||+...++++.+..+.+..-.+
T Consensus 142 ~Aq~WC~s~gnipyfE------tSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 142 KAQTWCKSKGNIPYFE------TSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred HHHHHHHhcCCceeEE------ecccccccHHHHHHHHHHHHHhc
Confidence 2233443 44555 78899999999999887765443
No 233
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=4.9e-13 Score=106.72 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc----
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---- 86 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~---- 86 (301)
.++|.|||++|.||||++|+|+...+..++.. +.+.|+......... .++ -.+++||||||+|..-.+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 37899999999999999999987665443222 233455544433332 233 367999999999964322
Q ss_pred ---HHHHHHHHHHHhc----------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 87 ---EFVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 87 ---~~~~~~~~~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+.++..+++.. ...++|+++|.++++ +.+...+.+.++.|.+.. +++-|+-|.|.+.-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH
Confidence 1123333333321 134689999999988 788888888888887752 78899999997654
Q ss_pred ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCc
Q 022188 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTK 188 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 188 (301)
++...|... ++.-+.+.+..+++.+....
T Consensus 200 --eEr~~Fkqr-----I~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 200 --EERSAFKQR-----IRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred --HHHHHHHHH-----HHHHHHhcCccccccccccc
Confidence 444555544 77777788888888666543
No 234
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.6e-13 Score=104.01 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=99.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|.+|+|||-|+.+.+.........++.+.... ..... .++. ...+|||.| ++..++
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~--t~t~~-vd~k~vkaqIWDTAG------------QERyrA 78 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFA--TRTVN-VDGKTVKAQIWDTAG------------QERYRA 78 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEE--eecee-ecCcEEEEeeecccc------------hhhhcc
Confidence 478999999999999999999977763333333332222 22222 4444 568999999 333444
Q ss_pred H-hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 97 L-GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 97 ~-~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ ..+|+++.+.++|.|++.+.+-+. .+||+.|+......+ ++++|.||+|+..- ..+... .-+.+.+
T Consensus 79 itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~l--raV~te-------~~k~~Ae 147 (222)
T KOG0087|consen 79 ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNHL--RAVPTE-------DGKAFAE 147 (222)
T ss_pred ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhhc--cccchh-------hhHhHHH
Confidence 3 456899999999999985555554 567788877765555 89999999997542 111110 0223334
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
..+...+. .||....++...+..+..
T Consensus 148 ~~~l~f~E------tSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 148 KEGLFFLE------TSALDATNVEKAFERVLT 173 (222)
T ss_pred hcCceEEE------ecccccccHHHHHHHHHH
Confidence 33433333 566667778877765544
No 235
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4.3e-13 Score=98.67 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++.|+|.+.+|||||+-+.++....+.-.+..+.. ..+..+. ......+.+|||.|... +....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqEr-----------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQER-----------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccchh-----------hhHHH
Confidence 3589999999999999999999877633322222222 2222222 12345789999999332 22333
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++++++++|++.|.++.-+-.. ..+.-.++...-.++ |++++.||+|.... ..+.. +..+.+...+
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~-------e~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISH-------ERGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeH-------HHHHHHHHHh
Confidence 456899999999999984322222 334444444433344 99999999997655 22211 1145667777
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
|..++. .|++.+.++.++++.+...+-
T Consensus 157 GfefFE------tSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 157 GFEFFE------TSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred ChHHhh------hcccccccHHHHHHHHHHHHH
Confidence 876665 788888899999888776654
No 236
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.50 E-value=3e-13 Score=111.00 Aligned_cols=115 Identities=21% Similarity=0.333 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeeEeEEEEee---------CCeeEEEEeC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------DGQVVNVIDT 76 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (301)
++|+|+|+.++|||||+++|+...-..... ...+.|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 479999999999999999997543210000 01123333222222211 1567899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
||..++. .+...+ +..+|++++|+|+..+.+...+..++.+... + . |+++++||+|+.
T Consensus 81 PG~~~f~-------~~~~~~----l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~--~--p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-------SEVTAA----LRLCDGALVVVDAVEGVCVQTETVLRQALKE-R--V--KPVLVINKIDRL 138 (222)
T ss_pred CCccccH-------HHHHHH----HHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECCCcc
Confidence 9987642 233333 3455999999999977777776666655432 2 2 899999999975
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.50 E-value=3.9e-13 Score=123.61 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=79.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC--ccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (301)
...++|+|+|+.|+|||||+++|+.... ...+.. ..+.+.......+. +++..+++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~-~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP-YRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE-ECCEEEEEEEC
Confidence 3568999999999999999999962111 000000 01233333334444 78889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
||..++. .+....+ ..+|++++|+|+..+........+..... .+. |+++++||+|....
T Consensus 87 PG~~df~-------~~~~~~l----~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~i----Piiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFS-------EDTYRTL----TAVDSALMVIDAAKGVEPQTRKLMEVCRL-RDT----PIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhH-------HHHHHHH----HHCCEEEEEEecCCCCCHHHHHHHHHHHh-cCC----CEEEEEECCccccc
Confidence 9976642 2333333 35599999999987777666666655443 233 99999999997654
No 238
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=9.3e-14 Score=121.59 Aligned_cols=138 Identities=18% Similarity=0.214 Sum_probs=98.5
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHH
Q 022188 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (301)
Q Consensus 12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 91 (301)
+++.+...++++|+|.+++|||||+|.++...+ ...+...|+..-..++..+.-..+.++||||+.|....+.-+.+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence 466677889999999999999999999987654 34456667776666656567778999999999985432222222
Q ss_pred HHHHHHhccCCCccEEEEEEecCC--CCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188 92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 159 (301)
+. .+.....-..++||+.|++. +.+..+ ..++..++.+|.+. |+|+|+||+|.... +.+.+
T Consensus 238 -mq-sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~ 301 (620)
T KOG1490|consen 238 -MQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ 301 (620)
T ss_pred -HH-HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence 11 12222233468999999983 444444 56788888888775 89999999998877 55544
No 239
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.48 E-value=1.5e-12 Score=107.57 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcce---------eeE-----------------------------
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTK---------TCE----------------------------- 59 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t~---------~~~----------------------------- 59 (301)
+.|+|+|++|+||||++++|+|...++.+.. ...++. ...
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999864443211 110000 000
Q ss_pred ---------eEEEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCC-CccEEEEEEecCCCCCHHH-HHHHH
Q 022188 60 ---------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVH 126 (301)
Q Consensus 60 ---------~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~~~~~-~~~l~ 126 (301)
...+...+...++||||||+..... ....+...+...+..+.. ..+.+++|+++...+...+ ..+.+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~ 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence 0001111236789999999975421 112333344443444444 3468999999986666665 45555
Q ss_pred HHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 127 RLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
.+... + +++++|+||+|....
T Consensus 187 ~ld~~-~----~rti~ViTK~D~~~~ 207 (240)
T smart00053 187 EVDPQ-G----ERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHc-C----CcEEEEEECCCCCCc
Confidence 55432 3 289999999998754
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.48 E-value=6.6e-13 Score=120.14 Aligned_cols=140 Identities=16% Similarity=0.194 Sum_probs=87.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeeEeEEEEeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (301)
+..+|+++|+.++|||||+.+|+...-... + ....+.|.......+. +++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence 458999999999999999999874211000 0 0122455555554444 678
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCeEE
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i 141 (301)
..++++||||..++ ..++.. ....+|++++|+|+..+. ....++.+..+.. +|.+ +++
T Consensus 85 ~~i~lIDtPGh~~f-------~~~~~~----g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRDF-------IKNMIT----GTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI 149 (446)
T ss_pred eEEEEEECCChHHH-------HHHHHH----hhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence 89999999995442 223333 345669999999998554 3455666665544 4543 578
Q ss_pred EEEeCCCCCC--CccccHHHHhcccCCchHHHHHHHcCC
Q 022188 142 VVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 142 lv~nk~D~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+++||+|... -+...+++...+ +..++...+.
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~ 183 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGY 183 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCC
Confidence 9999999432 111445555554 6666665543
No 241
>PLN03126 Elongation factor Tu; Provisional
Probab=99.48 E-value=2.6e-12 Score=116.72 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=89.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
.+.++|+++|+.++|||||+++|++..... ......+.|.......+. +++..+++|||||..+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH-
Confidence 445899999999999999999999532100 001112445444444333 5678899999999544
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH-Hh
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FL 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~-~~ 161 (301)
....+...+ ..+|++++|+|+..+.....++.+..+... +.+ ++++++||+|.... ....+ ..
T Consensus 157 ------f~~~~~~g~----~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~ 220 (478)
T PLN03126 157 ------YVKNMITGA----AQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE 220 (478)
T ss_pred ------HHHHHHHHH----hhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence 222333333 466999999999977777777777766543 542 37889999998754 33222 22
Q ss_pred cccCCchHHHHHHHcC
Q 022188 162 GHECPKPLKEILQLCD 177 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (301)
.+ +..++..++
T Consensus 221 ~~-----i~~~l~~~g 231 (478)
T PLN03126 221 LE-----VRELLSSYE 231 (478)
T ss_pred HH-----HHHHHHhcC
Confidence 23 666766654
No 242
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.47 E-value=9.3e-13 Score=96.99 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|.+|+|||||+-....... ++................ .+| ..+.+|||.| .+.+....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEee-cCCcEEEEEEeeccc-----------HHHHHHHH
Confidence 3578999999999999998876544 221111111112222222 334 3679999999 22344445
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+++++|++++|.|.++.-+-.. ++||+.++..+.. + |-++|.||.|..+. ..+...- .+......
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v--~~vLVGNK~d~~~R--rvV~t~d-------Ar~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-V--PKVLVGNKNDDPER--RVVDTED-------ARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-c--cceecccCCCCccc--eeeehHH-------HHHHHHhc
Confidence 556899999999999995544444 6788888887653 3 89999999997654 2222111 23344444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+..++. .|++...+++..+..|.+.+
T Consensus 143 gie~FE------TSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 143 GIELFE------TSAKENENVEAMFHCITKQV 168 (198)
T ss_pred Cchhee------hhhhhcccchHHHHHHHHHH
Confidence 555555 78888888999888887654
No 243
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.47 E-value=1.5e-12 Score=106.00 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+|+|+|++|+|||||++.|.+.....+..+ + ......... ..+..+.||||||.... ...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s----~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-------~~~~---- 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS----I-EPNVATFILNSEGKGKKFRLVDVPGHPKL-------RDKL---- 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCc----E-eecceEEEeecCCCCceEEEEECCCCHHH-------HHHH----
Confidence 599999999999999999997754222211 1 111111111 23567899999996541 1222
Q ss_pred hccCCCc-cEEEEEEecCCCCCHHHHHHHHHHHHhh----CccccCeEEEEEeCCCCCCC
Q 022188 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 98 ~~~~~~~-~~il~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+++.. +++|||+|+.... .........+...+ ......|++++.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2234455 9999999998331 11112222222211 10112399999999998654
No 244
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.46 E-value=3.4e-12 Score=110.97 Aligned_cols=175 Identities=19% Similarity=0.166 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc---ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV---TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
...+|||+|.+|+|||||||+|.|...-+.+..+.+. |.....+ ....-.++++||.||++.+.-+... +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~----Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEE----YL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence 3579999999999999999999885443333333332 2233332 3345567999999999876544333 22
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC-CC------ccccHHHHhcccCCc
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED------HEKTLEDFLGHECPK 167 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~-~~------~~~~~~~~~~~~~~~ 167 (301)
..+. ....|.||++.+ . +++..+....+.++.. |. |+++|-||+|.. .. ..-..++.+.. ...
T Consensus 108 ~~~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~ 177 (376)
T PF05049_consen 108 KEVK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRE 177 (376)
T ss_dssp HHTT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHH
T ss_pred HHcc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCHHHHHHH-HHH
Confidence 2221 234487766544 3 8999998888888775 54 899999999952 11 00111122221 111
Q ss_pred hHHHHHHH---cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 168 PLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 168 ~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
...+-+.+ ...+++.+++.... ...+..|.+.+..-++...
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence 11222222 23567777766433 3678888888877776543
No 245
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.46 E-value=1e-12 Score=120.94 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC--CccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRK--AFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~--~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (301)
...++|+|+|+.|+|||||+++|+-.. ....+.. ..+.|.......+. +++..+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence 456899999999999999999985211 1001100 11334444444444 78899999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
||..++. .+...+ +..+|++|+|+|+..++......+++.+.. .+ . |+++++||+|....
T Consensus 88 PG~~df~-------~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~--~--PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFS-------EDTYRT----LTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD--T--PIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHH-------HHHHHH----HHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC--C--CEEEEEECccccCC
Confidence 9976531 223333 345699999999987777666666665543 22 2 99999999997643
No 246
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.2e-12 Score=114.83 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=113.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+.|.++||--.|||||+..|-+-.+.. .-..+.|.+...+..... +...++++||||... +..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA------------Ft~ 70 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA------------FTA 70 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH------------HHH
Confidence 3679999999999999999998877733 335678999988887754 457999999999332 222
Q ss_pred Hhc-cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HH
Q 022188 97 LGM-AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQ 174 (301)
Q Consensus 97 ~~~-~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~ 174 (301)
+.. -+.-.|.+++|+++++++.++..+.+..++.. + + |+++.+||+|..+.+...+...+.+ . .+ .+
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~--v--P~iVAiNKiDk~~~np~~v~~el~~-~-----gl~~E 139 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G--V--PIVVAINKIDKPEANPDKVKQELQE-Y-----GLVPE 139 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C--C--CEEEEEecccCCCCCHHHHHHHHHH-c-----CCCHh
Confidence 221 23345999999999999999999988888875 3 3 9999999999886522222222221 0 11 12
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.++.. .. ..+.||+++.|+++|+..+.-..
T Consensus 140 ~~gg~-v~---~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 140 EWGGD-VI---FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred hcCCc-eE---EEEeeccCCCCHHHHHHHHHHHH
Confidence 22222 11 13479999999999999886554
No 247
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.46 E-value=1e-13 Score=103.09 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-cc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFK-AS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+|+|+|+.|+|||||+++|++..... .. ....+.+....... .......+.+||++|........ ..++.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~-------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIV-VDGDRQSLQFWDFGGQEEFYSQH-------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEE-ETTEEEEEEEEEESSSHCHHCTS-------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEE-ecCCceEEEEEecCccceecccc-------cchhh
Confidence 69999999999999999999877641 11 11112222222111 11223358899999965422111 11122
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
.+|++++|+|++++.+-.. ..++.++...-+.....|+++|.||.|
T Consensus 73 ----~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 ----KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ----HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ----cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 4499999999984433333 234444544432112239999999988
No 248
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2e-12 Score=114.48 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=117.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.++.|-|+||...|||||+.+|-+..+.. .-.++.|.+...+.+...+|..+++.||||.- .+..+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa------------AF~aM 217 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLPSGKSITFLDTPGHA------------AFSAM 217 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecCCCCEEEEecCCcHH------------HHHHH
Confidence 35789999999999999999998777633 33568899998888887899999999999932 23333
Q ss_pred h-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 G-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
. .-....|.+++|+.++++..++..+.++..+.. .+ |+++.+||+|....+-+.+...+.. ..-.++..
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~ 287 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDL 287 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHc
Confidence 2 224556999999999999999998888887765 44 9999999999875522222222221 11234555
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
|+.+-. .+.|+.++.+++.|.+.+.-.
T Consensus 288 GGdVQv----ipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 288 GGDVQV----IPISALTGENLDLLEEAILLL 314 (683)
T ss_pred CCceeE----EEeecccCCChHHHHHHHHHH
Confidence 654322 237888999999988877543
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.44 E-value=2.6e-12 Score=115.94 Aligned_cols=165 Identities=12% Similarity=0.150 Sum_probs=101.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEE-----------------E---------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTT-----------------V--------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~-----------------~--------------- 64 (301)
...+|+++|+...|||||+.+|+|.....-. ....+.|........ .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 3489999999999999999999986542211 001122211111100 0
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV 143 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (301)
..-...+.++||||..+ ....+... ...+|++++|+++..+ .....++.+..+ ..++.. |++++
T Consensus 113 ~~~~~~i~~IDtPGH~~-------fi~~m~~g----~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi~---~iIVv 177 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDI-------LMATMLNG----AAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKLK---HIIIL 177 (460)
T ss_pred ccccceEeeeeCCCHHH-------HHHHHHHH----HhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCCC---cEEEE
Confidence 00124689999999432 22333333 3466999999999854 455555555444 344543 78999
Q ss_pred EeCCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 144 ~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+||+|+.+. ..+.+.+.. ++.++... ..+++ +.|+.++.+++.|++.|...++.
T Consensus 178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~~~~~ii------pVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIADNAPII------PISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EecccccCH--HHHHHHHHH-----HHHHHHhhccCCCeEE------EeeCCCCCCHHHHHHHHHhhCCC
Confidence 999998754 444444443 44444332 22333 37888999999999999976653
No 250
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.43 E-value=8.6e-12 Score=102.96 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-eC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+|+++|+.|+|||||++++.+........ .|.......... .. ...+.+|||+|.. ++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHH
Confidence 799999999999999999999877643332 221111111111 11 3457899999943 34445
Q ss_pred HhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
...++.++++++++++... ++......+...+....+.. .|++++.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 5566789999999999983 22222345555666654322 399999999998755
No 251
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.43 E-value=9.7e-13 Score=107.14 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=72.8
Q ss_pred eeEEEEeCCCCCC---CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH--h-hCccccCeEEE
Q 022188 69 QVVNVIDTPGLFD---LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN--L-FGKNVFDYMIV 142 (301)
Q Consensus 69 ~~~~liDtPG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~~~il 142 (301)
....+|||||... .+.+.. -+...+. ...|-+++||+|.. |-+.....+-.+|.. + +.... |+++
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGs----IIte~la--ss~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktkl--p~iv 186 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGS----IITETLA--SSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKL--PFIV 186 (366)
T ss_pred cCEEEEcCCCceEEEEecCCcc----chHhhHh--hcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccC--CeEE
Confidence 3578999999654 222222 2333333 23678999999987 444443333333322 2 22234 9999
Q ss_pred EEeCCCCCCCccccHHHHhcccCC-----------chHHHHHHHcCCceEEecC---CCcccccchhHHHHHHHHHHHHH
Q 022188 143 VFTGGDDLEDHEKTLEDFLGHECP-----------KPLKEILQLCDNRCVLFDN---KTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 143 v~nk~D~~~~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
++||+|..+. .-..+|+.. +. ..+..+..........|.. ...+|+.+|.|.++++..+...+
T Consensus 187 vfNK~Dv~d~--~fa~eWm~D-fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 187 VFNKTDVSDS--EFALEWMTD-FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred EEeccccccc--HHHHHHHHH-HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 9999998876 444444432 11 1111111111111111211 12367888999999999999988
Q ss_pred hhc
Q 022188 209 VQN 211 (301)
Q Consensus 209 ~~~ 211 (301)
.++
T Consensus 264 dEy 266 (366)
T KOG1532|consen 264 DEY 266 (366)
T ss_pred HHH
Confidence 764
No 252
>PLN00023 GTP-binding protein; Provisional
Probab=99.42 E-value=4.4e-12 Score=108.15 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe------------eCCeeEEEEeCCCCCCCCCCc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------------KDGQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~liDtPG~~~~~~~~ 86 (301)
..+|+|+|..|+|||||++.+.+...........+.+.......+.. .....+.||||+|...
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr----- 95 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER----- 95 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh-----
Confidence 38999999999999999999997664222222222222211111110 0124589999999443
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc----------cccCeEEEEEeCCCCCC
Q 022188 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK----------NVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~nk~D~~~ 151 (301)
+......++++++++|+|+|++++-+... ..++..+...... ....|++||.||+|+..
T Consensus 96 ------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 22333445788999999999995544443 3455556554210 01138999999999754
No 253
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=97.66 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH-h
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL-G 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~-~ 98 (301)
++|+++|..=+|||||+=+...........+....+.......+. ...-.+.+|||.|. +...++ .
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQ------------ErfHALGP 80 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQ------------ERFHALGP 80 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccch------------HhhhccCc
Confidence 789999999999999998877444311111111111111111111 23457899999993 223333 4
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.+|++.+++++|.|++++-+-+- +.|...|+.++|..+ .++||.||+|+.+.-..+..+ ...+.+..|
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAesvG 149 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAESVG 149 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHhhc
Confidence 46899999999999996655554 678889999999887 899999999975431111111 234556667
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..++. .||+++.|+.+|+..+-..+
T Consensus 150 A~y~e------TSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 150 ALYME------TSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhhee------cccccccCHHHHHHHHHHHH
Confidence 77776 89999999999999886544
No 254
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.40 E-value=1.4e-11 Score=107.07 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=97.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCC---cceeeEe-----EEEEeeC--CeeEE
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSG---VTKTCEM-----KTTVLKD--GQVVN 72 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~---~t~~~~~-----~~~~~~~--~~~~~ 72 (301)
+....|+|+|+.++|||||+|++++..+.+... +..+ .|+.... ..+...+ ..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 345789999999999999999999984333221 1122 3333322 1111111 25789
Q ss_pred EEeCCCCCCCCCCcHHHHHH-----------------HHH--HHhccCCCccEEEEEE-ecC------CCCCHHHHHHHH
Q 022188 73 VIDTPGLFDLSAGSEFVGKE-----------------IVK--CLGMAKDGIHAFLVVF-SVT------NRFSQEEETAVH 126 (301)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~il~v~-~~~------~~~~~~~~~~l~ 126 (301)
+|||+|+.+.......-... .+. .-.....+.+..|+|. |.+ ..+...+.+++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998754321110000 000 0011123668888888 774 356677788888
Q ss_pred HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.|++. +. |+++++|+.|-... ... +. ...+-.+.+.++.+++.. ......+..+++.+..
T Consensus 175 eLk~~-~k----PfiivlN~~dp~~~--et~-~l--------~~~l~eky~vpvl~v~c~----~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 175 ELKEL-NK----PFIILLNSTHPYHP--ETE-AL--------RQELEEKYDVPVLAMDVE----SMRESDILSVLEEVLY 234 (492)
T ss_pred HHHhc-CC----CEEEEEECcCCCCc--hhH-HH--------HHHHHHHhCCceEEEEHH----HcCHHHHHHHHHHHHh
Confidence 88875 33 99999999994323 111 10 123335555555554332 2233556666665544
Q ss_pred HHh
Q 022188 207 VIV 209 (301)
Q Consensus 207 ~~~ 209 (301)
-.|
T Consensus 235 EFP 237 (492)
T TIGR02836 235 EFP 237 (492)
T ss_pred cCC
Confidence 433
No 255
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=1.4e-11 Score=111.51 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCc--------------cc---------------cCCCCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--------------KA---------------SAGSSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~--------------~~---------------~~~~~~~t~~~~~~~~~~~~ 67 (301)
.+..+|+++|+.++|||||+-+|+-..-. .. .....+.|.......+. ++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TT 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CC
Confidence 34589999999999999999888631110 00 00112455555555444 67
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-CC------HHHHHHHHHHHHhhCccccCeE
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
+..++++||||..+ +...+......+|++++|+|+... +. ...++.+..+. .+|.+ ++
T Consensus 84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~-~~gi~---~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAF-TLGVK---QM 148 (447)
T ss_pred CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHH-HcCCC---cE
Confidence 88999999999544 333333344577999999999843 32 34444444433 34543 57
Q ss_pred EEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcC
Q 022188 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 141 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
++++||+|.... ....+++.+.+ ++.++...+
T Consensus 149 IV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 149 ICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 889999996521 11334444444 666776665
No 256
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=4.2e-11 Score=99.04 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
..++..|+|+|++|+|||||+|+|++...........+ +. ......+..++++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i-----~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI-----TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE-----EEEecCCceEEEEeCCchH----------HHHHH
Confidence 44568899999999999999999997633111111111 11 1122467788999999832 23333
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCC
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~ 152 (301)
.+ ..+|++++++|+...+...+...+..+... +. | +++++||+|....
T Consensus 100 ~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 IA----KVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred HH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 33 345999999999877777777777776653 43 5 4559999998743
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.37 E-value=3.9e-11 Score=103.63 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=53.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------------eCCeeEEEEeCCC
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------------KDGQVVNVIDTPG 78 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG 78 (301)
|+|+|.+|+|||||+|+|++... .... .+..|.......... +....+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~-~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIAN-YPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccC-CCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999998764 2111 112222221111110 1234789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
+.........+...+...+ +.+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 8653222223444444444 4559999999997
No 258
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.2e-11 Score=106.65 Aligned_cols=137 Identities=19% Similarity=0.270 Sum_probs=94.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------------------------CcceeeEeEEEE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---------------------------------GVTKTCEMKTTV 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~---------------------------------~~t~~~~~~~~~ 64 (301)
+..+++++||..+|||||+-.|+ +..+.... +.|.......+.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLl----y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLL----YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhH----HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 45899999999999999998886 33332211 556655555544
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCcccc
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVF 137 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~ 137 (301)
.+...++++|+||.-| +..-+......+|+.++|+++... ..++.++. ..|...+|..
T Consensus 82 -t~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlGi~-- 146 (428)
T COG5256 82 -TDKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLGIK-- 146 (428)
T ss_pred -cCCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcCCc--
Confidence 4556899999999444 222222334566999999999844 33444443 4555566765
Q ss_pred CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
.+++++||+|..+-+...+++.... +..++..+|..
T Consensus 147 -~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 147 -QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred -eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 8999999999886555777777666 77777777754
No 259
>PTZ00258 GTP-binding protein; Provisional
Probab=99.35 E-value=9.9e-11 Score=103.07 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFD 81 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~ 81 (301)
...+|+|+|.||+|||||+|+|++.... . ...++.|...........+ ...+.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v-~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVP-A-ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCccc-c-cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3478999999999999999999987651 1 1123334333333222111 23589999999986
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
.......+...+...+. .+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir----~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIR----AVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHH----HCCEEEEEEeCC
Confidence 44333445555555544 559999999984
No 260
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=99.35 E-value=2.9e-11 Score=121.44 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc---C---CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC----CcHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS---A---GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEFV 89 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~---~---~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~ 89 (301)
+-.+|+|++|+||||+++.. |...+-.. . ...+.|.. +.+|-....++|||+|.+-+.. .+...
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 45899999999999999877 54432111 0 01122322 3445566778999999775443 23455
Q ss_pred HHHHHHHHhcc--CCCccEEEEEEecCCCCC--H--------HHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH
Q 022188 90 GKEIVKCLGMA--KDGIHAFLVVFSVTNRFS--Q--------EEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL 157 (301)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 157 (301)
+..+...+... .+.+|++|+++++.+-+. . .-+..+..+.+.+|..+ |+.+++||+|.... +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence 67777777765 357899999999983332 2 22556677777788777 99999999999844 7
Q ss_pred HHHhcc
Q 022188 158 EDFLGH 163 (301)
Q Consensus 158 ~~~~~~ 163 (301)
.+|...
T Consensus 260 ~~~f~~ 265 (1169)
T TIGR03348 260 EEFFAD 265 (1169)
T ss_pred HHHHHh
Confidence 777765
No 261
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.34 E-value=1.1e-10 Score=101.66 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC----------------eeEEEEeCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS 83 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (301)
.+|+|+|.||+|||||+|+|++... ... ..++.|...........+. ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~-nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eec-ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6799999999999999999999874 111 1223333333222221111 258999999998754
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
.....+..++...+ +.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 33344555555544 4559999999984
No 262
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.33 E-value=1.1e-10 Score=103.76 Aligned_cols=89 Identities=20% Similarity=0.139 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--------------------eeC---CeeEEEEeC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------LKD---GQVVNVIDT 76 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~---~~~~~liDt 76 (301)
.+|+|+|.+|+|||||+|+|++.... .. ..++.|......... .++ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~-~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IA-NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-cc-CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 57999999999999999999987642 11 112223222221111 011 245789999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
||+.........+...+...+. .+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9987643222334445554444 559999999996
No 263
>PTZ00416 elongation factor 2; Provisional
Probab=99.33 E-value=1e-11 Score=120.56 Aligned_cols=117 Identities=18% Similarity=0.265 Sum_probs=79.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEeeC----------CeeEE
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKD----------GQVVN 72 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~----------~~~~~ 72 (301)
+..++|+|+|+.++|||||+++|+...-...... ..+.|.......+. +. +..++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLY-YEHDLEDGDDKQPFLIN 95 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEE-eecccccccCCCceEEE
Confidence 4568999999999999999999986332111000 01222222222222 22 56789
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
++||||+.++ ..++... ...+|++++|+|+..++...+...++.+... + . |+++++||+|..
T Consensus 96 liDtPG~~~f-------~~~~~~a----l~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~--~--p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-------SSEVTAA----LRVTDGALVVVDCVEGVCVQTETVLRQALQE-R--I--RPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-------HHHHHHH----HhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C--C--CEEEEEEChhhh
Confidence 9999997763 2233333 4566999999999988888888887776654 2 2 899999999986
No 264
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.32 E-value=4.3e-12 Score=91.00 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+++|+.|+|||||+++|-|....... | +... +++. ..|||||.+-. .+....++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------T---QAve---~~d~--~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------T---QAVE---FNDK--GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------c---ceee---ccCc--cccCCchhhhh-------hhHHHHHHHH
Confidence 57999999999999999999987763322 1 1111 2221 37999996652 2345566666
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (301)
....+|++++|..+.++.+.-- -.+... ..+|+|-|+||.|+.+. ..++ . .+..+...|.
T Consensus 61 t~~dadvi~~v~~and~~s~f~----p~f~~~----~~k~vIgvVTK~DLaed--~dI~----~-----~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP----PGFLDI----GVKKVIGVVTKADLAED--ADIS----L-----VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCC----cccccc----cccceEEEEecccccch--HhHH----H-----HHHHHHHcCCc
Confidence 6788899999998874322111 112222 22379999999998754 2222 2 3444444553
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
+++. .++.+..++++|++.+...
T Consensus 122 ~IF~------~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 122 PIFE------TSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ceEE------EeccCcccHHHHHHHHHhh
Confidence 4444 5566678999999988653
No 265
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=3.7e-11 Score=90.17 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+++++|.+-+|||+|+...+......-.....++.-..............+.+|||.|. +.+......
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsitks 77 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSITKS 77 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHHHH
Confidence 689999999999999999998666522221111111111111122122347799999992 334445556
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
+|+..-++++|.|++++-+-+. ..|+....-..+.+..--+.+|.+|+|+...-..+.++ -..+...+|-
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aEklAa~hgM 148 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AEKLAASHGM 148 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HHHHHHhcCc
Confidence 6888899999999997766655 34555444444423211355778999976431111111 2345566777
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.++. .|++++.++++.+..+.+-+
T Consensus 149 ~FVE------TSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 149 AFVE------TSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred eEEE------ecccCCCcHHHHHHHHHHHH
Confidence 7666 89999999999988876543
No 266
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.30 E-value=2.1e-11 Score=118.54 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEee---------------C
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLK---------------D 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------------~ 67 (301)
...++|+|+|+.++|||||+++|+...-...... ..+.|.......+.+. .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3568999999999999999999985432111100 0123333333333311 2
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..++++||||..++ ..++...+ ..+|++++|+|+..++....+..++.+... .. |+++++||+
T Consensus 97 ~~~inliDtPGh~dF-------~~e~~~al----~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~--p~i~~iNK~ 160 (843)
T PLN00116 97 EYLINLIDSPGHVDF-------SSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE---RI--RPVLTVNKM 160 (843)
T ss_pred ceEEEEECCCCHHHH-------HHHHHHHH----hhcCEEEEEEECCCCCcccHHHHHHHHHHC---CC--CEEEEEECC
Confidence 567899999997663 22344444 455999999999988888888777766543 22 899999999
Q ss_pred CCC
Q 022188 148 DDL 150 (301)
Q Consensus 148 D~~ 150 (301)
|..
T Consensus 161 D~~ 163 (843)
T PLN00116 161 DRC 163 (843)
T ss_pred ccc
Confidence 987
No 267
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.1e-10 Score=86.71 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+++++|+.|+|||.|+........ ....+ ..+.+......+. ..+ ..+.+|||.| .+.+....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kDdss-HTiGveFgSrIin-VGgK~vKLQIWDTAG-----------QErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KDDSS-HTIGVEFGSRIVN-VGGKTVKLQIWDTAG-----------QERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-ccccc-ceeeeeecceeee-ecCcEEEEEEeeccc-----------HHHHHHHH
Confidence 5799999999999999999885543 33222 1111221111111 333 4679999999 23455555
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+|+++.+.++|.|++++-+-.. ..|+.-++.+.+..+ -++++.||.|+... ..+ .+++. ..-+
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~--R~V-tflEA---------s~Fa 141 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE--REV-TFLEA---------SRFA 141 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh--hhh-hHHHH---------Hhhh
Confidence 667899999999999996655555 345555555544433 56677899997544 111 11111 1112
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
....+.|- ..|+.++.++++.+-...
T Consensus 142 qEnel~fl---ETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 142 QENELMFL---ETSALTGENVEEAFLKCA 167 (214)
T ss_pred cccceeee---eecccccccHHHHHHHHH
Confidence 22222222 367788888888654443
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.29 E-value=1.8e-11 Score=117.30 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC--------------ccccCCCCCcceeeEeEE---EEeeCCeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~~~~~liDtPG~~ 80 (301)
..++|+|+|+.|+|||||+++|+...- +.......+.|....... ...+.+..+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 458999999999999999999973210 000000122233322211 123567889999999988
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
++. .+...++ ..+|++++|+|+..+........++.+... +. |.++++||+|....
T Consensus 98 ~f~-------~~~~~al----~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DFG-------GDVTRAM----RAVDGAIVVVCAVEGVMPQTETVLRQALKE-NV----KPVLFINKVDRLIN 153 (720)
T ss_pred ccH-------HHHHHHH----HhcCEEEEEEecCCCCCccHHHHHHHHHHc-CC----CEEEEEEChhcccc
Confidence 742 2333444 445999999999877777766666654432 22 77899999997643
No 269
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.2e-11 Score=92.35 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+++|-.||||||++..+--...+.+ .+|.-..+..+. +.+..+++||.-|-.. +...
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~k-----------~R~l 77 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQEK-----------LRPL 77 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCcc-----------cccc
Confidence 4568999999999999999998865554333 234444444444 5688999999999543 3334
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...+++..+++|||+|.+++..-.+ ....+.+...--. ..|++++.||.|...+ -+..+.-+. -.+-.
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~--~~~llv~aNKqD~~~a--ls~~ei~~~------L~l~~ 147 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELR--NAPLLVFANKQDLPGA--LSAAEITNK------LGLHS 147 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccC--CceEEEEechhhcccc--CCHHHHHhH------hhhhc
Confidence 5556788899999999984433333 3333444332211 2399999999997766 333332221 11111
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
-+...++. ..+.|.+|.|+.+-++++...+..
T Consensus 148 l~~~~w~i----q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 148 LRSRNWHI----QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCCCcEE----eeccccccccHHHHHHHHHHHHhc
Confidence 11222222 235667789999999999877643
No 270
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=8.9e-12 Score=97.98 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-EEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...|+|+|++|+|||+|+..|.......+-.+ . ..... ......+..+.+||+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS---~--e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS---M--ENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B------S--SEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc---c--cCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 36799999999999999999986643222211 1 11111 0111245689999999977632 2233321
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhC----ccccCeEEEEEeCCCCCCC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG----KNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~nk~D~~~~ 152 (301)
. +.+.+.+||||+|.+ .+...-+..-+.|...+. ....-|++|+.||.|...+
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 234569999999987 333322333333333221 1122399999999998755
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=7.4e-11 Score=103.12 Aligned_cols=169 Identities=20% Similarity=0.238 Sum_probs=112.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccc-------------cCCCCCcceeeEeEEEEee----CCeeEEEEeCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG 78 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG 78 (301)
....++..|+-|-..|||||..+|+.....-+ .....+.|.+.+.....+. ....+++|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34568999999999999999999874321100 0112377777766655533 235789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~ 158 (301)
.-|+.- ++.+++..+ .+.++|+|++.+...+.....-.. +..+. -++-|+||+|+... ..+
T Consensus 86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlA---le~~L--eIiPViNKIDLP~A---dpe 146 (603)
T COG0481 86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLA---LENNL--EIIPVLNKIDLPAA---DPE 146 (603)
T ss_pred ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHH---HHcCc--EEEEeeecccCCCC---CHH
Confidence 988754 566666666 889999999977766664433332 22343 68899999997655 222
Q ss_pred HHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCC
Q 022188 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~ 214 (301)
....+ +..++..-.... ..+||++|.|++++++.|-..+|...+.
T Consensus 147 rvk~e-----Ie~~iGid~~da------v~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 147 RVKQE-----IEDIIGIDASDA------VLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HHHHH-----HHHHhCCCcchh------eeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 22222 333332111222 2379999999999999999988765443
No 272
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=6.6e-10 Score=90.91 Aligned_cols=135 Identities=19% Similarity=0.258 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCc-------H
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS-------E 87 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~-------~ 87 (301)
..+|+.||.+|.|||||+++|++-.. .+.++ ..-+++......+.... .-.++++||.||+|-..-+ +
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 37899999999999999999997664 33332 22233333332222111 2367999999999843221 1
Q ss_pred HHHHHHHHHH----------hcc-CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188 88 FVGKEIVKCL----------GMA-KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (301)
Q Consensus 88 ~~~~~~~~~~----------~~~-~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (301)
.+..++..++ ..+ ..++|+.+|.+.++ +++...+...++.|... + ++|-++-|.|.... .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk----V--NIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK----V--NIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh----h--hhHHHHHHhhhhhH--H
Confidence 1222222222 111 35789999999887 66776776666665442 2 78888899997655 4
Q ss_pred cHHHHhc
Q 022188 156 TLEDFLG 162 (301)
Q Consensus 156 ~~~~~~~ 162 (301)
.+..|..
T Consensus 193 eL~~FK~ 199 (406)
T KOG3859|consen 193 ELKRFKI 199 (406)
T ss_pred HHHHHHH
Confidence 5554443
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.25 E-value=3.9e-11 Score=114.77 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=73.5
Q ss_pred EcCCCCcHHHHHHHHhCCCCcccc---C-------------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188 25 LGRTGNGKSATGNSILGRKAFKAS---A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (301)
Q Consensus 25 vG~~g~GKStlin~l~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (301)
+|+.|+|||||+++|+...-.... . ...+.|.......+. +++..+++|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHH------
Confidence 699999999999999543211000 0 012444444444444 68889999999997552
Q ss_pred HHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+....+ ..+|++++|+|++..........+..+... +. |+++++||+|....
T Consensus 74 -~~~~~~~l----~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~~----p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVERAL----RVLDGAVVVVCAVGGVEPQTETVWRQAEKY-GV----PRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHHHH----HHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 12333333 355999999999877776666666655442 32 89999999997644
No 274
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.25 E-value=6e-10 Score=96.41 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=63.8
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHH-HHHhhCccccCeEEEEEeC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~nk 146 (301)
+..+.||||+|...... .+ .. .+|.++++++.. ++.+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~~-------~i---~~----~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET-------AV---AG----MVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh-------HH---HH----hCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 56889999999886321 11 22 349999987633 2333322221 2222 34899999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+|+... ......... ++..+.... .+++ ..|+.++.|+++|++.+...++.
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi------~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVL------TCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 998755 333333333 333333211 2333 37888899999999999988764
No 275
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.1e-11 Score=107.47 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=132.6
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------------CCCcceeeEeEEEEeeCCeeEEEE
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------------SSGVTKTCEMKTTVLKDGQVVNVI 74 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~li 74 (301)
+.++.++|+++-+--+||||+-+.++- ..+.. ..+.|.......+. |....+.+|
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Ly----y~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~-w~~~~iNiI 109 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLY----YTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT-WRDYRINII 109 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeee----ecceeeeccccccCceeeehHHHHHhcCceeeeceeeee-eccceeEEe
Confidence 334678999999999999999998762 22211 11555555555444 889999999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (301)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~ 154 (301)
||||..|+.. ++.+++... |+.++|+++..+........++.++.. +. |.+..+||+|....
T Consensus 110 DTPGHvDFT~-------EVeRALrVl----DGaVlvl~aV~GVqsQt~tV~rQ~~ry-~v----P~i~FiNKmDRmGa-- 171 (721)
T KOG0465|consen 110 DTPGHVDFTF-------EVERALRVL----DGAVLVLDAVAGVESQTETVWRQMKRY-NV----PRICFINKMDRMGA-- 171 (721)
T ss_pred cCCCceeEEE-------Eehhhhhhc----cCeEEEEEcccceehhhHHHHHHHHhc-CC----CeEEEEehhhhcCC--
Confidence 9999999754 445555444 999999999878888888888887765 33 89999999999877
Q ss_pred ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh-hcCCC----CCchHHHHHHHHHHH
Q 022188 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV-QNGGQ----PYTDELKRGATELRD 229 (301)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~~~----~~~~~~~~~~~~~~~ 229 (301)
.....+..+..++......+.-+.... ....|+-+|++...-... .+++. ..+.++...+.+.
T Consensus 172 ---------~~~~~l~~i~~kl~~~~a~vqiPig~e-~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~-- 239 (721)
T KOG0465|consen 172 ---------SPFRTLNQIRTKLNHKPAVVQIPIGSE-SNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEK-- 239 (721)
T ss_pred ---------ChHHHHHHHHhhcCCchheeEcccccc-ccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHH--
Confidence 222224455555554333333222221 123444444443221111 11111 2466677777664
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022188 230 KKAEVDSLKEYSKREISKLMGQMQESY 256 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (301)
+++.++.+.+.++...+.+.++.+...
T Consensus 240 R~~LIE~lad~DE~l~e~fLee~~ps~ 266 (721)
T KOG0465|consen 240 RQALIETLADVDETLAEMFLEEEEPSA 266 (721)
T ss_pred HHHHHHHHhhhhHHHHHHHhccCCCCH
Confidence 777788888888887777777665443
No 276
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.24 E-value=4.6e-11 Score=88.11 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=93.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
....+.++|-.++|||||+|.++...... ...+|+-.....+. ...-.+.+||.||-..+ ....
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~t-kgnvtiklwD~gGq~rf-----------rsmW 82 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRF-----------RSMW 82 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEec-cCceEEEEEecCCCccH-----------HHHH
Confidence 34789999999999999999987433211 11234333444433 45568899999995542 2223
Q ss_pred hccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..+++++++++||+|+++ .++..-.+....|....- ...|++++.||.|..++ -.-.+.+.+ .. +. .
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~A--L~~~~li~r-mg--L~----s 151 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGA--LSKIALIER-MG--LS----S 151 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhh--cCCcEEEecccccCccc--ccHHHHHHH-hC--cc----c
Confidence 345789999999999983 232222222222222110 12399999999998765 222222222 00 11 1
Q ss_pred cCCc-eEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 CDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..+| ++-| ..|++...+++-+++|+.+.
T Consensus 152 itdREvcC~----siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 152 ITDREVCCF----SISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred cccceEEEE----EEEEcCCccHHHHHHHHHHH
Confidence 1122 1111 15777788999999998654
No 277
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.23 E-value=3.6e-11 Score=100.32 Aligned_cols=157 Identities=18% Similarity=0.184 Sum_probs=100.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
...|+++|.||+|||||+++|++....+... ...|.+..........|..+.+.||.||.+- .| ..++.++.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP-----~~LvaAF~ 249 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LP-----IQLVAAFQ 249 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhh-Cc-----HHHHHHHH
Confidence 3789999999999999999999776644331 1223332223334467899999999999862 22 23444443
Q ss_pred cc---CCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCcc---ccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 99 MA---KDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 99 ~~---~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~---~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
.+ ...+|.++.|+|++++.....+ ..+..|.++ |-. ....++=|-||+|.... +...
T Consensus 250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~-------~~e~-------- 313 (410)
T KOG0410|consen 250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEED-------EVEE-------- 313 (410)
T ss_pred HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccc-------cCcc--------
Confidence 32 2466999999999977766664 456666654 331 12245556777774432 1111
Q ss_pred HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.-++....|+.+|.|.+++++.++..+.
T Consensus 314 ----------E~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 ----------EKNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ----------ccCCccccccccCccHHHHHHHHHHHhh
Confidence 0111334788899999999999887654
No 278
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2e-09 Score=98.16 Aligned_cols=117 Identities=23% Similarity=0.343 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE----------------------------------------
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE---------------------------------------- 59 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~---------------------------------------- 59 (301)
.+|+|.|.+++||||++|+++.+.+.+++..+. +.+-
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~---TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHT---TNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCccccccc---ceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 689999999999999999999999888775432 1111
Q ss_pred ----eEEEEeeCC------eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHH
Q 022188 60 ----MKTTVLKDG------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129 (301)
Q Consensus 60 ----~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~ 129 (301)
...+.+.++ ..+.++|.||+.-.. +.-.++-.....+|++|+|+.+.+.++..++.++....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence 111221122 367899999988643 34445555566789999999999888888888777665
Q ss_pred HhhCccccCeEEEEEeCCCCCCC
Q 022188 130 NLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 130 ~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+- + .+++|+.||||....
T Consensus 259 ~~--K---pniFIlnnkwDasas 276 (749)
T KOG0448|consen 259 EE--K---PNIFILNNKWDASAS 276 (749)
T ss_pred cc--C---CcEEEEechhhhhcc
Confidence 43 2 278899999997644
No 279
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=6.5e-11 Score=99.79 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=57.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC----------------eeEEEEeCCCCCCCCCC
Q 022188 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~~~ 85 (301)
|+|+|.+|+|||||+|+|++... ... ..++.|...........+. ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~-n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccc-cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 58999999999999999999876 221 1223333333322221111 15899999999875444
Q ss_pred cHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
...++..+...+. .+|++++|+++.
T Consensus 79 ~~glg~~fL~~i~----~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHIR----EVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHHH----hCCEEEEEEeCc
Confidence 4445555555444 559999999874
No 280
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.22 E-value=9.5e-11 Score=96.30 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|+.|+||||..+.|.+...+ ......+.|.......+.......+.+||.||..+...+.. ..+. ...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p-~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~--~~~~----~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP-RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF--NSQR----EEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G-GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH--TCCH----HHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc-hhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc--cccH----HHH
Confidence 5899999999999999999976542 22233456666665554434566999999999876432200 0001 112
Q ss_pred CCCccEEEEEEecC-CCCCHHHHH---HHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 101 KDGIHAFLVVFSVT-NRFSQEEET---AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 101 ~~~~~~il~v~~~~-~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+.+++++|||+|+. ..+...-.. .+..+.+. ..++ ++.+++.|+|...+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH
Confidence 46779999999998 443333222 33333333 2233 89999999998755
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.22 E-value=2.4e-11 Score=116.76 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEeEEEEe---eCCeeEEEEeCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVL---KDGQVVNVIDTPGL 79 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~---~~~~~~~liDtPG~ 79 (301)
+..++|+|+|+.++|||||+.+|+...-...... ..+.|.......+.+ ..+..++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4568999999999999999999974321100000 012233332222221 13567899999998
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
.++. .++...+. .+|++++|+|+..+........+..+... +. |.++++||+|...
T Consensus 98 ~df~-------~~~~~~l~----~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFG-------GDVTRAMR----AVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred cChH-------HHHHHHHH----hcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 8842 24444444 44999999999877777777777765443 33 7789999999763
No 282
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.5e-09 Score=89.37 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=82.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------eC-------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KD------------------- 67 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~------------------- 67 (301)
...-|+++|+-..||||||+.|+..........+.+.|......-... .+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 457899999999999999999998886433333333332222111000 00
Q ss_pred ---------CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCcccc
Q 022188 68 ---------GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVF 137 (301)
Q Consensus 68 ---------~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~ 137 (301)
-..+++|||||+.+.....-.-.-.+...+.....++|.|++++|+. -.++.+-.+.+..|+ |.+-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed- 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED- 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc-
Confidence 14789999999987543211111122333333456789999999998 445555566666665 3332
Q ss_pred CeEEEEEeCCCCCCC
Q 022188 138 DYMIVVFTGGDDLED 152 (301)
Q Consensus 138 ~~~ilv~nk~D~~~~ 152 (301)
.+-||+||.|.++.
T Consensus 213 -kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 -KIRVVLNKADQVDT 226 (532)
T ss_pred -eeEEEeccccccCH
Confidence 78899999998876
No 283
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.21 E-value=3.7e-10 Score=98.62 Aligned_cols=176 Identities=16% Similarity=0.265 Sum_probs=107.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
+.++|+|+-|...|||||+..|+.+.- |... ....+.|.-..-..+. |++..++++||||.-|+-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~-~~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVN-YNGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceee-cCCeEEEEecCCCcCCcc
Confidence 458999999999999999999986542 1110 0011444443333334 889999999999999986
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC-ccccHHHHhc
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED-HEKTLEDFLG 162 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~-~~~~~~~~~~ 162 (301)
+ ++.+.++.. |++++++|+..+..++.+..++...+. |- +-|+|+||+|.... +...+++.++
T Consensus 83 G-------EVERvl~MV----DgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~Arp~~Vvd~vfD 146 (603)
T COG1217 83 G-------EVERVLSMV----DGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDARPDEVVDEVFD 146 (603)
T ss_pred c-------hhhhhhhhc----ceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCCCHHHHHHHHHH
Confidence 6 555555544 999999999978888887776655443 32 56789999998755 2122222111
Q ss_pred ccCCchHHHHHHHcCCceEEecCCCcc----cccchhHHHHHHHHHHHHHhhcC
Q 022188 163 HECPKPLKEILQLCDNRCVLFDNKTKD----EAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
- --.+..--+.+.+++..-+..... ......++..|++.|.+.++...
T Consensus 147 L--f~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 147 L--FVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred H--HHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 1 000111112334444332222111 11223568889999988877543
No 284
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.20 E-value=8e-10 Score=89.04 Aligned_cols=161 Identities=24% Similarity=0.216 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|.+|+|||++.....+...... ..+|....+......++ ..+.++||+|...+.. .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~----y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~-----------~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED----YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA-----------M 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc----cCCCccccceEEEEECCEEEEEEEEcCCCcccChH-----------H
Confidence 37899999999999999988887665222 22333222222222333 3668999999444321 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+....|++++|.+++++-+-++. .++..+....+. ..-|+++|.||+|+...-....++ -..+...
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~ 137 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS 137 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence 12234556999999999977666663 344444333332 224999999999987531122221 1233344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +||+...++++++..+...+..
T Consensus 138 ~~~~f~E------~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFIE------TSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEEE------eeccCCcCHHHHHHHHHHHHHh
Confidence 4444554 7887778999999888776554
No 285
>PRK13768 GTPase; Provisional
Probab=99.17 E-value=3.2e-10 Score=95.35 Aligned_cols=130 Identities=19% Similarity=0.156 Sum_probs=74.1
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..+.+|||||....... ......+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999997653321 223344555554322 799999999985555555433333321100011239999999999
Q ss_pred CCCCccccHHHHhcccCC--------------------chHHHHHHHcC--CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 149 DLEDHEKTLEDFLGHECP--------------------KPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.... ...+..... .. ..+-..+...+ .++++ .|+.++.++++|++++.+
T Consensus 174 ~~~~--~~~~~~~~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~ 244 (253)
T PRK13768 174 LLSE--EELERILKW-LEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQE 244 (253)
T ss_pred hcCc--hhHHHHHHH-HhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHH
Confidence 8865 333332221 11 00111222333 23344 667778999999999988
Q ss_pred HHhh
Q 022188 207 VIVQ 210 (301)
Q Consensus 207 ~~~~ 210 (301)
.++-
T Consensus 245 ~l~~ 248 (253)
T PRK13768 245 VFCG 248 (253)
T ss_pred HcCC
Confidence 8754
No 286
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=5.3e-10 Score=96.98 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=94.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh--CCCCccccCC------------------CCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~--g~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (301)
..++.+||-||.+|||||-..|+ |.-....|.. ..++++...+..+. +.+..++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCCC
Confidence 45789999999999999998865 2111111110 11555555555555 789999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccH
Q 022188 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL 157 (301)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~ 157 (301)
|..|++. .-.+.+... |..+.|+|+..++....+.+++.-+.. + . |++.++||+|.... ..+
T Consensus 90 GHeDFSE-------DTYRtLtAv----DsAvMVIDaAKGiE~qT~KLfeVcrlR-~--i--PI~TFiNKlDR~~r--dP~ 151 (528)
T COG4108 90 GHEDFSE-------DTYRTLTAV----DSAVMVIDAAKGIEPQTLKLFEVCRLR-D--I--PIFTFINKLDREGR--DPL 151 (528)
T ss_pred Cccccch-------hHHHHHHhh----heeeEEEecccCccHHHHHHHHHHhhc-C--C--ceEEEeeccccccC--ChH
Confidence 9999754 333444333 999999999988888887776654433 3 3 99999999998755 222
Q ss_pred HHHhcccCCchHHHHHHHcCCceEEecCCC
Q 022188 158 EDFLGHECPKPLKEILQLCDNRCVLFDNKT 187 (301)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 187 (301)
+ . +.++-..++..+++++-+.
T Consensus 152 E-L--------LdEiE~~L~i~~~PitWPI 172 (528)
T COG4108 152 E-L--------LDEIEEELGIQCAPITWPI 172 (528)
T ss_pred H-H--------HHHHHHHhCcceecccccc
Confidence 2 1 3344445566666655443
No 287
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.15 E-value=2.4e-10 Score=83.79 Aligned_cols=163 Identities=19% Similarity=0.130 Sum_probs=97.7
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
++.....+|+++|-.++|||||++.|.++.+...-+.....+ ....+.....+++||.-|--. +
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~-----k~v~~~g~f~LnvwDiGGqr~-----------I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT-----KKVEYDGTFHLNVWDIGGQRG-----------I 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce-----EEEeecCcEEEEEEecCCccc-----------c
Confidence 344667999999999999999999999988633322222222 223323457899999988333 5
Q ss_pred HHHHhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
..+++.+|..+|++|||+|.++ ++........+.+.+.--..+ |+++.-||-|++.. ...++.-.. .
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~v--pvlIfankQdllta--a~~eeia~k-l------ 144 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEV--PVLIFANKQDLLTA--AKVEEIALK-L------ 144 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhcc--ceeehhhhhHHHhh--cchHHHHHh-c------
Confidence 5667778889999999999763 333222333343333211123 89999999998765 444432221 1
Q ss_pred HHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
-+.....|...+. .+++....++.+-.+|+..
T Consensus 145 nl~~lrdRswhIq---~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 145 NLAGLRDRSWHIQ---ECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred chhhhhhceEEee---eCccccccCccCcchhhhc
Confidence 1222233433322 2444455566665666543
No 288
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.9e-11 Score=88.30 Aligned_cols=160 Identities=13% Similarity=0.079 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee--------CCeeEEEEeCCCCCCCCCCcHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGSEFVGK 91 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~~liDtPG~~~~~~~~~~~~~ 91 (301)
++.+.+|.+|+|||||+-..+.......-.+..++.-+.....+... ....+.+|||.|. +
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-----------E 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-----------E 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccH-----------H
Confidence 45788999999999999887755432221222222111111111111 1136789999992 2
Q ss_pred HHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHh--hCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNL--FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~--~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 168 (301)
.+.......++.+-++++++|+++.-+-.. +.|+..|+-. +..+ -++++.||+|+.+. ..+.+..
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~P---DivlcGNK~DL~~~--R~Vs~~q------- 146 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENP---DIVLCGNKADLEDQ--RVVSEDQ------- 146 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCC---CEEEEcCccchhhh--hhhhHHH-------
Confidence 333333445688899999999984443333 4566555543 2222 48888999997644 2222211
Q ss_pred HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+..+.+.+|+. .||-++.++.+.++.+..++
T Consensus 147 a~~La~kyglPYfE------TSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 147 AAALADKYGLPYFE------TSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHHhCCCeee------eccccCcCHHHHHHHHHHHH
Confidence 45678888999988 67777777777666665554
No 289
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.14 E-value=5.2e-10 Score=100.20 Aligned_cols=175 Identities=16% Similarity=0.155 Sum_probs=109.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
...||+|+|..|+||||||-+|+.....+..+...+ ++.- .... .......++||+.-.+. .. .+...
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advt-Pe~vpt~ivD~ss~~~~---~~----~l~~E 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVT-PENVPTSIVDTSSDSDD---RL----CLRKE 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccC-cCcCceEEEecccccch---hH----HHHHH
Confidence 348999999999999999999999887555433222 1111 1111 44556899999843321 11 22222
Q ss_pred HhccCCCccEEEEEEecCC--CCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.+.+|+++++...++ .+......||-.+++.+|.....|+|+|.||.|.......+++..+ ..++.
T Consensus 77 ----irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~--------~pim~ 144 (625)
T KOG1707|consen 77 ----IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT--------LPIMI 144 (625)
T ss_pred ----HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH--------HHHHH
Confidence 344599999987773 3444456788889999888778899999999998765323223211 11111
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDE 219 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~ 219 (301)
.+. ....-..+||+...++.+++....+.+-..-+..|..+
T Consensus 145 ~f~----EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~ 185 (625)
T KOG1707|consen 145 AFA----EIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAE 185 (625)
T ss_pred HhH----HHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccc
Confidence 110 11112237888888899998888777655444445433
No 290
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.4e-10 Score=96.19 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=114.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.|+-.|+--.|||||+.+++|...-. ......+.|.+...+... ..+..+.+||.||..+ ++..+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcHH-----------HHHHHHh
Confidence 58899999999999999999865411 112244677777776655 4455889999999766 3333444
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
....+|..++|+++++++..+..+.+..|.. +|.. +.++++||+|..+. ..+++.+.+ ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 4567799999999988999998888877754 5764 78999999998876 556555544 333222
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..-.+....|+..+.|+++|.+.|..+.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 1111223478888999999999998887
No 291
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.1e-09 Score=78.81 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+.+|-.++||||++-.|.-... . ..-+|+-..+..+. +.+..+.+||.-|-. .+...+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~----~-~~ipTvGFnvetVt-ykN~kfNvwdvGGqd-----------~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS----V-TTIPTVGFNVETVT-YKNVKFNVWDVGGQD-----------KIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC----c-ccccccceeEEEEE-eeeeEEeeeeccCch-----------hhhHHH
Confidence 468999999999999999988863322 1 11223333333333 677889999998833 456667
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCC-ccccHHHHhcccCCchHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~-~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..++++..++|||+|..++ ...+... ..|....+.+ -.-+++++.||-|+..+ .-.++.+++.- +
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL----------e 146 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL----------E 146 (180)
T ss_pred HhhccCCceEEEEEeccch-hhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc----------c
Confidence 7788999999999998844 2222111 1222222222 11278888999998765 11333333332 1
Q ss_pred Hc-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.. +.++++ .++++.++.++.+=+.|+...+
T Consensus 147 ~~r~~~W~v----qp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYV----QPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEe----eccccccchhHHHHHHHHHhhc
Confidence 12 223333 2356667888888888876644
No 292
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5.4e-09 Score=76.64 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=91.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+.+|+|.-|+|||.|+..++.+.....-+ ....+......+. ..+ ..+.+|||.|. +.+...
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcp--htigvefgtriie-vsgqkiklqiwdtagq-----------erfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIE-VSGQKIKLQIWDTAGQ-----------ERFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCC--cccceecceeEEE-ecCcEEEEEEeecccH-----------HHHHHH
Confidence 4688999999999999999998766532221 1112221111122 333 36799999992 233344
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+++++.+.++|.|++.+-+-.. ..|+.-.+.+-..+ .-++++.||.|+....+...++ .+.+.+.
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faee 145 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEE 145 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhh
Confidence 4556899999999999983333332 23444444432222 1466789999975432233332 2334444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.|.-... .|++++.++++.+-...+
T Consensus 146 ngl~fle------~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 146 NGLMFLE------ASAKTGQNVEDAFLETAK 170 (215)
T ss_pred cCeEEEE------ecccccCcHHHHHHHHHH
Confidence 3433333 678888888875544333
No 293
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.2e-09 Score=105.30 Aligned_cols=230 Identities=17% Similarity=0.176 Sum_probs=129.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCC----CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC----CcHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-AGS----SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA----GSEFVG 90 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~----~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~~ 90 (301)
+-.+|||++|+||||++... |...+-.. ... ...|.. +.++-+..-++|||.|-+-... .+..-+
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~-----cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRN-----CDWWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcc-----cCcccccceEEEcCCcceecccCcchhhHHHH
Confidence 34799999999999988653 33221111 110 111333 3456677889999999776553 233344
Q ss_pred HHHHHHHhcc--CCCccEEEEEEecCCCC--CHHH--------HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHH
Q 022188 91 KEIVKCLGMA--KDGIHAFLVVFSVTNRF--SQEE--------ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (301)
Q Consensus 91 ~~~~~~~~~~--~~~~~~il~v~~~~~~~--~~~~--------~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~ 158 (301)
.-+...++.. .+.+|+||+.+++.+-. +..+ +.+++.+.+.++... |+++++||.|++ ..++
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll----~GF~ 273 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLL----PGFE 273 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccc----ccHH
Confidence 5566666654 46789999999997322 2222 234666777777766 999999999998 4477
Q ss_pred HHhcccCCchHHHHHHHcCCceEEecCCCcc--cccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhHHHHHH
Q 022188 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKD--EAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDS 236 (301)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (301)
+|... .++..+ +..-+-.++++..... -+.-...+..|.+.+...+.. .+.+
T Consensus 274 efF~~-l~~~~r---~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~--------rl~~-------------- 327 (1188)
T COG3523 274 EFFGS-LNKEER---EQVWGVTFPLDARRNANLAAELEQEFRLLLDRLNAQLVE--------RLQQ-------------- 327 (1188)
T ss_pred HHHhc-cCHHHH---hhhceeccccccccccchHHHHHHHHHHHHHHHHHHHHH--------HHHh--------------
Confidence 77775 433222 2222333343332210 001112223333333322221 0000
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCccccc
Q 022188 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNC 295 (301)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (301)
+........--.+.+++..+.+.+.+.++.+.-. .+......-+|.||||-
T Consensus 328 -------e~~~~~R~~l~~Fp~q~~~l~~~l~~~le~lf~~-~~~~~~~~LRG~yftS~ 378 (1188)
T COG3523 328 -------ERDLEQRGRLLSFPRQLAGLRERLREFLEGLFDA-SPYQENPLLRGLYFTSA 378 (1188)
T ss_pred -------cccHHHHHHHHHHHHHHHhhHhHHHHHHHHHhcc-Chhhccceeeeeeeccc
Confidence 0000001111225566667777777777777653 47778889999999985
No 294
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.08 E-value=2.4e-09 Score=88.38 Aligned_cols=106 Identities=21% Similarity=0.147 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeeEeEEEEee--CCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
+...|+|+|++++|||||+|.|+|. ..|..+......|...-....... .+..+.++||||+.+....... .....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~-~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFE-DDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchh-hhhHH
Confidence 4468999999999999999999998 356655544444544333322211 3578999999999987654301 11112
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l 128 (301)
.++... -.+++||.++.. ........+..+
T Consensus 85 ~~l~~l--lss~~i~n~~~~--~~~~~~~~l~~~ 114 (224)
T cd01851 85 FALATL--LSSVLIYNSWET--ILGDDLAALMGL 114 (224)
T ss_pred HHHHHH--HhCEEEEeccCc--ccHHHHHHHHHH
Confidence 222210 128888887765 334444444433
No 295
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.7e-09 Score=94.90 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEeEEEEeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~~ 68 (301)
.....+++|+..+|||||+-.|+-..-.. .| ....++|.......+. ...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe-s~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE-SKS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-cCc
Confidence 45789999999999999998875221100 00 0111556655555554 567
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-CCCCH------HHHHHHHHHHHhhCccccCeEE
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQ------EEETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~------~~~~~l~~l~~~~~~~~~~~~i 141 (301)
..++|+|+||..++.. .+.. ....+|+.++|+|++ +.|.. +.++.. .+...+|.. .++
T Consensus 255 ~~~tliDaPGhkdFi~-------nmi~----g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi~---qli 319 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIP-------NMIS----GASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGIS---QLI 319 (603)
T ss_pred eeEEEecCCCccccch-------hhhc----cccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCcc---eEE
Confidence 7899999999777532 2222 234569999999998 32221 233443 444456754 899
Q ss_pred EEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcCC
Q 022188 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN 178 (301)
Q Consensus 142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 178 (301)
|++||+|...-+...+++.... +..++ ..||+
T Consensus 320 vaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~gf 352 (603)
T KOG0458|consen 320 VAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCGF 352 (603)
T ss_pred EEeecccccCccHHHHHHHHHH-----HHHHHHHhcCc
Confidence 9999999987655777776665 77776 66763
No 296
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4e-10 Score=85.68 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc-cC--CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-SA--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...|+|+|.-+||||||+.++-....-.. +. +...+|+........ .....+.+||.-|-. ...+
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgGQe-----------~lrS 84 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGGQE-----------SLRS 84 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCChH-----------HHHH
Confidence 36799999999999999987643221111 11 111223333333333 557789999998821 2222
Q ss_pred HHhccCCCccEEEEEEecCC--CCCHHHHHHHHHH-HHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l-~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
....+|..+|+++|++|+.+ |+.... ..++.+ ..-.-..+ |++++.||-|.... .+..+.-. .+..
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~-t~~~~v~~~E~leg~--p~L~lankqd~q~~--~~~~El~~-----~~~~- 153 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESK-TAFEKVVENEKLEGA--PVLVLANKQDLQNA--MEAAELDG-----VFGL- 153 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHH-HHHHHHHHHHHhcCC--chhhhcchhhhhhh--hhHHHHHH-----Hhhh-
Confidence 33345677799999999984 333222 222222 21111123 99999999997655 33332111 1221
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+..+.|..+|. ++|+..+.|+.+-+.|+...++.+
T Consensus 154 ~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 154 AELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 333344544444 478888999999999998888765
No 297
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2.7e-09 Score=90.34 Aligned_cols=142 Identities=12% Similarity=0.151 Sum_probs=97.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc--cc------cCC-----------------------CCCcceeeEeEEEEee
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KA------SAG-----------------------SSGVTKTCEMKTTVLK 66 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~--~~------~~~-----------------------~~~~t~~~~~~~~~~~ 66 (301)
..+|++-+|...-||||||-+|+-.... +. ..+ ..+.|....+..+. -
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs-T 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS-T 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-c
Confidence 4589999999999999999998754321 00 000 01667766655444 4
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
..+.+.+.||||.. ++.+-+..-..-+|+.++++|+..++-.+.++ -..+..++|.. ++++.+||
T Consensus 84 ~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVNK 148 (431)
T COG2895 84 EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVNK 148 (431)
T ss_pred ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEee
Confidence 67789999999933 23333333344569999999998666555544 45667778876 89999999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (301)
+|+.+-+.+.+++...+ +..+....+...
T Consensus 149 mDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~ 177 (431)
T COG2895 149 MDLVDYSEEVFEAIVAD-----YLAFAAQLGLKD 177 (431)
T ss_pred ecccccCHHHHHHHHHH-----HHHHHHHcCCCc
Confidence 99986655677777666 667777777543
No 298
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.06 E-value=4.7e-10 Score=87.64 Aligned_cols=56 Identities=27% Similarity=0.344 Sum_probs=40.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
..+|+++|.+|+|||||+|+|.+.....++..+ +.|+..... ..+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYI----TLMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEE----EcCCCEEEEECcCC
Confidence 478999999999999999999998775554332 334433322 22345899999995
No 299
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=6.2e-09 Score=89.55 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-----------------CCeeEEEEeCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDL 82 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~~ 82 (301)
.+++|||.||+|||||+|+++.... .....+.+|........... -.-.+.++|.+|+-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6799999999999999999997663 22222334444332221111 1136789999998765
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
....+-++.++..-+. .+|+++.|+++.
T Consensus 81 As~GeGLGNkFL~~IR----evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence 4444455666666554 559999999987
No 300
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.03 E-value=1.9e-10 Score=88.64 Aligned_cols=62 Identities=31% Similarity=0.315 Sum_probs=37.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCcc-eeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVT-KTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~~t-~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (301)
.+++++|++|||||||+|+|++.....++.. ....| +....+. . .....|||||||.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~---l-~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP---L-PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE---E-TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe---c-CCCcEEEECCCCCccccc
Confidence 7899999999999999999999865544321 11223 3333332 2 234589999999887654
No 301
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.1e-09 Score=92.60 Aligned_cols=141 Identities=20% Similarity=0.305 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh---CCCCcccc-------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
+.++|+|+.+..+||||...+|+ |....... ....+.|.......+. |.|..+.+|||||.-|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fd-wkg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFD-WKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecc-cccceEeeecCCCcce
Confidence 35799999999999999998875 21110000 1112667777666655 9999999999999988
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
+.. ++.+++... |+++.|+|++.+........|+.... | .+ |.+.++||+|.... .++
T Consensus 115 f~l-------everclrvl----dgavav~dasagve~qtltvwrqadk-~--~i--p~~~finkmdk~~a---nfe--- 172 (753)
T KOG0464|consen 115 FRL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADK-F--KI--PAHCFINKMDKLAA---NFE--- 172 (753)
T ss_pred EEE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhccc-c--CC--chhhhhhhhhhhhh---hhh---
Confidence 754 455555544 99999999997777777666655433 2 22 89999999997755 222
Q ss_pred cccCCchHHHHHHHcCCceEEecCC
Q 022188 162 GHECPKPLKEILQLCDNRCVLFDNK 186 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~~~ 186 (301)
-++..+-++.+.+...+.-+
T Consensus 173 -----~avdsi~ekl~ak~l~l~lp 192 (753)
T KOG0464|consen 173 -----NAVDSIEEKLGAKALKLQLP 192 (753)
T ss_pred -----hHHHHHHHHhCCceEEEEec
Confidence 22555667777776555443
No 302
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=3.4e-10 Score=86.34 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE-eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
+..++++|+|..++||||+|.+.+.... ..+. .....+..-..... ...+..+.+|||.|.. ++-.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgif-Tkdy-kktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDa 84 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDY-KKTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDA 84 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccc-cccc-ccccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHH
Confidence 3457899999999999999999984332 2221 11111110000000 0123355799999933 3333
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....+|+++.+.++|++.+++.+-+. ..+.+.+..-.+. + |.++|-||+|+.+. ..+.. .....+..
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~-I--PtV~vqNKIDlved--s~~~~-------~evE~lak 152 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER-I--PTVFVQNKIDLVED--SQMDK-------GEVEGLAK 152 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc-C--CeEEeeccchhhHh--hhcch-------HHHHHHHH
Confidence 33456899999999999997777665 4555566655554 3 99999999998765 22211 11233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
....|.+. .|.+..-++...+..+...
T Consensus 153 ~l~~RlyR------tSvked~NV~~vF~YLaeK 179 (246)
T KOG4252|consen 153 KLHKRLYR------TSVKEDFNVMHVFAYLAEK 179 (246)
T ss_pred Hhhhhhhh------hhhhhhhhhHHHHHHHHHH
Confidence 44555554 5666666777766666543
No 303
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.6e-09 Score=89.29 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEe-------------------------eCCeeEE
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-------------------------KDGQVVN 72 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~-------------------------~~~~~~~ 72 (301)
..+|+.+||...|||||..+|+|.-.-. +.....+.|.+..+..... .--+.+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 4899999999999999999999854311 1111112222221111000 0125788
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHH-HHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
++|.||..- +...+.+-..--|+.++|+.++.+.-.. .++-|..| +..|.. +++++=||+|+.+
T Consensus 90 fVDaPGHe~-----------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik---~iiIvQNKIDlV~ 154 (415)
T COG5257 90 FVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIK---NIIIVQNKIDLVS 154 (415)
T ss_pred EeeCCchHH-----------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccc---eEEEEecccceec
Confidence 999999221 1222222222349999999998554333 34444433 344554 8999999999876
Q ss_pred CccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 152 DHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
. +...+...+ +++++... +.++++ .||..+.+++.|++.|.+.++.
T Consensus 155 ~--E~AlE~y~q-----Ik~FvkGt~Ae~aPIIP------iSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 155 R--ERALENYEQ-----IKEFVKGTVAENAPIIP------ISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred H--HHHHHHHHH-----HHHHhcccccCCCceee------ehhhhccCHHHHHHHHHHhCCC
Confidence 5 333333332 44444322 234444 8888999999999999998875
No 304
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=9e-10 Score=86.95 Aligned_cols=56 Identities=32% Similarity=0.415 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
..+++++|.+|+|||||+|+|+|.....++.. ++.|...+... . +..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~---~-~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH---L-DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE---e-CCCEEEEECcCC
Confidence 47999999999999999999999887555433 34454443322 2 346899999995
No 305
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=9.1e-09 Score=85.06 Aligned_cols=171 Identities=17% Similarity=0.221 Sum_probs=106.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC---------ccccC-----CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA---------FKASA-----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~---------~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
+..+|+.+|+...|||||..+|++.-. +.... ...+.|.......+. ...+.+..+|+||.-|
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD-- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH--
Confidence 448999999999999999999875321 11110 122555555444444 4677889999999555
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
..+.++... -..|+.|+|+.++++..++.++-+-..++ .|.+ .+++++||+|..+. .++-+.++.
T Consensus 88 -----YvKNMItgA----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelVem 152 (394)
T COG0050 88 -----YVKNMITGA----AQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELVEM 152 (394)
T ss_pred -----HHHHHhhhH----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHHHH
Confidence 122222222 24499999999987777777765544444 4654 57888999999876 555554443
Q ss_pred cCCchHHHHHHHcCCc--eEEecCCCc-----ccccchhHHHHHHHHHHHHHhh
Q 022188 164 ECPKPLKEILQLCDNR--CVLFDNKTK-----DEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 164 ~~~~~l~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++++...+.+ ..++-.... ..+.....+.+|++.++..++.
T Consensus 153 ----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 153 ----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred ----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 267788777643 222211111 1112235577888888777654
No 306
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.98 E-value=1.3e-07 Score=81.77 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=57.8
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.|+||||...... ..+ ..+|.++++.... +..+...+. ...... |.++++||+
T Consensus 126 g~D~viidT~G~~~~e~----------~i~----~~aD~i~vv~~~~---~~~el~~~~--~~l~~~----~~ivv~NK~ 182 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV----------DIA----NMADTFVVVTIPG---TGDDLQGIK--AGLMEI----ADIYVVNKA 182 (300)
T ss_pred CCCEEEEeCCCCchhhh----------HHH----HhhceEEEEecCC---ccHHHHHHH--HHHhhh----ccEEEEEcc
Confidence 57789999999765211 111 2237777774332 223322211 122222 789999999
Q ss_pred CCCCCccccHHHHhcccCCchHHHHHHH---cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 148 DDLEDHEKTLEDFLGHECPKPLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
|.... ......... ....+..+... +..+++ .+|+.++.++++|++++.....
T Consensus 183 Dl~~~--~~~~~~~~~-~~~~l~~l~~~~~~~~~~v~------~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 183 DGEGA--TNVTIARLM-LALALEEIRRREDGWRPPVL------TTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cccch--hHHHHHHHH-HHHHHhhccccccCCCCCEE------EEEccCCCCHHHHHHHHHHHHH
Confidence 98755 221110000 00001111111 112233 3788899999999999987654
No 307
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.97 E-value=8.8e-09 Score=100.81 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=74.5
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCCCCCCCC
Q 022188 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 23 ~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~ 85 (301)
+|+++ ||||+.+|.+-.+... -..+.|.+...+.+..... ..+.+|||||...+
T Consensus 469 ~~~~~----KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--- 539 (1049)
T PRK14845 469 GILVH----NTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--- 539 (1049)
T ss_pred eeecc----cccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH---
Confidence 45554 9999999999887333 3457787776665442211 13799999995432
Q ss_pred cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
.......+..+|++++|+|+++++.......+..+... + . |+++++||+|...
T Consensus 540 --------~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~--i--PiIVViNKiDL~~ 592 (1049)
T PRK14845 540 --------TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K--T--PFVVAANKIDLIP 592 (1049)
T ss_pred --------HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C--C--CEEEEEECCCCcc
Confidence 11122235667999999999877888887777776653 3 2 8999999999863
No 308
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.97 E-value=6.9e-10 Score=80.52 Aligned_cols=156 Identities=12% Similarity=0.109 Sum_probs=96.6
Q ss_pred EEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccC
Q 022188 24 LLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (301)
Q Consensus 24 lvG~~g~GKStlin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (301)
++|.+++|||.|+-+.-.... -.+ .+..++..+....... .....+.+|||.|. +.+......+|
T Consensus 2 llgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~-~~kvklqiwdtagq-----------erfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQ-----------ERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccC-CcEEEEEEeeccch-----------HHHhhhhHhhh
Confidence 689999999998744321111 111 1122222222222111 12246799999992 23444445578
Q ss_pred CCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCce
Q 022188 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (301)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (301)
+.+|+++++.|+.++.+-.. +.|+..+.+.....+ .++++.||+|.... ..+..+. -..+.+..+.+.
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~dd---g~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRDD---GEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccch---HHHHHHHHCCCc
Confidence 99999999999997777766 567888888655545 68899999997543 1111111 234445556555
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.. .|++++-+++..+-.|.+.+.
T Consensus 138 me------tsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 138 ME------TSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ee------ccccccccHhHHHHHHHHHHH
Confidence 54 889999999988777765544
No 309
>PTZ00099 rab6; Provisional
Probab=98.96 E-value=2e-08 Score=79.90 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=72.4
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
..+.+|||||... +......+++++|++|+|+|++++-+-.. ..++..+....+... |+++|.||+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~--piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDV--IIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECc
Confidence 4678999999543 22223345678899999999985433333 345554544333333 899999999
Q ss_pred CCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 148 D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
|+........++ ........+..++. +||+++.++.+++++|...++.
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~e------~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFHE------TSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 975331011111 12233333444444 8999999999999999988765
No 310
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.94 E-value=7.5e-09 Score=81.98 Aligned_cols=163 Identities=20% Similarity=0.157 Sum_probs=101.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-Ce--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.++++|||..++|||+++-..+.. .|+..- .+|+..........+ +. .+.+|||.|..+.+ . .+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------r-lR 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------R-LR 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCcccc---cCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------c-cc
Confidence 378999999999999999888754 344432 334443333223343 54 56899999977642 1 11
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC-----Cch
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC-----PKP 168 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~-----~~~ 168 (301)
..+|+..|+|++++++.++.+-+. ..|+-.++..++. + |+++|.+|.|+-+. ....+.+.... ...
T Consensus 71 --plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~-v--piiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 71 --PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN-V--PIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred --ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC-C--CEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence 347899999999999986666554 5577777776643 3 99999999997644 21211221100 011
Q ss_pred HHHHHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 169 LKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 169 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
...+....| .+++. +|+....++.+.++.....
T Consensus 144 g~~lA~~iga~~y~E------cSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 144 GLELAKEIGAVKYLE------CSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred HHHHHHHhCcceeee------ehhhhhCCcHHHHHHHHHH
Confidence 233444445 34444 6777777777777665443
No 311
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.94 E-value=4.1e-08 Score=87.55 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=87.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------------------------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--------------------------------------------- 52 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~--------------------------------------------- 52 (301)
.-++|+|||.-.+||||.+.++.....|+-|.+.-
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 34899999999999999999999988888764322
Q ss_pred -------CcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHH
Q 022188 53 -------GVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120 (301)
Q Consensus 53 -------~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 120 (301)
+.|+...+.... +.| ..++++|.||+..+... ..+....+......+...|++||+|+.-. ....+
T Consensus 387 Mr~sVr~GkTVSnEvIslt-VKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLN-VKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE 464 (980)
T ss_pred HHhcccCCcccccceEEEe-ecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence 445554444443 333 46799999999875532 24445566666666678999999999654 33333
Q ss_pred HHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
-...-..+.+.- +.-+..|+|+||.|+++.
T Consensus 465 RSnVTDLVsq~D--P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMD--PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcC--CCCCeeEEEEeecchhhh
Confidence 222223333331 122379999999998754
No 312
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=7.2e-09 Score=95.12 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------eCCeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~ 81 (301)
.+.++|+||..+|||-|+..|-+.++.... ..+.|.......+.. ..-..+.+|||||...
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 467999999999999999999988774433 233443333221110 1124678999999554
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC----ccccH
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----HEKTL 157 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~----~~~~~ 157 (301)
+ .+.-.....-+|.+|+|+|+.+++.+.....+..|+.. .. |+||.+||+|.+.. +...+
T Consensus 553 F-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 553 F-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred h-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCchH
Confidence 3 11111123345999999999999999998888888765 33 99999999998733 22233
Q ss_pred HHHhcc-------cCCchHHHHHHHc---CCceE-Eec--------CCCcccccchhHHHHHHHHHHHHHh
Q 022188 158 EDFLGH-------ECPKPLKEILQLC---DNRCV-LFD--------NKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 158 ~~~~~~-------~~~~~l~~~~~~~---~~~~~-~~~--------~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+.+.. +|...+..++..+ |.... .|. ...+.||..|.|+.+|+-+|..+..
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 222211 1111233333222 21111 122 2346788899999999998877654
No 313
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.93 E-value=2.6e-09 Score=83.18 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
...+++++|.+|+|||||+|+|++......+.. .+.|...... . .+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence 458899999999999999999999776443322 2333333322 2 2356899999996
No 314
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.93 E-value=3.5e-09 Score=81.08 Aligned_cols=58 Identities=29% Similarity=0.426 Sum_probs=40.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..+++++|.+|+|||||+|+|++....... ...+.|.+.... . .+ ..+.+|||||+..
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~--~-~~-~~~~i~DtpG~~~ 140 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTI--F-LT-PTITLCDCPGLVF 140 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEE--E-eC-CCEEEEECCCcCC
Confidence 348999999999999999999998764322 223344443322 2 22 3689999999853
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.91 E-value=2.4e-09 Score=86.37 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~------~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
..+++++|.+|+|||||+|+|++...... ..+. ++.|........ +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 36899999999999999999998654321 2222 234444333221 225799999996
No 316
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=1.4e-08 Score=80.16 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
..|.++|+.++|||+|+-.|.-.....+.. +.......+. .+...+++||.||... +...+...+..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r-~gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYR-LGSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEe-ecCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 679999999999999997776433211111 1111111112 3445579999999554 34455555443
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCc----cccCeEEEEEeCCCCCCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK----NVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~ilv~nk~D~~~~ 152 (301)
. ..+-++++|+|.. -+...-+..-++|...+.. .-.-|+++.-||-|+..+
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2 4678999999987 4444444333333332211 112289999999998765
No 317
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.2e-08 Score=82.88 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC---ccccC--CCCCcceeeEeEEEEee--------CCeeEEEEeCCCCCCCCCCc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA---FKASA--GSSGVTKTCEMKTTVLK--------DGQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~---~~~~~--~~~~~t~~~~~~~~~~~--------~~~~~~liDtPG~~~~~~~~ 86 (301)
.+++|+|+..+|||||.++|....- |+..+ ...+.|.+......... ..-.+++||+||...
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 8899999999999999999864321 11111 11233333222222211 123569999999544
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc--cccHHHHhccc
Q 022188 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGHE 164 (301)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~ 164 (301)
+++.+.....-+|..++|+|+..+......+.+-.- +.+-. +.++|+||+|...++ ...++..-..
T Consensus 83 ------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-~~~c~----klvvvinkid~lpE~qr~ski~k~~kk- 150 (522)
T KOG0461|consen 83 ------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-ELLCK----KLVVVINKIDVLPENQRASKIEKSAKK- 150 (522)
T ss_pred ------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-hhhcc----ceEEEEeccccccchhhhhHHHHHHHH-
Confidence 333333345566999999999866555554444332 22222 688999999987541 1223332222
Q ss_pred CCchHHHHHHHcC----CceEEecCCCcccccch----hHHHHHHHHHHHHH
Q 022188 165 CPKPLKEILQLCD----NRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVI 208 (301)
Q Consensus 165 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~L~~~l~~~~ 208 (301)
++.-++..+ .++++ .++.+| ..+.+|.+.+...+
T Consensus 151 ----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 151 ----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred ----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhh
Confidence 444444333 23444 455555 78888888887654
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.89 E-value=9.7e-09 Score=88.13 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (301)
...+++|+|.+|+|||||+|+|+|.....++. ..+.|...+.. .-+..+.++||||+..+...+..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~----~~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWI----KLGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEE----EeCCcEEEEECCCcCCCCCCcHH
Confidence 45789999999999999999999988754443 23445554322 22356899999999876654443
No 319
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-08 Score=82.22 Aligned_cols=89 Identities=20% Similarity=0.321 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.-||+++|.|.+|||||+..|+.-. +.......|+-........+++-.+.++|.||+........--+++.+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~---SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQvi---- 134 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH---SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVI---- 134 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch---hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEE----
Confidence 3699999999999999999999643 333334445544455555588999999999998765433222222322
Q ss_pred ccCCCccEEEEEEecC
Q 022188 99 MAKDGIHAFLVVFSVT 114 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~ 114 (301)
...+.+|.+++|+|++
T Consensus 135 avArtaDlilMvLDat 150 (364)
T KOG1486|consen 135 AVARTADLILMVLDAT 150 (364)
T ss_pred EEeecccEEEEEecCC
Confidence 2346679999999998
No 320
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.88 E-value=4.3e-07 Score=81.15 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=72.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCC-----------CcceeeEeEEEEe-e-------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS-----------GVTKTCEMKTTVL-K------------- 66 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~-----------~~t~~~~~~~~~~-~------------- 66 (301)
+...|+++|++|+||||++..|. |..+.-....+. ........+.... .
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999986 443321111110 0000011111000 0
Q ss_pred --CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 67 --DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 67 --~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
.+..+.||||||... .+.....++..... ...|+.+++|+|+..+. ......+.+.+..+ +.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~--~~~p~e~lLVlda~~Gq--~a~~~a~~F~~~~~-----~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAE--AIQPDNIIFVMDGSIGQ--AAEAQAKAFKDSVD-----VGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhh--hcCCcEEEEEeccccCh--hHHHHHHHHHhccC-----CcEEEE
Confidence 256889999999765 34455566665543 33678999999987332 22334455544322 577999
Q ss_pred eCCCCCCC
Q 022188 145 TGGDDLED 152 (301)
Q Consensus 145 nk~D~~~~ 152 (301)
||+|....
T Consensus 247 TKlD~~ar 254 (429)
T TIGR01425 247 TKLDGHAK 254 (429)
T ss_pred ECccCCCC
Confidence 99997644
No 321
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=1.8e-08 Score=82.82 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=80.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC---cHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGK 91 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~ 91 (301)
.....+++++|.+|+|||||+|.++...... ++.+..+.|...+.+ .-+..++++|.||+....-. ..+...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCCccCcchHhH
Confidence 4456899999999999999999998766532 222233444443332 34678999999995432211 111111
Q ss_pred HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
....++. .....=.+++.+|++.++...+...+.++-+. .+ |+.+|+||+|....
T Consensus 209 ~t~~Y~l-eR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLL-ERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHH-hhhhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence 1111221 12233445666788778888888888887764 44 99999999997643
No 322
>PRK12288 GTPase RsgA; Reviewed
Probab=98.86 E-value=9e-09 Score=90.10 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cc-ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~-t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (301)
..++|+|++|+|||||+|+|++.....++..+. -. |+....+.+. .+ ..|+||||+..+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l~ 273 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGLW 273 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccCC
Confidence 358999999999999999999987765553322 12 3343333321 22 369999999886543
No 323
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.85 E-value=4.1e-08 Score=73.19 Aligned_cols=123 Identities=18% Similarity=0.117 Sum_probs=73.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-CCCCccccCCCCCcceeeEe-EEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTCEM-KTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~-g~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
....+|+++|.-++|||+++..|+ |..+..+. ...|...-+ ..+.+.. ...+.+.||.|+.+.. . +
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----e 76 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----E 76 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCch---h----h
Confidence 355789999999999999998765 43332211 222333222 2222222 3478999999988741 1 2
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+-+ .+..-+|++++|.+..++-+-.-...++.-.+........|++++.|+.|..+.
T Consensus 77 Lpr---hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 77 LPR---HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hhH---hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 222 234456999999988743333333333332233333334499999999998755
No 324
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.85 E-value=1e-07 Score=76.91 Aligned_cols=73 Identities=25% Similarity=0.196 Sum_probs=45.2
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.+|||||.... +.....++..++... .++-+++|++++.. ..+...+....+.++ +--+++||.
T Consensus 83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence 356899999997763 344455565555433 67889999999832 333334444444443 345779999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 97644
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3.1e-08 Score=90.10 Aligned_cols=117 Identities=23% Similarity=0.320 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------CCcceeeEeEEEEee----CCeeEEEEeCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------SGVTKTCEMKTTVLK----DGQVVNVIDTPG 78 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~~~liDtPG 78 (301)
..++|+++|+-++|||+|+..|.+.......... .+.+.+......... ...-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3578999999999999999999877653221100 122222222222211 234679999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
.-++. .+....+..+ |++++|+|+..+..-...+.++...+. .. |+++++||+|.+
T Consensus 207 HVnF~-------DE~ta~l~~s----DgvVlvvDv~EGVmlntEr~ikhaiq~---~~--~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFS-------DETTASLRLS----DGVVLVVDVAEGVMLNTERIIKHAIQN---RL--PIVVVINKVDRL 262 (971)
T ss_pred cccch-------HHHHHHhhhc----ceEEEEEEcccCceeeHHHHHHHHHhc---cC--cEEEEEehhHHH
Confidence 87753 2555555555 999999999978777776666654432 33 899999999965
No 326
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=2.3e-08 Score=85.42 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (301)
...+++|+|.+|+|||||+|+|++.....++. ..+.|...+... . +..+.++||||+..+...+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~---~-~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIK---L-SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEE---e-CCCEEEEECCCcccCCCCc
Confidence 35789999999999999999999987644443 234444443222 2 3468999999997654433
No 327
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.80 E-value=3.4e-07 Score=75.40 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=55.6
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
|..+.||.|.|.+.. ++ .... -+|.+++|+.+. +.+...-. -+.+. .=++|+|
T Consensus 121 G~D~IiiETVGvGQs---------E~-~I~~----~aD~~v~v~~Pg~GD~iQ~~Ka----GimEi-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS---------EV-DIAD----MADTVVLVLVPGLGDEIQAIKA----GIMEI-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH---------HH-HHHT----TSSEEEEEEESSTCCCCCTB-T----THHHH--------SEEEEE
T ss_pred CCCEEEEeCCCCCcc---------HH-HHHH----hcCeEEEEecCCCccHHHHHhh----hhhhh-------ccEEEEe
Confidence 678899999998872 21 2222 339988888776 33322211 12222 4578999
Q ss_pred CCCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
|.|.... +....+ ++..+.-.. .+++. +++.++.|+++|++.|.+...
T Consensus 176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~------tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLK------TSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEE------EEeCCCCCHHHHHHHHHHHHH
Confidence 9995433 222222 333332221 23333 677788999999999977543
No 328
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=6.6e-08 Score=86.60 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=83.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
...++..++|+||+|+|||||+.+|.....-.+. ....++|+ .....+.+++..+|. | ...+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~m 127 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQM 127 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHH
Confidence 3445678899999999999999999754321111 11222332 223456889999994 2 1245
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
+.....+ |.+|+++|+.-+|.-+...+|..+... |.+ .++-|+||.|+...+ .++....+.
T Consensus 128 iDvaKIa----DLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKr 188 (1077)
T COG5192 128 IDVAKIA----DLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKR 188 (1077)
T ss_pred HhHHHhh----heeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHH
Confidence 5544444 999999999878888888888888775 443 477889999988652 455554443
No 329
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.80 E-value=1.8e-08 Score=84.76 Aligned_cols=62 Identities=31% Similarity=0.325 Sum_probs=41.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~-----~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
+.+.+++|++|+|||||+|+|.+.....++.. .+- .|+....+.+. ....|+|||||..+..
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccCc
Confidence 45789999999999999999998665444321 112 23333333321 2337999999987654
No 330
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.3e-08 Score=73.74 Aligned_cols=162 Identities=17% Similarity=0.113 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|.++|-.|+||||++-.+---++..+. +|....+..+. +++-++.+||.-|-.+ +..++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-----Ptigfnve~v~-yKNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-----PTIGFNVETVP-YKNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-----CCCCcCccccc-cccccceeeEccCccc-----------ccHHH
Confidence 5589999999999999987665422221111 11122222223 4677889999988444 44455
Q ss_pred hccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++...+++|||+|.+ ++++........+|.+---.. ..++++.||.|.... ....+.... +. +..
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~-----L~--l~~ 148 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKM-----LG--LQK 148 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHH-----hC--hHH
Confidence 55678889999999998 455555555555555421111 167888999997765 344443332 11 122
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+...+ ...||-.+.|++..++|+.+.+..
T Consensus 149 Lk~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 149 LKDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HhhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence 23333221 235777889999999999887653
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.79 E-value=1e-08 Score=89.82 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----C-cceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
..++|+|++|+|||||+|+|++.....++..+. - .|+....+.. ..+ ..|+||||+..+.
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCccccc
Confidence 458999999999999999999887655443222 1 2333333221 222 3799999987754
No 332
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2e-08 Score=79.52 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (301)
...+++++|.+|+|||||+|+|++......+ ...+.|....... .+ ..+.+|||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~---~~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIK---IS-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEE---ec-CCEEEEECCCCC
Confidence 3478999999999999999999987653332 2223444443332 22 568999999974
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.78 E-value=1.3e-08 Score=85.19 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (301)
..++++|++|+|||||+|+|++.....++... +. .|+....+.. . ...|+||||+..+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGLW 187 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCCC
Confidence 57899999999999999999998765544221 11 3344444332 2 2389999999886543
No 334
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.77 E-value=4.6e-09 Score=87.28 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHH---HHhhCccccCeEEEEEeC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL---PNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~~ilv~nk 146 (301)
.+.++||||....... ......+.+.+.. ...-++++++|+. .++......-..+ .-++.-+. |.+.++||
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~l--P~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLEL--PHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTS--EEEEEE--
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCC--CEEEeeec
Confidence 6899999995442111 1122233333322 4456789999998 4444332221211 11111122 99999999
Q ss_pred CCCCCCccccHHHHhcc-------------cCCchHHHHHHHcCC--ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 147 GDDLEDHEKTLEDFLGH-------------ECPKPLKEILQLCDN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+|.........-++..+ .....+..++...+. +.++ .++.++.++.+|+..+++..
T Consensus 166 ~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~p------ls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 166 IDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIP------LSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-------BTTTTTTHHHHHHHHHHHH
T ss_pred cCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEE------EECCChHHHHHHHHHHHHHh
Confidence 99886310111111111 011112222222222 2333 56667788999998887754
No 335
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=8.9e-08 Score=72.51 Aligned_cols=116 Identities=10% Similarity=0.053 Sum_probs=73.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+++++|-.|||||||++.|-....-.-.+...+.+ .... ..+-.++.+|.-|.. +..+..
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS-----E~l~-Ig~m~ftt~DLGGH~-----------qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS-----EELS-IGGMTFTTFDLGGHL-----------QARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh-----HHhe-ecCceEEEEccccHH-----------HHHHHH
Confidence 34679999999999999999986544311112222221 1122 577889999999822 344445
Q ss_pred hccCCCccEEEEEEecC--CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+++.+|++++.+|+. .|+.+. +..++.+... ..-.+-|++++.||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence 56677889999999997 344322 3333333222 10123399999999997765
No 336
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=3.8e-08 Score=87.06 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFK---ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~---~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
.+++++|.+|+|||||+|+|++..... ...+. ++.|..... +. . +..+.++||||+.........+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~-~-~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IP-L-DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EE-e-CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 589999999999999999999864311 11222 333433322 22 2 3346899999998742111111111111
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
.+. -........+.++....+..+...++..+.. ... .+.+.+++.+..
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~~--~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EKT--SFTFYVSNELNI 279 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cce--EEEEEccCCcee
Confidence 111 1345677788877764444444444443332 111 345555554443
No 337
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.72 E-value=1.1e-06 Score=76.19 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=67.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc------CCCCC-----------cceeeEeEEEE----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSG-----------VTKTCEMKTTV---------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~------~~~~~-----------~t~~~~~~~~~---------------- 64 (301)
++..|+|+|++|+||||++..|.+......+ ..... ...........
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998764321110 00000 00000111000
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc----CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
...+..+++|||||..... ....+++....... ...++..++|++++.+. ........+.+.++ +.
T Consensus 193 ~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~-----~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVG-----LT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCC-----CC
Confidence 0134578999999976632 23333444433221 24578899999998322 22222233222222 56
Q ss_pred EEEEeCCCCCC
Q 022188 141 IVVFTGGDDLE 151 (301)
Q Consensus 141 ilv~nk~D~~~ 151 (301)
-+|+||.|...
T Consensus 263 giIlTKlD~t~ 273 (318)
T PRK10416 263 GIILTKLDGTA 273 (318)
T ss_pred EEEEECCCCCC
Confidence 79999999653
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.71 E-value=6e-07 Score=75.00 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=58.1
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHH-HHHHHhhCccccCeEEEEEeC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ilv~nk 146 (301)
|..+.+|.|.|.+.+.. .+.. -+|.+++|.-+. . +.+...+ .-+.+. -=++++||
T Consensus 143 G~DvIIVETVGvGQsev-------~I~~-------~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEV-------DIAN-------MADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchh-------HHhh-------hcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence 67889999999888422 2222 238888876544 1 1222222 222232 35689999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEec-CCCcccccchhHHHHHHHHHHHHHhh
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD-NKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.|..... ....++... +...... .+...+. +....++..+.|+++|++.|.+....
T Consensus 199 aD~~~A~-~a~r~l~~a-----l~~~~~~--~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGAE-KAARELRSA-----LDLLREV--WRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhHH-HHHHHHHHH-----HHhhccc--ccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 9944330 111111111 2111100 1111111 22347888899999999999877543
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.71 E-value=6.1e-08 Score=83.59 Aligned_cols=60 Identities=30% Similarity=0.320 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cccee-eEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~-~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
+..++++|++|+|||||+|+|+|.....++.... ..|+. ..... .. ....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~---~~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD---LP-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE---cC-CCcEEEECCCcCcc
Confidence 3679999999999999999999987655543321 12332 22221 22 23489999998864
No 340
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=4.7e-08 Score=85.01 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (301)
..+++|+|.||+||||+||+|+|.....++.. ++.|...+... -+..+.++||||+.-....+
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCCCcCCCCccc
Confidence 37899999999999999999999988444432 24454444332 23458999999988765433
No 341
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.70 E-value=1.5e-07 Score=82.24 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEE----------------------------EEeeCCe
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKT----------------------------TVLKDGQ 69 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~----------------------------~~~~~~~ 69 (301)
++.|++|||||+||||.+-.|........+....+ .|+++-... ......+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 68999999999999999999876554222211111 222221110 0001256
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 149 (301)
.++||||.|.... +.....++..++..+ ...-+.+|++++.. ...-+..+..+... + .--+++||+|.
T Consensus 283 d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~f~~~---~---i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQFSLF---P---IDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHHhccC---C---cceeEEEcccc
Confidence 8999999997663 444555666665544 33445566676611 11223333333322 1 35588999997
Q ss_pred CCC
Q 022188 150 LED 152 (301)
Q Consensus 150 ~~~ 152 (301)
...
T Consensus 351 T~s 353 (407)
T COG1419 351 TTS 353 (407)
T ss_pred cCc
Confidence 644
No 342
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.69 E-value=6.4e-08 Score=83.01 Aligned_cols=60 Identities=32% Similarity=0.388 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
.+++++|++|+|||||+|+|+|.....++.... + .|+...... .. ....++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~---~~-~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP---LP-GGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE---cC-CCCEEEECCCCCccC
Confidence 689999999999999999999987765553221 1 233332222 11 123799999996643
No 343
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=5.6e-07 Score=76.15 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=60.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEee-------------C---CeeEEEEeCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------------D---GQVVNVIDTPGLFD 81 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------------~---~~~~~liDtPG~~~ 81 (301)
..+.|+|||.+++|||||+|+|+..... ....+..|.......+... . .-.++++|..|+-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 3479999999999999999999977652 1222334444333222111 1 13679999999876
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
.....+-++..+..-+. .+|+++.|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR----~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIR----HVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhh----hccceeEEEEec
Confidence 55555555666665554 559999998876
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=5.2e-07 Score=79.06 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=67.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC------c--cccCCCCCc---------ceeeEeEEEEe-------------eC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA------F--KASAGSSGV---------TKTCEMKTTVL-------------KD 67 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~------~--~~~~~~~~~---------t~~~~~~~~~~-------------~~ 67 (301)
....|+|+|++|+||||++..|++... . .......+. ........... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 347899999999999999999864321 0 000000000 00000000000 01
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.||||||.... +.....++...+.. ..++.+++|++++ .-.......++.+.. ++ .--+|+||.
T Consensus 320 ~~DvVLIDTaGRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsAT-tk~~d~~~i~~~F~~-~~-----idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNYR---ASETVEEMIETMGQ--VEPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCc-cChHHHHHHHHHhcC-CC-----CCEEEEEcc
Confidence 347899999997652 33344555555543 3467888888886 112222444444443 22 456899999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 97644
No 345
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=7.4e-07 Score=84.61 Aligned_cols=124 Identities=19% Similarity=0.193 Sum_probs=68.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEe------------------EEE----------EeeCCe
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEM------------------KTT----------VLKDGQ 69 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~~~------------------~~~----------~~~~~~ 69 (301)
+..|+|+|++|+||||++..|.+......+.... -.+.+... ... ....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999998755322110000 00000000 000 001245
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
.++||||||.... +..+.+++..... ...++-.++|++++. ...+ ...++.+....+.+ ..-+|+||.|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~---i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGED---VDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence 7899999997663 2334444443322 235677889999872 2222 23344444322212 4568899999
Q ss_pred CCCC
Q 022188 149 DLED 152 (301)
Q Consensus 149 ~~~~ 152 (301)
....
T Consensus 335 Et~~ 338 (767)
T PRK14723 335 EATH 338 (767)
T ss_pred CCCC
Confidence 7644
No 346
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.66 E-value=3.1e-07 Score=81.97 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=66.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEe------------------EE----------EEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEM------------------KT----------TVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~------------------~~----------~~~~~ 67 (301)
+.+.+|+|+|+||+||||++..|.+...+..+....+ .+..... .. .....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 3567999999999999999998876432111100000 0000000 00 00012
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
+..+.+|||+|.... +....+++... .. ...++-.++|++++. ...+ ...+..+.. + + ..-+|+||
T Consensus 269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-~--~---~~~~I~TK 335 (420)
T PRK14721 269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATS--SGDTLDEVISAYQG-H--G---IHGCIITK 335 (420)
T ss_pred CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCC--CHHHHHHHHHHhcC-C--C---CCEEEEEe
Confidence 457899999997763 23333444432 21 234566788888872 2222 223333322 1 2 45689999
Q ss_pred CCCCCC
Q 022188 147 GDDLED 152 (301)
Q Consensus 147 ~D~~~~ 152 (301)
.|....
T Consensus 336 lDEt~~ 341 (420)
T PRK14721 336 VDEAAS 341 (420)
T ss_pred eeCCCC
Confidence 997644
No 347
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.5e-07 Score=77.32 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=106.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..+..+|+-+|+...|||||-.+|+....-..+ ....+.|....-..+. -..+...=+|+||.-|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence 345579999999999999999998743210000 1122555554444333 3456777899999665
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
.+.+.+. -...-|+.|+|+.++++..++.++-+-..++. |.+ ++++.+||.|..++ +++-+.+
T Consensus 130 ----------YIKNMIt-GaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~d--~e~leLV 192 (449)
T KOG0460|consen 130 ----------YIKNMIT-GAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVDD--PEMLELV 192 (449)
T ss_pred ----------HHHHhhc-CccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccCC--HHHHHHH
Confidence 1222222 23455999999999988888888877666664 554 89999999999866 4554544
Q ss_pred cccCCchHHHHHHHcCCc--eEEecCCCcccccc-------hhHHHHHHHHHHHHHhh
Q 022188 162 GHECPKPLKEILQLCDNR--CVLFDNKTKDEAKG-------TEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~L~~~l~~~~~~ 210 (301)
+- .+++++..+|.. -.|+-......|.. ...+..|++.++..++.
T Consensus 193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 43 167777766532 11111111111111 24577888888876653
No 348
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.3e-07 Score=87.44 Aligned_cols=118 Identities=21% Similarity=0.375 Sum_probs=81.9
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
.+....++|.++.|...|||||..+|...+-..+ .....+.|-+....+.. ..+..+++||+||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCCc
Confidence 3445678999999999999999999875432111 11122555555444432 57789999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHH--HHHHhhCccccCeEEEEEeCCCCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH--RLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~--~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
-|+.. ++..+...+ |++++++|+..+........++ ++... ..++|+||+|.+
T Consensus 83 vdf~s-------evssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~~~~-------~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDFSS-------EVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWIEGL-------KPILVINKIDRL 137 (887)
T ss_pred cchhh-------hhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHHccC-------ceEEEEehhhhH
Confidence 98643 444444444 9999999998888887776666 33222 688999999954
No 349
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.61 E-value=2e-07 Score=81.51 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC----------------CeeEEEEeCCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS 83 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~ 83 (301)
..++|+|.||+|||||+|+|++....+... .+..|...........+ ...+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-PPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-CCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 579999999999999999999876512211 12222322222222112 2367899999987643
Q ss_pred CCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
......+..+...+..+ |++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~~----d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREV----DIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhC----CEEEEEEeCC
Confidence 22223444555555544 9999999985
No 350
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=1.9e-06 Score=75.78 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=67.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccceee------------------EeEEE----------EeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTC------------------EMKTT----------VLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~------------------~~~~~----------~~~~~ 68 (301)
.+..++|+|++|+||||++..|.+......+.... -.+... ..... ..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 35789999999999999999997643211110000 000000 00000 11235
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccc---cCeEEEEEe
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT 145 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~n 145 (301)
..+.+|||||.... +..+.+++.. +.. ...+.-.++|++++.+.... ...+..+....+.+. ....-+|+|
T Consensus 216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEe
Confidence 68899999997752 2333333332 222 23445668888887333222 233444444322110 013458899
Q ss_pred CCCCCCC
Q 022188 146 GGDDLED 152 (301)
Q Consensus 146 k~D~~~~ 152 (301)
|.|....
T Consensus 290 KlDEt~~ 296 (374)
T PRK14722 290 KLDEASN 296 (374)
T ss_pred ccccCCC
Confidence 9997644
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.61 E-value=1.5e-07 Score=73.27 Aligned_cols=57 Identities=32% Similarity=0.427 Sum_probs=39.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
...+++++|.+|+||||++|.+.+......+.. .+.|...+.. ..+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV----KITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE----EcCCCEEEEECcCC
Confidence 347899999999999999999998765433322 2334333221 12346899999995
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.59 E-value=3.7e-06 Score=71.42 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc----CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (301)
.+..+.+|||||.... +.....++....... ...+|..++|++++. ..........+.+.++ ..-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence 3467899999997763 334444444443221 245799999999972 2333333333333332 4678
Q ss_pred EEeCCCCCCC
Q 022188 143 VFTGGDDLED 152 (301)
Q Consensus 143 v~nk~D~~~~ 152 (301)
|+||+|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999997644
No 353
>PRK14974 cell division protein FtsY; Provisional
Probab=98.59 E-value=2.2e-06 Score=74.60 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=43.8
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.||||||.... +.....++...... ..+|.+++|+++..+ .......+.+.+..+ .--+++||+
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456899999997763 23344455444332 357888999998732 222223333333222 466899999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 97644
No 354
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.57 E-value=5.7e-07 Score=67.36 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 5 ~~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
.+..+-....+..-..+|+++|.+..|||||+-...|...-..-....+..--.....+. .....+.+||.-|-
T Consensus 6 tv~~~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~----- 79 (205)
T KOG1673|consen 6 TVANNSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQ----- 79 (205)
T ss_pred ccccCCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCc-----
Confidence 344444444444456899999999999999998888766421111111111111111111 12335689999882
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~ 164 (301)
+++...+..+..++-++++++|.+.+.+-.. ...+.++..|-+...--++|.||-|..-.-..++.+.+..
T Consensus 80 ------~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~- 150 (205)
T KOG1673|consen 80 ------REFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR- 150 (205)
T ss_pred ------HhhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-
Confidence 3566777777888899999999995544444 2233333333221112347889988653311223222221
Q ss_pred CCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.-+.+........+. +|+....+++.++..+...+
T Consensus 151 ---qar~YAk~mnAsL~F------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 151 ---QARKYAKVMNASLFF------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred ---HHHHHHHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence 134444445566655 56656688999998876544
No 355
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=87.28 Aligned_cols=132 Identities=16% Similarity=0.069 Sum_probs=72.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
++-+|+|+|++|+|||||++.|+|.....+|....+.+....++...... ...-+++|.-.-..+... ..++..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----e~~~r~~ 422 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD----EQEVRAY 422 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc----HHHHHHH
Confidence 45799999999999999999999887766554444555555444322100 011122221100000000 1233333
Q ss_pred Hhcc-CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE---EeCCCCCCCccccHHHHhc
Q 022188 97 LGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLG 162 (301)
Q Consensus 97 ~~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv---~nk~D~~~~~~~~~~~~~~ 162 (301)
+... +++.++.- .+ ..++++++..+...+-++..+ +++|+ +||.|...- ..+++.+.
T Consensus 423 L~~f~F~~~~~~~---~v-~~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~ 483 (530)
T COG0488 423 LGRFGFTGEDQEK---PV-GVLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALL 483 (530)
T ss_pred HHHcCCChHHHhC---ch-hhcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHH
Confidence 3322 23333311 12 367889988887777766654 67777 898886533 34444444
No 356
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.54 E-value=6.1e-07 Score=73.35 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|+|+|+.|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999754
No 357
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.54 E-value=2.5e-06 Score=78.65 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
++-+|+|||+||+|||||++.|+|.....+|.
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~ 59 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence 45799999999999999999999998755553
No 358
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.52 E-value=1.7e-06 Score=70.06 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=45.5
Q ss_pred cEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEec
Q 022188 105 HAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (301)
Q Consensus 105 ~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 184 (301)
|.++.|+|+.+..+ .... ... .+...-++++||+|..+.....++..... ++.+ ..+.+++.
T Consensus 114 ~~~i~vvD~~~~~~-~~~~----~~~----qi~~ad~~~~~k~d~~~~~~~~~~~~~~~-----~~~~--~~~~~i~~-- 175 (199)
T TIGR00101 114 DLTIFVIDVAAGDK-IPRK----GGP----GITRSDLLVINKIDLAPMVGADLGVMERD-----AKKM--RGEKPFIF-- 175 (199)
T ss_pred CcEEEEEEcchhhh-hhhh----hHh----HhhhccEEEEEhhhccccccccHHHHHHH-----HHHh--CCCCCEEE--
Confidence 77899999872222 1111 011 11113479999999874211223332222 2222 12344554
Q ss_pred CCCcccccchhHHHHHHHHHHHH
Q 022188 185 NKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.|++++.|++++++++.+.
T Consensus 176 ----~Sa~~g~gi~el~~~i~~~ 194 (199)
T TIGR00101 176 ----TNLKTKEGLDTVIDWIEHY 194 (199)
T ss_pred ----EECCCCCCHHHHHHHHHhh
Confidence 7889999999999998754
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.51 E-value=1.2e-07 Score=80.14 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+-++|+||+|+.......++.++.. ++.+.+ ..++++ .|++++.++++|+++|..
T Consensus 232 ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 232 ASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred CcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence 6789999999875311234444433 333321 344555 788889999999999865
No 360
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.50 E-value=1.8e-07 Score=83.09 Aligned_cols=60 Identities=33% Similarity=0.366 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (301)
..+|++||.+|+||||+||+|.|.+.. +..++++.|.+.+... -...+.|.|+||+--++
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~----ls~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIF----LSPSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEE----cCCCceecCCCCccccC
Confidence 489999999999999999999999872 2234567787776543 24567899999976543
No 361
>PRK13796 GTPase YqeH; Provisional
Probab=98.49 E-value=2.5e-07 Score=81.96 Aligned_cols=59 Identities=25% Similarity=0.238 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~---~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
..++.++|.+|+|||||+|+|++...-. ...+. ++.|...... . . +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~--~-l-~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI--P-L-DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE--E-c-CCCcEEEECCCccc
Confidence 3579999999999999999998643111 11222 2334333222 2 1 22358999999965
No 362
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.47 E-value=1.1e-06 Score=68.54 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.++|+|..|+|||||++.+++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 47899999999999999988653
No 363
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=8.8e-06 Score=72.24 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=66.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc-------cc---CCCC-----------CcceeeEeEEE----------Eee
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-------AS---AGSS-----------GVTKTCEMKTT----------VLK 66 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~-------~~---~~~~-----------~~t~~~~~~~~----------~~~ 66 (301)
.+..|+++|++|+||||++..|....... .. ..+. ........... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35689999999999999998886432110 00 0000 00000000000 001
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
.+..+.+|||||.... +.....++..++.... ..+-.++|++++.. ..+. .+.+...-.-+ +--+++||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~~--~~~~~~~~~~~---~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSDV--KEIFHQFSPFS---YKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHHH--HHHHHHhcCCC---CCEEEEEe
Confidence 3568899999997753 2222345555554332 23457888998833 2221 13333331111 46689999
Q ss_pred CCCCCC
Q 022188 147 GDDLED 152 (301)
Q Consensus 147 ~D~~~~ 152 (301)
.|....
T Consensus 322 lDet~~ 327 (388)
T PRK12723 322 LDETTC 327 (388)
T ss_pred ccCCCc
Confidence 997644
No 364
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=5.2e-06 Score=72.66 Aligned_cols=123 Identities=20% Similarity=0.145 Sum_probs=64.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------Cc--cccCCCCCc---------ceeeEeEEEEe-------------eC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK------AF--KASAGSSGV---------TKTCEMKTTVL-------------KD 67 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~------~~--~~~~~~~~~---------t~~~~~~~~~~-------------~~ 67 (301)
+...|+|+|++|+||||++..|.... +. .......+. ........... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999999886421 10 000000000 00000000000 02
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..++||||||.... +.....++...... ..++.+++|++++ ....+ ....+.. |.. ...--+|+||.
T Consensus 285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYL---AEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCcc---CHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 357899999997652 33444455444432 2557777777764 22323 2233322 221 11456889999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 353 DET~~ 357 (407)
T PRK12726 353 DETTR 357 (407)
T ss_pred cCCCC
Confidence 97644
No 365
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.46 E-value=2.4e-05 Score=70.66 Aligned_cols=72 Identities=22% Similarity=0.164 Sum_probs=42.5
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..+.||||||.... +....+++..... ...+|.+++|+|++.+ . ..+..++. |.... ...-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence 47899999997653 3444455554433 2356889999998732 2 22233322 22211 13568899999
Q ss_pred CCCC
Q 022188 149 DLED 152 (301)
Q Consensus 149 ~~~~ 152 (301)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 6543
No 366
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=7.6e-06 Score=74.59 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+..|+|+|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988875
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.44 E-value=6.8e-06 Score=74.67 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..|+|+|+||+||||++..|.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34689999999999999999998654
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.44 E-value=2e-06 Score=77.56 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceee------------------EeEEE----------EeeCCe
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTC------------------EMKTT----------VLKDGQ 69 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~------------------~~~~~----------~~~~~~ 69 (301)
+..|+|+|++|+||||++..|..... ...+....-.+.+. ..... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999988764322 11110000000000 00000 001246
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
.+.||||||.... +.....++..++.. ...+.-.++|++++ ....+ ...+..+... . +.-+|+||+|
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~--~~~~~l~~~~~~f~~~---~---~~~vI~TKlD 368 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSAT--TKYEDLKDIYKHFSRL---P---LDGLIFTKLD 368 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECC--CCHHHHHHHHHHhCCC---C---CCEEEEeccc
Confidence 7899999998653 23333455555542 22345667778876 22222 3333333321 1 3458899999
Q ss_pred CCCC
Q 022188 149 DLED 152 (301)
Q Consensus 149 ~~~~ 152 (301)
....
T Consensus 369 et~~ 372 (424)
T PRK05703 369 ETSS 372 (424)
T ss_pred cccc
Confidence 7533
No 369
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.44 E-value=3.4e-07 Score=74.63 Aligned_cols=91 Identities=16% Similarity=0.279 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
-+++++|.|.+||||++.-|+|... .......|+-..+.....+.+..+.+.|.||+.+......-.++++. .
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvi----a 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI----A 132 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEE----E
Confidence 4899999999999999999998653 33334445555555555578889999999999875433222222222 2
Q ss_pred cCCCccEEEEEEecCCCC
Q 022188 100 AKDGIHAFLVVFSVTNRF 117 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~ 117 (301)
..+.++.+++|+|+-.++
T Consensus 133 vartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVLKPL 150 (358)
T ss_pred EeecccEEEEEeeccCcc
Confidence 245568888888876433
No 370
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=1.9e-06 Score=76.49 Aligned_cols=124 Identities=17% Similarity=0.205 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCc--------------ceeeEeEEE---------EeeCCeeE
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGV--------------TKTCEMKTT---------VLKDGQVV 71 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~~~~--------------t~~~~~~~~---------~~~~~~~~ 71 (301)
...|+|+|++|+||||++..|........+ ...... ......... ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 467999999999999999988743211000 000000 000000000 00135578
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccC-CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
.||||||+.... .....++...+.... ..++-.++|++++... .......+.+ +.++ +--+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f-~~~~-----~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAY-ESLN-----YRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHh-cCCC-----CCEEEEEcccCC
Confidence 999999987532 233344544443322 2355678899987221 1222333333 2222 466899999976
Q ss_pred CC
Q 022188 151 ED 152 (301)
Q Consensus 151 ~~ 152 (301)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 44
No 371
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.37 E-value=1.3e-06 Score=70.14 Aligned_cols=120 Identities=19% Similarity=0.279 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+++|.+|+||||+=-.+..... .-.....+.|.+..-.+....++-.+.+||.-|-.. .+..++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~----------fmen~~~ 72 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE----------FMENYLS 72 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-hhhhhccCCcceeeehhhhhhhhheeehhccCCcHH----------HHHHHHh
Confidence 47899999999999997665553221 111223355555544444434456789999998222 2333333
Q ss_pred ----ccCCCccEEEEEEecCCCCCHHH----HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 99 ----MAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 99 ----~~~~~~~~il~v~~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+..++++++|+|+..+--..+ ...|+.+.+..+. . .++.+++|+|+...
T Consensus 73 ~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-A--kiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 73 SQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-A--KIFCLLHKMDLVQE 131 (295)
T ss_pred hcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-c--eEEEEEeechhccc
Confidence 23577899999999984422333 2334444444332 2 68889999998755
No 372
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.30 E-value=8e-06 Score=69.00 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=68.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc---cccCCCC--------------CcceeeEeEEEE-------------eeC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAF---KASAGSS--------------GVTKTCEMKTTV-------------LKD 67 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~---~~~~~~~--------------~~t~~~~~~~~~-------------~~~ 67 (301)
+..+|+++|++|+||||++..|++.... ..+.... ............ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999999988754210 0100000 000000000000 012
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.+|||||-... +....+++...+... .++-+++|++++ .-.......++.+.. ++ +--+++||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~-~~~~d~~~~~~~f~~-~~-----~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD-IH-----IDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCc-cCHHHHHHHHHHhCC-CC-----CCEEEEEee
Confidence 457899999997652 233445555554422 557789999987 111222344444443 12 466899999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 97644
No 373
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.29 E-value=2e-05 Score=62.57 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence 34578999999999999999999997764333
No 374
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.29 E-value=2.6e-06 Score=71.53 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=48.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (301)
...++.|+|-||+|||||+|++-....-..+ ....+.|...... +.......++++||||...++..+.+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence 4589999999999999999997543321111 1233556555442 23346678999999999988776644
No 375
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.27 E-value=4.7e-06 Score=69.34 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+..+.++.-+. +..++|+||||||||||+++|.|...+..|
T Consensus 17 il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 17 ILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 34444444333 478999999999999999999997665444
No 376
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=2.6e-06 Score=66.12 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=93.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--eeCC-eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDG-QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
....++++|..|.||||++++.+-...-... ..|+........ ...+ ..+.+|||.|.....+-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y----~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl--------- 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY----PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL--------- 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecc----cCcceeEEeeeeeecccCcEEEEeeecccceeeccc---------
Confidence 3588999999999999999998754431222 223333333222 1223 57899999995442210
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
--.++-+..+.++++|+..+++-.. .++.+-+...+++ + |+++..||.|.... . ++. . --.+.
T Consensus 76 --rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-i--Piv~cGNKvDi~~r--~-----~k~-k---~v~~~ 139 (216)
T KOG0096|consen 76 --RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-I--PIVLCGNKVDIKAR--K-----VKA-K---PVSFH 139 (216)
T ss_pred --ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-C--Ceeeeccceecccc--c-----ccc-c---cceee
Confidence 0112334467788889887777766 4566666666665 3 99999999996533 1 000 0 00011
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+-...++. .|++...++..-+-++.+.+..
T Consensus 140 rkknl~y~~------iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 140 RKKNLQYYE------ISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ecccceeEE------eecccccccccchHHHhhhhcC
Confidence 111222333 5666777788888888776644
No 377
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.3e-05 Score=66.35 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+||||+|||||+++|+|...+..|
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 467999999999999999999996654444
No 378
>PRK10867 signal recognition particle protein; Provisional
Probab=98.27 E-value=5.4e-05 Score=68.23 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=41.7
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.||||||.... +.....++...... ..|+.+++|+|+.. ........+.+.+.++ ..-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~~-----i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEALG-----LTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 457899999997652 33344444443332 25678899999751 1222333344433222 356788999
Q ss_pred CCCC
Q 022188 148 DDLE 151 (301)
Q Consensus 148 D~~~ 151 (301)
|...
T Consensus 251 D~~~ 254 (433)
T PRK10867 251 DGDA 254 (433)
T ss_pred cCcc
Confidence 9653
No 379
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.27 E-value=2.1e-05 Score=62.69 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998664433
No 380
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.24 E-value=3.7e-05 Score=64.99 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK 46 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~ 46 (301)
.+.+|+|+|.+|+|||||+..|-|.....
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~K 79 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVK 79 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccC
Confidence 46789999999999999999999877533
No 381
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=2e-05 Score=62.50 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998654333
No 382
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=4.4e-06 Score=71.66 Aligned_cols=141 Identities=21% Similarity=0.216 Sum_probs=87.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccce--eeEeEEEE-------e-----------
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVTK--TCEMKTTV-------L----------- 65 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-------------~~t~--~~~~~~~~-------~----------- 65 (301)
..|++++|...+|||||+-.|+.... +.+.... +-|. ......+. +
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 47999999999999999988874331 1111000 0010 00110000 0
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
....-+++||..|.... .+.-+..+. .-.||..++|+.++.+++...++-+-.+..+ ++ |+++++|
T Consensus 246 ~SSKlvTfiDLAGh~kY-------~~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvt 311 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKY-------QKTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVT 311 (591)
T ss_pred hhcceEEEeecccchhh-------heeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEE
Confidence 01246788898884431 111112222 2357889999999878888777777776654 44 9999999
Q ss_pred CCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (301)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (301)
|+|+... ..++..+++ +.+++.+.|-+-.
T Consensus 312 K~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~kv 340 (591)
T KOG1143|consen 312 KMDLVDR--QGLKKTVKD-----LSNLLAKAGCTKV 340 (591)
T ss_pred eeccccc--hhHHHHHHH-----HHHHHhhcCcccc
Confidence 9999887 777777776 7777776664433
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00015 Score=63.98 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=48.2
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.+|||.|-.. .++.+..++...-. .-.||-+++|+|+..+- .....-+.+.+.++. .=+|+||+
T Consensus 182 ~~DvvIvDTAGRl~---ide~Lm~El~~Ik~--~~~P~E~llVvDam~GQ--dA~~~A~aF~e~l~i-----tGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLH---IDEELMDELKEIKE--VINPDETLLVVDAMIGQ--DAVNTAKAFNEALGI-----TGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCccc---ccHHHHHHHHHHHh--hcCCCeEEEEEecccch--HHHHHHHHHhhhcCC-----ceEEEEcc
Confidence 45789999999665 35566666655433 34789999999987222 223344555555543 45889999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 250 DGdaR 254 (451)
T COG0541 250 DGDAR 254 (451)
T ss_pred cCCCc
Confidence 97643
No 384
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.17 E-value=1.5e-05 Score=69.42 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=46.6
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+||++|-.. +...| ..++.+++++++|++.++. ....-...+..+...+..+
T Consensus 158 ~~~~~~~~~DvgGq~~----------~R~kW-~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 158 IKNLKFRMFDVGGQRS----------ERKKW-IHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ecceEEEEECCCCCcc----------cchhH-HHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 4567889999999543 11222 2346788999999999831 0122233444445444332
Q ss_pred ccCeEEEEEeCCCCCC
Q 022188 136 VFDYMIVVFTGGDDLE 151 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~~ 151 (301)
...|+++++||.|...
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 2349999999999653
No 385
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=3.1e-05 Score=69.70 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=42.3
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.|+||||.... +.....++..... ...++.+++|+|+.. ........+.+.+..+ ..-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 456899999997652 3334444444333 235788899999862 1222333344433332 356789999
Q ss_pred CCCC
Q 022188 148 DDLE 151 (301)
Q Consensus 148 D~~~ 151 (301)
|...
T Consensus 250 D~~~ 253 (428)
T TIGR00959 250 DGDA 253 (428)
T ss_pred cCcc
Confidence 9653
No 386
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.14 E-value=4e-05 Score=58.79 Aligned_cols=29 Identities=31% Similarity=0.355 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK 46 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~ 46 (301)
++-.++|+|++|+|||||++.|.|...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34689999999999999999999976533
No 387
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.13 E-value=1.8e-05 Score=62.08 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~ 47 (301)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDS 54 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 456899999999999999999999875433
No 388
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.13 E-value=2.3e-05 Score=68.82 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC--------CCHHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR--------FSQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+||..|-.. +...| ..++.++++++||++.++- ........+..+...+..+
T Consensus 181 ~~~~~~~~~DvgGqr~----------~R~kW-~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 181 VKKLFFRMFDVGGQRS----------ERKKW-IHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred ECCeEEEEEecCCchh----------hhhhH-HHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 4567788999999433 11222 3356788999999999831 0122233444555554433
Q ss_pred ccCeEEEEEeCCCCCC
Q 022188 136 VFDYMIVVFTGGDDLE 151 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~~ 151 (301)
...|++|++||.|...
T Consensus 250 ~~~piil~~NK~D~~~ 265 (342)
T smart00275 250 ANTSIILFLNKIDLFE 265 (342)
T ss_pred cCCcEEEEEecHHhHH
Confidence 2349999999999653
No 389
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.13 E-value=2.2e-05 Score=61.74 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4568999999999999999999998764444
No 390
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.11 E-value=5.5e-05 Score=65.38 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC---------------CcceeeEeEEEEe-----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---------------GVTKTCEMKTTVL----------------- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~---------------~~t~~~~~~~~~~----------------- 65 (301)
....+++.|+..+|||||+-+|+--..- .+.... +.......+.+..
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 3478999999999999999887532211 111000 1111222222210
Q ss_pred ---eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188 66 ---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (301)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (301)
..+..+.++||.|... .+...+... .-..+|-.++++-++++.+...++-+-.+..+ +. |+++
T Consensus 195 vv~~aDklVsfVDtvGHEp------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--PviV 260 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEP------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVIV 260 (527)
T ss_pred hhhhcccEEEEEecCCccH------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEEE
Confidence 0135678999999443 112222222 23578999999999988888887766655443 33 9999
Q ss_pred EEeCCCCCCCccccHHHHhcc
Q 022188 143 VFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 143 v~nk~D~~~~~~~~~~~~~~~ 163 (301)
++||+|...+ +.+......
T Consensus 261 vvTK~D~~~d--dr~~~v~~e 279 (527)
T COG5258 261 VVTKIDMVPD--DRFQGVVEE 279 (527)
T ss_pred EEEecccCcH--HHHHHHHHH
Confidence 9999998876 555554443
No 391
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.10 E-value=2e-05 Score=63.04 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998764444
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.08 E-value=2.8e-06 Score=76.27 Aligned_cols=127 Identities=18% Similarity=0.102 Sum_probs=67.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeC-------CCCCCCCCCcHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDT-------PGLFDLSAGSEFVGK 91 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt-------PG~~~~~~~~~~~~~ 91 (301)
.-+|++|||+|+|||||++.++|...+..|............+.. ....-.-.|- |-+.+ ..-.+
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q---h~~e~ldl~~s~le~~~~~~~~-----~~~~e 487 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ---HLAEQLDLDKSSLEFMMPKFPD-----EKELE 487 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh---hhHhhcCcchhHHHHHHHhccc-----cchHH
Confidence 368999999999999999999999887766554433222221111 0000011111 11111 01112
Q ss_pred HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE----EeCCCCCCCccccHHHHhc
Q 022188 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLG 162 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv----~nk~D~~~~~~~~~~~~~~ 162 (301)
++...+..+ +.++-.-++... .++.+++.++-+....... |.+++ +|+.|...- ..+.+++.
T Consensus 488 ~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiN 553 (614)
T KOG0927|consen 488 EMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAIN 553 (614)
T ss_pred HHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHh
Confidence 333334332 344444555555 7778887766655555444 55555 788885433 33444443
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.08 E-value=5.8e-05 Score=60.98 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999976
No 394
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.08 E-value=0.00011 Score=70.20 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-+++|+|++|+|||||++.|+|...+.+|
T Consensus 344 ~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 374 (635)
T PRK11147 344 RGDKIALIGPNGCGKTTLLKLMLGQLQADSG 374 (635)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654444
No 395
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.07 E-value=6.5e-06 Score=64.77 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 139 ~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.=++|+||.|++.--+..++.+... .+.+-+ ..+++. .+.+++.|++++++++...
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~d-----a~~~np--~~~ii~------~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARD-----AKEVNP--EAPIIF------TNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHH-----HHHhCC--CCCEEE------EeCCCCcCHHHHHHHHHhh
Confidence 5678999999875422334444333 222221 234444 5677889999999988653
No 396
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.07 E-value=1.8e-05 Score=62.62 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 3568999999999999999999998764443
No 397
>PRK01889 GTPase RsgA; Reviewed
Probab=98.06 E-value=4.1e-06 Score=74.05 Aligned_cols=59 Identities=37% Similarity=0.499 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
+.+++|+|++|+|||||+|+|+|.....++.... + .|+...... ..+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~---l~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP---LPS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE---ecC-CCeecCCCchhh
Confidence 4689999999999999999999977655442211 1 122111111 222 236889999765
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=8.4e-05 Score=58.84 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=41.9
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
+..+.++||||.... +.....++..... ...++.+++|+++... .........+.+..+ ...+++||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456889999997642 2222333333222 2347999999998622 222333344433333 256778999
Q ss_pred CCCCC
Q 022188 148 DDLED 152 (301)
Q Consensus 148 D~~~~ 152 (301)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97654
No 399
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.06 E-value=5.1e-06 Score=71.48 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=61.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEE--EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
+-.++|+|++|||||||+++|+|...+.+|. .........- ........++.+.|.++..-. ..+...+
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~----i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT-----~~e~l~~ 101 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGE----ILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT-----VRENLEF 101 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceE----EEEcCEeCccCHHHHHhheEEEccCCCCCcccc-----HHHHHHH
Confidence 4679999999999999999999987743331 1111111000 001223457788887665322 2233333
Q ss_pred HhccCCCc--------cEEEEEE------ec-CCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 97 LGMAKDGI--------HAFLVVF------SV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 97 ~~~~~~~~--------~~il~v~------~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
+...+... +-++-.+ +- -..++.+.++.+.....+++. |-++++
T Consensus 102 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~----P~lliL 160 (293)
T COG1131 102 FARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD----PELLIL 160 (293)
T ss_pred HHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC----CCEEEE
Confidence 33222211 1111111 10 136788888888888887776 544543
No 400
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.04 E-value=4.8e-06 Score=72.08 Aligned_cols=64 Identities=28% Similarity=0.381 Sum_probs=46.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (301)
...++++|+|.+|+||||+||+|.....-..|. ..+.|+..+.. .-+..+.|+|.||+.-....
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV----~Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEV----KLDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhe----eccCCceeccCCceeecCCC
Confidence 455899999999999999999999877644443 23455554433 34677899999998765443
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.03 E-value=0.00018 Score=69.75 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|+|+||+|||||++++.+.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999876
No 402
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.00 E-value=3.5e-05 Score=61.10 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSG 57 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 3468999999999999999999998764443
No 403
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=0.00013 Score=60.14 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998654333
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.98 E-value=6.4e-05 Score=57.86 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
+|+++|++|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999988653
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.97 E-value=8e-05 Score=63.64 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=68.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC-------------ccccCC--------CCCcceeeEeEEE------------
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA-------------FKASAG--------SSGVTKTCEMKTT------------ 63 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~-------------~~~~~~--------~~~~t~~~~~~~~------------ 63 (301)
+.+..|+++|-||+||||.+-.|..... |..+.. ..++..-...+..
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3467899999999999999988753211 110000 0011000000000
Q ss_pred EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh---ccC-CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG---MAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (301)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (301)
-...+..+.++||.|-.... ..+..++.+... ... ..||-+++++|+..+- ......+.+.+..+-
T Consensus 217 Akar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq--nal~QAk~F~eav~l----- 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ--NALSQAKIFNEAVGL----- 286 (340)
T ss_pred HHHcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh--hHHHHHHHHHHhcCC-----
Confidence 00125688999999976643 233444444433 222 3467799999998332 223344556665553
Q ss_pred EEEEEeCCCCC
Q 022188 140 MIVVFTGGDDL 150 (301)
Q Consensus 140 ~ilv~nk~D~~ 150 (301)
.-+++||+|..
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 45889999954
No 406
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.96 E-value=4.5e-05 Score=68.12 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
-.-+++|.||||||||++.|.|...+++|
T Consensus 31 eIHaLLGENGAGKSTLm~iL~G~~~P~~G 59 (501)
T COG3845 31 EIHALLGENGAGKSTLMKILFGLYQPDSG 59 (501)
T ss_pred cEEEEeccCCCCHHHHHHHHhCcccCCcc
Confidence 45699999999999999999999886665
No 407
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=0.00016 Score=59.14 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=27.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-+|+|+|+||||||||++.|.|...+++|
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 3568999999999999999999998875555
No 408
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.95 E-value=3.3e-05 Score=60.18 Aligned_cols=90 Identities=9% Similarity=0.041 Sum_probs=57.6
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCc
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (301)
+...+|++++|+|+..++...+..+.+.+... .. ..|+++|+||+|+... ..+..++.. +.... .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~--------~~~~~--~ 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI--------LSKEY--P 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH--------HhcCC--c
Confidence 34567999999999866666666666666543 11 1389999999998754 333333332 11111 1
Q ss_pred eEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
. . ....|+..+.++++|++.+...+
T Consensus 70 ~---~-~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 T---I-AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred E---E-EEEeeccccccHHHHHHHHHHHH
Confidence 1 1 12367778889999999987654
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=9.1e-05 Score=65.32 Aligned_cols=29 Identities=21% Similarity=0.383 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
-||+||||+|+|||||+..|+|...+..+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 58999999999999999999998765444
No 410
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.94 E-value=4.3e-05 Score=60.84 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 3468999999999999999999998764443
No 411
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=0.00019 Score=58.99 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-+++|+|++|+|||||++.|+|.....+|
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 3568999999999999999999998764444
No 412
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.7e-05 Score=69.44 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++.+++++|++|+|||||++.|+|......|
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 4578999999999999999999998775444
No 413
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=0.00014 Score=58.72 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..++|+|++|+|||||++.|.|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999999964
No 414
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.92 E-value=0.00014 Score=57.97 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~ 47 (301)
++-.++|+|++|+|||||++.|+|......
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~ 53 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSS 53 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 456899999999999999999999765433
No 415
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=97.92 E-value=0.00032 Score=59.51 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHhccC--CCccEEEEEEecCCCCCH--H----------HHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 86 SEFVGKEIVKCLGMAK--DGIHAFLVVFSVTNRFSQ--E----------EETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~--~~~~~il~v~~~~~~~~~--~----------~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
+...+..+...+.... ..++++|+++++..-+.. . -+..+..+...+|..+ ||.+|+||+|.+.
T Consensus 6 d~~~W~~~L~lL~~~R~r~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~--PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 6 DAAEWQAFLDLLRRHRPRQPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRL--PVYVVFTKCDLLP 83 (266)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCC--CeEeeeECCCccc
Confidence 3445677788877653 467999999998721111 1 1456667777788777 9999999999985
Q ss_pred CccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhH
Q 022188 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKK 231 (301)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (301)
. +.+|... .+...++ ..+| -.++......... ...+.+.++.+...+.. .+.......
T Consensus 84 G----F~ef~~~-L~~~~r~--q~lG-~t~~~~~~~~~~~--~~~~~~~~~~l~~~L~~--------~~~~~l~~~---- 141 (266)
T PF14331_consen 84 G----FDEFFSD-LSEEERE--QVLG-FTFPYDEDADGDA--WAWFDEEFDELVARLNA--------RVLERLAQE---- 141 (266)
T ss_pred C----HHHHHHh-CCHHHHh--CCcc-cccCCccccccch--HHHHHHHHHHHHHHHHH--------HHHHHHHhh----
Confidence 4 7777665 3322221 1112 1111111111100 01233333332222211 000000000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCCCccccchh
Q 022188 232 AEVDSLKEYSKREISKLMGQMQESYEDRIKRMAEMVFFMLHVLASKYDMHMCSSIKSGNHFSNCVI 297 (301)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (301)
. .......--.+-.+++.++..+...+..+...- .....++-+|.||||+..
T Consensus 142 ---------~----~~~~r~~l~~FP~ql~~L~~~L~~fl~~~f~~~-~~~~~~~lRGvYftS~~q 193 (266)
T PF14331_consen 142 ---------R----DAERRAALFSFPRQLAALRPPLREFLEELFRPN-PYQEPPLLRGVYFTSATQ 193 (266)
T ss_pred ---------c----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCCeeeeeeeecCcc
Confidence 0 000001112256777888888888888887744 455559999999999753
No 416
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.4e-05 Score=65.48 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=90.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEE-----------------------------EE----
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKT-----------------------------TV---- 64 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~-----------------------------~~---- 64 (301)
.++|+-+|+.-.||||+++++.|.....-. ......|....+.. ..
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 478999999999999999999885421100 00111111111100 00
Q ss_pred ---eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC----CCCHHHHHHHHHHHHhhCcccc
Q 022188 65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN----RFSQEEETAVHRLPNLFGKNVF 137 (301)
Q Consensus 65 ---~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~----~~~~~~~~~l~~l~~~~~~~~~ 137 (301)
..--+++.++|+||..- +...+.....-.|+.++++.+.. +-+.+....++.++-
T Consensus 118 ~~~~klvRHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------- 179 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------- 179 (466)
T ss_pred CCceEEEEEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-------
Confidence 00014678999999322 11111111122377788877662 333333444443332
Q ss_pred CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
++++++-||+|+... ..-.+..++ +..++... +.++++ .||.-+.+++-+.++|-+.++.
T Consensus 180 khiiilQNKiDli~e--~~A~eq~e~-----I~kFi~~t~ae~aPiiP------isAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKE--SQALEQHEQ-----IQKFIQGTVAEGAPIIP------ISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred ceEEEEechhhhhhH--HHHHHHHHH-----HHHHHhccccCCCceee------ehhhhccChHHHHHHHHhcCCC
Confidence 289999999998865 222222222 44444332 345555 7777788999999999888764
No 417
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.89 E-value=1.4e-05 Score=63.77 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+++.+.++.++.... +-..+|+||||+|||||++.|+|+..+.+|
T Consensus 12 ~Gr~ll~~vsl~~~p--Gev~ailGPNGAGKSTlLk~LsGel~p~~G 56 (259)
T COG4559 12 AGRRLLDGVSLDLRP--GEVLAILGPNGAGKSTLLKALSGELSPDSG 56 (259)
T ss_pred ecceeccCcceeccC--CcEEEEECCCCccHHHHHHHhhCccCCCCC
Confidence 355566666655433 467899999999999999999998875554
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.89 E-value=6.6e-05 Score=60.99 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++-.++|+|++|+|||||++.|.|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999973
No 419
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.2e-05 Score=65.92 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+.++.++.-. .+-.|+|+|++|+|||||+|.|.|-..+.+|
T Consensus 18 vl~~i~L~v~--~GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 18 VLEDINLSVE--KGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EeccceeEEC--CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3344444332 3468999999999999999999998876655
No 420
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.87 E-value=1.4e-05 Score=62.24 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+.+++|+|++|+|||||+|.|.|-..+.+|
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 3468999999999999999999998775554
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.86 E-value=0.00014 Score=59.17 Aligned_cols=23 Identities=30% Similarity=0.216 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+.+++|+|++|+|||||+++|.+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36899999999999999999984
No 422
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.85 E-value=0.00043 Score=56.22 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
.+++|+|+||+|||||+++|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999987
No 423
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.84 E-value=4.1e-06 Score=68.15 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+..++++||||+|||||+|.|+|...+.+|
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 3568999999999999999999998875554
No 424
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=5.9e-05 Score=65.29 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-------------CccccCCCC----CcceeeEeEEE-Ee--------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK-------------AFKASAGSS----GVTKTCEMKTT-VL-------------- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~-------------~~~~~~~~~----~~t~~~~~~~~-~~-------------- 65 (301)
.+-.|.++|-.|+||||.+-.+.-.. .|..+.... ..-..+..+.. ..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 34578999999999999998765321 111111000 01111111111 10
Q ss_pred -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
..+..+.|+||.|-+. .+..+.+++..... .-.||-+|+|+|++-+... ....+.+++..+. .-+++
T Consensus 180 Kke~fdvIIvDTSGRh~---qe~sLfeEM~~v~~--ai~Pd~vi~VmDasiGQaa--e~Qa~aFk~~vdv-----g~vIl 247 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHK---QEASLFEEMKQVSK--AIKPDEIIFVMDASIGQAA--EAQARAFKETVDV-----GAVIL 247 (483)
T ss_pred HhcCCcEEEEeCCCchh---hhHHHHHHHHHHHh--hcCCCeEEEEEeccccHhH--HHHHHHHHHhhcc-----ceEEE
Confidence 1256889999999665 34555666665544 3479999999999833222 2233445544332 45788
Q ss_pred eCCCCCC
Q 022188 145 TGGDDLE 151 (301)
Q Consensus 145 nk~D~~~ 151 (301)
||+|...
T Consensus 248 TKlDGha 254 (483)
T KOG0780|consen 248 TKLDGHA 254 (483)
T ss_pred EecccCC
Confidence 9999653
No 425
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.79 E-value=1.8e-05 Score=60.04 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+..++|+|++|+|||||+++|+|......|
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G 40 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSG 40 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred CCEEEEEccCCCccccceeeeccccccccc
Confidence 467999999999999999999998764333
No 426
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.78 E-value=0.00028 Score=61.27 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=53.2
Q ss_pred ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC--CCCCHH------HHHHHH
Q 022188 55 TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQE------EETAVH 126 (301)
Q Consensus 55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~--~~~~~~------~~~~l~ 126 (301)
|+-.....+. ..+..+.++|.+|-.. +..+|+- ++.+++++|+|+..+ +....+ ..+.++
T Consensus 182 T~GI~e~~F~-~k~~~f~~~DvGGQRs----------eRrKWih-cFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~ 249 (354)
T KOG0082|consen 182 TTGIVEVEFT-IKGLKFRMFDVGGQRS----------ERKKWIH-CFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK 249 (354)
T ss_pred cCCeeEEEEE-eCCCceEEEeCCCcHH----------HhhhHHH-hhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH
Confidence 3333333333 5678899999999322 3344433 678999999999988 222222 233444
Q ss_pred HHHHhhCcc--ccCeEEEEEeCCCCCCC
Q 022188 127 RLPNLFGKN--VFDYMIVVFTGGDDLED 152 (301)
Q Consensus 127 ~l~~~~~~~--~~~~~ilv~nk~D~~~~ 152 (301)
.+...+..+ ...++++++||.|+...
T Consensus 250 LF~sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 250 LFESICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHHHHhcCcccccCcEEEEeecHHHHHH
Confidence 555554433 23489999999997643
No 427
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.78 E-value=0.00026 Score=64.53 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=38.9
Q ss_pred CeEEEEEeCCCCCCC---cc---ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 138 DYMIVVFTGGDDLED---HE---KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 138 ~~~ilv~nk~D~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.|++||.+|.|.... .. +..-+|+. ..++.++-.+|.-++. ++.+...+++-|...|...+.
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIq----q~LR~~cL~yGAsL~y------ts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQ----QYLRTFCLKYGASLIY------TSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHH----HHHHHHHHhcCCeEEE------eeccccccHHHHHHHHHHHhc
Confidence 399999999997532 00 11112332 2367777777877665 444555788888888776654
No 428
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=4.1e-05 Score=66.49 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=90.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~ 67 (301)
....++.++|+.-+||||....|+...-.-.. ....+-|+......+. ..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE-te 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE-TE 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-ec
Confidence 34578999999999999998887643211100 0011445555555444 45
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-----CCCCHH-HHHHHHHHHHhhCccccCeEE
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-----NRFSQE-EETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-----~~~~~~-~~~~l~~l~~~~~~~~~~~~i 141 (301)
...+++.|+||.-.+.. .+ .....++|.-++|+.+. ..|... +.+--.+|....|.. +.+
T Consensus 156 ~~~ftiLDApGHk~fv~-------nm----I~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~---~lV 221 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVP-------NM----IGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVK---HLI 221 (501)
T ss_pred ceeEEeeccCcccccch-------hh----ccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccc---eEE
Confidence 67899999999655321 11 12234558778887774 123222 333334455555554 899
Q ss_pred EEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHH
Q 022188 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201 (301)
Q Consensus 142 lv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 201 (301)
+++||+|.... ..+..++.... +..++...|.+...--...+.|.-.+.++.+..
T Consensus 222 v~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred EEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 99999996533 22344444443 566666555332211111234444455555443
No 429
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.76 E-value=2.9e-05 Score=63.40 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+||+|||||||+|.|.|...+.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3468999999999999999999988775443
No 430
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.75 E-value=2e-05 Score=68.23 Aligned_cols=61 Identities=26% Similarity=0.296 Sum_probs=43.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
+-+-|++||.+|+||||+||+|-...+ ....+. +.|...++.. -...|.|||+||+--++.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkV--CkvAPIpGETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKV--CKVAPIPGETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhccc--ccccCCCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 456799999999999999999998887 333333 3444333321 246789999999866543
No 431
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.75 E-value=0.0012 Score=58.44 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
+..+-|+||||..+|||||++++....+
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhc
Confidence 3458899999999999999999765443
No 432
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.74 E-value=3.2e-05 Score=63.33 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4568999999999999999999998654433
No 433
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.73 E-value=3.4e-05 Score=63.30 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 3468999999999999999999998654444
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.72 E-value=3.2e-05 Score=49.42 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~ 40 (301)
..+|.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999975
No 435
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=3.7e-05 Score=64.09 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999998754443
No 436
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.71 E-value=3.7e-05 Score=63.30 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 3468999999999999999999998754443
No 437
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.70 E-value=0.00024 Score=55.21 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=54.8
Q ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceE
Q 022188 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (301)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (301)
.++|++++|+|+..+....+......+.. .+ .|+++++||+|.... ..... +..+....+.+++
T Consensus 11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~~ 74 (156)
T cd01859 11 KESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPVV 74 (156)
T ss_pred hhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcEE
Confidence 35699999999985554444444333322 23 399999999997533 22211 1112222333444
Q ss_pred EecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 182 LFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
. .|++++.++++|++.+...++.
T Consensus 75 ~------iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 75 Y------VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred E------EEccccccHHHHHHHHHHHHhh
Confidence 4 6888889999999999888764
No 438
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.70 E-value=4e-05 Score=61.72 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999997654333
No 439
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.70 E-value=3.9e-05 Score=62.59 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4568999999999999999999998754443
No 440
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.69 E-value=7.2e-05 Score=70.09 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++.+++|+|++|+|||||++.|+|...+.+|
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765544
No 441
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.69 E-value=4.1e-05 Score=62.85 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3568999999999999999999998654333
No 442
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.2e-05 Score=63.09 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999997654443
No 443
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=4.7e-05 Score=61.03 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+||+|+|||||+++|-+-..+.+|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 3578999999999999999999988775555
No 444
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.69 E-value=0.00053 Score=56.83 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|+||+|||||++.+.|.....++
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 3568999999999999999999998876554
No 445
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00028 Score=54.88 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
++..++|+|++|+|||||++.|.|...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999765
No 446
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=4.3e-05 Score=62.72 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998654443
No 447
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.69 E-value=4.5e-05 Score=61.69 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++++|+||+|||||+++|+|.....+|
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G 58 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998764443
No 448
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.68 E-value=4.3e-05 Score=62.86 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999997654333
No 449
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.67 E-value=4.7e-05 Score=62.86 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998764443
No 450
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.0025 Score=48.86 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC---ccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCC----------CCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA---FKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTP----------GLFDLS 83 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtP----------G~~~~~ 83 (301)
..+|+|.|+||+||||++..|..... +..+. ..|.... .++ ..+.++|.. |+....
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR------EGGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee------cCCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 47899999999999999988764321 11110 0111110 111 123344433 111111
Q ss_pred ----CCc-HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 84 ----AGS-EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 84 ----~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..+ +...+-...++..++..+|++++ |--.++......+.+.+.+.+..+. |++.++.+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~k--pliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGK--PLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCCC--cEEEEEeccc
Confidence 112 22333455566666666676554 3333555555677777888776553 8777777654
No 451
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.67 E-value=4.9e-05 Score=62.33 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++..++|+|++|+|||||++.|+|.....+|
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998654433
No 452
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00058 Score=62.80 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG 79 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence 3568999999999999999999998754443
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5.1e-05 Score=62.10 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999997654333
No 454
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.65 E-value=4.9e-05 Score=61.99 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3468999999999999999999998654433
No 455
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=5.2e-05 Score=61.32 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4568999999999999999999998664443
No 456
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=4.6e-05 Score=62.43 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 8999999999999999999997654443
No 457
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.65 E-value=5.4e-05 Score=61.37 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 4568999999999999999999998654333
No 458
>PRK13695 putative NTPase; Provisional
Probab=97.65 E-value=0.001 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
+|+|+|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999997654
No 459
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.65 E-value=2.2e-05 Score=62.57 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=38.2
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
....+|.+.|..++... +.. ...+ ...-..+.++.|+|+. .+... ...-..+...+.. .=++++||+|
T Consensus 85 ~d~IiIE~sG~a~p~~l---~~~--~~~~-~~~~~~~~iI~vVDa~-~~~~~-~~~~~~~~~Qi~~----ADvIvlnK~D 152 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL---ILQ--DPPL-KEDFRLDSIITVVDAT-NFDEL-ENIPELLREQIAF----ADVIVLNKID 152 (178)
T ss_dssp -SEEEEEEECSSGGGGH---HHH--SHHH-HHHESESEEEEEEEGT-THGGH-TTHCHHHHHHHCT-----SEEEEE-GG
T ss_pred cCEEEECCccccccchh---hhc--cccc-cccccccceeEEeccc-ccccc-ccchhhhhhcchh----cCEEEEeccc
Confidence 46789999998775321 100 0111 1123558999999997 44222 1222223333222 4578999999
Q ss_pred CCCC
Q 022188 149 DLED 152 (301)
Q Consensus 149 ~~~~ 152 (301)
....
T Consensus 153 ~~~~ 156 (178)
T PF02492_consen 153 LVSD 156 (178)
T ss_dssp GHHH
T ss_pred cCCh
Confidence 8755
No 460
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.64 E-value=5.2e-05 Score=62.23 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~ 47 (301)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTS 55 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 356899999999999999999999765433
No 461
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.64 E-value=5.4e-05 Score=62.11 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|.|...+.+|
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 4568999999999999999999998654443
No 462
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.64 E-value=5.5e-05 Score=62.75 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3568999999999999999999998754443
No 463
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=5.6e-05 Score=63.86 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3568999999999999999999998764444
No 464
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.64 E-value=5.6e-05 Score=61.99 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999998654443
No 465
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.64 E-value=5.6e-05 Score=62.88 Aligned_cols=31 Identities=32% Similarity=0.338 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998754444
No 466
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.63 E-value=5.9e-05 Score=62.23 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998654443
No 467
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=6e-05 Score=61.57 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|.....+|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998664444
No 468
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=6e-05 Score=62.78 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998764443
No 469
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.62 E-value=6.2e-05 Score=61.14 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4578999999999999999999998764444
No 470
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.62 E-value=6.1e-05 Score=62.19 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|.|...+..|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998754433
No 471
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=5.9e-05 Score=63.09 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998754443
No 472
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.62 E-value=5.9e-05 Score=62.95 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4568999999999999999999998764444
No 473
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.62 E-value=6.4e-05 Score=61.12 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-+++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998754443
No 474
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.61 E-value=3.8e-05 Score=72.65 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=79.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE-------------------------------------
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK------------------------------------- 61 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~------------------------------------- 61 (301)
-+.|+|+|..++||||.++++.|..+.+-|.. -+|....+.
T Consensus 29 lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 29 LPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred CCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 36799999999999999999999876554421 111110000
Q ss_pred ------------------EEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH
Q 022188 62 ------------------TTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (301)
Q Consensus 62 ------------------~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 121 (301)
.....+-..+++||.||+..... ....+..++...+..+...++.+++.+... ...-..
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIAT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhhc
Confidence 00111224678999999876432 224456666666666667778888777665 222223
Q ss_pred HHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 122 ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
...++..++.-+.. .-++-++||+|..+.
T Consensus 186 s~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 186 SPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred CHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 44556666653222 268888999997654
No 475
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.61 E-value=6.4e-05 Score=63.10 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 4568999999999999999999998764444
No 476
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=6.8e-05 Score=61.12 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998764444
No 477
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=6.4e-05 Score=62.93 Aligned_cols=31 Identities=32% Similarity=0.369 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|.|...+.+|
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998754443
No 478
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.61 E-value=6.6e-05 Score=61.37 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4568999999999999999999997654443
No 479
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.61 E-value=6.3e-05 Score=63.04 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 3468999999999999999999998654443
No 480
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.60 E-value=6.3e-05 Score=65.20 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999998764444
No 481
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=6.9e-05 Score=61.40 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998764443
No 482
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.60 E-value=0.00039 Score=65.87 Aligned_cols=31 Identities=35% Similarity=0.361 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-+|+|+|++|+|||||++.|+|...+.+|
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4578999999999999999999998775544
No 483
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.60 E-value=0.00023 Score=64.32 Aligned_cols=29 Identities=38% Similarity=0.479 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAF 45 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~ 45 (301)
+.+.+.+|+|++|+|||||+++|.|...+
T Consensus 99 ~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 99 NRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred cCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 34689999999999999999999998763
No 484
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=0.00026 Score=57.87 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++...+++|++||||||+++.|+|...+.+|
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~G 57 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTEG 57 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccCc
Confidence 3577899999999999999999997765444
No 485
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.60 E-value=6.5e-05 Score=62.68 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 3568999999999999999999997654443
No 486
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.60 E-value=6.7e-05 Score=62.23 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 4578999999999999999999998754444
No 487
>PRK10908 cell division protein FtsE; Provisional
Probab=97.60 E-value=6.9e-05 Score=61.92 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998754443
No 488
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.60 E-value=6.5e-05 Score=65.09 Aligned_cols=30 Identities=37% Similarity=0.403 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++++||+|||||||++.|.|-....+|
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 467999999999999999999998876555
No 489
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.59 E-value=7.1e-05 Score=61.64 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 3568999999999999999999997654433
No 490
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.59 E-value=7e-06 Score=63.59 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe---eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ---VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+.|+|.-|+|||+++...+....-..-....+...... +-.|+.. .+.|||..|-.. +-..
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalk---Vl~wdd~t~vRlqLwdIagQer-----------fg~m 91 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALK---VLQWDDKTIVRLQLWDIAGQER-----------FGNM 91 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHH---HhccChHHHHHHHHhcchhhhh-----------hcce
Confidence 5799999999999999998764443110000111111111 1124443 457999998443 2222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHH----hhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPN----LFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~----~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
-..+|+.+++..+|+|.+...+.+- ..+.+-+.. -+|.++ |++++-||+|.... ...+ .+..+.+
T Consensus 92 trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~--a~~~------~~~~~d~ 161 (229)
T KOG4423|consen 92 TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS--AKNE------ATRQFDN 161 (229)
T ss_pred EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcc--hheeccchhccChH--hhhh------hHHHHHH
Confidence 2346889999999999985554443 222222221 234444 89999999997643 1111 0111222
Q ss_pred HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.....| |..-..++++.+.++.+....+.+.+-.+
T Consensus 162 f~keng-----f~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 162 FKKENG-----FEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred HHhccC-----ccceeeeccccccChhHHHHHHHHHHHhh
Confidence 222222 12222378888889998888777665443
No 491
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=7.2e-05 Score=62.09 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|+|||||+++|+|...+..|
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3467999999999999999999998764444
No 492
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.59 E-value=0.00023 Score=67.27 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccce-----eeEeEEEEeeCCeeEEEEeC----CCCCCCCCCcH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTK-----TCEMKTTVLKDGQVVNVIDT----PGLFDLSAGSE 87 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-~~t~-----~~~~~~~~~~~~~~~~liDt----PG~~~~~~~~~ 87 (301)
++-+++++|++|+||||++|.|.+-..+..|.... +... ..-...+....+....+-+| -.++....+++
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 45789999999999999999999877644432111 0000 00000000011111111122 12233223344
Q ss_pred HHHHHHHHHH-hc-cCCCccEEEEEEe-cCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188 88 FVGKEIVKCL-GM-AKDGIHAFLVVFS-VTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (301)
Q Consensus 88 ~~~~~~~~~~-~~-~~~~~~~il~v~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (301)
++.+....+- .. ...-|+++=-.+. ....++++++.++...+..+..+ |++++
T Consensus 434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~---~ILIL 489 (567)
T COG1132 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP---PILIL 489 (567)
T ss_pred HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC---CEEEE
Confidence 4443322220 00 0122444444443 33589999999999988887764 56555
No 493
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=7.2e-05 Score=63.10 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.++-.++|+|++|+|||||++.|+|.....+|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 45678999999999999999999998775554
No 494
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.58 E-value=7.4e-05 Score=62.07 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4578999999999999999999998764444
No 495
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.58 E-value=7.5e-05 Score=62.08 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998764444
No 496
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.58 E-value=0.00055 Score=54.06 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=55.8
Q ss_pred HHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 168 (301)
+.+++...+ ..+|++++|+|+..+....+...+..+ .+ +|+++|+||+|+... .....++
T Consensus 9 ~~~~~~~~i----~~aD~il~v~D~~~~~~~~~~~i~~~~---~~----k~~ilVlNK~Dl~~~--~~~~~~~------- 68 (171)
T cd01856 9 ALRQIKEKL----KLVDLVIEVRDARIPLSSRNPLLEKIL---GN----KPRIIVLNKADLADP--KKTKKWL------- 68 (171)
T ss_pred HHHHHHHHH----hhCCEEEEEeeccCccCcCChhhHhHh---cC----CCEEEEEehhhcCCh--HHHHHHH-------
Confidence 334444444 455999999999855554443333322 12 289999999997633 2222211
Q ss_pred HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.+...+..++. .|+..+.++++|.+.+...++
T Consensus 69 --~~~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 69 --KYFESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred --HHHHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 222222333444 677788899999999887654
No 497
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=7.2e-05 Score=62.32 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998653333
No 498
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.58 E-value=0.0002 Score=67.98 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++.+++|+|++|+|||||++.|+|.. +.+|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 45789999999999999999999977 4444
No 499
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.58 E-value=7.5e-05 Score=61.86 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3468999999999999999999997654444
No 500
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.58 E-value=7.2e-05 Score=63.21 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3468999999999999999999998754443
Done!