Query 022188
Match_columns 301
No_of_seqs 227 out of 2878
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 3.3E-29 1.1E-33 209.5 21.5 205 17-227 19-225 (247)
2 3lxx_A GTPase IMAP family memb 100.0 3.1E-29 1E-33 209.0 19.4 205 17-227 27-231 (239)
3 2xtp_A GTPase IMAP family memb 100.0 4.2E-27 1.4E-31 198.5 24.7 203 15-223 18-221 (260)
4 3iev_A GTP-binding protein ERA 99.9 2.7E-21 9.3E-26 166.5 17.6 173 15-211 6-183 (308)
5 4dhe_A Probable GTP-binding pr 99.9 6.9E-21 2.4E-25 156.5 18.5 176 17-210 27-211 (223)
6 1wf3_A GTP-binding protein; GT 99.9 1E-20 3.4E-25 162.2 18.8 165 19-210 7-173 (301)
7 1svi_A GTP-binding protein YSX 99.9 5.4E-20 1.8E-24 147.8 18.5 170 17-209 21-194 (195)
8 3pqc_A Probable GTP-binding pr 99.8 3.5E-19 1.2E-23 142.8 20.4 171 17-210 21-194 (195)
9 3def_A T7I23.11 protein; chlor 99.8 5.6E-20 1.9E-24 154.9 16.3 154 18-176 35-189 (262)
10 1h65_A Chloroplast outer envel 99.8 3.1E-19 1.1E-23 151.0 19.8 196 18-218 38-253 (270)
11 3t5d_A Septin-7; GTP-binding p 99.8 2.8E-19 9.6E-24 151.6 14.1 173 18-209 7-203 (274)
12 2gj8_A MNME, tRNA modification 99.8 1.2E-19 4.1E-24 143.1 10.3 163 18-209 3-165 (172)
13 2lkc_A Translation initiation 99.8 4.7E-19 1.6E-23 140.0 13.5 164 17-210 6-171 (178)
14 2qu8_A Putative nucleolar GTP- 99.8 2.8E-18 9.5E-23 141.5 18.0 174 17-210 27-205 (228)
15 3iby_A Ferrous iron transport 99.8 7.7E-19 2.6E-23 147.1 14.7 161 20-207 2-164 (256)
16 1z08_A RAS-related protein RAB 99.8 1.4E-18 4.7E-23 136.2 15.4 161 18-209 5-168 (170)
17 3i8s_A Ferrous iron transport 99.8 2.6E-18 8.9E-23 145.5 17.3 180 19-225 3-186 (274)
18 2dyk_A GTP-binding protein; GT 99.8 1.8E-18 6.1E-23 134.3 15.1 158 20-208 2-160 (161)
19 3k53_A Ferrous iron transport 99.8 1.4E-17 4.8E-22 140.9 21.7 165 19-211 3-167 (271)
20 2gf9_A RAS-related protein RAB 99.8 1.4E-18 4.7E-23 139.0 14.4 163 17-210 20-185 (189)
21 1ega_A Protein (GTP-binding pr 99.8 1.2E-18 4E-23 149.5 14.6 166 19-210 8-175 (301)
22 4bas_A ADP-ribosylation factor 99.8 4.4E-18 1.5E-22 137.0 16.7 172 14-211 12-190 (199)
23 3tw8_B RAS-related protein RAB 99.8 1.1E-18 3.7E-23 138.2 12.8 162 17-210 7-171 (181)
24 1z0f_A RAB14, member RAS oncog 99.8 1.5E-18 5.2E-23 137.1 13.3 160 18-208 14-176 (179)
25 2fg5_A RAB-22B, RAS-related pr 99.8 1.1E-18 3.8E-23 140.0 12.2 167 15-210 19-186 (192)
26 1z0j_A RAB-22, RAS-related pro 99.8 7.5E-19 2.6E-23 137.7 11.0 160 18-208 5-167 (170)
27 3a1s_A Iron(II) transport prot 99.8 1.6E-17 5.6E-22 139.2 19.6 162 19-209 5-166 (258)
28 1upt_A ARL1, ADP-ribosylation 99.8 3.4E-18 1.2E-22 134.1 14.5 163 17-210 5-169 (171)
29 2efe_B Small GTP-binding prote 99.8 2.3E-18 7.7E-23 136.5 13.3 162 18-210 11-175 (181)
30 1zbd_A Rabphilin-3A; G protein 99.8 5.4E-18 1.8E-22 137.1 15.8 160 19-209 8-170 (203)
31 1r2q_A RAS-related protein RAB 99.8 1.5E-18 5E-23 135.9 12.1 162 19-209 6-168 (170)
32 3tkl_A RAS-related protein RAB 99.8 3.2E-18 1.1E-22 137.4 13.9 162 18-210 15-179 (196)
33 2a5j_A RAS-related protein RAB 99.8 2E-18 6.9E-23 138.3 12.6 177 1-209 1-183 (191)
34 2bme_A RAB4A, RAS-related prot 99.8 1.6E-17 5.4E-22 132.2 17.6 161 18-209 9-172 (186)
35 2hjg_A GTP-binding protein ENG 99.8 1.5E-18 5.3E-23 156.4 13.0 180 18-215 174-354 (436)
36 2bcg_Y Protein YP2, GTP-bindin 99.8 5.5E-18 1.9E-22 137.4 14.6 162 18-210 7-171 (206)
37 3reg_A RHO-like small GTPase; 99.8 2.8E-18 9.7E-23 137.7 12.8 162 18-210 22-188 (194)
38 2g6b_A RAS-related protein RAB 99.8 1.1E-17 3.9E-22 132.3 16.1 163 18-210 9-174 (180)
39 3t5g_A GTP-binding protein RHE 99.8 1.2E-17 4.1E-22 132.4 16.2 163 18-211 5-170 (181)
40 1g16_A RAS-related protein SEC 99.8 1.4E-18 4.9E-23 136.0 10.4 160 19-210 3-165 (170)
41 2il1_A RAB12; G-protein, GDP, 99.8 2.9E-18 1E-22 137.5 12.4 164 15-209 22-189 (192)
42 1ek0_A Protein (GTP-binding pr 99.8 2E-18 6.9E-23 135.1 11.0 162 19-208 3-167 (170)
43 4dcu_A GTP-binding protein ENG 99.8 3.1E-18 1.1E-22 155.3 13.8 178 17-216 193-375 (456)
44 3q72_A GTP-binding protein RAD 99.8 6.9E-18 2.4E-22 131.8 13.9 162 19-210 2-164 (166)
45 2oil_A CATX-8, RAS-related pro 99.8 3.1E-18 1E-22 137.4 12.1 162 19-209 25-187 (193)
46 3gee_A MNME, tRNA modification 99.8 4.8E-18 1.6E-22 153.8 14.6 163 19-209 233-397 (476)
47 2erx_A GTP-binding protein DI- 99.8 2.7E-18 9.2E-23 134.7 11.4 161 19-209 3-166 (172)
48 4dsu_A GTPase KRAS, isoform 2B 99.8 3.4E-17 1.2E-21 130.5 17.6 161 18-210 3-166 (189)
49 3cph_A RAS-related protein SEC 99.8 4.3E-18 1.5E-22 138.6 12.5 163 16-210 17-182 (213)
50 1u8z_A RAS-related protein RAL 99.8 1.7E-17 5.8E-22 129.5 15.4 161 18-209 3-166 (168)
51 2fn4_A P23, RAS-related protei 99.8 2.9E-17 9.9E-22 129.9 17.0 163 16-210 6-172 (181)
52 3bc1_A RAS-related protein RAB 99.8 1.6E-17 5.6E-22 132.9 15.7 163 18-209 10-184 (195)
53 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.1E-17 3.8E-22 131.9 14.4 163 18-210 6-174 (177)
54 1ksh_A ARF-like protein 2; sma 99.8 9.6E-18 3.3E-22 133.6 14.2 164 17-210 16-180 (186)
55 2hup_A RAS-related protein RAB 99.8 9.7E-18 3.3E-22 135.5 14.3 162 19-211 29-194 (201)
56 1kao_A RAP2A; GTP-binding prot 99.8 1.4E-17 4.7E-22 129.8 14.7 160 19-209 3-165 (167)
57 2bov_A RAla, RAS-related prote 99.8 2.6E-17 8.7E-22 133.2 16.7 162 17-209 12-176 (206)
58 3dz8_A RAS-related protein RAB 99.8 3.8E-18 1.3E-22 136.7 11.6 163 19-210 23-186 (191)
59 2j1l_A RHO-related GTP-binding 99.8 2.6E-17 8.8E-22 134.3 16.6 168 18-211 33-210 (214)
60 2p5s_A RAS and EF-hand domain 99.8 1.2E-18 4.1E-23 140.6 8.4 166 18-209 27-196 (199)
61 2ew1_A RAS-related protein RAB 99.8 8.7E-18 3E-22 135.8 13.4 160 19-209 26-188 (201)
62 2h57_A ADP-ribosylation factor 99.8 4E-18 1.4E-22 136.4 11.1 161 17-209 19-186 (190)
63 1z06_A RAS-related protein RAB 99.8 5.2E-18 1.8E-22 135.6 11.7 162 17-208 18-186 (189)
64 2nzj_A GTP-binding protein REM 99.8 3.8E-17 1.3E-21 128.5 16.5 164 18-210 3-169 (175)
65 3clv_A RAB5 protein, putative; 99.8 4.6E-17 1.6E-21 131.3 17.3 159 18-210 6-204 (208)
66 1ky3_A GTP-binding protein YPT 99.8 9.4E-18 3.2E-22 132.9 12.9 165 17-209 6-177 (182)
67 1mky_A Probable GTP-binding pr 99.8 8.3E-18 2.9E-22 151.8 14.1 164 20-210 2-166 (439)
68 3oes_A GTPase rhebl1; small GT 99.8 1.1E-17 3.6E-22 135.2 13.2 163 17-210 22-187 (201)
69 2fu5_C RAS-related protein RAB 99.8 1.1E-17 3.6E-22 132.9 13.0 161 18-209 7-170 (183)
70 3geh_A MNME, tRNA modification 99.8 2.1E-18 7.1E-23 155.6 9.7 162 19-211 224-385 (462)
71 2a9k_A RAS-related protein RAL 99.8 3.5E-17 1.2E-21 130.1 15.9 162 18-210 17-181 (187)
72 2wji_A Ferrous iron transport 99.7 3.2E-17 1.1E-21 128.2 15.2 161 19-208 3-163 (165)
73 1z2a_A RAS-related protein RAB 99.7 6.4E-18 2.2E-22 132.1 10.8 159 18-208 4-165 (168)
74 2y8e_A RAB-protein 6, GH09086P 99.7 2.4E-18 8.2E-23 135.9 8.3 160 19-209 14-176 (179)
75 3b1v_A Ferrous iron uptake tra 99.7 2.1E-16 7.2E-21 133.3 20.6 161 19-209 3-163 (272)
76 2q3h_A RAS homolog gene family 99.7 3E-17 1E-21 132.4 14.8 170 15-210 16-195 (201)
77 3con_A GTPase NRAS; structural 99.7 6E-17 2E-21 129.4 16.4 161 19-211 21-184 (190)
78 1zj6_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 133.2 12.3 162 18-210 15-178 (187)
79 4dkx_A RAS-related protein RAB 99.7 1.3E-17 4.4E-22 136.0 12.5 158 19-209 13-175 (216)
80 2gf0_A GTP-binding protein DI- 99.7 2.3E-17 8E-22 132.7 13.7 162 18-210 7-171 (199)
81 1r8s_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 130.1 11.6 160 20-209 1-161 (164)
82 2o52_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 134.3 12.5 161 18-209 24-187 (200)
83 3q85_A GTP-binding protein REM 99.7 2.5E-17 8.6E-22 128.9 13.1 163 19-210 2-167 (169)
84 3cbq_A GTP-binding protein REM 99.7 2.6E-17 8.8E-22 132.4 13.4 170 12-210 16-188 (195)
85 4djt_A GTP-binding nuclear pro 99.7 4.5E-18 1.6E-22 139.1 9.0 165 18-212 10-177 (218)
86 1zd9_A ADP-ribosylation factor 99.7 1.3E-17 4.5E-22 133.2 11.4 163 18-209 21-184 (188)
87 1vg8_A RAS-related protein RAB 99.7 1.5E-17 5E-22 134.8 11.6 163 18-210 7-175 (207)
88 2ce2_X GTPase HRAS; signaling 99.7 1.2E-16 4E-21 124.3 16.3 158 20-209 4-164 (166)
89 3kkq_A RAS-related protein M-R 99.7 1.9E-16 6.6E-21 125.6 17.4 163 16-209 15-181 (183)
90 1c1y_A RAS-related protein RAP 99.7 1.4E-16 4.9E-21 124.2 16.3 159 19-208 3-165 (167)
91 2f7s_A C25KG, RAS-related prot 99.7 1.8E-17 6E-22 135.5 11.5 159 19-209 25-198 (217)
92 2gco_A H9, RHO-related GTP-bin 99.7 4.9E-17 1.7E-21 131.3 13.9 165 18-208 24-198 (201)
93 4gzl_A RAS-related C3 botulinu 99.7 2.3E-17 7.7E-22 133.7 11.7 165 17-207 28-202 (204)
94 2x77_A ADP-ribosylation factor 99.7 1.1E-17 3.8E-22 133.6 9.8 163 18-210 21-184 (189)
95 3cpj_B GTP-binding protein YPT 99.7 2.2E-17 7.7E-22 135.6 11.8 162 18-210 12-176 (223)
96 2j69_A Bacterial dynamin-like 99.7 9E-17 3.1E-21 152.2 17.5 122 18-152 68-245 (695)
97 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.4E-17 1.9E-21 129.0 13.6 166 19-210 5-180 (186)
98 1x3s_A RAS-related protein RAB 99.7 2.3E-17 7.8E-22 132.2 11.5 161 19-210 15-178 (195)
99 2h17_A ADP-ribosylation factor 99.7 1.4E-17 4.9E-22 132.1 9.8 159 18-206 20-179 (181)
100 2fh5_B SR-beta, signal recogni 99.7 6.4E-17 2.2E-21 131.8 13.9 118 18-152 6-130 (214)
101 2wjg_A FEOB, ferrous iron tran 99.7 1.1E-16 3.8E-21 127.6 14.7 164 18-211 6-170 (188)
102 2hxs_A RAB-26, RAS-related pro 99.7 5.8E-17 2E-21 127.9 12.9 164 18-210 5-173 (178)
103 1jwy_B Dynamin A GTPase domain 99.7 5.7E-17 2E-21 140.1 13.9 176 18-210 23-262 (315)
104 1mky_A Probable GTP-binding pr 99.7 8.6E-17 2.9E-21 145.1 15.6 174 18-213 179-358 (439)
105 2atx_A Small GTP binding prote 99.7 1.2E-16 3.9E-21 128.2 14.7 165 18-208 17-191 (194)
106 3t1o_A Gliding protein MGLA; G 99.7 6.5E-17 2.2E-21 129.7 13.2 165 18-210 13-192 (198)
107 2e87_A Hypothetical protein PH 99.7 6E-16 2.1E-20 135.9 20.4 168 17-210 165-336 (357)
108 2yc2_C IFT27, small RAB-relate 99.7 6.4E-17 2.2E-21 131.0 12.9 159 18-209 19-191 (208)
109 1moz_A ARL1, ADP-ribosylation 99.7 2.3E-17 7.9E-22 130.9 9.8 163 18-210 17-180 (183)
110 2hjg_A GTP-binding protein ENG 99.7 1.3E-17 4.3E-22 150.5 8.8 161 20-210 4-165 (436)
111 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.8E-21 129.8 13.6 166 19-210 25-200 (207)
112 1xzp_A Probable tRNA modificat 99.7 2.6E-16 8.9E-21 142.6 17.4 158 20-209 244-404 (482)
113 3ihw_A Centg3; RAS, centaurin, 99.7 2.4E-16 8.2E-21 125.5 15.1 161 15-210 16-180 (184)
114 2atv_A RERG, RAS-like estrogen 99.7 3.1E-16 1.1E-20 126.0 15.8 162 17-210 26-191 (196)
115 1wb1_A Translation elongation 99.7 2.4E-16 8.2E-21 143.4 16.9 161 19-209 19-188 (482)
116 3q3j_B RHO-related GTP-binding 99.7 1.9E-16 6.3E-21 129.3 14.6 167 18-210 26-203 (214)
117 3c5c_A RAS-like protein 12; GD 99.7 2.1E-16 7.2E-21 126.1 14.5 161 18-209 20-185 (187)
118 3llu_A RAS-related GTP-binding 99.7 1.9E-16 6.6E-21 127.3 14.1 175 15-207 16-194 (196)
119 1fzq_A ADP-ribosylation factor 99.7 8.7E-17 3E-21 127.7 11.9 162 18-209 15-177 (181)
120 3qq5_A Small GTP-binding prote 99.7 9.8E-18 3.4E-22 149.4 6.9 166 16-210 31-196 (423)
121 3gj0_A GTP-binding nuclear pro 99.7 8.9E-18 3E-22 137.7 5.9 162 18-211 14-176 (221)
122 1m7b_A RND3/RHOE small GTP-bin 99.7 3E-16 1E-20 124.8 14.6 166 18-208 6-181 (184)
123 2b6h_A ADP-ribosylation factor 99.7 2E-16 6.8E-21 126.8 13.6 163 17-209 27-190 (192)
124 1m2o_B GTP-binding protein SAR 99.7 7.6E-17 2.6E-21 129.1 11.0 163 17-206 21-188 (190)
125 4dcu_A GTP-binding protein ENG 99.7 1.4E-17 4.8E-22 151.0 7.4 162 19-209 23-184 (456)
126 3bwd_D RAC-like GTP-binding pr 99.7 4.1E-17 1.4E-21 129.3 9.1 165 18-208 7-179 (182)
127 2j0v_A RAC-like GTP-binding pr 99.7 9.1E-17 3.1E-21 130.7 11.1 167 18-210 8-180 (212)
128 1f6b_A SAR1; gtpases, N-termin 99.7 6.8E-17 2.3E-21 130.2 10.0 155 18-207 24-196 (198)
129 3l0i_B RAS-related protein RAB 99.7 1E-18 3.6E-23 141.0 -0.7 161 18-209 32-195 (199)
130 2cxx_A Probable GTP-binding pr 99.7 1.9E-16 6.5E-21 126.3 12.4 164 20-211 2-185 (190)
131 2iwr_A Centaurin gamma 1; ANK 99.7 3.4E-16 1.2E-20 123.6 13.7 156 18-209 6-168 (178)
132 1lnz_A SPO0B-associated GTP-bi 99.7 3.9E-17 1.3E-21 141.8 7.4 170 21-213 160-333 (342)
133 3tr5_A RF-3, peptide chain rel 99.7 1.1E-16 3.9E-21 146.6 10.8 118 18-152 12-149 (528)
134 2aka_B Dynamin-1; fusion prote 99.7 4.5E-16 1.5E-20 133.4 13.6 173 18-207 25-250 (299)
135 3sjy_A Translation initiation 99.7 5.3E-16 1.8E-20 138.5 14.5 165 18-210 7-192 (403)
136 1gwn_A RHO-related GTP-binding 99.7 8.7E-16 3E-20 124.4 14.4 166 18-208 27-202 (205)
137 3zvr_A Dynamin-1; hydrolase, D 99.7 1.2E-15 4.2E-20 143.7 17.4 166 19-206 51-274 (772)
138 2g3y_A GTP-binding protein GEM 99.7 1.4E-15 4.8E-20 123.6 15.6 163 18-209 36-202 (211)
139 3o47_A ADP-ribosylation factor 99.7 2.1E-16 7.1E-21 137.2 10.8 161 18-210 164-327 (329)
140 1kk1_A EIF2gamma; initiation o 99.7 2E-15 6.9E-20 135.0 17.4 165 18-210 9-200 (410)
141 1s0u_A EIF-2-gamma, translatio 99.7 3.6E-15 1.2E-19 133.2 19.0 165 18-210 7-198 (408)
142 2x2e_A Dynamin-1; nitration, h 99.7 1.2E-15 4.1E-20 133.8 14.4 172 19-206 31-254 (353)
143 3r7w_A Gtpase1, GTP-binding pr 99.7 3.1E-15 1.1E-19 128.6 16.4 169 19-206 3-177 (307)
144 2c78_A Elongation factor TU-A; 99.7 5.5E-16 1.9E-20 138.5 12.0 164 17-209 9-211 (405)
145 3vqt_A RF-3, peptide chain rel 99.7 9.3E-16 3.2E-20 141.3 13.9 118 18-152 30-167 (548)
146 2qtf_A Protein HFLX, GTP-bindi 99.7 4.9E-15 1.7E-19 129.9 17.7 170 20-211 180-355 (364)
147 1pui_A ENGB, probable GTP-bind 99.7 4.1E-15 1.4E-19 120.6 16.0 174 17-210 24-199 (210)
148 3j2k_7 ERF3, eukaryotic polype 99.7 1.8E-15 6.3E-20 136.2 15.2 167 15-202 13-217 (439)
149 1d2e_A Elongation factor TU (E 99.6 4.1E-15 1.4E-19 132.4 16.1 163 19-210 3-195 (397)
150 3lvq_E ARF-GAP with SH3 domain 99.6 7.2E-16 2.5E-20 141.4 11.3 165 18-212 321-486 (497)
151 1zun_B Sulfate adenylate trans 99.6 2.2E-15 7.6E-20 135.6 14.0 156 17-199 22-213 (434)
152 2qag_A Septin-2, protein NEDD5 99.6 2.5E-15 8.7E-20 131.8 13.9 171 19-208 37-235 (361)
153 3p26_A Elongation factor 1 alp 99.6 2.3E-15 8E-20 137.3 13.3 154 19-199 33-227 (483)
154 2zej_A Dardarin, leucine-rich 99.6 2.2E-15 7.5E-20 119.8 11.3 162 20-210 3-178 (184)
155 3t34_A Dynamin-related protein 99.6 3.6E-15 1.2E-19 131.1 13.4 132 18-152 33-218 (360)
156 3cb4_D GTP-binding protein LEP 99.6 4.9E-15 1.7E-19 137.3 14.6 163 18-210 3-182 (599)
157 2elf_A Protein translation elo 99.6 4.3E-15 1.5E-19 130.6 13.2 151 21-210 23-180 (370)
158 2ywe_A GTP-binding protein LEP 99.6 5.3E-15 1.8E-19 136.9 14.3 163 18-210 5-184 (600)
159 2wkq_A NPH1-1, RAS-related C3 99.6 6.6E-15 2.3E-19 127.9 13.8 165 19-209 155-329 (332)
160 3izq_1 HBS1P, elongation facto 99.6 4.5E-15 1.5E-19 138.4 13.4 157 17-200 165-362 (611)
161 2rdo_7 EF-G, elongation factor 99.6 3.1E-14 1.1E-18 134.9 19.3 206 17-253 8-242 (704)
162 3th5_A RAS-related C3 botulinu 99.4 4.8E-17 1.6E-21 131.6 0.0 165 17-207 28-202 (204)
163 3izy_P Translation initiation 99.6 2E-17 6.9E-22 151.1 -2.6 161 19-209 4-167 (537)
164 1g7s_A Translation initiation 99.6 5.9E-15 2E-19 136.9 13.0 115 19-151 5-136 (594)
165 2cjw_A GTP-binding protein GEM 99.6 8.8E-15 3E-19 117.2 12.4 162 19-209 6-171 (192)
166 2ged_A SR-beta, signal recogni 99.6 5.5E-15 1.9E-19 118.2 10.7 130 17-162 46-179 (193)
167 1jny_A EF-1-alpha, elongation 99.6 1.6E-14 5.3E-19 130.1 13.6 154 18-198 5-201 (435)
168 2f9l_A RAB11B, member RAS onco 99.6 1.6E-14 5.6E-19 116.2 12.4 160 19-209 5-167 (199)
169 1nrj_B SR-beta, signal recogni 99.6 2.7E-15 9.1E-20 122.5 7.8 120 17-152 10-135 (218)
170 1zo1_I IF2, translation initia 99.6 1.4E-16 4.9E-21 144.3 -0.9 159 18-206 3-163 (501)
171 2xex_A Elongation factor G; GT 99.6 3E-15 1E-19 141.7 7.9 119 17-152 8-142 (693)
172 2qag_C Septin-7; cell cycle, c 99.6 6.2E-14 2.1E-18 124.6 15.1 169 19-206 31-223 (418)
173 3avx_A Elongation factor TS, e 99.6 8.8E-14 3E-18 135.1 17.2 164 17-209 294-485 (1289)
174 1dar_A EF-G, elongation factor 99.6 1.3E-14 4.5E-19 137.3 10.9 120 16-152 9-144 (691)
175 1f60_A Elongation factor EEF1A 99.5 1.9E-14 6.6E-19 130.2 11.4 154 18-198 6-200 (458)
176 3j25_A Tetracycline resistance 99.5 2.4E-15 8.3E-20 141.2 5.6 117 19-152 2-134 (638)
177 1oix_A RAS-related protein RAB 99.5 1E-13 3.6E-18 110.8 13.8 159 19-208 29-190 (191)
178 2h5e_A Peptide chain release f 99.5 1.4E-14 4.8E-19 132.9 8.9 118 18-152 12-149 (529)
179 3dpu_A RAB family protein; roc 99.5 4.6E-14 1.6E-18 130.4 12.0 163 18-211 40-209 (535)
180 2qpt_A EH domain-containing pr 99.5 1.6E-14 5.6E-19 133.2 8.4 138 17-163 63-242 (550)
181 1wxq_A GTP-binding protein; st 99.5 3.2E-14 1.1E-18 126.1 9.8 91 20-116 1-114 (397)
182 4a9a_A Ribosome-interacting GT 99.5 6.3E-14 2.1E-18 122.6 11.1 122 19-150 72-195 (376)
183 1udx_A The GTP-binding protein 99.5 1.4E-13 4.7E-18 122.3 13.5 168 20-212 158-327 (416)
184 3mca_A HBS1, elongation factor 99.5 7E-16 2.4E-20 143.5 -1.4 166 17-209 175-396 (592)
185 2p67_A LAO/AO transport system 99.5 3.7E-13 1.3E-17 117.3 15.9 107 66-209 146-260 (341)
186 3p32_A Probable GTPase RV1496/ 99.5 2.1E-13 7.3E-18 119.5 14.1 108 67-210 170-284 (355)
187 2dy1_A Elongation factor G; tr 99.5 2.6E-13 9E-18 128.0 15.6 116 18-150 8-139 (665)
188 3c5h_A Glucocorticoid receptor 99.5 1.2E-13 4.1E-18 115.6 11.1 87 103-208 162-253 (255)
189 2qnr_A Septin-2, protein NEDD5 99.5 3.1E-13 1.1E-17 115.6 13.6 171 19-209 18-213 (301)
190 1r5b_A Eukaryotic peptide chai 99.5 7.7E-14 2.6E-18 126.5 10.0 156 18-201 42-243 (467)
191 4fn5_A EF-G 1, elongation fact 99.5 1.2E-13 4.2E-18 131.3 11.2 123 14-152 8-152 (709)
192 2www_A Methylmalonic aciduria 99.5 7.6E-13 2.6E-17 115.5 13.7 108 67-210 165-279 (349)
193 3sop_A Neuronal-specific septi 99.4 3.4E-13 1.2E-17 113.5 9.9 152 20-184 3-180 (270)
194 2qag_B Septin-6, protein NEDD5 99.4 9.8E-13 3.4E-17 116.5 12.7 134 20-163 43-200 (427)
195 3r7w_B Gtpase2, GTP-binding pr 99.4 3.8E-12 1.3E-16 108.8 12.8 119 21-152 1-121 (331)
196 2dby_A GTP-binding protein; GD 99.3 6.3E-12 2.1E-16 110.0 10.3 90 20-115 2-111 (368)
197 1jal_A YCHF protein; nucleotid 99.3 4.6E-12 1.6E-16 110.2 9.0 89 20-115 3-108 (363)
198 1n0u_A EF-2, elongation factor 99.3 6.1E-12 2.1E-16 121.5 10.1 117 18-150 18-163 (842)
199 1yrb_A ATP(GTP)binding protein 99.2 1.5E-10 5.2E-15 96.9 13.9 178 17-210 12-257 (262)
200 3h2y_A GTPase family protein; 99.2 1.7E-12 5.7E-17 114.1 0.0 129 20-160 161-294 (368)
201 2qm8_A GTPase/ATPase; G protei 99.2 3.2E-11 1.1E-15 104.7 7.7 107 67-209 146-260 (337)
202 3ec1_A YQEH GTPase; atnos1, at 99.1 1.8E-12 6.2E-17 114.0 -1.9 123 19-152 162-289 (369)
203 3szr_A Interferon-induced GTP- 99.1 4E-10 1.4E-14 105.3 13.1 129 20-152 46-229 (608)
204 2j37_W Signal recognition part 99.1 2.7E-10 9.4E-15 103.3 11.1 122 18-152 100-255 (504)
205 1tq4_A IIGP1, interferon-induc 99.1 1.8E-09 6E-14 95.7 15.6 169 20-211 70-254 (413)
206 2wsm_A Hydrogenase expression/ 99.1 1.1E-10 3.8E-15 95.2 7.1 154 19-210 30-214 (221)
207 1f5n_A Interferon-induced guan 99.1 4E-10 1.4E-14 103.9 9.3 107 18-130 37-147 (592)
208 2ohf_A Protein OLA1, GTP-bindi 99.0 2.4E-10 8.2E-15 100.3 7.1 90 18-114 21-127 (396)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.3E-10 1.8E-14 98.4 8.6 92 17-114 18-126 (392)
210 1puj_A YLQF, conserved hypothe 99.0 1.2E-09 4E-14 92.4 8.2 66 18-88 119-184 (282)
211 1zcb_A G alpha I/13; GTP-bindi 98.9 3E-08 1E-12 86.5 14.0 74 66-150 198-281 (362)
212 1cip_A Protein (guanine nucleo 98.8 1.2E-07 4E-12 82.5 14.4 129 66-210 190-344 (353)
213 3dm5_A SRP54, signal recogniti 98.8 1.3E-07 4.3E-12 84.3 14.7 123 18-152 99-254 (443)
214 2hf9_A Probable hydrogenase ni 98.8 2E-08 7E-13 81.8 9.0 25 18-42 37-61 (226)
215 3cnl_A YLQF, putative uncharac 98.7 7.1E-09 2.4E-13 86.6 5.1 64 20-88 100-164 (262)
216 3ohm_A Guanine nucleotide-bind 98.7 6.6E-07 2.3E-11 76.8 16.2 129 66-210 164-318 (327)
217 4fid_A G protein alpha subunit 98.7 1.5E-07 5.3E-12 81.0 12.0 75 66-151 158-242 (340)
218 3kl4_A SRP54, signal recogniti 98.6 1.2E-07 4E-12 84.5 8.7 125 18-152 96-253 (433)
219 2yhs_A FTSY, cell division pro 98.6 2.5E-07 8.4E-12 83.2 10.7 123 18-150 292-451 (503)
220 2v3c_C SRP54, signal recogniti 98.6 8.3E-08 2.8E-12 85.7 6.7 122 19-151 99-252 (432)
221 3e70_C DPA, signal recognition 98.6 1.5E-06 5.2E-11 74.8 14.2 122 17-150 127-281 (328)
222 1rj9_A FTSY, signal recognitio 98.5 1.9E-06 6.5E-11 73.4 14.7 123 18-150 101-260 (304)
223 3q5d_A Atlastin-1; G protein, 98.5 2.1E-07 7.2E-12 83.1 8.6 106 18-130 66-195 (447)
224 2xtz_A Guanine nucleotide-bind 98.5 1.3E-06 4.4E-11 76.0 12.0 70 68-150 182-263 (354)
225 3b9q_A Chloroplast SRP recepto 98.3 4.1E-06 1.4E-10 71.3 11.5 123 18-150 99-259 (302)
226 1t9h_A YLOQ, probable GTPase E 98.3 1.4E-07 4.9E-12 80.2 2.4 59 19-82 173-237 (307)
227 1vma_A Cell division protein F 98.3 1.4E-05 4.7E-10 68.1 14.0 25 18-42 103-127 (306)
228 2og2_A Putative signal recogni 98.3 5.4E-06 1.9E-10 72.0 11.6 123 18-150 156-316 (359)
229 2xxa_A Signal recognition part 98.3 7.9E-06 2.7E-10 73.0 12.3 123 17-151 98-254 (433)
230 2px0_A Flagellar biosynthesis 98.3 1.1E-05 3.9E-10 68.4 12.2 122 18-151 104-253 (296)
231 1j8m_F SRP54, signal recogniti 98.2 5.1E-06 1.8E-10 70.5 10.0 122 19-150 98-252 (297)
232 2yv5_A YJEQ protein; hydrolase 98.2 3.4E-06 1.2E-10 71.9 7.5 60 19-82 165-229 (302)
233 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-06 4E-11 76.1 3.6 30 19-48 215-245 (358)
234 2ffh_A Protein (FFH); SRP54, s 98.1 6.2E-05 2.1E-09 66.8 14.5 121 18-150 97-250 (425)
235 1zu4_A FTSY; GTPase, signal re 98.1 7.5E-05 2.6E-09 64.0 13.6 26 17-42 103-128 (320)
236 1u0l_A Probable GTPase ENGC; p 98.1 2.8E-06 9.6E-11 72.4 4.5 60 19-82 169-234 (301)
237 4ido_A Atlastin-1; GTPase, GTP 98.0 3.2E-05 1.1E-09 68.7 11.0 107 18-130 66-195 (457)
238 1ls1_A Signal recognition part 98.0 0.00016 5.5E-09 61.2 13.9 121 18-150 97-250 (295)
239 3tif_A Uncharacterized ABC tra 97.9 9.7E-06 3.3E-10 66.4 4.0 31 18-48 30-60 (235)
240 2pcj_A ABC transporter, lipopr 97.8 1.1E-05 3.9E-10 65.5 3.9 30 19-48 30-59 (224)
241 1b0u_A Histidine permease; ABC 97.8 1.5E-05 5.3E-10 66.3 4.1 31 18-48 31-61 (262)
242 1mv5_A LMRA, multidrug resista 97.8 1.9E-05 6.4E-10 65.1 4.5 31 18-48 27-57 (243)
243 2olj_A Amino acid ABC transpor 97.8 1.6E-05 5.5E-10 66.2 4.1 31 18-48 49-79 (263)
244 4g1u_C Hemin import ATP-bindin 97.8 1.7E-05 5.8E-10 66.2 4.2 30 19-48 37-66 (266)
245 1sgw_A Putative ABC transporte 97.8 1.4E-05 4.7E-10 64.5 3.5 30 19-48 35-64 (214)
246 1vpl_A ABC transporter, ATP-bi 97.8 1.7E-05 5.7E-10 65.9 4.1 31 18-48 40-70 (256)
247 1g6h_A High-affinity branched- 97.8 1.6E-05 5.4E-10 66.1 3.9 31 18-48 32-62 (257)
248 2pze_A Cystic fibrosis transme 97.8 1.7E-05 5.9E-10 64.7 3.9 30 19-48 34-63 (229)
249 3gfo_A Cobalt import ATP-bindi 97.7 1.7E-05 5.7E-10 66.5 3.9 30 19-48 34-63 (275)
250 2onk_A Molybdate/tungstate ABC 97.7 1.7E-05 5.8E-10 65.1 3.7 29 20-48 25-53 (240)
251 1ji0_A ABC transporter; ATP bi 97.7 1.8E-05 6.2E-10 65.0 3.9 30 19-48 32-61 (240)
252 2cbz_A Multidrug resistance-as 97.7 1.6E-05 5.3E-10 65.3 3.5 31 18-48 30-60 (237)
253 2ff7_A Alpha-hemolysin translo 97.7 2E-05 6.8E-10 65.1 3.9 30 19-48 35-64 (247)
254 1ye8_A Protein THEP1, hypothet 97.7 1.3E-05 4.6E-10 62.6 2.7 23 21-43 2-24 (178)
255 2ihy_A ABC transporter, ATP-bi 97.7 2.1E-05 7.3E-10 66.0 3.9 30 19-48 47-76 (279)
256 2yz2_A Putative ABC transporte 97.7 2.2E-05 7.7E-10 65.5 4.0 31 18-48 32-62 (266)
257 2nq2_C Hypothetical ABC transp 97.7 2.3E-05 7.8E-10 64.9 3.9 30 19-48 31-60 (253)
258 2ixe_A Antigen peptide transpo 97.7 2.4E-05 8.2E-10 65.5 4.0 31 18-48 44-74 (271)
259 1lvg_A Guanylate kinase, GMP k 97.7 1.3E-05 4.4E-10 63.9 2.3 25 19-43 4-28 (198)
260 1htw_A HI0065; nucleotide-bind 97.7 2.5E-05 8.5E-10 59.8 3.7 30 18-48 32-61 (158)
261 1azs_C GS-alpha; complex (lyas 97.7 0.0002 6.7E-09 63.1 9.8 73 66-150 214-297 (402)
262 1znw_A Guanylate kinase, GMP k 97.7 1.8E-05 6.3E-10 63.4 2.9 26 18-43 19-44 (207)
263 2qi9_C Vitamin B12 import ATP- 97.6 3E-05 1E-09 64.0 3.8 28 19-46 26-53 (249)
264 3tr0_A Guanylate kinase, GMP k 97.6 2.9E-05 9.9E-10 61.9 3.1 26 18-43 6-31 (205)
265 2bbs_A Cystic fibrosis transme 97.6 3.4E-05 1.2E-09 65.1 3.7 31 18-48 63-93 (290)
266 1kgd_A CASK, peripheral plasma 97.6 2.9E-05 9.8E-10 60.8 2.9 25 19-43 5-29 (180)
267 1s96_A Guanylate kinase, GMP k 97.6 2.8E-05 9.7E-10 62.9 2.9 30 15-44 12-41 (219)
268 1u0l_A Probable GTPase ENGC; p 97.6 7.7E-05 2.6E-09 63.4 5.8 102 69-205 63-168 (301)
269 2d2e_A SUFC protein; ABC-ATPas 97.6 3.5E-05 1.2E-09 63.7 3.4 24 19-42 29-52 (250)
270 3a00_A Guanylate kinase, GMP k 97.6 2.5E-05 8.5E-10 61.5 2.2 25 20-44 2-26 (186)
271 1zp6_A Hypothetical protein AT 97.6 4.9E-05 1.7E-09 59.8 3.9 25 18-42 8-32 (191)
272 3nh6_A ATP-binding cassette SU 97.6 3.3E-05 1.1E-09 65.6 3.1 31 18-48 79-109 (306)
273 2zu0_C Probable ATP-dependent 97.6 4.4E-05 1.5E-09 63.8 3.8 26 18-43 45-70 (267)
274 3tui_C Methionine import ATP-b 97.6 4.9E-05 1.7E-09 66.0 4.1 31 18-48 53-83 (366)
275 1z6g_A Guanylate kinase; struc 97.6 2.8E-05 9.6E-10 62.9 2.5 26 18-43 22-47 (218)
276 2ghi_A Transport protein; mult 97.6 4.4E-05 1.5E-09 63.5 3.6 27 18-44 45-71 (260)
277 2pjz_A Hypothetical protein ST 97.6 4.7E-05 1.6E-09 63.4 3.8 29 19-48 30-58 (263)
278 3fvq_A Fe(3+) IONS import ATP- 97.5 5E-05 1.7E-09 65.8 4.0 30 19-48 30-59 (359)
279 3c8u_A Fructokinase; YP_612366 97.5 3.9E-05 1.3E-09 61.5 2.8 28 17-44 20-47 (208)
280 3b85_A Phosphate starvation-in 97.5 2E-05 6.7E-10 63.3 0.9 30 19-49 22-51 (208)
281 2yyz_A Sugar ABC transporter, 97.5 6.5E-05 2.2E-09 65.3 4.1 31 18-48 28-58 (359)
282 2it1_A 362AA long hypothetical 97.5 6.6E-05 2.3E-09 65.3 4.1 31 18-48 28-58 (362)
283 3rlf_A Maltose/maltodextrin im 97.5 7E-05 2.4E-09 65.5 4.1 30 19-48 29-58 (381)
284 1z47_A CYSA, putative ABC-tran 97.5 6.6E-05 2.3E-09 65.1 3.9 30 19-48 41-70 (355)
285 3asz_A Uridine kinase; cytidin 97.5 5E-05 1.7E-09 60.8 2.9 25 18-42 5-29 (211)
286 1v43_A Sugar-binding transport 97.5 7.7E-05 2.6E-09 65.1 4.1 31 18-48 36-66 (372)
287 4gp7_A Metallophosphoesterase; 97.5 7.2E-05 2.5E-09 58.0 3.5 24 18-41 8-31 (171)
288 3d31_A Sulfate/molybdate ABC t 97.4 6.1E-05 2.1E-09 65.2 3.2 31 18-48 25-55 (348)
289 1g29_1 MALK, maltose transport 97.4 8.3E-05 2.9E-09 65.0 3.9 30 19-48 29-58 (372)
290 2eyu_A Twitching motility prot 97.4 6.7E-05 2.3E-09 62.4 3.1 28 17-44 23-50 (261)
291 1puj_A YLQF, conserved hypothe 97.4 0.00026 9E-09 59.5 6.7 102 74-209 4-105 (282)
292 3h2y_A GTPase family protein; 97.4 0.00043 1.5E-08 60.5 8.1 98 92-208 58-158 (368)
293 1oxx_K GLCV, glucose, ABC tran 97.4 5.8E-05 2E-09 65.5 2.5 31 18-48 30-60 (353)
294 4e22_A Cytidylate kinase; P-lo 97.4 7.8E-05 2.7E-09 61.7 3.2 31 17-47 25-58 (252)
295 2v9p_A Replication protein E1; 97.4 7.5E-05 2.5E-09 63.3 2.9 26 18-43 125-150 (305)
296 3tau_A Guanylate kinase, GMP k 97.4 9.4E-05 3.2E-09 59.3 3.3 26 18-43 7-32 (208)
297 3ney_A 55 kDa erythrocyte memb 97.4 9.2E-05 3.1E-09 58.6 3.2 26 18-43 18-43 (197)
298 2jeo_A Uridine-cytidine kinase 97.4 9.2E-05 3.1E-09 60.9 3.1 25 18-42 24-48 (245)
299 2bbw_A Adenylate kinase 4, AK4 97.3 0.00011 3.7E-09 60.5 3.5 28 19-46 27-57 (246)
300 3lnc_A Guanylate kinase, GMP k 97.3 7.7E-05 2.6E-09 60.8 2.5 25 19-43 27-52 (231)
301 3ozx_A RNAse L inhibitor; ATP 97.3 0.00015 5E-09 66.7 4.5 31 18-48 24-54 (538)
302 3aez_A Pantothenate kinase; tr 97.3 0.00012 3.9E-09 62.6 3.4 28 17-44 88-115 (312)
303 2i3b_A HCR-ntpase, human cance 97.3 8.5E-05 2.9E-09 58.6 2.3 25 20-44 2-26 (189)
304 2yv5_A YJEQ protein; hydrolase 97.3 0.00089 3.1E-08 56.8 8.7 86 100-204 76-163 (302)
305 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00017 5.7E-09 66.3 4.4 33 17-49 45-77 (538)
306 2gza_A Type IV secretion syste 97.3 0.00015 5.1E-09 63.3 3.7 27 19-45 175-201 (361)
307 3j16_B RLI1P; ribosome recycli 97.3 0.00018 6.1E-09 66.9 4.4 32 18-49 102-133 (608)
308 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.7E-09 57.9 3.2 25 19-43 6-30 (207)
309 4dzz_A Plasmid partitioning pr 97.2 0.0032 1.1E-07 49.7 11.0 68 68-149 75-142 (206)
310 4eun_A Thermoresistant glucoki 97.2 0.00014 4.9E-09 57.7 2.9 25 18-42 28-52 (200)
311 1knq_A Gluconate kinase; ALFA/ 97.2 0.00019 6.4E-09 55.6 3.5 24 18-41 7-30 (175)
312 2bdt_A BH3686; alpha-beta prot 97.2 0.00014 4.7E-09 57.2 2.6 22 20-41 3-24 (189)
313 3bk7_A ABC transporter ATP-bin 97.2 0.00022 7.6E-09 66.4 4.3 33 17-49 115-147 (607)
314 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00014 4.8E-09 62.6 2.6 27 19-45 171-197 (330)
315 3gd7_A Fusion complex of cysti 97.2 0.0002 7E-09 62.8 3.6 26 19-44 47-72 (390)
316 3jvv_A Twitching mobility prot 97.2 0.00019 6.4E-09 62.4 3.1 26 19-44 123-148 (356)
317 2qt1_A Nicotinamide riboside k 97.2 0.00037 1.3E-08 55.6 4.6 26 18-43 20-45 (207)
318 1kag_A SKI, shikimate kinase I 97.1 0.00017 5.8E-09 55.7 2.4 23 20-42 5-27 (173)
319 1sq5_A Pantothenate kinase; P- 97.1 0.00024 8.3E-09 60.5 3.4 26 17-42 78-103 (308)
320 4a74_A DNA repair and recombin 97.1 0.00021 7.1E-09 57.9 2.9 26 18-43 24-49 (231)
321 2ehv_A Hypothetical protein PH 97.1 0.00028 9.5E-09 57.9 3.5 23 18-40 29-51 (251)
322 3b5x_A Lipid A export ATP-bind 97.1 0.00032 1.1E-08 65.2 4.2 31 18-48 368-398 (582)
323 3b60_A Lipid A export ATP-bind 97.1 0.00031 1.1E-08 65.3 4.0 30 19-48 369-398 (582)
324 1yqt_A RNAse L inhibitor; ATP- 97.1 0.00035 1.2E-08 64.2 4.3 32 18-49 311-342 (538)
325 3ozx_A RNAse L inhibitor; ATP 97.1 0.00035 1.2E-08 64.1 4.2 30 19-48 294-323 (538)
326 2oap_1 GSPE-2, type II secreti 97.1 0.00025 8.4E-09 64.7 3.2 26 19-44 260-285 (511)
327 3bk7_A ABC transporter ATP-bin 97.1 0.00036 1.2E-08 65.0 4.3 31 19-49 382-412 (607)
328 3ec1_A YQEH GTPase; atnos1, at 97.1 0.00067 2.3E-08 59.3 5.9 98 93-209 61-161 (369)
329 3uie_A Adenylyl-sulfate kinase 97.1 0.00027 9.3E-09 56.1 3.1 26 18-43 24-49 (200)
330 1p9r_A General secretion pathw 97.0 0.00021 7.3E-09 63.4 2.4 27 18-44 166-192 (418)
331 2ewv_A Twitching motility prot 97.0 0.00027 9.1E-09 61.9 3.0 27 18-44 135-161 (372)
332 2yl4_A ATP-binding cassette SU 97.0 0.00031 1E-08 65.5 3.3 30 19-48 370-399 (595)
333 2qor_A Guanylate kinase; phosp 97.0 0.00037 1.3E-08 55.5 3.4 26 17-42 10-35 (204)
334 3qf4_B Uncharacterized ABC tra 97.0 0.00033 1.1E-08 65.3 3.4 31 18-48 380-410 (598)
335 3tqc_A Pantothenate kinase; bi 97.0 0.00038 1.3E-08 59.4 3.5 26 17-42 90-115 (321)
336 2vp4_A Deoxynucleoside kinase; 97.0 0.00034 1.2E-08 56.9 3.1 26 17-42 18-43 (230)
337 1jjv_A Dephospho-COA kinase; P 97.0 0.00044 1.5E-08 55.1 3.4 22 20-41 3-24 (206)
338 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00021 7.3E-09 64.2 1.7 30 18-47 137-166 (460)
339 2f1r_A Molybdopterin-guanine d 97.0 0.00017 5.9E-09 55.8 1.0 25 20-44 3-27 (171)
340 4a82_A Cystic fibrosis transme 97.0 0.00027 9.4E-09 65.6 2.5 31 18-48 366-396 (578)
341 1lw7_A Transcriptional regulat 97.0 0.00031 1.1E-08 61.4 2.7 26 19-44 170-195 (365)
342 3ec2_A DNA replication protein 97.0 0.00028 9.5E-09 55.0 2.1 25 19-43 38-62 (180)
343 3j16_B RLI1P; ribosome recycli 96.9 0.00057 1.9E-08 63.6 4.3 29 20-48 379-407 (608)
344 3euj_A Chromosome partition pr 96.9 0.00028 9.4E-09 63.6 2.0 29 20-48 30-58 (483)
345 2kjq_A DNAA-related protein; s 96.9 0.00031 1.1E-08 53.0 2.0 26 18-43 35-60 (149)
346 2if2_A Dephospho-COA kinase; a 96.9 0.00039 1.3E-08 55.3 2.6 22 20-41 2-23 (204)
347 1cke_A CK, MSSA, protein (cyti 96.9 0.00041 1.4E-08 56.0 2.8 23 20-42 6-28 (227)
348 4b4t_L 26S protease subunit RP 96.9 0.0061 2.1E-07 54.2 10.5 23 19-41 215-237 (437)
349 3thx_A DNA mismatch repair pro 96.9 0.0083 2.9E-07 58.5 12.2 21 19-39 662-682 (934)
350 1rz3_A Hypothetical protein rb 96.9 0.00048 1.6E-08 54.7 3.0 25 18-42 21-45 (201)
351 2obl_A ESCN; ATPase, hydrolase 96.9 0.00039 1.3E-08 60.2 2.6 27 18-44 70-96 (347)
352 3qf4_A ABC transporter, ATP-bi 96.9 0.00042 1.4E-08 64.5 2.9 30 19-48 369-398 (587)
353 1nij_A Hypothetical protein YJ 96.9 0.00046 1.6E-08 59.1 2.9 25 19-43 4-28 (318)
354 2iw3_A Elongation factor 3A; a 96.9 0.00038 1.3E-08 67.8 2.5 30 19-48 699-728 (986)
355 1ex7_A Guanylate kinase; subst 96.8 0.00057 2E-08 53.6 3.0 23 20-42 2-24 (186)
356 3l82_B F-box only protein 4; T 96.8 0.00069 2.3E-08 53.8 3.4 103 94-209 116-222 (227)
357 3kta_A Chromosome segregation 96.8 0.00064 2.2E-08 52.9 3.2 22 21-42 28-49 (182)
358 2cdn_A Adenylate kinase; phosp 96.8 0.00086 3E-08 53.1 3.8 22 19-40 20-41 (201)
359 3vaa_A Shikimate kinase, SK; s 96.8 0.00077 2.6E-08 53.4 3.5 24 18-41 24-47 (199)
360 3lw7_A Adenylate kinase relate 96.8 0.00074 2.5E-08 51.9 3.2 20 20-39 2-21 (179)
361 1np6_A Molybdopterin-guanine d 96.8 0.00082 2.8E-08 52.1 3.3 23 20-42 7-29 (174)
362 1odf_A YGR205W, hypothetical 3 96.7 0.00089 3.1E-08 56.4 3.7 27 17-43 29-55 (290)
363 3kb2_A SPBC2 prophage-derived 96.7 0.00085 2.9E-08 51.5 3.2 22 20-41 2-23 (173)
364 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0011 3.8E-08 49.9 3.6 21 20-40 24-44 (149)
365 4b4t_J 26S protease regulatory 96.7 0.0097 3.3E-07 52.2 10.0 23 20-42 183-205 (405)
366 2wwf_A Thymidilate kinase, put 96.7 0.0012 4.1E-08 52.6 4.0 25 17-41 8-32 (212)
367 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.7E-08 51.7 3.4 22 19-40 4-25 (186)
368 1ly1_A Polynucleotide kinase; 96.7 0.0011 3.9E-08 51.2 3.5 22 20-41 3-24 (181)
369 4b4t_I 26S protease regulatory 96.7 0.012 4.3E-07 51.8 10.3 24 19-42 216-239 (437)
370 2dpy_A FLII, flagellum-specifi 96.6 0.00073 2.5E-08 60.4 2.6 27 18-44 156-182 (438)
371 3t61_A Gluconokinase; PSI-biol 96.6 0.00093 3.2E-08 53.0 2.8 23 19-41 18-40 (202)
372 2x8a_A Nuclear valosin-contain 96.6 0.00075 2.6E-08 56.4 2.4 21 22-42 47-67 (274)
373 2yvu_A Probable adenylyl-sulfa 96.6 0.0016 5.6E-08 50.8 4.2 26 17-42 11-36 (186)
374 3thx_B DNA mismatch repair pro 96.6 0.0085 2.9E-07 58.3 9.9 23 19-41 673-695 (918)
375 1y63_A LMAJ004144AAA protein; 96.6 0.0015 5.1E-08 51.0 3.9 25 18-42 9-33 (184)
376 4b4t_K 26S protease regulatory 96.6 0.0097 3.3E-07 52.8 9.4 23 19-41 206-228 (428)
377 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.3E-08 51.4 3.4 22 20-41 4-25 (192)
378 1qhx_A CPT, protein (chloramph 96.6 0.0013 4.4E-08 50.8 3.4 23 20-42 4-26 (178)
379 1ukz_A Uridylate kinase; trans 96.6 0.0018 6.2E-08 51.2 4.3 26 16-41 12-37 (203)
380 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0011 3.6E-08 53.6 2.8 24 19-42 23-46 (235)
381 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0013 4.5E-08 57.3 3.6 21 20-40 24-44 (365)
382 2rhm_A Putative kinase; P-loop 96.5 0.0016 5.4E-08 51.0 3.6 23 19-41 5-27 (193)
383 3cwq_A Para family chromosome 96.5 0.0069 2.4E-07 48.2 7.3 65 68-150 67-133 (209)
384 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.5E-08 52.4 3.5 24 18-41 3-26 (220)
385 1cr0_A DNA primase/helicase; R 96.5 0.0012 4.2E-08 55.7 2.9 27 18-44 34-60 (296)
386 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.1E-08 51.1 3.7 25 18-42 7-31 (203)
387 2pez_A Bifunctional 3'-phospho 96.5 0.0018 6.1E-08 50.2 3.6 24 19-42 5-28 (179)
388 1qhl_A Protein (cell division 96.5 0.00014 4.7E-09 59.1 -3.0 25 21-45 29-53 (227)
389 3cnl_A YLQF, putative uncharac 96.5 0.001 3.5E-08 55.2 2.3 42 102-152 20-61 (262)
390 1xjc_A MOBB protein homolog; s 96.5 0.0017 5.9E-08 49.9 3.4 24 19-42 4-27 (169)
391 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.3E-08 51.5 3.3 21 21-41 2-22 (205)
392 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.016 5.3E-07 47.6 9.4 23 19-41 39-61 (262)
393 3trf_A Shikimate kinase, SK; a 96.5 0.0017 5.8E-08 50.5 3.3 21 20-40 6-26 (185)
394 1gvn_B Zeta; postsegregational 96.5 0.0019 6.5E-08 54.3 3.8 25 17-41 31-55 (287)
395 1ixz_A ATP-dependent metallopr 96.4 0.0012 4E-08 54.4 2.4 22 22-43 52-73 (254)
396 2v54_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 50.9 3.7 24 19-42 4-27 (204)
397 1nks_A Adenylate kinase; therm 96.4 0.0019 6.3E-08 50.5 3.3 22 20-41 2-23 (194)
398 2plr_A DTMP kinase, probable t 96.4 0.0021 7.2E-08 51.1 3.6 23 19-41 4-26 (213)
399 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.2E-08 51.8 3.2 20 21-40 2-21 (216)
400 1svm_A Large T antigen; AAA+ f 96.4 0.0016 5.4E-08 57.0 3.0 24 18-41 168-191 (377)
401 4f4c_A Multidrug resistance pr 96.4 0.0015 5.1E-08 66.4 3.2 31 18-48 1104-1134(1321)
402 2c95_A Adenylate kinase 1; tra 96.4 0.0022 7.4E-08 50.3 3.6 23 18-40 8-30 (196)
403 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.1E-08 50.3 3.5 22 19-40 3-24 (196)
404 3iij_A Coilin-interacting nucl 96.3 0.0024 8.3E-08 49.5 3.6 22 19-40 11-32 (180)
405 3dl0_A Adenylate kinase; phosp 96.3 0.002 7E-08 51.5 3.2 21 21-41 2-22 (216)
406 2iw3_A Elongation factor 3A; a 96.3 0.0016 5.3E-08 63.6 2.8 24 19-42 461-484 (986)
407 1vht_A Dephospho-COA kinase; s 96.3 0.0025 8.6E-08 51.1 3.7 23 19-41 4-26 (218)
408 3nwj_A ATSK2; P loop, shikimat 96.3 0.0015 5.2E-08 53.7 2.4 23 19-41 48-70 (250)
409 1q3t_A Cytidylate kinase; nucl 96.3 0.0024 8.3E-08 51.9 3.6 24 18-41 15-38 (236)
410 3g5u_A MCG1178, multidrug resi 96.3 0.0019 6.6E-08 65.4 3.5 30 19-48 416-445 (1284)
411 1nn5_A Similar to deoxythymidy 96.3 0.0025 8.6E-08 50.8 3.6 24 18-41 8-31 (215)
412 3zvl_A Bifunctional polynucleo 96.3 0.03 1E-06 49.6 10.8 24 18-41 257-280 (416)
413 3tlx_A Adenylate kinase 2; str 96.3 0.0028 9.5E-08 51.9 3.8 23 18-40 28-50 (243)
414 2cvh_A DNA repair and recombin 96.3 0.0021 7.2E-08 51.4 3.0 23 19-41 20-42 (220)
415 1iy2_A ATP-dependent metallopr 96.3 0.0017 5.7E-08 54.3 2.4 22 22-43 76-97 (278)
416 1in4_A RUVB, holliday junction 96.3 0.0016 5.5E-08 56.0 2.4 24 20-43 52-75 (334)
417 4aby_A DNA repair protein RECN 96.3 0.00071 2.4E-08 60.0 0.1 21 21-41 62-82 (415)
418 4f4c_A Multidrug resistance pr 96.3 0.0025 8.5E-08 64.8 4.0 31 18-48 443-473 (1321)
419 1zd8_A GTP:AMP phosphotransfer 96.2 0.0025 8.7E-08 51.4 3.3 23 19-41 7-29 (227)
420 1zak_A Adenylate kinase; ATP:A 96.2 0.0024 8.3E-08 51.3 3.1 23 19-41 5-27 (222)
421 1n0w_A DNA repair protein RAD5 96.2 0.0022 7.4E-08 52.2 2.9 24 19-42 24-47 (243)
422 1via_A Shikimate kinase; struc 96.2 0.0023 7.8E-08 49.4 2.8 21 21-41 6-26 (175)
423 3qks_A DNA double-strand break 96.2 0.0031 1.1E-07 50.1 3.6 21 20-40 24-44 (203)
424 1wb9_A DNA mismatch repair pro 96.2 0.0017 5.8E-08 62.3 2.4 26 18-43 606-631 (800)
425 2bwj_A Adenylate kinase 5; pho 96.2 0.0029 1E-07 49.7 3.3 23 19-41 12-34 (199)
426 1qf9_A UMP/CMP kinase, protein 96.2 0.0038 1.3E-07 48.7 4.0 21 20-40 7-27 (194)
427 2ze6_A Isopentenyl transferase 96.2 0.0029 9.9E-08 52.2 3.4 21 21-41 3-23 (253)
428 1t9h_A YLOQ, probable GTPase E 96.2 0.0072 2.5E-07 51.2 5.8 47 101-152 84-132 (307)
429 2p5t_B PEZT; postsegregational 96.2 0.0025 8.4E-08 52.5 2.9 26 17-42 30-55 (253)
430 3umf_A Adenylate kinase; rossm 96.1 0.0044 1.5E-07 49.7 4.2 25 18-42 28-52 (217)
431 2pt5_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 47.9 3.3 21 21-41 2-22 (168)
432 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.9E-08 52.2 1.2 22 21-42 2-23 (214)
433 3g5u_A MCG1178, multidrug resi 96.1 0.0034 1.2E-07 63.7 3.9 30 19-48 1059-1088(1284)
434 3r20_A Cytidylate kinase; stru 96.1 0.0036 1.2E-07 50.8 3.4 22 19-40 9-30 (233)
435 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 50.2 3.2 20 21-40 2-21 (214)
436 1ak2_A Adenylate kinase isoenz 96.1 0.0041 1.4E-07 50.4 3.7 24 18-41 15-38 (233)
437 2z0h_A DTMP kinase, thymidylat 96.1 0.0036 1.2E-07 49.1 3.2 21 21-41 2-22 (197)
438 1njg_A DNA polymerase III subu 96.0 0.0048 1.6E-07 49.7 4.0 23 20-42 46-68 (250)
439 1sxj_E Activator 1 40 kDa subu 96.0 0.014 4.8E-07 50.3 7.3 22 21-42 38-59 (354)
440 2pbr_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 48.9 3.2 21 21-41 2-22 (195)
441 1m7g_A Adenylylsulfate kinase; 96.0 0.0042 1.4E-07 49.5 3.6 24 19-42 25-48 (211)
442 4eaq_A DTMP kinase, thymidylat 96.0 0.0045 1.5E-07 50.2 3.8 25 18-42 25-49 (229)
443 2f6r_A COA synthase, bifunctio 96.0 0.0053 1.8E-07 51.4 4.3 23 18-40 74-96 (281)
444 3qkt_A DNA double-strand break 96.0 0.004 1.4E-07 53.7 3.6 21 20-40 24-44 (339)
445 2iyv_A Shikimate kinase, SK; t 96.0 0.0032 1.1E-07 48.9 2.7 21 20-40 3-23 (184)
446 1nlf_A Regulatory protein REPA 96.0 0.003 1E-07 52.8 2.8 24 18-41 29-52 (279)
447 3sr0_A Adenylate kinase; phosp 96.0 0.0039 1.3E-07 49.7 3.2 22 21-42 2-23 (206)
448 2vli_A Antibiotic resistance p 96.0 0.0029 9.9E-08 49.0 2.4 22 19-40 5-26 (183)
449 4b4t_H 26S protease regulatory 96.0 0.025 8.6E-07 50.4 8.6 25 18-42 242-266 (467)
450 1e6c_A Shikimate kinase; phosp 96.0 0.0036 1.2E-07 48.0 2.8 21 20-40 3-23 (173)
451 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0046 1.6E-07 51.1 3.6 23 19-41 4-26 (260)
452 1uj2_A Uridine-cytidine kinase 96.0 0.0045 1.5E-07 50.9 3.6 24 18-41 21-44 (252)
453 1qvr_A CLPB protein; coiled co 95.9 0.54 1.8E-05 45.6 18.5 24 20-43 192-215 (854)
454 1ewq_A DNA mismatch repair pro 95.9 0.0025 8.7E-08 60.8 2.1 25 19-43 576-600 (765)
455 2o8b_B DNA mismatch repair pro 95.9 0.029 1E-06 55.3 9.6 25 19-44 789-813 (1022)
456 2xb4_A Adenylate kinase; ATP-b 95.9 0.0044 1.5E-07 49.9 3.3 20 21-40 2-21 (223)
457 3cr8_A Sulfate adenylyltranfer 95.9 0.0025 8.7E-08 58.5 2.0 26 18-43 368-393 (552)
458 1lv7_A FTSH; alpha/beta domain 95.9 0.0042 1.4E-07 51.1 3.1 23 20-42 46-68 (257)
459 1jbk_A CLPB protein; beta barr 95.9 0.0054 1.9E-07 47.4 3.6 24 19-42 43-66 (195)
460 1w1w_A Structural maintenance 95.9 0.0037 1.2E-07 55.8 2.8 25 19-43 26-50 (430)
461 2grj_A Dephospho-COA kinase; T 95.9 0.0051 1.8E-07 48.4 3.3 22 19-40 12-33 (192)
462 3be4_A Adenylate kinase; malar 95.9 0.0047 1.6E-07 49.5 3.1 22 19-40 5-26 (217)
463 2o5v_A DNA replication and rep 95.9 0.0042 1.5E-07 53.9 3.0 22 20-41 27-48 (359)
464 3ux8_A Excinuclease ABC, A sub 95.8 0.0027 9.3E-08 60.0 1.8 22 19-40 348-369 (670)
465 1zuh_A Shikimate kinase; alpha 95.8 0.0055 1.9E-07 46.8 3.2 21 20-40 8-28 (168)
466 1pzn_A RAD51, DNA repair and r 95.8 0.0045 1.5E-07 53.6 2.9 26 18-43 130-155 (349)
467 1e69_A Chromosome segregation 95.8 0.0043 1.5E-07 53.1 2.7 21 20-40 25-45 (322)
468 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.038 1.3E-06 47.1 8.3 24 19-42 45-68 (322)
469 1tf7_A KAIC; homohexamer, hexa 95.6 0.0049 1.7E-07 56.5 2.8 25 18-42 38-64 (525)
470 2w58_A DNAI, primosome compone 95.6 0.0072 2.5E-07 47.7 3.3 23 20-42 55-77 (202)
471 3bos_A Putative DNA replicatio 95.6 0.0072 2.5E-07 48.8 3.4 23 19-41 52-74 (242)
472 1a7j_A Phosphoribulokinase; tr 95.6 0.0045 1.5E-07 52.1 2.1 24 18-41 4-27 (290)
473 2qmh_A HPR kinase/phosphorylas 95.6 0.0085 2.9E-07 47.1 3.6 24 19-42 34-57 (205)
474 3foz_A TRNA delta(2)-isopenten 95.6 0.009 3.1E-07 50.4 3.9 24 19-42 10-33 (316)
475 3a8t_A Adenylate isopentenyltr 95.6 0.0091 3.1E-07 51.1 4.0 24 20-43 41-64 (339)
476 3l2o_B F-box only protein 4; s 95.6 0.006 2.1E-07 50.9 2.7 96 97-209 204-307 (312)
477 3exa_A TRNA delta(2)-isopenten 95.5 0.0086 2.9E-07 50.7 3.6 24 20-43 4-27 (322)
478 2rcn_A Probable GTPase ENGC; Y 95.5 0.083 2.8E-06 45.6 9.9 48 101-152 128-175 (358)
479 1jr3_A DNA polymerase III subu 95.5 0.018 6E-07 50.0 5.7 22 21-42 40-61 (373)
480 3ake_A Cytidylate kinase; CMP 95.5 0.0082 2.8E-07 47.4 3.2 21 21-41 4-24 (208)
481 2p65_A Hypothetical protein PF 95.5 0.0069 2.4E-07 46.7 2.7 24 19-42 43-66 (187)
482 1tue_A Replication protein E1; 95.4 0.007 2.4E-07 47.9 2.5 22 20-41 59-80 (212)
483 3u61_B DNA polymerase accessor 95.4 0.14 4.8E-06 43.4 11.0 21 21-41 50-70 (324)
484 1ltq_A Polynucleotide kinase; 95.4 0.0096 3.3E-07 50.1 3.5 22 20-41 3-24 (301)
485 3d3q_A TRNA delta(2)-isopenten 95.4 0.0094 3.2E-07 51.1 3.3 23 20-42 8-30 (340)
486 3ux8_A Excinuclease ABC, A sub 95.4 0.008 2.7E-07 56.8 3.1 18 19-36 44-61 (670)
487 3auy_A DNA double-strand break 95.3 0.01 3.5E-07 51.8 3.6 21 20-40 26-46 (371)
488 3t15_A Ribulose bisphosphate c 95.3 0.015 5.2E-07 48.9 4.6 23 19-41 36-58 (293)
489 3cf0_A Transitional endoplasmi 95.3 0.011 3.6E-07 50.1 3.5 24 19-42 49-72 (301)
490 3crm_A TRNA delta(2)-isopenten 95.3 0.011 3.6E-07 50.4 3.5 23 20-42 6-28 (323)
491 2dr3_A UPF0273 protein PH0284; 95.3 0.011 3.8E-07 48.0 3.4 22 19-40 23-44 (247)
492 3v9p_A DTMP kinase, thymidylat 95.3 0.0093 3.2E-07 48.2 2.9 28 14-41 20-47 (227)
493 3b9p_A CG5977-PA, isoform A; A 95.3 0.011 3.8E-07 49.6 3.5 23 19-41 54-76 (297)
494 4fcw_A Chaperone protein CLPB; 95.2 0.015 5.3E-07 49.0 4.3 24 19-42 47-70 (311)
495 3h4m_A Proteasome-activating n 95.1 0.013 4.5E-07 48.8 3.5 24 19-42 51-74 (285)
496 3eph_A TRNA isopentenyltransfe 95.1 0.013 4.4E-07 51.4 3.5 22 20-41 3-24 (409)
497 3syl_A Protein CBBX; photosynt 95.1 0.016 5.5E-07 48.8 4.0 24 18-41 66-89 (309)
498 3n70_A Transport activator; si 95.0 0.014 4.7E-07 43.5 3.0 23 20-42 25-47 (145)
499 3m6a_A ATP-dependent protease 95.0 0.011 3.7E-07 54.4 2.8 26 18-43 107-132 (543)
500 2ga8_A Hypothetical 39.9 kDa p 95.0 0.014 5E-07 50.2 3.4 24 19-42 24-47 (359)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.97 E-value=3.3e-29 Score=209.50 Aligned_cols=205 Identities=32% Similarity=0.546 Sum_probs=157.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK 95 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~~~ 95 (301)
.+.++|+|+|.+|+|||||+|+|+|...+.+.....+.|..+...... +++..+.||||||+.+..... +....++..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456899999999999999999999998876655444556555555444 788999999999998754332 333445666
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccc-cCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV-FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
++..+.+++|++|+|+|++ +++..+...++.+.+.++... ..|+++++||+|+.. ..+++++.......++.++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 6656678999999999998 798888899999999887642 248999999999643 46777776533456899999
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (301)
.|+.+++.|++... ++..+.++.+|++.|..++..+++.+|+++++..++..
T Consensus 174 ~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~ 225 (247)
T 3lxw_A 174 ECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVL 225 (247)
T ss_dssp HTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHG
T ss_pred HcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 99999999988753 45567999999999999999999999999999877664
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=208.98 Aligned_cols=205 Identities=36% Similarity=0.646 Sum_probs=144.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
...++|+|+|++|+|||||+|+|+|...+.++....+.|..+...... +++..+.||||||+.+...+...+.+++...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 345899999999999999999999998866654444555555555444 7888999999999999877777778888888
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
+..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|.... ..+++++.. ....++.++..|
T Consensus 106 ~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~~ 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDIF 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHHc
Confidence 888889999999999998 7888888888888887776555699999999998876 677877774 556689999999
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~ 227 (301)
+.+++.|++... ++....++.+|+..+..++..+++.+|..+++..+++.
T Consensus 182 ~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~ 231 (239)
T 3lxx_A 182 GDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEE 231 (239)
T ss_dssp SSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-----------
T ss_pred CCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 999999887653 44566899999999999999888888998888766653
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.96 E-value=4.2e-27 Score=198.48 Aligned_cols=203 Identities=30% Similarity=0.555 Sum_probs=155.5
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
+.....+|+|+|++|+|||||+|+|+|...+.....+.+.|........ .+++..+.||||||+.++........+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG-SWGNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEE-EETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEE-EeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3445689999999999999999999998876655433334444444433 378899999999999987776666666777
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe-CCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
..+..+++++|++++|+|++ +++..+...+..+.+.++.....|+++++| |+|+.. ..+..++.......+..++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHH
Confidence 77777789999999999998 688888888889988887654558888888 999763 3566666543334466788
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCCchHHHHH
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRG 223 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~ 223 (301)
..++.++..|++ .++||+.+.|+++|++.|...+....+.+|..+.+..
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~ 221 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSL 221 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHH
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHH
Confidence 888888776766 7789999999999999999999887666787665543
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=2.7e-21 Score=166.53 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=121.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-CeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
+..+...|+|+|.+|||||||+|+|+|..... .+....|+........... +..+.+|||||+.++.. .....+.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i--~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI--ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccc--cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHHHH
Confidence 33455899999999999999999999988632 2333334443333344466 88999999999988652 13345555
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHH-HHHHHHhhCccccCeEEEEEeCCCCC-CCccccHHHHhcccCCchHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~nk~D~~-~~~~~~~~~~~~~~~~~~l~~ 171 (301)
......++..+|++++|+|++++.+..+... +..+... + .|+++|+||+|.. .. ..+.+.+. .
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-~----~pvilV~NK~Dl~~~~--~~~~~~~~--------~ 147 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-N----KPVIVVINKIDKIGPA--KNVLPLID--------E 147 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-C----CCEEEEEECGGGSSSG--GGGHHHHH--------H
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-C----CCEEEEEECccCCCCH--HHHHHHHH--------H
Confidence 5555556677899999999997788887665 6666552 2 2999999999987 33 33333333 2
Q ss_pred HHHHcC--CceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 172 ILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 172 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+...++ ..+++ +||.++.|+++|++.+...++..
T Consensus 148 l~~~~~~~~~i~~------vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 148 IHKKHPELTEIVP------ISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHCTTCCCEEE------CBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHhccCCCeEEE------EeCCCCCCHHHHHHHHHHhCccC
Confidence 334443 34555 78899999999999999988753
No 5
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.87 E-value=6.9e-21 Score=156.46 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=117.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH--HHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~ 94 (301)
...++|+|+|.+|+|||||+|+|++...........+.|............+..+.||||||+.+...+... ....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 346899999999999999999999987321222223344444444333345678999999998775443321 111222
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.........+|++++|+|++++++..+..++..+... +. |+++|+||+|+... ..+...+.. +...+.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l~ 174 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-GK----PIHSLLTKCDKLTR--QESINALRA-----TQKSLD 174 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-CC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-CC----CEEEEEeccccCCh--hhHHHHHHH-----HHHHHH
Confidence 2222224567999999999988888888887777652 22 89999999998765 444444433 333333
Q ss_pred H-------cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 L-------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
. .+.+++. +|++++.|+++|+++|...++.
T Consensus 175 ~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC-
T ss_pred hhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCc
Confidence 3 2334555 7888999999999999988765
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=1e-20 Score=162.17 Aligned_cols=165 Identities=19% Similarity=0.190 Sum_probs=117.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
...|+|+|++|+|||||+|+|+|..... .+..+.|+.........+++..+.+|||||+.++. ..+.+.+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 3689999999999999999999987632 22233344333333344678899999999998743 244445555666
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcccc-HHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.++..+|++++|+|++++++..+...++.+....+. .|+++++||+|+... .. +.+.+.. + ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~---~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKY--PEEAMKAYHE--------L---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSS--HHHHHHHHHH--------T---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCC---CCEEEEEECcccCCc--hHHHHHHHHH--------h---cC
Confidence 678899999999999978888877776777654322 399999999998754 22 3222222 1 12
Q ss_pred -CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+++ +||+++.++++|++.+...++.
T Consensus 146 ~~~~~~------iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 EAEPRM------LSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TSEEEE------CCTTCHHHHHHHHHHHHTTCCB
T ss_pred cCcEEE------EeCCCCCCHHHHHHHHHHhccc
Confidence 23343 7889999999999999887754
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.85 E-value=5.4e-20 Score=147.83 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=107.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|++|+|||||+|+|++...........+.|....... . +..+.+|||||+.+...+... ...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHHHH
Confidence 3568999999999999999999998763222222233343333221 2 347899999998876554321 1222222
Q ss_pred Hh---ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 97 LG---MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 97 ~~---~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.. .....+|++++|+|++++.+..+...+.++... + . |+++|+||+|+... ..+...... +...+
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~--~--p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~ 163 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G--I--PVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C--C--CEEEEEECcccCCh--HHHHHHHHH-----HHHHH
Confidence 22 223456999999999978888877766776552 2 2 99999999998765 445443333 33322
Q ss_pred H-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 Q-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
. ..+.+++. +|++++.+++++++++.+.++
T Consensus 164 ~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NIDPEDELIL------FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCCTTSEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred cccCCCceEE------EEccCCCCHHHHHHHHHHHhc
Confidence 2 12345555 788889999999999977653
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.84 E-value=3.5e-19 Score=142.81 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=114.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH--HHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~~ 94 (301)
....+|+|+|++|+|||||+|+|++....... ...+.|...... ..+..+.+|||||+......... ....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS-KTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC-SSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc-CCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 34589999999999999999999998742222 222333332221 23456889999998765433211 112222
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.........+|++++|+|++.+.+......+.++... +. |+++|+||+|+... ......... +.....
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~~----p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-NI----PFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-TC----CEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 2222234677999999999877777777777777654 22 99999999998765 455554444 455555
Q ss_pred HcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+ .+++. +|++++.+++++++++.+.+..
T Consensus 164 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIP------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence 433 35555 7888999999999999887653
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=5.6e-20 Score=154.89 Aligned_cols=154 Identities=24% Similarity=0.311 Sum_probs=111.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+|+|++|+|||||+|+|+|........ ..+.|......... +++..++||||||+.++........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999987533322 22334444333333 68889999999999887665555555555554
Q ss_pred hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
...++|++++|++++ .+++..+..+++.+.+.++...+.|+++|+||+|........+++++.. ....+..++..+
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~ 189 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG 189 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence 245789999998887 4677778889999999888777779999999999864444677777764 333455555544
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=3.1e-19 Score=150.99 Aligned_cols=196 Identities=21% Similarity=0.335 Sum_probs=127.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+++|.+|+|||||+|+|++........ ..+.|......... ..+..+.+|||||+.++........+.+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 35899999999999999999999987633322 12233333333333 67889999999999886554444444443332
Q ss_pred hccCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+++|+++||++++ .+++..+..++..+...++.+.+.|+++|+||+|........+++++.. ....++..+...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 246789999998886 3677778888899988888765569999999999875533467777654 333344443321
Q ss_pred -C---------CceEEecCCCccc---------ccchhHHHHHHHHHHHHHhhcCCCCCch
Q 022188 177 -D---------NRCVLFDNKTKDE---------AKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (301)
Q Consensus 177 -~---------~~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~~~~~~~~~~~ 218 (301)
+ .++.+..+..... .+.......|+..|...+...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 1 2334433332111 1122346689999998887765555433
No 11
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=2.8e-19 Score=151.59 Aligned_cols=173 Identities=17% Similarity=0.214 Sum_probs=101.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeeEeEEEE-eeCC--eeEEEEeCCCCCCCCCCc---H
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDG--QVVNVIDTPGLFDLSAGS---E 87 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~----~~~~t~~~~~~~~~-~~~~--~~~~liDtPG~~~~~~~~---~ 87 (301)
...+|+|+|++|+|||||+|+|++...+..... ....|+........ .+++ ..++||||||+.+..... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 347999999999999999999999887655421 00222222222222 1333 388999999997754332 1
Q ss_pred HHH----HHHHHHHhc---------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 88 FVG----KEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 88 ~~~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
.+. .++..++.. ...++|+++|+++.+ .++...+..+++.+.. + .|+++|+||+|....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~----~pvi~V~nK~D~~~~- 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--K----VNIIPLIAKADTLTP- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--T----SCEEEEESSGGGSCH-
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--c----CCEEEEEeccCCCCH-
Confidence 121 222233321 123578999999776 5788888887777765 2 299999999998765
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..+... +...+...+.+++. .++.++.++.+++++|...++
T Consensus 160 -~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 -EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCC
Confidence 555555554 56666666766655 456677899999999988765
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=1.2e-19 Score=143.11 Aligned_cols=163 Identities=20% Similarity=0.177 Sum_probs=101.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+|+|++|+|||||+|+|++........ ..+.|.......+ ..++..+.+|||||+.+... ..........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHI-HIDGMPLHIIDTAGLREASD---EVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEE-EETTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeEEE-EECCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence 34789999999999999999999876421111 1222322222222 35677899999999876432 1111111111
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
...+..+|++++|+|++++.+.....++..+.+...... |+++|+||+|+... . . ++ . ...+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~--p~ilv~NK~Dl~~~--~-~-~~-~-----------~~~~ 139 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL--PITVVRNKADITGE--T-L-GM-S-----------EVNG 139 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTC--CEEEEEECHHHHCC--C-C-EE-E-----------EETT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCC--CEEEEEECccCCcc--h-h-hh-h-----------hccC
Confidence 223567799999999986665555566666665443223 99999999996432 0 0 00 0 0012
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..++. +||+++.+++++++++...+.
T Consensus 140 ~~~~~------~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 140 HALIR------LSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEEEE------CCTTTCTTHHHHHHHHHHHC-
T ss_pred CceEE------EeCCCCCCHHHHHHHHHHHhh
Confidence 23333 889999999999999987654
No 13
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=4.7e-19 Score=140.05 Aligned_cols=164 Identities=17% Similarity=0.184 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|++|+|||||+|++++........ .+.+.......+. .++..+.+|||||.......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVT-VNDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEE-eCCceEEEEECCCCHHHHHH-----------
Confidence 345899999999999999999999877533221 1222222222233 57788999999997664321
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
....+..+|++++|+|++++........+..+... .. |+++|+||+|+.......+...+.. . ..+....
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~---~~--p~ilv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKAA---NV--PIIVAINKMDKPEANPDRVMQELME-Y----NLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG---SC--CEEEEEETTTSSCSCHHHHHHHHTT-T----TCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC---CC--CEEEEEECccCCcCCHHHHHHHHHh-c----CcChhHc
Confidence 12346788999999999866666666555544321 22 8999999999865411122222221 0 0001111
Q ss_pred C--CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 D--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+ ..++. +||+++.+++++++++...+..
T Consensus 142 ~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIFCK------LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEEEE------CCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccEEE------EecCCCCCHHHHHHHHHHhhhh
Confidence 1 13343 7889999999999999877654
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.80 E-value=2.8e-18 Score=141.51 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|.+|+|||||+|+|++....... ....|....... ....+..+.+|||||+.+.......... ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGH-FDHKLNKYQIIDTPGLLDRAFENRNTIE--MTT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEE-EEETTEEEEEEECTTTTTSCGGGCCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeee-eecCCCeEEEEECCCCcCcccchhhhHH--HHH
Confidence 45689999999999999999999987753221 122233333332 2256788999999998653321111000 111
Q ss_pred HhccCCCccEEEEEEecCCCCCHH---HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQE---EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
+...+..+|++++|+|++++.+.. ...++..+...+. ..|+++|+||+|+... ..+...... .+..+.
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~~ 172 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNM--DSLSIDNKL----LIKQIL 172 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC----CCCHHHHH----HHHHHH
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCc--hhhHHHHHH----HHHHHH
Confidence 122245679999999998554422 2344444443322 2399999999998654 222111100 133444
Q ss_pred HHcC--CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+ ..++. +||+++.+++++++++...+..
T Consensus 173 ~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 173 DNVKNPIKFSS------FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHCCSCEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEE------EecccCCCHHHHHHHHHHHHHH
Confidence 4444 44555 7888999999999998776643
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.80 E-value=7.7e-19 Score=147.13 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~ 97 (301)
++|+|+|.+|+|||||+|+|+|....... .++.|.......+. .++..+.+|||||+++...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 57999999999999999999998753322 23445444444333 6788999999999988653210 1112222221
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
. ....+|++++|+|+++ . .....+...+.+. . .|+++++||+|.... .. .......+...++
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~---~--~pvilv~NK~Dl~~~--~~--------~~~~~~~l~~~lg 140 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFEL---G--KPVVVALNMMDIAEH--RG--------ISIDTEKLESLLG 140 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS---C--SCEEEEEECHHHHHH--TT--------CEECHHHHHHHHC
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc---C--CCEEEEEEChhcCCc--CC--------cHHHHHHHHHHcC
Confidence 1 1267899999999983 1 2222333333332 2 399999999997533 11 1111344555567
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.++++ +||+++.|+++|++++...
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVIP------IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHTC
T ss_pred CCEEE------EECCCCCCHHHHHHHHHhh
Confidence 77777 8999999999999999877
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.80 E-value=1.4e-18 Score=136.22 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=100.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++...........+.+ ....... .++ ..+.+|||||.... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLN-IGGKRVNLAIWDTAGQERF-----------HA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEE-ECCEEEEEEEEECCCcHhh-----------hh
Confidence 34799999999999999999999776432222122221 1111222 333 36789999995442 22
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+....+... |+++|+||+|+........++ ...+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI--CLCIVGNKIDLEKERHVSIQE---------AESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence 23345678899999999984433232 345555555443333 999999999976431111111 334555
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..++. .|++++.+++++++++.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence 55666665 788889999999999987654
No 17
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.80 E-value=2.6e-18 Score=145.50 Aligned_cols=180 Identities=17% Similarity=0.198 Sum_probs=114.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|+|+|... ..+ ...+.|.......+. ..+..+.+|||||+.+..... ....+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 37899999999999999999999874 222 223445544444333 567889999999998865211 1111222222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
. .....+|++++|+|+++ . .....+...+.+. +. |+++++||+|.... ..+ ......+....
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-~~----p~ivv~NK~Dl~~~--~~~--------~~~~~~l~~~l 141 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-GI----PCIVALNMLDIAEK--QNI--------RIEIDALSARL 141 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-TC----CEEEEEECHHHHHH--TTE--------EECHHHHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-CC----CEEEEEECccchhh--hhH--------HHHHHHHHHhc
Confidence 1 12367899999999983 2 2233444444443 32 99999999996533 111 11134455556
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC--CCCchHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG--QPYTDELKRGAT 225 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~--~~~~~~~~~~~~ 225 (301)
+.++++ .||+++.|+++|++.+...++.... ..|..++.....
T Consensus 142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~~ 186 (274)
T 3i8s_A 142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEAD 186 (274)
T ss_dssp TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHHH
T ss_pred CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHHH
Confidence 777776 8899999999999999887654321 235555544433
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.8e-18 Score=134.34 Aligned_cols=158 Identities=20% Similarity=0.240 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
++|+++|++|+|||||+|++++....... ...+.+......... .++..+.+|||||......... .+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~----~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDKWEK----KIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEE-ETTEEEEEEECGGGCSSSSCCH----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEE-eCCceEEEEECCCCCCccchHH----HHHHHHHH
Confidence 68999999999999999999987642111 112223333333333 5778899999999876432122 22333334
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (301)
.+..+|++++|+|++++++..+......+... + . |+++|+||+|.... . +... .+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~--~--p~ilv~nK~Dl~~~--~---~~~~--------~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G--K--PVILVATKVDDPKH--E---LYLG--------PLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T--C--CEEEEEECCCSGGG--G---GGCG--------GGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C--C--CEEEEEECcccccc--h---HhHH--------HHH-hCCCC
Confidence 46778999999999977887776666666652 2 2 89999999997643 1 1111 111 2333
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.++. +|++++.+++++++++.+.+
T Consensus 137 ~~~~------~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DPIP------TSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred CeEE------EecccCCChHHHHHHHHHhC
Confidence 4444 88899999999999987654
No 19
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=1.4e-17 Score=140.88 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=109.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+|+|++|+|||||+|+|+|... ..+ ...+.|.......+. +.+..+.+|||||+.+....... +.+... .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~-~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVG-NWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSID--ELIARN-F 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEE-ECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHH--HHHHHH-H
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHH--HHHHHH-h
Confidence 37899999999999999999999875 222 223444444444333 67888999999999886543322 111111 1
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.....+|++++|+|+++ . .....++..+.+. +. .|+++++||+|+... . ........+...++.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~--------~~~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--K--------GAKIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--H--------TCCCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--c--------ccHHHHHHHHHHcCC
Confidence 12367899999999983 2 2222333333332 21 299999999996532 0 011114555566677
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
++++ +|++.+.|+.++++.+...+...
T Consensus 141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 141 PVIP------TNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CEEE------CBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cEEE------EEeCCCCCHHHHHHHHHHHHhcc
Confidence 7776 88889999999999999887654
No 20
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.79 E-value=1.4e-18 Score=139.01 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=103.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
+...+|+|+|++|+|||||+|+|++...........+.+.. ..... .. ...+.+|||||.......
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~~~l~Dt~G~~~~~~~--------- 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK--VKTVY-RHDKRIKLQIWDTAGQERYRTI--------- 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEE--EEEEE-ETTEEEEEEEEECCSCCSSCCS---------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEE--EEEEE-ECCeEEEEEEEeCCCcHHHhhh---------
Confidence 34579999999999999999999987653322222222222 12222 23 347899999997654321
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
...++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........+ ....+.
T Consensus 88 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 154 (189)
T 2gf9_A 88 --TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE---------DGRRLA 154 (189)
T ss_dssp --GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred --HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH---------HHHHHH
Confidence 2334677899999999984333222 34455555543222 399999999997643101111 134455
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +|++++.+++++++++...+..
T Consensus 155 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 155 DDLGFEFFE------ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 555666666 7888999999999999876643
No 21
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=1.2e-18 Score=149.52 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=110.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~ 97 (301)
...|+|+|++|+|||||+|+|+|..... .+..+.|+.........+++..+.++||||+. .. ...+.+.+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 4689999999999999999999987632 22223333333333344678899999999976 21 112222233333
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..++..+|++++|+|++. ++..+...++.+... + .|+++++||+|..... ..+.+. +..+....+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~-~----~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG-K----APVILAVNKVDNVQEK-ADLLPH--------LQFLASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS-S----SCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc-C----CCEEEEEECcccCccH-HHHHHH--------HHHHHHhcC
Confidence 455688999999999986 888887666655431 2 2999999999986520 222222 233333344
Q ss_pred C-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 N-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
. .+++ .|++++.++++|++.+...++.
T Consensus 148 ~~~~i~------iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 FLDIVP------ISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CSEEEE------CCTTTTTTHHHHHHHHHTTCCB
T ss_pred cCceEE------EECCCCCCHHHHHHHHHHhCCc
Confidence 3 3444 7888899999999999887764
No 22
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=4.4e-18 Score=136.99 Aligned_cols=172 Identities=13% Similarity=0.073 Sum_probs=104.8
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
++.....+|+|+|.+|+|||||+|+|++........ ..|.......+. ..+..+.+|||||....
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~----------- 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFE-KGRVAFTVFDMGGAKKF----------- 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEE-ETTEEEEEEEECCSGGG-----------
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEE-eCCEEEEEEECCCCHhH-----------
Confidence 344456899999999999999999999887633111 122222233333 67789999999996542
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc------cccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK------NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~------~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~ 166 (301)
......++..+|++|+|+|++++.+-.. ..++..+...... ....|+++|+||+|+... ...++.... ..
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~ 153 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVEI-LD 153 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHHH-HT
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHHH-hc
Confidence 2223345778999999999995443333 2333333222110 012399999999998765 334433332 10
Q ss_pred chHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+..+....+..++. +|++++.++++++++|.+.+...
T Consensus 154 --~~~~~~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 154 --LTTLMGDHPFVIFA------SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp --HHHHHTTSCEEEEE------CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred --chhhccCCeeEEEE------eeCCCccCHHHHHHHHHHHHHHH
Confidence 12222333444554 78889999999999998876553
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=138.22 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=103.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
+...+|+|+|++|+|||||+|+|++...... .....+.......+. .++ ..+.+|||||......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 73 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFRT---------- 73 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCSS----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhhh----------
Confidence 3458999999999999999999998775322 222333333333333 455 5789999999554322
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|..........+ ...+.
T Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (181)
T 3tw8_B 74 -ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA 140 (181)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred -hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence 12234677899999999985433333 234445544432 23999999999976441111111 23344
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+.+++. +|++++.+++++++++...+..
T Consensus 141 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 141 GQMGIQLFE------TSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 555666666 7888999999999999876643
No 24
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=1.5e-18 Score=137.06 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|+|++...........+.+..... .. .++ ..+.+|||||..... .....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~~-------~~~~~ 83 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERFR-------AVTRS 83 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGTC-------HHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHhh-------hhHHH
Confidence 4589999999999999999999987653222222222222222 22 233 478999999965421 11222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ +..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 84 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 148 (179)
T 1z0f_A 84 Y----YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT--VIILIGNKADLEAQRDVTYEE---------AKQFAE 148 (179)
T ss_dssp H----HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred H----hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHHHHH
Confidence 2 345699999999985433222 344455555433333 999999999986431111111 344555
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+..++. +|++++.+++++++++.+.+
T Consensus 149 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 149 ENGLLFLE------ASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 55666666 78888999999999987765
No 25
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.1e-18 Score=139.97 Aligned_cols=167 Identities=21% Similarity=0.137 Sum_probs=103.0
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
......+|+|+|++|+|||||+|+|++...........+.+......... .....+.+|||||......
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~---------- 87 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHS---------- 87 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGG----------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHh----------
Confidence 33456899999999999999999999876422222222222222211111 2345789999999654211
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........++ ...+.
T Consensus 88 -~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~ 155 (192)
T 2fg5_A 88 -LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYA 155 (192)
T ss_dssp -GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred -hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence 11123456799999999985433333 34555555543222 3999999999976421111111 34445
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +|++++.++++++++|.+.+..
T Consensus 156 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 156 ESIGAIVVE------TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHcCCEEEE------EeCCCCcCHHHHHHHHHHHHHh
Confidence 555666665 7888999999999999876643
No 26
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.78 E-value=7.5e-19 Score=137.66 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=100.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++...........+.+..... .. .. ...+.+|||||..... .
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~Dt~G~~~~~-----------~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKT--VQ-YQNELHKFLIWDTAGLERFR-----------A 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEE--EE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEE--EE-ECCeEEEEEEEcCCCchhhh-----------c
Confidence 3479999999999999999999987753322222222222221 12 23 3578999999975421 1
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.....+..+|++++|+|++++.+... ..++..+........ |+++|.||+|.... ..+.. .....+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~iilv~nK~Dl~~~--~~v~~-------~~~~~~~~ 139 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI--VVAIAGNKCDLTDV--REVME-------RDAKDYAD 139 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTS--EEEEEEECTTCGGG--CCSCH-------HHHHHHHH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECCccccc--cccCH-------HHHHHHHH
Confidence 11123456799999999985433333 345555555423233 89999999998643 11100 11233445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+.+++. .|++++.+++++++++.+.+
T Consensus 140 ~~~~~~~~------~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 140 SIHAIFVE------TSAKNAININELFIEISRRI 167 (170)
T ss_dssp HTTCEEEE------CBTTTTBSHHHHHHHHHHHC
T ss_pred HcCCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 55666665 78888999999999997765
No 27
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.78 E-value=1.6e-17 Score=139.23 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|+|....... ..+.|.......+. ..+..+.+|||||..+....... +.+...+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~--e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSID--EKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSHH--HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCHH--HHHHHHHH
Confidence 478999999999999999999998754222 23455554444333 56789999999999876543211 12222111
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
....+|++++|+|++ .+.. ...++..+.+. .. |+++++||+|.... .. .......+...++.
T Consensus 80 -~~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~~---~~--pvilv~NK~Dl~~~--~~--------i~~~~~~l~~~lg~ 141 (258)
T 3a1s_A 80 -LKGDADLVILVADSV-NPEQ-SLYLLLEILEM---EK--KVILAMTAIDEAKK--TG--------MKIDRYELQKHLGI 141 (258)
T ss_dssp -HHSCCSEEEEEEETT-SCHH-HHHHHHHHHTT---TC--CEEEEEECHHHHHH--TT--------CCBCHHHHHHHHCS
T ss_pred -hhcCCCEEEEEeCCC-chhh-HHHHHHHHHhc---CC--CEEEEEECcCCCCc--cc--------hHHHHHHHHHHcCC
Confidence 115789999999998 3322 22333333332 22 99999999996533 11 11114555566677
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
++++ +|++++.|+++|++.+.....
T Consensus 142 ~vi~------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVVF------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence 7776 888899999999999988765
No 28
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=3.4e-18 Score=134.12 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=100.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+..+|+|+|++|+|||||+|++++...... .+|.......+. +++..+.+|||||.... ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~-----------~~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVT-YKNLKFQVWDLGGLTSI-----------RPY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEE-ETTEEEEEEEECCCGGG-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEE-ECCEEEEEEECCCChhh-----------hHH
Confidence 3458999999999999999999987664221 122222223333 56889999999996542 122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH-HHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK-EILQ 174 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~-~~~~ 174 (301)
...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ....+.... +. ....
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~~ 139 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPALK 139 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhcc
Confidence 3345678899999999985544333 223332222110 012399999999998755 223222211 00 0011
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.+++++++++.+.+..
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 140 DRKWQIFK------TSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TSCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCceEEEE------CcCCCCcCHHHHHHHHHHHHhh
Confidence 11223343 7888999999999999887654
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.78 E-value=2.3e-18 Score=136.49 Aligned_cols=162 Identities=22% Similarity=0.188 Sum_probs=102.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++...........+.+.... ... .+ ...+.+|||||......
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 76 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQ--TLA-VNDATVKFEIWDTAGQERYHS----------- 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEE--EEE-ETTEEEEEEEEECCCSGGGGG-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEE--EEE-ECCEEEEEEEEeCCCChhhhh-----------
Confidence 457999999999999999999998765332222222222221 122 23 34789999999554211
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........++ ...+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~~ 145 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTYAQ 145 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHHHH
Confidence 11223456799999999985443222 44555555543222 3899999999986441111111 334445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+.+++. +|++++.++++++++|.+.+..
T Consensus 146 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 ENGLFFME------TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HTTCEEEE------CCSSSCTTHHHHHHHHHHTCC-
T ss_pred HcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 55666665 7888899999999999876543
No 30
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=5.4e-18 Score=137.05 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=101.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|+|++...........+.+ .....+. .+ ...+.+|||||.... ...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~~ 73 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIY-RNDKRIKLQIWDTAGLERY-----------RTI 73 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEE-ETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEE-ECCeEEEEEEEECCCchhh-----------cch
Confidence 4799999999999999999999877533222222222 2122222 23 347899999996542 222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+........+ ....+...
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 142 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE---------RGRQLADH 142 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH---------HHHHHHHH
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHH
Confidence 3345677899999999984433222 33444554433222 399999999998654111111 13344455
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|++++.++++++++|...+.
T Consensus 143 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 143 LGFEFFE------ASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred CCCeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 5666665 788889999999999877654
No 31
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.78 E-value=1.5e-18 Score=135.93 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|++++...........+.+......... ..+..+.+|||||..... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~-----------~~~~ 73 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYH-----------SLAP 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhh-----------hhhH
Confidence 4789999999999999999999766432222222222212111111 124578999999965421 1112
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
..+..+|++++|+|++++.+... ..++..+........ |+++|.||+|+........++ ...+....+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 142 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQE---------AQSYADDNS 142 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHHHTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCccccccCHHH---------HHHHHHHcC
Confidence 23466799999999984433222 334445544433333 899999999975431111111 233444556
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..++. +|++++.++++++++|.+.+.
T Consensus 143 ~~~~~------~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 LLFME------TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CEEEE------CCTTTCTTHHHHHHHHHHTSC
T ss_pred CeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 66665 788899999999999876553
No 32
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=137.41 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++....... ....+.......+. .++ ..+.+|||||...... ..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~-------~~-- 82 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT-------IT-- 82 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGCT-------TH--
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhhh-------hH--
Confidence 4579999999999999999999987653222 22223333333333 444 4689999999654322 11
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+......... ....+..
T Consensus 83 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~ 149 (196)
T 3tkl_A 83 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV--NKLLVGNKCDLTTKKVVDYT---------TAKEFAD 149 (196)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred --HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccccccCHH---------HHHHHHH
Confidence 123456799999999984333222 345555555443333 99999999998654111111 1334555
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+.+++. +|++++.++++++.++.+.+..
T Consensus 150 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 150 SLGIPFLE------TSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp HTTCCEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCcEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 66667776 7888899999999999877654
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.78 E-value=2e-18 Score=138.29 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=101.7
Q ss_pred CCCCCCCCCCCCCCCCC---CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEe
Q 022188 1 MGERVVDGDWKPTSPSN---GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVID 75 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liD 75 (301)
||++. -.+|..+.+.. ...+|+|+|++|+|||||+|++++...........+.+ .....+. .++ ..+.+||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~-~~~~~~~~~i~D 76 (191)
T 2a5j_A 1 MGSSH-HHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVN-IDGKQIKLQIWD 76 (191)
T ss_dssp ----------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEE-ETTEEEEEEEEC
T ss_pred CCccc-cccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEE-ECCEEEEEEEEE
Confidence 55554 44444433333 34699999999999999999999876532221111222 2222222 344 4789999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188 76 TPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (301)
Q Consensus 76 tPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~ 154 (301)
|||........ ..++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+.....
T Consensus 77 t~G~~~~~~~~-----------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~--piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 77 TAGQESFRSIT-----------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRD 143 (191)
T ss_dssp CTTGGGTSCCC-----------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCC
T ss_pred CCCchhhhhhH-----------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccCCccc
Confidence 99965533211 112456799999999984332222 344555554433233 9999999999864310
Q ss_pred ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...++ ...+....+..++. +|++++.++++++++|.+.+.
T Consensus 144 v~~~~---------~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 144 VKREE---------GEAFAREHGLIFME------TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp SCHHH---------HHHHHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred cCHHH---------HHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 11111 23344455666665 788889999999999876654
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=1.6e-17 Score=132.24 Aligned_cols=161 Identities=18% Similarity=0.141 Sum_probs=102.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++....... ....+.......+. .++ ..+.+|||||... +..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~ 74 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FRS 74 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HHH
Confidence 4589999999999999999999977652221 12222222222222 344 4789999999544 222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+.........+ ...+..
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 143 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI--VIILCGNKKDLDADREVTFLE---------ASRFAQ 143 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHHHHH
Confidence 34455788999999999984333222 234444444433333 999999999975431111111 233445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..++. +|++++.+++++++++...+.
T Consensus 144 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 144 ENELMFLE------TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 55666665 788889999999999877654
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.5e-18 Score=156.42 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=110.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||+|+|+|....... ....|+.........+++..+.+|||||+.+.....+.+........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~--~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS--NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec--CCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4589999999999999999999998753222 22223332222223367888999999998653321100000000000
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc-
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 176 (301)
..++..+|++++|+|++++.+..+..++..+.+. +. |+++++||+|+........++.... +...+...
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~~----~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~~ 321 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFLD 321 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGGT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-CC----cEEEEEECccCCCcchHHHHHHHHH-----HHHhcccCC
Confidence 1123456999999999988888887776666542 32 9999999999875521223333222 22222222
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCC
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~ 215 (301)
+.+++. +||+++.++++|++.+...+.......
T Consensus 322 ~~~~~~------~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 322 YAPILF------MSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp TSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred CCCEEE------EecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 345555 889999999999999988876654333
No 36
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.77 E-value=5.5e-18 Score=137.36 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=103.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||.......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~---------- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRTI---------- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHHH----------
Confidence 34799999999999999999999876532221 1222222222222 344 37899999997654321
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (206)
T 2bcg_Y 74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTV--LKLLVGNKCDLKDKRVVEYDV---------AKEFAD 141 (206)
T ss_dssp -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 2234677899999999984433333 334555554433333 999999999986531111111 233445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+.+++. +|++++.++++++.++...+..
T Consensus 142 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFLE------TSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 55666665 7888899999999999876654
No 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.77 E-value=2.8e-18 Score=137.73 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=103.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++...... ...|...........++. .+.+|||||.... ..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 86 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-----------DR 86 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-----------HH
Confidence 457999999999999999999998764211 122222222222224444 4599999995442 12
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|+.......+ .......+.
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~~ 156 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDV-------TKQEGDDLC 156 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCC-------CHHHHHHHH
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcc-------cHHHHHHHH
Confidence 23345678899999999985433333 335555554432 2 39999999999764300000 001133455
Q ss_pred HHcCCc-eEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+.. ++. +|++++.+++++++++.+.+..
T Consensus 157 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 157 QKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHC
T ss_pred HhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHh
Confidence 555655 665 7889999999999999887654
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-17 Score=132.29 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++........ ....+......... .++. .+.+|||||.... ..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~-----------~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLD-VDGVKVKLQMWDTAGQERF-----------RS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEE-ETTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcHHH-----------HH
Confidence 45899999999999999999999876532211 11112222111112 3443 7899999995442 22
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV--ALMLLGNKVDSAHERVVKRED---------GEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC--cEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23345677899999999984433222 345555555433233 999999999987541111111 233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.+++++++++...+..
T Consensus 145 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFME------TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44556665 7888999999999999877654
No 39
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=1.2e-17 Score=132.42 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=102.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++....... ..|...........++ ..+.+|||||.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF---------- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence 3589999999999999999999965532211 1222222222233455 46689999997764321
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...++..+|++++|+|++++-+... ..++..+...+.. ...|+++|+||+|+........++ ...+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (181)
T 3t5g_A 71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE 139 (181)
T ss_dssp -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence 1234567899999999984333222 2344444333221 123999999999975431111111 344556
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
..+..++. +|++++.++++++..+...+...
T Consensus 140 ~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 140 SWNAAFLE------SSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HTTCEEEE------CCTTSHHHHHHHHHHHHHHHHTC
T ss_pred HhCCcEEE------EecCCCCCHHHHHHHHHHHHHHh
Confidence 66666666 78889999999999998877653
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=1.4e-18 Score=136.04 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++........ ...+......... .++ ..+.+|||||........
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~~---------- 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRTIT---------- 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSCCC----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhhhH----------
Confidence 4789999999999999999999776522221 1112222222222 333 468999999965533211
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+..+|++++|+|++++.+... ..++..+........ |+++|+||+|+.... ...+ . ...+...
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~-~~~~-~--------~~~~~~~ 136 (170)
T 1g16_A 70 -TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMETRV-VTAD-Q--------GEALAKE 136 (170)
T ss_dssp -HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCTTCC-SCHH-H--------HHHHHHH
T ss_pred -HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECccCCcCc-cCHH-H--------HHHHHHH
Confidence 112456799999999984333222 345555555443233 999999999974320 1111 1 2334445
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +|++++.++++++.++...+..
T Consensus 137 ~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 5666665 7888899999999999887654
No 41
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=137.52 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=97.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
+.....+|+|+|.+|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||.... ...
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-------~~~ 91 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--STVGVDFKIKTVE-LRGKKIRLQIWDTAGQERF-------NSI 91 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGGG-------HHH
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--CccceeEEEEEEE-ECCeEEEEEEEeCCCcHHH-------HHH
Confidence 34456799999999999999999999876532221 1222222222222 344 47899999995542 111
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
...+ +..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...
T Consensus 92 ~~~~----~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilV~NK~Dl~~~~~v~~~~---------~~~ 156 (192)
T 2il1_A 92 TSAY----YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA--ELLLVGNKLDCETDREITRQQ---------GEK 156 (192)
T ss_dssp HHHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHHH---------HHH
T ss_pred HHHH----hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECcccccccccCHHH---------HHH
Confidence 2222 345599999999985443333 334455555433233 999999999976431011111 223
Q ss_pred HHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.... +..++. +|++++.++++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 157 FAQQITGMRFCE------ASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHTSTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 33332 444554 788899999999999987654
No 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=2e-18 Score=135.13 Aligned_cols=162 Identities=18% Similarity=0.126 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++...........+.+... .... .++ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~D~~G~~~~~-----------~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT--QRVT-INEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEE-ETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEE-ECCEEEEEEEEECCCChhhh-----------hh
Confidence 3789999999999999999999776532222112222211 2222 333 478999999965421 11
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+... ..++..+........ |+++++||+|..... ...+. .......+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~--~~~~v----~~~~~~~~~~~ 140 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI--IIALVGNKIDXLQEG--GERKV----AREEGEKLAEE 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGSS--CCCCS----CHHHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCccccc--cccCC----CHHHHHHHHHH
Confidence 1223457799999999985433333 334455554433333 999999999976431 00000 00112334444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+..++. .|++++.+++++++++.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 KGLLFFE------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 5666666 78888999999999987644
No 43
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=3.1e-18 Score=155.28 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=115.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCC----cHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFVGKE 92 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~----~~~~~~~ 92 (301)
....+|+++|.+|+|||||+|+|++...+.... ..+.|.......+ ..++..+.+|||||+.+.... .......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~-~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSF-TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEE-EETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEE-EECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999876533221 1222332222223 367889999999998653221 1111111
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
... ++..+|++++|+|++.+++..+..++..+.+. +. |+++|+||+|+........+++... +...
T Consensus 271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 336 (456)
T 4dcu_A 271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-GK----AVVIVVNKWDAVDKDESTMKEFEEN-----IRDH 336 (456)
T ss_dssp HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-TC----EEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-CC----CEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence 111 23456999999999988888888887777662 32 9999999999875422333443333 3333
Q ss_pred HHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCCCCC
Q 022188 173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPY 216 (301)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~ 216 (301)
+... +.+++. +||+++.++++|++.+...+.......-
T Consensus 337 ~~~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 337 FQFLDYAPILF------MSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp CGGGTTSCEEE------CCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred cccCCCCCEEE------EcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 3222 234555 8999999999999999988766544433
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=6.9e-18 Score=131.75 Aligned_cols=162 Identities=20% Similarity=0.083 Sum_probs=89.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|++++....... +...++...... .......+.+|||||..... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~-----------~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIV-VDGEEASLMVYDIWEQDGGR-----------WLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEEE-ETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEEEE-ECCEEEEEEEEECCCCccch-----------hhhh
Confidence 378999999999999999999987653222 222222221111 11223467899999965421 1222
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+........++ ...+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 137 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVFD 137 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHHTT
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHHhC
Confidence 34567799999999984433222 234444433211 1123999999999986541111111 223444556
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++. +|++++.+++++++++.+.+..
T Consensus 138 ~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 CKFIE------TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred CcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence 66666 8899999999999999876643
No 45
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=137.39 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=99.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|++...........+.+......... .....+.+|||||....... . .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-------~----~ 92 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAI-------T----S 92 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTT-------H----H
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhh-------h----H
Confidence 4799999999999999999999876532222222222211111111 12357899999998764321 1 1
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+.........+ ...+....+
T Consensus 93 ~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 161 (193)
T 2oil_A 93 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT--IVVMLVGNKSDLSQAREVPTEE---------ARMFAENNG 161 (193)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHHTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECCCcccccccCHHH---------HHHHHHHcC
Confidence 12456799999999984333222 33444444432222 3999999999976431011111 334444556
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..++. +|++++.++++++++|...+.
T Consensus 162 ~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 162 LLFLE------TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp CEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 66665 788889999999999877654
No 46
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=4.8e-18 Score=153.83 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=89.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+.+|+|+|++|+|||||+|+|++..... .+..+ .|....... ...++..+.+|||||+.++.. .+........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~-i~~~g~~l~liDT~G~~~~~~---~ve~~gi~~~ 306 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEEC-FIHDKTMFRLTDTAGLREAGE---EIEHEGIRRS 306 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--------------------CEE-EEETTEEEEEEC----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEE-EEECCeEEEEEECCCCCcchh---HHHHHHHHHH
Confidence 4689999999999999999999876421 22223 333333333 336888999999999876422 1111112223
Q ss_pred hccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++.+.... ....++... . + .|+++|+||+|+... ..... . .+....
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~--~piIvV~NK~Dl~~~--~~~~~--~--------~l~~~~ 370 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P-A--AKFLTVANKLDRAAN--ADALI--R--------AIADGT 370 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-T--SEEEEEEECTTSCTT--THHHH--H--------HHHHHH
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-C--CCEEEEEECcCCCCc--cchhH--H--------HHHhcC
Confidence 4457889999999999977666322 122233332 2 2 399999999998755 22211 1 111111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...++. +|++++.|+++|++++...+.
T Consensus 371 ~~~~i~------vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 GTEVIG------ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSCEEE------CBTTTTBSHHHHHHHHTHHHH
T ss_pred CCceEE------EEECCCCCHHHHHHHHHHHHh
Confidence 133444 899999999999999998886
No 47
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.7e-18 Score=134.67 Aligned_cols=161 Identities=17% Similarity=0.169 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++...........+.+.. .....++ ..+.+|||||..+.. . ....+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQFP----A---MQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSCH----H---HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhhH----H---HHHHh
Confidence 478999999999999999999987643222222222221 1111233 468999999976631 1 11222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+ ..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+... ..+... ....+...
T Consensus 72 ~----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~ 138 (172)
T 2erx_A 72 I----SKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART 138 (172)
T ss_dssp H----HHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred c----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence 2 34599999999984333222 3455555554321122399999999997643 111110 02233344
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|++++.+++++++++.+.+.
T Consensus 139 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 139 WKCAFME------TSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHTCC
T ss_pred hCCeEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 4556665 788899999999999987653
No 48
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=3.4e-17 Score=130.48 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++....... ..|+..........++. .+.+|||||....... ...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM-------RDQ 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC----CTTCCEEEEEEEEETTEEEEEEEEECCCC---CTT-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCchheEEEEEEECCcEEEEEEEECCCcHHHHHH-------HHH
Confidence 3579999999999999999999977642221 22222222222224554 4678999997654321 112
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+. ...+..
T Consensus 72 ~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~ 136 (189)
T 4dsu_A 72 Y----MRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLAR 136 (189)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHHH
T ss_pred H----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHHH
Confidence 2 234599999999984433222 334444444322 122399999999998644 111111 334445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+.+++. +|++++.+++++++++...+..
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 55666666 7888899999999999876643
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=4.3e-18 Score=138.59 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=101.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
.....+|+|+|++|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||.......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~-------- 85 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRTI-------- 85 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--CCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTCC--------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHHH--------
Confidence 3456899999999999999999999776522221 1222222222222 455 47899999996543221
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
...++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+.... ...+ . ...+
T Consensus 86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~-~~~~-~--------~~~~ 150 (213)
T 3cph_A 86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA--QLLLVGNKSDMETRV-VTAD-Q--------GEAL 150 (213)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS--EEEEEEECTTCSSCC-SCHH-H--------HHHH
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCcccc-cCHH-H--------HHHH
Confidence 1122457799999999984333222 345555555443333 999999999974320 1111 1 2334
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+.+++. +|++++.++++++.+|...+..
T Consensus 151 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 151 AKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 4445556665 7888899999999998876543
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.76 E-value=1.7e-17 Score=129.48 Aligned_cols=161 Identities=20% Similarity=0.163 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
+..+|+|+|++|+|||||+|++++....... ..|...........++ ..+.+|||||.... .. ....
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----AA---IRDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---C----HH---HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchh----HH---HHHH
Confidence 3489999999999999999999987642211 1122111111122344 37899999996542 11 1112
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++ ...+..
T Consensus 72 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (168)
T 1u8z_A 72 Y----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAD 137 (168)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred H----hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHHH
Confidence 2 335599999999984333222 3444555544331 123999999999976431111111 233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+.+++. .|++++.+++++++++.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence 45666665 788889999999999987653
No 51
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=2.9e-17 Score=129.90 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
.....+|+|+|++|+|||||+|++++...... ...|+..........++ ..+.+|||||........
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~------- 74 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR------- 74 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH-------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH-------
Confidence 34568999999999999999999998754221 12222222222222454 367899999976643211
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhh-CccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
..++ ..+|++++|+|++++.+... ..++..+.... ... .|+++|+||+|+... ..+.. .....
T Consensus 75 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~-------~~~~~ 139 (181)
T 2fn4_A 75 EQYM----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQ--RQVPR-------SEASA 139 (181)
T ss_dssp HHHH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGG--CCSCH-------HHHHH
T ss_pred HHHH----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccc--cccCH-------HHHHH
Confidence 1222 34599999999984322222 23333442222 222 399999999997643 11110 01233
Q ss_pred HHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+....+..++. +|++++.+++++++++...+..
T Consensus 140 ~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 140 FGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 44445666666 7888899999999999877654
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.76 E-value=1.6e-17 Score=132.87 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=101.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-----------CeeEEEEeCCCCCCCCCCc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------GQVVNVIDTPGLFDLSAGS 86 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtPG~~~~~~~~ 86 (301)
...+|+|+|++|+|||||+|+|++...........+.... ...... .+ ...+.+|||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEE-ecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 3589999999999999999999976642222111111111 011122 23 24789999999644
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccC
Q 022188 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (301)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~ 165 (301)
+......++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........+
T Consensus 83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~------- 148 (195)
T 3bc1_A 83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE------- 148 (195)
T ss_dssp ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH-------
T ss_pred ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH-------
Confidence 22223345678899999999984433333 344455544332 012399999999997643101111
Q ss_pred CchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
....+....+.+++. +|++++.++++++++|...+.
T Consensus 149 --~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 --EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp --HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 133444555666666 788889999999999877654
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.76 E-value=1.1e-17 Score=131.95 Aligned_cols=163 Identities=18% Similarity=0.069 Sum_probs=100.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++......... ..+.......+. .++ ..+.+|||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLE-VDGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEE-ETTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeEEEEEEE-ECCEEEEEEEEeCCCchh-----------hhh
Confidence 457999999999999999999997664222111 111222122222 344 3789999999543 223
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|..... ...++ ...+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHHH
Confidence 33455678899999999984433222 3344555444321 0223999999999986320 11111 2233
Q ss_pred HH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. ..+..++. +|++++.+++++++++.+.+..
T Consensus 142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 142 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 33 33445555 7888999999999999876643
No 54
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.76 E-value=9.6e-18 Score=133.61 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+..+|+|+|++|+|||||+|++++... ... .+|.......+. .++..+.+|||||... +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV-DTI----SPTLGFNIKTLE-HRGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC-SSC----CCCSSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC-Ccc----cccCccceEEEE-ECCEEEEEEECCCCHh-----------HHHH
Confidence 4568999999999999999999998762 211 122222233333 5788999999999532 2233
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ...++.... .. +. ....
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~~-~~~~ 151 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA--LSCNAIQEA-LE--LD-SIRS 151 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCS
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC--CCHHHHHHH-hC--hh-hccC
Confidence 3455788999999999985443333 233333322111 112399999999998755 333322221 00 00 0001
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+.+++. +|++++.+++++++++.+.+.+
T Consensus 152 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 152 HHWRIQG------CSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp SCEEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CceEEEE------eeCCCCCCHHHHHHHHHHHHHh
Confidence 1223333 7888999999999999888765
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.76 E-value=9.7e-18 Score=135.51 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|.+|+|||||+|++++........ ...+.......+. .++ ..+.+|||||.... ...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-----------~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQG--STIGVDFTMKTLE-IQGKRVKLQIWDTAGQERF-----------RTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEE-ETTEEEEEEEECCTTCGGG-----------HHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCC--CCcceEEEEEEEE-ECCEEEEEEEEECCCcHhH-----------HHH
Confidence 4799999999999999999999766421111 1111112122222 344 47899999996542 112
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+-.. ..++..+......+. |+++|+||+|+........++ ...+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 163 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI--VQLLIGNKSDLSELREVSLAE---------AQSLAEH 163 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCccccccccCHHH---------HHHHHHH
Confidence 2233567799999999984332222 345555555432333 999999999986431011111 3345555
Q ss_pred cCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+. .++. +|++++.++++++++|...+...
T Consensus 164 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 164 YDILCAIE------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 565 5665 78889999999999998776554
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=1.4e-17 Score=129.84 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=97.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++........ .|...........++. .+.+|||||.... ... ...+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~~---~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQF----ASM---RDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCC----HHH---HHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCcceeEEEEEEECCEEEEEEEEECCCchhh----HHH---HHHH
Confidence 3789999999999999999999766422211 1211111111223443 4899999996653 111 1122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+.........+ ...+...
T Consensus 72 ----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1kao_A 72 ----IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSSE---------GRALAEE 137 (167)
T ss_dssp ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred ----hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 334599999999984333222 3344444443221 123999999999975431111111 2334444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+.+++. +|++++.+++++++++.+.+.
T Consensus 138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 138 WGCPFME------TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 5666666 788899999999999987654
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=2.6e-17 Score=133.19 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=100.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
.+..+|+|+|++|+|||||+|++++....... ..|+..........++. .+.+|||||..... . ...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----A---IRD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----H---HHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhhH----H---HHH
Confidence 35689999999999999999999977642211 12222211112224443 78999999976531 1 111
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.+ +..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++ ...+.
T Consensus 81 ~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 146 (206)
T 2bov_A 81 NY----FRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 146 (206)
T ss_dssp HH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred HH----HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHHH
Confidence 22 334599999999984332222 334444544432 1123999999999986431111211 33344
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+..++. +|++++.++++++.+|...+.
T Consensus 147 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 147 EQWNVNYVE------TSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 455666666 788889999999999877654
No 58
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=3.8e-18 Score=136.66 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=102.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|.+|+|||||+|++++...........+.+....... .......+.+|||||... +.....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 90 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVY-RHEKRVKLQIWDTAGQER-----------YRTITT 90 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEE-ETTTTEEEEEECHHHHHH-----------CHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEE-ECCEEEEEEEEeCCChHH-----------HHHHHH
Confidence 47999999999999999999997664222211112222222211 112456799999999322 222233
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
.++..+|++++|+|++++-+... ..++..+........ |+++|+||+|+........++ ...+....+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~~ 159 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA--QVILVGNKCDMEEERVVPTEK---------GQLLAEQLG 159 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHHH---------HHHHHHHHT
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHHHcC
Confidence 34567899999999984332222 345555555432333 999999999975431111111 233445556
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..++. +|++++.+++++++++.+.+..
T Consensus 160 ~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 160 FDFFE------ASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp CEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 66666 7888999999999999877654
No 59
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.76 E-value=2.6e-17 Score=134.33 Aligned_cols=168 Identities=18% Similarity=0.116 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++....... ..|...........++. .+.+|||||.... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY----TPTVFERYMVNLQVKGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCchhh-----------hH
Confidence 4579999999999999999999986642211 11221111111223443 6899999995542 12
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-Cch
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~ 168 (301)
....++..+|++++|+|++++.+.... .++..+..... . .|+++|+||+|+... ....+.+.. .. ...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 222346688999999999844333332 34555554432 2 399999999998755 333222210 00 011
Q ss_pred HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
...+....+. .++. +|++++.+++++++++...+...
T Consensus 173 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 173 GQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 3445555565 5665 88889999999999998776543
No 60
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=140.60 Aligned_cols=166 Identities=16% Similarity=0.104 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++...........+.+.... ... .++ ..+.+|||||..... .....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~-~~~~~~~l~i~Dt~G~~~~~-------~~~~~ 96 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK--TLI-VDGERTVLQLWDTAGQERFR-------SIAKS 96 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE--EEE-ETTEEEEEEEEECTTCTTCH-------HHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE--EEE-ECCEEEEEEEEECCCCcchh-------hhHHH
Confidence 458999999999999999999997764222111112222111 122 333 468999999966531 11222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC-chHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-KPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~-~~l~~~~ 173 (301)
+ +..+|++++|+|++++.+... ..++..+........ |+++|+||+|+... ...+ ... ... .....+.
T Consensus 97 ~----~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~--~~~~-~~~-~v~~~~~~~~~ 166 (199)
T 2p5s_A 97 Y----FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETV--PIMLVGNKADIRDT--AATE-GQK-CVPGHFGEKLA 166 (199)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---C--CEEEEEECGGGHHH--HHHT-TCC-CCCHHHHHHHH
T ss_pred H----HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC--CEEEEEECcccccc--cccc-ccc-ccCHHHHHHHH
Confidence 2 334599999999984433333 344555555432233 99999999997522 0000 000 011 1123344
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+..++. +|++++.++++++.++.+.+.
T Consensus 167 ~~~~~~~~~------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 167 MTYGALFCE------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 455666666 788899999999999877653
No 61
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=8.7e-18 Score=135.83 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=101.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|.+|+|||||+|++++....... ....+.......+. .++ ..+.+|||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcHH-----------HHHH
Confidence 479999999999999999999976642211 11122222222222 444 3689999999543 2233
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~NK~Dl~~~~~v~~~~---------~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV--ITVLVGNKIDLAERREVSQQR---------AEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence 4456788999999999984332222 345555555433233 899999999976431011111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|++++.++++++.++...+.
T Consensus 161 ~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 161 QDMYYLE------TSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4556665 788899999999999876654
No 62
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=136.42 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=99.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|.+|+|||||+|++++...+.... ..|.......+. .++..+.+|||||..... ..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFK-SSSLSFTVFDMSGQGRYR-----------NL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEE-CSSCEEEEEEECCSTTTG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEE-ECCEEEEEEECCCCHHHH-----------HH
Confidence 346899999999999999999999877332221 223333333333 567899999999966532 11
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH-
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL- 173 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~- 173 (301)
...++..+|++++|+|++++.+-.. ..++..+...... ....|+++|+||+|+... ...++.. ..+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~ 152 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVS---------QLLC 152 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHH---------HHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHH---------HHhC
Confidence 2334567799999999984322222 2333333332110 012399999999998754 3332221 111
Q ss_pred -HHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 -QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 -~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
... +..++. +|++++.++++++++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWHICA------SDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEEEEE------CBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceEEEE------ccCCCCcCHHHHHHHHHHHHH
Confidence 111 223343 788899999999999987654
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=5.2e-18 Score=135.61 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=97.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
....+|+|+|.+|+|||||+|++++...........+. ......+. .++ ..+.+|||||... +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV--DFRERAVD-IDGERIKIQLWDTAGQER-----------FR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC--CEEEEEEE-ETTEEEEEEEEECCCSHH-----------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce--EEEEEEEE-ECCEEEEEEEEECCCchh-----------hh
Confidence 35589999999999999999999976653222212222 22222222 344 4789999999432 11
Q ss_pred -HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 95 -KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 95 -~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
.....++..+|++++|+|++++.+... ..++..+...+. ....|+++|+||+|+........++ ...+
T Consensus 84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~ 153 (189)
T 1z06_A 84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDL---------AQKF 153 (189)
T ss_dssp TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHH---------HHHH
Confidence 112223567799999999984332222 334455554431 1123999999999976431011111 2334
Q ss_pred HHHcCCceEEecCCCcccccch---hHHHHHHHHHHHHH
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVI 208 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~~l~~~~ 208 (301)
....+..++. +|++++ .++.+++.+|.+.+
T Consensus 154 ~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 154 ADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp HHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC---
T ss_pred HHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHH
Confidence 4455666665 788888 88999999886654
No 64
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=3.8e-17 Score=128.54 Aligned_cols=164 Identities=21% Similarity=0.170 Sum_probs=94.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++........ ..+.+..... +. .++. .+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERT--LT-VDGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEE--EE-ETTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEE--EE-ECCEEEEEEEEecCCCCccc---------hhh
Confidence 45899999999999999999999877532222 2223322221 22 3443 67899999965521 111
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 11234567899999999984433222 234444443211 1123999999999986541111111 223334
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.+++++++++...+..
T Consensus 140 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 140 VFDCKFIE------TSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp HHTSEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 44556665 8888999999999999776543
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.75 E-value=4.6e-17 Score=131.33 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------------------- 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (301)
...+|+|+|++|+|||||+|+|++...........+. ......+. .++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA--SFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC--EEEEEEEE-TTC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc--eeEEEEEE-ecCccccccccccccccccccccccccccccc
Confidence 4589999999999999999999987653221111111 11111111 222
Q ss_pred ----------eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCcccc
Q 022188 69 ----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVF 137 (301)
Q Consensus 69 ----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~ 137 (301)
..+.+|||||...... ... ..+..+|++++|+|++++.+... ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~----~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-------IVP----LYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-------THH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-------HHH----HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 6789999999655322 111 22456799999999985433333 344555555433
Q ss_pred CeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 138 ~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.|+++|+||+| ........++ +..+....+.+++. +|++++.++.++++++...+..
T Consensus 148 ~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 39999999999 3221122221 34455556666666 7888899999999999876543
No 66
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.75 E-value=9.4e-18 Score=132.86 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=94.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
....+|+|+|++|+|||||+|++++.......... .+.......+. .+ ...+.+|||||... +
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~ 71 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVT-VDGDKVATMQVWDTAGQER-----------F 71 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEEC-CSSSCCEEEEEECCC----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEE-EcCCcEEEEEEEECCCChH-----------h
Confidence 34589999999999999999999987643222111 11112222222 22 34789999999443 2
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
.......+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.........+. ..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~ 143 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQ 143 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HH
Confidence 2233445688899999999984433222 3344444443320 12239999999999753310000111 22
Q ss_pred HHHH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 171 EILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+.. ..+..++. +|++++.+++++++++...+.
T Consensus 144 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 144 ELAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 3333 22345555 788889999999999977654
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=8.3e-18 Score=151.75 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|.+|+|||||+|+|+|....... ...+.|...... ...+++..+.+|||||+..... ..+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~-~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQD-TVEWYGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEE-EEEETTEEEEEEECTTTTSSGG--GCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeE-EEEECCeEEEEEECCCcccccc--chHHHHHHHHHHH
Confidence 47999999999999999999988742111 122334333333 3347889999999999875311 1111223333334
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (301)
++..+|++++|+|+..+++..+.....++... +. |+++++||+|.... ..... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~~----p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-TV----DTILVANKAENLRE----FEREV-------KPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-TC----CEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence 56778999999999888888887776766653 32 89999999996421 11111 01222 2332
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++ +||.++.|+.+|++.+...++.
T Consensus 141 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EPIP------VSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SCEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEE------EeccCCCCHHHHHHHHHHhccc
Confidence 3444 8999999999999999888764
No 68
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=135.23 Aligned_cols=163 Identities=20% Similarity=0.186 Sum_probs=101.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe--eCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
....+|+|+|.+|+|||||+|+|++....... ..|.......... .....+.+|||||.......
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------- 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC---------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHHH---------
Confidence 35689999999999999999999987653221 1222222121121 23467899999997664321
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
...++..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+.........+ ...+.
T Consensus 89 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 156 (201)
T 3oes_A 89 --PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPEREVQAVE---------GKKLA 156 (201)
T ss_dssp --CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred --HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccccccCHHH---------HHHHH
Confidence 2234677899999999984332222 2333333332211 123999999999976441111111 23444
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+..++. +|++++.++++++++|...+..
T Consensus 157 ~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 157 ESWGATFME------SSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 555666666 8889999999999999887755
No 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.75 E-value=1.1e-17 Score=132.93 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=80.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++....... ....+.......+. .++ ..+.+|||||.... ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~-----------~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIE-LDGKRIKLQIWDTAGQERF-----------RT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEE-ETTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEE-ECCEEEEEEEEcCCCChhh-----------hh
Confidence 3489999999999999999999976542111 01112222222222 455 57899999995442 22
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV--EKMILGNKCDVNDKRQVSKER---------GEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEEC--CCSCCCSCHHH---------HHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECccCCccCcCCHHH---------HHHHHH
Confidence 23345678899999999985433222 334555554433233 999999999986431111111 234445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+.+++. +|++++.++++++.++...+.
T Consensus 142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 142 DYGIKFME------TSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55666665 788889999999999877654
No 70
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=2.1e-18 Score=155.61 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=98.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
+.+|+|+|++|+|||||+|+|++........ ..+.|.......+. .++..+.+|||||+.++... +.........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~-~~g~~v~liDT~G~~~~~~~---ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLV-VGGIPVQVLDTAGIRETSDQ---VEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEE-ETTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEE-ECCEEEEEEECCccccchhH---HHHHHHHHHh
Confidence 4689999999999999999999865421111 12233332222223 67889999999998764221 1111122233
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
..+..+|++++|+|++++++..+..++..+.. .|+++|+||+|+... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cCC
Confidence 45678999999999998888777666655532 299999999998755 2111 1111 00 123
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.++. +|++++.|+++|++.|.+.+...
T Consensus 359 ~~i~------iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 QIVH------TAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CEEE------EBTTTTBSHHHHHHHHHHHHTTS
T ss_pred cEEE------EECCCCCCHHHHHHHHHHHHhcc
Confidence 3444 78999999999999999887653
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.75 E-value=3.5e-17 Score=130.09 Aligned_cols=162 Identities=20% Similarity=0.164 Sum_probs=100.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
+..+|+|+|++|+|||||+|+|++....... ..|+..........++ ..+.+|||||.... .. ....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~---~~~~ 85 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY----AA---IRDN 85 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC----HH---HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCccc----HH---HHHH
Confidence 4589999999999999999999977642211 1222222221122444 36899999997653 11 1122
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++ ...+..
T Consensus 86 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 151 (187)
T 2a9k_A 86 Y----FRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAE 151 (187)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred H----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHHH
Confidence 2 234599999999984332222 3444555544331 123999999999976431111111 334455
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+.+++. +|++++.++++++++|.+.+..
T Consensus 152 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 152 QWNVNYVE------TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence 55666665 7888899999999999876543
No 72
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=3.2e-17 Score=128.15 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|+|....... ..+.|.......+. .++..+.+|||||......... .+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEE-ECCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 378999999999999999999987643221 11223222222222 5678899999999887543221 111211111
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
. ..++|++++|+|+++ + .....++..+.+. + .|+++|+||+|+... ..+ ......+....+.
T Consensus 78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~--~~~--------~~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-G----ANLLLALNKMDLAKS--LGI--------EIDVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-T----CCEEEEEECHHHHHH--TTC--------CCCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-C----CCEEEEEEchHhccc--cCh--------hhHHHHHHHHhCC
Confidence 0 125799999999983 2 1222344444331 2 299999999996432 110 0113444455566
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
+++. +||+++.+++++++++.+.+
T Consensus 140 ~~~~------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVP------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHh
Confidence 6665 89999999999999987654
No 73
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=6.4e-18 Score=132.06 Aligned_cols=159 Identities=18% Similarity=0.105 Sum_probs=98.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++...........+ ......... .++ ..+.+|||||........
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~--------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG--VDFLERQIQ-VNDEDVRLMLWDTAGQEEFDAIT--------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCS--SSEEEEEEE-ETTEEEEEEEECCTTGGGTTCCC---------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceE--EEEEEEEEE-ECCEEEEEEEEcCCCcHhHHHHH---------
Confidence 357999999999999999999998764222111111 122222222 333 478999999965432211
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|+........++ ...+..
T Consensus 72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (168)
T 1z2a_A 72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAK 137 (168)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 112456799999999984332222 334444544432 2 2999999999976431011111 334445
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..+.+++. .|++++.+++++++++.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHH
Confidence 55666666 78888999999999987665
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.75 E-value=2.4e-18 Score=135.92 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=99.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++....... ....+......... .++ ..+.+|||||...... ....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~-------~~~~- 82 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFRS-------LIPS- 82 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGGG-------GSHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHHH-------HHHH-
Confidence 479999999999999999999976642222 12222222222222 344 4789999999654211 1112
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
++..+|++++|+|++++.+... ..++..+....+... |+++|+||+|+.........+ ...+...
T Consensus 83 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 148 (179)
T 2y8e_A 83 ---YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV--IIMLVGNKTDLSDKRQVSTEE---------GERKAKE 148 (179)
T ss_dssp ---HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred ---HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCcccccCcCCHHH---------HHHHHHH
Confidence 2345699999999984332222 344455554433333 999999999976431111111 2233444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|++++.+++++++++...+.
T Consensus 149 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LNVMFIE------TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 4566665 788889999999999877553
No 75
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.75 E-value=2.1e-16 Score=133.28 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|++|+|||||+|+|+|...+... .++.|.......+. . +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999998653322 22444433332222 2 67899999999987643221 122222111
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
....+|++++|+|+++ . .....+...+.+ .+. |+++++||+|.... .. .......+....+.
T Consensus 77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~~~----p~ilv~NK~Dl~~~--~~--------~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE-TGI----PVTIALNMIDVLDG--QG--------KKINVDKLSYHLGV 138 (272)
T ss_dssp -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-TCS----CEEEEEECHHHHHH--TT--------CCCCHHHHHHHHTS
T ss_pred -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh-cCC----CEEEEEEChhhCCc--CC--------cHHHHHHHHHHcCC
Confidence 1246899999999983 2 112233333333 232 99999999996532 11 11113445555566
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
++++ +||+++.|+++|++.+...+.
T Consensus 139 ~vi~------~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 139 PVVA------TSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHSCT
T ss_pred CEEE------EEccCCCCHHHHHHHHHHHHh
Confidence 6666 889999999999999987654
No 76
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=132.40 Aligned_cols=170 Identities=18% Similarity=0.103 Sum_probs=100.3
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
......+|+|+|++|+|||||+|++++... ... ...|+..........++. .+.+|||||.......
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------- 84 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE---YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL------- 84 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------
Confidence 344568999999999999999999998763 222 122222222222224554 5679999998664321
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC- 165 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~- 165 (301)
...++..+|++++|+|++++.+.... .++..+....+ . .|+++|+||+|+... ......+.. ..
T Consensus 85 ----~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 85 ----RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLRED--VKVLIELDKCKEKPVP 155 (201)
T ss_dssp ----GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGC--HHHHHHHHTTTCCCCC
T ss_pred ----hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhc--hhhhhhhcccccccCC
Confidence 22346788999999999854333332 35555555433 2 399999999998643 111111100 00
Q ss_pred CchHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 166 PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 166 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
......+....+. .++. +|++++.+++++++++...+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 156 EEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence 0112334444454 5555 7888999999999998776543
No 77
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=6e-17 Score=129.42 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|.+|+|||||+|+|++....... ..|+..........++. .+.+|||||.... ...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~ 85 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-----------SAM 85 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHHH-----------HHH
Confidence 479999999999999999999977642211 11222222222224443 5889999995442 122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++..+|++++|+|++++.+..+ ..++..+...... ...|+++|+||+|+.... ...++ ...+...
T Consensus 86 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~ 154 (190)
T 3con_A 86 RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRT-VDTKQ---------AHELAKS 154 (190)
T ss_dssp ----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHHH---------HHHHHHH
T ss_pred HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCccc-CCHHH---------HHHHHHH
Confidence 2334678899999999984433233 3344445444321 123999999999976430 11111 3344455
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+..++. +|++++.+++++++++.+.+...
T Consensus 155 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 155 YGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 5656665 78888999999999998776553
No 78
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.2e-17 Score=133.18 Aligned_cols=162 Identities=15% Similarity=0.063 Sum_probs=97.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|++++.......+ ..+.+ ...+. .++..+.+|||||...... ..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN----VEEIV-INNTRFLMWDIGGQESLRS-----------SW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSS----CEEEE-ETTEEEEEEECCC----CG-----------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-CCccc----eEEEE-ECCEEEEEEECCCCHhHHH-----------HH
Confidence 45899999999999999999999766532221 11111 22223 5678999999999755321 11
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH-HHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI-LQL 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 175 (301)
..++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... +... +..
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~~~~~~~ 149 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-----LKLTSIKD 149 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGCCS
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHHH-----hChhhhcC
Confidence 123467799999999985544333 233333332210 112399999999998654 222221111 0000 011
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +|++++.+++++++++.+.+..
T Consensus 150 ~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 150 HQWHIQA------CCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp SCEEEEE------CBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCcEEEE------ccCCCCcCHHHHHHHHHHHHHH
Confidence 1223343 7889999999999999887754
No 79
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.74 E-value=1.3e-17 Score=136.04 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=102.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
..+|+|+|.+|+|||||+++++.......- .+|.... ..... .++ ..+.||||+|...+..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~----~~Tig~d~~~k~~~-~~~~~v~l~iwDtaGqe~~~~---------- 77 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTY----QATIGIDFLSKTMY-LEDRTIRLQLWDTAGLERFRS---------- 77 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEE-CSSCEEEEEEECCSCTTTCGG----------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCc----CCccceEEEEEEEE-ecceEEEEEEEECCCchhhhh----------
Confidence 479999999999999999999865542221 1222211 11112 333 3678999999665321
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
....++++++++++|+|.+++-+-.. ..++..+....+.++ |++||.||+|+........++ ...+.
T Consensus 78 -l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a 145 (216)
T 4dkx_A 78 -LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKA 145 (216)
T ss_dssp -GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred -HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHH
Confidence 12234678899999999985444433 456666766666555 999999999976431112221 23445
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+..++. +||+++.++++++..|.+.+.
T Consensus 146 ~~~~~~~~e------~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 146 KELNVMFIE------TSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHHTCEEEE------EBTTTTBSHHHHHHHHHHHC-
T ss_pred HHhCCeeEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 555666665 899999999999999877654
No 80
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=2.3e-17 Score=132.69 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=100.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|+|++...........+.+. ......++ ..+.+|||||..... . ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~~l~Dt~G~~~~~----~---~~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY----RQVISCDKSVCTLQITDTTGSHQFP----A---MQRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE----EEEEEETTEEEEEEEEECCGGGSCH----H---HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce----eEEEEECCEEEEEEEEeCCChHHhH----H---HHHH
Confidence 458999999999999999999997664222211112111 11111333 368999999966531 1 1112
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
+ +..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|+.... ....+ ...+..
T Consensus 76 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~ 141 (199)
T 2gf0_A 76 S----ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ 141 (199)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred h----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence 2 334599999999984333222 33455555543321223999999999986431 11111 223344
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.+++++++++...+..
T Consensus 142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 142 EWKCAFME------TSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHHCSS
T ss_pred HhCCeEEE------EecCCCCCHHHHHHHHHHHHhh
Confidence 45556665 7888999999999999887654
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=1.2e-17 Score=130.06 Aligned_cols=160 Identities=11% Similarity=0.013 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|++|+|||||+|++++...... .+|.......+. ..+..+.+|||||.... ......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~-----------~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNISFTVWDVGGQDKI-----------RPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEE-CSSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEE-ECCEEEEEEEcCCChhh-----------HHHHHH
Confidence 3799999999999999999987654221 112222222223 56788999999997541 122233
Q ss_pred cCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... ... ......+.
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~~---~~~~~~~~ 136 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA--MNAAEITDK-LGL---HSLRHRNW 136 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCSSCCE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCeEEEEEECcCCcCC--CCHHHHHHH-hCc---ccccCccE
Confidence 4678899999999985433222 223332222110 012399999999998654 233222221 000 00000111
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+++ .+|++++.+++++++++...+.
T Consensus 137 ~~~------~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 137 YIQ------ATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EEE------ECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEE------EcccCCCcCHHHHHHHHHHHHh
Confidence 233 3788899999999999987654
No 82
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=134.27 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=95.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||.... ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~-----------~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQERF-----------RS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHHHH-----------SC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcHhH-----------HH
Confidence 35799999999999999999999876522221 1112122222222 344 57899999994321 11
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++.+... ..++..+........ |+++|+||+|+.........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI--VVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC--EEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--cEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 11223567799999999984333222 334444544333233 999999999975431111111 233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..++. +|++++.++++++.++.+.+.
T Consensus 159 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFLE------TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 55656665 788889999999999877654
No 83
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=2.5e-17 Score=128.90 Aligned_cols=163 Identities=21% Similarity=0.133 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++........ ...+......... .++ ..+.+|||||...... .+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~~- 70 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQD- 70 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC---------------C-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhhh-
Confidence 3689999999999999999999765422221 1122222222222 344 4678999999765321 0111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
.++..+|++++|+|++++-+... ..++..+...... ...|+++|+||+|+........++ ...+...
T Consensus 71 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (169)
T 3q85_A 71 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE---------GRHLAGT 138 (169)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred --hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHH---------HHHHHHH
Confidence 11234599999999984322222 2344444443221 123999999999976431111111 2344555
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +|++++.+++++++++.+.+..
T Consensus 139 ~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 139 LSCKHIE------TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence 5666666 7888999999999999876643
No 84
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=132.39 Aligned_cols=170 Identities=21% Similarity=0.153 Sum_probs=98.8
Q ss_pred CCCCCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHH
Q 022188 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFV 89 (301)
Q Consensus 12 ~~~~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~ 89 (301)
.+.+.....+|+|+|.+|+|||||+|++++...........+.... ...+. .++. .+.+|||||..... ..
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~i~Dt~g~~~~~---~~- 88 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTY--ERRIM-VDKEEVTLVVYDIWEQGDAG---GW- 88 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEE--EEEEE-ETTEEEEEEEECCCCCSGGG---HH-
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceE--EEEEE-ECCEEEEEEEEecCCCccch---hh-
Confidence 3444456689999999999999999999865432111111111111 11122 4444 56889999975421 11
Q ss_pred HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch
Q 022188 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~ 168 (301)
+.. .++..+|++++|+|++++.+-.. ..++..+...... ...|+++|.||+|+........++
T Consensus 89 ---~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~--------- 152 (195)
T 3cbq_A 89 ---LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE--------- 152 (195)
T ss_dssp ---HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH---------
T ss_pred ---hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH---------
Confidence 111 12345699999999984333222 3344444443221 123999999999986431112221
Q ss_pred HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
...+....+..++. +|++.+.+++++++.+...+..
T Consensus 153 ~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 153 GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHH
Confidence 23344445555655 7888999999999999877654
No 85
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.74 E-value=4.5e-18 Score=139.10 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=103.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|+|++...........+.+.. ........+ ..+.+|||||.........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------- 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH--PVTFLDDQGNVIKFNVWDTAGQEKKAVLKD-------- 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE--EEEEEBTTSCEEEEEEEEECSGGGTSCCCH--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE--EEEEEeCCCcEEEEEEEecCCchhhchHHH--------
Confidence 4589999999999999999999976643222111221111 111221222 5689999999765432211
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..+..+|++++|+|++++.+... ..++..+....+... |+++|+||+|+... ..+.. .....+..
T Consensus 80 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--piilv~nK~Dl~~~--~~~~~-------~~~~~~~~ 145 (218)
T 4djt_A 80 ---VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNR--QKISK-------KLVMEVLK 145 (218)
T ss_dssp ---HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSS--CEEEEEECTTCC------CCH-------HHHHHHTT
T ss_pred ---HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CEEEEEECCCCccc--cccCH-------HHHHHHHH
Confidence 12456799999999985544333 345566665554433 99999999997643 11110 01223334
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
..+..++. +||+++.++++++.++...+....
T Consensus 146 ~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 146 GKNYEYFE------ISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred HcCCcEEE------EecCCCCCHHHHHHHHHHHHhccc
Confidence 44555665 788899999999999998876543
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=1.3e-17 Score=133.23 Aligned_cols=163 Identities=14% Similarity=0.061 Sum_probs=97.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||+|++++....... ..|.......+. ..+..+.+|||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKIT-KGNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEE-eCCEEEEEEECCCCHh-----------HHHHH
Confidence 3579999999999999999999976652211 222222233333 5788999999999433 11222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+... ....+.... ... ......
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~---~~~~~~ 157 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA--LDEKELIEK-MNL---SAIQDR 157 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCCSS
T ss_pred HHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC--CCHHHHHHH-hCh---hhhccC
Confidence 233467899999999984433332 223333322110 112399999999998754 222222221 000 000011
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..++. +|++++.+++++++++.+.+.
T Consensus 158 ~~~~~~------~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 158 EICCYS------ISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CEEEEE------CCTTTCTTHHHHHHHHHHTCC
T ss_pred CeeEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 122333 788899999999999977654
No 87
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=1.5e-17 Score=134.77 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++....... ....+.......+. .++ ..+.+|||||......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~----------- 72 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQS----------- 72 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGSC-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH-----------
Confidence 4589999999999999999999987653221 12222222222222 333 4789999999654321
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc--cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+.... ...++ ...+
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~ 142 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQAW 142 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHHH
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HHHH
Confidence 11234577899999999984433222 2344444443321 0123999999999986330 11111 2223
Q ss_pred HH-HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. ..+..++. +||+++.++++++++|.+.+..
T Consensus 143 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 143 CYSKNNIPYFE------TSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 33 33445555 7888999999999999776543
No 88
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.74 E-value=1.2e-16 Score=124.31 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
.+|+++|++|+|||||+|++++....... ..|...........++ ..+.+|||||...... ....++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH-------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc----CCccceEEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHhh
Confidence 68999999999999999999977642221 1122111111122343 3578999999765321 111222
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..+|++++|+|++++.+... ..++..+...... ...|+++++||+|.... ....+. ...+....
T Consensus 73 ----~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 137 (166)
T 2ce2_X 73 ----RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARSY 137 (166)
T ss_dssp ----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHHH
T ss_pred ----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHHc
Confidence 24599999999984433222 3444555544321 12399999999997653 111111 33444555
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.+++. .|++++.+++++++++...+.
T Consensus 138 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 138 GIPYIE------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 666666 788889999999999987654
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.73 E-value=1.9e-16 Score=125.59 Aligned_cols=163 Identities=22% Similarity=0.161 Sum_probs=100.2
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
..+..+|+|+|++|+|||||+|++++....... ..|...........++. .+.+|||||....... .
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------~ 83 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM-------R 83 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS-------H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH-------H
Confidence 345689999999999999999999976542221 12222222222334554 4567999996553321 1
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
..+ +..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++ ...+
T Consensus 84 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~~---------~~~~ 149 (183)
T 3kkq_A 84 EQY----MRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRDQ---------GKEM 149 (183)
T ss_dssp HHH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHHH---------HHHH
T ss_pred HHH----HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHHH---------HHHH
Confidence 122 234599999999984322222 3344444333221 123899999999976531111111 3345
Q ss_pred HHHcCCceEEecCCCccccc-chhHHHHHHHHHHHHHh
Q 022188 173 LQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~ 209 (301)
....+..++. +|++ ++.+++++++.+.+.+.
T Consensus 150 ~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 150 ATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence 5555666776 7888 88999999999987664
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.73 E-value=1.4e-16 Score=124.16 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|++++....... ..|...........+ ...+.+|||||...... ....+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence 378999999999999999999976542211 122222221112233 34689999999766432 11122
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
+ ..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+........++ ...+...
T Consensus 72 ~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1c1y_A 72 M----KNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp H----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred h----ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 2 34599999999984322222 3344444443221 123999999999986431111111 2334444
Q ss_pred c-CCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
. +..++. +|++++.+++++++++.+.+
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 4 455555 78889999999999987654
No 91
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.73 E-value=1.8e-17 Score=135.48 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--eEEEEeeC-----------CeeEEEEeCCCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSAG 85 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtPG~~~~~~~ 85 (301)
..+|+|+|++|+|||||+|+|++...... ...|.... ...+.... ...+.+|||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 47999999999999999999998664211 11122111 11122111 3578999999932
Q ss_pred cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc--ccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
.+......++..+|++++|+|++++.+... ...++....... ...|+++|+||+|+........+
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~----- 162 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER----- 162 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-----
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-----
Confidence 222333344577899999999984332222 222333322111 22399999999997643101111
Q ss_pred cCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 164 ECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
....+....+..++. +|++++.++++++++|...+.
T Consensus 163 ----~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 ----QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp ----HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 133445555666666 788889999999999877653
No 92
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.73 E-value=4.9e-17 Score=131.33 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=101.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++...........+.. .. .... .++ ..+.+|||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~-~~~~-~~~~~~~l~i~Dt~G~~~~~-----------~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN--YI-ADIE-VDGKQVELALWDTAGQEDYD-----------R 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCC--CE-EEEE-ETTEEEEEEEECCCCSGGGT-----------T
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccce--EE-EEEE-ECCEEEEEEEEECCCchhHH-----------H
Confidence 35799999999999999999999876522211111111 11 1122 344 378999999965421 1
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCC-ch
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~-~~ 168 (301)
....++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|+... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSEE 163 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHHH
Confidence 22335678899999999984332222 345555555432 2 299999999998754 222222211 000 11
Q ss_pred HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+....+. .++. +|++++.+++++++++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 164 GRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 2344445555 4555 78889999999999987654
No 93
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.73 E-value=2.3e-17 Score=133.67 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=100.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
.+..+|+|+|.+|+|||||++++++...... ...|+..........++. .+.+|||||.....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD----------- 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCC----cCCeecceeEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence 3568999999999999999999996554211 122222222222224444 45699999975422
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----C-Cc
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PK 167 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~-~~ 167 (301)
.....++..+|++++|+|++++.+.... .++..+..... . .|+++|+||+|+... ....+.+... . ..
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence 2233456788999999999854443332 35555555432 2 399999999998755 2222221110 0 01
Q ss_pred hHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 168 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
....+....+. .++. +||+++.|++++++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEEE------eeCCCCCCHHHHHHHHHHH
Confidence 12334444454 3555 7889999999999998654
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.73 E-value=1.1e-17 Score=133.61 Aligned_cols=163 Identities=11% Similarity=0.026 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+|+|++|+|||||+|++++.......+ |......... .++..+.+|||||....... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~-----------~ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQ-YKNISFEVWDLGGQTGVRPY-----------W 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEE-ETTEEEEEEEECCSSSSCCC-----------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEE-ECCEEEEEEECCCCHhHHHH-----------H
Confidence 45899999999999999999998766432211 1112222223 56789999999997654321 2
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|+... ...++.... .. . ......
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~~~~~-~~--~-~~~~~~ 156 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA--ASEAEIAEQ-LG--V-SSIMNR 156 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--G-GGCCSS
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC--CCHHHHHHH-hC--h-hhccCC
Confidence 234678899999999985544333 222332222110 012399999999998755 333322221 00 0 000011
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. +|++++.+++++++++.+.+..
T Consensus 157 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 157 TWTIVK------SSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CEEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ceEEEE------ccCCCccCHHHHHHHHHHHHHh
Confidence 122333 7888999999999999887755
No 95
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-17 Score=135.56 Aligned_cols=162 Identities=19% Similarity=0.119 Sum_probs=99.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|+|++......... ..+.......+. .++ ..+.+|||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS--TIGVEFATRTLE-IEGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEE-ECCEEEEEEEEECCCccchhh-----------
Confidence 347999999999999999999998765322211 112222222222 344 4789999999665322
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++|+|+|++++.+... ..++..+........ |+++|+||+|+........++ ...+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~--piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV--AVGLIGNKSDLAHLRAVPTEE---------SKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C--EEEEEECCGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC--eEEEEEECcccccccccCHHH---------HHHHHH
Confidence 12334678899999999985433333 334555554433233 999999999976431011111 233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.+++++++++...+..
T Consensus 147 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 147 ENQLLFTE------TSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HTTCEEEE------CCCC-CCCHHHHHHHHHHHHTT
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 55555655 7888899999999999877654
No 96
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=9e-17 Score=152.18 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=77.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcc-eeeEe-----EEEEe--------------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-KTCEM-----KTTVL-------------------------- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t-~~~~~-----~~~~~-------------------------- 65 (301)
...+|+|+|++|+|||||+|+|+|....+.+..+.... +.... .....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45899999999999999999999998765543222100 00000 00000
Q ss_pred -------------------eCC----eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHH
Q 022188 66 -------------------KDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (301)
Q Consensus 66 -------------------~~~----~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~ 122 (301)
+.. ..+.||||||+.+... .......+.+.+|++|+|+|++.+++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 000 3689999999775321 111222233567999999999878888776
Q ss_pred HHHH-HHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 123 TAVH-RLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 123 ~~l~-~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+. .+.. .+ .|+++|+||+|....
T Consensus 220 ~~l~~~l~~-~~----~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKG-RG----LTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTT-SC----CCEEEEEECGGGGGG
T ss_pred HHHHHHHHh-hC----CCEEEEEECcccccc
Confidence 6554 3322 22 289999999997643
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.73 E-value=5.4e-17 Score=128.95 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=102.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||++++++........ .|+..........++. .+.+|||||..... ..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 69 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RL 69 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-----------TT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcC----CcccceeEEEEEECCEEEEEEEEECCCCHhHH-----------HH
Confidence 4799999999999999999999765422211 1111111111223444 56799999975432 12
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cCC-chH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KPL 169 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~~-~~l 169 (301)
...++..+|++++|+|++++.+.... .++..+....+ . .|+++|+||+|+... ....+.+.. ... ...
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-C--CCEEEEeEccccccc--chhhhhhcccccccCCHHHH
Confidence 23346788999999999854333332 35556655433 2 399999999997654 222221110 000 112
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+....+. +++. +||+++.+++++++++...+..
T Consensus 145 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence 334444554 5565 8888999999999999887754
No 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.3e-17 Score=132.23 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|+|||||+|+|++...........+ .......+. .+ ...+.+|||||....... .
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~-------~--- 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG--VDFKVKTIS-VDGNKAKLAIWDTAGQERFRTL-------T--- 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEE-ETTEEEEEEEEEECSSGGGCCS-------H---
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc--eEEEEEEEE-ECCeEEEEEEEeCCCchhhhhh-------h---
Confidence 47999999999999999999998764322211112 222122222 23 357899999996653221 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
..++..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+.... ...++ ...+...
T Consensus 82 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~ 149 (195)
T 1x3s_A 82 -PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRNE---------GLKFARK 149 (195)
T ss_dssp -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHHH---------HHHHHHH
T ss_pred -HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHHH---------HHHHHHH
Confidence 122456799999999984432222 234444443321 1223999999999975330 11111 2334445
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+..++. +|++++.+++++++++.+.+..
T Consensus 150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence 5656665 7888899999999999887764
No 99
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=1.4e-17 Score=132.14 Aligned_cols=159 Identities=15% Similarity=0.053 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|++++........ ..+.+. ..+. .++..+.+|||||..... ...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~----~~~~-~~~~~~~i~Dt~G~~~~~-----------~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV----EEIV-INNTRFLMWDIGGQESLR-----------SSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSSC----EEEE-ETTEEEEEEEESSSGGGT-----------CGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCceee----EEEE-ECCEEEEEEECCCCHhHH-----------HHH
Confidence 46899999999999999999999877522111 122221 2222 467899999999975422 122
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ...++.... .. +. .....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~ 155 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQF-LK--LT-SIKDH 155 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCSS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC--CCHHHHHHH-hC--cc-cccCC
Confidence 344678899999999986544443 233333332210 112399999999998654 222222111 00 00 00111
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+..++. +|++++.++++++++|.+
T Consensus 156 ~~~~~~------~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 156 QWHIQA------CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CEEEEE------CBTTTTBTHHHHHHHHHT
T ss_pred ceEEEE------ccCCCCcCHHHHHHHHHh
Confidence 223343 788899999999998854
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=6.4e-17 Score=131.83 Aligned_cols=118 Identities=17% Similarity=0.176 Sum_probs=71.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
...+|+|+|++|+|||||++++++....... ..+. .....+. .+ +..+.+|||||.... ...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~----~~~~-~~~~~~~-~~~~~~~~~~i~Dt~G~~~~-------~~~-- 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ----TSIT-DSSAIYK-VNNNRGNSLTLIDLPGHESL-------RFQ-- 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC----CCCS-CEEEEEE-CSSTTCCEEEEEECCCCHHH-------HHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc----CCcc-eeeEEEE-ecCCCccEEEEEECCCChhH-------HHH--
Confidence 4589999999999999999999977642222 1111 1222233 33 568999999995431 111
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhh----CccccCeEEEEEeCCCCCCC
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~nk~D~~~~ 152 (301)
....+++++|++++|+|+++ +..........+...+ ......|+++|+||+|+...
T Consensus 71 -~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 71 -LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp -HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred -HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 22233667899999999983 3222222333333221 11112399999999998765
No 101
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.1e-16 Score=127.55 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=104.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH-H
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK-C 96 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-~ 96 (301)
...+|+|+|++|+|||||+|+|++...+.... .+.|.......+. .++..+.+|||||......... .+.+.. +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEE-eCCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 45799999999999999999999876433322 2333333333333 5678999999999887543211 111111 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
+. ...++++++|+|.. .+ .....++..+.. .. .|+++++||+|.... .. .......+...+
T Consensus 81 ~~--~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~~--~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~~ 141 (188)
T 2wjg_A 81 II--NEKPDLVVNIVDAT-AL-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LG--------IEIDVDKLEKIL 141 (188)
T ss_dssp HH--HHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---TT--CCEEEEEECHHHHHH--TT--------CCCCHHHHHHHH
T ss_pred Hh--ccCCCEEEEEecch-hH-HHHHHHHHHHHh---cC--CCEEEEEEhhhcccc--cc--------chHHHHHHHHHh
Confidence 11 12469999999997 22 122333333332 22 289999999996432 11 111245555556
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+..++. +|++.+.+++++++++...+...
T Consensus 142 ~~~~~~------~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 142 GVKVVP------LSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp TSCEEE------CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CCCeEE------EEecCCCCHHHHHHHHHHHHHhc
Confidence 666666 78889999999999998887653
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=5.8e-17 Score=127.93 Aligned_cols=164 Identities=17% Similarity=0.079 Sum_probs=99.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
...+|+|+|++|+|||||+|++++...........+. ......+. .++ ..+.+|||||....... ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL--DFFLRRIT-LPGNLNVTLQIWDIGGQTIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTS--SEEEEEEE-ETTTEEEEEEEEECTTCCTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeE--EEEEEEEE-eCCCCEEEEEEEECCCCccccch-------hh
Confidence 4589999999999999999999976642211111111 12222222 333 68899999997654321 11
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
. ++..+|++++|+|++++.+... ..++..+..........| +++|+||+|+........++ ...+
T Consensus 75 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~ 141 (178)
T 2hxs_A 75 K----YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HLRF 141 (178)
T ss_dssp H----HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HHHH
T ss_pred H----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HHHH
Confidence 1 2456799999999984433222 234444444321100124 88999999976431011111 2334
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+..++. +|++++.+++++++++...+..
T Consensus 142 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 142 CQENGFSSHF------VSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 4445656665 7888899999999999887654
No 103
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=5.7e-17 Score=140.11 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=98.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CC-C---cceee---------------------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SS-G---VTKTC--------------------------------- 58 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~-~---~t~~~--------------------------------- 58 (301)
..++|+|+|++|+|||||+|+|+|...++.+.. .. + .++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457899999999999999999999886444321 11 1 11110
Q ss_pred ------------------EeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecC-CCC
Q 022188 59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF 117 (301)
Q Consensus 59 ------------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~ 117 (301)
....+....+..+.+|||||+.+.... ...+...+......+...+|++++|++++ ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000012124568999999999752210 01112223333334455779999999974 444
Q ss_pred CHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccc---
Q 022188 118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG--- 193 (301)
Q Consensus 118 ~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 193 (301)
...+ ...+..+.. .+ .|+++|+||+|..... ....+++.. .+..++..++++.+ .++.+
T Consensus 183 ~~~~~~~i~~~~~~-~~----~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-EG----KRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVIN---RSQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-SC----SSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCC---CCHHHHSS
T ss_pred hhhHHHHHHHHhCC-CC----CcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEec---CChhhhcc
Confidence 4333 344444432 12 3999999999987551 112222221 00111233444333 44444
Q ss_pred hhHHHHHHHHHHHHHhh
Q 022188 194 TEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 194 ~~~~~~L~~~l~~~~~~ 210 (301)
+.++.++++.+...++.
T Consensus 246 ~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 67899999999888876
No 104
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=8.6e-17 Score=145.13 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHH----HH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVG----KE 92 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~----~~ 92 (301)
...+|+|+|++|+|||||+|+|+|...... +..+.|+.........+++..+.+|||||+....... +... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v--~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE--CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc--CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999999875222 2222233322222233678899999999985422111 0000 00
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
.... +..+|++++|+|+..+.+..+......+.. .+. |+++++||+|.........+++... +...
T Consensus 257 ~~~~----i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 322 (439)
T 1mky_A 257 VVDS----IEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREK 322 (439)
T ss_dssp HHHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred HHHH----HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence 1122 234599999999987777776655555543 233 8999999999875421223333222 2222
Q ss_pred HHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188 173 LQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (301)
Q Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 213 (301)
+... +.+++. +||+++.++++|++.+...+.....
T Consensus 323 ~~~~~~~~~~~------~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 323 LYFIDYSPLIF------TSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp CGGGTTSCEEE------CBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred hccCCCCcEEE------EECCCCCCHHHHHHHHHHHHHhhcc
Confidence 2212 234454 8999999999999999888766543
No 105
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.2e-16 Score=128.23 Aligned_cols=165 Identities=18% Similarity=0.061 Sum_probs=101.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++.... .. ...|+..........++ ..+.+|||||......
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------- 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EE---YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------- 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CS---CCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CC---CCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-----------
Confidence 3479999999999999999999977542 11 11122111111122344 5788999999766421
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-Cch
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~ 168 (301)
....++..+|++++|+|++++.+-... .++..+....+ . .|+++|+||+|+... ....+.+.. .. ...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence 123356788999999999844332222 45556655433 2 399999999998754 222111110 00 011
Q ss_pred HHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
...+....+. .++. +|++++.+++++++++.+.+
T Consensus 157 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 157 GQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 2334444454 5555 78889999999999987654
No 106
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=6.5e-17 Score=129.73 Aligned_cols=165 Identities=10% Similarity=0.025 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEeEEEE--ee--CCeeEEEEeCCCCCCCCCCcH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV--LK--DGQVVNVIDTPGLFDLSAGSE 87 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~~~t~~~~~~~~~--~~--~~~~~~liDtPG~~~~~~~~~ 87 (301)
...+|+|+|++|+|||||++.+.|......... ....|......... .. ....+.+|||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 458999999999999999999987654221110 01122221111100 11 23468999999976532
Q ss_pred HHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHH----HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH----RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~----~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
.....+++.+|++++|+|++.+........+. ++.+.-......|+++|+||+|+... ...++
T Consensus 89 -------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~---- 155 (198)
T 3t1o_A 89 -------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM---- 155 (198)
T ss_dssp -------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH----
T ss_pred -------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH----
Confidence 11122467789999999998443333333333 33332111122399999999998654 22222
Q ss_pred cCCchHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 164 ECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 164 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..+....+. .++. +||+++.+++++++++...+..
T Consensus 156 -----~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 156 -----VRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -----HHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence 3344444555 5665 8999999999999999876543
No 107
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=6e-16 Score=135.91 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=108.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCc-HHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK 95 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~~~ 95 (301)
....+|+++|++|+|||||+|+|++....... ....|......... ..+..+.+|||||+.+..... ..+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~--- 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIEKQ--- 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHHHH---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHHHH---
Confidence 34579999999999999999999998742221 12333333333333 467789999999987643321 111111
Q ss_pred HHhccCCCccEEEEEEecCCCC--CHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
.+......+|++++|+|++++. +... ..++..+...++ + .|+++|+||+|.... ..+++ ....
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~--~piilV~NK~Dl~~~--~~~~~---------~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-D--LPFLVVINKIDVADE--ENIKR---------LEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-T--SCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-C--CCEEEEEECcccCCh--HHHHH---------HHHH
Confidence 2222344679999999987432 4443 556666666553 2 399999999997654 22322 2223
Q ss_pred HHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+.+++. +||+++.|+++|++++...+..
T Consensus 305 ~~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 305 VKEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 3344555555 7888999999999999877643
No 108
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.72 E-value=6.4e-17 Score=130.97 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCccee--eEeEEEEeeC----CeeEEEEeCCCCCCCCCCcHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEFV 89 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~liDtPG~~~~~~~~~~~ 89 (301)
...+|+|+|++|+|||||+|++++. ... . ....|+. .....+. .+ ...+.+|||||...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~---~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~-------- 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFL-K---DYAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSDL-------- 85 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTHH--------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCccc-C---CCCCccceEEEEEEEE-ECCcccEEEEEEEECCCcHH--------
Confidence 3479999999999999999999987 321 1 1122222 1222223 34 34789999999532
Q ss_pred HHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhC---ccccCeEEEEEeCCCCCC-CccccHHHHhccc
Q 022188 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG---KNVFDYMIVVFTGGDDLE-DHEKTLEDFLGHE 164 (301)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~---~~~~~~~ilv~nk~D~~~-~~~~~~~~~~~~~ 164 (301)
+......++..+|++++|+|++++.+... ..++..+....+ .. .|+++|+||+|+.. ......+
T Consensus 86 ---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~--~piilv~nK~Dl~~~~~~v~~~------ 154 (208)
T 2yc2_C 86 ---YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERP--LRAVLVANKTDLPPQRHQVRLD------ 154 (208)
T ss_dssp ---HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC--CEEEEEEECC-------CCCHH------
T ss_pred ---HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccC--CcEEEEEECcccchhhccCCHH------
Confidence 33344556788999999999985433233 345555555433 23 39999999999865 2101111
Q ss_pred CCchHHHHHHHcCCceEEecCCCcccccc-hhHHHHHHHHHHHHHh
Q 022188 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV 209 (301)
Q Consensus 165 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~~~~ 209 (301)
....+....+..++. +|+++ +.+++++++++...+.
T Consensus 155 ---~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 ---MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp ---HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence 134455556666665 78888 8999999999877654
No 109
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.3e-17 Score=130.91 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||+|++++.......+ ..+. ....+. .++..+.+|||||...... ..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~~----~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~~ 79 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGF----NVETLS-YKNLKLNVWDLGGQTSIRP-----------YW 79 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STTC----CEEEEE-ETTEEEEEEEEC----CCT-----------TG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCcc----ceEEEE-ECCEEEEEEECCCCHhHHH-----------HH
Confidence 45899999999999999999999766522221 1121 112222 5678999999999765322 12
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ...++.... .. .. .....
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~-~~~~~ 152 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA--LSASEVSKE-LN--LV-ELKDR 152 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC--CCHHHHHHH-TT--TT-TCCSS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC--CCHHHHHHH-hC--cc-cccCC
Confidence 334678899999999985544333 233333322210 122399999999998654 222222111 00 00 00001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+..++. +|++++.+++++++++.+.+..
T Consensus 153 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 153 SWSIVA------SSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CEEEEE------EBGGGTBTHHHHHHHHHHHHHH
T ss_pred ceEEEE------ccCCCCcCHHHHHHHHHHHHHh
Confidence 112333 7899999999999999877643
No 110
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=1.3e-17 Score=150.47 Aligned_cols=161 Identities=17% Similarity=0.103 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|++|+|||||+|+|+|....... ...+.|....... ..+.+..+.+|||||+...... +.+.+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~-~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEE-CTTCSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCCccceEEEE-EEECCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 67999999999999999999987652211 1223343333333 3367788999999998642211 23344444444
Q ss_pred cCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-
Q 022188 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 178 (301)
++..+|++++|+|+..+++..+..+...+... + .|+++++||+|.... . ..... +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~-~----~pvilv~NK~D~~~~--~---~~~~~--------~~-~lg~~ 139 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD--------FY-SLGFG 139 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC-C----SCEEEEEECCCC----------CCCS--------SG-GGSSC
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCccc--h---hhHHH--------HH-HcCCC
Confidence 45677999999999988888877666666532 2 399999999997643 1 00111 11 1121
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+++ +||.++.|+.+|++++...++.
T Consensus 140 ~~~~------iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 EPYP------ISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CCEE------CBTTTTBTHHHHHHHHHHTGGG
T ss_pred CeEE------EeCcCCCChHHHHHHHHHhcCc
Confidence 3333 7999999999999999887764
No 111
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=129.84 Aligned_cols=166 Identities=19% Similarity=0.136 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|.+|+|||||+|++++....... ..|+..........++ ..+.+|||||...... .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 89 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-----------L 89 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-----------T
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-----------H
Confidence 469999999999999999999987652221 1111111111122344 4689999999765421 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc----CC-chH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CP-KPL 169 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~----~~-~~l 169 (301)
...++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|+... ....+.+... .. ...
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHHH
Confidence 2234678899999999984322222 345555555432 2 299999999998654 2222222110 00 012
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+....+. .++. +|++++.|+++|+++|.+.+..
T Consensus 165 ~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 165 RAMAVRIQAYDYLE------CSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCEEEE------eeCCCCCCHHHHHHHHHHHHHH
Confidence 233444444 4555 7888999999999999877643
No 112
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.71 E-value=2.6e-16 Score=142.56 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc-ceeeEeEEEEeeCCeeEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFV-GKEIVKC 96 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~ 96 (301)
.+|+|+|.+|+|||||+|+|++..... ....+. |.......+. .++..+.+|||||+. .+....+.. .+.....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~--vs~~~gTT~d~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAI--VTDIPGTTRDVISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCC--CCCSSCCSSCSCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCc--cCCCCCeeeeeEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 689999999999999999999876421 222233 3333223333 678899999999987 543211110 0111222
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
+ ..+|++|+|+|++++.+..+...++.+ . . .|+++|+||+|+... ...++ +..+.. .
T Consensus 321 ~----~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~ 377 (482)
T 1xzp_A 321 I----EKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-T 377 (482)
T ss_dssp H----HHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-C
T ss_pred h----hcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-C
Confidence 2 345999999999877777665554433 2 2 299999999998643 22221 222221 1
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.+++. +|++++.|+++|+++|...+.
T Consensus 378 ~~~~i~------iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 DRHMVK------ISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp STTEEE------EEGGGTCCHHHHHHHHHHHTH
T ss_pred CCcEEE------EECCCCCCHHHHHHHHHHHHh
Confidence 234554 899999999999999987643
No 113
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.71 E-value=2.4e-16 Score=125.49 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=99.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
+.....+|+|+|.+|+|||||+|++++....... ..|...... ....++. .+.+|||||.... .
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~---------~ 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKK-EIVVDGQSYLLLIRDEGGPPEL---------Q 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEE-EEEETTEEEEEEEEECSSSCCH---------H
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEE-EEEECCEEEEEEEEECCCChhh---------h
Confidence 3345689999999999999999999876642211 112211112 2224554 5677999997652 1
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
++ ..+|++++|+|++++.+... ..++..+..... ....|++++.||+|+.......+. ......
T Consensus 82 ---~~----~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~~ 146 (184)
T 3ihw_A 82 ---FA----AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVID-------DSRARK 146 (184)
T ss_dssp ---HH----HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSC-------HHHHHH
T ss_pred ---ee----cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccC-------HHHHHH
Confidence 22 34599999999985443333 344455544321 122399999999997422001110 011334
Q ss_pred HHHHcC-CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+....+ ..++. +||+++.+++++++++...+..
T Consensus 147 ~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 147 LSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 555555 45555 7888999999999999876544
No 114
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=3.1e-16 Score=125.97 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=98.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
....+|+|+|.+|+|||||+|++++........ .|...........++ ..+.+|||||... . . ...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~-~---~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED----T-I---QRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC----C-H---HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc----c-c---chh
Confidence 356899999999999999999999876422211 121111111122343 4689999999776 1 1 122
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.++ ..+|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|+........++ ...+.
T Consensus 94 ~~~----~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 159 (196)
T 2atv_A 94 GHM----RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE---------GEKLA 159 (196)
T ss_dssp HHH----HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred hhh----ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence 222 34499999999984333222 3344555543221 123999999999976431111111 23344
Q ss_pred HHcCCceEEecCCCcccccchh-HHHHHHHHHHHHHhh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~ 210 (301)
...+..++. +|++++. +++++++++...+..
T Consensus 160 ~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 160 TELACAFYE------CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence 444556665 7888888 999999999776543
No 115
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=2.4e-16 Score=143.40 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc---c-c-cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF---K-A-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~---~-~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
..+|+++|+.++|||||+|+|++.... . . .....+.|.......+. .++..+.+|||||..+ +
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh~~-----------~ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHAD-----------L 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHHH-----------H
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCChHH-----------H
Confidence 479999999999999999999987611 0 0 01122345444444333 5778999999999422 3
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
...+...+..+|++++|+|++++......+.+..+.. ++. |.++++||+|+... ..++....+ +..++
T Consensus 87 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~l 154 (482)
T 1wb1_A 87 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 154 (482)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHHH
Confidence 3333344567899999999997777887777776654 343 78999999998754 344444443 55555
Q ss_pred HHc----CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLC----DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
... ..++++ .||.++.++++|++.|...++
T Consensus 155 ~~~~~~~~~~ii~------vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 155 QSTHNLKNSSIIP------ISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHSSSGGGCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhcccccceEEE------EECcCCCCHHHHHHHHHHhhc
Confidence 544 234454 788889999999999998765
No 116
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.71 E-value=1.9e-16 Score=129.26 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=103.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++....... ..|...........+ ...+.+|||||..... .
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 90 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPYYD-----------N 90 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-----------T
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-----------H
Confidence 4689999999999999999999977642211 122222211111122 3478999999965421 2
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh-c----ccCCch
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-G----HECPKP 168 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~-~----~~~~~~ 168 (301)
....++..+|++++|+|++++.+... ..++..+..... .. |+++|.||+|+... ......+ . .-....
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~--piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 165 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-ST--RVLLIGCKTDLRTD--LSTLMELSHQKQAPISYEQ 165 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TS--EEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CC--CEEEEEEChhhccc--hhhhhhhcccccCccCHHH
Confidence 23345778899999999995444333 345566665533 23 99999999997643 1000000 0 000111
Q ss_pred HHHHHHHcCC-ceEEecCCCcccccchhH-HHHHHHHHHHHHhh
Q 022188 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ 210 (301)
Q Consensus 169 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~ 210 (301)
...+....+. .++. +||+++.+ ++++++.+...+..
T Consensus 166 ~~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 166 GCAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhc
Confidence 3345555566 6666 88889998 99999999877654
No 117
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=126.10 Aligned_cols=161 Identities=19% Similarity=0.099 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++.... .. ...|...........++ ..+.+|||||...... +..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHH
Confidence 4589999999999999999999977642 11 12222222111122343 4678999999765432 111
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
++..+|++++|+|++++-+-.. ..++..+...... ....|+++|+||+|+........++ ...+.
T Consensus 88 ----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 154 (187)
T 3c5c_A 88 ----YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVALA 154 (187)
T ss_dssp ----HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHHHH
T ss_pred ----HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHHHH
Confidence 2356799999999984333332 2344555443210 0123999999999975431011111 23344
Q ss_pred HHcCCceEEecCCCcccc-cchhHHHHHHHHHHHHHh
Q 022188 174 QLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~ 209 (301)
...+..++. +|+ +++.+++++++.+.+.+.
T Consensus 155 ~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 155 GRFGCLFFE------VSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHTCEEEE------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEE------EeecCccccHHHHHHHHHHHHh
Confidence 555666665 788 789999999999877653
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=1.9e-16 Score=127.30 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=96.9
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
+.....+|+|+|.+|+|||||+|.+++........ ....+...............+.+|||||.......... ..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----~~ 90 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----YE 90 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----HH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----cc
Confidence 33456899999999999999999999864322111 11112221111111123468899999997664321100 01
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
. ++.++|++++|+|+++++......+..++.+........|+++|.||+|+... ....+....-.......+..
T Consensus 91 ~----~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 91 M----IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp H----HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred c----ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHHHHHHHHH
Confidence 2 23456999999999966434444555555554111112399999999997653 11100000000000122333
Q ss_pred ----HcCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 175 ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 175 ----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
..+..++. +||++ .++.+++..+.+.
T Consensus 165 ~~~~~~~~~~~e------~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 165 AGLEKLHLSFYL------TSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTCTTSCEEEEE------ECTTS-THHHHHHHHHHHH
T ss_pred hhhhcCCcceEE------EEech-hhHHHHHHHHHHH
Confidence 23334444 78888 9999999988654
No 119
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.70 E-value=8.7e-17 Score=127.69 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|++|+|||||++++++....... .|.......+. .++..+.+|||||.... ....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~-~~~~~l~i~Dt~G~~~~-----------~~~~ 77 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQ-SQGFKLNVWDIGGQRKI-----------RPYW 77 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECSSCGGG-----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEE-ECCEEEEEEECCCCHHH-----------HHHH
Confidence 4589999999999999999999987542111 11111122223 56788999999996542 1122
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++-+-.. ..++..+..... ....|++++.||+|+... ...++.... .. +. .....
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~--~~-~~~~~ 150 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA--APASEIAEG-LN--LH-TIRDR 150 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TT--GG-GCCSS
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC--CCHHHHHHH-hC--ch-hccCC
Confidence 234567899999999985433333 223332222111 112399999999998755 333222111 00 00 00001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+..++. +||+++.|++++++++...+.
T Consensus 151 ~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 151 VWQIQS------CSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CEEEEE------CCTTTCTTHHHHHHHHHHTC-
T ss_pred ceEEEE------ccCCCCCCHHHHHHHHHHHHH
Confidence 122333 788999999999999976553
No 120
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.70 E-value=9.8e-18 Score=149.36 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=104.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
....++|+|+|++|+|||||+|+|++....... ...+.|...............+.+|||||+.++........+....
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 345689999999999999999999987752222 1233444444444442333489999999998765432211112222
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
++..+|++++|+|+ .....+..++..+.+. + . |+++|+||+|.... ... +. ...+...
T Consensus 110 ----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~--~--piIvV~NK~Dl~~~--~~~-~~--------~~~l~~~ 167 (423)
T 3qq5_A 110 ----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E--I--PFVVVVNKIDVLGE--KAE-EL--------KGLYESR 167 (423)
T ss_dssp ----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T--C--CEEEECCCCTTTTC--CCT-HH--------HHHSSCC
T ss_pred ----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C--C--CEEEEEeCcCCCCc--cHH-HH--------HHHHHHH
Confidence 34567999999998 4667777788887765 2 2 99999999998765 221 11 1112222
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.+.++ ...|++++.+++++++.|.+.++.
T Consensus 168 ~g~~v------~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 168 YEAKV------LLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTCCC------CCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred cCCCE------EEEECCCCCCHHHHHHHHHHhhhh
Confidence 23333 348899999999999999998854
No 121
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=8.9e-18 Score=137.71 Aligned_cols=162 Identities=16% Similarity=0.063 Sum_probs=100.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|+++............+.+......... ..+..+.+|||||........
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~----------- 81 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLR----------- 81 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHH-----------
Confidence 45899999999999999999944322111111222223322222111 234578999999965433211
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++++|+|++++.+... ..++..+..... . .|+++|+||+|+... .... . ...+....
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~--------~~~~~~~~ 147 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-K--------SIVFHRKK 147 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-G--------GCCHHHHH
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-H--------HHHHHHHc
Confidence 112456799999999985433332 345555555433 2 299999999998654 1111 1 12233444
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
+..++. +|++++.++++++.++...+...
T Consensus 148 ~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 148 NLQYYD------ISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TCEEEE------CBGGGTBTTTHHHHHHHHHHHTC
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHHHhC
Confidence 666666 78999999999999998877543
No 122
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.70 E-value=3e-16 Score=124.76 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++....... ..|...........+ ...+.+|||||..... .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 4589999999999999999999976542111 112211111111123 3478999999965421 1
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---cCC-chH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~~~-~~l 169 (301)
....++..+|++++|+|++++.+... ..++..+....+ . .|+++|.||+|+.... ....+.... ... ...
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 146 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 146 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence 12335678899999999985433333 234455555433 2 3999999999976431 111111100 000 113
Q ss_pred HHHHHHcC-CceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 022188 170 KEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (301)
Q Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~ 208 (301)
..+....+ ..++. +||+ .+.+++++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 147 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence 34444445 35555 7887 6899999999987654
No 123
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.70 E-value=2e-16 Score=126.81 Aligned_cols=163 Identities=10% Similarity=0.022 Sum_probs=93.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+..+|+|+|++|+|||||+|++++...... .+|.......+. ..+..+.+|||||...... ....
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~~~~- 92 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVE-YKNICFTVWDVGGQDKIRP-------LWRH- 92 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEE-ETTEEEEEEECC-----CT-------THHH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEE-ECCEEEEEEECCCCHhHHH-------HHHH-
Confidence 3468999999999999999999987664221 112222222233 5778999999999765322 1111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|+... ...++.... ... .....
T Consensus 93 ---~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~-~~~---~~~~~ 162 (192)
T 2b6h_A 93 ---YFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA--MPVSELTDK-LGL---QHLRS 162 (192)
T ss_dssp ---HHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC--CCHHHHHHH-TTG---GGCSS
T ss_pred ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC--CCHHHHHHH-hCc---ccccC
Confidence 2346699999999985433332 223332222110 012399999999998654 233322221 000 00001
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++ .+|++++.+++++++++.+.+.
T Consensus 163 ~~~~~~------~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQ------ATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEE------ECBTTTTBTHHHHHHHHHHHTT
T ss_pred CceEEE------ECcCCCcCCHHHHHHHHHHHHh
Confidence 111233 3788899999999999977653
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=7.6e-17 Score=129.06 Aligned_cols=163 Identities=7% Similarity=-0.029 Sum_probs=94.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
.+..+|+++|++|+|||||+|++++...... ..|.......+. .++..+.+|||||...... .
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-----------~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELA-IGNIKFTTFDLGGHIQARR-----------L 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEE-ETTEEEEEEECCCSGGGTT-----------S
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEE-ECCEEEEEEECCCCHHHHH-----------H
Confidence 3457999999999999999999997664221 112222222233 5678999999999765321 1
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCch---HHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP---LKEI 172 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~---l~~~ 172 (301)
...++..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ...++.... .... -...
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~~~~~~~~~ 159 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNA--VSEAELRSA-LGLLNTTGSQR 159 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC--CCHHHHHHH-TTCSSCCC---
T ss_pred HHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCC--CCHHHHHHH-hCCcccccccc
Confidence 2334678899999999985443333 233333322111 112399999999998653 222222111 0000 0000
Q ss_pred H-HHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 173 L-QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 173 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
+ ...+.+++. +|++++.|++++++++.+
T Consensus 160 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 160 IEGQRPVEVFM------CSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CCSSCCEEEEE------CBTTTTBSHHHHHHHHHT
T ss_pred ccccceEEEEE------eECCcCCCHHHHHHHHHh
Confidence 0 001122333 789999999999998854
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=1.4e-17 Score=150.99 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+|+|.+|+|||||+|+|+|...... ....+.|....... ..+.+..+.+|||||+...... +.+++.....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~-~~~~~~~~~liDT~G~~~~~~~---~~~~~~~~~~ 97 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGDEP---FLAQIRQQAE 97 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEE-CTTCSSCCEEECCCC------C---CHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEE-EEECCceEEEEECCCCCCcchH---HHHHHHHHHH
Confidence 46899999999999999999998765211 12234444433333 3367789999999998743221 2234444444
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
.++..+|++|+|+|+..+++..+..+++.+... + .|+++++||+|.... . ..... + +. ..+ .
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-~----~pvilV~NK~D~~~~--~---~~~~e-~---~~---lg~-~ 159 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD-F---YS---LGF-G 159 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-C----SCEEEEEECC--------------CC-S---GG---GSS-S
T ss_pred hhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-C----CCEEEEEECccchhh--h---hhHHH-H---HH---cCC-C
Confidence 455667999999999888999888877777652 2 399999999997533 1 11111 0 00 111 1
Q ss_pred ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+ ..||..+.++.+|++.+...++
T Consensus 160 ~~~------~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EPY------PISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SEE------ECCTTTCTTHHHHHHHHHTTGG
T ss_pred ceE------EeecccccchHHHHHHHHhhcc
Confidence 223 3788889999999999877665
No 126
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=4.1e-17 Score=129.26 Aligned_cols=165 Identities=18% Similarity=0.088 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC--CeeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||+|++++...... ...|+..........+ ...+.+|||||......
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD----YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR----------- 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTT-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-----------
Confidence 458999999999999999999997653211 1112111111001122 33567999999765321
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHh---cccCCchHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL---GHECPKPLK 170 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~---~~~~~~~l~ 170 (301)
....++..+|++++|+|++++.+.... .++..+....+ . .|+++|+||+|+... ....... ..-......
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 123346778999999999844333332 35555655433 2 399999999997644 2110000 000001123
Q ss_pred HHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+....+. .++. +||+++.+++++++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44444554 5555 88899999999999997765
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=9.1e-17 Score=130.71 Aligned_cols=167 Identities=19% Similarity=0.117 Sum_probs=102.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|++|+|||||++++++....... ..|...........++ ..+.+|||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR----------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-----------
Confidence 4589999999999999999999976542111 1121111111111333 4789999999866432
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-CCchHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CPKPLKEI 172 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-~~~~l~~~ 172 (301)
....++..+|++++|+|++++.+.... .++..+....+ . .|+++|+||+|+... ..+....... .......+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHH
Confidence 112346788999999999844333332 45555555433 2 399999999997644 1110000000 00112344
Q ss_pred HHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 173 LQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+. .++. +|++++.+++++++++...+..
T Consensus 148 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 148 RKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhh
Confidence 455554 5665 7888999999999999887754
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.69 E-value=6.8e-17 Score=130.23 Aligned_cols=155 Identities=11% Similarity=0.040 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
+..+|+++|++|+|||||+|++++....... ...+.+ ...+. .++..+.+|||||...... ..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~ 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT----SEELT-IAGMTFTTFDLGGHIQARR-----------VW 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEEEE-ETTEEEEEEEECC----CC-----------GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCce----eEEEE-ECCEEEEEEECCCcHhhHH-----------HH
Confidence 4579999999999999999999987642211 111222 12223 5678999999999654321 12
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL- 175 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~- 175 (301)
..+++.+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+... ...++. ...+..
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~ 154 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDET-IANVPILILGNKIDRPEA--ISEERL---------REMFGLY 154 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTSCEEEEEECTTSTTC--CCHHHH---------HHHHTCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEEECCCcccc--CCHHHH---------HHHhCcc
Confidence 234567899999999985433332 233333322110 112399999999998643 222221 111110
Q ss_pred ----------------cCCceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 176 ----------------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 176 ----------------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
.+..++. +||+++.|++++++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 155 GQTTGKGSVSLKELNARPLEVFM------CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTCCCSSCCCTTTCCSCCEEEEE------CBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccccccCceEEEEE------EECCCCCCHHHHHHHHHHh
Confidence 1122333 7899999999999998643
No 129
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.69 E-value=1e-18 Score=140.95 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=93.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|+|++........ ...+.......+. .++ ..+.+|||||.......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHHH----------
Confidence 35899999999999999999999866522211 1112222222222 444 46899999996653321
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
...++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+... ..+. ......+..
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~-------~~~~~~~~~ 166 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVD-------YTTAKEFAD 166 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCC-------SCC-CHHHH
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCC-------HHHHHHHHH
Confidence 1234577899999999985443333 33444444433222 399999999997643 1110 011233444
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..++ .+|++++.++++++++|.+.+.
T Consensus 167 ~~~~~~~------~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLGIPFL------ETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTTCCBC------CCCC---HHHHHHHHHHTTTTT
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 4454443 3788999999999999876553
No 130
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=1.9e-16 Score=126.30 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|++|+|||||+|++++... .... ..+.|...... . .. .+.+|||||+......+....+.+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~-~~~~t~~~~~~--~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGK-RPGVTRKIIEI--E-WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSS-STTCTTSCEEE--E-ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCC-CCCccceeEEE--e-cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999999998864 2221 12333332222 2 22 789999999876554433222222222221
Q ss_pred c----CCCccEEEEEEecCCCCCHHHHHHHH---------HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCC
Q 022188 100 A----KDGIHAFLVVFSVTNRFSQEEETAVH---------RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (301)
Q Consensus 100 ~----~~~~~~il~v~~~~~~~~~~~~~~l~---------~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~ 166 (301)
+ ...++++++|+|.. .+......+.. .+....... .|+++|+||+|.... . .+.
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~------ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEV------ 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHH------
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHH------
Confidence 2 34456777777775 22111111111 111111112 299999999998755 2 111
Q ss_pred chHHHHHHHcCCc-------eEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 167 KPLKEILQLCDNR-------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 167 ~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
...+....+.. ++. +|++++.+++++++++.+.+...
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 142 --INFLAEKFEVPLSEIDKVFIP------ISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp --HHHHHHHHTCCGGGHHHHEEE------CCTTTCTTHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHhhhhhhccCCcEEE------EecCCCCCHHHHHHHHHHhcchh
Confidence 22333444432 344 78889999999999998877653
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.69 E-value=3.4e-16 Score=123.62 Aligned_cols=156 Identities=19% Similarity=0.119 Sum_probs=94.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
+..+|+|+|.+|+|||||+|++++..... . .+ |...........++ ..+.+|||||... ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~ 68 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-L-EK---TESEQYKKEMLVDGQTHLVLIREEAGAPD------------AK 68 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-SS---CSSSEEEEEEEETTEEEEEEEEECSSSCC------------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-c-CC---CcceeEEEEEEECCEEEEEEEEECCCCch------------hH
Confidence 45899999999999999999999876532 1 11 11111111122344 3578999999654 11
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCc-cccCeEEEEEeCCCCCCC--ccccHHHHhcccCCchHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~ 171 (301)
+ ++++|++++|+|++++.+... ..++.++...... ....|+++|.||+|+... .....++ ...
T Consensus 69 ~----~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~~ 135 (178)
T 2iwr_A 69 F----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------ARA 135 (178)
T ss_dssp H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HHH
T ss_pred H----HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HHH
Confidence 2 234599999999985443333 2333345444221 012399999999997421 0011111 223
Q ss_pred HHHHc-CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 172 ILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.... +..++. +||+++.+++++++++...+.
T Consensus 136 ~~~~~~~~~~~~------~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 136 LXADMKRCSYYE------TXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHSSEEEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHhhcCCeEEE------EeccccCCHHHHHHHHHHHHH
Confidence 33333 344554 788889999999999876553
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.68 E-value=3.9e-17 Score=141.85 Aligned_cols=170 Identities=18% Similarity=0.118 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
.|+|+|.+|||||||+|+|++....... ....|.......+...++..+.+|||||+.........+...+.+.+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~- 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER- 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence 6899999999999999999987642211 1222333332223322347899999999754211112233444444443
Q ss_pred CCCccEEEEEEecCC---CCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 101 KDGIHAFLVVFSVTN---RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 101 ~~~~~~il~v~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
++++|+|+|+++ +-...+ ..++..+..........|+++|+||+|+... . +. +..+...+
T Consensus 237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~---e~--------~~~l~~~l 300 (342)
T 1lnz_A 237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A---EN--------LEAFKEKL 300 (342)
T ss_dssp ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H---HH--------HHHHHHHC
T ss_pred ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H---HH--------HHHHHHHh
Confidence 499999999984 232233 3344555543211123499999999997643 1 11 22233333
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcCC
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 213 (301)
... .....+||.++.++++|+.+|...+.....
T Consensus 301 ~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 301 TDD----YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred hcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 321 122347889999999999999998876544
No 133
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.68 E-value=1.1e-16 Score=146.62 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc----------------cc----CCCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK----------------AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (301)
..++|+|+|++|+|||||+|+|++..... .. ....+.|.......+. +.+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECC
Confidence 45899999999999999999996211100 00 0001233333333334 678899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
|+.++.. .... ++..+|++|+|+|++.+.+......+..+... + . |+++++||+|....
T Consensus 91 G~~df~~-------~~~~----~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~--i--PiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTE-------DTYR----TLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H--T--PIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCH-------HHHH----GGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T--C--CEEEEEECTTSCCS
T ss_pred CchhHHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C--C--CEEEEEeCCCCccc
Confidence 9887532 2333 34566999999999988888888877766543 3 2 99999999998644
No 134
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=4.5e-16 Score=133.44 Aligned_cols=173 Identities=12% Similarity=0.141 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--C-CCc----------------------ceee--------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--S-SGV----------------------TKTC-------------- 58 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~-~~~----------------------t~~~-------------- 58 (301)
..++|+|+|.+|+|||||+|+|+|....+.+.. . .+. |+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999886432211 1 010 1100
Q ss_pred ----------EeEEEEeeCCeeEEEEeCCCCCCCCC--CcHHHHHHHHHHHhccCCCccEEE-EEEecCCCCCHHHH-HH
Q 022188 59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE-TA 124 (301)
Q Consensus 59 ----------~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~~ 124 (301)
........+...+.+|||||+..... ....+...+...+..++..++.++ +|+|++..++..+. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00011112246899999999876431 011111122223333344556555 78999866665553 34
Q ss_pred HHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHH
Q 022188 125 VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (301)
Q Consensus 125 l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 204 (301)
++.+.. .. .|+++|+||+|..... ....+.+.... ..+...+.+ ....||+++.++++|++.+
T Consensus 185 ~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~~--------~~~~~~~~~---v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 185 AKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLENKL--------LPLRRGYIG---VVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp HHHHCT---TC--SSEEEEEECGGGSCTT-CCCHHHHTTCS--------SCCTTCEEE---CCCCCCBCTTSCBCHHHHH
T ss_pred HHHhCC---CC--CeEEEEEEccccCCCC-chHHHHHhCCc--------CcCCCCcEE---EECCChhhccccccHHHHH
Confidence 444432 12 3899999999987541 11222222100 001111222 3457888999999999988
Q ss_pred HHH
Q 022188 205 NSV 207 (301)
Q Consensus 205 ~~~ 207 (301)
...
T Consensus 248 ~~~ 250 (299)
T 2aka_B 248 AAE 250 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=5.3e-16 Score=138.46 Aligned_cols=165 Identities=15% Similarity=0.113 Sum_probs=103.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-C------------CCCCcceeeEe----EEEEeeCCeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-A------------GSSGVTKTCEM----KTTVLKDGQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~------------~~~~~t~~~~~----~~~~~~~~~~~~liDtPG~~ 80 (301)
+..+|+++|++|+|||||+|+|++....... . .....+..... ..........+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4589999999999999999999985431100 0 00000000000 00000112678999999964
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHH
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~ 159 (301)
++ ...+.. .+..+|++++|+|++.+. .......+..+... +.. |+++++||+|+.+. ....+
T Consensus 87 ~~-------~~~~~~----~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~---~iivviNK~Dl~~~--~~~~~ 149 (403)
T 3sjy_A 87 VL-------MATMLS----GAALMDGAILVVAANEPFPQPQTREHFVALGII-GVK---NLIIVQNKVDVVSK--EEALS 149 (403)
T ss_dssp GG-------HHHHHH----HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCC---CEEEEEECGGGSCH--HHHHH
T ss_pred HH-------HHHHHH----HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCC---CEEEEEECccccch--HHHHH
Confidence 42 222333 345679999999999766 55556666655543 432 89999999998765 43444
Q ss_pred HhcccCCchHHHHHHHcC---CceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 160 FLGHECPKPLKEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.... +..++...+ .++++ .||.++.++++|++.|...++.
T Consensus 150 ~~~~-----i~~~l~~~~~~~~~ii~------vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQ-----IKQFTKGTWAENVPIIP------VSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHhhCCCCCEEEE------EECCCCcChHHHHHHHHHhCCC
Confidence 3333 444444332 34454 7888999999999999987653
No 136
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.68 E-value=8.7e-16 Score=124.41 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=99.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
...+|+|+|.+|+|||||+|++++...... ...|...........++ ..+.+|||||..... .
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 91 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N 91 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------T
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------H
Confidence 457999999999999999999998664211 11222211111111233 478999999965421 1
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc---cCC-chH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KPL 169 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~---~~~-~~l 169 (301)
....++..+|++++|+|++++.+... ..++..+..... . .|+++|.||+|+.... ....+.... ... ...
T Consensus 92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 167 (205)
T 1gwn_A 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG 167 (205)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence 12335678899999999984433333 234455555433 2 3999999999976431 111111110 000 113
Q ss_pred HHHHHHcC-CceEEecCCCccccc-chhHHHHHHHHHHHHH
Q 022188 170 KEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (301)
Q Consensus 170 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~ 208 (301)
..+....+ ..++. +||+ .+.+++++++.+.+.+
T Consensus 168 ~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 168 ANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence 34444545 35555 7887 6889999999987654
No 137
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.67 E-value=1.2e-15 Score=143.74 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=102.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce------------------------------------------
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK------------------------------------------ 56 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~------------------------------------------ 56 (301)
.++|+|+|.+++|||||+|+|+|..+++.+... +|.
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~--~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC--SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc--ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 468999999999999999999998876555321 111
Q ss_pred ---------eeEeEEEEeeCCeeEEEEeCCCCCCCCC---Cc---HHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH
Q 022188 57 ---------TCEMKTTVLKDGQVVNVIDTPGLFDLSA---GS---EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE 121 (301)
Q Consensus 57 ---------~~~~~~~~~~~~~~~~liDtPG~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 121 (301)
..-...+...+...++||||||+..... +. ..+...+..++ ...+|++++|+|++..+...+
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi---~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV---TKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH---TSTTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH---hcCCcEEEEEEcCCCCcchhH
Confidence 0001111223445789999999987432 11 22333333333 267899999999987676666
Q ss_pred H-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHH
Q 022188 122 E-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQL 200 (301)
Q Consensus 122 ~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 200 (301)
. .++..+... + .|+++|+||+|...... ...+.... .....+ ..|....+.||.++.|+++|
T Consensus 206 ~l~ll~~L~~~-g----~pvIlVlNKiDlv~~~~-~~~~il~~----------~~~~l~-lg~~~VV~iSA~~G~GvdeL 268 (772)
T 3zvr_A 206 ALKIAKEVDPQ-G----QRTIGVITKLDLMDEGT-DARDVLEN----------KLLPLR-RGYIGVVNRSQKDIDGKKDI 268 (772)
T ss_dssp HHHHHHHHCTT-C----SSEEEEEECTTSSCTTC-CSHHHHTT----------CSSCCS-SCEEECCCCCCEESSSSEEH
T ss_pred HHHHHHHHHhc-C----CCEEEEEeCcccCCcch-hhHHHHHH----------Hhhhhh-ccCCceEEecccccccchhH
Confidence 5 455555432 2 29999999999875511 11111111 000000 11233455789999999999
Q ss_pred HHHHHH
Q 022188 201 LSLVNS 206 (301)
Q Consensus 201 ~~~l~~ 206 (301)
++.+..
T Consensus 269 ~eaI~~ 274 (772)
T 3zvr_A 269 TAALAA 274 (772)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 138
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-15 Score=123.57 Aligned_cols=163 Identities=20% Similarity=0.169 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
...+|+|+|.+|+|||||+|++++... +.....+.+.+... ..+. .++. .+.+|||+|... ...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~--~~i~-~~~~~~~l~~~Dt~g~~~----------~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE--RTLM-VDGESATIILLDMWENKG----------ENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEE--EEEE-ETTEEEEEEEECCTTTTH----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEE--EEEE-ECCeeeEEEEeecCCCcc----------hhh
Confidence 347999999999999999999997543 22221122222211 1222 4554 457899998432 111
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (301)
.....++..++++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 122345678899999999984433222 223333433211 1123999999999976431111111 11222
Q ss_pred HHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+..++. +||+++.+++++++.+...+.
T Consensus 173 ~~~~~~~~e------~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 VVFDCKFIE------TSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 334555555 899999999999999987654
No 139
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=137.20 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=96.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|+|++....... +|.......+. ..+..+.||||||...... ..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-----pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~-----------~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE-YKNISFTVWDVGGQDKIRP-----------LW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-----EETTEEEEEEE-ETTEEEEEEECC-----CC-----------SH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-----cccceEEEEEe-cCcEEEEEEECCCCHhHHH-----------HH
Confidence 3468999999999999999999987642211 23333333333 5778999999999544322 11
Q ss_pred hccCCCccEEEEEEecCCCCCHHH--HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH-HHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE-ILQ 174 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~-~~~ 174 (301)
..++..+|++|+|+|++++-+... ..+...+....... .|+++|+||+|+... ....+.... +.. ...
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilV~NK~Dl~~~--~~~~~i~~~-----~~~~~~~ 297 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD--AVLLVFANKQDLPNA--MNAAEITDK-----LGLHSLR 297 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTC--CCHHHHHHH-----HTCTTCC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCC--CeEEEEEECccCCcc--cCHHHHHHH-----hchhhhh
Confidence 223456799999999985444333 22333333221112 399999999998755 333322221 000 000
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..++. +|++++.|+++|++.|.+.+..
T Consensus 298 ~~~~~~~~------vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 298 HRNWYIQA------TCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp SSCEEEEE------CBTTTTBTHHHHHHHHHHHHTC
T ss_pred cCCCEEEE------EECCCCcCHHHHHHHHHHHHHh
Confidence 01122333 7888999999999999877643
No 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.67 E-value=2e-15 Score=135.00 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=104.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEeEEEEee--------------C--------CeeEEEE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li 74 (301)
..++|+++|+.++|||||+++|+|...... .....+.|........... . ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 457999999999999999999997643111 1111233443332221110 0 1678999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
||||..+ +...+......+|++++|+|++++. .....+.+..+.. ++.. |+++++||+|+...
T Consensus 89 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~---~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQK---NIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCC---CEEEEEECGGGSCH-
T ss_pred ECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCC---cEEEEEECccCCCH-
Confidence 9999432 2223333345679999999999665 6666666665554 3432 79999999998754
Q ss_pred cccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
....+.... +..++... +.++++ .|+.++.++++|++.|...++.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAENAPIIP------ISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTTCCEEE------CBTTTTBSHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence 332222332 44444432 234454 7888999999999999987653
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=3.6e-15 Score=133.22 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=98.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEeEEEEee--------------C--------CeeEEEE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li 74 (301)
...+|+++|+.++|||||+++|+|....... ....+.|........... . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4589999999999999999999976431111 111233443332211110 1 1678999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
||||.. .+...+......+|++++|+|++++. .....+.+..+.. ++.. |+++++||+|+...
T Consensus 87 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~---~iivv~NK~Dl~~~- 150 (408)
T 1s0u_A 87 DSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGID---KIIIVQNKIDLVDE- 150 (408)
T ss_dssp ECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCC---CEEEEEECTTSSCT-
T ss_pred ECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCC---eEEEEEEccCCCCH-
Confidence 999932 23334444456789999999999665 5666666665543 3432 79999999998754
Q ss_pred cccHHHHhcccCCchHHHHHHHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
........+ +..++... +.++++ .|+.++.++++|++.|...++.
T Consensus 151 -~~~~~~~~~-----i~~~l~~~~~~~~~~i~------vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 -KQAEENYEQ-----IKEFVKGTIAENAPIIP------ISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp -TTTTTHHHH-----HHHHHTTSTTTTCCEEE------C------CHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHhhcCCCCCeEEE------eeCCCCCCHHHHHHHHHHhCCC
Confidence 221111111 33344322 234444 7888999999999999987653
No 142
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=1.2e-15 Score=133.83 Aligned_cols=172 Identities=13% Similarity=0.115 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc-----------------------eee---------------
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVT-----------------------KTC--------------- 58 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t-----------------------~~~--------------- 58 (301)
.++|+|+|.+|+|||||+|+|+|....+.+.. ...++ +..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999876433211 11111 000
Q ss_pred ---------EeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccC-CCccEEEEEEecCCCCCHHHHHHHH
Q 022188 59 ---------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVH 126 (301)
Q Consensus 59 ---------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~ 126 (301)
........+...++||||||+...... ...+.+.+...+..++ ...+++++|++++..+...+.. .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~--~ 188 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--K 188 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH--H
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH--H
Confidence 001111123467999999998763221 1111122222222222 3446677777877555555432 2
Q ss_pred HHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.+....... .|+++|+||+|..... ....+.+.. .. ......++. ....|++++.++.+|++.+..
T Consensus 189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~-~~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLEN-KL-------LPLRRGYIG---VVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTT-CS-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhC-Cc-------ccccCCceE---EEeCCcccccccccHHHHHHH
Confidence 333332222 3899999999987541 112222221 00 000111222 344788889999999988865
No 143
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.66 E-value=3.1e-15 Score=128.60 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=98.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH-HHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~ 96 (301)
..+|+|+|.+|+|||||+|++++... +.+. ..+.|...........++..+.+|||||.... ...+ ...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~--~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~ 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR--RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQ 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG--GCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccc--CcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhH
Confidence 47899999999999999999988742 2211 23445544444433235678999999995431 1111 112
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...++.++|++++|+|++++.+..+. .+..++..........|+++++||+|+... ....+.... .......+...
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~v-~~~~~~~~~~~ 150 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQI-MMKNLSETSSE 150 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHH-HHHHHHHHHHT
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHHH-HHHHHHHHHHH
Confidence 22335788999999999965544443 333444443211112399999999998753 122111000 00114455565
Q ss_pred cC---CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 176 CD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 176 ~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.| ..++. +|+++ .++.+++..+..
T Consensus 151 ~g~~~~~~~~------tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 151 FGFPNLIGFP------TSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp TTCCSCEEEE------CCTTS-SHHHHHHHHHHH
T ss_pred cCCCCeEEEE------eeecC-ChHHHHHHHHHH
Confidence 55 34454 67666 566666665544
No 144
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.65 E-value=5.5e-16 Score=138.48 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc--C------CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS--A------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
....+|+++|++|+|||||+|+|++.. .+... . ...+.|.......+. ..+..+.+|||||..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHH
Confidence 345899999999999999999998731 10000 0 011334433333333 4678899999999766
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHH
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~ 160 (301)
+ ...+.. .+..+|++|+|+|++++........+..+... +. | +++++||+|+... ...++..
T Consensus 88 f-------~~~~~~----~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~-~~~~~~~ 150 (405)
T 2c78_A 88 Y-------IKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDD-PELLDLV 150 (405)
T ss_dssp G-------HHHHHH----HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCC-HHHHHHH
T ss_pred H-------HHHHHH----HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCc-HHHHHHH
Confidence 3 122222 34567999999999877777777777766553 43 6 8899999998743 0222222
Q ss_pred hcccCCchHHHHHHHcC-----CceEEecCCCcccccchhH------------------HHHHHHHHHHHHh
Q 022188 161 LGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV 209 (301)
Q Consensus 161 ~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------------~~~L~~~l~~~~~ 209 (301)
... +..++...+ .++++ .|++++.+ +.+|++.+...++
T Consensus 151 ~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 151 EME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 222 455555554 23444 67777766 7778888777664
No 145
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.65 E-value=9.3e-16 Score=141.28 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=88.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC------------------Cccc--cCCCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK------------------AFKA--SAGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~------------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (301)
+.++|+|+||.++|||||..+|+-.. +.+. .....+.|.......+. |++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence 45899999999999999999996110 0000 01122555555555555 899999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
|..|+.. ++.+++..+ |++|+|+|+..+...+....|+.+.+. + + |+++++||+|....
T Consensus 109 GHvDF~~-------Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~-~--l--p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSE-------DTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR-A--T--PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSH-------HHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT-T--C--CEEEEEECTTSCCC
T ss_pred CcHHHHH-------HHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh-C--C--ceEEEEecccchhc
Confidence 9999864 777888777 999999999999999999988887764 3 3 99999999998655
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.65 E-value=4.9e-15 Score=129.88 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (301)
.+|+|+|++|+|||||+|+|+|....... ..+.|.......+. .++..+.++||||+... .+... .+.+...+ .
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i~-~~g~~v~l~DT~G~i~~-lp~~l-ve~f~~tl-~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAIP-INNRKIMLVDTVGFIRG-IPPQI-VDAFFVTL-S 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEE-ETTEEEEEEECCCBCSS-CCGGG-HHHHHHHH-H
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEEE-ECCEEEEEEeCCCchhc-CCHHH-HHHHHHHH-H
Confidence 45999999999999999999998752221 12223222222233 56788999999997542 12211 12222222 2
Q ss_pred cCCCccEEEEEEecCCCC--CHHHH-HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 100 AKDGIHAFLVVFSVTNRF--SQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
.+..+|++++|+|++++. ..... .+...+... +. ...|+++|+||+|.... . ....... +..+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence 356779999999998443 12222 233444443 21 12389999999998654 2 2211111 11222322
Q ss_pred -CC--ceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 177 -DN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 177 -~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.. .++ ++|+.++.++++|++.|...+...
T Consensus 324 ~~~~~~~~------~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 324 YSPIFDVI------PISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCEEEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCcEE------EEECCCCcCHHHHHHHHHHHhccc
Confidence 11 233 378889999999999999887653
No 147
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=4.1e-15 Score=120.65 Aligned_cols=174 Identities=13% Similarity=0.177 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcH--HHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~ 94 (301)
..+.+|+|+|++|+|||||+|+|+|...........+.+...... . .++ .+.++||||+.....+.. .......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~-~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--E-VAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--E-EET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--E-ecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 356899999999999999999999876211111112222222221 1 223 678999999865322111 1111112
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
..+......++++++++|+..+.+..+.....++.. .+. |++++.||+|.... ......+.. +..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~----~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNI----AVLVLLTKADKLAS--GARKAQLNM-----VREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTC----CEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEecccCCCc--hhHHHHHHH-----HHHHHH
Confidence 222222356799999999986666655445454433 232 88999999997654 221111222 334443
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
..+..+ .+ .++|+.++.+++++++.+.+....
T Consensus 168 ~~~~~~-~~---~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDV-QV---ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCE-EE---EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCC-ce---EEEeecCCCCHHHHHHHHHHHHhh
Confidence 333211 11 136778889999999999877644
No 148
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1.8e-15 Score=136.16 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=100.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEeEEEEe
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVL 65 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~ 65 (301)
+....++|+++|++|+|||||+|+|++....... ....+.|.......+.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~- 91 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE- 91 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe-
Confidence 3445689999999999999999999654211000 0012455555555444
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCC-------HHHHHHHHHHHHhhCccccC
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVFD 138 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~ 138 (301)
..+..+.+|||||..+ +...+...+..+|++|+|+|++.+.. ...++.+..+.. ++.+
T Consensus 92 ~~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~--- 156 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVK--- 156 (439)
T ss_pred cCCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCC---
Confidence 5678999999999544 22233333456799999999986543 345555554443 3432
Q ss_pred eEEEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHH
Q 022188 139 YMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (301)
Q Consensus 139 ~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 202 (301)
++++++||+|+... ....+++.... +..++..++.......+..+.||.++.++.++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 49999999998542 11223333333 4555555543200000112378888889888544
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.64 E-value=4.1e-15 Score=132.40 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=105.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC------ccc----cC----CCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----SA----GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~------~~~----~~----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (301)
..+|+++|++|+|||||+++|++... +.. .. ...+.|.......+. ..+..+.+|||||..+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChHH---
Confidence 47899999999999999999987411 000 00 012344444333332 4568899999999433
Q ss_pred CcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHhcc
Q 022188 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
+...+...+..+|++++|+|++++........+..+.. .+. | +++++||+|+... ...++....+
T Consensus 79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v----p~iivviNK~Dl~~~-~~~~~~~~~~ 144 (397)
T 1d2e_A 79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV----EHVVVYVNKADAVQD-SEMVELVELE 144 (397)
T ss_dssp --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CCEEEEEECGGGCSC-HHHHHHHHHH
T ss_pred --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC----CeEEEEEECcccCCC-HHHHHHHHHH
Confidence 33334445678899999999997777777777766654 343 6 7899999998743 0222222222
Q ss_pred cCCchHHHHHHHcCC-----ceEEecCCCcccccchh---------H-HHHHHHHHHHHHhh
Q 022188 164 ECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ 210 (301)
Q Consensus 164 ~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~-~~~L~~~l~~~~~~ 210 (301)
+..++...+. ++++ .||.++. + +.+|++.+...++.
T Consensus 145 -----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 4555655542 4444 6666544 4 88999998887653
No 150
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.64 E-value=7.2e-16 Score=141.44 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
...+|+|+|.+|+|||||+|+|++... ... ..|.......+. ..+..+.+|||||..... ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~~----~~T~~~~~~~~~-~~~~~~~l~Dt~G~~~~~-----------~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VTT----IPTVGFNVETVT-YKNVKFNVWDVGGQDKIR-----------PLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CCC----CCCSSEEEEEEE-SSSCEEEEEEECCCGGGS-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CCc----CCccceeEEEEE-eCCEEEEEEECCCcHHHH-----------HHH
Confidence 357999999999999999999998773 211 123333333333 577899999999965432 123
Q ss_pred hccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHc
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (301)
..++..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|+... ....+.... ... ......
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~~~~-~~~---~~~~~~ 456 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA--MKPHEIQEK-LGL---TRIRDR 456 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC--CCHHHHHHH-TTC---TTCCSS
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC--CCHHHHHHH-hch---hhhhcC
Confidence 345678899999999985433333 223333322111 012399999999998654 222222211 000 000001
Q ss_pred CCceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
+..++. +||+++.|+++++++|.+.+....
T Consensus 457 ~~~~~~------~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 457 NWYVQP------SCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp CEEEEE------CBTTTTBTHHHHHHHHHHHCC---
T ss_pred CeEEEE------EECCCCCCHHHHHHHHHHHHHhcC
Confidence 112333 889999999999999988876543
No 151
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=2.2e-15 Score=135.64 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=97.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC--cccc----------CCC-------------------CCcceeeEeEEEEe
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKAS----------AGS-------------------SGVTKTCEMKTTVL 65 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~--~~~~----------~~~-------------------~~~t~~~~~~~~~~ 65 (301)
...++|+++|++|+|||||+|+|++... +... ... .+.|.......+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 3457999999999999999999986531 0000 000 1233333333333
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
..+..+.+|||||..++ ...+.. .+..+|++++|+|++++........+..+.. ++.. |+++++|
T Consensus 101 ~~~~~~~iiDtpGh~~f-------~~~~~~----~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~---~iIvviN 165 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIK---HIVVAIN 165 (434)
T ss_dssp CSSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCC---EEEEEEE
T ss_pred cCCceEEEEECCChHHH-------HHHHHH----HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEE
Confidence 56778999999996552 122222 3457799999999997777777777666554 3432 6999999
Q ss_pred CCCCCCCccccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHHH
Q 022188 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 146 k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
|+|+...+...++..... +..++...+ .++++ .|++++.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~i~------vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAFVP------MSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEEEE------CCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceEEE------EeccCCCCccc
Confidence 999875311223333333 555666666 23333 67777777776
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.5e-15 Score=131.84 Aligned_cols=171 Identities=18% Similarity=0.219 Sum_probs=84.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeeEeEEEE-eeCCe--eEEEEeCCCCCCCCC------
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSA------ 84 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~--~~~liDtPG~~~~~~------ 84 (301)
..+|+|+|++|+|||||+|+|++...+..+..+ ...|......... ..++. .+++|||||+.+...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999988766543211 1123222222211 12333 689999999966432
Q ss_pred -CcHHHHHHHHHHHhcc---------CCCccEEEEEEec-CCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 85 -GSEFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 85 -~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
....+...+..++... ..++|+++|+++. ..++...+..+++.+. ..+ |+++|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~~--piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NKV--NIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S-S--CEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cCC--CEEEEEECCCCCCH-
Confidence 1122222332333221 2346789999986 4577777765555442 233 99999999998765
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhH---HHHHHHHHHHHH
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ---VRQLLSLVNSVI 208 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~ 208 (301)
..+..+... +...+...+.+++. .|++.+.+ +..++..+...+
T Consensus 190 -~ev~~~k~~-----i~~~~~~~~i~~~~------~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 -KERERLKKR-----ILDEIEEHNIKIYH------LPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp -HHHHHHHHH-----HHHHTTCC-CCSCC------CC---------CHHHHHHHHHTC
T ss_pred -HHHHHHHHH-----HHHHHHHCCCCEEe------CCCcCCCcchhHHHHHHHHHhcC
Confidence 444443333 44445444544444 44444444 334444444433
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.63 E-value=2.3e-15 Score=137.25 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc-cc----------------------------cCCCCCcceeeEeEEEEeeCCe
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF-KA----------------------------SAGSSGVTKTCEMKTTVLKDGQ 69 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~-~~----------------------------~~~~~~~t~~~~~~~~~~~~~~ 69 (301)
..+|+++|++|+|||||+|+|++.... .. .....+.|.......+. ..+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCCc
Confidence 479999999999999999999755110 00 00012445544444444 5678
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEEE
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIV 142 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~il 142 (301)
.+.+|||||..++ ...+. ..+..+|++|+|+|++.+ +.......+..+.. ++.. |+++
T Consensus 112 ~~~iiDTPG~~~f-------~~~~~----~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~---~iIv 176 (483)
T 3p26_A 112 NFTIVDAPGHRDF-------VPNAI----MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NLII 176 (483)
T ss_dssp EEEEECCCCCGGG-------HHHHH----HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCC---CEEE
T ss_pred eEEEEECCCcHHH-------HHHHH----HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCC---cEEE
Confidence 9999999997552 12222 334567999999999854 34455555555443 3432 7999
Q ss_pred EEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHH
Q 022188 143 VFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 143 v~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 199 (301)
++||+|+.......+++.... +..++...+. .+++ +||+++.|+.+
T Consensus 177 viNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------iSA~~g~gi~e 227 (483)
T 3p26_A 177 AMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYK 227 (483)
T ss_dssp EEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEEE------CCSSSCTTSSS
T ss_pred EEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEEE------EeeecCCCccc
Confidence 999999875322334443333 5555555443 2333 67777777764
No 154
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.63 E-value=2.2e-15 Score=119.83 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-CccccCCCCCcceeeEe--EEEE----eeCCeeEEEEeCCCCCCCCCCcHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTKTCEM--KTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~----~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (301)
.+|+|+|++|+|||||+|++++.. .+... ...|..... .... ......+.+|||||...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~---~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------- 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM---QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE----------- 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHH-----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCC---cceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------
Confidence 689999999999999999999863 22111 111221111 1111 01345789999999432
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCH-H-HHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQ-E-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~-~-~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
+......++.+.+++++|+|++++.+. . ...++..+..... + .|+++|.||+|+... ..+.+.... ...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~ 139 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITK 139 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHH
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHH
Confidence 111111123456899999999854221 1 1334444443322 2 299999999997644 222211111 011
Q ss_pred HHHHHcCCc----eEEecCCCcccccchh-HHHHHHHHHHHHHhh
Q 022188 171 EILQLCDNR----CVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (301)
Q Consensus 171 ~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~L~~~l~~~~~~ 210 (301)
.+....+.. ++. +||+++. ++.+|++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~------~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHF------VNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEEEEEEE------CCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcchhheEE------EecccCchhHHHHHHHHHHHHhc
Confidence 222223333 333 7888885 999999998877654
No 155
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.62 E-value=3.6e-15 Score=131.15 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=79.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--cce---------------------------------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTK--------------------------------------- 56 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~--~t~--------------------------------------- 56 (301)
...+|+|+|++|||||||+|+|+|...++.+..... ++.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345899999999999999999999876555432110 000
Q ss_pred -----------eeEeEEEEeeCCeeEEEEeCCCCCCCCCC--cHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHH
Q 022188 57 -----------TCEMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET 123 (301)
Q Consensus 57 -----------~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~ 123 (301)
......+.......+++|||||+...... .......+......++.++|++++|++... .......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCCHH
Confidence 00001111123457899999999875321 122333444555555678899999998752 1222223
Q ss_pred HHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 124 AVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 124 ~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
++..+....... .|+++|+||+|....
T Consensus 192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 192 AIKISREVDPSG--DRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred HHHHHHHhcccC--CCEEEEEeCCccCCC
Confidence 344444432222 389999999998754
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.62 E-value=4.9e-15 Score=137.30 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=97.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-cccc------------CCCCCcceeeEeEEEEee--C--CeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKAS------------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~ 80 (301)
..++|+|+|+.|+|||||+++|+.... .... ....+.|.......+.+. + +..+++|||||..
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 458999999999999999999975221 0000 001234444333333322 2 3578999999987
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 160 (301)
++. .++...+..+ |++++|+|++++.+......+..+... + . |+++++||+|+... ..+..
T Consensus 83 dF~-------~ev~~~l~~a----D~aILVVDa~~gv~~qt~~~~~~~~~~-~--i--piIvViNKiDl~~a---~~~~v 143 (599)
T 3cb4_D 83 DFS-------YEVSRSLAAC----EGALLVVDAGQGVEAQTLANCYTAMEM-D--L--EVVPVLNKIDLPAA---DPERV 143 (599)
T ss_dssp GGH-------HHHHHHHHHC----SEEEEEEETTTCCCTHHHHHHHHHHHT-T--C--EEEEEEECTTSTTC---CHHHH
T ss_pred HHH-------HHHHHHHHHC----CEEEEEEECCCCCCHHHHHHHHHHHHC-C--C--CEEEeeeccCcccc---cHHHH
Confidence 742 2444455444 999999999978877776666555432 2 3 99999999998754 12222
Q ss_pred hcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. .+...++.. .......|++++.|+++|++.+...++.
T Consensus 144 ~~--------ei~~~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 144 AE--------EIEDIVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HH--------HHHHHTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HH--------HHHHHhCCC---cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 22 222333321 0112237899999999999999888764
No 157
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.62 E-value=4.3e-15 Score=130.60 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|++++|||||+++|+ ..+.|.......+. +.+..+.+|||||..++ ...+...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~~--- 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITAL--- 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHHH---
Confidence 89999999999999999998 11333333334333 56778999999998774 12333333
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE-EEEEe-CCCCCCCccccHHHHhcccCCchHHHHHHHcCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~n-k~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (301)
..+|++++|+| +.....+.++.+..+.. ++. |. ++++| |+|+ .. ..++....+ ++.++...+.
T Consensus 82 -~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 82 -NISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp -HTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred -HHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 45699999999 76777777777666654 344 55 88899 9997 43 333332233 4444443332
Q ss_pred ceEEecCCCc--ccccc---hhHHHHHHHHHHHHHhh
Q 022188 179 RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 179 ~~~~~~~~~~--~~~~~---~~~~~~L~~~l~~~~~~ 210 (301)
..+++ .+ .||.+ +.++++|++.|...++.
T Consensus 147 ~~~~i---i~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWEC---ISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEE---EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceEE---EecccccccCcCCCCHHHHHHHHHhhccc
Confidence 11111 13 57777 89999999988776643
No 158
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.61 E-value=5.3e-15 Score=136.86 Aligned_cols=163 Identities=17% Similarity=0.251 Sum_probs=99.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c-----------CCCCCcceeeEeEEEEee--CC--eeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~ 80 (301)
..++|+|+|+.|+|||||+++|++... +.. . ....+.|.......+.+. ++ ..+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 458999999999999999999975211 000 0 001233333333333221 22 578999999987
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 160 (301)
++. .++...+. .+|++|+|+|++++.+......+..+... + . |+++++||+|+... ..+..
T Consensus 85 dF~-------~ev~r~l~----~aD~aILVVDa~~gv~~qt~~~~~~a~~~-~--i--piIvviNKiDl~~a---~~~~v 145 (600)
T 2ywe_A 85 DFS-------YEVSRALA----ACEGALLLIDASQGIEAQTVANFWKAVEQ-D--L--VIIPVINKIDLPSA---DVDRV 145 (600)
T ss_dssp GGH-------HHHHHHHH----TCSEEEEEEETTTBCCHHHHHHHHHHHHT-T--C--EEEEEEECTTSTTC---CHHHH
T ss_pred hHH-------HHHHHHHH----hCCEEEEEEECCCCccHHHHHHHHHHHHC-C--C--CEEEEEeccCcccc---CHHHH
Confidence 742 24444444 45999999999988887777666555432 2 3 89999999998654 12222
Q ss_pred hcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.. .+...++.. .......||+++.|+++|++.+...++.
T Consensus 146 ~~--------el~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 146 KK--------QIEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HH--------HHHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HH--------HHHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 22 222333321 0112338999999999999999888764
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=6.6e-15 Score=127.86 Aligned_cols=165 Identities=17% Similarity=0.086 Sum_probs=102.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCee--EEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+++|.+|+|||||++++++...... ...|+..........++.. +.+|||||..... ..
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~ 219 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-----------RL 219 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCS----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-----------TT
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcc----cCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-----------HH
Confidence 47899999999999999999996654221 1223222222222345554 4599999965532 22
Q ss_pred HhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcc----cC-CchH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKPL 169 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~----~~-~~~l 169 (301)
...++..+|++++|+|++++.+.... .++..+....+ . .|+++|+||+|+... ....+.+.. .. ....
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-C--CcEEEEEEchhcccc--cchhhhccccccccccHHHH
Confidence 23356788999999999854433332 34555555433 2 399999999997643 111111110 00 0112
Q ss_pred HHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+....+. .++. +|++++.+++++++.+...+.
T Consensus 295 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 344445554 5555 788899999999999987653
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.5e-15 Score=138.42 Aligned_cols=157 Identities=16% Similarity=0.166 Sum_probs=100.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CC---------------CCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AG---------------SSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~--------------~~---------------~~~~t~~~~~~~~~~~~ 67 (301)
....+|+|+|++|+|||||+|+|++....... .. ..+.|.......+. ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence 34589999999999999999999976331100 00 02445444444444 56
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeE
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
+..+.||||||+.+ +...+...+..+|++|+|+|++.+ ........+..+.. ++.. |+
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~---~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIH---NL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCC---EE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCC---eE
Confidence 78999999999755 344445567789999999999832 23444454444443 3432 69
Q ss_pred EEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcCC-----ceEEecCCCcccccchhHHHHH
Q 022188 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVRQL 200 (301)
Q Consensus 141 ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~L 200 (301)
++++||+|+.......+++.... +..++..++. .+++ +||.++.|+.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~i~------vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWVP------ISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEEEE------CCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccEEe------eecccCCCcccc
Confidence 99999999875321333433333 5555555543 3444 777778887754
No 161
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.61 E-value=3.1e-14 Score=134.92 Aligned_cols=206 Identities=18% Similarity=0.214 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC-ccc-cCC--------------CCCcceeeEeEEEEeeCC-------eeEEE
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA-FKA-SAG--------------SSGVTKTCEMKTTVLKDG-------QVVNV 73 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~-~~~-~~~--------------~~~~t~~~~~~~~~~~~~-------~~~~l 73 (301)
...++|+|+|+.|+|||||+++|+.... +.. +.. ..+.|.......+. +.+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEE
Confidence 3568999999999999999999964311 000 000 12344444444433 444 78999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
|||||..++. .+...++. .+|++|+|+|++.+........+..+... + . |+++++||+|....
T Consensus 87 iDTPG~~df~-------~~~~~~l~----~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-~--i--p~ilviNKiD~~~~- 149 (704)
T 2rdo_7 87 IDTPGHVDFT-------IEVERSMR----VLDGAVMVYCAVGGVQPQSETVWRQANKY-K--V--PRIAFVNKMDRMGA- 149 (704)
T ss_pred EeCCCccchH-------HHHHHHHH----HCCEEEEEEeCCCCCcHHHHHHHHHHHHc-C--C--CEEEEEeCCCcccc-
Confidence 9999987742 23344443 45999999999977776666666655432 2 2 89999999997654
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhh-cCCC-----CCchHHHHHHHHH
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ-NGGQ-----PYTDELKRGATEL 227 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~-----~~~~~~~~~~~~~ 227 (301)
.+.+.+. .+...++....++..+.... ....++-+++..-...... ..+. ..+.++.+.+.+.
T Consensus 150 --~~~~~~~--------~l~~~l~~~~~~~~~Pi~~~-~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 218 (704)
T 2rdo_7 150 --NFLKVVN--------QIKTRLGANPVPLQLAIGAE-EHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW 218 (704)
T ss_pred --cHHHHHH--------HHHHHhCCCceeEEcccccc-ccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHH
Confidence 2333333 33344454444444322211 1122333333322111111 0011 1334444444443
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHHHH
Q 022188 228 RDKKAEVDSLKEYSKREISKLMGQMQ 253 (301)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (301)
+.+.++.+.+.+++.++++.+..+
T Consensus 219 --~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 219 --HQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred --HHHHHHHHHhcCHHHHHHHhcCCC
Confidence 344456666777777777766443
No 162
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.40 E-value=4.8e-17 Score=131.61 Aligned_cols=165 Identities=16% Similarity=0.063 Sum_probs=94.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC--eeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
....+|+|+|.+|+|||||++++++....... ..|+..........++ ..+.+|||||.....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------- 92 (204)
Confidence 34589999999999999999999876542211 1111111111111223 356699999965421
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHH--HHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhccc-----CCc
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK 167 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~-----~~~ 167 (301)
.....++..+|++++|+|++++.+.... .++..+....+ ..|+++|+||+|+... ....+.+... ...
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
Confidence 2222345677999999999854433332 45555554332 2399999999998644 2111111100 000
Q ss_pred hHHHHHHHcCC-ceEEecCCCcccccchhHHHHHHHHHHHH
Q 022188 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (301)
Q Consensus 168 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 207 (301)
....+....+. ++ ..+||+++.+++++++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~------~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 168 QGLAMAKEIGAVKY------LECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 01122222222 22 347899999999999987653
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.61 E-value=2e-17 Score=151.08 Aligned_cols=161 Identities=14% Similarity=0.179 Sum_probs=105.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
.++|+|+|++|+|||||+|+|++...... ...+.|.....+.....++..+++|||||..++... ..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 46799999999999999999997654222 223444444333333235668999999997664321 22
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH---HHH
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI---LQL 175 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~---~~~ 175 (301)
..+..+|++++|+|++++........+..+... + . |+++++||+|+.......+... +... ...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-~--v--PiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~ 137 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-H--V--PIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED 137 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-T--C--CEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-C--C--cEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence 345678999999999988888887777766643 3 3 8999999999764311111111 1111 011
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
++.. ++ ..+.||+++.++++|++.+...+.
T Consensus 138 ~~~~-~~---iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 138 YGGD-VQ---AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSS-EE---ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred cCCC-ce---EEEEECCCCCCchhHHHHHHHhhh
Confidence 1111 11 234789999999999999988764
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.60 E-value=5.9e-15 Score=136.90 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=77.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe-----------------eCCeeEEEEeCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD 81 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~ 81 (301)
.++|+|+|++|+|||||+++|++....... +.+.|.......... .....+++|||||..+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 378999999999999999999976442111 112222221111110 0112589999999877
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
+.... ...+..+|++++|+|+++++.......+..+... + . |+++++||+|+..
T Consensus 83 F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~--v--PiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY-R--T--PFVVAANKIDRIH 136 (594)
T ss_dssp CTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T--C--CEEEEEECGGGST
T ss_pred HHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C--C--eEEEEeccccccc
Confidence 64321 1235668999999999988888888777776653 3 2 9999999999864
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.60 E-value=8.8e-15 Score=117.19 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (301)
..+|+|+|.+|+|||||+|+++|... +.....+.+.+... ..+. .++. .+.+|||+|...... .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~l~~~Dt~~~~~~~~--------~-- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYE--RTLM-VDGESATIILLDMWENKGENE--------W-- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEE--EEEE-ETTEEEEEEEECCCCC----C--------T--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEE--EEEE-ECCeEEEEEEEEeccCcchhh--------h--
Confidence 47899999999999999999996432 22211111222111 1122 4554 457899999544100 0
Q ss_pred HHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHH
Q 022188 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (301)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (301)
....++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+........++ ...+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 01112344699999999985433333 2344444443211 123899999999975321011111 112223
Q ss_pred HcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..++. +||+++.++++++..+...+.
T Consensus 143 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 143 VFDXKFIE------TSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HTTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HhCCceEE------eccccCCCHHHHHHHHHHHHH
Confidence 34445554 899999999999999877653
No 166
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.5e-15 Score=118.20 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=74.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|++|+|||||+|+|++......... ...++. ....+..+.+|||||........ ..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~------~~~~~~~~~l~Dt~G~~~~~~~~-------~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSA------ADYDGSGVTLVDFPGHVKLRYKL-------SDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCH-------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCcee------eeecCCeEEEEECCCCchHHHHH-------HHH
Confidence 3458999999999999999999998764221111 111111 11245678999999987654321 222
Q ss_pred HhccCCCccEEEEEEecC-CCCCHHH-HHHHHHHHHhhC--ccccCeEEEEEeCCCCCCCccccHHHHhc
Q 022188 97 LGMAKDGIHAFLVVFSVT-NRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~nk~D~~~~~~~~~~~~~~ 162 (301)
+......+|++++|+|++ ++-+... ..++..+..... .....|+++|+||+|+... ..+.+...
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence 222224569999999997 2211111 122222222111 0012399999999998766 44544443
No 167
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.58 E-value=1.6e-14 Score=130.11 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=92.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------c---------------CCCCCcceeeEeEEEEeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (301)
+.++|+++|+.|+|||||+++|++.. .+.. + ....+.|.......+. +.+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence 45899999999999999999998541 1110 0 0012344444444333 567
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-------CCHHHHHHHHHHHHhhCccccCeEE
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (301)
..+.+|||||..++ ...+..++..+|++++|+|+++. +....+..+..+.. ++.. |++
T Consensus 84 ~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~---~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLD---QLI 148 (435)
T ss_dssp CEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCT---TCE
T ss_pred eEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eEE
Confidence 88999999997762 22233456788999999999854 33344554444443 3432 689
Q ss_pred EEEeCCCCCCCc--cccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHH
Q 022188 142 VVFTGGDDLEDH--EKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVR 198 (301)
Q Consensus 142 lv~nk~D~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 198 (301)
+++||+|+...+ ...++..... +..++...+ ..+++ .|+.++.++.
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~ 201 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT 201 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence 999999987521 1223333343 566666655 23444 6667777765
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.58 E-value=1.6e-14 Score=116.21 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCe--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|||||||+++|+|........ ...+.......+. .++. .+.+|||||........
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~---------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQ-VDGKTIKAQIWDTAGQERYRRIT---------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEE-ETTEEEEEEEEECSSGGGTTCCC----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEECCCchhhhhhh----------
Confidence 4789999999999999999999876422211 1111122122222 4554 56789999965432111
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+..++++++|+|+....+... ..++..+...... ..|+++++||+|+.........+ .+.+...
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 139 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 139 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence 112356799999999984333322 2334444333222 23899999999975331111111 2344444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.+..++. +|+.++.++.++++.+...+.
T Consensus 140 ~~~~~~d------~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIE------TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4443333 677888999999999887654
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=2.7e-15 Score=122.52 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
....+|+|+|++|+|||||+|+|++........ ....++.. ......+.+|||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET------TGGGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE------EeeCceEEEEECCCcHHHH-------HHHHHH
Confidence 345899999999999999999999876422211 11122111 1245678999999986532 122233
Q ss_pred HhccCCCccEEEEEEecC-C--CCCHHHHHHHHHHHHh---hCccccCeEEEEEeCCCCCCC
Q 022188 97 LGMAKDGIHAFLVVFSVT-N--RFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~--~~~~~~~~~l~~l~~~---~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+......+|++++|+|++ + .+......+...+... .... .|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence 322223469999999998 3 3333333332332221 1122 399999999998766
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.57 E-value=1.4e-16 Score=144.31 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+++|++|+|||||+++|++....... ..+.|.....+.+. +++..+++|||||..++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHH-----------H
Confidence 3478999999999999999999865432111 12334333333333 56778999999998775431 1
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
...+..+|++++|+|++++........+..+... +. |+++++||+|+...+...+...+.. .. .+...++
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~v----PiIVviNKiDl~~~~~~~v~~~l~~-~~----~~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-QV----PVVVAVNKIDKPEADPDRVKNELSQ-YG----ILPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-TC----CEEEEEECSSSSTTCCCCTTCCCCC-CC----CCTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-Cc----eEEEEEEeccccccCHHHHHHHHHH-hh----hhHHHhC
Confidence 2335677999999999876666666666655442 33 8999999999864311122111111 00 0001111
Q ss_pred --CceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 178 --NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
.++++ .||+++.++++|++++..
T Consensus 139 ~~~~~v~------vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQFVH------VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSCEEEE------CCTTTCTTCTTHHHHTTT
T ss_pred CCccEEE------EeeeeccCcchhhhhhhh
Confidence 23343 788999999999999854
No 171
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=3e-15 Score=141.73 Aligned_cols=119 Identities=25% Similarity=0.351 Sum_probs=80.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC---CCCccc----c--CC-------CCCcceeeEeEEEEeeCCeeEEEEeCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S--AG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g---~~~~~~----~--~~-------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (301)
...++|+|+|++|+|||||+|+|++ ...... + .. ..+.|.......+. +.+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCc
Confidence 3568999999999999999999984 211000 0 00 11233333333333 678899999999998
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
++.. +...++.. +|++|+|+|+..+.+......+..+... +. |+++++||+|....
T Consensus 87 df~~-------~~~~~l~~----aD~~llVvDa~~g~~~~~~~~~~~~~~~-~~----p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTV-------EVERSLRV----LDGAVTVLDAQSGVEPQTETVWRQATTY-GV----PRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCH-------HHHHHHHH----CSEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred chHH-------HHHHHHHH----CCEEEEEECCCCCCcHHHHHHHHHHHHc-CC----CEEEEEECCCcccc
Confidence 7532 34444443 4999999999978888887777766553 32 89999999998754
No 172
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=6.2e-14 Score=124.60 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeeEeEEEEe-eCC--eeEEEEeCCCCCCCCCCc---HH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---EF 88 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~----~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~---~~ 88 (301)
.+.|+|+|++|+|||||+|+|+|...+..+... ...|.......+.. ..+ ..+++|||||+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 468999999999999999999998763332110 11222211111111 112 368999999997642111 11
Q ss_pred HH----HHHHHHH-------hccC--CCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCcc
Q 022188 89 VG----KEIVKCL-------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (301)
Q Consensus 89 ~~----~~~~~~~-------~~~~--~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~ 154 (301)
+. ..+..++ ...+ +.+|++||++.++ ..+...+..+++.+.. .+ |+++|+||+|....
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~v--~iIlVinK~Dll~~-- 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KV--NIIPLIAKADTLTP-- 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----TS--EEEEEEESTTSSCH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----cC--cEEEEEEcccCccH--
Confidence 11 1111111 1122 3456788888775 5788888766666542 22 89999999998765
Q ss_pred ccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHH
Q 022188 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (301)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 206 (301)
..+..+... +...+...+.+++.+ |+.++.++.+++..+..
T Consensus 183 ~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHH-----HHHHHHHHTCCCCCC------C----------------
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHh
Confidence 555555444 555666666655543 33344555555554444
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=8.8e-14 Score=135.11 Aligned_cols=164 Identities=19% Similarity=0.197 Sum_probs=103.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
.+..+|+++|++|+|||||+++|++... +. . .....+.|.......+. ..+..+.+|||||..+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHHH-
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChHH-
Confidence 3458999999999999999999986410 00 0 00112334333222223 4667899999999443
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEEEeCCCCCCCccccHHHHh
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~nk~D~~~~~~~~~~~~~ 161 (301)
+...+...+..+|++|+|+|++++........+..+.. .+. | +++++||+|+.... ..++...
T Consensus 372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~-lgI----P~IIVVINKiDLv~d~-e~le~i~ 435 (1289)
T 3avx_A 372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ-VGV----PYIIVFLNKCDMVDDE-ELLELVE 435 (1289)
T ss_dssp ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH-HTC----SCEEEEEECCTTCCCH-HHHHHHH
T ss_pred ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH-cCC----CeEEEEEeecccccch-hhHHHHH
Confidence 33334445678899999999997777777777766654 343 6 78999999987530 1222222
Q ss_pred cccCCchHHHHHHHcC-----CceEEecCCCcccccch--------hHHHHHHHHHHHHHh
Q 022188 162 GHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (301)
Q Consensus 162 ~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~--------~~~~~L~~~l~~~~~ 209 (301)
.+ +..++...+ .++++ .|+.++ .++.+|++.+...++
T Consensus 436 eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence 22 455565554 24454 566665 578889988877654
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=1.3e-14 Score=137.34 Aligned_cols=120 Identities=22% Similarity=0.283 Sum_probs=79.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC---CCCc----ccc--C-------CCCCcceeeEeEEEEeeCCeeEEEEeCCCC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILG---RKAF----KAS--A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g---~~~~----~~~--~-------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (301)
....++|+|+|++|+|||||+++|+. .... ..+ . ...+.|.......+. +.+..+++|||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~ 87 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGH 87 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCc
Confidence 34568999999999999999999982 2100 000 0 012344444444333 67889999999998
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
.++. .+...++.. +|++|+|+|++.+.+......+..+... +. |+++++||+|....
T Consensus 88 ~df~-------~~~~~~l~~----aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNKiD~~~~ 144 (691)
T 1dar_A 88 VDFT-------IEVERSMRV----LDGAIVVFDSSQGVEPQSETVWRQAEKY-KV----PRIAFANKMDKTGA 144 (691)
T ss_dssp TTCH-------HHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECTTSTTC
T ss_pred cchH-------HHHHHHHHH----CCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCcccC
Confidence 7742 234444444 4999999999988888877777766543 32 89999999998754
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.55 E-value=1.9e-14 Score=130.19 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=93.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC-Cccc-------------cCC---------------CCCcceeeEeEEEEeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-------------SAG---------------SSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~ 68 (301)
...+|+++|++|+|||||+|+|++.. .+.. +.. ..+.|.......+. ..+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence 34799999999999999999998641 1100 000 12344444444333 567
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCH-------HHHHHHHHHHHhhCccccCeEE
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 141 (301)
..+.+|||||..+ +...+...+..+|++|+|+|++++... .....+..+.. .+.+ +++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v~---~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGVR---QLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTCC---EEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCCC---eEE
Confidence 8899999999654 233344456788999999999843222 33444443332 3432 599
Q ss_pred EEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC-----CceEEecCCCcccccchhHHH
Q 022188 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-----NRCVLFDNKTKDEAKGTEQVR 198 (301)
Q Consensus 142 lv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 198 (301)
+++||+|+...+...++..... +..++...+ .++++ .||..+.++.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence 9999999873211333444443 555555555 24554 5666666654
No 176
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.55 E-value=2.4e-15 Score=141.21 Aligned_cols=117 Identities=21% Similarity=0.287 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCCCcc----ccCC---------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK----ASAG---------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~---g~~~~~----~~~~---------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
.++|+|+||.++|||||..+|+ |...-. .+.. ..+.|.......+. |++..++||||||..|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHH
Confidence 5789999999999999999985 221100 0000 01455555555544 78899999999999997
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
. .++...+..+ |++|+|+|+..+...+.+..|+.+.+. +. |.++++||+|....
T Consensus 81 ~-------~Ev~raL~~~----DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 L-------AEVYRSLSVL----DGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI 134 (638)
T ss_dssp H-------HHHHHHHTTC----SEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred H-------HHHHHHHHHh----CEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence 4 3677777665 999999999989999998888887765 33 88999999998755
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.54 E-value=1e-13 Score=110.80 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCee--EEEEeCCCCCCCCCCcHHHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC 96 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (301)
..+|+|+|++|||||||+++++|....... ....+.......+. .++.. +.+|||||........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~~~---------- 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRAIT---------- 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSCCC----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhhhh----------
Confidence 478999999999999999999987653221 11222222222222 45654 4579999976543211
Q ss_pred HhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH
Q 022188 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (301)
...+..++++++|+|..+..+... ..++..+...... ..|+++++||+|+.......... .+.+...
T Consensus 96 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 163 (191)
T 1oix_A 96 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 163 (191)
T ss_dssp -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred -HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 112345689999999873322222 2233334332221 23899999999975321011111 2344444
Q ss_pred cCCceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.+..++. +|+.++.++.++++.+.+.+
T Consensus 164 ~~~~~ld------~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NGLSFIE------TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHh
Confidence 4433333 67788899999999887643
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.53 E-value=1.4e-14 Score=132.88 Aligned_cols=118 Identities=15% Similarity=0.189 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc--cC------------------CCCCcceeeEeEEEEeeCCeeEEEEeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--SA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (301)
..++|+|+|++|+|||||+++|++...... +. ...+.|.......+. +.+..+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEECC
Confidence 458999999999999999999985321100 00 011222222223333 678899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
|..++. .....+ +..+|++|+|+|++.+........+..+... + . |+++++||+|....
T Consensus 91 G~~df~-------~~~~~~----l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-~--i--piivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-------EDTYRT----LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-D--T--PILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-------HHHHHG----GGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-T--C--CEEEEEECTTSCCS
T ss_pred CChhHH-------HHHHHH----HHHCCEEEEEEeCCccchHHHHHHHHHHHHc-C--C--CEEEEEcCcCCccc
Confidence 987753 123333 4566999999999977777666666655432 2 2 89999999998655
No 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=4.6e-14 Score=130.45 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=94.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeE----EEE---eeCCeeEEEEeCCCCCCCCCCcHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK----TTV---LKDGQVVNVIDTPGLFDLSAGSEFVG 90 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~----~~~---~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (301)
...+|+|+|.+|||||||+|++++...........+.+...... ... ...+..+.+|||||.........
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--- 116 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--- 116 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH---
Confidence 45899999999999999999999876422111111111111000 000 01256899999999655433221
Q ss_pred HHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHH
Q 022188 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~ 170 (301)
.+ +..+|++++|+|+++ . .....++..+....+ + .|+++|.||+|.........++ +.
T Consensus 117 ----~~----l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~---------~~ 174 (535)
T 3dpu_A 117 ----FF----MTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK---------IN 174 (535)
T ss_dssp ----HH----HHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH---------HH
T ss_pred ----HH----ccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH---------HH
Confidence 11 234699999999983 2 333556666766533 2 3999999999986541111111 33
Q ss_pred HHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
......+.+++. +||+++.|+++|+..+...+...
T Consensus 175 ~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 175 ERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTCT
T ss_pred HHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhcc
Confidence 344445556666 88899999999999999887653
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.52 E-value=1.6e-14 Score=133.17 Aligned_cols=138 Identities=20% Similarity=0.285 Sum_probs=81.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEE--------------------------------
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-------------------------------- 64 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 64 (301)
....+|+|+|.+|+|||||+|+|+|........+..+.|+........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 356899999999999999999999987631112222222221110000
Q ss_pred ----eeCC---eeEEEEeCCCCCCCCCCcHHHHHH--HHHHHhccCCCccEEEEEEecCC-CCCHHHHHHHHHHHHhhCc
Q 022188 65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK 134 (301)
Q Consensus 65 ----~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~ 134 (301)
.+.. ..+.||||||+.+.... .+.+. +......+...+|++++|+|++. .+...+..++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 0000 36899999999863210 00000 11222222345699999999984 4666667776666542
Q ss_pred cccCeEEEEEeCCCCCCCccccHHHHhcc
Q 022188 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (301)
Q Consensus 135 ~~~~~~ilv~nk~D~~~~~~~~~~~~~~~ 163 (301)
. .|+++|+||+|.... ..+...+..
T Consensus 218 ~--~pvilVlNK~Dl~~~--~el~~~~~~ 242 (550)
T 2qpt_A 218 E--DKIRVVLNKADMVET--QQLMRVYGA 242 (550)
T ss_dssp G--GGEEEEEECGGGSCH--HHHHHHHHH
T ss_pred C--CCEEEEEECCCccCH--HHHHHHHHH
Confidence 2 289999999998765 555554443
No 181
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=3.2e-14 Score=126.09 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEE--EE------------------eeC---CeeEEEEeC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV------------------LKD---GQVVNVIDT 76 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~---~~~~~liDt 76 (301)
.+|+|+|.+|+|||||+|+|++... ... ..++.|....... +. .++ ...+.+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~-~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-ccc-CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999998763 111 1111222211111 00 012 246899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC
Q 022188 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR 116 (301)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~ 116 (301)
||+....... +.+...+...++.+|++++|+|+.++
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9986532111 11222223456889999999999843
No 182
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.3e-14 Score=122.56 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..+|+|+|.||+|||||+|+|+|..... ...++.|... ......+.+..+.++||||+............++...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~-~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVT-VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCE-EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeee-eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3689999999999999999999976422 2223344444 344445789999999999998653333334455555554
Q ss_pred ccCCCccEEEEEEecCCCCCHHHHHHHH-HHHHhhCcc-ccCeEEEEEeCCCCC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKN-VFDYMIVVFTGGDDL 150 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~l~-~l~~~~~~~-~~~~~ilv~nk~D~~ 150 (301)
. +|++++|+|++++.. +...+. .|.. ++.. ..+|.++++||.|..
T Consensus 149 ~----ad~il~vvD~~~p~~--~~~~i~~EL~~-~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 T----CNLLFIILDVNKPLH--HKQIIEKELEG-VGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----CSEEEEEEETTSHHH--HHHHHHHHHHH-TTEEETCCCCCEEEEECSSS
T ss_pred h----cCccccccccCccHH--HHHHHHHHHHH-hhHhhccCChhhhhhHhhhh
Confidence 4 499999999985432 222222 2322 2322 234888999999964
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=1.4e-13 Score=122.32 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-eeEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (301)
..|+|+|++|||||||+|+|++....... ....|.......+. +++ ..++++||||+.........+...+...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~-~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~-- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRH-- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEE-ecCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence 35899999999999999999987642211 11222222222222 343 7889999999865311100011122222
Q ss_pred ccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
...++.+++++|++ +-...+ ....+.+......-...|.++++||+|.... +.+.. +...+...+
T Consensus 233 --~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~~~-----l~~~l~~~g 298 (416)
T 1udx_A 233 --IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAVKA-----LADALAREG 298 (416)
T ss_dssp --HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHHHH-----HHHHHHTTT
T ss_pred --HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHHHH-----HHHHHHhcC
Confidence 24569999999996 222222 1222222222100012389999999996532 12222 333333334
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHHhhcC
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~ 212 (301)
..++. +||.++.++++|++.+...+....
T Consensus 299 ~~vi~------iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 299 LAVLP------VSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp SCEEE------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred CeEEE------EECCCccCHHHHHHHHHHHHHhcc
Confidence 45555 788889999999999999887543
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.51 E-value=7e-16 Score=143.47 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccc--------------c---------------CCCCCcceeeEeEEEEeeC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------AGSSGVTKTCEMKTTVLKD 67 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (301)
...++|+|+|++|+|||||+|+|++...... + ....+.|.......+. ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-SD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-eC
Confidence 3457899999999999999999964311000 0 0012334444433333 45
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCC-----C--CHHHHHHHHHHHHhhCccccCeE
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
+..+.||||||..++.. .+...+..+|++|+|+|++.+ + .......+..+.. ++.+ ++
T Consensus 254 ~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 67899999999876421 112234567999999999843 3 5556666555544 3442 48
Q ss_pred EEEEeCCCCCCCccccHHHHhcccCCchHHHHH-HHcCC-----ceEEecCCCcccccchhHHH--------------HH
Q 022188 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDN-----RCVLFDNKTKDEAKGTEQVR--------------QL 200 (301)
Q Consensus 141 ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~--------------~L 200 (301)
++++||+|+.......+...... +..++ ...+. .+++ +||+++.|+. .|
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~ii~------iSA~~G~gI~e~~~~~~~~w~~g~~L 387 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHFVP------ISAISGTNLIQKDSSDLYKWYKGPTL 387 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEEEE------ECSSSCSSSCSCCCCGGGGTCCSCCH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEEEE------EecccCcccccccccccccccchHHH
Confidence 99999999865311334444443 55555 44443 2444 6777788876 68
Q ss_pred HHHHHHHHh
Q 022188 201 LSLVNSVIV 209 (301)
Q Consensus 201 ~~~l~~~~~ 209 (301)
++.|...++
T Consensus 388 le~l~~~~p 396 (592)
T 3mca_A 388 LSALDQLVP 396 (592)
T ss_dssp HHHHHTSCC
T ss_pred HHHHHhhcc
Confidence 887766544
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=3.7e-13 Score=117.31 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=63.9
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHH-HhhCccccCeEEEEE
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVF 144 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~ilv~ 144 (301)
+.+..+.+|||||+.++. .. . ...+|++++|+|++.... +..+. ...+ .|.++|+
T Consensus 146 ~~~~~i~liDTpG~~~~~-------~~---~----~~~aD~vl~Vvd~~~~~~------~~~l~~~~~~----~p~ivv~ 201 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSE-------TE---V----ARMVDCFISLQIAGGGDD------LQGIKKGLME----VADLIVI 201 (341)
T ss_dssp HTTCSEEEEEEECCTTHH-------HH---H----HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEE
T ss_pred ccCCCEEEEeCCCccchH-------HH---H----HHhCCEEEEEEeCCccHH------HHHHHHhhhc----ccCEEEE
Confidence 346789999999987621 11 1 256799999999872211 11111 1111 2889999
Q ss_pred eCCCCCCCccccHHHHhcccCCchHHHHHHHcC-------CceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 145 nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
||+|.... ..+...+.. ++..+...+ ..+++ +|++++.|+++|+++|...+.
T Consensus 202 NK~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 202 NKDDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLT------CSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEE------CBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 99997643 233332222 333222222 23333 788899999999999988765
No 186
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.51 E-value=2.1e-13 Score=119.47 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=67.0
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
.+..+.||||||+... .... ...+|++++|+|+...-.. ..+.... ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence 4678999999997651 1111 2566999999998722111 1111110 11289999999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHHc-------CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+|.... ......... +...+... +.++++ +|++++.|+++|+++|...++.
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~------iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLT------MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEE------EBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEE------EEcCCCCCHHHHHHHHHHHHHH
Confidence 997644 333333332 33333222 234554 8999999999999999988765
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.51 E-value=2.6e-13 Score=128.01 Aligned_cols=116 Identities=27% Similarity=0.246 Sum_probs=81.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEeEEEEeeCCeeEEEEeCCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (301)
...+|+|+|++|+|||||+++|++.... ..+.. ..+.|...+...+. +.+..+++|||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccc
Confidence 4689999999999999999999843321 00100 01234444444433 6778899999999766
Q ss_pred CCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC
Q 022188 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~ 150 (301)
+ ..++..++.. +|++++|+|+..++......++..+... +. |+++++||+|..
T Consensus 87 f-------~~~~~~~l~~----ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VGEIRGALEA----ADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 139 (665)
T ss_dssp G-------HHHHHHHHHH----CSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred h-------HHHHHHHHhh----cCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence 3 1234444444 4999999999888888888777777653 33 899999999976
No 188
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=115.59 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=54.9
Q ss_pred CccEEEEEEecCCC--CCHHH-HHHHHHHHHhh-CccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHH-cC
Q 022188 103 GIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CD 177 (301)
Q Consensus 103 ~~~~il~v~~~~~~--~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 177 (301)
++|++++|+|++++ .+-.. ..++..+.... ... .|+++|.||+|+... ..++ . ...+... .+
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 58999999999855 45444 34444444431 112 399999999997543 2221 1 2333332 24
Q ss_pred CceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
..++. +||+++.+++++++++...+
T Consensus 229 ~~~~e------~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVVE------TSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEE------EECCCCCCHHHHHHHHHHHh
Confidence 44554 78899999999999987654
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.49 E-value=3.1e-13 Score=115.62 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=80.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCC----CCCcceeeEeEEEEe-eC--CeeEEEEeCCCCCCCCCC---cH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-ASAG----SSGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAG---SE 87 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~-~~~~----~~~~t~~~~~~~~~~-~~--~~~~~liDtPG~~~~~~~---~~ 87 (301)
..+|+|+|++|+|||||+|+|+|...++ ++.. ....+.......+.. .. ...+++|||||+.+.... ..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 4789999999999999999999874332 2210 001121111111111 11 347899999999542110 01
Q ss_pred HHHH----HHHHHHhcc---------CCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 88 FVGK----EIVKCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 88 ~~~~----~~~~~~~~~---------~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
.+.. .+...+... ...+++++|+++.+ ..+...+...++.+. ... |+++|+||.|....
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~~--~iilV~~K~Dl~~~- 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NKV--NIVPVIAKADTLTL- 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TTS--CEEEEECCGGGSCH-
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hcC--CEEEEEEeCCCCCH-
Confidence 1111 111222111 12346677777764 358777754443332 222 89999999997654
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
..+..+... ....+...+..++. .|++++ ++++++..+...+.
T Consensus 171 -~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 -KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHH
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhh
Confidence 333333333 45555555554444 677778 89998888776654
No 190
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.49 E-value=7.7e-14 Score=126.54 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=84.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-cc-------------cc---------------CCCCCcceeeEeEEEEeeCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK-------------AS---------------AGSSGVTKTCEMKTTVLKDG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~~ 68 (301)
..++|+++|+.++|||||+++|++... +. .+ ....+.|.......+. .++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TEH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CSS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cCC
Confidence 357999999999999999999974211 00 00 0012344444433333 567
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-------CHHHHHHHHHHHHhhCccccCe-E
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDY-M 140 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~-~ 140 (301)
..+.+|||||..++ ...+...+..+|++|+|+|++++. ....+..+..+.. .+. | +
T Consensus 121 ~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v----p~i 184 (467)
T 1r5b_A 121 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI----NHL 184 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC----SSE
T ss_pred eEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC----CEE
Confidence 89999999997653 222233456789999999998542 1233444444332 343 5 9
Q ss_pred EEEEeCCCCCCC--ccccHHHHhcccCCchHHHHHHHc-CC------ceEEecCCCcccccchhHHHHHH
Q 022188 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN------RCVLFDNKTKDEAKGTEQVRQLL 201 (301)
Q Consensus 141 ilv~nk~D~~~~--~~~~~~~~~~~~~~~~l~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~L~ 201 (301)
++++||+|+... +...++....+ +..++... +. .+++ .|+.++.++.+++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~i~------vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKYMP------VSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEEEE------CBTTTTBTTSSCC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceEEe------ccccccccccccc
Confidence 999999998542 11223333333 44555444 32 2343 6777777776544
No 191
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.48 E-value=1.2e-13 Score=131.34 Aligned_cols=123 Identities=28% Similarity=0.317 Sum_probs=87.5
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhCCCC--------------ccc--cCCCCCcceeeEeEEEEee------CCeeE
Q 022188 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKA--------------FKA--SAGSSGVTKTCEMKTTVLK------DGQVV 71 (301)
Q Consensus 14 ~~~~~~~~I~lvG~~g~GKStlin~l~g~~~--------------~~~--~~~~~~~t~~~~~~~~~~~------~~~~~ 71 (301)
+|.++.++|+|+||.++|||||..+|+-..- .+. .....+.|.......+.+. ++..+
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~i 87 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRV 87 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEE
T ss_pred CchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEE
Confidence 3445679999999999999999999862110 000 0112245555555555522 24689
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCC
Q 022188 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (301)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~ 151 (301)
+||||||..|+. .++..++..+ |++|+|+|+..+...+.+..|+...+. .+ |.++++||+|...
T Consensus 88 NlIDTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~ 151 (709)
T 4fn5_A 88 NVIDTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQG 151 (709)
T ss_dssp EEECCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTT
T ss_pred EEEeCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccC
Confidence 999999999974 3778888777 999999999999999999888887665 33 8999999999865
Q ss_pred C
Q 022188 152 D 152 (301)
Q Consensus 152 ~ 152 (301)
.
T Consensus 152 a 152 (709)
T 4fn5_A 152 A 152 (709)
T ss_dssp C
T ss_pred c
Confidence 5
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.46 E-value=7.6e-13 Score=115.54 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=59.3
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
.+..+.++||||+... .. .+ ...+|++++|+|++.+. +...+.. ..+. .|.++++||
T Consensus 165 ~~~~~iliDT~Gi~~~---~~----~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EF----AV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---HH----HH-------HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---hh----hH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHHh----cCCEEEEee
Confidence 5668899999998652 10 11 24669999999987332 1111110 1222 278999999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHH-------cCCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQL-------CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
+|.... ......... +...+.. ...++++ +|+.++.|+++|+++|...+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~------iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIR------ISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 997633 221111111 1111111 1123333 7888999999999999887653
No 193
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=113.46 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----CcceeeEeEEEEeeC---CeeEEEEeCCCCCCCCCCc---HH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF 88 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~---~~ 88 (301)
.+++|+|++|+|||||+|+|+|...+.+|.... ..+.......+.... ...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 689999999999999999999977654442111 111111111111111 2367999999997643211 11
Q ss_pred HH----HHHHHHHhc----------cCCCccEEEEEEecC-CCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 89 VG----KEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 89 ~~----~~~~~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
+. ..+...+.. ....+++.++++|.. .+++..+...++.+.+. .++++|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 11 122222211 112358888999865 78999998877777653 289999999998876
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEec
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFD 184 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 184 (301)
..+..+... ++..+...+..++.+.
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~~~ 180 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYPQK 180 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSSCS
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccCCC
Confidence 666666665 6666666676666543
No 194
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.43 E-value=9.8e-13 Score=116.47 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeeEeEEEEeeCC---eeEEEEeCCCCCCCCCCc---H----
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS---E---- 87 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~---~---- 87 (301)
++++|+|++|+|||||+|+|+|......... ..+.+.. ...+..... ..++++|+||++...... .
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3499999999999999999999864221111 1122221 111221221 268999999998642110 0
Q ss_pred HHHHHHHHHHhcc---------CC--CccE-EEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccc
Q 022188 88 FVGKEIVKCLGMA---------KD--GIHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (301)
Q Consensus 88 ~~~~~~~~~~~~~---------~~--~~~~-il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~ 155 (301)
.+...+..++... .+ .+|+ +++++|+..+++..+..+++.|. ... |+++|+||+|.+.. .
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~~--~vI~Vi~KtD~Lt~--~ 192 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SKV--NIIPIIAKADAISK--S 192 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SCS--EEEEEESCGGGSCH--H
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hCC--CEEEEEcchhccch--H
Confidence 1222222322221 11 2344 55566777788888877776664 123 99999999998876 5
Q ss_pred cHHHHhcc
Q 022188 156 TLEDFLGH 163 (301)
Q Consensus 156 ~~~~~~~~ 163 (301)
.+..+...
T Consensus 193 E~~~l~~~ 200 (427)
T 2qag_B 193 ELTKFKIK 200 (427)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 195
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.39 E-value=3.8e-12 Score=108.76 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhcc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
+|+++|..|+||||+++.+.+... +......++|.......+ .....+.+|||||...+..+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 489999999999999999886543 221112233333322222 234678999999987753211 0 01224
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHh--hCccccCeEEEEEeCCCCCCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~--~~~~~~~~~ilv~nk~D~~~~ 152 (301)
+++++++++|+|+++++...-..+..++... ...++ |++++.||+|+...
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~i--pillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSI--NIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTC--EEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCC--cEEEEEECcccCch
Confidence 6788999999999966333323332333321 12233 99999999998754
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.32 E-value=6.3e-12 Score=109.97 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=54.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEe--------------------eCCeeEEEEeCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KDGQVVNVIDTPGL 79 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~~liDtPG~ 79 (301)
.+|+|+|.+|+|||||+|+|++... ... .....|.......... ..+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~-~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LAA-NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TCS-SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-ccc-CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4699999999999999999998642 111 1111122211111110 12357899999999
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (301)
.........+...+...+ +.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 765322222333444443 45599999999973
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.31 E-value=4.6e-12 Score=110.19 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDL 82 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~ 82 (301)
.+|+|+|.+|+|||||+|+|++....... .++.|.......+. +.+ ..+.+|||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~--~p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN--YPFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 67999999999999999999987631111 11122222111112 222 46899999998763
Q ss_pred CCCcHHHHHHHHHHHhccCCCccEEEEEEecCC
Q 022188 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (301)
......+...+... ++.+|++++|+|+++
T Consensus 80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence 21001111122222 356699999999973
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.30 E-value=6.1e-12 Score=121.54 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC--------------CCCCcceeeEeEEEEee---------------CC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--------------GSSGVTKTCEMKTTVLK---------------DG 68 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (301)
..++|+|+|+.|+|||||+++|++........ ...+.|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999998642110000 01122333222222211 15
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D 148 (301)
..++||||||..++.. +...++. .+|++|+|+|+.++.+......+..+... .. |+++++||+|
T Consensus 98 ~~i~liDTPG~~df~~-------~~~~~l~----~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~~--p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-------EVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE---RI--KPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSCH-------HHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--EEEEEEECHH
T ss_pred ceEEEEECcCchhhHH-------HHHHHHH----hCCEEEEEEeCCCCCCHHHHHHHHHHHHc---CC--CeEEEEECCC
Confidence 6789999999988642 3444443 45999999999988888877666554432 22 8999999999
Q ss_pred CC
Q 022188 149 DL 150 (301)
Q Consensus 149 ~~ 150 (301)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 75
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.23 E-value=1.5e-10 Score=96.87 Aligned_cols=178 Identities=15% Similarity=0.025 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-----CCCCccccCCCCCc--------------ceeeEeE-EE-------------
Q 022188 17 NGERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT------------- 63 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~-----g~~~~~~~~~~~~~--------------t~~~~~~-~~------------- 63 (301)
.....++++|+.|+||||+++.|+ |..+......+... +...... ..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 345788999999999999999998 66543222111100 0000000 00
Q ss_pred ------------EeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHH-HHHHHHH
Q 022188 64 ------------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET-AVHRLPN 130 (301)
Q Consensus 64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~ 130 (301)
....+..+.+|||||..+... ...+...+...+.. +++++++|+....+..+.. .+.....
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~-----~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFL-----FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH-----HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh-----hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 000123789999999754210 00111111122345 8999999987444444322 1111111
Q ss_pred hhCccccCeEEEEEeCCCCCCCccccH---HHHhcccCCchHHH-----------------HHHHcCC--ceEEecCCCc
Q 022188 131 LFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHECPKPLKE-----------------ILQLCDN--RCVLFDNKTK 188 (301)
Q Consensus 131 ~~~~~~~~~~ilv~nk~D~~~~~~~~~---~~~~~~~~~~~l~~-----------------~~~~~~~--~~~~~~~~~~ 188 (301)
... ....|+++|+||+|.... ..+ .+++.. ....... ++...+. ++++
T Consensus 166 ~~~-~~~~p~~iv~NK~D~~~~--~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------ 235 (262)
T 1yrb_A 166 IDL-RLGATTIPALNKVDLLSE--EEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLY------ 235 (262)
T ss_dssp HHH-HHTSCEEEEECCGGGCCH--HHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEE------
T ss_pred Hhc-ccCCCeEEEEeccccccc--ccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCcccceE------
Confidence 000 112389999999997644 222 232221 0000001 1122221 3444
Q ss_pred ccccchhHHHHHHHHHHHHHhh
Q 022188 189 DEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 189 ~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.|++++.++++|++++...++.
T Consensus 236 ~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 236 LSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEecCcccHHHHHHHHHHHhcc
Confidence 7888999999999999888765
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.19 E-value=1.7e-12 Score=114.09 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCC-CCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFK----ASAGS-SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~----~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (301)
.+|+++|.+|+|||||+|+|++..... ...+. .+.|...... . . +..+.++||||+.+.......+..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~-~-~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--P-L-DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--E-S-SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--E-e-cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 679999999999999999999864221 11122 2333333222 2 1 223899999999886532222222222
Q ss_pred HHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHH
Q 022188 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (301)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~ 160 (301)
..+. ....++.++|+++....+.......+..+. +.. .|+++++||.|.... ..++..
T Consensus 237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~ 294 (368)
T 3h2y_A 237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKA 294 (368)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHH
T ss_pred HHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHH
Confidence 2221 235778899999884111111211222222 112 289999999998765 444443
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.18 E-value=3.2e-11 Score=104.65 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=59.5
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
.+..+.+|||||+... .. .+ ...+|.+++++++...- +. +.+..... . .+.++++||
T Consensus 146 ~~~~~iliDT~Gi~~~---~~----~v-------~~~~d~vl~v~d~~~~~---~~---~~i~~~i~-~--~~~ivvlNK 202 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ET----AV-------ADLTDFFLVLMLPGAGD---EL---QGIKKGIF-E--LADMIAVNK 202 (337)
T ss_dssp TTCCEEEEEECSSSSC---HH----HH-------HTTSSEEEEEECSCC------------CCTTHH-H--HCSEEEEEC
T ss_pred CCCCEEEEECCCCCcc---hh----hH-------HhhCCEEEEEEcCCCcc---cH---HHHHHHHh-c--cccEEEEEc
Confidence 5778999999998863 11 11 24669999999876221 11 11111000 1 156778899
Q ss_pred CCCCCCccccH-HHHhcccCCchHHHHHHHc-------CCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 147 GDDLEDHEKTL-EDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 147 ~D~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+|.... ... ...... +...+... ..++++ .|+.++.++++|++.|.....
T Consensus 203 ~Dl~~~--~~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl~------~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 203 ADDGDG--ERRASAAASE-----YRAALHILTPPSATWTPPVVT------ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSTTCC--HHHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhccCc--hhHHHHHHHH-----HHHHHHhccccccCCCCCEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 996533 111 111111 22112111 123343 788889999999999988765
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=1.8e-12 Score=113.96 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=71.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (301)
..+|+++|.+|+|||||+|+|++. .....+ ...+.|...... . -+..+.++||||+.+.......+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~--~--~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEI--P--LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEE--E--CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEE--E--eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999986 222122 122334433222 1 233489999999987643222222222
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
...+. ....++.++|++++...+.......+..+. +... |+++++||.|....
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~~--~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGRR--SFVCYMANELTVHR 289 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSSE--EEEEEECTTSCEEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCCc--eEEEEecCCccccc
Confidence 22221 135789999999985111111211222222 2222 89999999998754
No 203
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.13 E-value=4e-10 Score=105.30 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCccee----------eEe----------------------------
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT----------CEM---------------------------- 60 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~----------~~~---------------------------- 60 (301)
..|+|+|++|||||||+++|+|...+ .+|........- ...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 34999999999999999999998643 233322211110 000
Q ss_pred -------------EEEEeeCCeeEEEEeCCCCCCC--CCCcHHHHHHHHHHHhccCCC-ccEEEEEEecCCCCCHHHHHH
Q 022188 61 -------------KTTVLKDGQVVNVIDTPGLFDL--SAGSEFVGKEIVKCLGMAKDG-IHAFLVVFSVTNRFSQEEETA 124 (301)
Q Consensus 61 -------------~~~~~~~~~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~~~~ 124 (301)
..........+.++|.||+... .+.+......+...+..+... ...++.++.++..+... ..
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~--~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT--EA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC--HH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH--HH
Confidence 0000112346899999998763 333334445555555554333 35556666655233222 23
Q ss_pred HHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 125 VHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 125 l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
++.+...-... .++++|+||+|....
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 34444432222 279999999998865
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.12 E-value=2.7e-10 Score=103.32 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=71.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCcce-----------eeEeEEEE----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVTK-----------TCEMKTTV---------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~t~-----------~~~~~~~~---------------- 64 (301)
+..+|+|+|++|+||||+++.|+ |..+.-.......... ....+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999 7654222111100000 00011100
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe-EEEE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVV 143 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv 143 (301)
.+.+..++||||||.... +..+..++...... ..+|.+++|+|+..... .......+.+. . | ..+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~----~--~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK----V--DVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH----H--CCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh----c--CceEEE
Confidence 025678999999998763 23334444333221 26799999999985433 22333333332 1 5 4899
Q ss_pred EeCCCCCCC
Q 022188 144 FTGGDDLED 152 (301)
Q Consensus 144 ~nk~D~~~~ 152 (301)
+||+|....
T Consensus 247 lNK~D~~~~ 255 (504)
T 2j37_W 247 VTKLDGHAK 255 (504)
T ss_dssp EECTTSCCC
T ss_pred EeCCccccc
Confidence 999997643
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.11 E-value=1.8e-09 Score=95.70 Aligned_cols=169 Identities=19% Similarity=0.165 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc--ceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV--TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (301)
..++|+|++|||||||+|+|+|......+....+. ++.. .+.+.......++++|+||+...... ..++...+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~ 144 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKM 144 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHHH----HHHHHHHc
Confidence 58999999999999999999997765555332221 1111 11111112236899999998753211 12233332
Q ss_pred hccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCC--CC-----ccccHHHHhcccCCchHH
Q 022188 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL--ED-----HEKTLEDFLGHECPKPLK 170 (301)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~--~~-----~~~~~~~~~~~~~~~~l~ 170 (301)
.. ...+.+++ ++.. +.......+.+.+... +. |+++|+|+.|.. ++ +.....+.... ++
T Consensus 145 ~L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l~ 210 (413)
T 1tq4_A 145 KF--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-KK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----IR 210 (413)
T ss_dssp TG--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-TC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----HH
T ss_pred CC--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-CC----CeEEEEecCcccccCcccccCCHHHHHHHHHH-----HH
Confidence 21 22244444 6665 4555555555555542 33 899999998854 11 00122222222 33
Q ss_pred HHH----HHc---CCceEEecCCCcccccchhHHHHHHHHHHHHHhhc
Q 022188 171 EIL----QLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (301)
Q Consensus 171 ~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 211 (301)
.+. ... ...++++.... ..+.++++|.+.+...++..
T Consensus 211 ~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 211 LNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCccc
Confidence 332 122 23456644432 23357999999999888763
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.11 E-value=1.1e-10 Score=95.16 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc--ccc--CCCCCcce--------eeEeEEEE-----------------eeCCe
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF--KAS--AGSSGVTK--------TCEMKTTV-----------------LKDGQ 69 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~--~~~--~~~~~~t~--------~~~~~~~~-----------------~~~~~ 69 (301)
.++|+|+|++|+|||||++.|++.... ... ....+.+. ........ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 478999999999999999999864210 000 00001000 00000000 12345
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 149 (301)
.+.+|||||..... . ......+.+++|+|+...... .+... ...+. |.++++||+|.
T Consensus 110 d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~~----~~~~~-~~~~~----~~iiv~NK~Dl 166 (221)
T 2wsm_A 110 DLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDDV----VEKHP-EIFRV----ADLIVINKVAL 166 (221)
T ss_dssp SEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTTH----HHHCH-HHHHT----CSEEEEECGGG
T ss_pred CEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcchh----hhhhh-hhhhc----CCEEEEecccC
Confidence 67788888852210 0 011245788999998743221 11111 11222 89999999997
Q ss_pred CCCccccHHHHhcccCCchHHHHHHHc--CCceEEecCCCcccccchhHHHHHHHHHHHHHhh
Q 022188 150 LEDHEKTLEDFLGHECPKPLKEILQLC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 210 (301)
.......+++... .+... +.+++. .|++++.++++|++++...+..
T Consensus 167 ~~~~~~~~~~~~~---------~~~~~~~~~~i~~------~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 167 AEAVGADVEKMKA---------DAKLINPRAKIIE------MDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHTCCHHHHHH---------HHHHHCTTSEEEE------CBTTTTBTHHHHHHHHHHHHC-
T ss_pred CcchhhHHHHHHH---------HHHHhCCCCeEEE------eecCCCCCHHHHHHHHHHHHHH
Confidence 5320012322222 22222 234444 7888899999999999876643
No 207
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.06 E-value=4e-10 Score=103.89 Aligned_cols=107 Identities=20% Similarity=0.206 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEeEEEE--eeCCeeEEEEeCCCCCCCCC-CcHHHHHHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSA-GSEFVGKEI 93 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~~~ 93 (301)
+..+|+|+|.+|+|||||+|+|+|... +..+....+.|.....+... ...+..+.|+||||+.+... ........+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 457899999999999999999999875 22222222333322221111 12567899999999987543 221111111
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~ 130 (301)
.-....+ + ++|+++...++..+...+..+.+
T Consensus 117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111112 2 45566666788888776665544
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=100.34 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeC-----------------CeeEEEEeCCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------GQVVNVIDTPGLF 80 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~ 80 (301)
...+|+|+|.+|+|||||+|+|+|... ... ..+..|.......+. +. ...+.+|||||+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~-v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVP-VPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEE-ECCccceeeccccCcccccccccEEEECCCcc
Confidence 357899999999999999999999764 111 111222222221111 11 2358999999988
Q ss_pred CCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
........+...+... ++.+|++++|+|+.
T Consensus 98 ~~as~~~glg~~~l~~----ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSH----ISACDGIFHLTRAF 127 (396)
T ss_dssp ---------CCHHHHH----HHTSSSEEEEEEC-
T ss_pred cccchhhHHHHHHHHH----HHhcCeEEEEEecC
Confidence 6432222222233333 35669999999987
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=5.3e-10 Score=98.39 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=57.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCC-----------------eeEEEEeCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGL 79 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~ 79 (301)
..+.+|+|+|++|||||||+|+|+|........ .++.|.......+. +.+ ..+.+|||||+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~-~p~tTi~p~~G~v~-v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPAN-YPYATIDPEEAKVA-VPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTC-CSSCCCCTTEEEEE-ECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccC-CCceeecceeeeee-eCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346799999999999999999999966412211 11222222221122 232 36799999998
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC
Q 022188 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (301)
.......+.+...+... ...+|++++|+++.
T Consensus 96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 76443322222333333 34679999999987
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.97 E-value=1.2e-09 Score=92.41 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCCCcHH
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (301)
...+|+++|.+|+|||||+|+|+|.....++.. .+.|...+.. . .+..+.++||||+..+...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV--K--VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCCHH
Confidence 457899999999999999999999876444432 2334433322 1 2457899999999987655544
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.88 E-value=3e-08 Score=86.55 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=43.8
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+|||+|... .......++.+++++|+|+|+++.- ...-...+.++.......
T Consensus 198 ~~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eCCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 4567899999999533 2233455678999999999998410 111122333333332211
Q ss_pred ccCeEEEEEeCCCCC
Q 022188 136 VFDYMIVVFTGGDDL 150 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~ 150 (301)
...|++|++||.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 123999999999975
No 212
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.79 E-value=1.2e-07 Score=82.54 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=70.3
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC--------CHHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF--------SQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+|||+|... .......++.+++++|+|+|+++.- ...-.....++...+...
T Consensus 190 ~~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 190 FKDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp ETTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred eCCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 4677899999999443 2233445789999999999998421 111223334444433311
Q ss_pred ccCeEEEEEeCCCCCCCc--cccHHHHhcccCC-----chHHHHHH----Hc-----CCceEEecCCCcccccchhHHHH
Q 022188 136 VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP-----KPLKEILQ----LC-----DNRCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~~~~--~~~~~~~~~~~~~-----~~l~~~~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
...|++|++||.|+.... ...+..+... +. .....++. .. ...+..+ .+||.++.++.+
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~-~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~ 333 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPE-YAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQF 333 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTT-CCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccc-cCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHH
Confidence 123999999999974210 0001111000 00 00111221 11 1111111 278889999999
Q ss_pred HHHHHHHHHhh
Q 022188 200 LLSLVNSVIVQ 210 (301)
Q Consensus 200 L~~~l~~~~~~ 210 (301)
++.++...+..
T Consensus 334 vF~~v~~~i~~ 344 (353)
T 1cip_A 334 VFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876643
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.78 E-value=1.3e-07 Score=84.28 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=70.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCcc-----------eeeEeEEEE----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGVT-----------KTCEMKTTV---------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~t-----------~~~~~~~~~---------------- 64 (301)
++..|+++|++|+||||++..|+ |..+.-....+.... .....+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999987 443321111000000 000000000
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
...+..+.||||||.... +.....++..... ...+|.+++|+|+... .........+.+.. ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 013467899999997663 3344444444332 2357999999999832 22233334444332 2577999
Q ss_pred eCCCCCCC
Q 022188 145 TGGDDLED 152 (301)
Q Consensus 145 nk~D~~~~ 152 (301)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99997644
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.78 E-value=2e-08 Score=81.85 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|+|+|.+|+|||||++.+++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=7.1e-09 Score=86.62 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEeEEEEeeCCeeEEEEeCCCCCCCCC-CcHH
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA-GSEF 88 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~-~~~~ 88 (301)
.+++++|.+|+|||||+|+|+|.....++.. .+.|...+.. ..+..+.+|||||+.+... .+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~~ 164 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF----SLENGVKILDTPGILYKNIFSEDL 164 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCCCSHHH
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE----EeCCCEEEEECCCcccCcCCCChh
Confidence 5899999999999999999999876444322 2334333221 2245789999999998765 4443
No 216
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.70 E-value=6.6e-07 Score=76.76 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=70.3
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC-------CCCC-HHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------NRFS-QEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+|||.|- +........++.+++++|+|++++ +.-+ ..-...+.++.+.+...
T Consensus 164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 56788999999992 223344456789999999999764 1111 11123334444443321
Q ss_pred ccCeEEEEEeCCCCCCC--ccccHHHHhcccCCc---h---HHHHH----HH---cC-CceEEecCCCcccccchhHHHH
Q 022188 136 VFDYMIVVFTGGDDLED--HEKTLEDFLGHECPK---P---LKEIL----QL---CD-NRCVLFDNKTKDEAKGTEQVRQ 199 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~~~--~~~~~~~~~~~~~~~---~---l~~~~----~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
...|+++++||+|+... ....+..+... +.. . ...++ .. .. ..++.+ .++|.+..+++.
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~-y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~nV~~ 307 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPE-YDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRF 307 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTT-CCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHHHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchh-ccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCHHHHH
Confidence 12399999999997532 00112222211 100 0 11111 10 11 112211 267888899999
Q ss_pred HHHHHHHHHhh
Q 022188 200 LLSLVNSVIVQ 210 (301)
Q Consensus 200 L~~~l~~~~~~ 210 (301)
++..+.+.+..
T Consensus 308 vF~~v~~~Il~ 318 (327)
T 3ohm_A 308 VFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 217
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.69 E-value=1.5e-07 Score=81.01 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=46.8
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--------CCCHHHHHHHHHHHHhhCcc--
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--------RFSQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--------~~~~~~~~~l~~l~~~~~~~-- 135 (301)
.++..+.+|||+|- +........++.+++++|+|+|++. .-...-...+.++...+...
T Consensus 158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 46678999999992 2344445567899999999999971 01111122333333332211
Q ss_pred ccCeEEEEEeCCCCCC
Q 022188 136 VFDYMIVVFTGGDDLE 151 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~~ 151 (301)
...|++|++||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 1239999999999653
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.60 E-value=1.2e-07 Score=84.46 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCC---------------CcceeeEeE----------EE--E
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSS---------------GVTKTCEMK----------TT--V 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~---------------~~t~~~~~~----------~~--~ 64 (301)
++..|+++|++|+||||++..|. |..+.-...... +........ .. .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 333211110000 000000000 00 0
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
...+..+.+|||||..... .+.....++....... .++.+++|+|+... .......+.+.+.++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 0125678899999975411 1223334454443322 46899999999732 222334444544332 578999
Q ss_pred eCCCCCCC
Q 022188 145 TGGDDLED 152 (301)
Q Consensus 145 nk~D~~~~ 152 (301)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99997633
No 219
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.59 E-value=2.5e-07 Score=83.22 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=68.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---CCcc--------------eeeEeEEEE----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT--------------KTCEMKTTV---------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~---~~~t--------------~~~~~~~~~---------------- 64 (301)
.+..|+|+|++|+|||||++.|.|......+... .... ....+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 4578999999999999999999875322221100 0000 000010000
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHH---hcc-CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL---GMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
...+..+.++||+|.... ......++.... ... ...++-+++++|+..+ ......++.+.+.++ ..
T Consensus 372 ~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----it 441 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----LT 441 (503)
T ss_dssp HHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CS
T ss_pred HhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----CC
Confidence 012456889999998653 223333333322 212 2347888999998722 222344455555444 35
Q ss_pred EEEEeCCCCC
Q 022188 141 IVVFTGGDDL 150 (301)
Q Consensus 141 ilv~nk~D~~ 150 (301)
.+|+||+|..
T Consensus 442 gvIlTKLD~t 451 (503)
T 2yhs_A 442 GITLTKLDGT 451 (503)
T ss_dssp EEEEECGGGC
T ss_pred EEEEEcCCCc
Confidence 6899999964
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.56 E-value=8.3e-08 Score=85.73 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=66.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC------CccccCCC----------------------CCcceeeE--e--EEEEee
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK------AFKASAGS----------------------SGVTKTCE--M--KTTVLK 66 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~------~~~~~~~~----------------------~~~t~~~~--~--~~~~~~ 66 (301)
...|+|+|++|+||||+++.|.+.. +.-....+ .+.+.... . ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997631 11000000 00010000 0 000112
Q ss_pred CCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeC
Q 022188 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
.+..+.+|||||.... +.....++.. + .....+|.+++|+|+..+. ......+.+.... .....+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~~~~~~~~~~~~~----~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--QAGIQAKAFKEAV----GEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--GHHHHHHHHHTTS----CSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--HHHHHHHHHhhcc----cCCeEEEEeC
Confidence 4567899999997752 3333333322 1 1234789999999987332 1122222222111 0148899999
Q ss_pred CCCCC
Q 022188 147 GDDLE 151 (301)
Q Consensus 147 ~D~~~ 151 (301)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99753
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.55 E-value=1.5e-06 Score=74.75 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CC-Cc--------ceeeE--eEEEE---------------
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SS-GV--------TKTCE--MKTTV--------------- 64 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~------~~-~~--------t~~~~--~~~~~--------------- 64 (301)
.++..|+|+|++||||||+++.|+|......+.. .. .. ..... .....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3567899999999999999999987543221100 00 00 00000 00000
Q ss_pred -eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEE
Q 022188 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (301)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (301)
...+..+.++||+|....... ...++....... .+|..++++|+..+ ......++.+.+..+ ...++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 001345678999998653322 223333222211 36888999998733 222333444443332 46899
Q ss_pred EeCCCCC
Q 022188 144 FTGGDDL 150 (301)
Q Consensus 144 ~nk~D~~ 150 (301)
+||.|..
T Consensus 275 lTKlD~~ 281 (328)
T 3e70_C 275 LTKLDAD 281 (328)
T ss_dssp EECGGGC
T ss_pred EeCcCCc
Confidence 9999964
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.55 E-value=1.9e-06 Score=73.38 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=66.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCC-c----------ceeeEeEEEE----------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSG-V----------TKTCEMKTTV---------------- 64 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~-~----------t~~~~~~~~~---------------- 64 (301)
++..|+|+|++||||||+++.|.|......+. .... . ..........
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998643322110 0000 0 0000010000
Q ss_pred eeCCeeEEEEeCCCCCCCCCCcHHHHHHH---HHHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeE
Q 022188 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEI---VKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM 140 (301)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (301)
...+..+.++||+|..... .....++ ...+. .....|+.+++++|+..+. .....+..+.+..+ ..
T Consensus 181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t 250 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LT 250 (304)
T ss_dssp HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CS
T ss_pred HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----Cc
Confidence 0113456799999986532 1212222 22222 2245788888899987332 23334444444333 37
Q ss_pred EEEEeCCCCC
Q 022188 141 IVVFTGGDDL 150 (301)
Q Consensus 141 ilv~nk~D~~ 150 (301)
++++||.|..
T Consensus 251 ~iivTh~d~~ 260 (304)
T 1rj9_A 251 GVIVTKLDGT 260 (304)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCccc
Confidence 7899999865
No 223
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.53 E-value=2.1e-07 Score=83.06 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC-----------------CCccccCCCCCcceeeEeEE----EEeeC--CeeEEEE
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTKTCEMKT----TVLKD--GQVVNVI 74 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~li 74 (301)
+...|+|+|++++|||||+|.|+|. ..|..+.+....|.-.-... ....+ ...+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 3468999999999999999999864 22322222222222111100 00012 2468999
Q ss_pred eCCCCCCCCCCcHHHHHHHHH-HHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188 75 DTPGLFDLSAGSEFVGKEIVK-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (301)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~ 130 (301)
||||+++.... ......+.. ++..+ +.+||-+ ...+...+...|..+.+
T Consensus 146 DTeG~~~~~~~-~~~d~~ifal~~lLS----s~~IyN~--~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 146 DTQGTFDSQST-LRDSATVFALSTMIS----SIQVYNL--SQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEECCCSSHHH-HHHHHHHHHHHHHHC----SEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred cCCcccccccc-hhhhHHHHHHHHHHh----hHHHHhh--cccccHHHHHHHHHHHH
Confidence 99999885321 111111211 11112 4444444 34677777776666555
No 224
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.48 E-value=1.3e-06 Score=75.95 Aligned_cols=70 Identities=10% Similarity=0.088 Sum_probs=42.9
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecC----------CCCCHHHHHHHHHHHHhhCcc--
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT----------NRFSQEEETAVHRLPNLFGKN-- 135 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~----------~~~~~~~~~~l~~l~~~~~~~-- 135 (301)
...+.+|||+|-.. +......++++++++|+|+|++ +.-+ -.....++.+.....
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s--~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR--MMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH--HHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH--HHHHHHHHHHHHhcccc
Confidence 35789999999544 2223345689999999999986 1211 122333333332211
Q ss_pred ccCeEEEEEeCCCCC
Q 022188 136 VFDYMIVVFTGGDDL 150 (301)
Q Consensus 136 ~~~~~ilv~nk~D~~ 150 (301)
...|++|+.||+|+.
T Consensus 249 ~~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIF 263 (354)
T ss_dssp SSCEEEEEEECHHHH
T ss_pred CCCeEEEEEECcchh
Confidence 123999999999964
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.34 E-value=4.1e-06 Score=71.31 Aligned_cols=123 Identities=16% Similarity=0.264 Sum_probs=65.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCc-------c----eeeEeEEEEe---------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGV-------T----KTCEMKTTVL--------------- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~~--------------- 65 (301)
++..++|+|++||||||+++.|+|......+. ..... . ..........
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 45789999999999999999998754322221 00000 0 0011110000
Q ss_pred --eCCeeEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188 66 --KDGQVVNVIDTPGLFDLSAGSEFVGKEIV---KCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (301)
Q Consensus 66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (301)
..+....++||.|..... .....++. ..+. .....|+-+++++|++..+.... .++.+.+..+ .
T Consensus 179 ~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g-----~ 248 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I 248 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred HHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----C
Confidence 012345789999986532 22222222 1222 22456887788888654443332 2334433333 3
Q ss_pred EEEEEeCCCCC
Q 022188 140 MIVVFTGGDDL 150 (301)
Q Consensus 140 ~ilv~nk~D~~ 150 (301)
.++++||.|..
T Consensus 249 t~iiiThlD~~ 259 (302)
T 3b9q_A 249 TGLILTKLDGS 259 (302)
T ss_dssp CEEEEECCSSC
T ss_pred CEEEEeCCCCC
Confidence 67889998865
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.4e-07 Score=80.23 Aligned_cols=59 Identities=31% Similarity=0.383 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
+..++|+|++|+|||||+|+|+|.....++.... ..|..... .. .. ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~-~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IH-TS--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EE-ET--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hh-cC--CEEEecCCCcccc
Confidence 4689999999999999999999987655553321 12222111 11 11 3479999998764
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.31 E-value=1.4e-05 Score=68.08 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+..|+|+|++|+||||++..|.+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4578999999999999999998754
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.30 E-value=5.4e-06 Score=72.04 Aligned_cols=123 Identities=16% Similarity=0.264 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCc-------c----eeeEeEEEEe---------------
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGV-------T----KTCEMKTTVL--------------- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~------~~~~~-------t----~~~~~~~~~~--------------- 65 (301)
++..|+|+|++||||||+++.|+|......+. ..... . ..........
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 45789999999999999999998754322211 00000 0 0011110000
Q ss_pred --eCCeeEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-ccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCe
Q 022188 66 --KDGQVVNVIDTPGLFDLSAGSEFVGKEIV---KCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (301)
Q Consensus 66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (301)
..+....++||.|..... .....++. ..+. .....|+-+++++|++..+.... .+..+.+..+ .
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~ 305 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----I 305 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----C
T ss_pred HHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----C
Confidence 012345789999987532 22222222 1121 23467887888888654443332 2333433333 3
Q ss_pred EEEEEeCCCCC
Q 022188 140 MIVVFTGGDDL 150 (301)
Q Consensus 140 ~ilv~nk~D~~ 150 (301)
.++++||.|..
T Consensus 306 t~iiiThlD~~ 316 (359)
T 2og2_A 306 TGLILTKLDGS 316 (359)
T ss_dssp CEEEEESCTTC
T ss_pred eEEEEecCccc
Confidence 67899999865
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.28 E-value=7.9e-06 Score=72.95 Aligned_cols=123 Identities=17% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh-------CCCCccccCCCCCcc-e----------eeEeEE--------------EE
Q 022188 17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKASAGSSGVT-K----------TCEMKT--------------TV 64 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~-------g~~~~~~~~~~~~~t-~----------~~~~~~--------------~~ 64 (301)
.+...|+++|++|+||||+...|. |..+.-....+.... . ...... +.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999987 655432111111000 0 000000 00
Q ss_pred --eeCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEE
Q 022188 65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (301)
Q Consensus 65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (301)
...+..+.||||||.... +.....++..... ...++.+++|+++.... ......+.+....+ ..-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~~l~-----i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNEALP-----LTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHHHSC-----CCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhccCC-----CeEE
Confidence 014567899999997653 2233333333221 23678999999987332 12222233322211 1457
Q ss_pred EEeCCCCCC
Q 022188 143 VFTGGDDLE 151 (301)
Q Consensus 143 v~nk~D~~~ 151 (301)
|+||+|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999653
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.25 E-value=1.1e-05 Score=68.35 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=63.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc-------CCCCCccee-----------eEeEE----------EEeeCCe
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGSSGVTKT-----------CEMKT----------TVLKDGQ 69 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~ 69 (301)
++..|+|+|++|+||||++..|.+......| ......+.. ..... +....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4578999999999999999998753321111 000000000 00000 0001345
Q ss_pred eEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCC
Q 022188 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (301)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~ 149 (301)
.+.|+||||.... ......++...+. ...++.+++|++++.. ..+ +..+...+.. ....-+++||.|.
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence 7899999998753 2222233333321 2246788899988732 122 1222233321 1245577899996
Q ss_pred CC
Q 022188 150 LE 151 (301)
Q Consensus 150 ~~ 151 (301)
..
T Consensus 252 ~~ 253 (296)
T 2px0_A 252 TT 253 (296)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.25 E-value=5.1e-06 Score=70.49 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCc-ce----------eeEeEE--------------EE--e
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-TK----------TCEMKT--------------TV--L 65 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~------g~~~~~~~~~~~~~-t~----------~~~~~~--------------~~--~ 65 (301)
...|+++|++|+||||++..|. |..+.-........ +. ...... .. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987 33322111111000 00 000000 00 0
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEe
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
+.+..+.+|||||.... ..+.....++..... ...+|.+++|+++... .......+.+.+ .. ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----AS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----TC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----hC-CCCEEEEe
Confidence 14567899999997651 112223333322211 1256899999998722 222222333322 11 12778999
Q ss_pred CCCCC
Q 022188 146 GGDDL 150 (301)
Q Consensus 146 k~D~~ 150 (301)
|+|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99965
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.18 E-value=3.4e-06 Score=71.90 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C-cceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
+..++|+|++|+|||||+|+|+ ...+.++.... + .++.... ... . .....++||||+...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~-~-~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIP-F-GKGSFVGDTPGFSKV 229 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEE-E-TTTEEEESSCCCSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEE-c-CCCcEEEECcCcCcC
Confidence 3689999999999999999999 76555553322 1 1221111 111 1 123579999998753
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.13 E-value=1.2e-06 Score=76.09 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC-cccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~-~~~~ 48 (301)
+..++|+|++|+|||||+|+|+|... ..++
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 35899999999999999999999876 5554
No 234
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.12 E-value=6.2e-05 Score=66.82 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCCCcce-----------eeEeEEE--------------Ee-
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSGVTK-----------TCEMKTT--------------VL- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~------~~~~~~~~t~-----------~~~~~~~--------------~~- 65 (301)
++..|+++|++|+||||++..|.+..... .+........ ....... ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999886432111 0000000000 0000000 00
Q ss_pred -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
..+..+.||||||.... +.....++....... .++.+++|+|+... .......+.+....+ ..-+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l~-----i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHTC-----CCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcCC-----ceEEEE
Confidence 13557899999997653 233334443332222 56888999998732 112222233332221 366889
Q ss_pred eCCCCC
Q 022188 145 TGGDDL 150 (301)
Q Consensus 145 nk~D~~ 150 (301)
||.|..
T Consensus 245 TKlD~~ 250 (425)
T 2ffh_A 245 TKLDGD 250 (425)
T ss_dssp ESGGGC
T ss_pred eCcCCc
Confidence 999964
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.07 E-value=7.5e-05 Score=63.95 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.++..|+|+|++|+||||++..|.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988653
No 236
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=2.8e-06 Score=72.37 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEeEEEEeeCCeeEEEEeCCCCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (301)
+..++|+|++|+|||||+|+|.|...+.++.... + .|..... .. . .....++|+||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~-~-~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LK-F-DFGGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EE-C-TTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EE-c-CCCCEEEECcCCCcc
Confidence 3579999999999999999999987765553322 1 1211111 11 1 123479999997664
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.04 E-value=3.2e-05 Score=68.75 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh-------C----------CCCccccCCCCCcceeeEeEE----EEeeCC--eeEEEE
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL-------G----------RKAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNVI 74 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~-------g----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~li 74 (301)
+...|+|+|+.++|||+|+|.|+ | ...|..+.+..+.|+-.-... ....++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 45688999999999999999765 2 233444333333333322211 111133 358999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHH
Q 022188 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (301)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~ 130 (301)
||.|+++.......-..-+.-++..+ +.+||=.. ..+...+...|..+.+
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred eccCCCCcccCccccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 99999987654322111122222223 55555443 3566777666666554
No 238
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.98 E-value=0.00016 Score=61.20 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc------cCCCCCc-ce----------eeEeEEE--------------Ee-
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA------SAGSSGV-TK----------TCEMKTT--------------VL- 65 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~------~~~~~~~-t~----------~~~~~~~--------------~~- 65 (301)
.+..|+++|++|+||||++..|.+...... +...... .. ....... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999875422111 0000000 00 0000000 00
Q ss_pred -eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEE
Q 022188 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (301)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (301)
..+..+.++||||.... +.....++....... .++.+++|+++... .......+.+...+ ...-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~~-----~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhcC-----CCCEEEE
Confidence 13567899999987653 333344444433322 46888899998721 22222223222221 1356889
Q ss_pred eCCCCC
Q 022188 145 TGGDDL 150 (301)
Q Consensus 145 nk~D~~ 150 (301)
||.|..
T Consensus 245 nk~d~~ 250 (295)
T 1ls1_A 245 TKLDGD 250 (295)
T ss_dssp ECGGGC
T ss_pred ECCCCC
Confidence 999964
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.85 E-value=9.7e-06 Score=66.43 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|||||||++.|+|...+.+|
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998764444
No 240
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.82 E-value=1.1e-05 Score=65.51 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 457999999999999999999998764443
No 241
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.77 E-value=1.5e-05 Score=66.31 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3468999999999999999999998764444
No 242
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.77 E-value=1.9e-05 Score=65.07 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3568999999999999999999998765444
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.77 E-value=1.6e-05 Score=66.16 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 3468999999999999999999998764443
No 244
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.77 E-value=1.7e-05 Score=66.20 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 468999999999999999999998764443
No 245
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.76 E-value=1.4e-05 Score=64.46 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 457999999999999999999998764443
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.76 E-value=1.7e-05 Score=65.85 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|||||||++.|+|...+.+|
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998764444
No 247
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.76 E-value=1.6e-05 Score=66.07 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998765444
No 248
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.75 E-value=1.7e-05 Score=64.66 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 468999999999999999999997764433
No 249
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.75 E-value=1.7e-05 Score=66.52 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 468999999999999999999998764443
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.74 E-value=1.7e-05 Score=65.12 Aligned_cols=29 Identities=38% Similarity=0.339 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
-.++|+|++|||||||++.|+|...+.+|
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 46899999999999999999998764443
No 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.74 E-value=1.8e-05 Score=65.03 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 468999999999999999999998764444
No 252
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.74 E-value=1.6e-05 Score=65.27 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3468999999999999999999998764433
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.72 E-value=2e-05 Score=65.06 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 468999999999999999999998764444
No 254
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.72 E-value=1.3e-05 Score=62.62 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+++|+|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999864
No 255
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.71 E-value=2.1e-05 Score=66.05 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 467999999999999999999998765444
No 256
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.71 E-value=2.2e-05 Score=65.49 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3468999999999999999999998764444
No 257
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.69 E-value=2.3e-05 Score=64.91 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457999999999999999999998764443
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.69 E-value=2.4e-05 Score=65.47 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3468999999999999999999998764444
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=1.3e-05 Score=63.86 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..++|+|++|||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998753
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.68 E-value=2.5e-05 Score=59.77 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++..++|+|++|||||||++.|+|.. ..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 34689999999999999999999876 4444
No 261
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.68 E-value=0.0002 Score=63.10 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=46.8
Q ss_pred eCCeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCC--C-------CCHHHHHHHHHHHHhhCcc-
Q 022188 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--R-------FSQEEETAVHRLPNLFGKN- 135 (301)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~-------~~~~~~~~l~~l~~~~~~~- 135 (301)
.++..+.+|||+|-.. +......++.+++++|+|+|+++ . .. .-.....++.......
T Consensus 214 ~~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~n-s~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 214 VDKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTN-RLQEALNLFKSIWNNRW 281 (402)
T ss_dssp ETTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSB-HHHHHHHHHHHHHTCTT
T ss_pred cCCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccc-hHHHHHHHHHHHHhccc
Confidence 5678899999999543 22334556889999999999984 0 11 1122333444333211
Q ss_pred -ccCeEEEEEeCCCCC
Q 022188 136 -VFDYMIVVFTGGDDL 150 (301)
Q Consensus 136 -~~~~~ilv~nk~D~~ 150 (301)
...|++|++||+|+.
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 123899999999964
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.67 E-value=1.8e-05 Score=63.38 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..++|+|++|||||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999865
No 263
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.65 E-value=3e-05 Score=64.04 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFK 46 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~ 46 (301)
+-.++|+|++|+|||||++.|+|...+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4579999999999999999999987543
No 264
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.60 E-value=2.9e-05 Score=61.88 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..|+|+|++|||||||++.|.|..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999753
No 265
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.60 E-value=3.4e-05 Score=65.11 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3468999999999999999999998764443
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.59 E-value=2.9e-05 Score=60.78 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..++|+|++|||||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3679999999999999999998754
No 267
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.59 E-value=2.8e-05 Score=62.88 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 15 PSNGERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 15 ~~~~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
....+..++|+|++|||||||++.|+|...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344567899999999999999999998654
No 268
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=7.7e-05 Score=63.43 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=61.3
Q ss_pred eeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCC-CHHH-HHHHHHHHHhhCccccCeEEEEEeC
Q 022188 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTG 146 (301)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk 146 (301)
..+.+||| ..... .....++.++|++++|+|++++. +... ..++..+.. . +. |+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-~--~~--piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-N--EL--ETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-T--TC--EEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-C--CC--CEEEEEeH
Confidence 37899999 22211 11123578899999999998554 3333 334444433 1 22 99999999
Q ss_pred CCCCCCccccHHHHhcccCCchHHHHHHHcC--CceEEecCCCcccccchhHHHHHHHHHH
Q 022188 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (301)
Q Consensus 147 ~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 205 (301)
+|+... ..+++ ...+....+ ..++. +||+++.++++++..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~~------~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIVK------TSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEEE------CCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEEE------EECCCCcCHHHHHHHhc
Confidence 997644 22211 122222223 34444 78888889998887754
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.58 E-value=3.5e-05 Score=63.72 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+-.++|+|++|+|||||++.|+|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999996
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.57 E-value=2.5e-05 Score=61.48 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
..++|+|++||||||+++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999997653
No 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.57 E-value=4.9e-05 Score=59.84 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
++..|+|+|++||||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999986
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.56 E-value=3.3e-05 Score=65.64 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 3568999999999999999999997764444
No 273
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.56 E-value=4.4e-05 Score=63.75 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++-.++|+|++|||||||++.|+|..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999973
No 274
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.56 E-value=4.9e-05 Score=65.98 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|.|...+.+|
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998765444
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.56 E-value=2.8e-05 Score=62.89 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..++|+|++|||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999854
No 276
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.55 E-value=4.4e-05 Score=63.49 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
++-.++|+|++|+|||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999764
No 277
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.55 E-value=4.7e-05 Score=63.36 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|.. +.+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 4579999999999999999999987 5544
No 278
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.55 E-value=5e-05 Score=65.84 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 467999999999999999999998765544
No 279
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.52 E-value=3.9e-05 Score=61.52 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
.++..|+|+|++|||||||++.|.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999987543
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.51 E-value=2e-05 Score=63.29 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
+-.++|+|++|+|||||++.|+|. .+.+|.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 357999999999999999999998 655443
No 281
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.50 E-value=6.5e-05 Score=65.25 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 3467999999999999999999998765444
No 282
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.50 E-value=6.6e-05 Score=65.27 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 3467999999999999999999998765444
No 283
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.49 E-value=7e-05 Score=65.45 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 467999999999999999999998765444
No 284
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.48 E-value=6.6e-05 Score=65.07 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 468999999999999999999998765444
No 285
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.47 E-value=5e-05 Score=60.84 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
++..|+|+|++|||||||++.|.|.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 286
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.46 E-value=7.7e-05 Score=65.10 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 3468999999999999999999998765544
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.46 E-value=7.2e-05 Score=57.96 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
++-.++|+|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346799999999999999998653
No 288
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.45 E-value=6.1e-05 Score=65.19 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 3468999999999999999999998764444
No 289
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.43 E-value=8.3e-05 Score=64.96 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|||||||++.|+|...+.+|
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 467999999999999999999998765544
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.42 E-value=6.7e-05 Score=62.38 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
.++..++|+|++|+|||||++.|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3457899999999999999999998543
No 291
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.42 E-value=0.00026 Score=59.46 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=58.4
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCc
Q 022188 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (301)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~ 153 (301)
-..||... ...+++...+. .+|+++.|+|+..+.+......-+. ++. +|+++++||+|+.+.
T Consensus 4 ~w~PGhm~------ka~~~~~~~l~----~aDvVl~VvDAr~p~~~~~~~l~~~----l~~---kp~ilVlNK~DL~~~- 65 (282)
T 1puj_A 4 QWFPGHMA------KARREVTEKLK----LIDIVYELVDARIPMSSRNPMIEDI----LKN---KPRIMLLNKADKADA- 65 (282)
T ss_dssp -----CTT------HHHHHHHHHGG----GCSEEEEEEETTSTTTTSCHHHHHH----CSS---SCEEEEEECGGGSCH-
T ss_pred cCCchHHH------HHHHHHHHHHh----hCCEEEEEEeCCCCCccCCHHHHHH----HCC---CCEEEEEECcccCCH-
Confidence 34677543 23445555544 5599999999986666543222222 232 399999999998754
Q ss_pred cccHHHHhcccCCchHHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
...+. +.......+..++. .|+..+.++.+|++.+...+.
T Consensus 66 -~~~~~---------~~~~~~~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 66 -AVTQQ---------WKEHFENQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp -HHHHH---------HHHHHHTTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred -HHHHH---------HHHHHHhcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 22222 22333333445555 566677788888887766654
No 292
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.40 E-value=0.00043 Score=60.51 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHH
Q 022188 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~ 171 (301)
.+.+.+...++..+++++|+|+.+. ...+...+.+.++. .|+++|+||+|+... ....+.+.. .+..
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~~ 124 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMRY 124 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHHH
T ss_pred HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHHH
Confidence 4445555555677899999999832 23344455555443 399999999998754 211111111 0233
Q ss_pred HHHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHH
Q 022188 172 ILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (301)
Q Consensus 172 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 208 (301)
.....+. .++. .||+++.++++|++.+....
T Consensus 125 ~~~~~g~~~~~v~~------iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQLGLKPEDVFL------ISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHTTCCCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEE------EeCCCCcCHHHHHhhhhhhc
Confidence 4455555 4444 78889999999999997754
No 293
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.39 E-value=5.8e-05 Score=65.51 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
.+-.++|+|++|||||||++.|+|...+.+|
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3468999999999999999999998765544
No 294
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=7.8e-05 Score=61.67 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 022188 17 NGERTVVLLGRTGNGKSATGNSIL---GRKAFKA 47 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~---g~~~~~~ 47 (301)
..+..|+|+|++||||||+++.|. |...+.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 345789999999999999999999 7655443
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.38 E-value=7.5e-05 Score=63.35 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..++|+|++|+|||||++.|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999999753
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.37 E-value=9.4e-05 Score=59.27 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..|+|+|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.37 E-value=9.2e-05 Score=58.64 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999754
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.35 E-value=9.2e-05 Score=60.93 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
++..|+|+|++|||||||++.|.|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999764
No 299
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.35 E-value=0.00011 Score=60.52 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh---CCCCcc
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK 46 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~---g~~~~~ 46 (301)
...|+|+|++||||||+++.|. |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999 876543
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.34 E-value=7.7e-05 Score=60.75 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-CCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL-GRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~-g~~ 43 (301)
+..|+|+|++||||||+++.|. |..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 764
No 301
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.33 E-value=0.00015 Score=66.65 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=26.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|+||||||||++.|+|...+..|
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 3568999999999999999999998765555
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.31 E-value=0.00012 Score=62.59 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
..+..|+|+|++|||||||++.|.|...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999997543
No 303
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.31 E-value=8.5e-05 Score=58.57 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
.+++|+|++|+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3589999999999999999998654
No 304
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.29 E-value=0.00089 Score=56.81 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=51.6
Q ss_pred cCCCccEEEEEEecCCC-CCHHH-HHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHHHHHcC
Q 022188 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (301)
Q Consensus 100 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (301)
++.++|++++|+|++++ ++... .+++..+.. .+ . |+++|+||+|+... ..+. .... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~~--~--~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-FK--V--EPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-TT--C--EEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-CC--C--CEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence 46788999999999855 45543 234444433 22 2 89999999998644 2111 1111 233344445
Q ss_pred CceEEecCCCcccccchhHHHHHHHHH
Q 022188 178 NRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (301)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~L~~~l 204 (301)
..++. .||+++.++++|++.+
T Consensus 143 ~~~~~------~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLK------VSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEE------CCTTTCTTHHHHHHHT
T ss_pred CeEEE------EECCCCCCHHHHHhhc
Confidence 55555 5666667777766653
No 305
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.29 E-value=0.00017 Score=66.34 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
.++-.++|+|++|+|||||++.|+|...+.+|.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987655543
No 306
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.27 E-value=0.00015 Score=63.28 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF 45 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~ 45 (301)
+..++|+|++|+|||||+++|+|....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 468999999999999999999987653
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00018 Score=66.94 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
++-.++|+|++|+|||||++.|+|...+.+|.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 46789999999999999999999988766553
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.27 E-value=0.00014 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 309
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.24 E-value=0.0032 Score=49.74 Aligned_cols=68 Identities=6% Similarity=-0.014 Sum_probs=42.5
Q ss_pred CeeEEEEeCCCCCCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCC
Q 022188 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (301)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~ 147 (301)
...+.|||||+... ......+..+ |.+++++..+ ..+......++.+...-......++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~a----d~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMVS----DLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHHC----SEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHHC----CEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 46789999998654 1223333333 8999999988 44433455666665542111112678999999
Q ss_pred CC
Q 022188 148 DD 149 (301)
Q Consensus 148 D~ 149 (301)
+.
T Consensus 141 ~~ 142 (206)
T 4dzz_A 141 IE 142 (206)
T ss_dssp CT
T ss_pred CC
Confidence 84
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.00014 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+..|+|+|++||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999753
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.23 E-value=0.00019 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+..|+|+|++||||||+.+.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999874
No 312
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.21 E-value=0.00014 Score=57.17 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++||||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999985
No 313
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.21 E-value=0.00022 Score=66.39 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
..+-.++|+|++|+|||||++.|+|...+.+|.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987655554
No 314
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.00014 Score=62.63 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAF 45 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~ 45 (301)
+..++|+|++|+|||||++.|+|....
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 357999999999999999999987653
No 315
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.18 E-value=0.0002 Score=62.84 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
+-.++|+|++|+|||||++.|+|...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 46899999999999999999999764
No 316
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=0.00019 Score=62.40 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
...|+|+|++|+|||||+++|+|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 45899999999999999999987543
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.15 E-value=0.00037 Score=55.55 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
....|+|+|++|+||||+.+.|.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999753
No 318
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00017 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999854
No 319
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.13 E-value=0.00024 Score=60.53 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+..|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999874
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.13 E-value=0.00021 Score=57.86 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+-.++|+|++|+|||||++.|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998743
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.10 E-value=0.00028 Score=57.86 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~ 40 (301)
++-.++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45689999999999999999988
No 322
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.09 E-value=0.00032 Score=65.19 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3468999999999999999999998765444
No 323
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.08 E-value=0.00031 Score=65.28 Aligned_cols=30 Identities=33% Similarity=0.482 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 468999999999999999999998764444
No 324
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.08 E-value=0.00035 Score=64.17 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
.+-.++|+|++|+|||||++.|+|...+.+|.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 34689999999999999999999987655553
No 325
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.08 E-value=0.00035 Score=64.14 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 457999999999999999999998765554
No 326
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=0.00025 Score=64.68 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
+..|+|+|+||||||||+++|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35699999999999999999998664
No 327
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.08 E-value=0.00036 Score=64.99 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~~ 49 (301)
+-.++|+|++|+|||||++.|+|...+.+|.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4689999999999999999999987655553
No 328
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.08 E-value=0.00067 Score=59.28 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=59.5
Q ss_pred HHHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCCccccHHHHhcccCCchHHHH
Q 022188 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (301)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~~~~~~~~~~~~~~~~~l~~~ 172 (301)
+.+.+...+.+.+++++|+|+.+.. . .+...+.+.++. +|+++|+||+|+... ....+.+.. .+...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~-~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFN-G---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSG-G---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCC-C---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHHH
Confidence 4444444445669999999998433 2 122233333443 399999999998754 211111111 12334
Q ss_pred HHHcCC---ceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 173 LQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 173 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
....|. .++. .||+++.++++|++.+.....
T Consensus 128 ~~~~g~~~~~v~~------iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCL------VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEE------CBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEE------EECCCCCCHHHHHHHHHhhcc
Confidence 455554 3444 788899999999999987653
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.08 E-value=0.00027 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..|+|+|++|+||||+.+.|.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998644
No 330
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.05 E-value=0.00021 Score=63.36 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
+...|+|+|+||+|||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 346899999999999999999997644
No 331
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.05 E-value=0.00027 Score=61.91 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
++..|+|+|++|+|||||++.|+|...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999997543
No 332
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.02 E-value=0.00031 Score=65.53 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+..++|+|++|+|||||++.|+|...+.+|
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 468999999999999999999998764444
No 333
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.02 E-value=0.00037 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+..|+|+|++||||||+++.|...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34577999999999999999999753
No 334
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.00033 Score=65.32 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 3568999999999999999999998765444
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=0.00038 Score=59.44 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.....|+|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999764
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.00 E-value=0.00034 Score=56.87 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.++..|+|.|++||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45679999999999999999999864
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.97 E-value=0.00044 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 338
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00021 Score=64.22 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~ 47 (301)
.+.+++|+|++|+|||||++.|+|......
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 356899999999999999999998765333
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.00017 Score=55.79 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
..|+|+|++|+|||||++.|++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4699999999999999999997543
No 340
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.97 E-value=0.00027 Score=65.60 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 3568999999999999999999998764444
No 341
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.96 E-value=0.00031 Score=61.37 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
..+++|+|++|+|||||++.|.|...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998654
No 342
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.96 E-value=0.00028 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..++|+|++|+|||||+++|.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998654
No 343
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00057 Score=63.61 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
-.++|+|++|+|||||++.|+|...+.+|
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 35899999999999999999998876555
No 344
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.00028 Score=63.61 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
-.++|+|++|+|||||+++|+|...+.+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 57899999999999999999986554443
No 345
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.00031 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..++|+|++|+|||||++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998754
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00039 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999986
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00041 Score=56.04 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 348
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0061 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+-|++.||||+|||+|.++|.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999999985
No 349
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.90 E-value=0.0083 Score=58.47 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATGNSI 39 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l 39 (301)
+..++|+|+||+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999998
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.90 E-value=0.00048 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+..|+|+|++|+||||+++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999863
No 351
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.88 E-value=0.00039 Score=60.20 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
.+-+++|+|++|+|||||++.|+|...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999998754
No 352
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.88 E-value=0.00042 Score=64.48 Aligned_cols=30 Identities=33% Similarity=0.299 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 568999999999999999999998765444
No 353
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.88 E-value=0.00046 Score=59.07 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
...++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999764
No 354
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.86 E-value=0.00038 Score=67.82 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-+++|+|++|+|||||++.|+|...+.+|
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 458999999999999999999998764443
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.84 E-value=0.00057 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+-|+|+||+|||||||++.|+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999754
No 356
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.84 E-value=0.00069 Score=53.79 Aligned_cols=103 Identities=8% Similarity=0.023 Sum_probs=56.3
Q ss_pred HHHHhccCCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCcc---ccCeEEEEEeCC-CCCCCccccHHHHhcccCCchH
Q 022188 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKPL 169 (301)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~~l 169 (301)
...+..++.+.|++|||||.+++-....+..+..|..++..+ ...|++|+.||. |.... .+..+..+. .. +
T Consensus 116 RplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~--L 190 (227)
T 3l82_B 116 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH--L 190 (227)
T ss_dssp -CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT--G
T ss_pred HHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC--C
Confidence 334445667789999999998432222333332222222211 112899999985 55444 333333222 11 1
Q ss_pred HHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
.. ....+++ .+++|.+|.|+.+-++|+...+.
T Consensus 191 ~~----l~R~W~I----q~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 191 NL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GG----GCSCEEE----EEEETTTCTTHHHHHHHHTTTTT
T ss_pred cC----CCCCEEE----EEeECCCCcCHHHHHHHHHHHHH
Confidence 11 1223332 23788899999999999976553
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.82 E-value=0.00064 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+|+|++|+||||++.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 358
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.80 E-value=0.00086 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
+..|+|+|++|+||||+.+.|.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 359
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.00077 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 360
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.77 E-value=0.00074 Score=51.86 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 022188 20 RTVVLLGRTGNGKSATGNSI 39 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l 39 (301)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 361
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.76 E-value=0.00082 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999864
No 362
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.74 E-value=0.00089 Score=56.42 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.....|+|+|++|||||||.+.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999987643
No 363
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00085 Score=51.49 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 364
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.71 E-value=0.0011 Score=49.93 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999975
No 365
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.0097 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+-|++.||||+|||++.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 56999999999999999999853
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.70 E-value=0.0012 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g 41 (301)
..+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999873
No 367
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.66 E-value=0.0011 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
+..|+|+|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 368
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5699999999999999999984
No 369
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.012 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+-|++.||+|+|||+|.++|.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 367999999999999999999853
No 370
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.64 E-value=0.00073 Score=60.36 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
.+-+++|+|++|+|||||++.|+|...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999999999999999998654
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.63 E-value=0.00093 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.00075 Score=56.44 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 022188 22 VVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~ 42 (301)
++|+|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 373
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.0016 Score=50.77 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+..|+|+|.+|+||||+.+.|.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999753
No 374
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.62 E-value=0.0085 Score=58.26 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+..++|+||||+|||||++.+.+
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 46899999999999999999864
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.61 E-value=0.0015 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...+|+|+|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998743
No 376
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0097 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+-|++.||||+|||++.++|++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36699999999999999999984
No 377
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.59 E-value=0.0013 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 378
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0013 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|+|+|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 56999999999999999999753
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.59 E-value=0.0018 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.435 Sum_probs=21.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 16 ~~~~~~I~lvG~~g~GKStlin~l~g 41 (301)
......|+|.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999999873
No 380
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.57 E-value=0.0011 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..++|+|++|+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999853
No 381
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.57 E-value=0.0013 Score=57.33 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|+|||||||++++|+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357799999999999999987
No 382
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.54 E-value=0.0016 Score=51.00 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+..|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 383
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.51 E-value=0.0069 Score=48.25 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=39.3
Q ss_pred CeeEEEEeCCCC-CCCCCCcHHHHHHHHHHHhccCCCccEEEEEEecCCCCCHHH-HHHHHHHHHhhCccccCeEEEEEe
Q 022188 68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT 145 (301)
Q Consensus 68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~n 145 (301)
...+.++|||+. ... .....+.. +|.+++++..+ ..+... ...++.+....+ .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l~~----aD~viiv~~~~-~~~~~~~~~~~~~l~~~~~----~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALADG----CDLLVIPSTPD-ALALDALMLTIETLQKLGN----NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHHHT----SSEEEEEECSS-HHHHHHHHHHHHHHHHTCS----SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHHHH----CCEEEEEecCC-chhHHHHHHHHHHHHhccC----CCEEEEEE
Confidence 457899999986 441 22333433 38999988877 322222 344455544222 26889999
Q ss_pred CCCCC
Q 022188 146 GGDDL 150 (301)
Q Consensus 146 k~D~~ 150 (301)
+.+..
T Consensus 129 ~~~~~ 133 (209)
T 3cwq_A 129 IIPPY 133 (209)
T ss_dssp SBCCT
T ss_pred ecCCc
Confidence 99854
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.51 E-value=0.0016 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999863
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.51 E-value=0.0012 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
++-.++|+|++|+|||||++.|++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999886543
No 386
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0018 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999853
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.50 E-value=0.0018 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..|+|+|.+|+||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 388
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.49 E-value=0.00014 Score=59.07 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc
Q 022188 21 TVVLLGRTGNGKSATGNSILGRKAF 45 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~~~~ 45 (301)
.++|+|++|+|||||+++|+|...+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~ 53 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIP 53 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccccc
Confidence 4689999999999999999986653
No 389
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.49 E-value=0.001 Score=55.22 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=29.0
Q ss_pred CCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
..+|+++.|+|+..+.+..... +. + ++ +|.++|+||+|+.+.
T Consensus 20 ~~~D~vl~VvDar~P~~~~~~~-l~-l---l~----k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSAYG-VD-F---SR----KETIILLNKVDIADE 61 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSCTT-SC-C---TT----SEEEEEEECGGGSCH
T ss_pred hhCCEEEEEeeCCCCCcCcChH-HH-h---cC----CCcEEEEECccCCCH
Confidence 4559999999998665553311 11 1 12 399999999998754
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.49 E-value=0.0017 Score=49.92 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...|+|+|++|+|||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999999853
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.48 E-value=0.0016 Score=51.49 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999974
No 392
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.47 E-value=0.016 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|.|++|+|||++.+++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 393
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.46 E-value=0.0017 Score=50.53 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999996
No 394
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.45 E-value=0.0019 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g 41 (301)
..+..|+|+|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999974
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.45 E-value=0.0012 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 022188 22 VVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~ 43 (301)
++|+|++|+|||||+++|.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998643
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.44 E-value=0.002 Score=50.93 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
No 397
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 398
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.40 E-value=0.0021 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 399
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.40 E-value=0.0018 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~ 40 (301)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999985
No 400
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.39 E-value=0.0016 Score=56.97 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+..|+|+|++|+|||||++.|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 401
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.39 E-value=0.0015 Score=66.41 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++-+|+|||++|+|||||++.|+|...+.+|
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 3568999999999999999999987664444
No 402
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0022 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~ 40 (301)
+...|+|+|++||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 403
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.0021 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
+..|+|+|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999886
No 404
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.35 E-value=0.0024 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
...|+|+|++|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999987
No 405
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.34 E-value=0.002 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 406
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.33 E-value=0.0016 Score=63.56 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+-+++|+|++|+|||||++.|+|.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999953
No 407
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.33 E-value=0.0025 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.33 E-value=0.0015 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+.+|+|+|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 409
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0024 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|+|++|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999874
No 410
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.31 E-value=0.0019 Score=65.41 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 468999999999999999999998764444
No 411
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.31 E-value=0.0025 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999973
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.30 E-value=0.03 Score=49.63 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|+|++||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999974
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.30 E-value=0.0028 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.28 E-value=0.0021 Score=51.40 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
+..++|+|++|+|||||+..|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.28 E-value=0.0017 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 022188 22 VVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 22 I~lvG~~g~GKStlin~l~g~~ 43 (301)
|+|+|++|+|||||+++|.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999998643
No 416
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.27 E-value=0.0016 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
..++|+|++|+|||||++.|.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998753
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.26 E-value=0.00071 Score=60.04 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.++|+|+||+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999853
No 418
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.26 E-value=0.0025 Score=64.81 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 3568999999999999999999998765544
No 419
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.25 E-value=0.0025 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|+|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999973
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.24 E-value=0.0024 Score=51.34 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 421
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.24 E-value=0.0022 Score=52.19 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..++|+|++|+|||||+..|++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999999974
No 422
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.23 E-value=0.0023 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999863
No 423
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.21 E-value=0.0031 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 567999999999999999974
No 424
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.21 E-value=0.0017 Score=62.35 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..++|+|++|+|||||++.|.|..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45789999999999999999998753
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.18 E-value=0.0029 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|+|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 426
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.18 E-value=0.0038 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
..|+|.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 427
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.18 E-value=0.0029 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.|+|+|++|||||||.+.|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 428
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.18 E-value=0.0072 Score=51.20 Aligned_cols=47 Identities=19% Similarity=0.067 Sum_probs=30.3
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHH--HhhCccccCeEEEEEeCCCCCCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLP--NLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
...+|.+++|+++..+..... .+-+.|. +..+. |.++|+||+|+.+.
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~----~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDI----QPIICITKMDLIED 132 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTC----EEEEEEECGGGCCC
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCC----CEEEEEECCccCch
Confidence 456799999999984433333 2222332 22233 88999999998755
No 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0025 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 17 ~~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+..|+|+|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998743
No 430
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.15 E-value=0.0044 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+.+.|+|+|+|||||+|....|...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999998743
No 431
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.0033 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 432
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.12 E-value=0.0014 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 433
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.09 E-value=0.0034 Score=63.65 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~~~~~ 48 (301)
+-+++|+|++|+|||||++.|+|...+.+|
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 468999999999999999999998765544
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.08 E-value=0.0036 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
...|+|.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.07 E-value=0.0033 Score=50.22 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~ 40 (301)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999986
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.06 E-value=0.0041 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999863
No 437
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.05 E-value=0.0036 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 438
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.05 E-value=0.0048 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|.|++|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998743
No 439
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.014 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
.++|.|++|+||||+++.|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999873
No 440
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.04 E-value=0.0036 Score=48.88 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 441
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.04 E-value=0.0042 Score=49.54 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..|+|+|.+|+||||+.+.|.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.03 E-value=0.0045 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
.+..|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
No 443
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.02 E-value=0.0053 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHh
Q 022188 18 GERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~ 40 (301)
....|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 444
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.02 E-value=0.004 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999974
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.02 E-value=0.0032 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
.+|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999885
No 446
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.02 E-value=0.003 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.+..++|+|++|+|||||+..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.01 E-value=0.0039 Score=49.67 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
+|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 448
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.00 E-value=0.0029 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999986
No 449
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.025 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..+-|++.||+|+|||+|.++|.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3467999999999999999999853
No 450
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.97 E-value=0.0036 Score=47.97 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
..|+|.|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999986
No 451
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.97 E-value=0.0046 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999873
No 452
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.97 E-value=0.0045 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
No 453
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.93 E-value=0.54 Score=45.63 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
..++|+|++|+|||++++.|.+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998643
No 454
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.93 E-value=0.0025 Score=60.80 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..++|+|++|+|||||++.|.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
No 455
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.93 E-value=0.029 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~~ 44 (301)
+..++|+|++|+|||||++.+ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 478999999999999999998 6543
No 456
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.93 E-value=0.0044 Score=49.94 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 022188 21 TVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~ 40 (301)
.|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.91 E-value=0.0025 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..|+|+|++||||||+++.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998754
No 458
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.90 E-value=0.0042 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|+|+|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999999853
No 459
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.89 E-value=0.0054 Score=47.41 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998753
No 460
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.88 E-value=0.0037 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
+..++|+|++|+|||||+++|.+..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4678999999999999999998644
No 461
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.87 E-value=0.0051 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
...|+|+|.+||||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999986
No 462
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.86 E-value=0.0047 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
...|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999985
No 463
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.86 E-value=0.0042 Score=53.87 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
...+|+|++|+||||++++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4789999999999999999874
No 464
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.82 E-value=0.0027 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
+-.++|+|++|||||||++.|+
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4579999999999999998754
No 465
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.81 E-value=0.0055 Score=46.81 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
.+|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.79 E-value=0.0045 Score=53.61 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
.+..++|+|++|+|||||++.+++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 467
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.78 E-value=0.0043 Score=53.06 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|+||+|||||+.+|.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 378999999999999999997
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.68 E-value=0.038 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...|+|.|++|+|||++.+++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 367999999999999999999853
No 469
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.65 E-value=0.0049 Score=56.47 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHH--HhCC
Q 022188 18 GERTVVLLGRTGNGKSATGNS--ILGR 42 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~--l~g~ 42 (301)
.+..++|+|++|||||||++. +.|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999 4454
No 470
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.62 E-value=0.0072 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..++|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998853
No 471
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.61 E-value=0.0072 Score=48.76 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...++|.|++|+||||+++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 472
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.60 E-value=0.0045 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999863
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.60 E-value=0.0085 Score=47.14 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
+..|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999843
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.59 E-value=0.009 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...|+|+|+||+|||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 367899999999999999999743
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.58 E-value=0.0091 Score=51.07 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
..|+|+|++|+|||||...|....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998654
No 476
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.57 E-value=0.006 Score=50.88 Aligned_cols=96 Identities=9% Similarity=0.053 Sum_probs=54.4
Q ss_pred HhccCCCccEEEEEEecCC--CCCHHHHHHH----HHHHHhh-CccccCeEEEEEeCC-CCCCCccccHHHHhcccCCch
Q 022188 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAV----HRLPNLF-GKNVFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPKP 168 (301)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l----~~l~~~~-~~~~~~~~ilv~nk~-D~~~~~~~~~~~~~~~~~~~~ 168 (301)
+..++.+.|++|||||.++ |+. .+..+ .++.+.. -.++ |++|+.||. |.... .+..+..+. ..
T Consensus 204 Wr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~a--pLLVfANKkQDlp~A--ms~~EI~e~-L~-- 274 (312)
T 3l2o_B 204 IQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGR--PLLVLSCISQGDVKR--MPCFYLAHE-LH-- 274 (312)
T ss_dssp HHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTC--CEEEEEEESSTTSCB--CCHHHHHHH-TT--
T ss_pred HHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCC--eEEEEeCCcccccCC--CCHHHHHHH-cC--
Confidence 3345566799999999984 443 22222 3332221 1123 899999964 66544 333332222 11
Q ss_pred HHHHHHHcCCceEEecCCCcccccchhHHHHHHHHHHHHHh
Q 022188 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (301)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 209 (301)
+.. ....+++ .+++|.+|.|+.+-++|+...+.
T Consensus 275 L~~----l~r~W~I----q~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 275 LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGG----GCSCEEE----EEEETTTCTTHHHHHHHHHHHSC
T ss_pred Ccc----CCCcEEE----EecccCCCcCHHHHHHHHHHHHH
Confidence 111 1222322 23788899999999999987764
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.55 E-value=0.0086 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
..|+|+||||+|||||...|....
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 568999999999999999997543
No 478
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.53 E-value=0.083 Score=45.63 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=28.4
Q ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHHhhCccccCeEEEEEeCCCCCCC
Q 022188 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (301)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~nk~D~~~~ 152 (301)
...+|.+++|......++......+-.+.+..+. |.++|+||+|+.+.
T Consensus 128 ~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~~~----~~iivlNK~DL~~~ 175 (358)
T 2rcn_A 128 AANIDQIVIVSAILPELSLNIIDRYLVGCETLQV----EPLIVLNKIDLLDD 175 (358)
T ss_dssp EECCCEEEEEEESTTTCCHHHHHHHHHHHHHHTC----EEEEEEECGGGCCH
T ss_pred HhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhcCC----CEEEEEECccCCCc
Confidence 3567888877665534444432222222233344 78999999998754
No 479
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.50 E-value=0.018 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 022188 21 TVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g~ 42 (301)
.++|.|++|+||||+++.+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988643
No 480
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.48 E-value=0.0082 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 481
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.47 E-value=0.0069 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...++|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998743
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.43 E-value=0.007 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..+++.|++|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999888864
No 483
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.42 E-value=0.14 Score=43.36 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 022188 21 TVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 21 ~I~lvG~~g~GKStlin~l~g 41 (301)
.+++.|++|+|||++++++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999974
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.38 E-value=0.0096 Score=50.15 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999974
No 485
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.36 E-value=0.0094 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999998753
No 486
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.35 E-value=0.008 Score=56.80 Aligned_cols=18 Identities=44% Similarity=0.663 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCcHHHHH
Q 022188 19 ERTVVLLGRTGNGKSATG 36 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStli 36 (301)
+-.++|+|++|||||||+
T Consensus 44 Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHh
Confidence 468999999999999996
No 487
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.35 E-value=0.01 Score=51.81 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 022188 20 RTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~ 40 (301)
...+|+|+||+||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999964
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.34 E-value=0.015 Score=48.88 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...++|.|++|+|||++.++|..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678889999999999999984
No 489
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.32 E-value=0.011 Score=50.06 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...|+|.|++|+|||+++++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 367999999999999999999853
No 490
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.32 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|+|+|++|+||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 491
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.28 E-value=0.011 Score=47.97 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 022188 19 ERTVVLLGRTGNGKSATGNSIL 40 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~ 40 (301)
+..++|+|++|+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999976664
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.27 E-value=0.0093 Score=48.20 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=19.2
Q ss_pred CCCCCceEEEEEcCCCCcHHHHHHHHhC
Q 022188 14 SPSNGERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 14 ~~~~~~~~I~lvG~~g~GKStlin~l~g 41 (301)
.....+..|+|.|++||||||+++.|..
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3334568899999999999999999873
No 493
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.27 E-value=0.011 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g 41 (301)
...|+|.|++|+|||++++++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 36799999999999999999985
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.23 E-value=0.015 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...++|+|++|+|||++.++|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999999854
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.14 E-value=0.013 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...++|.|++|+|||++++++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999999743
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.13 E-value=0.013 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 022188 20 RTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g 41 (301)
..|+|+|++|+|||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999999864
No 497
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.08 E-value=0.016 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILG 41 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g 41 (301)
....|+|.|++|+|||++.+++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999987764
No 498
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.04 E-value=0.014 Score=43.49 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 022188 20 RTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 20 ~~I~lvG~~g~GKStlin~l~g~ 42 (301)
..|.|.|++|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999743
No 499
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.00 E-value=0.011 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhCCC
Q 022188 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (301)
Q Consensus 18 ~~~~I~lvG~~g~GKStlin~l~g~~ 43 (301)
++..++|+|++|+|||||+++|.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999998644
No 500
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.00 E-value=0.014 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhCC
Q 022188 19 ERTVVLLGRTGNGKSATGNSILGR 42 (301)
Q Consensus 19 ~~~I~lvG~~g~GKStlin~l~g~ 42 (301)
...|+|+|++|+||||+...|.+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999988764
Done!