BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022189
(301 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|388499100|gb|AFK37616.1| unknown [Lotus japonicus]
Length = 305
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/301 (65%), Positives = 233/301 (77%), Gaps = 3/301 (0%)
Query: 1 MAFLRRLLTNHALNRT--VGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGAL 58
M L+R L R+ +G S+YLLGS RSYS+ +S E ++ S L K H
Sbjct: 1 MMPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKCHDGF 60
Query: 59 PWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAP 118
P G T+TLRS++A + +++N+KR + Q K + +R +G ++S+SSPGFIYEPY P
Sbjct: 61 PLAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAVGT-QISVSSPGFIYEPYEP 119
Query: 119 REAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTL 178
RE IPFW+RWFTR GW+RTK D+ILELKSAYAI KLRKSGYSK +FY EA +YKEIN L
Sbjct: 120 REKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINAL 179
Query: 179 MANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRND 238
+ANGDK SLRKAVTEKMYSALKNEIKQRE+ W+ V WELIEP+I++RTLRARLIGVD D
Sbjct: 180 IANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRVRTLRARLIGVDPKD 239
Query: 239 LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGR 298
LNKVFVQLTLE AKQKFEAYDSKG VAGDK KEVLVRDIWVFEKS+FHPGAYWRLCGR
Sbjct: 240 LNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCGR 299
Query: 299 I 299
+
Sbjct: 300 L 300
>gi|356576761|ref|XP_003556498.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Glycine max]
Length = 309
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/300 (64%), Positives = 235/300 (78%), Gaps = 2/300 (0%)
Query: 1 MAFLRRLLTNHALNRTVGVSESA-YLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
M +RL L R+ + ES+ YLLGS +SYSS +S E ++ S L K P
Sbjct: 2 MTPFKRLHLVRTLYRSSQIGESSSYLLGSCKSYSSALSNGSEGNFRSFHSHLLKGQDGFP 61
Query: 60 WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPR 119
+ ++TLRS++A + +++N +R + Q KA AQARQ+G ++S+SSPGFIYEPY PR
Sbjct: 62 FAGVKSLTLRSTMAAELSIFMNNRRMLSTQVKASAQARQVGQ-QISLSSPGFIYEPYEPR 120
Query: 120 EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLM 179
+ IPFW+RWFTR G RRTK+DIILELKSAYAIAKLRK+GYSK +FY EA ++YKEINTL+
Sbjct: 121 DKIPFWKRWFTRSGLRRTKNDIILELKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLI 180
Query: 180 ANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDL 239
A GDK +LRKAVTE M+SALKNEIKQRE+ WS V WE++EP++K+RTLRARLIGVDR DL
Sbjct: 181 AKGDKRTLRKAVTENMFSALKNEIKQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDL 240
Query: 240 NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
NK F+QLTLE LAKQKFEAYDSKG VAGDK+KEVLVRDIWVFEKS+FH GA WRLCGRI
Sbjct: 241 NKTFIQLTLEILAKQKFEAYDSKGSVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCGRI 300
>gi|449485732|ref|XP_004157259.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Cucumis sativus]
Length = 302
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/298 (66%), Positives = 231/298 (77%), Gaps = 5/298 (1%)
Query: 4 LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
LR L T L RT + +GSS +YS G++ V ++ Q SS L H A RG
Sbjct: 6 LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62
Query: 64 STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREA 121
M + S++A + L++ + R T Q KAP QARQ LKV++ SPGFIYEPY+PR+
Sbjct: 63 HKMIICSAVAAEFLVFSHGIGIRLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQ 122
Query: 122 IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMAN 181
+PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+AN
Sbjct: 123 LPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIAN 182
Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
GDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL K
Sbjct: 183 GDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEK 242
Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
VFVQLTLE LAKQKFEAY+S+G VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 243 VFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300
>gi|449435699|ref|XP_004135632.1| PREDICTED: uncharacterized protein LOC101211143 [Cucumis sativus]
Length = 302
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/298 (65%), Positives = 230/298 (77%), Gaps = 5/298 (1%)
Query: 4 LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
LR L T L RT + +GSS +YS G++ V ++ Q SS L H A RG
Sbjct: 6 LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62
Query: 64 STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREA 121
M + S++A + ++ + R T Q KAP QARQ LKV++ SPGFIYEPY+PR+
Sbjct: 63 HKMIICSAVAAEFSVFSHGIGIRLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQ 122
Query: 122 IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMAN 181
+PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+AN
Sbjct: 123 LPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIAN 182
Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
GDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL K
Sbjct: 183 GDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEK 242
Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
VFVQLTLE LAKQKFEAY+S+G VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 243 VFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300
>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/274 (69%), Positives = 216/274 (78%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPW 60
MA LRRL AL+RT + LL SSRSY S S E SQ I K H A PW
Sbjct: 1 MALLRRLQAIRALSRTAESRNPSCLLQSSRSYYSDFSNGLEFNSQRIFLSPYKGHNAFPW 60
Query: 61 TRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPRE 120
T GSTMT +SS + ++N+KR T Q +AP QARQMGALKVS+SSPGFIYEPYAPRE
Sbjct: 61 THGSTMTHQSSTPIELSTFVNDKRLLTTQARAPPQARQMGALKVSVSSPGFIYEPYAPRE 120
Query: 121 AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMA 180
IPFWRRWFT+ GWRRTK+DIILELKSAYA++KLRKSGYSK + Y EA++LYKEI+T++A
Sbjct: 121 PIPFWRRWFTKSGWRRTKEDIILELKSAYAVSKLRKSGYSKHQLYKEAIELYKEISTMIA 180
Query: 181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
NGDK SLRKAVTEKMYS LKNEIKQRESMWS V WEL+EP+IK+RTLRARLIGVDR+D +
Sbjct: 181 NGDKNSLRKAVTEKMYSELKNEIKQRESMWSKVYWELVEPVIKIRTLRARLIGVDRSDFS 240
Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
KVF+QLTLE L KQKFEAYDSK VAGDKTKE+
Sbjct: 241 KVFIQLTLELLTKQKFEAYDSKDTVVAGDKTKEL 274
>gi|186526131|ref|NP_001119286.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
Length = 296
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/302 (61%), Positives = 229/302 (75%), Gaps = 7/302 (2%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYL-LGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
M+ +RR T +L +T G ES+ L G RSY S + VPE + ++ S L + H
Sbjct: 1 MSLVRRFQTVRSLLKTAGSRESSSLPFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSV-- 58
Query: 60 WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPR 119
+T LRS++ + L ++NEKR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA R
Sbjct: 59 ----NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALR 114
Query: 120 EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLM 179
E I WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK FY EA++LYK+IN M
Sbjct: 115 EKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQM 174
Query: 180 ANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDL 239
ANG+K ++RK VTE+MYSALKNEIKQRE+MW V WE++EP++K+RTL+ARLIG+DR DL
Sbjct: 175 ANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDL 234
Query: 240 NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
K F+QLTLEFL KQKFEAYD+KG AGDK KEVLVRDIWVFEKSLFH GAYWRLCGRI
Sbjct: 235 KKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGRI 294
Query: 300 KI 301
K+
Sbjct: 295 KL 296
>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]
Length = 314
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/319 (59%), Positives = 232/319 (72%), Gaps = 23/319 (7%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
MA +RR T +L +T G ES+ L G RSY S + VPE
Sbjct: 1 MALVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLYQVPEA 60
Query: 43 YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGAL 102
+ +++ S L + H +T LRS++ +SL + N+KR AT Q KAP Q ++ GA+
Sbjct: 61 HGKSVYSRLYEGH-----NNANTHLLRSTMIAESLPFTNDKRSATTQVKAPPQLQKTGAV 115
Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
+VS+ SPGF+YEPYA +E I WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK
Sbjct: 116 RVSMVSPGFVYEPYALQEKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKN 175
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
FY EA++LYK+IN LMANGDK ++RK VTE+MYSALKNEIKQRE+MW V WE+IEP++
Sbjct: 176 TFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMIEPVV 235
Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG VAGD+ KEVLVRDIWVF
Sbjct: 236 KIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVVAGDRNKEVLVRDIWVF 295
Query: 283 EKSLFHPGAYWRLCGRIKI 301
EKSLFH GAYWRLCGRIK+
Sbjct: 296 EKSLFHTGAYWRLCGRIKL 314
>gi|145334561|ref|NP_001078626.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana]
gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit
Tim44-related protein [Arabidopsis thaliana]
Length = 313
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/319 (58%), Positives = 229/319 (71%), Gaps = 24/319 (7%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
M+ +RR T +L +T G ES+ L G RSY S + VPE
Sbjct: 1 MSLVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLCHVPEA 60
Query: 43 YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGAL 102
+ ++ S L + H +T LRS++ + L ++NEKR AT Q KAP Q ++ GA+
Sbjct: 61 HGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAV 114
Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
+VS+ SPGF+YEPYA RE I WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK
Sbjct: 115 RVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKN 174
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
FY EA++LYK+IN MANG+K ++RK VTE+MYSALKNEIKQRE+MW V WE++EP++
Sbjct: 175 TFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVV 234
Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG AGDK KEVLVRDIWVF
Sbjct: 235 KIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVF 294
Query: 283 EKSLFHPGAYWRLCGRIKI 301
EKSLFH GAYWRLCGRIK+
Sbjct: 295 EKSLFHTGAYWRLCGRIKL 313
>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa]
gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 368 bits (945), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/228 (77%), Positives = 199/228 (87%), Gaps = 5/228 (2%)
Query: 78 LYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
++LN+KR AT + AP QARQMG+LKVSISSPGFIYEPYAPR+ I FWRRWFT+ GWRRT
Sbjct: 5 IFLNDKRSATTKVNAPPQARQMGSLKVSISSPGFIYEPYAPRDTISFWRRWFTKSGWRRT 64
Query: 138 KDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYS 197
K+DIILELK+AYAI KLRK+GYSK KFY EA+ LYKEINTL+ANGDKT+LRKAVTEKMYS
Sbjct: 65 KNDIILELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYS 124
Query: 198 ALKNEIKQRESMW--SSVNWELIEPIIKMRTLRARL---IGVDRNDLNKVFVQLTLEFLA 252
LKNEIKQR+S W S + WE+IEP + +RTLRARL IGVD++DLNKVF+QLTLE
Sbjct: 125 ELKNEIKQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIKT 184
Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 300
KQKFEAYDSKG VAGDK KE+LVR+IWVFEKSLFHPGAYWRLCGRIK
Sbjct: 185 KQKFEAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCGRIK 232
>gi|359487996|ref|XP_002284948.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Vitis
vinifera]
Length = 379
Score = 345 bits (884), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/202 (78%), Positives = 181/202 (89%)
Query: 100 GALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGY 159
GALKVS+ SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK GY
Sbjct: 178 GALKVSMQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGY 237
Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
S+QKFYTEAVDLYKEIN+ +AN K SLRK+VTE MYSALKNEIKQRES W V WE++E
Sbjct: 238 SRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEMVE 297
Query: 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
P++K+RTLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG VAGDK KEVLVRD+
Sbjct: 298 PVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVRDV 357
Query: 280 WVFEKSLFHPGAYWRLCGRIKI 301
WVFE+SLFHPGAYWRLCGRI +
Sbjct: 358 WVFERSLFHPGAYWRLCGRISL 379
>gi|357441561|ref|XP_003591058.1| 39S ribosomal protein L45 [Medicago truncatula]
gi|355480106|gb|AES61309.1| 39S ribosomal protein L45 [Medicago truncatula]
gi|388515325|gb|AFK45724.1| unknown [Medicago truncatula]
Length = 294
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/298 (55%), Positives = 222/298 (74%), Gaps = 13/298 (4%)
Query: 4 LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
L+RL + L + + S +LLGS R+YS+ +S +++ K + +
Sbjct: 3 LKRLQSARNLYHSSQIRPS-HLLGSFRNYSNALSNASDLF---------KPNDGFSFANV 52
Query: 64 STMTLRSSLAPKSLLYLNEKRFATAQPKA--PAQARQMGALKVSISSPGFIYEPYAPREA 121
T+T RS++A + +++N+++ +T+ K AQ R MGA ++ +SSPG IYEPY PRE
Sbjct: 53 KTLTFRSTMAAEFSIFMNDRKMSTSAVKVRPNAQVRPMGA-QICLSSPGIIYEPYEPREK 111
Query: 122 IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMAN 181
IPFW+R FTR GW RTK D+++E+K+AY IA+LRK+GYSK++FY EA+ +YK+INTL+AN
Sbjct: 112 IPFWKRMFTRSGWERTKSDLMMEVKNAYTIARLRKTGYSKKQFYLEAISMYKQINTLIAN 171
Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
GDK SLRKAVTEKM+S LKNEIK RE+ WS V WE++EP++ +RTLRAR++GVD++D NK
Sbjct: 172 GDKHSLRKAVTEKMFSTLKNEIKVRETTWSRVYWEMVEPVVLIRTLRARMLGVDKSDTNK 231
Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
VF Q+TLE LAKQKFEAYDSKG VAGDK KEVLVRDIW+FEK F P +YWRLCGRI
Sbjct: 232 VFYQITLEILAKQKFEAYDSKGSVVAGDKNKEVLVRDIWIFEKPSFLPRSYWRLCGRI 289
>gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 153/196 (78%), Positives = 175/196 (89%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFY 165
+ SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK GYS+QKFY
Sbjct: 1 MQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGYSRQKFY 60
Query: 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR 225
TEAVDLYKEIN+ +AN K SLRK+VTE MYSALKNEIKQRES W V WE++EP++K+R
Sbjct: 61 TEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEMVEPVVKIR 120
Query: 226 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKS 285
TLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG VAGDK KEVLVRD+WVFE+S
Sbjct: 121 TLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVRDVWVFERS 180
Query: 286 LFHPGAYWRLCGRIKI 301
LFHPGAYWRLCGRI +
Sbjct: 181 LFHPGAYWRLCGRISL 196
>gi|226500730|ref|NP_001147017.1| LOC100280627 [Zea mays]
gi|194707278|gb|ACF87723.1| unknown [Zea mays]
gi|195606496|gb|ACG25078.1| tim44-like domain containing protein [Zea mays]
gi|414887907|tpg|DAA63921.1| TPA: Tim44-like domain containing protein [Zea mays]
Length = 303
Score = 331 bits (848), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 146/228 (64%), Positives = 197/228 (86%), Gaps = 4/228 (1%)
Query: 77 LLYLNEKR--FATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGW 134
++++N R A K P AR++G LKV++ SPGF+YEPY+PRE IPFW+RWFT GW
Sbjct: 77 VVHMNHARPMSTAAASKVPVGARKVG-LKVAMMSPGFVYEPYSPRERIPFWKRWFTLSGW 135
Query: 135 RRTKDDIILELKSAYAIAKLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTE 193
RRTK+DIILE+K+AYA+++LRK +GY+K +FY +A+ +YKE+NTLMA+GD +SLRK +TE
Sbjct: 136 RRTKEDIILEMKNAYAVSRLRKKTGYTKNQFYDQALKIYKEVNTLMAHGDTSSLRKILTE 195
Query: 194 KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 253
+M+S +KNE+K+R+SMW+SV+WEL+EP + +RTLRAR+IG+D+NDL+K F+QLTLEF+ K
Sbjct: 196 RMHSTIKNELKRRQSMWNSVHWELVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTK 255
Query: 254 QKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
QKFEAY+SKG V+GDK+KEVLV+DIWVFE+SLFHPGAYWR+CGRI +
Sbjct: 256 QKFEAYNSKGAVVSGDKSKEVLVKDIWVFERSLFHPGAYWRVCGRITL 303
>gi|219884429|gb|ACL52589.1| unknown [Zea mays]
Length = 303
Score = 329 bits (844), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 197/228 (86%), Gaps = 4/228 (1%)
Query: 77 LLYLNEKR--FATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGW 134
++++N R A K P AR++G LKV++ SPGF+YEPY+PRE IPFW+RWFT GW
Sbjct: 77 VVHMNHARPMSTAAASKVPVGARKVG-LKVAMMSPGFVYEPYSPRERIPFWKRWFTLSGW 135
Query: 135 RRTKDDIILELKSAYAIAKLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTE 193
RRTK+DIILE+K+AYA+++LRK +GY+K +FY +A+ +YKE+NTLMA+GD +SLR+ +TE
Sbjct: 136 RRTKEDIILEMKNAYAVSRLRKKTGYTKNQFYDQALKIYKEVNTLMAHGDTSSLREILTE 195
Query: 194 KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 253
+M+S +KNE+K+R+SMW+SV+WEL+EP + +RTLRAR+IG+D+NDL+K F+QLTLEF+ K
Sbjct: 196 RMHSTIKNELKRRQSMWNSVHWELVEPAVSIRTLRARMIGLDKNDLDKAFIQLTLEFVTK 255
Query: 254 QKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
QKFEAY+SKG V+GDK+KEVLV+DIWVFE+SLFHPGAYWR+CGRI +
Sbjct: 256 QKFEAYNSKGAVVSGDKSKEVLVKDIWVFERSLFHPGAYWRVCGRITL 303
>gi|218200130|gb|EEC82557.1| hypothetical protein OsI_27102 [Oryza sativa Indica Group]
gi|222637566|gb|EEE67698.1| hypothetical protein OsJ_25363 [Oryza sativa Japonica Group]
Length = 321
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 140/212 (66%), Positives = 188/212 (88%), Gaps = 2/212 (0%)
Query: 91 KAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYA 150
K P AR++G +KV + SPGF+YEPY+ RE IPFW+RWFT GWRRTK+D+ILE+K+AYA
Sbjct: 111 KVPLGARKVG-MKVVMMSPGFVYEPYSIREPIPFWKRWFTPSGWRRTKEDVILEMKNAYA 169
Query: 151 IAKLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
+++LRK +GY+K++FY +A +YKE+NTLMA+GD +SLRK +TE+M+S +KNE+K+R+SM
Sbjct: 170 VSRLRKKTGYTKKEFYDQAFKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNELKKRQSM 229
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
WSSV+WEL+EP + +RTLRAR+IG+D+NDL+K F+QLTLEF+ KQKFEAY++KG V+GD
Sbjct: 230 WSSVHWELVEPAVCIRTLRARMIGLDKNDLDKAFIQLTLEFVTKQKFEAYNTKGEVVSGD 289
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
K+KEVLV+DIWVFE+SLFHPGAYWR+CGRI +
Sbjct: 290 KSKEVLVKDIWVFERSLFHPGAYWRVCGRITL 321
>gi|357121705|ref|XP_003562558.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Brachypodium distachyon]
Length = 324
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 183/210 (87%), Gaps = 2/210 (0%)
Query: 93 PAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIA 152
P AR++G +KV + SPGF+YEPY+ E I FWRRWFTR GW RTK+DIILE+K+AYA++
Sbjct: 116 PVGARKVG-MKVVMMSPGFVYEPYSLPEPISFWRRWFTRSGWTRTKEDIILEMKNAYAVS 174
Query: 153 KLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+LRK +GY+K++FY +A ++YKE+NTLMA GD +SLRKA+TE+M+S +KNEIK+R+S W
Sbjct: 175 RLRKKTGYTKKQFYNQAFNIYKEVNTLMAQGDTSSLRKALTERMHSTMKNEIKRRQSKWK 234
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
SV+WEL+EP + +RTLRAR+IG+D+NDL+K F+QLTLEF+ KQKFEAY+SKG V+GDK+
Sbjct: 235 SVHWELVEPAVNIRTLRARMIGLDKNDLDKAFIQLTLEFITKQKFEAYNSKGEVVSGDKS 294
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
KEVLV+DIWVFE+SLFHPGA WR+CGRI +
Sbjct: 295 KEVLVKDIWVFERSLFHPGADWRVCGRITL 324
>gi|414887908|tpg|DAA63922.1| TPA: hypothetical protein ZEAMMB73_644873 [Zea mays]
Length = 194
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 160/176 (90%), Gaps = 1/176 (0%)
Query: 127 RWFTRDGWRRTKDDIILELKSAYAIAKLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKT 185
RWFT GWRRTK+DIILE+K+AYA+++LRK +GY+K +FY +A+ +YKE+NTLMA+GD +
Sbjct: 19 RWFTLSGWRRTKEDIILEMKNAYAVSRLRKKTGYTKNQFYDQALKIYKEVNTLMAHGDTS 78
Query: 186 SLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ 245
SLRK +TE+M+S +KNE+K+R+SMW+SV+WEL+EP + +RTLRAR+IG+D+NDL+K F+Q
Sbjct: 79 SLRKILTERMHSTIKNELKRRQSMWNSVHWELVEPAVSIRTLRARMIGLDKNDLDKAFIQ 138
Query: 246 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
LTLEF+ KQKFEAY+SKG V+GDK+KEVLV+DIWVFE+SLFHPGAYWR+CGRI +
Sbjct: 139 LTLEFVTKQKFEAYNSKGAVVSGDKSKEVLVKDIWVFERSLFHPGAYWRVCGRITL 194
>gi|255641370|gb|ACU20962.1| unknown [Glycine max]
Length = 181
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 124/158 (78%), Positives = 142/158 (89%)
Query: 142 ILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201
+L+LKSAYAIAKLRK+GYSK +FY EA ++YKEINTL+A GDK +LRKAVTE M+SALKN
Sbjct: 15 LLQLKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKRTLRKAVTENMFSALKN 74
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
EIKQRE+ WS V WE++EP++K+RTLRARLIGVDR DLNK F+QLTLE LAKQKFEAYDS
Sbjct: 75 EIKQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQLTLEILAKQKFEAYDS 134
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
KG VAGDK+KEVLVRDIWVFEKS+FH GA WRLCGRI
Sbjct: 135 KGSVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCGRI 172
>gi|33146500|dbj|BAC79609.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510250|dbj|BAD31456.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 353
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 167/227 (73%), Gaps = 31/227 (13%)
Query: 91 KAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWR------------------------ 126
K P AR++G +KV + SPGF+YEPY+ RE IPFW+
Sbjct: 111 KVPLGARKVG-MKVVMMSPGFVYEPYSIREPIPFWKSSLPFPNTDPSASFQDRIVRVSSF 169
Query: 127 -----RWFTRDGWRRTKDDIILELKSAYAIAKLRK-SGYSKQKFYTEAVDLYKEINTLMA 180
RWFT GWRRTK+D+ILE+K+AYA+++LRK +GY+K++FY +A +YKE+NTLMA
Sbjct: 170 KLNTKRWFTPSGWRRTKEDVILEMKNAYAVSRLRKKTGYTKKEFYDQAFKIYKEVNTLMA 229
Query: 181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
+GD +SLRK +TE+M+S +KNE+K+R+SMWSSV+WEL+EP + +RTLRAR+IG+D+NDL+
Sbjct: 230 HGDTSSLRKILTERMHSTIKNELKKRQSMWSSVHWELVEPAVCIRTLRARMIGLDKNDLD 289
Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLF 287
K F+QLTLEF+ KQKFEAY++KG V+GDK+KE+++ V E F
Sbjct: 290 KAFIQLTLEFVTKQKFEAYNTKGEVVSGDKSKELIIVWTLVIEHQGF 336
>gi|148907785|gb|ABR17018.1| unknown [Picea sitchensis]
Length = 190
Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/191 (61%), Positives = 147/191 (76%), Gaps = 3/191 (1%)
Query: 112 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK-SGYSKQKFYTEAVD 170
I EPY E I F +R FTR GW+R+K+D+I E K+AYAIAKLRK + YSK KFY EA+
Sbjct: 2 ILEPYKRLEPISFLKRLFTRRGWKRSKEDLISEFKTAYAIAKLRKLTKYSKPKFYEEAIQ 61
Query: 171 LYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRAR 230
LYKEIN+ +A GD+TSLR+ VTE MY+ K EIKQRE+ WS V+WE+IEP +++RTLRAR
Sbjct: 62 LYKEINSHLAQGDRTSLRQLVTENMYTIFKREIKQRETTWSRVHWEMIEPTVRIRTLRAR 121
Query: 231 LIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPG 290
+I VD+N+L+ FVQ+TLE L QKF AYD KG+ + D +VLV DIWVFE+SLF PG
Sbjct: 122 MIAVDKNNLDNAFVQITLEILTNQKFAAYDLKGILITED--SKVLVEDIWVFERSLFQPG 179
Query: 291 AYWRLCGRIKI 301
A WRLCGRI +
Sbjct: 180 ARWRLCGRISL 190
>gi|242051094|ref|XP_002463291.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
gi|241926668|gb|EER99812.1| hypothetical protein SORBIDRAFT_02g041340 [Sorghum bicolor]
Length = 158
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 105/158 (66%), Positives = 145/158 (91%), Gaps = 1/158 (0%)
Query: 145 LKSAYAIAKLRK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
+K+AYA+++LRK +GY+K++FY +A+ +YKE+NTLMA+GD +SLRK +TE+M+S +KNE+
Sbjct: 1 MKNAYAVSRLRKKTGYTKKQFYDQALKIYKEVNTLMAHGDTSSLRKILTERMHSTIKNEL 60
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
K+R+SMW+SV+WEL+EP + +RTLRAR+IG+D+NDL+K F+QLTLEF+ KQKFEAY+SKG
Sbjct: 61 KRRQSMWNSVHWELVEPAVSIRTLRARMIGLDKNDLDKSFIQLTLEFVTKQKFEAYNSKG 120
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
V+GDK+KEVLV+DIWVFE+SLFHPGAYWR+CGRI +
Sbjct: 121 AVVSGDKSKEVLVKDIWVFERSLFHPGAYWRVCGRITL 158
>gi|302793266|ref|XP_002978398.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
gi|300153747|gb|EFJ20384.1| hypothetical protein SELMODRAFT_418250 [Selaginella moellendorffii]
Length = 260
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 141/212 (66%), Gaps = 4/212 (1%)
Query: 91 KAPAQARQMGALKVSISSPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDIILELKSAY 149
+ A ARQ+ + +SSPG I E Y P +PF++RWFTR GWR K ++ LK+AY
Sbjct: 48 RGLATARQV-KMDFYMSSPGLIAEKYRPPPPPLPFFQRWFTRQGWRLKKKYLMDMLKTAY 106
Query: 150 AIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
+AKLRK GY+++ FY EA DLYKEIN L A GD LR+ VTE +S +KN+IKQR+
Sbjct: 107 CLAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQ 166
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
+ +S V+WE++ I MRTL+ RLIG+DR DL+ FVQ+TL + Q F AYD +
Sbjct: 167 AAYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIK 226
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
GD K +LV DIW+FEK L P + WRLCG++
Sbjct: 227 GDLEKPLLVEDIWIFEKHLTRPDSTWRLCGQL 258
>gi|302773644|ref|XP_002970239.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
gi|300161755|gb|EFJ28369.1| hypothetical protein SELMODRAFT_441105 [Selaginella moellendorffii]
Length = 257
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 141/212 (66%), Gaps = 4/212 (1%)
Query: 91 KAPAQARQMGALKVSISSPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDIILELKSAY 149
+ A ARQ+ + +SSPG I E Y P +PF++RWFTR GWR K ++ LK+AY
Sbjct: 45 RGLATARQV-KMDFYMSSPGLIAEKYRPPPPPLPFFQRWFTRQGWRLKKKYLMDMLKTAY 103
Query: 150 AIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
+AKLRK GY+++ FY EA DLYKEIN L A GD LR+ VTE +S +KN+IKQR+
Sbjct: 104 CLAKLRKKHKGYNQKVFYREATDLYKEINKLSAAGDLGKLRRLVTEHFFSVIKNQIKQRQ 163
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
+ +S V+WE++ I MRTL+ RLIG+DR DL+ FVQ+TL + Q F AYD +
Sbjct: 164 AAYSRVHWEMVGQIKLMRTLQGRLIGIDRKDLDNAFVQITLRIQSNQIFAAYDKNNNIIK 223
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
GD K +LV DIW+FEK L P + WRLCG++
Sbjct: 224 GDLEKPLLVEDIWIFEKHLTRPDSTWRLCGQL 255
>gi|147865818|emb|CAN78985.1| hypothetical protein VITISV_038307 [Vitis vinifera]
Length = 489
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/87 (74%), Positives = 76/87 (87%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
LKSAYA+AKLRK GYS+QKFYTEAVDLYKEIN+ +A K SLRK+VTE MYSALKNEIK
Sbjct: 379 LKSAYAVAKLRKIGYSRQKFYTEAVDLYKEINSQIATSAKASLRKSVTENMYSALKNEIK 438
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARL 231
QRES W V WE++EP++K+RTLRAR+
Sbjct: 439 QRESKWHKVYWEMVEPVVKIRTLRARM 465
>gi|145349615|ref|XP_001419224.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579455|gb|ABO97517.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 221
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 100 GALKVSISSPGFIYEPYAPREAIPFWRRWFTRD-GWRRTKDDIILELKSAYAIAKLRKS- 157
G ++V+ +S I EPYA P W T GWR + K AYA++K K
Sbjct: 4 GGVRVAQTSSNLIAEPYAGPPRRPTLAEWATTSKGWRYAYEAATSRAKDAYALSKCAKEV 63
Query: 158 -GYSKQKFYTEAVDLYKEINTLMAN-GDKTSL----RKAVTEKMYSALKNEIKQRE-SMW 210
G++ + F EA +YK IN AN G +L R A T+K S LK E K RE W
Sbjct: 64 RGFTLEGFKQEAKQMYKMINASSANVGHGKTLEHETRHATTDKTQSDLKRERKSRERGGW 123
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKV-FVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+ V+W L E I + + +R RLI + ND N F QLT F KQ+F AYD++G VAGD
Sbjct: 124 ARVDWNL-ESIDECQVVRGRLIMANANDSNGPGFAQLTTRFRGKQRFAAYDARGRLVAGD 182
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
+ + V D WVFE L P A WRL GR+ +
Sbjct: 183 PDEILDVEDFWVFEHGLKIPNARWRLAGRLHM 214
>gi|308807262|ref|XP_003080942.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
[Ostreococcus tauri]
gi|116059403|emb|CAL55110.1| Putative mitochondrial/chloroplast ribosomal protein L45 (ISS)
[Ostreococcus tauri]
Length = 285
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 13/222 (5%)
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPYA-PREAIPFWRRWFTRDGWRRTKDDIILELKSA 148
P A + AR ++++ +S I EPYA P + T GWR D + + K A
Sbjct: 51 PSAASGARS--GIRLNRTSSNVIAEPYAGPLRRPTIVQALTTSLGWRYVVDSALGKAKDA 108
Query: 149 YAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKT-----SLRKAVTEKMYSALKN 201
YA++K K G++ F EA LY+ IN A+ T R A T+KM S LK
Sbjct: 109 YALSKCTKEIKGFTLDGFKAEAKQLYRMINATSASTSGTRALSHETRHATTDKMQSDLKR 168
Query: 202 EIKQRE-SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKV-FVQLTLEFLAKQKFEAY 259
E K RE W +++W L E I + + +R RLI + ND + FVQLT F ++Q+F AY
Sbjct: 169 ERKARELGGWGAIDWSL-EDIEECQVVRGRLIMANPNDTSGAGFVQLTTRFRSRQRFAAY 227
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 301
D KG V+GD + + V D WVFE L P + WRL GR+ +
Sbjct: 228 DGKGRLVSGDPDEVLDVEDFWVFEHGLKIPNSRWRLAGRLHV 269
>gi|307109340|gb|EFN57578.1| hypothetical protein CHLNCDRAFT_51139 [Chlorella variabilis]
Length = 395
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 12/219 (5%)
Query: 93 PAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIA 152
PA + +++S+ SP + EPY +FT GW+ + + KS Y +A
Sbjct: 92 PADMNKAMQMRLSMVSPNLLAEPYRGVPPPQPLTSYFTIRGWKERWQRTLSQFKSMYTLA 151
Query: 153 KLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRES-- 208
K +K G+++ F E+++LY++I L+A G++ SLR+ VT ++S +K ++KQRE
Sbjct: 152 KCKKYVPGFNRNAFKQESLELYRDICRLLAQGERGSLRQLVTPAVFSDMKRQLKQREDPA 211
Query: 209 -----MWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
+S WE + ++ T+ RLI ++ D F QLT+ + Q+F AYD G
Sbjct: 212 AGRACSGTSSGWEPT--VDELTTVHGRLIMINPKDETSGFAQLTVRIPSAQRFAAYDKAG 269
Query: 264 VTVAGDKTKEVLVRDIWVFEKSL-FHPGAYWRLCGRIKI 301
VAGD + + V D WVFE + P WRL GR+ +
Sbjct: 270 KLVAGDPEQSIDVEDYWVFEHAFKASPANRWRLAGRLSV 308
>gi|168056436|ref|XP_001780226.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668376|gb|EDQ54985.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 100/187 (53%), Gaps = 44/187 (23%)
Query: 102 LKVSISSPGFIYEP---------YAPREAI-----PFWRRWFTRDGWRRTKDDIILELKS 147
L+V + SPG I EP + R + F RWFT++GW
Sbjct: 173 LRVYMGSPGVIGEPWKPLPPPLPFLKRACVYSVLRDFGVRWFTKEGW------------- 219
Query: 148 AYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
K+RK ++ IN +A GD+T+LR+ VT+ + +A+K E+K RE
Sbjct: 220 -----KIRKQ------------NIQGMINNALAAGDRTALRQLVTDNVLTAMKKELKHRE 262
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
W+ V+WEL+ P+ +RTL+ RLIG+D+ +++ F QLTL ++ Q+F AYD +G VA
Sbjct: 263 LAWARVHWELVGPLKSIRTLQGRLIGIDQKNMDTAFAQLTLRIVSTQRFAAYDKQGKLVA 322
Query: 268 GDKTKEV 274
GD KEV
Sbjct: 323 GDPEKEV 329
>gi|255081604|ref|XP_002508024.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
gi|226523300|gb|ACO69282.1| mitochondrial protein translocase family [Micromonas sp. RCC299]
Length = 341
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 4/207 (1%)
Query: 95 QARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKL 154
AR G L+ + SPG I +PY P + GW+ I + + +
Sbjct: 114 NARSQG-LRAFLLSPGVIADPYRGPRPWPSLSSFLGTSGWKALVRMISRPVHDVLTLGQC 172
Query: 155 RK-SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE-SMWSS 212
++ G+++ F EA LY++I+ L+A TSLR VTEK + +K E K RE + W
Sbjct: 173 QQIKGFTRDNFKAEAGQLYRQISQLIAENHVTSLRHLVTEKALTDIKREAKTREKAGWGK 232
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
+ WE I + K TL+ R+I + D F Q+T+ F + Q++ AYD+KG VAGD
Sbjct: 233 IVWE-IRDLEKPVTLQGRMIFPNPQDKQMAFAQMTVGFRSHQRYAAYDAKGRLVAGDPNG 291
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ V D+WV E + P A WRL R+
Sbjct: 292 FLPVEDVWVLEHAFKLPNARWRLAARL 318
>gi|384249758|gb|EIE23239.1| hypothetical protein COCSUDRAFT_47558 [Coccomyxa subellipsoidea
C-169]
Length = 264
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 10/212 (4%)
Query: 99 MGALKVSIS--SPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR 155
MGA +V ++ SP I EPY +P W T G R ++ +K+ Y +A+ +
Sbjct: 17 MGASQVKLAPISPNVIAEPYKGELPPLPL-VAWVTPAGLREHWRRMLGGVKAMYTLARCK 75
Query: 156 K--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE-SMWSS 212
K G+S F +A+ LY+E+ +A DKT LR+ +T Y +K ++K RE W
Sbjct: 76 KFVPGFSLPAFKADALRLYEEVCQAIAADDKTLLRQRMTPSAYGTVKAQLKAREEGGWKR 135
Query: 213 VNWELI--EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK 270
V W L + ++ + ARLI + D F QLT+ A KF AYD K VAGD
Sbjct: 136 VAWALARRPQLHELELVHARLIAANPKDARSSFAQLTVRVRAAVKFAAYDGKRRLVAGDP 195
Query: 271 TKEVLVRDIWVFEKSLF-HPGAYWRLCGRIKI 301
+EV V+D+WV E+S P + WR+ GR+ +
Sbjct: 196 EREVPVQDVWVLERSFREEPTSRWRVAGRLSL 227
>gi|303278680|ref|XP_003058633.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
gi|226459793|gb|EEH57088.1| mitochondrial protein translocase family [Micromonas pusilla
CCMP1545]
Length = 335
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 96 ARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIA--- 152
A Q L++ + SP + +PY P A P R TR GW+R + + +A++
Sbjct: 88 AMQGKPLRMYMVSPDLLVDPYRPNRAWPSLRSLATRRGWKRLWRVVTRPMHELHALSMCT 147
Query: 153 KLRKSG-------YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQ 205
K+ KSG ++K+ F A ++Y E+N L+A GD LR + S +K E K
Sbjct: 148 KMIKSGANGKSQAFTKEGFLDTAKEVYAEVNELIARGDHAKLRHLCSGSAASHVKREDKA 207
Query: 206 R-ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
R + W V W+L+E + R L+ARL D + Q T++F ++ F AYD +G
Sbjct: 208 RSQGGWDRVEWKLLEHVQTPRVLQARLCS-PAGDPAVSWAQFTVQFKTRETFAAYDKRGN 266
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHP----GAYWRLCGRI 299
VAGD + ++V D WV E + A WRL R+
Sbjct: 267 LVAGDPEEVLVVEDAWVLEHGVGESNSKKNARWRLAARL 305
>gi|412993869|emb|CCO14380.1| predicted protein [Bathycoccus prasinos]
Length = 218
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 107 SSPGFIYEPYAPREAIPFWR----RWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
SS + EPY R +P R+ G + KD I K AI G+
Sbjct: 17 SSSNALAEPYRGRRKMPSSMTKIPRYLYDIGLNKAKD-IYCTSKVTSAI-----KGFDLN 70
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR-ESMWSSVNWELIEPI 221
F +A LY+EI+ +AN + +S R+ V++K+ LK E K+R ++ WS + W L E
Sbjct: 71 MFKRDASILYEEISRAIANNNLSSCRRDVSDKVMQELKQEQKRRTKNGWSRIRWNLSEKG 130
Query: 222 IK-MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK---EVLVR 277
++ + ++ R++ + DL F Q T+ F ++Q+F AYD VAGD + + V
Sbjct: 131 VENVSVVQGRMMATSQ-DLTNAFAQFTVRFESRQEFGAYDDNDRLVAGDSEEVGANLKVV 189
Query: 278 DIWVFEKS---LFHPGAYWRLCGRI 299
D WVFE+ + + WRLC R+
Sbjct: 190 DHWVFERGIGPIHKTNSRWRLCARL 214
>gi|312385733|gb|EFR30159.1| hypothetical protein AND_00421 [Anopheles darlingi]
Length = 340
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G ++EPY P E +R+G ++ + + + KS AI K+R + +
Sbjct: 101 ISCTGGVFEPYVPPEGDGRMSA-ISREGAKQAIEQLEKKTKSMMAIRKIRSYDEDFDARD 159
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F T+A D+Y + + M +K LR+ VTE+ Y L + + + ++ W+ I+ +
Sbjct: 160 FATQAQDIYIQAHQTMCEKNKYKLREIVTERAYPELMHNVADK-----TIRWQFIKSLEP 214
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R + AR V + +F Q+T+ F ++Q YD G + G +T E + VFE
Sbjct: 215 PRVVHARCTDVITKE--NIFAQVTVRFHSQQLLAIYDRFGRLMHGSETIEKDCLEYVVFE 272
Query: 284 KSLFHPGAYWRLCGRI 299
K L + WRL +I
Sbjct: 273 KHLANEYGVWRLHEKI 288
>gi|359487768|ref|XP_003633648.1| PREDICTED: uncharacterized protein LOC100852568 [Vitis vinifera]
Length = 108
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPW 60
MAF RL + H L RT + +YLLGSSRSYS VP+I +S K H LPW
Sbjct: 1 MAF-GRLRSIHNLYRTAEIRPFSYLLGSSRSYSIVTINVPKINCW-ATSYFYKGHNVLPW 58
Query: 61 TRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGA 101
T STMTL SS+ + + LN+ R T + KAPAQ RQMGA
Sbjct: 59 TCRSTMTLHSSMPTEPWILLNDARLLTTRAKAPAQVRQMGA 99
>gi|296088286|emb|CBI36731.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 1 MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPW 60
MAF RL + H L RT + +YLLGSSRSYS VP+I +S K H LPW
Sbjct: 1 MAF-GRLRSIHNLYRTAEIRPFSYLLGSSRSYSIVTINVPKINCW-ATSYFYKGHNVLPW 58
Query: 61 TRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEP 115
T STMTL SS+ + + LN+ R T + KAPAQ RQM + ++ +I P
Sbjct: 59 TCRSTMTLHSSMPTEPWILLNDARLLTTRAKAPAQVRQMVSYPFFLTDGKYIALP 113
>gi|118782853|ref|XP_312541.3| AGAP002412-PA [Anopheles gambiae str. PEST]
gi|116129764|gb|EAA08051.3| AGAP002412-PA [Anopheles gambiae str. PEST]
Length = 335
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 163
IS G ++EPY P E +R+G ++ + + + KS AI K+R + +
Sbjct: 100 ISCTGGVFEPYIPPEGDGRMSA-ISREGAKQKIEQLEKKTKSMMAIRKIRNYDEDFEPPE 158
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F T A D+Y E + + +K LR+ VTE+ Y L + + + ++ W+ ++ +
Sbjct: 159 FATLAQDIYIEAHKTLCEKNKYKLREIVTERAYPELMHNVADK-----TIRWQFLKSLEP 213
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R + AR V + +F Q+T+ F ++Q YD G + G +T + VFE
Sbjct: 214 PRVVHARCTDVITKE--NIFAQVTVRFHSQQTLAIYDRFGRLMHGSETVAKDCIEYVVFE 271
Query: 284 KSLFHPGAYWRLCGRI 299
K L + WRL +I
Sbjct: 272 KHLANEYGVWRLHEKI 287
>gi|195054150|ref|XP_001993989.1| GH22480 [Drosophila grimshawi]
gi|193895859|gb|EDV94725.1| GH22480 [Drosophila grimshawi]
Length = 353
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+EPY P E + T G ++ + + + KS A+ K+R + +S +
Sbjct: 94 ISCTGGIFEPYVPPEG-DGKKSIITTSGAKQKFEFLEKKSKSMLAVRKIRSYEESFSSDE 152
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F + A D+Y +T MA +K +R+ VTE+ Y + + +K + +++W ++ +
Sbjct: 153 FGSYAQDIYISAHTHMAAKEKYKIREFVTERCYPEMMHNVKDK-----TIHWRFLQSLEP 207
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR V + F Q+T+ F +Q YD G + G E+L +D+
Sbjct: 208 PRLVHARCTEVITKE--NQFAQITVRFHTQQMLAIYDRFGRLMHGS---EILTKDVLEYV 262
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 263 VFEKHISNEYGQWRLHDKI 281
>gi|196000530|ref|XP_002110133.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
gi|190588257|gb|EDV28299.1| hypothetical protein TRIADDRAFT_53791 [Trichoplax adhaerens]
Length = 304
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSG--YSKQK 163
IS+ G I +PY P F+ + G ++ LKS Y +A +++ ++
Sbjct: 94 ISTLGQIIDPYIPLSKKNFF---LSPTGLKQRWQAFKSFLKSTYCVAVIKRKAKPFNISD 150
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F +A +Y N +A+ DKT L TE + L++ K R+ + W+ +
Sbjct: 151 FKLQAEKIYIATNEALASQDKTRLHTLTTEIAFHELRSAFKNRQ-----IKWQCLGTASA 205
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R + R+I ++ D F Q+T++ KQ YD + G + + + VFE
Sbjct: 206 PRIINIRVIPLE--DKTNTFAQITVKLQLKQILAVYDQYNRLLTGSEDRYKQPTEYVVFE 263
Query: 284 KSLFHPGAYWRLCGRI 299
+ L P + WR+CG+I
Sbjct: 264 RHLAKPNSPWRICGKI 279
>gi|240849189|ref|NP_001155742.1| 39S ribosomal protein L45, mitochondrial [Acyrthosiphon pisum]
gi|239789330|dbj|BAH71295.1| ACYPI008057 [Acyrthosiphon pisum]
Length = 330
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 35/209 (16%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDG--------WRRTKDDIILELKSAY-AIAKLRK 156
I++ G I EPY P E DG + K +++ + K + AI K+R+
Sbjct: 99 INNTGSIIEPYVPPEG----------DGKISPISTAGAKQKIELLKKKKDTWQAIRKIRQ 148
Query: 157 SGYSKQ---KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSV 213
+ + +F T+A D+Y + +T M N DK +L + VTEK Y + + I + ++
Sbjct: 149 NEEEFELYPEFITKAQDIYLKAHTTMVNKDKQNLLQYVTEKAYVEMLHNIDNK-----TL 203
Query: 214 NWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
W I+ I R + AR+ + D +F Q+T+ F KQ +D G + G +
Sbjct: 204 RWSFIKSIEPPRVVHARVTDIITQD--NLFAQITVRFHTKQTLSVFDRFGRLIFGS---D 258
Query: 274 VLVRDIW---VFEKSLFHPGAYWRLCGRI 299
V+ +D+ VFEK + + WR+ G+I
Sbjct: 259 VVAKDVLEYVVFEKHIVNQYGMWRIHGKI 287
>gi|384493269|gb|EIE83760.1| hypothetical protein RO3G_08465 [Rhizopus delemar RA 99-880]
Length = 260
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 112 IYEPYAPREAIPF------WRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFY 165
++ Y P E P WR T+ WR K+ + L K + ++ QKF
Sbjct: 64 VFANYIPPETSPSVSDFSNWR--LTK--WRNLKNSVQNLLSVGIIKRKSQFEKWNSQKFL 119
Query: 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL-----IEP 220
EA + YK++N A GD+ L + + MYS LKN+IK R ++V WE +E
Sbjct: 120 AEAGETYKDMNDAFARGDRGMLEEVCLDAMYSNLKNQIKGR----NNVRWEWRYHGDVEA 175
Query: 221 --IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I+ +R + + G+ ++ Q+T+ KQ YD K V GD K V +
Sbjct: 176 PKIVCVRCISS--TGMSKHGF--AIGQVTVRMFTKQSMAVYDKKNRLVGGDPNKIHNVLE 231
Query: 279 IWVFEKSLFHPGAYWRLCGRI 299
VF+K++ + WR+ G++
Sbjct: 232 YVVFQKTISNAEDIWRVYGKV 252
>gi|159483173|ref|XP_001699635.1| hypothetical protein CHLREDRAFT_141592 [Chlamydomonas reinhardtii]
gi|158281577|gb|EDP07331.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 146 KSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
KS YA R S G+SK +D YK +N +A GD VTE+ L E+
Sbjct: 146 KSLYAGVLCRTSIWGFSKSALQQRVLDAYKAVNAALAAGDMALAEPYVTEQTGLRLAGEV 205
Query: 204 KQRESMWSSVNWELI-EP-IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
+R SSV W ++ EP ++ + ++ F Q T ++Q YD+
Sbjct: 206 ARRGR--SSVTWRMVREPKPSDIKLVHGTIVSNPLKQGKLHFAQWTARIPSRQVVAVYDN 263
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHP---------GAYWRLCGRIK 300
+G +AGD KE+ V D WVFE+ + GA WRL R++
Sbjct: 264 RGKLLAGDPDKELEVVDHWVFERPILKAWIAPRPGPSGAEWRLVERLQ 311
>gi|194910892|ref|XP_001982246.1| GG11153 [Drosophila erecta]
gi|190656884|gb|EDV54116.1| GG11153 [Drosophila erecta]
Length = 361
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R +S
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA D+Y + +T MA DK +R+ V+E+ Y + + +K + ++ W+ ++ +
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F ++Q YD G + G E++ +D+
Sbjct: 223 PRVVHARVTEVITKE--NQFAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296
>gi|21355709|ref|NP_651072.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
gi|29611874|sp|Q9VCX3.1|RM45_DROME RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|7300891|gb|AAF56032.1| mitochondrial ribosomal protein L45 [Drosophila melanogaster]
gi|17945151|gb|AAL48635.1| RE09223p [Drosophila melanogaster]
gi|220947926|gb|ACL86506.1| mRpL45-PA [synthetic construct]
gi|220957222|gb|ACL91154.1| mRpL45-PA [synthetic construct]
Length = 361
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R +S
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA D+Y + +T MA DK +R+ V+E+ Y + + +K + ++ W+ ++ +
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F ++Q YD G + G E++ +D+
Sbjct: 223 PRVVHARVTEVITKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296
>gi|302848231|ref|XP_002955648.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
nagariensis]
gi|300259057|gb|EFJ43288.1| hypothetical protein VOLCADRAFT_106869 [Volvox carteri f.
nagariensis]
Length = 296
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 108 SPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTE 167
S G + E Y P + W + RRTK L +++ + G+SK +
Sbjct: 95 SHGSVVERYMPPKPFSHWNPLLDPELDRRTKY-FNFRLYTSFVCYR-SLWGFSKTDLQSR 152
Query: 168 AVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI-EPIIKMRT 226
+ YK +N +A GD VTE M L E+ +R + V W ++ EP R
Sbjct: 153 VLAAYKSVNLAIATGDMRYAEPFVTESMLLRLTGEVTRRGRA-ARVEWRMVSEP--DPRD 209
Query: 227 LRARLIGVDRNDLNK---VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
++ V +N L + FVQ T ++Q YD++G +AGD KE+ V D WVFE
Sbjct: 210 IKLVCGTVVQNPLKQGRLHFVQWTARVPSRQVVAVYDARGNLIAGDPHKELDVVDYWVFE 269
Query: 284 ----KSLFHP-----GAYWRLCGRIK 300
K+L P GA WRL R++
Sbjct: 270 RPILKALVAPRPGPQGAEWRLLERLQ 295
>gi|195502658|ref|XP_002098321.1| GE10319 [Drosophila yakuba]
gi|194184422|gb|EDW98033.1| GE10319 [Drosophila yakuba]
Length = 361
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 14/198 (7%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R + +S
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYEESFSTDD 167
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA D+Y + +T MA +K +R+ V+E+ Y + + +K + +++W+ ++ +
Sbjct: 168 FGAEAQDIYIQAHTHMAAKEKYKIREFVSERCYPEMMHNVKDK-----TIHWKFLQSLEP 222
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK--TKEVLVRDIWV 281
R + AR+ V + F Q+T+ F ++Q YD G + G + TK+VL + V
Sbjct: 223 PRVVHARVTEVITKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGSEIVTKDVL--EYVV 278
Query: 282 FEKSLFHPGAYWRLCGRI 299
FEK + + WRL +I
Sbjct: 279 FEKHISNEYGKWRLHDKI 296
>gi|170042852|ref|XP_001849125.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
gi|167866282|gb|EDS29665.1| 39S ribosomal protein L45 [Culex quinquefasciatus]
Length = 336
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 10/196 (5%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G ++EPY P E +++G ++ + + + KS AI K+R + +
Sbjct: 98 ISCTGGVFEPYIPPEGDGKMSA-VSKEGAKQKFEQLEKKTKSMMAIRKIRSYDDDFEPPE 156
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F A D+Y + + +A +K LR+ VTE+ Y L + + + +++W+ ++ +
Sbjct: 157 FAGYAQDIYIDTHNTLAAKNKYKLREIVTERAYPELIHNVSDK-----TIHWKFLKSLEP 211
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R + AR V D +F Q+T+ F ++Q YD G + G +T + VFE
Sbjct: 212 PRVVHARCTDVISKD--NIFAQVTVRFHSQQILAIYDRFGRLMHGSETIAKDCLEYVVFE 269
Query: 284 KSLFHPGAYWRLCGRI 299
K + + WRL +I
Sbjct: 270 KHVSNEYGVWRLHEKI 285
>gi|125773335|ref|XP_001357926.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura]
Length = 352
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R +S +
Sbjct: 100 ISCTGGIFEAYVPPEGD-GKKSIISSSGAKQKLEFLEKKSKSLIAVRKIRSYDESFSSDQ 158
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA ++Y +TLMA +K +R+ V+E+ Y + + +K + +++W ++ +
Sbjct: 159 FGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVKDK-----TIHWRFLQSLEP 213
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR V + F Q+T+ F +Q YD G + G E+L +D+
Sbjct: 214 PRVVHARCTEVITKENQ--FAQVTVRFHTQQMLAIYDRFGRLMHGS---EILTKDVLEYV 268
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 269 VFEKHISNEYGKWRLHDKI 287
>gi|195158248|ref|XP_002020004.1| GL13752 [Drosophila persimilis]
gi|194116773|gb|EDW38816.1| GL13752 [Drosophila persimilis]
Length = 352
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R +S +
Sbjct: 100 ISCTGGIFEAYVPPEGD-GKKSIISSSGAKQKLEFLEKKSKSLIAVRKIRSYDESFSSDQ 158
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA ++Y +TLMA +K +R+ V+E+ Y + + +K + +++W ++ +
Sbjct: 159 FGAEAQEIYVAAHTLMAAKEKYKIREYVSERCYPEMMHNVKDK-----TIHWRFLQSLEP 213
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR V + F Q+T+ F +Q YD G + G E+L +D+
Sbjct: 214 PRVVHARCTEVITKENQ--FAQVTVRFHTQQMLAIYDRFGRLMHGS---EILTKDVLEYV 268
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 269 VFEKHISNEYGKWRLHDKI 287
>gi|332374642|gb|AEE62462.1| unknown [Dendroctonus ponderosae]
Length = 325
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 34/208 (16%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDG------WRRTKDDII-LELKS--AYAIAKLRK 156
ISS G I+EPY P E DG + K +++ LE KS A+ K+R+
Sbjct: 95 ISSSGDIFEPYVPPEG----------DGKVSPISAQGAKQNLVFLEKKSRTMLAVRKIRQ 144
Query: 157 --SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ +F A D+Y +++ MA DK +L +TE+ Y + + I + ++
Sbjct: 145 YDEDFDGPEFCKSATDIYIKMHECMAANDKETLINYITERAYPEVVHNIDNK-----TLR 199
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
W+ ++ I R + AR V D VF Q+T+ F +Q YD G + G E+
Sbjct: 200 WKYLKDIELPRIVHARNTEVITPD--NVFAQVTVRFHTQQTLAIYDRFGRLMHG---SEI 254
Query: 275 LVRDIW---VFEKSLFHPGAYWRLCGRI 299
L +D+ VFEK L + WR+ +I
Sbjct: 255 LAKDVLEYVVFEKHLSNQYGLWRVHAKI 282
>gi|195331089|ref|XP_002032235.1| GM26453 [Drosophila sechellia]
gi|194121178|gb|EDW43221.1| GM26453 [Drosophila sechellia]
Length = 362
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R +
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKFEFLEKKSKSLMAVRKIRSYDENFRSDD 167
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA D+Y + +T MA DK +R+ V+E+ Y + + +K + ++ W+ ++ +
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F ++Q YD G + G E++ +D+
Sbjct: 223 PRVVHARVTEVITKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296
>gi|194746347|ref|XP_001955642.1| GF18867 [Drosophila ananassae]
gi|190628679|gb|EDV44203.1| GF18867 [Drosophila ananassae]
Length = 360
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R + +S +
Sbjct: 107 ISCTGGIFEAYVPPEG-DGKKSIISSSGAKQKLEFLEKKSKSLMAVRKIRSYEESFSSDE 165
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA ++Y + + MA DK +R+ V+E+ Y + + +K + ++ W ++ +
Sbjct: 166 FGAEAQEIYIKAHQHMAAKDKYQIREYVSERCYPEMMHNVKDK-----TIRWRFLQSLEP 220
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F ++Q YD G + G E+L +D+
Sbjct: 221 PRVVHARVTEVITKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGS---EILTKDVLEYV 275
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 276 VFEKHISNEYGKWRLHDKI 294
>gi|157131210|ref|XP_001655824.1| mitochondrial ribosomal protein, L45, putative [Aedes aegypti]
gi|108871608|gb|EAT35833.1| AAEL012025-PA [Aedes aegypti]
Length = 334
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 18/230 (7%)
Query: 80 LNEKRFATAQPKAPAQARQMGALK--------VSISSPGFIYEPYAPREAIPFWRRWFTR 131
LNEK +Q + + ++ G L IS G ++EPY P E ++
Sbjct: 65 LNEKAEELSQEQMKTRMKERGILPPRPWMERPFYISCTGGVFEPYVPPEG-DGKMSAVSK 123
Query: 132 DGWRRTKDDIILELKSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRK 189
+G ++ + + + KS A+ K+R + +F +A ++Y + + L+ +K LR+
Sbjct: 124 EGAKQKFELLEKKTKSMMAVRKIRSFDDDFEPPEFAAQAQEIYIQAHNLLMEKNKYKLRE 183
Query: 190 AVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLE 249
+TE+ Y + + + + ++ W+ ++ + R + AR V D +F Q+T+
Sbjct: 184 IITERAYPEMMHNVTDK-----TIRWKFLKSLEPPRVVHARCTDVISKD--NIFGQVTVR 236
Query: 250 FLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
F +Q YD G + G + E + VFEK L + WRL +I
Sbjct: 237 FHTQQILAIYDRFGRLMHGSEIVEKDCLEYVVFEKHLSNEYGVWRLHEKI 286
>gi|91086739|ref|XP_971533.1| PREDICTED: similar to GA19976-PA [Tribolium castaneum]
gi|270009728|gb|EFA06176.1| hypothetical protein TcasGA2_TC009023 [Tribolium castaneum]
Length = 319
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 106 ISSPGFIYEPYAPREAI----PFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGY 159
ISS G I+EPY P E P + G ++ + + K+ AI K+R + +
Sbjct: 88 ISSTGGIFEPYVPPEGDGKISPIHMQ-----GAKQKLQFLEKKSKTMMAIRKIRMFEEDF 142
Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
F EA ++Y +++ LMA D ++ VTE+ Y + + ++ + +++W+LI+
Sbjct: 143 DTTAFCKEAENIYVKMHELMAKKDWDNITDYVTERAYPEVIHNVENK-----TIHWKLIK 197
Query: 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
I R + AR V + VF Q T+ F +Q YD G + G E++ +D+
Sbjct: 198 NIELPRVVHARCTDVITKE--NVFGQTTVRFHTQQMLAVYDRFGRLMHGS---EIIAKDV 252
Query: 280 W---VFEKSLFHPGAYWRLCGRI 299
VFEK L + WR+ G+I
Sbjct: 253 LEYIVFEKHLANVYGKWRIQGKI 275
>gi|380017173|ref|XP_003692536.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Apis florea]
Length = 335
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 146 KSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
KS A+ K++ + Y+ + F + +D+YK+ + ++ +K + K VTE Y + + I
Sbjct: 135 KSFMALRKIKGYEDNYTTKTFVEQTLDIYKKAHEVLCTQNKDEILKYVTETAYPIMMHNI 194
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
K + +W V E +EP R + AR+ V F Q+T+ F +Q YD G
Sbjct: 195 KNKTIIWKFV--ESLEP---ARLVHARVTSVITK--GNEFAQVTIRFHTQQILCIYDRFG 247
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ G +T + V D VFEK L + WR+ G+I
Sbjct: 248 RVLLGSETVKKDVLDYIVFEKHLSNEYGIWRIHGKI 283
>gi|195395288|ref|XP_002056268.1| GJ10851 [Drosophila virilis]
gi|194142977|gb|EDW59380.1| GJ10851 [Drosophila virilis]
Length = 362
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 98/198 (49%), Gaps = 14/198 (7%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R + +S
Sbjct: 103 ISCTGGIFEAYVPPEG-DGKKSIISSSGTKQKLEFLEKKSKSLMAVRKIRAYEENFSSDD 161
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F +A ++Y +T MA +K +R+ V+E+ Y + + +K + +++W ++ +
Sbjct: 162 FGVQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVKDK-----TIHWRFLQSLEP 216
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK--TKEVLVRDIWV 281
R + AR+ V + +F Q+T+ F +Q YD G + G + TK+VL + V
Sbjct: 217 PRVVHARVTEVITKE--NLFAQVTVRFHTQQMLAIYDRFGRLMHGSEIVTKDVL--EYVV 272
Query: 282 FEKSLFHPGAYWRLCGRI 299
FEK + + WRL +I
Sbjct: 273 FEKHISNEYGKWRLHDKI 290
>gi|195112778|ref|XP_002000949.1| GI22249 [Drosophila mojavensis]
gi|193917543|gb|EDW16410.1| GI22249 [Drosophila mojavensis]
Length = 362
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS AI K+R + +S
Sbjct: 102 ISCTGGIFEAYVPPEG-DGKKSIISSSGAKQKLEFLEKKSKSLMAIRKIRSYEENFSTDD 160
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F +A ++Y +T MA +K +R+ V+E+ Y + + +K + +++W ++ +
Sbjct: 161 FGAQAQEIYIAAHTHMAAKEKYKIREFVSERCYPEMMHNVKDK-----TIHWRFLQSLEP 215
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F +Q YD G + G E+L +D+
Sbjct: 216 PRVVHARVTEVITKE--NQFAQVTVRFHTQQMLAIYDRFGRLMHGS---EILSKDVLEYV 270
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 271 VFEKHISNEYGKWRLHDKI 289
>gi|401828838|gb|AFQ22727.1| ribosomal protein L45, partial [Chrysomela populi]
Length = 325
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 24/203 (11%)
Query: 106 ISSPGFIYEPYAPREA----IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGY 159
I S G ++EPY P E P ++ G ++ + + K+ AI K+R + +
Sbjct: 92 IHSTGGVFEPYVPPEGDGKISPV-----SKQGAMQSLQFLEKKSKTMMAIRKIRHFEEDF 146
Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
+F EA LY +++ L+A DK +L VTE+ Y + + ++ + ++ W I+
Sbjct: 147 DSPEFCKEATKLYIKMHELLAARDKDNLIDVVTERAYPEVLHNVENK-----TIRWTYIK 201
Query: 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
I R ++AR + + VF Q+T+ F +Q YD G + G E++ +D+
Sbjct: 202 DIELPRIVQARCTDIISKE--NVFAQVTVRFHTQQTLAIYDRFGRLLHGS---EIVAKDV 256
Query: 280 W---VFEKSLFHPGAYWRLCGRI 299
VFEK + + WR+ +I
Sbjct: 257 LEYVVFEKHVANEYGTWRIHAKI 279
>gi|289740307|gb|ADD18901.1| mitochondrial ribosomal protein L45 [Glossina morsitans morsitans]
Length = 355
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 34/208 (16%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT-------KDDIILELKSA--YAIAKLR- 155
IS G I+EPY P E DG R + + LE KS A+ K+R
Sbjct: 97 ISCTGGIFEPYVPPEG----------DGKRSIISAAGAKQKFVFLEKKSKSMLAVRKIRN 146
Query: 156 -KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ +S F A D+Y + MA DK LR+ VTE+ Y + + ++ + +++
Sbjct: 147 YEEDFSTDDFAAAAQDVYIGAHQTMALKDKHKLRELVTERCYPEIMHNVRDK-----TIH 201
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
W ++ + + AR+ V + +F Q+T+ F +Q YD G + G E+
Sbjct: 202 WSFLKSLEPPYVVHARVTDVISKE--NLFAQITVRFHTQQLLAIYDRFGRLMHGS---EI 256
Query: 275 LVRDIW---VFEKSLFHPGAYWRLCGRI 299
+ +D+ VFEK + + WRL +I
Sbjct: 257 VAKDVLEYAVFEKHISNEYGKWRLHDKI 284
>gi|449681483|ref|XP_002159080.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Hydra
magnipapillata]
Length = 275
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 108/274 (39%), Gaps = 22/274 (8%)
Query: 33 SSGVSIVPEIYSQNISSCLCKDHGALP---WTRGSTMTLRSSLAPKSLLYLNEKRFATAQ 89
S+G+S +P +S CLC + +TR ST + A L + K
Sbjct: 14 SAGLSSLP------VSQCLCPSVSSYIFKRYTRKSTSRFPAEDAVTRLEDMARKFQPPPY 67
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAY 149
K P +K + S G I+ Y P P + + R + I +
Sbjct: 68 SKNPLDTPADSGIK--LDSTGIIFVTYVP----PLKKEFIFSIKLVRNQMFINKLFTIFF 121
Query: 150 AIA----KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQ 205
+I KL+ + ++ +F EA + ++NT + DK S + Y +K Q
Sbjct: 122 SIVNIKRKLKPAKFNTVEFAKEAQKRFIDVNTALQKNDKASEMIMIENATYMVVKTLQNQ 181
Query: 206 RESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVT 265
+ + W ++ + K R + A L V NDL + Q+T+ +Q D
Sbjct: 182 FTNPANKPYWRFVKEVEKPRVINAALSAVSENDL---YAQVTVRLHTEQILTIRDRFNRI 238
Query: 266 VAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
V GD V D VFE+ L P WR+CG++
Sbjct: 239 VTGDPKTPRSVIDYVVFERHLPDPYGKWRICGKL 272
>gi|345493995|ref|XP_003427198.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
isoform 1 [Nasonia vitripennis]
gi|345493997|ref|XP_003427199.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
isoform 2 [Nasonia vitripennis]
Length = 297
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 21/215 (9%)
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAY 149
P+ P Q + + +S G I+EPY P E + T G +++ I + S
Sbjct: 78 PQKPWQEKPL-----YLSCTGSIFEPYVPPEGDGKFSAMST-SGAKQSMQFIQKKTTSYR 131
Query: 150 AIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
A+ K++K ++ F + D+Y+ + +AN +K L VTEK+Y + ++ +
Sbjct: 132 AVKKIKKYEEEFNVHDFTDQVNDIYRNAHEALANKEKDKLTDYVTEKLYPEMLYHLENK- 190
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
+ W+ I + R + AR + ND + F Q+T +Q YD G ++
Sbjct: 191 ----IIKWKFIGSLEPTRVVHARCTNLVTNDNH--FAQVTARLHTQQTLAIYDRFGRLMS 244
Query: 268 GDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
G E+L +D+ V EK L + WRL +I
Sbjct: 245 GS---EILTKDVLEYVVLEKHLSNQYGRWRLHAKI 276
>gi|195444564|ref|XP_002069925.1| GK11306 [Drosophila willistoni]
gi|194166010|gb|EDW80911.1| GK11306 [Drosophila willistoni]
Length = 337
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
IS G I+E Y P E + + G ++ + + + KS A+ K+R + +S +
Sbjct: 93 ISCTGGIFEAYVPPEG-DGKKSLISSSGAKQKLEFLEKKSKSLMAVRKIRSYEESFSTDE 151
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F A ++Y +T MA +K +R+ V+E+ Y + + +K + +++W ++ +
Sbjct: 152 FGDHAQEIYIAAHTHMAAREKYKIREFVSERCYPEMMHNVKDK-----TIHWRFLQSLEP 206
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + AR+ V + F Q+T+ F +Q YD G + G E+L +D+
Sbjct: 207 PRVVHARVTEVITKENQ--FAQVTVRFHTQQMLAIYDRFGRLMHGS---EILTKDVLEYV 261
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + + WRL +I
Sbjct: 262 VFEKHISNEYGKWRLHDKI 280
>gi|348533359|ref|XP_003454173.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Oreochromis niloticus]
Length = 315
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 10/198 (5%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ I++PY P E +++G ++ + I S AI K+++ S ++
Sbjct: 81 INIACTAGIFDPYIPPEGDARLST-LSKEGLKQRTEQIRQSAASQLAIRKIKEHDSVFTT 139
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +++ E + + +K L VTE+ Y + R + + ++ W +E +
Sbjct: 140 KDFAEKAQEIFIEAHHALTQFNKEKLHSLVTERCYPEMT-----RGNRYKTIRWRFVESL 194
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
R + AR D ++ Q+T+ +KQ YD G + G + + V + V
Sbjct: 195 EPPRVVHARC--PDMVSKGNLYGQVTVRMHSKQTLAIYDRFGRLMLGSEEQPKDVLEYLV 252
Query: 282 FEKSLFHPGAYWRLCGRI 299
E+ L +P WRL G+I
Sbjct: 253 IERHLINPYGRWRLHGKI 270
>gi|47214080|emb|CAF95337.1| unnamed protein product [Tetraodon nigroviridis]
Length = 223
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 112 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAV 169
I++PY P E +++G ++ + I S AI K++ S +S + F +A
Sbjct: 3 IFDPYIPPEGDARLSS-LSKEGLKQRTEQIRQSAASQLAIRKIKDHDSEFSTKDFAEQAQ 61
Query: 170 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 229
+++ E + + N +K L +TE+ Y + R + + ++ W +E + + + A
Sbjct: 62 EIFIEAHNCLTNFNKEKLHSLLTERCYPEMT-----RGNRYKTIRWRFVESLELPKVVHA 116
Query: 230 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHP 289
R D ++ Q+T+ ++Q YD G + G++ + V + V E+ L +P
Sbjct: 117 RC--PDMVSKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGNEEQPKDVLEYLVLERHLVNP 174
Query: 290 GAYWRLCGRI 299
WRL G+I
Sbjct: 175 YGRWRLHGKI 184
>gi|260829205|ref|XP_002609552.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
gi|229294914|gb|EEN65562.1| hypothetical protein BRAFLDRAFT_285685 [Branchiostoma floridae]
Length = 349
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 43/217 (19%)
Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRR--TKDDIILELKSAYAIA----KLRK 156
+V+IS + +PY P E DG + +K+ + L SA A+A +RK
Sbjct: 80 QVNISCTPEVMDPYIPPEG----------DGRQSVLSKEGAVQRLSSAKALATSQLSIRK 129
Query: 157 -----SGYSKQKFYTEAVDLYKEINTLMAN---GDKTSLRKAVTEKMYSALKNEIKQRES 208
+S + F A ++YKE N +AN ++ L + VTEK Y + K R
Sbjct: 130 IKEFDKEFSTKTFAGTAQEIYKEANNCLANFNTRNRHRLHQLVTEKCYPDMVRGFKFRTI 189
Query: 209 MWSSVNWELIEPIIKMRTLRARLIGVDRNDL---NKVFVQLTLEFLAKQKFEAYDSKGVT 265
W+ E +EP +++ V NDL V+ Q+T+ +Q YD G
Sbjct: 190 RWTF--QESVEP--------PKVVHVRHNDLISKGNVYGQVTVRMHTRQTLAIYDRFGRL 239
Query: 266 VAGDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
GD E LV+D+ VFE+ L +P + WR+ +I
Sbjct: 240 EFGD---ENLVKDVLEYVVFERHLVNPYSSWRMHTKI 273
>gi|339258422|ref|XP_003369397.1| zinc finger protein [Trichinella spiralis]
gi|316966353|gb|EFV50945.1| zinc finger protein [Trichinella spiralis]
Length = 763
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 15/214 (7%)
Query: 89 QPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSA 148
QP P + R + ISS G I++ + P E + R D +++
Sbjct: 523 QPHRPWRER-----PIHISSSGTIFDEFVPDEN-ENKVSLLVKGKGSRLVDSSKHVWRNS 576
Query: 149 YAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 206
A K+R + + F EA+ +Y + ++ + N D L + VTE Y + E+ +
Sbjct: 577 RAGKKIRSYDADFDPVIFIDEALKIYLDAHSALQNRDSDRLHELVTEYAYPEMWEELNLK 636
Query: 207 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 266
S+ W+ +E + R ++ R V + D +F Q+T+ KQK YD G
Sbjct: 637 -----SLRWQFVESVEPARVVQMRTSSVMQED--NIFAQVTVRMHTKQKLAIYDQFGRLY 689
Query: 267 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 300
G++T V + V+EK L + WRL G+I+
Sbjct: 690 MGNETVPRDVLEYIVYEKHLSNLYGKWRLHGKIR 723
>gi|66550524|ref|XP_625034.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial [Apis
mellifera]
Length = 332
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 11/195 (5%)
Query: 107 SSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQKF 164
S+PG I+E Y E + T G ++ + I + KS A+ K++ + Y+ + F
Sbjct: 97 STPG-IFESYIVPEGDGKFSP-ITTTGAKQKIEFINKKSKSFIALRKIKGYEENYTTKTF 154
Query: 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM 224
+ +D+YK+ + + K + K VTE Y + + IK + ++ W+ +E +
Sbjct: 155 LEQTLDIYKKAHEALCTQKKDEILKYVTETAYPIMIHNIKNK-----TIIWKFMESLEPA 209
Query: 225 RTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEK 284
R + AR+ + F Q+T+ F +Q YD G + G +T + V D VFEK
Sbjct: 210 RLVHARVTSIVTQ--GNEFAQVTIRFHTQQILCIYDRFGRVLLGSETVKKDVLDYIVFEK 267
Query: 285 SLFHPGAYWRLCGRI 299
L + WR+ G+I
Sbjct: 268 HLSNEYGIWRIHGKI 282
>gi|432842976|ref|XP_004065531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Oryzias
latipes]
Length = 315
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ +++PY P E +++G ++ + I S AI K+++ S +S
Sbjct: 81 INIACTAGVFDPYIPPEGDARLST-LSKEGLKQRTEQIRQSAASQLAIRKIKEHDSLFST 139
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +++ E + + +K L VTE+ Y + R + ++ W +E +
Sbjct: 140 KTFAEQAQEIFIEAHRALTQFNKEKLHSLVTERCYPEMT-----RGNRHKTIRWSFVESL 194
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
R + AR D ++ Q+T+ +KQ YD G + G + + V + +
Sbjct: 195 EPPRVVHARC--PDMVTKGNLYGQVTVRLHSKQTLAIYDRFGRLMLGSEEQPKDVLEYLI 252
Query: 282 FEKSLFHPGAYWRLCGRI 299
E+ L +P WRL G+I
Sbjct: 253 IERHLINPYGRWRLHGKI 270
>gi|332029058|gb|EGI69072.1| Putative 39S ribosomal protein L45, mitochondrial [Acromyrmex
echinatior]
Length = 337
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 146 KSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
KS AI K++ + F EA+D+Y++ +A+ ++ + K VTE Y + +
Sbjct: 139 KSFMAIRKIKSFDDSFKTSFFLEEALDIYQKAYEALASKNEEEIIKYVTEMAYPKITHN- 197
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
+M +++W+ +E + R + AR V + VF QLT+ F +Q YD G
Sbjct: 198 ----TMNKTIHWKFLESLEPARLVHARTTDVITKE--NVFAQLTVRFHTQQVLAIYDRFG 251
Query: 264 VTVAGDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
+ G E+L +D+ VFEK L + WR+ G+I
Sbjct: 252 HLIQGS---EILRKDVLEYIVFEKHLANEYGIWRIHGKI 287
>gi|321469612|gb|EFX80592.1| hypothetical protein DAPPUDRAFT_303989 [Daphnia pulex]
Length = 327
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 20/203 (9%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSK 161
V +S+ ++E Y P E T G +++ + + + KS A+ K++ + +S
Sbjct: 93 VFVSATSSVFEAYVPPEGDGKLSA-LTLGGAKQSMELLSKKSKSMMAVRKIKSFEEDFST 151
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F EA ++Y + + +A D +L + VTE Y + ++++ +V W+ ++ +
Sbjct: 152 KYFPEEAQEIYLKAHKALAEKDDDTLHQCVTELCYPLMTDDLRS-----CTVRWQFLKSL 206
Query: 222 IKMRTLRARLIGVDRNDLNK--VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
R + AR V +NK +F Q+T+ F +Q YD G + G+ EV+ +D+
Sbjct: 207 EPPRVVHARCTEV----INKENIFSQVTVRFNTQQTLAVYDRFGRLIYGN---EVVAKDV 259
Query: 280 W---VFEKSLFHPGAYWRLCGRI 299
VFEK L + WR+ +I
Sbjct: 260 LEYVVFEKHLANVYGLWRIHEKI 282
>gi|39933380|ref|NP_945656.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris CGA009]
gi|39653005|emb|CAE25747.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
Length = 289
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 106 ISSPGFIYE--PYAPR-EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
+S PG + + P AP + +P RW + + EL+ S + Q
Sbjct: 106 VSMPGTVIDQAPMAPNADVVPPSDRW-------KGIAEPDSELEHGLNAIAQNDSSFDAQ 158
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
F T A Y+ I ANGD+ SLR ++ ++Y + IK RE V +
Sbjct: 159 HFITGAKSAYEMIVMAFANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVS--- 215
Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
+A LI + D + LTL+F+++ D G V G K V + D+W F
Sbjct: 216 ---IEKAELISAELRDRTAM---LTLKFVSQMISATRDKTGAVVDGSPDKVVDITDVWTF 269
Query: 283 EKSLFHPGAYWRLCG 297
+ W+L G
Sbjct: 270 ARDTSSRDPNWKLVG 284
>gi|192288736|ref|YP_001989341.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
gi|192282485|gb|ACE98865.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris TIE-1]
Length = 235
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 106 ISSPGFIYE--PYAPR-EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
+S PG + + P AP + +P RW + + EL+ S + Q
Sbjct: 52 VSMPGTVIDQAPMAPNADVVPPSDRW-------KGIAEPDSELEHGLNAIAQNDSSFDAQ 104
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPII 222
F T A Y+ I ANGD+ SLR ++ ++Y + IK RE V +
Sbjct: 105 HFITGAKSAYEMIVMAFANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFVS--- 161
Query: 223 KMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
+A LI + D + LTL+F+++ D G V G K V + D+W F
Sbjct: 162 ---IEKAELISAELRDRTAM---LTLKFVSQMISATRDKTGAVVDGSPDKVVDITDVWTF 215
Query: 283 EKSLFHPGAYWRLCG 297
+ W+L G
Sbjct: 216 ARDTSSRDPNWKLVG 230
>gi|225707976|gb|ACO09834.1| 39S ribosomal protein L45, mitochondrial precursor [Osmerus mordax]
Length = 315
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 93/199 (46%), Gaps = 12/199 (6%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ +++PY P E +++G ++ + I S A+ K+++ + ++
Sbjct: 81 INIACTAGVFDPYIPPEGDSRLSS-LSKEGLKQRTEQIRQSAASQLAVRKIKEHDTTFTT 139
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
++F A +Y E + + +K L VTE+ Y + R + + ++ W +E +
Sbjct: 140 KEFPGHAQGIYIEAHNALTQFNKEKLHSLVTERCYPEM-----TRANRYKTLRWTFVESL 194
Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW 280
+ + AR V + +L + Q+TL ++Q YD G + G + + V +
Sbjct: 195 EPPKVVHARCPEMVSKGNL---YGQVTLRIHSRQTLAIYDRFGRLMLGSEEEPKDVLEYL 251
Query: 281 VFEKSLFHPGAYWRLCGRI 299
V E+ L +P WRL G+I
Sbjct: 252 VLERHLINPYGRWRLHGKI 270
>gi|307184938|gb|EFN71203.1| Probable 39S ribosomal protein L45, mitochondrial [Camponotus
floridanus]
Length = 201
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 17/158 (10%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
+ S + K ++ Y F EA ++Y++ + +A K L K VTE Y + + +
Sbjct: 5 VNSVFTYGKFIQTSY----FLEEATEIYQKAHEALAAKKKGMLIKYVTESAYPKMIHNL- 59
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
M +++W+ +E + R + AR V + VF QLT+ F +Q YD G
Sbjct: 60 ----MDKTIHWKFLESLEPARVVHARTTDVITKE--NVFAQLTVRFHTQQILAVYDRFGR 113
Query: 265 TVAGDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
+ G E+L +D+ VFEK L + WR+ G+I
Sbjct: 114 LIQGS---EILRKDVLEYIVFEKHLANEYGAWRIHGKI 148
>gi|365896111|ref|ZP_09434198.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365423120|emb|CCE06740.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 233
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 109 PGFIYEPYAPREAI---PFWRRW--FTRDG--WRRTKDDIILELKSAYAIAKLRKSGYSK 161
PG + +P P + + P RW T G R D I+ + S +
Sbjct: 54 PGKLIDPGTPSQTVDVAPMADRWKGLTEPGTALARGLDAIVAQ-----------DSSFDP 102
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F + A Y+ I ANGD+ +LR ++ +Y + + IK RE +
Sbjct: 103 RHFISGARSAYEMIVLAFANGDRRALRDLLSSDVYDSFEAVIKDRERHEQKTETRFVS-- 160
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
+A L+G D D QLT+ F+++ D G V G+ K + DIW
Sbjct: 161 ----IDKAELVGADLRDRT---AQLTVRFVSQMVSVTRDKAGAIVDGNPDKVADITDIWT 213
Query: 282 FEKSLFHPGAYWRLCG 297
F + + W+L G
Sbjct: 214 FARDITSRDPNWKLVG 229
>gi|350414159|ref|XP_003490224.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Bombus impatiens]
Length = 338
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 11/157 (7%)
Query: 146 KSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
KS A+ K++ + YS F +++YK+ + + D+ + + VTE Y + + +
Sbjct: 138 KSFMALRKIKTYEDNYSSDTFRENLLNVYKKAHEALCRKDQDEILQYVTETAYPLMIHNV 197
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSK 262
+ ++ W+ +E + R + AR+ + RN+L F Q+T+ F +Q YD
Sbjct: 198 ANK-----TIVWKFLESLEPARIVHARVTSLISRNNL---FAQVTIRFHTQQLLCIYDRF 249
Query: 263 GVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
G + G +T + V D VFEK + + WR+ G+I
Sbjct: 250 GRVLLGSETVKKDVLDYIVFEKHISNVYGTWRIHGKI 286
>gi|383855866|ref|XP_003703431.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Megachile rotundata]
Length = 330
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
ISS I+E Y E + T G ++ + I + KS +I K+R +S +
Sbjct: 98 ISSTTQIFESYIVPEGDGKFSA-ITTSGAKQKVELIEKKSKSYLSIRKIRSYDDNFSTKT 156
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F EA ++YK+ + +AN D+ L + VTE Y + + +M ++ W+ +E +
Sbjct: 157 FGEEAFEIYKKAHEALANKDEDELLQYVTEHAYPMMTH-----NTMDKTIVWKFLESLEP 211
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R + AR + + F Q+T+ F +Q YD G + G +T + V D VFE
Sbjct: 212 PRIVHARNTSLISKE--NEFGQVTVRFHTQQILCIYDRFGRVLMGSETVKKDVLDYVVFE 269
Query: 284 KSLFHPGAYWRLCGRI 299
K L + WR+ +I
Sbjct: 270 KHLSNVYGKWRIHAKI 285
>gi|115920949|ref|XP_793386.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 338
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 16/211 (7%)
Query: 93 PAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIA 152
P Q Q A ++I+ G +EPY P E T +G ++ + + + A
Sbjct: 90 PGQQYQERA--ITITCTGDFFEPYIPPEG-DGKASSLTTEGAKQRLERVKNVGVTQMAQR 146
Query: 153 KLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
K+R+ ++ F +A +Y + + + + D+ L VTEK Y + + +
Sbjct: 147 KIRQFEPEFTTTDFAWKAQQIYVDAHNALQDFDRHLLHSLVTEKCYPEMIAGFR-----Y 201
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-- 268
++ W+++E I K R + R D + ++ Q+T+ F +Q YD G + G
Sbjct: 202 KTIRWKMLESIEKPRIVHMRC--TDMINKGNIYGQVTVRFHTRQTLAIYDRFGRIMVGSE 259
Query: 269 DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D K+VL + VFEK L H WR+ G+I
Sbjct: 260 DVLKDVL--EYVVFEKHLPHRYGTWRMHGKI 288
>gi|326934094|ref|XP_003213130.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Meleagris
gallopavo]
Length = 341
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 112 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAV 169
I +PY P E +++G ++ + + S A+ K++ +S + F A
Sbjct: 128 IIDPYVPPEGDARMTS-LSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEMAQ 186
Query: 170 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 229
++Y E + +AN +K L VTE+ Y + R + + ++ W +E + R +
Sbjct: 187 EIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RGNRYKTIRWSFVESLEPPRVVHV 241
Query: 230 RLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFH 288
R V+R +L + Q+T+ ++Q YD G + G + V + VFE+ L +
Sbjct: 242 RCTSIVNRGNL---YGQVTVRMHSRQTLAIYDRFGRLMYGGEQLPKDVLEYVVFERYLVN 298
Query: 289 PGAYWRLCGRI 299
P WR+ G+I
Sbjct: 299 PYGTWRMHGKI 309
>gi|410929361|ref|XP_003978068.1| PREDICTED: uncharacterized protein LOC101075867 [Takifugu rubripes]
Length = 658
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 92/198 (46%), Gaps = 10/198 (5%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ +++PY P E +++G ++ + + S AI K+++ S ++
Sbjct: 424 INIACTAGVFDPYIPPEGDARLSS-LSKEGLKQRTEQLRQSAASQLAIRKIKEHDSEFTT 482
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F A +++ E + + N +K L +TE+ Y + R + + ++ W +E +
Sbjct: 483 KIFAERAQEIFIEAHNCLTNFNKEKLHSLLTERCYPEMT-----RGNRYKTIRWRFVESL 537
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
R + AR D ++ Q+T+ ++Q YD G + G + + V + V
Sbjct: 538 ELPRVVHARC--PDMISKGNLYGQVTVRMHSRQTLSIYDRFGRLMLGSEEQPKDVLEYLV 595
Query: 282 FEKSLFHPGAYWRLCGRI 299
E+ L +P WRL G+I
Sbjct: 596 LERHLVNPYGCWRLHGKI 613
>gi|344285951|ref|XP_003414723.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Loxodonta
africana]
Length = 306
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 35/273 (12%)
Query: 47 ISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFA--TAQPKAPAQ------ARQ 98
+ SCL + G W+R + +S + +KRF T++P ++ AR+
Sbjct: 8 VLSCLSRALGC--WSRQPALVAQSMTV---VPVRTKKRFTPPTSKPNYESEKEFIERARK 62
Query: 99 MGAL--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYA 150
G + + ++ G I++ Y P E F+R+G ++ + + S +
Sbjct: 63 AGLVIPPERLERAIHLACTGGIFDSYVPPEGDARMSS-FSREGMKQRTERFKKNVASQLS 121
Query: 151 IAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRES 208
I K+++ + + + F +A D+Y E + + N D L TE + + ++K +
Sbjct: 122 IRKIKEYDANFKTKDFPEKAKDIYVEAHLCLNNSDHDRLHTLATELCFPDMVWDLKYKTV 181
Query: 209 MWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG 268
WS V E +EP ++ + L+ + V+ Q+T+ +Q YD G + G
Sbjct: 182 RWSFV--ESLEPPQVVQVRCSNLV-----NQGNVYGQVTVRMHTRQILAIYDRFGRLMYG 234
Query: 269 --DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D K+VL + VFEK L +P WR+ G+I
Sbjct: 235 QEDVPKDVL--EYVVFEKHLTNPYGSWRMHGKI 265
>gi|296202660|ref|XP_002748546.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Callithrix
jacchus]
Length = 329
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 104 VSISSPGFIYEPYAPREA---IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SG 158
+ ++ I++ Y P E I F +R+G ++ + + + S AI K+++ +
Sbjct: 99 IHLACSAGIFDAYVPPEGDARISF----LSREGLKQKTERMKKTMASQVAIRKIKEHDAS 154
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F +A D++ E + + N D L VTE + + +IK + WS V E +
Sbjct: 155 FKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKCKTVRWSFV--ESL 212
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLV 276
EP ++ + ++ N+ N ++ Q+T+ +Q YD G + G D K+VL
Sbjct: 213 EPSHVVQVRCSSMV----NESN-MYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL- 266
Query: 277 RDIWVFEKSLFHPGAYWRLCGRI 299
+ VFEK L +P WR+ G+I
Sbjct: 267 -EYVVFEKQLVNPYGSWRMHGKI 288
>gi|73853856|ref|NP_001027509.1| 39S ribosomal protein L45, mitochondrial [Xenopus (Silurana)
tropicalis]
gi|82249321|sp|Q4QQQ4.1|RM45_XENTR RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|67867480|gb|AAH98093.1| hypothetical protein mgc108142 [Xenopus (Silurana) tropicalis]
Length = 309
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ I++PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +L+ + + D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189
Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 279
R ++ R V + +L + Q+T+ KQ YD G + G ++ ++VL +
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQSLTIYDRFGRVMCGSEEPRDVL--EY 244
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ + +P WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264
>gi|327275540|ref|XP_003222531.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Anolis
carolinensis]
Length = 316
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 10/198 (5%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++IS I+E Y P E +++G ++ + S AI K++ +S
Sbjct: 88 INISCTAGIFESYVPPEGDARISS-LSKEGLKQRAQQVKQTAASQLAIRKIKDYDPDFST 146
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N +K + VTE + + R + + ++ W +E +
Sbjct: 147 KTFAEKAQDIFIEAHNNLTNFNKEKMHALVTEYCFPDMV-----RGNRYKTIRWSFLESL 201
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
R ++ R + D ++ Q+T+ ++Q YD G + G + V + V
Sbjct: 202 EPPRVVQVRCPTMVSKD--NLYGQVTVRMHSRQTLAIYDRFGRLMYGGEQIPKDVLEYLV 259
Query: 282 FEKSLFHPGAYWRLCGRI 299
FE+ L +P WRL G+I
Sbjct: 260 FERHLVNPYGQWRLHGKI 277
>gi|449277053|gb|EMC85360.1| 39S ribosomal protein L45, mitochondrial, partial [Columba livia]
Length = 261
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 12/197 (6%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 163
++S I +PY P E ++DG ++ + + S A+ K++ +S +
Sbjct: 61 LASTSEIMDPYVPPEGDARLSS-LSKDGLKQKMEKLKQSATSQLALRKIKDHDPDFSTKT 119
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F +A +++ E + +AN +K L VTE+ Y + R + + ++ W +E +
Sbjct: 120 FPEKAQEIFIEAHNSLANFNKQKLHSLVTERCYPEM-----VRGNRYRTIRWSFVESLEP 174
Query: 224 MRTLRARLIGV-DRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVF 282
R + R + +R +L + Q+T+ +Q YD G + G + V + VF
Sbjct: 175 PRVVHIRCDSLMNRGNL---YGQVTVRMHTRQTLAIYDRFGRLMYGGEQMPKDVLEYVVF 231
Query: 283 EKSLFHPGAYWRLCGRI 299
E+ L +P WR+ G+I
Sbjct: 232 ERYLVNPYGTWRMHGKI 248
>gi|354474802|ref|XP_003499619.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Cricetulus griseus]
Length = 306
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 31/239 (12%)
Query: 74 PKSLLYLNEKRFATAQPKAPAQARQMGAL--------KVSISSPGFIYEPYAPREAIPFW 125
P+ Y EK F AR+ G + + ++ I++PY P E
Sbjct: 45 PREPKYKTEKEFLE-------HARKAGLVIPPEKLERPIHLACTAGIFDPYVPPEGDARM 97
Query: 126 RRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGD 183
+++G + D + S A+ K+++ + + F EA D++ E + + N D
Sbjct: 98 SS-LSKEGLTQRTDRFKKNVASQLAVRKIKEFDPNFKTKDFAEEAKDIFIEAHLCLNNSD 156
Query: 184 KTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIG-VDRNDLNKV 242
L VTE + + ++K + +V W +E + + + R G V++++L
Sbjct: 157 HDRLHTLVTEHCFPDMVWDLK-----YKTVRWSFVESLEPAQVVHVRSSGLVNQSNL--- 208
Query: 243 FVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ Q+T+ +Q YD G + G D K+VL + VFE+ L +P WR+ +I
Sbjct: 209 YGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLVNPYGSWRMHAKI 265
>gi|452820975|gb|EME28011.1| alkane 1-monooxygenase isoform 2 [Galdieria sulphuraria]
Length = 957
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 107 SSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKF 164
+S I +PY P W+ W+ D +R I+ L+ A+A ++K + ++F
Sbjct: 767 TSANGIVDPYDPSLE---WKPWYV-DVTKR----ILASLRDVQAMAVMQKQIGRFKVKEF 818
Query: 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM 224
EA +Y+++N A G+K L + T + + R + V W+L + +++
Sbjct: 819 KEEAFQIYRQVNEAFAAGNKKLLFQYTTPLTFKEFCIALDGRPPLEKHV-WKLGK-LVES 876
Query: 225 RTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEK 284
+ +R R+ + + Q+TL + Y+SKG + GD K + + VF++
Sbjct: 877 QVVRTRVFRWRSGNKRDICAQITLRLYLSRALGVYNSKGDRIVGDANKLEHITEYVVFQR 936
Query: 285 SLFHPGAY-WRLCGRIKI 301
SL+ + W+ GRI+I
Sbjct: 937 SLYLLEDFSWKYVGRIQI 954
>gi|148235359|ref|NP_001079503.1| 39S ribosomal protein L45, mitochondrial [Xenopus laevis]
gi|29611839|sp|P59480.1|RM45_XENLA RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|27696384|gb|AAH43883.1| Mrlp45 protein [Xenopus laevis]
Length = 309
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ I +PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +++ + + N D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189
Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 279
R ++ R V + +L + Q+T+ KQ YD G + G ++ ++VL +
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQTLIVYDRFGRVMCGSEEPRDVL--EY 244
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ + +P WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264
>gi|452820974|gb|EME28010.1| alkane 1-monooxygenase isoform 1 [Galdieria sulphuraria]
Length = 995
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 93/198 (46%), Gaps = 13/198 (6%)
Query: 107 SSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKF 164
+S I +PY P W+ W+ D +R I+ L+ A+A ++K + ++F
Sbjct: 805 TSANGIVDPYDPSLE---WKPWYV-DVTKR----ILASLRDVQAMAVMQKQIGRFKVKEF 856
Query: 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM 224
EA +Y+++N A G+K L + T + + R + V W+L + +++
Sbjct: 857 KEEAFQIYRQVNEAFAAGNKKLLFQYTTPLTFKEFCIALDGRPPLEKHV-WKLGK-LVES 914
Query: 225 RTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEK 284
+ +R R+ + + Q+TL + Y+SKG + GD K + + VF++
Sbjct: 915 QVVRTRVFRWRSGNKRDICAQITLRLYLSRALGVYNSKGDRIVGDANKLEHITEYVVFQR 974
Query: 285 SLFHPGAY-WRLCGRIKI 301
SL+ + W+ GRI+I
Sbjct: 975 SLYLLEDFSWKYVGRIQI 992
>gi|12847837|dbj|BAB27727.1| unnamed protein product [Mus musculus]
Length = 284
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++ I++PY P E +++G + + + S AI K+R+ + +
Sbjct: 81 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFEANFKT 139
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + ++K + +V W +E +
Sbjct: 140 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 194
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
+ + R G+ + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 195 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 250
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ L +P WR+ +I
Sbjct: 251 VVFERHLMNPYGSWRMHAKI 270
>gi|157786676|ref|NP_001099304.1| 39S ribosomal protein L45, mitochondrial [Rattus norvegicus]
gi|149054036|gb|EDM05853.1| mitochondrial ribosomal protein L45 (predicted) [Rattus norvegicus]
Length = 306
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++ I++PY P E +++G + + + + S AI K+++ + +
Sbjct: 76 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNVASQLAIRKIKEFDANFKT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + E+K + +V W +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWELK-----YKTVRWSFVESL 189
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
+ + R G+ + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 190 EPAQVVHVRSSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ L +P WR+ +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265
>gi|389613177|dbj|BAM19959.1| mitochondrial ribosomal protein L45, partial [Papilio xuthus]
Length = 157
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 179 MANGDKTSLRKAVTEKMYSALKNEIKQRESMWS-SVNWELIEPIIKMRTLRARLIGVDRN 237
+AN DK SLR VTEK Y R + W +++W+ +E + R + AR +
Sbjct: 4 IANHDKESLRLYVTEKAYPEF------RHNTWEKTIHWKFLESLEPPRVVHARCTDIVSK 57
Query: 238 DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW---VFEKSLFHPGAYWR 294
+ +F Q+T+ F +Q+ YD G + G E+L +D+ VFEK L + WR
Sbjct: 58 E--NIFGQVTVRFHTRQQLAVYDRFGRLLHGS---EILAKDVLEYIVFEKHLANMYGTWR 112
Query: 295 LCGRI 299
+ +I
Sbjct: 113 IHAKI 117
>gi|18043288|gb|AAH20130.1| Mitochondrial ribosomal protein L45 [Mus musculus]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++ I++PY P E +++G + + + S AI K+R+ + +
Sbjct: 76 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDTNFKT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + ++K + +V W +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
+ + R G+ + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ L +P WR+ +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265
>gi|91974901|ref|YP_567560.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris BisB5]
gi|91681357|gb|ABE37659.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB5]
Length = 235
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 154 LRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSV 213
++ S + F T A Y+ I ANGD+ +LR ++ ++Y + IK RE
Sbjct: 96 VQDSSFDANHFLTGAKSAYEMIVMAFANGDRRALRDLLSTEVYDSFDAAIKDREK----- 150
Query: 214 NWELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAG 268
R R + +D+ +L V QLT++F+++ D G V G
Sbjct: 151 ---------NERKTETRFVAIDKAELLGAEVREHTAQLTVKFVSQMISVTRDKAGAIVDG 201
Query: 269 DKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
+ K + D+W F + + W+L G
Sbjct: 202 NPDKVADITDVWTFARDISSRDPNWKLVG 230
>gi|307214389|gb|EFN89460.1| Probable 39S ribosomal protein L45, mitochondrial [Harpegnathos
saltator]
Length = 334
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 130 TRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQKFYTEAVDLYKEI-NTLMANGDKTS 186
T++G ++ + + KS AI K++ + F EA+D+YK+ L A +
Sbjct: 119 TKEGAKQKYSFLKKKSKSLLAIRKIKSFDDMFKTSHFIEEAIDIYKKAYEALAAKEGEEK 178
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L + VTE Y + + + M +++W+ +E + R + R V + VF Q+
Sbjct: 179 LLQYVTETAYPKMIHNM-----MDKTIHWKFLESLEPARVVHMRTTDVITKE--NVFAQI 231
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
T+ F +Q YD G + G E+L +D+ VFEK L + WR+ G+I
Sbjct: 232 TVRFHTQQILAIYDRFGRLIQGS---EILRKDVLEYIVFEKHLANEYGIWRIHGKI 284
>gi|13385418|ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial [Mus musculus]
gi|29611870|sp|Q9D0Q7.1|RM45_MOUSE RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|12847109|dbj|BAB27440.1| unnamed protein product [Mus musculus]
gi|26349471|dbj|BAC38375.1| unnamed protein product [Mus musculus]
gi|74180509|dbj|BAE34190.1| unnamed protein product [Mus musculus]
gi|148684129|gb|EDL16076.1| mitochondrial ribosomal protein L45 [Mus musculus]
Length = 306
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++ I++PY P E +++G + + + S AI K+R+ + +
Sbjct: 76 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDANFKT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + ++K + +V W +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
+ + R G+ + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ L +P WR+ +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265
>gi|302191653|ref|NP_001180514.1| 39S ribosomal protein L45, mitochondrial [Gallus gallus]
Length = 296
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 10/190 (5%)
Query: 112 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAV 169
I +PY P E +++G ++ + + S A+ K++ +S + F A
Sbjct: 83 IIDPYVPPEGDARVTS-LSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQ 141
Query: 170 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 229
++Y E + +AN +K L VTE+ Y + R + + ++ W +E + R +
Sbjct: 142 EIYVEAHNSLANFNKQKLHSLVTERCYPDM-----VRGNRYKTIRWSFVESLEPPRVVHV 196
Query: 230 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHP 289
R V + ++ Q+T+ +Q YD G + G + V + VFE+ L +P
Sbjct: 197 RCTSV--VNQGNLYGQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVLEYVVFERYLVNP 254
Query: 290 GAYWRLCGRI 299
WR+ G+I
Sbjct: 255 YGTWRMHGKI 264
>gi|73966162|ref|XP_850801.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Canis lupus
familiaris]
Length = 303
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 35/270 (12%)
Query: 50 CLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRF--ATAQPKAPAQ------ARQMGA 101
CL K G W+R + +S++ + +KRF T +PK ++ AR+ G
Sbjct: 11 CLSKALGW--WSRQPVLVTQSTVV---VPVRTKKRFTPPTYEPKYKSEKEFMEYARKAGL 65
Query: 102 L--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAK 153
+ + ++ I++ Y P E ++G + + + ++ S +I K
Sbjct: 66 VIPPERLERPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRK 124
Query: 154 LRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+R+ + + F +A D++ E + + N D L VTE + + +IK +
Sbjct: 125 IREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK-----YK 179
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNK--VFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+V W +E + + ++ R N LN+ ++ Q+T+ +Q YD G + G
Sbjct: 180 TVRWSFVESLEPPQVVQVRC----SNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ V + VFEK L +P WR+ G+I
Sbjct: 236 EDVPRDVLEYVVFEKHLVNPYGSWRMHGKI 265
>gi|328872019|gb|EGG20389.1| hypothetical protein DFA_07513 [Dictyostelium fasciculatum]
Length = 310
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 34/215 (15%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGW-------RRTKDDIILELKSAYAIAKLRK 156
+ I SPG I+EP P +P + T W RT I + +KS + L +
Sbjct: 106 IYIQSPGQIFEPNLP---VPLTKILVTPSSWIDTIRFYYRTYGSIGV-IKSK--LKALTQ 159
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL------------KNEIK 204
++ + F +A +++ +N +AN D +++ T YS L KN +K
Sbjct: 160 DQFAVKSFVEQAKEIFINLNKAIANSDTDEVKELATIHYYSILAKNTQFDKVDGKKNNVK 219
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
S W+ EL +P KM +RA I + F Q+ +EF KQ D+K
Sbjct: 220 ---SEWTC---ELDKP--KMLWIRAGQIRTTAAGGMEYFGQICVEFSGKQSLTRTDTKKN 271
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ + K+ +D++VFE+ L + WR+C +
Sbjct: 272 IIIS-QVKDAEFKDVYVFERCLSSLPSSWRVCQTV 305
>gi|340717667|ref|XP_003397301.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Bombus terrestris]
Length = 338
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ YS F +++YK+ + + D+ + + VTE Y L + ++ + ++ W
Sbjct: 150 EDNYSSDTFRENLLNIYKKAHEALCRKDQDEILQYVTETAYPLLIHNVENK-----TIVW 204
Query: 216 ELIEPIIKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +E + R + AR+ + +++L F Q+T+ F +Q YD G + G +T
Sbjct: 205 KFLESLEPARIVHARVTNLITKSNL---FAQVTIRFHTQQLLCIYDRFGRVLLGSETVRK 261
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
V D VFEK + + WR+ G+I
Sbjct: 262 DVLDYIVFEKHISNVYGTWRIHGKI 286
>gi|367475400|ref|ZP_09474862.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365272291|emb|CCD87330.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 233
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 13/189 (6%)
Query: 109 PGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEA 168
PG +P P F D WR + + AIA S + + F T A
Sbjct: 54 PGAPIDPAGPSTGAEFGA---PNDRWRGVAEAGTPLARGLDAIAASDPS-FDPRHFLTGA 109
Query: 169 VDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLR 228
Y+ I ANGD+ +LR ++ ++Y + + IK RE +
Sbjct: 110 RSAYEMIVLAFANGDRRALRDLLSSEVYDSFDSVIKDREKNEQKTETRFVS------IDT 163
Query: 229 ARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFH 288
A L+G + D QLT+ F+++ D G V G+ K + DIW F +
Sbjct: 164 AELVGAEARDRT---AQLTVRFVSQMISVTRDKMGNIVDGNPDKVADITDIWTFARDTGS 220
Query: 289 PGAYWRLCG 297
W+L G
Sbjct: 221 RDPNWKLVG 229
>gi|115522403|ref|YP_779314.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris BisA53]
gi|115516350|gb|ABJ04334.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisA53]
Length = 233
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
SG+ Q F + A Y+ I ANGD+ +L+ ++ ++Y + + I++RE
Sbjct: 96 DSGFDAQHFLSGARGAYEMIVLAFANGDRRALKDLLSSEVYDSFEAAIREREK------- 148
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDK 270
R + +D+ +L V QLT+ F+++ D G V G+
Sbjct: 149 -------NDHKTETRFVSIDKAELVTAEVRDRSAQLTVRFVSQMITVTRDKTGAIVDGNP 201
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLCG 297
K + D+W F + + W+L G
Sbjct: 202 DKVADITDVWTFARDVASRDPNWKLVG 228
>gi|431890717|gb|ELK01596.1| 39S ribosomal protein L45, mitochondrial [Pteropus alecto]
Length = 304
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 123/274 (44%), Gaps = 41/274 (14%)
Query: 49 SCLCKDHGALPWTRGSTMTLRS-SLAPKSLLYLNEKRFATA--QPKAPA------QARQM 99
SCL + G+ W+R S + +S ++ P +KRF +PK + Q+R+
Sbjct: 10 SCLSRALGS--WSRQSVLVTQSIAVVP----VRTKKRFTPPLYEPKYKSEKEFIEQSRKA 63
Query: 100 GAL--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAI 151
G + + ++ I++ Y P E +++G + + + + S +I
Sbjct: 64 GVVIPPERLERPIHLACTAGIFDAYVPPEGDARVSS-LSKEGLAQKTERLKKNVASQLSI 122
Query: 152 AKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
K+R+ + + + F +A D++ E + + N D L TE + + ++K
Sbjct: 123 RKIREYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLATENCFPDMVEDLK----- 177
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNK--VFVQLTLEFLAKQKFEAYDSKGVTVA 267
+ +V W +E + + ++ R + LN+ ++ Q+T+ +Q YD G +
Sbjct: 178 YKTVRWSFVESLEPPQVVQVRCSSM----LNQSNLYGQVTVRMHTRQTLAIYDRFGRLMY 233
Query: 268 G--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
G D K+VL + VFEK L +P WR+ G+I
Sbjct: 234 GQEDVPKDVL--EYVVFEKHLTNPYGSWRMHGKI 265
>gi|86747526|ref|YP_484022.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
gi|86570554|gb|ABD05111.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris HaA2]
Length = 235
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 23/197 (11%)
Query: 106 ISSPGFIYE--PYAPR-EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
+S PG + + P AP + +P RW G + L + + + S +
Sbjct: 52 VSMPGSVIDQSPIAPSADVVPPSDRW---KGIAEPDSPLEHGLNAVFT----QDSSFDAN 104
Query: 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE--SMWSSVNWELIEP 220
F + A Y+ I ANGD+ +L+ ++ ++Y + + IK RE + + + IE
Sbjct: 105 HFLSGAKGAYEMIVMAFANGDRRALKDLLSSEVYESFEAAIKDREKNELKTETRFVAIE- 163
Query: 221 IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW 280
+A L+G + D QLT++F+++ D G V G K + D+W
Sbjct: 164 -------KAELLGAEVRDH---VAQLTVKFVSQMISVTRDKAGAVVDGSPDKVADITDVW 213
Query: 281 VFEKSLFHPGAYWRLCG 297
F + + W+L G
Sbjct: 214 TFARDISSRDPNWKLVG 230
>gi|316931716|ref|YP_004106698.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
gi|315599430|gb|ADU41965.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris DX-1]
Length = 258
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 22/210 (10%)
Query: 94 AQARQMGALKVS---ISSPGFIYE--PYAPR-EAIPFWRRWFTRDGWRRTKDDIILELKS 147
A AR M + K IS PG + + P AP + +P RW + + EL+
Sbjct: 60 AAARDMISGKQDNNVISMPGTVIDQAPIAPNADVVPPSDRW-------KGIAEPDSELEH 112
Query: 148 AYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
S + + F A Y+ I ANGD+ SLR ++ ++Y + IK RE
Sbjct: 113 GLNAIAQHDSSFDARHFVDGAKSAYEMIVMAFANGDRRSLRDLLSSEVYESFDAAIKDRE 172
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
V + +A LI + D + LTL+F+++ D G V
Sbjct: 173 KNDLKVESRFVA------IEKAELISAELRDRTAM---LTLKFVSQMISATRDKTGAVVD 223
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
G K + D+W F + W+L G
Sbjct: 224 GSPDKVTDITDVWTFARDTSSRDPNWKLVG 253
>gi|198413804|ref|XP_002125945.1| PREDICTED: similar to Mitochondrial ribosomal protein L45 [Ciona
intestinalis]
Length = 400
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLM-------ANGDKTS--LRKAVTEKMYSALKN 201
I K R + +++F EA D+Y + + L+ N + T L+ VTE Y+ +
Sbjct: 133 IVKKRVDNFHRKRFPAEAQDIYIKAHNLLNTPNWTIVNQEDTEERLQNLVTEHAYTDMVK 192
Query: 202 EIKQRESMWSSVNW-ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 260
+ + +W W E +EP R +R R + N N + Q+T+ F +KQ YD
Sbjct: 193 GLDSKTVIWK---WNESLEP---PRVVRIRASPMITN--NNYYGQVTVRFHSKQTLAIYD 244
Query: 261 SKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
G + G + V + VFE+ + HP WR+ G+I
Sbjct: 245 RFGRLMYGSPDEARNVLEFVVFERHISHPYGCWRIHGKI 283
>gi|374571852|ref|ZP_09644948.1| hypothetical protein Bra471DRAFT_00235 [Bradyrhizobium sp. WSM471]
gi|374420173|gb|EHQ99705.1| hypothetical protein Bra471DRAFT_00235 [Bradyrhizobium sp. WSM471]
Length = 231
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 25/221 (11%)
Query: 83 KRFATAQPKAPAQARQMGALKVSISSPGFIYE--PYAPR-EAIPFWRRW--FTRDGWRRT 137
+R +P A Q K ++ PG + + P AP E P RW T G
Sbjct: 25 QRTGNERPPFDRNALQGAQDKNVVTMPGKVIDQAPLAPTAEPTPPSDRWKGLTEPGTVLA 84
Query: 138 KD-DIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 196
+ D I+E + S + + F + A Y+ I ANGD+ +LR ++ ++Y
Sbjct: 85 QGLDAIVE----------KDSTFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVY 134
Query: 197 SALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKF 256
+ IK+RE + +A L+G + D QLT+ F+++
Sbjct: 135 ESFDAAIKEREKNEQKTETRFVS------IDKAELVGAELRDRT---AQLTIRFVSQMIS 185
Query: 257 EAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
D G V G + DIW F + + W+L G
Sbjct: 186 ATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVG 226
>gi|298293768|ref|YP_003695707.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
gi|296930279|gb|ADH91088.1| import inner membrane translocase subunit Tim44 [Starkeya novella
DSM 506]
Length = 241
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 89/219 (40%), Gaps = 41/219 (18%)
Query: 93 PAQARQMGALKVSISSPGFIYEPYAPREAI------PFWRRWFTRDGWRRTKDDIILELK 146
PA+A A KV +S PG +P P A P RW + E+
Sbjct: 43 PAKAPAGPADKV-VSFPGAAEKPSVPEPAEATESDEPAPARWAG-----------VAEVG 90
Query: 147 SAYAIA----KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNE 202
SA A ++ G+ Q F T A Y+ I ANGD+ +L++ + +++
Sbjct: 91 SAVANGLDAIAAQERGFDAQHFLTGARAAYEMIVVAFANGDRAALKELLAREVFEGFSAA 150
Query: 203 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFE 257
I +RE KM T + +G+++ ++ + V Q+TL FL++
Sbjct: 151 IAEREQRGE-----------KMET---QFVGIEKVEIIEAGVKGRSAQMTLRFLSQLISV 196
Query: 258 AYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D G + GD + V D+W F + L W+L
Sbjct: 197 TRDKAGRVIDGDPEQVADVTDVWTFARELGTRDPNWKLV 235
>gi|335772603|gb|AEH58121.1| mitochondrial 39S ribosomal protein L45-like protein [Equus
caballus]
Length = 306
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 85/175 (48%), Gaps = 13/175 (7%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G R + + + S +I ++R+ + + + F +A +++ E + + N D
Sbjct: 100 LSKEGLARRAERLKKNVASQLSIRRIRECDANFKIKDFPEKAKNIFIEAHLCLNNSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L VTE + + ++K + WS V E +EP + ++ + L+ + ++ Q+
Sbjct: 160 LHTLVTENCFPDMVWDLKYKTVRWSFV--ESLEPPLVVQVRCSNLL-----NQGNMYGQI 212
Query: 247 TLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ +Q YD G + G D K+VL + VFEK L +P WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKHLVNPYGSWRMHGKI 265
>gi|256083996|ref|XP_002578220.1| mitochondrial 39S ribosomal protein L45 [Schistosoma mansoni]
gi|353232166|emb|CCD79521.1| putative mitochondrial 39S ribosomal protein L45 [Schistosoma
mansoni]
Length = 327
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT---------KDDIILELKS--AYAIA 152
++I G I++PY P + DG KD+++ + K+ ++
Sbjct: 82 INIGHTGTIFDPYIPPDG----------DGQSSLLSTKRLALLKDNLLNKGKNYKDLSLL 131
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMAN--GDKTSLRKAVTEKMYSALKNEIKQRESMW 210
K + ++ ++F EA ++Y E + L+ N +++ L + VTEK + ++K R W
Sbjct: 132 KSHEPSFNSKRFTIEAENIYVEAHDLLQNYRQNESRLFELVTEKALVDMTADLKLRTLQW 191
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDL---NKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
V IEP R++ + N+L V+ Q+T+ F +Q Y+ G +
Sbjct: 192 KFVG--NIEP--------PRVVQIRCNELLSKGNVYAQVTVRFYTQQILSIYNRFGRLLY 241
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
G+ V V + VFE+ + WRL G++
Sbjct: 242 GNPDTAVDVLEYVVFERHISDEYGTWRLHGKV 273
>gi|397468478|ref|XP_003805907.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
mitochondrial-like [Pan paniscus]
Length = 514
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 10/198 (5%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSG--YSK 161
+ ++ I++ Y P E +++G ++ + + + S + I K+++ G +
Sbjct: 284 IHLACTAGIFDAYVPPEGDAHMPS-LSKEGLKQRTEKMKKNVASQFLIQKIKEGGDNFET 342
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E++ + N L VTE + + +IK + WS V E +EP
Sbjct: 343 KDFPEKAKDIFTEVHLCLNNSXHDXLHTLVTEHCFPDMIXDIKYKTIRWSFV--ESLEPH 400
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
++ + L+ + ++ +T+ +Q D G + G + V + V
Sbjct: 401 HVVQVRCSSLM-----NQGNIYXLVTVGMHTQQTLAICDWFGRLMYGQEDVPKNVLEYVV 455
Query: 282 FEKSLFHPGAYWRLCGRI 299
FEK L +P WR+ G+I
Sbjct: 456 FEKHLTNPYGSWRMHGKI 473
>gi|391342091|ref|XP_003745357.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like
[Metaseiulus occidentalis]
Length = 305
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
++ +S F +EA DLY + + +A D+ L VTE Y + ++ + ++ W
Sbjct: 120 ETDFSIADFASEANDLYIKAHEALAEQDQDKLFSLVTEAAYPEMMANVEHK-----TLRW 174
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
+++ + R + R + ND F Q+T+ +Q YD G + G EVL
Sbjct: 175 QMLGSLEPARVVHIRTQSLLTND--NTFAQVTVRLHTQQTLAVYDRFGRLLHGS---EVL 229
Query: 276 VRDIW---VFEKSLFHPGAYWRLCGRI 299
V+D+ VFEK + + WRL +I
Sbjct: 230 VKDVLEYVVFEKHIANLYGQWRLHAKI 256
>gi|420237956|ref|ZP_14742399.1| hypothetical protein PMI07_00136 [Rhizobium sp. CF080]
gi|398089338|gb|EJL79859.1| hypothetical protein PMI07_00136 [Rhizobium sp. CF080]
Length = 236
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 34/205 (16%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAY--AIAKLRKS-- 157
++PY+PR+ + RR T D R D + + + A+ ++ KS
Sbjct: 41 FDPYSPRDVAKNPGGDDGKVVTLPRRDATEDEQRYADVDAVAKPDTPLNAALREVVKSDP 100
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+ ++F A Y+ I A+GD+ +L+ ++++++ I RES
Sbjct: 101 SFRPREFLNGARMAYEMIVMAFADGDRKTLKGLLSKEVFDGFDTAITDRES--------- 151
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
+ +++ +G+D+ D+ V Q+T+ +++ YD G + GD+
Sbjct: 152 -----RGEVVKSTFVGIDKADITHAAVKDAEEQITVRIVSQLISATYDKAGALIDGDQET 206
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + + WRL
Sbjct: 207 VAEVTDIWTFARDIRSRDPNWRLVA 231
>gi|421595667|ref|ZP_16039658.1| hypothetical protein BCCGELA001_01383 [Bradyrhizobium sp.
CCGE-LA001]
gi|404272224|gb|EJZ35913.1| hypothetical protein BCCGELA001_01383 [Bradyrhizobium sp.
CCGE-LA001]
Length = 231
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + + F + A Y+ I ANGD+ +LR ++ ++Y + IK+RE
Sbjct: 93 KDSSFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTE 152
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +A L+G + D N QLT+ F+++ D G V G
Sbjct: 153 TRFVS------IDKAELVGAELRDRN---AQLTVRFVSQMISATRDKAGNIVDGSADTVA 203
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + + W+L G
Sbjct: 204 DITDIWTFARDISSRDPNWKLVG 226
>gi|386399426|ref|ZP_10084204.1| hypothetical protein Bra1253DRAFT_05004 [Bradyrhizobium sp.
WSM1253]
gi|385740052|gb|EIG60248.1| hypothetical protein Bra1253DRAFT_05004 [Bradyrhizobium sp.
WSM1253]
Length = 231
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 25/221 (11%)
Query: 83 KRFATAQPKAPAQARQMGALKVSISSPGFIYE--PYAPR-EAIPFWRRW--FTRDGWRRT 137
+R +P A Q K ++ PG + + P AP E P RW T G
Sbjct: 25 QRTGNERPPFDRNALQGAQDKNVVTMPGKVIDQAPLAPTAEPAPPSDRWKGLTEPGTVLA 84
Query: 138 KD-DIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 196
+ D I+E + S + + F + A Y+ I ANGD+ +LR ++ ++Y
Sbjct: 85 QGLDSIVE----------KDSTFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVY 134
Query: 197 SALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKF 256
+ IK+RE + +A L+G + D QLT+ F+++
Sbjct: 135 ESFDAAIKEREKNEQKTETRFVS------IDKAELVGAELRDRT---AQLTIRFVSQMIS 185
Query: 257 EAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
D G V G + DIW F + + W+L G
Sbjct: 186 ATRDKAGNIVDGSADTVADITDIWTFARDITSRDPNWKLVG 226
>gi|355704372|gb|AES02205.1| mitochondrial ribosomal protein L45 [Mustela putorius furo]
Length = 322
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
++G + + + ++ S ++ K+R+ + + F +A D++ E + + N D
Sbjct: 123 LAKEGLAQRSERLKKKVASQLSVRKIRQYDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDR 182
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK--VFV 244
L VTE + + +I + +V W +E + + ++ R N LN+ ++
Sbjct: 183 LHTLVTENCFPDMVWDI-----TYKTVRWSFVESLEPPQVVQVRC----SNLLNQGNIYG 233
Query: 245 QLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
Q+T+ +Q YD G + G + V + VFEK L +P WR+ G+I
Sbjct: 234 QITVRLHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLVNPYGSWRMHGKI 288
>gi|383768469|ref|YP_005447532.1| hypothetical protein S23_01940 [Bradyrhizobium sp. S23321]
gi|381356590|dbj|BAL73420.1| hypothetical protein S23_01940 [Bradyrhizobium sp. S23321]
Length = 235
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 106 ISSPGFIYE--PYAPR-EAIPFWRRW--FTRDGWRRTKD-DIILELKSAYAIAKLRKSGY 159
++ PG + + P AP E P RW T G + D I+E + S +
Sbjct: 52 VTMPGKVIDQAPLAPTAEPAPPSDRWKGLTEPGTTLAQGLDAIVE----------KDSTF 101
Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219
+ F + A Y+ I ANGD+ +LR ++ ++Y + IK+RE +
Sbjct: 102 DPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTETRFVS 161
Query: 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
+A L+G + D QLT+ F+++ D G V G + DI
Sbjct: 162 ------IDKAELVGAELRDRT---AQLTIRFVSQMISATRDKAGNIVDGSADTVADITDI 212
Query: 280 WVFEKSLFHPGAYWRLCG 297
W F + + W+L G
Sbjct: 213 WTFARDITSRDPNWKLVG 230
>gi|90421823|ref|YP_530193.1| import inner membrane translocase subunit Tim44 [Rhodopseudomonas
palustris BisB18]
gi|90103837|gb|ABD85874.1| import inner membrane translocase, subunit Tim44 [Rhodopseudomonas
palustris BisB18]
Length = 233
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + Q F T A Y+ I ANGD+ +L+ ++ ++Y + + I++RE
Sbjct: 95 QDSSFDPQHFLTGARGAYEMIVLAFANGDRRALKDLLSPEVYDSFEAVIREREKQEQKTE 154
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +A L+ + D QLT+ F+++ D G V G+ K
Sbjct: 155 TRFVS------IDKAELVSAEARDRA---AQLTVRFVSQMITVTRDKTGAIVDGNPDKVA 205
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ D+W F + + W+L G
Sbjct: 206 DITDVWTFARDVGSRDPNWKLVG 228
>gi|414169339|ref|ZP_11425176.1| hypothetical protein HMPREF9696_03031 [Afipia clevelandensis ATCC
49720]
gi|410886098|gb|EKS33911.1| hypothetical protein HMPREF9696_03031 [Afipia clevelandensis ATCC
49720]
Length = 243
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S + Q F + A Y+ I ANGD+ +L+ ++ ++Y + IK+RE V
Sbjct: 107 SSFDAQHFVSGAKSAYEMIVLAFANGDRRALKDLLSSEVYEGFEAAIKEREQRGEKVE-- 164
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKT 271
R +D+ ++ V Q+T+ F+++ D G V G+
Sbjct: 165 ------------TRFASIDKAEIVNAEVRDRAAQITIRFVSQMISVTRDKAGAVVDGNAE 212
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
K V D+W F + + W+L G
Sbjct: 213 KLTDVTDVWTFARDITSRDPNWKLVG 238
>gi|338972494|ref|ZP_08627867.1| transporter [Bradyrhizobiaceae bacterium SG-6C]
gi|338234279|gb|EGP09396.1| transporter [Bradyrhizobiaceae bacterium SG-6C]
Length = 233
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S + Q F + A Y+ I ANGD+ +L+ ++ ++Y + IK+RE V
Sbjct: 97 SSFDAQHFVSGAKSAYEMIVLAFANGDRRALKDLLSSEVYEGFEAAIKEREQRGEKVE-- 154
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKT 271
R +D+ ++ V Q+T+ F+++ D G V G+
Sbjct: 155 ------------TRFASIDKAEIVNAEVRDRAAQITIRFVSQMISVTRDKAGAVVDGNAE 202
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
K V D+W F + + W+L G
Sbjct: 203 KLTDVTDVWTFARDITSRDPNWKLVG 228
>gi|384214330|ref|YP_005605493.1| hypothetical protein BJ6T_06100 [Bradyrhizobium japonicum USDA 6]
gi|354953226|dbj|BAL05905.1| hypothetical protein BJ6T_06100 [Bradyrhizobium japonicum USDA 6]
Length = 235
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + + F + A Y+ I ANGD+ +LR ++ ++Y + IK+RE
Sbjct: 97 KDSTFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVYDSFDAAIKEREKNEQKTE 156
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +A L+G + D QLT+ F+++ D G V G
Sbjct: 157 TRFVS------IDKAELVGAELRDRT---AQLTIRFVSQMISATRDKSGNIVDGSADTVA 207
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + + W+L G
Sbjct: 208 DITDIWTFARDITSRDPNWKLVG 230
>gi|301762886|ref|XP_002916855.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 324
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 131 RDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLR 188
++G + + + ++ S +I K+R+ + + F +A D++ E + + N D L
Sbjct: 125 KEGLAQRSERLKKKVASQLSIRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLH 184
Query: 189 KAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTL 248
VTE + + +I + +V W IE + + ++ R + ++ Q+T+
Sbjct: 185 TLVTENCFPDMVWDI-----TYKTVRWSFIESLEPPQVVQVRCSSMLSQ--GNIYGQVTV 237
Query: 249 EFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+Q YD G + G D K+VL + VFEK L +P WR+ G+I
Sbjct: 238 RMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKHLVNPYGSWRMHGKI 288
>gi|225712958|gb|ACO12325.1| Probable 39S ribosomal protein L45, mitochondrial precursor
[Lepeophtheirus salmonis]
Length = 340
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
I S G + + Y P E +++G + + KS A K+R + + ++
Sbjct: 100 IGSTGALIDTYVPTEG-DGKASILSKEGAKEGLTKGTGKGKSFLAARKIRSYEDDFDQKT 158
Query: 164 FYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI---E 219
F +A ++Y K +L+ NG+ L K VTEK Y + + ++++ ++ WE I E
Sbjct: 159 FLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRRK-----TLRWEFIKSLE 213
Query: 220 P--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
P I+ +RT D F Q+T+ F +Q YD G + G EV+ +
Sbjct: 214 PPTIVHIRTQ-------DLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGS---EVVAK 263
Query: 278 DIW---VFEKSLFHPGAYWRLCGRI 299
D+ VFE+ L WRL +I
Sbjct: 264 DVLEYVVFERHLASIYGSWRLHSKI 288
>gi|170739669|ref|YP_001768324.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
gi|168193943|gb|ACA15890.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. 4-46]
Length = 238
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
++ G+ + F A Y+ I A GD+ +L+ ++ ++ + I+ RE SV
Sbjct: 100 QEPGFDPRAFTDGAKIAYETIVMAFAKGDRRTLKSLLSREVAEGFERAIQARERAGQSVE 159
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ RA ++GVD L Q+T+ +L+K +++G V G V
Sbjct: 160 TTFVS------IDRAEIVGVD---LRNRVAQITVRYLSKLITATRNAQGAVVDGSPDTVV 210
Query: 275 LVRDIWVFEKSLFHPGAYWRLC 296
V D+W F ++L W+L
Sbjct: 211 DVTDVWTFARTLGSRDPNWQLV 232
>gi|410980995|ref|XP_003996859.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Felis catus]
Length = 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G + + + ++ S ++ K+R+ + + F +A D++ E + + N D
Sbjct: 100 LSKEGLAQRSERLKKKVTSQLSVRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L VTE + + +IK + +V W +E + + ++ R + + ++ Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVRWSFVESLEPPQVVQVRCSSLMNH--GNIYGQV 212
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ + Q YD G + G + V + VFEK L +P WR+ G++
Sbjct: 213 TVRMQSLQTLAIYDRFGRLMYGQEGVPRDVLEYVVFEKHLVNPYGSWRMHGKV 265
>gi|27375753|ref|NP_767282.1| hypothetical protein blr0642 [Bradyrhizobium japonicum USDA 110]
gi|27348891|dbj|BAC45907.1| blr0642 [Bradyrhizobium japonicum USDA 110]
Length = 235
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + + F + A Y+ I ANGD+ +LR ++ ++Y + IK+RE
Sbjct: 97 KDSTFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVYESFDAAIKEREKNEQKTE 156
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +A L+G + D QLT+ F+++ D G V G
Sbjct: 157 TRFVS------IDKAELVGAELRDRT---AQLTIRFVSQMISATRDKAGNIVDGSADTVA 207
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + + W+L G
Sbjct: 208 DITDIWTFARDITSRDPNWKLVG 230
>gi|426237849|ref|XP_004012870.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Ovis aries]
Length = 306
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 114/270 (42%), Gaps = 33/270 (12%)
Query: 49 SCLCKDHGALPWTRGST-MTLRSSLAPKSLLYLNEKRFATA--QPKAPAQ------ARQM 99
SCL + G W+R MT S++ P +KRF QPK + AR+
Sbjct: 10 SCLSRAVGR--WSRQPILMTQSSAVVP----VRTKKRFTPPPYQPKYKTEKQFIDYARKA 63
Query: 100 GAL--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAI 151
G + + ++ I++ Y P E +++G + + + S +I
Sbjct: 64 GLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQRTERFKKNVASQLSI 122
Query: 152 AKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
++++S + + F +A D++ E + + N D L VTE + + +IK
Sbjct: 123 RRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIK----- 177
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+ +V W +E + + ++ R + + + Q+T+ +Q YD G + G
Sbjct: 178 YKTVRWSFVESLEPPQVVQVRCSSLMTQ--SNAYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ V + VFEK L +P WR+ G+I
Sbjct: 236 EDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265
>gi|281344359|gb|EFB19943.1| hypothetical protein PANDA_004986 [Ailuropoda melanoleuca]
Length = 276
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 131 RDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLR 188
++G + + + ++ S +I K+R+ + + F +A D++ E + + N D L
Sbjct: 81 KEGLAQRSERLKKKVASQLSIRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHNRLH 140
Query: 189 KAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTL 248
VTE + + +I + +V W IE + + ++ R + ++ Q+T+
Sbjct: 141 TLVTENCFPDMVWDI-----TYKTVRWSFIESLEPPQVVQVRCSSMLSQ--GNIYGQVTV 193
Query: 249 EFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+Q YD G + G D K+VL + VFEK L +P WR+ G+I
Sbjct: 194 RMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKHLVNPYGSWRMHGKI 244
>gi|456351790|dbj|BAM86235.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 249
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F T A Y+ I ANGD+ +LR ++ ++Y + ++ IK RE +
Sbjct: 116 FDPRHFLTGARSAYEMIVLAFANGDRRALRDLLSSEVYDSFESVIKDREKHEQKTETRFV 175
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
A L+ D D QLT+ F+++ D G V G+ K + D
Sbjct: 176 S------IDTAELVSADVRDRA---AQLTVRFVSQMISVTRDKAGNIVDGNPDKVADITD 226
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW F + W+L G
Sbjct: 227 IWTFARDTGSRDPNWKLVG 245
>gi|46201691|ref|ZP_00054533.2| COG4395: Uncharacterized protein conserved in bacteria
[Magnetospirillum magnetotacticum MS-1]
Length = 219
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 11/164 (6%)
Query: 135 RRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT 192
RR+ + E +A +R + G+ F A ++ I A+GDK +L+ +
Sbjct: 58 RRSASEPPAETPLGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLA 117
Query: 193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLA 252
+Y I R ++ EL+ +R+ G+D F LT++F++
Sbjct: 118 PDVYRHFSEAIDARRQHGETLQTELV----GIRSAELVEAGMDGR-----FAALTIKFVS 168
Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+Q D+KG V G+ + + V D+W F + P W L
Sbjct: 169 EQVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSPDPNWALT 212
>gi|92115749|ref|YP_575478.1| import inner membrane translocase subunit Tim44 [Nitrobacter
hamburgensis X14]
gi|91798643|gb|ABE61018.1| import inner membrane translocase, subunit Tim44 [Nitrobacter
hamburgensis X14]
Length = 234
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
S + + F + A Y+ I ANGD+ +L+ ++ +Y + IK RE +
Sbjct: 96 HDSSFDPKHFISGARSAYEMIVLAFANGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTE 155
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ + LIG + D + QLT+ F+++ D G V G+ K
Sbjct: 156 TRFVS------IDKVELIGAELRDSAE---QLTVRFISQMISMTRDKTGAIVDGNPEKIS 206
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ D+W F + + W+L G
Sbjct: 207 DITDVWTFARDIPSRDPNWKLVG 229
>gi|154251701|ref|YP_001412525.1| import inner membrane translocase subunit Tim44 [Parvibaculum
lavamentivorans DS-1]
gi|154155651|gb|ABS62868.1| import inner membrane translocase subunit Tim44 [Parvibaculum
lavamentivorans DS-1]
Length = 247
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 150 AIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
AIA ++ + + F + A Y+ I T A GD+ +L+ +++ +Y++ + I RE
Sbjct: 105 AIADADRT-FDTESFLSGARMAYEMIVTAFAAGDRATLKPLLSDDVYASFEGAISAREKA 163
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDR-----NDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
++ I G+D+ L+ +LT+ F ++ +S GV
Sbjct: 164 GLQIDQSFI--------------GIDKAAITGGSLDGTRARLTVSFRSELTSSTKNSDGV 209
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V GD + D+W FE+ L + W+L
Sbjct: 210 VVEGDPVTVREITDVWTFERDLRNRDPNWKLV 241
>gi|83320119|ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial [Bos taurus]
gi|88932615|sp|Q3T142.1|RM45_BOVIN RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|74267993|gb|AAI02137.1| Mitochondrial ribosomal protein L45 [Bos taurus]
Length = 306
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G + + + + S +I ++++S + + F +A D++ E + + N D
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L VTE + + +IK + +V+W +E + + ++ R + + + Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVSWSFVESLEPPQVVQVRCSSLVTK--SNTYGQV 212
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ +Q YD G + G + V + VFEK L +P WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265
>gi|296535049|ref|ZP_06897314.1| Tim44 domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296264626|gb|EFH10986.1| Tim44 domain protein [Roseomonas cervicalis ATCC 49957]
Length = 165
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 150 AIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
A+ ++R++ G+ F A ++ I T A GD+ +LR ++E Y+ + I RE
Sbjct: 22 ALQRIRQADAGFDPYAFLGGAEGAFRMIVTAFAAGDRATLRDLLSEDTYAGFEQAITARE 81
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
S E I + +M +D DL +TL ++ Q +G V+
Sbjct: 82 SAGERQRTE-IHGVHEM--------AIDAADLRGSVADITLRIVSDQVNLTTGPQGEAVS 132
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
G + L D+W F++ L W+L G
Sbjct: 133 GTEAVTELT-DVWTFQRDLRSGDPTWKLVG 161
>gi|414176731|ref|ZP_11430960.1| hypothetical protein HMPREF9695_04606 [Afipia broomeae ATCC 49717]
gi|410886884|gb|EKS34696.1| hypothetical protein HMPREF9695_04606 [Afipia broomeae ATCC 49717]
Length = 232
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ Q F + A Y+ I ANGD+ +L+ ++ ++Y + IK+RE V
Sbjct: 98 FDAQHFISGAKSAYEMIVLAFANGDRRTLKDLLSSEVYEGFEAAIKEREQRGEKVETRF- 156
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
+A ++ + D + Q+T+ F+++ D G V G+ K V D
Sbjct: 157 -----ASIDKAEIVNAETRDRS---AQITVRFVSQMISVTRDKAGTVVDGNAEKLTDVTD 208
Query: 279 IWVFEKSLFHPGAYWRLCG 297
+W F + + W+L G
Sbjct: 209 VWTFARDIASRDPNWKLVG 227
>gi|290562045|gb|ADD38419.1| Probable 39S ribosomal protein L45, mitochondrial [Lepeophtheirus
salmonis]
Length = 340
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
I S G + + Y P E +++G + + KS A K+R + + ++
Sbjct: 100 IGSTGALIDTYVPTEG-DGKASILSKEGAKEGLTKGTGKGKSFLAARKIRSYEDDFDQKT 158
Query: 164 FYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI---E 219
F +A ++Y K +L+ NG+ L K VTEK Y + + ++++ ++ WE I E
Sbjct: 159 FLLQAQEIYIKAHKSLVENGEDECLLKYVTEKAYPEMVHNVRRK-----TLRWEFIKSLE 213
Query: 220 P--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
P I+ +RT D F Q+T+ F +Q YD G + G EV+ +
Sbjct: 214 PPTIVHIRTQ-------DLLQKQNKFAQVTVRFHTQQTLAVYDRFGRLIHGS---EVVAK 263
Query: 278 DIW---VFEKSLFHPGAYWRLCGRI 299
D+ VFE+ L WRL +I
Sbjct: 264 DVLEYVVFERHLASIYESWRLHSKI 288
>gi|41053493|ref|NP_956601.1| 39S ribosomal protein L45, mitochondrial [Danio rerio]
gi|29476850|gb|AAH50166.1| Mitochondrial ribosomal protein L45 [Danio rerio]
Length = 251
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 119 REAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEIN 176
+ +P W W + WR + AI K++ S ++ ++F ++ + +
Sbjct: 38 KPELPVW--WSDKSTWRDPSTS-----HAQLAIRKIKDYDSTFTSKEFPGIGQQIFIDAH 90
Query: 177 TLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDR 236
+ +K L VTE+ Y + R + + ++ W IE + R ++AR D
Sbjct: 91 AALTEFNKEKLHSLVTERCYPEMV-----RGNRYKTLRWRFIESLEPPRLVQARC--PDM 143
Query: 237 NDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
++ Q+T+ ++Q YD G + GD+ + V + V E+ L +P WRL
Sbjct: 144 ISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEYLVMERHLVNPYGRWRLH 203
Query: 297 GRI 299
G+I
Sbjct: 204 GKI 206
>gi|351711273|gb|EHB14192.1| 39S ribosomal protein L45, mitochondrial [Heterocephalus glaber]
Length = 306
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 93/200 (46%), Gaps = 14/200 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++S I++ Y P E +++G ++ + + + S +I K+R+ + +
Sbjct: 76 IHLASTASIFDAYIPPEGDARMSA-LSKEGLKQKTERLKKNVTSQLSIRKIREYDANFKI 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + +++ + +V W +E +
Sbjct: 135 RDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLR-----YKTVRWHFVESL 189
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
+ + R + + + ++ Q+T+ +Q YD G + G D K+VL +
Sbjct: 190 EPAQVTQVRCSSL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDMPKDVL--EY 245
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFE+ L +P WR+ +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265
>gi|365892151|ref|ZP_09430482.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365331816|emb|CCE03013.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 233
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F T A Y+ I ANGD+ +LR ++ ++Y + IK RE +
Sbjct: 100 FDPRHFLTGARSAYEMIVLAFANGDRRALRDLLSSEVYDSFDAVIKDREKNEHKTETRFV 159
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
A L+G + D QLT+ F+++ D G V G+ K + D
Sbjct: 160 S------IDTAELVGAEARDRT---AQLTVRFVSQMISVTRDKMGNIVDGNPDKVADITD 210
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW F + W+L G
Sbjct: 211 IWTFARDTGSRDPNWKLVG 229
>gi|83313642|ref|YP_423906.1| hypothetical protein amb4543 [Magnetospirillum magneticum AMB-1]
gi|82948483|dbj|BAE53347.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
Length = 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 11/164 (6%)
Query: 135 RRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT 192
RR+ + E +A +R + G+ F A ++ I A+GDK +L+ +
Sbjct: 120 RRSASEPPAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLA 179
Query: 193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLA 252
+Y + I R ++ EL+ +RT G+D F LT+ F++
Sbjct: 180 PDVYRHFSDAIDARRQHGETLQTELV----GIRTAELVEAGMDGR-----FAALTIRFVS 230
Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+Q D+KG V G+ + + V D+W F + W L
Sbjct: 231 EQVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSADPNWALA 274
>gi|88607695|ref|YP_504724.1| Tim44-like domain-containing protein [Anaplasma phagocytophilum HZ]
gi|88598758|gb|ABD44228.1| Tim44-like domain protein [Anaplasma phagocytophilum HZ]
Length = 241
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 137 TKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 196
T+++ E+ + + R +S + F + ++ I + GD L +++ +Y
Sbjct: 88 TEEEHFEEVSPGIEVMRARSMDFSLRNFMAGSAAAFEVIMKALNRGDTELLSSLLSDDIY 147
Query: 197 SALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKF 256
+ + EI +R S ++ +++ I+ + A++IG D+ +T++FL +Q
Sbjct: 148 KSFEKEIMRRNSE-GHIHEDVVVSIVSQKITAAKVIG----DV----AAITVKFLTEQIN 198
Query: 257 EAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRL 295
++ G +AG +K +V D W FEK+ P W L
Sbjct: 199 VVRNAAGDVIAGSTSKINVVEDFWTFEKNANSPSRKWYL 237
>gi|148259158|ref|YP_001233285.1| import inner membrane translocase subunit Tim44 [Acidiphilium
cryptum JF-5]
gi|326402311|ref|YP_004282392.1| putative transporter [Acidiphilium multivorum AIU301]
gi|146400839|gb|ABQ29366.1| import inner membrane translocase, subunit Tim44 [Acidiphilium
cryptum JF-5]
gi|325049172|dbj|BAJ79510.1| putative transporter [Acidiphilium multivorum AIU301]
Length = 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+ +F A ++ I A GD +LR +T +++ + + QR + + E+
Sbjct: 88 GFDPARFLDGAEASFRRIVLAFAAGDLAALRPLLTPGVFATFEQAVAQRAEAGETQHTEI 147
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
+ I++ A L+G + + + F++ Q+ D +G +AG + +V
Sbjct: 148 VR-IVEATIDEAELLGGE--------AVIVVRFVSDQQNYTRDRQGQVIAGTEAMTEIV- 197
Query: 278 DIWVFEKSLFHPGAYWRLC 296
D+W FEKSL WRL
Sbjct: 198 DLWSFEKSLGAADPTWRLA 216
>gi|449491410|ref|XP_002186709.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Taeniopygia guttata]
Length = 205
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 151 IAKLRKSGYSK------QKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
+ KLR++ S+ Q+F+ E + L + + + + +K L VTE+ Y +
Sbjct: 25 MQKLRQTAASQLAYVPLQEFFGEPLSLCWGDRGCFLCSFNKQKLHSLVTERCYPDMV--- 81
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGV-DRNDLNKVFVQLTLEFLAKQKFEAYDSK 262
R + + ++ W +E + R + R G+ +R +L + Q+T+ ++Q YD
Sbjct: 82 --RGNRYKTIRWRFVESLEPPRVVHVRCEGILNRGNL---YGQVTVRMHSRQILAIYDRF 136
Query: 263 GVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
G + G + V + VFE+ L +P WR+ G+I
Sbjct: 137 GRLMYGGEEIPKDVLEYVVFERYLVNPYGTWRMHGKI 173
>gi|296476478|tpg|DAA18593.1| TPA: 39S ribosomal protein L45, mitochondrial precursor [Bos
taurus]
gi|440904214|gb|ELR54753.1| 39S ribosomal protein L45, mitochondrial [Bos grunniens mutus]
Length = 306
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 9/173 (5%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G + + + + S +I ++++S + + F +A D++ E + + N D
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L VTE + + +IK + +V W +E + + ++ R + + + Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVRWSFVESLEPPQVVQVRCSSLVTK--SNAYGQV 212
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ +Q YD G + G + V + VFEK L +P WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265
>gi|398821401|ref|ZP_10579865.1| hypothetical protein PMI42_02351 [Bradyrhizobium sp. YR681]
gi|398227929|gb|EJN14087.1| hypothetical protein PMI42_02351 [Bradyrhizobium sp. YR681]
Length = 235
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + + F + A Y+ I ANGD+ +LR ++ ++Y + IK+RE
Sbjct: 97 KDSTFDPRHFISGARGAYEMIVLAFANGDRRALRDLLSSEVYDSFDAAIKEREKNEQKTE 156
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ +A L+G + D QLT+ F+++ D G V G
Sbjct: 157 TRFVS------IDKAELVGAELRDRT---AQLTIRFVSQMISATRDKAGNIVDGSADTVA 207
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + W+L G
Sbjct: 208 DITDIWTFARDTTSRDPNWKLVG 230
>gi|195572942|ref|XP_002104454.1| GD20969 [Drosophila simulans]
gi|194200381|gb|EDX13957.1| GD20969 [Drosophila simulans]
Length = 335
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 13/127 (10%)
Query: 176 NTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVD 235
+T MA DK +R+ V+E+ Y + + +K + ++ W+ ++ + R + AR+ V
Sbjct: 154 HTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEPPRVVHARVTEVI 208
Query: 236 RNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW---VFEKSLFHPGAY 292
+ F Q+T+ F ++Q YD G + G E++ +D+ VFEK + +
Sbjct: 209 TKENQ--FAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYVVFEKHISNEYGK 263
Query: 293 WRLCGRI 299
WRL +I
Sbjct: 264 WRLHDKI 270
>gi|148251774|ref|YP_001236359.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
gi|146403947|gb|ABQ32453.1| hypothetical protein BBta_0156 [Bradyrhizobium sp. BTAi1]
Length = 233
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F T A Y+ I ANGD+ +LR ++ ++Y + IK RE +
Sbjct: 100 FDPRHFLTGARSAYEMIVLAFANGDRRALRDLLSSEVYDSFDAVIKDREKHEQKTETRFV 159
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
A L+ D D QLT+ F+++ D G V G+ K + D
Sbjct: 160 S------IDTAELVSADLRDRT---AQLTVRFVSQMISVTRDKMGNIVDGNPDKVADITD 210
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW F + W+L G
Sbjct: 211 IWTFARDTGSRDPNWKLVG 229
>gi|75674306|ref|YP_316727.1| hypothetical protein Nwi_0107 [Nitrobacter winogradskyi Nb-255]
gi|74419176|gb|ABA03375.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
Length = 234
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + F + A Y+ I ANGD+ +L+ ++ +Y + IK RE +
Sbjct: 96 QDSSFDPAHFLSGARSAYEMIVLAFANGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTE 155
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ + LIG + D + QLT+ F+++ D G V G+ K
Sbjct: 156 TRFVS------IDKVELIGAEVRDGAE---QLTVRFISQMISVTRDKTGAIVDGNPEKIS 206
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ D+W F + + W+L G
Sbjct: 207 DITDVWTFARDISSRDPNWKLVG 229
>gi|209735096|gb|ACI68417.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
gi|303659089|gb|ADM15945.1| 39S ribosomal protein L45, mitochondrial precursor [Salmo salar]
Length = 317
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 101/228 (44%), Gaps = 20/228 (8%)
Query: 83 KRFATAQPKAPAQARQMGAL--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGW 134
K+ A A A+AR G + ++I+ +++PY E +++
Sbjct: 54 KKKAAASADQEAKARAAGVVLRQEYMERAINIACTAGVFDPYITPEGDARLSS-LSKESL 112
Query: 135 RRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT 192
+R + I + S AI K+++ S ++ + F +A +++ + + + +K L VT
Sbjct: 113 KRRTEQIKQDAASQLAIRKIKEHESEFTTKAFPVKAQEIFVDAHNALTQFNKEKLHSLVT 172
Query: 193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIG-VDRNDLNKVFVQLTLEFL 251
E+ Y + R + + ++ W +E + + + AR V + D+ + Q+T+
Sbjct: 173 ERCYPEM-----VRRNRYKTLRWHFVESLEPPKVVHARCPDMVSKGDM---YGQVTVRMH 224
Query: 252 AKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
++Q Y G + G + + V + V E+ L + WRL G+I
Sbjct: 225 SRQTLAVYGRFGRLMMGSEEEPRDVLEYLVLERHLVNHYGMWRLHGKI 272
>gi|430005757|emb|CCF21560.1| Import inner membrane translocase subunit Tim44 [Rhizobium sp.]
Length = 231
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I A+GD+ SL+ +++++Y I RES
Sbjct: 97 FQPREFLNGARMAYEMIVMAFADGDRKSLKNLLSKEVYEGFDAAISDRES---------- 146
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ +++ +G+D+ D+ + V Q+T+ +++ YD G + GD+
Sbjct: 147 ----RGEVVKSTFVGIDKADITQASVRGNEEQVTVRIVSQLISATYDKSGAVIDGDQEAV 202
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + + W+L
Sbjct: 203 AEVIDIWTFARDVRSRDPNWKLV 225
>gi|346473509|gb|AEO36599.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)
Query: 106 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 163
I+ G ++EPY P E T+ G + + + KS + K+R + + +
Sbjct: 100 IACSGGVFEPYLPPEG-DGKVSLLTKAGAIQRMRRLEMRGKSYMNLRKIRAFEDEFDLVE 158
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F A ++Y E + +A+ D+ L VTE Y + I+++ ++ W+ + +
Sbjct: 159 FADTAQEIYVEAHKALADRDEDRLHDLVTEHCYPIMMENIERK-----TLRWQFVRSLEP 213
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 280
R + R VD F Q+T+ F +Q YD G + G E +++D+
Sbjct: 214 PRAVHVRC--VDMLSKENQFGQITMRFHNQQTLAVYDRFGRLMHGS---EAVIKDVLEYV 268
Query: 281 VFEKSLFHPGAYWRLCGRI 299
VFEK + WR+ +I
Sbjct: 269 VFEKHISDLYGTWRIHSKI 287
>gi|417858382|ref|ZP_12503439.1| hypothetical protein Agau_C101012 [Agrobacterium tumefaciens F2]
gi|338824386|gb|EGP58353.1| hypothetical protein Agau_C101012 [Agrobacterium tumefaciens F2]
Length = 232
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 36/206 (17%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----- 156
++PY+PR+ + +R D R + D + + SA A LR
Sbjct: 37 FDPYSPRDVAKGPVTDDNKVVTLPKRGEAEDENRFAEADALAPVDSALN-ASLRDVMTKD 95
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ ++F A Y+ I A+GD+ +L+ ++++++ I +RES
Sbjct: 96 PTFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFDAAISERES-------- 147
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKT 271
+ +++ +G+++ D+ + V Q+TL +++ YD G V GD
Sbjct: 148 ------RGEVVKSTFVGIEKADITQAAVRDSEVQITLRLVSQLISATYDKDGKLVDGDPD 201
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + + W+L
Sbjct: 202 AVAEVDDIWTFSRDIRSRDPNWKLIA 227
>gi|154245991|ref|YP_001416949.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
gi|154160076|gb|ABS67292.1| import inner membrane translocase subunit Tim44 [Xanthobacter
autotrophicus Py2]
Length = 250
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
IA++ + + + F T A Y+ I T A GD+ +L+ + + +Y + I RES
Sbjct: 109 IARI-EPDFDARHFLTGARAAYEMIVTAFAAGDRRALKDLLAKDVYDGFVSAIADRES-- 165
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVT 265
+ T+ +R + V++ +L V V QLT+ F++K G
Sbjct: 166 ------------RRETMESRFVAVEQAELQDVTVRDRSAQLTVRFVSKLISVTRGPDGAV 213
Query: 266 VAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
V G V D+W F + L W+L
Sbjct: 214 VDGSPDTVADVTDVWTFARDLGTRDPNWKLVA 245
>gi|299133204|ref|ZP_07026399.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
gi|298593341|gb|EFI53541.1| import inner membrane translocase subunit Tim44 [Afipia sp. 1NLS2]
Length = 234
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 114 EPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYK 173
+P +PRE W+ D EL S ++ Q F + A Y+
Sbjct: 68 DPVSPRER---WKGIAAPDS----------ELASGLDQVAAADPSFNAQHFISGAKSAYE 114
Query: 174 EINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIG 233
I ANGD+ +L+ ++ +Y + IK RE V + I K + A G
Sbjct: 115 MIVLAFANGDRRTLKDLLSSDVYDGFEAVIKGREQQGEKVETKFAS-IDKAELVSA---G 170
Query: 234 VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYW 293
V R+ L LT+ F+++ D G + G+ K V D+W F + + W
Sbjct: 171 V-RDKL----AHLTVRFVSQMITATRDKDGAVIDGNPEKLTDVTDVWTFSRDVSSRDPNW 225
Query: 294 RLCG 297
+L G
Sbjct: 226 KLVG 229
>gi|341891962|gb|EGT47897.1| hypothetical protein CAEBREN_06362 [Caenorhabditis brenneri]
Length = 354
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+K G+ K + F +A D+Y + + + DK + K +TE ++ + +++
Sbjct: 162 KKQGFEKFDVKTFCGKAEDIYVRAHKSLESRDKREMHKYITEYAFAKMWPDVEN-----G 216
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
SV +EL+E + R + R N + Q+T+ KQK YD G + G +
Sbjct: 217 SVRFELLEVVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTKQKLAVYDRFGGLILGSED 275
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+E V + VFE + WRL G+I
Sbjct: 276 EEKDVVEYVVFENHIAVVDGEWRLHGKI 303
>gi|308460507|ref|XP_003092557.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
gi|308253077|gb|EFO97029.1| hypothetical protein CRE_26805 [Caenorhabditis remanei]
Length = 361
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+K G+ K + F +A D+Y + + DK + + +TE ++ + +++
Sbjct: 166 KKQGFEKFDVKTFCAKAEDIYVRAHKALEARDKKEMYRCITEYAFAKMWPDVEN-----G 220
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
SV +EL+E + R + R N + Q+T+ KQK YD G + G +
Sbjct: 221 SVRFELVEVVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTKQKLAVYDRFGGLILGSEN 279
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+E V + VFE + WRL G+I
Sbjct: 280 EEKDVVEYVVFENHIAVVDGEWRLHGKI 307
>gi|115534069|ref|NP_497347.3| Protein MRPL-45 [Caenorhabditis elegans]
gi|97537043|sp|Q95Y71.3|RM45_CAEEL RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Flags: Precursor
gi|373220636|emb|CCD73925.1| Protein MRPL-45 [Caenorhabditis elegans]
Length = 357
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+K G+ K + F +A D+Y + + + DKT++ K +TE ++ + +++
Sbjct: 164 KKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVEN-----G 218
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
SV +ELI + R + R N + Q+T+ +QK YD G + G +
Sbjct: 219 SVRFELISVLEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLAVYDRFGGLLLGSED 277
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+E V + VFE + WRL G+I
Sbjct: 278 EEKDVVEYVVFENHIAVVDGEWRLHGKI 305
>gi|126308283|ref|XP_001372116.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like
[Monodelphis domestica]
Length = 310
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 81/175 (46%), Gaps = 13/175 (7%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
++ G ++ + + + S AI K+R+ + + + F +A ++ E + + D
Sbjct: 100 LSKAGLQQKTEKLKQGVASQLAIRKVREYDADFRTKTFPEKAQQIFVEAHQCLNTSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L VTE+ + + +I+ + +V+W +E + R + R + ++ Q+
Sbjct: 160 LHALVTERCFPEMVWDIQLK-----TVHWNFVESLEPPRVVHVRCPNMVSE--GNIYGQV 212
Query: 247 TLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ +Q YD G + G D K+VL + VFE+ L +P WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLTNPYGAWRMHGKI 265
>gi|194374347|dbj|BAG57069.1| unnamed protein product [Homo sapiens]
Length = 329
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 153 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 207
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 208 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 265
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VFEK L +P WR+ +I
Sbjct: 266 L--EYVVFEKQLTNPYGSWRMHTKI 288
>gi|402899954|ref|XP_003912948.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Papio anubis]
Length = 329
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 153 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 207
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+E + ++ R + + V+ Q+T+ +Q YD G + G + V
Sbjct: 208 FVESLEPSHVVQVRCSSM--MNQGNVYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDV 265
Query: 277 RDIWVFEKSLFHPGAYWRLCGRI 299
+ VFEK L +P WR+ +I
Sbjct: 266 LEYVVFEKQLTNPYGSWRMHSKI 288
>gi|389690672|ref|ZP_10179565.1| hypothetical protein MicloDRAFT_00016760 [Microvirga sp. WSM3557]
gi|388588915|gb|EIM29204.1| hypothetical protein MicloDRAFT_00016760 [Microvirga sp. WSM3557]
Length = 240
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 10/147 (6%)
Query: 150 AIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
IA++ + G+ +F A Y+ I T A GD+ +L+ ++ +Y + I +RE
Sbjct: 98 GIARV-EPGFDAGEFLEGAKSAYEMIVTAFAQGDRKTLKDLLSRDVYEGFERAITERERR 156
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+V + +A + G + L Q+ + FL+K D+ G V G
Sbjct: 157 GETVETTFVS------IDKAEMAGAE---LQGKTAQIVVRFLSKLITATRDASGTVVDGS 207
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F ++L + W+L
Sbjct: 208 PETVADVTDVWTFARTLGNRDPNWQLV 234
>gi|380790535|gb|AFE67143.1| 39S ribosomal protein L45, mitochondrial [Macaca mulatta]
gi|383412219|gb|AFH29323.1| 39S ribosomal protein L45, mitochondrial [Macaca mulatta]
gi|384943776|gb|AFI35493.1| 39S ribosomal protein L45, mitochondrial [Macaca mulatta]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VFEK L +P WR+ +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHSKI 265
>gi|410219432|gb|JAA06935.1| mitochondrial ribosomal protein L45 [Pan troglodytes]
gi|410251456|gb|JAA13695.1| mitochondrial ribosomal protein L45 [Pan troglodytes]
gi|410294886|gb|JAA26043.1| mitochondrial ribosomal protein L45 [Pan troglodytes]
gi|410329495|gb|JAA33694.1| mitochondrial ribosomal protein L45 [Pan troglodytes]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VFEK L +P WR+ +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265
>gi|333470683|ref|NP_115727.4| 39S ribosomal protein L45, mitochondrial [Homo sapiens]
gi|29611869|sp|Q9BRJ2.2|RM45_HUMAN RecName: Full=39S ribosomal protein L45, mitochondrial;
Short=L45mt; Short=MRP-L45; Flags: Precursor
gi|120660040|gb|AAI30383.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
gi|120660352|gb|AAI30385.1| Mitochondrial ribosomal protein L45 [Homo sapiens]
gi|313883266|gb|ADR83119.1| mitochondrial ribosomal protein L45 [synthetic construct]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VFEK L +P WR+ +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265
>gi|418298009|ref|ZP_12909849.1| hypothetical protein ATCR1_10828 [Agrobacterium tumefaciens
CCNWGS0286]
gi|355537379|gb|EHH06639.1| hypothetical protein ATCR1_10828 [Agrobacterium tumefaciens
CCNWGS0286]
Length = 232
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/204 (19%), Positives = 83/204 (40%), Gaps = 34/204 (16%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAYAIA----KLRKS 157
++PY+PR+ + +R D R + D + + S + R
Sbjct: 37 FDPYSPRDVAKGPVADDNKVVTLPKRSEAEDENRFAEADALAPVDSPLNASLREVMTRDP 96
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+ ++F A Y+ I A+GD+ +L+ ++++++ + I +RE
Sbjct: 97 SFGPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFEAAISEREG--------- 147
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
+ +++ +G+++ D+ + V Q+TL +++ YD G V GD
Sbjct: 148 -----RGEVVKSTFVGIEKADITQAGVRDSEVQITLRIISQLISATYDKDGKLVDGDPDT 202
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + + W+L
Sbjct: 203 VAEVDDIWTFSRDIRSRDPNWKLI 226
>gi|47077699|dbj|BAD18730.1| unnamed protein product [Homo sapiens]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 130 ANFKIKDFPGKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VFEK L +P WR+ +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265
>gi|85714085|ref|ZP_01045074.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
gi|85699211|gb|EAQ37079.1| hypothetical protein NB311A_08013 [Nitrobacter sp. Nb-311A]
Length = 234
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 9/143 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ S + F + A Y+ I ANGD+ +L+ ++ +Y + IK RE +
Sbjct: 96 QDSSFDPGHFLSGARSAYEMIVLAFANGDRRTLKDLLSSDVYESFDAAIKDRERLEQKTE 155
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ + LIG + D + QLT+ F+++ D G V G+ +
Sbjct: 156 TRFVS------IDKVELIGAELRDGAE---QLTVRFISQMISVTRDKTGAIVDGNPERIS 206
Query: 275 LVRDIWVFEKSLFHPGAYWRLCG 297
+ D+W F + + W+L G
Sbjct: 207 DITDVWTFAREISSRDPNWKLVG 229
>gi|146337371|ref|YP_001202419.1| hypothetical protein BRADO0204 [Bradyrhizobium sp. ORS 278]
gi|146190177|emb|CAL74169.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
Length = 233
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ + + F T A Y+ I ANGD+ +LR ++ ++Y + IK RE
Sbjct: 97 DASFDPRHFLTGARSAYEMIVLAFANGDRRALRDLLSSEVYDSFDAVIKDREKNEQKTET 156
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
+ A L+ + D QLT+ F+++ D G V G+ K
Sbjct: 157 RFVS------IDTAELVNAEARDRT---AQLTVRFVSQMISVTRDKTGNIVDGNPDKVAD 207
Query: 276 VRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + W+L G
Sbjct: 208 ITDIWTFARDTGSRDPNWKLVG 229
>gi|365884925|ref|ZP_09423951.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
gi|365286473|emb|CCD96482.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 375]
Length = 234
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F T A Y+ I ANGD+ +LR ++ ++Y + IK RE +
Sbjct: 101 FDPRHFLTGARSAYEMIVLAFANGDRRALRDLLSSEVYDSFDAVIKDREKQEQKTETRFV 160
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
A L+ + D QLT+ F+++ D G V G+ K + D
Sbjct: 161 S------IDTAELVNAEARDRT---AQLTVRFVSQMISVTRDKMGNIVDGNPDKVADITD 211
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW F + W+L G
Sbjct: 212 IWTFARDTGSRDPNWKLVG 230
>gi|312115344|ref|YP_004012940.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
vannielii ATCC 17100]
gi|311220473|gb|ADP71841.1| import inner membrane translocase subunit Tim44 [Rhodomicrobium
vannielii ATCC 17100]
Length = 233
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ F A Y+ I T A GD+ +LR + +++ + I RE+ +V + I
Sbjct: 100 FDTASFVNGAKIAYESIITAYAKGDRETLRHLLAPEVFDSFNVVINDREASGETVEFHFI 159
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I + A+L+G Q+ + F++ D G V GD V D
Sbjct: 160 G-ISSSEIVEAQLLGR--------VAQVKVRFVSDLVTATRDKHGEVVDGDDKAVRQVTD 210
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW F + + P W+L
Sbjct: 211 IWTFSRDVSSPNPNWQLVA 229
>gi|268575792|ref|XP_002642876.1| Hypothetical protein CBG15146 [Caenorhabditis briggsae]
gi|74784622|sp|Q616T6.1|RM45_CAEBR RecName: Full=Probable 39S ribosomal protein L45, mitochondrial;
Flags: Precursor
Length = 361
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Query: 155 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
+K G+ K + F +A D+Y+ + M DK + + +TE ++ + +++
Sbjct: 167 KKQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVEN-----G 221
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
SV +EL+ + R + R N + Q+T+ +QK YD G + G +
Sbjct: 222 SVRFELVSIVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLALYDRFGGLILGSED 280
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+E V + VFE + WRL G+I
Sbjct: 281 EEKDVVEYVVFENHIAVVDGEWRLHGKI 308
>gi|402848278|ref|ZP_10896542.1| Transporter [Rhodovulum sp. PH10]
gi|402501432|gb|EJW13080.1| Transporter [Rhodovulum sp. PH10]
Length = 248
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I + A GD+ +LR +++ ++ + I+ RES +V +
Sbjct: 114 FDPKHFLAGARAAYEMIVSAFAEGDRRTLRNLLSKDVFDGFEAAIRDRESRGETVETRFV 173
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I + A L G RN Q+TL F+++ D G V G + K V D
Sbjct: 174 S-IDEAAITGAELRG--RN------AQVTLRFVSQLVTATRDRAGAVVDGHEDKVTEVTD 224
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F + + W+L
Sbjct: 225 VWTFARDVTSRDPNWKLV 242
>gi|222147023|ref|YP_002547980.1| Membrane associated transporter protein [Agrobacterium vitis S4]
gi|221734013|gb|ACM34976.1| Membrane associated transporter protein [Agrobacterium vitis S4]
Length = 232
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I T A GD+ SL+ ++ ++Y I +RE
Sbjct: 98 FVPKEFLNGARMAYEMIVTAFAAGDRKSLKDLLSREVYDGFDAAITEREQ---------- 147
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ +++ +G+D+ ++ V Q+T+ +++ YDS+G + GD
Sbjct: 148 ----RGEVMKSTFVGIDKAEITSAEVRDQEVQITVRLVSQLISATYDSQGAVIEGDAESV 203
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + W+L
Sbjct: 204 GDVNDIWTFARDTRSRDPNWKLIA 227
>gi|188580934|ref|YP_001924379.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
gi|179344432|gb|ACB79844.1| import inner membrane translocase subunit Tim44 [Methylobacterium
populi BJ001]
Length = 242
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ G+ + F A Y+ I T A GD+ +LR ++ ++ + I +RE
Sbjct: 105 EPGFDPRAFLEGAKGAYETIVTAFAKGDRKTLRALLSREVCEGFERAISEREK------- 157
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDK 270
+ T I +D+ ++ V V Q+T+ FL+ D+ G + G+
Sbjct: 158 -------RRETAETTFISIDKAEIAAVEVKNRAAQITVRFLSNLITATRDADGKVIDGNA 210
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W F ++L W+L
Sbjct: 211 ETGVEVPDVWTFARTLGSRDPNWQLV 236
>gi|220921009|ref|YP_002496310.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
gi|219945615|gb|ACL56007.1| import inner membrane translocase subunit Tim44 [Methylobacterium
nodulans ORS 2060]
Length = 241
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
++ + + F A Y+ I A GD+ +L+ ++ ++ + I+ RE +V
Sbjct: 103 QEPSFDPRAFTDGAKVAYETIVMAFAKGDRKTLKSLLSREVADGFERAIQARERAGQTVE 162
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
+ RA ++GVD N+V Q+T+ FL+K + +G V G V
Sbjct: 163 TTFVS------IDRAEIVGVDVR--NRV-AQITVRFLSKLITATRNPQGAVVDGSPDTVV 213
Query: 275 LVRDIWVFEKSLFHPGAYWRLC 296
V D+W F ++L W+L
Sbjct: 214 DVTDVWTFARTLGSRDPNWQLV 235
>gi|410051583|ref|XP_003953121.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
mitochondrial [Pan troglodytes]
Length = 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F +A D++ E + + N D L VTE + + +IK + +V W
Sbjct: 213 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 267
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 274
+E + ++ R + + V+ Q+T+ +Q YD G + G D K+V
Sbjct: 268 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 325
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
L + VF+K L +P WR+ +I
Sbjct: 326 L--EYVVFQKQLTNPYGSWRMHTKI 348
>gi|241999542|ref|XP_002434414.1| conserved hypothetical protein [Ixodes scapularis]
gi|215497744|gb|EEC07238.1| conserved hypothetical protein [Ixodes scapularis]
Length = 333
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 16/201 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSK 161
+ S G +++PY P E +++G + + + +S + K+R + +
Sbjct: 93 IYTSCSGGLFDPYVPPEGDGKMS-LLSQEGAMQRMRRLEKKGRSVMNVRKIRSYEDDFHL 151
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+F +A +Y +++ +A +K L + VTE Y L + + ++ W+ I+ +
Sbjct: 152 AEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVVNK-----TLRWQFIKSL 206
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW- 280
R + R + D +F Q+T+ +Q YD G + G EV+ +D+
Sbjct: 207 EPPRAVHVRCEDLISKD--NMFGQVTVRMHTQQTLAVYDRFGRLMHGS---EVMAKDVLE 261
Query: 281 --VFEKSLFHPGAYWRLCGRI 299
VFEK L WR+ +I
Sbjct: 262 YVVFEKHLSDLYGTWRVHSKI 282
>gi|395532629|ref|XP_003768372.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Sarcophilus
harrisii]
Length = 385
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
++ G ++ +++ + S AI KLR+ + + + F +A ++ E + + D
Sbjct: 178 LSKAGLKQKTENLKQGVISQLAIRKLREYDADFRVKTFPEKAQQIFVEAHQCLNTSDHDR 237
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L TE+ + + +++ + +V W +E + R + R + N+ N ++ Q+
Sbjct: 238 LHALATERCFPEMVWDLRLK-----TVRWSFVESLEPPRVVHVRCPNMV-NEGN-LYGQV 290
Query: 247 TLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
T+ +Q YD G + G D K+VL + VFE+ L +P WR+ G+I
Sbjct: 291 TVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLTNPYGTWRMHGKI 343
>gi|414164581|ref|ZP_11420828.1| hypothetical protein HMPREF9697_02729 [Afipia felis ATCC 53690]
gi|410882361|gb|EKS30201.1| hypothetical protein HMPREF9697_02729 [Afipia felis ATCC 53690]
Length = 234
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ Q F + A Y+ I ANGD +L+ ++ +Y ++ IK RE V +
Sbjct: 100 FNAQHFLSGAKSAYEMIVLAFANGDHRTLKDLLSADVYDGFESVIKGREQRSEKVETKFA 159
Query: 219 EPIIKMRTLRARLIGV-DRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
I K + A GV DR LT+ F+++ D G + G+ K V
Sbjct: 160 S-IDKAELVSA---GVRDR------IAHLTVRFVSQMITATRDKDGAVIDGNPEKLTDVT 209
Query: 278 DIWVFEKSLFHPGAYWRLCG 297
D+W F + + W+L G
Sbjct: 210 DVWTFSRDVSSRDPNWKLVG 229
>gi|452965413|gb|EME70436.1| hypothetical protein H261_08138 [Magnetospirillum sp. SO-1]
Length = 219
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 11/164 (6%)
Query: 135 RRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT 192
RR+ + E +A +R + G+ F A ++ + A+GDK +L+ +
Sbjct: 58 RRSAAEPPAETPVGQGLAAIRAADRGFDLDGFLGGAKAAFEMVVIAFAHGDKATLQPLLA 117
Query: 193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLA 252
+Y + I R ++ EL+ +R+ G+D F LT+ F++
Sbjct: 118 PDVYRHFSDAIDARRQHGETLQTELV----GIRSAELVEAGMDGR-----FAALTIRFVS 168
Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+Q D+KG V G+ + + V D+W F + W L
Sbjct: 169 EQVNALRDAKGEVVEGNPERVIDVIDLWTFRRDTRSADPNWALA 212
>gi|312078188|ref|XP_003141630.1| ribosomal protein L45 [Loa loa]
gi|307763207|gb|EFO22441.1| ribosomal protein L45 [Loa loa]
Length = 388
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 149 YAIAKLRK----SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
+ + ++RK +S + F A ++Y E + + DKT+L+K +TE + + +++
Sbjct: 196 HGMKRIRKRKGFENFSVKTFPATADEIYIEAHRALMTRDKTALQKYITEAAFGKMWPDVE 255
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
SV WELI+ I R + R N + Q+ + QK YD G
Sbjct: 256 N-----GSVIWELIKHIEPSRVVSVRCADFPHQSGNDI-AQIIVRMYTMQKIALYDRFGR 309
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ G + + V + VFE + WRL ++
Sbjct: 310 LILGTEQEAKPVLEYVVFENHIASFDGIWRLHDKV 344
>gi|407781144|ref|ZP_11128364.1| hypothetical protein P24_02971 [Oceanibaculum indicum P24]
gi|407208570|gb|EKE78488.1| hypothetical protein P24_02971 [Oceanibaculum indicum P24]
Length = 224
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 19/149 (12%)
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
KL + +++F A ++ I ANGDK +LR + +Y I RE+
Sbjct: 84 KLADGSFEEKQFANGARAAFEMIVQAFANGDKDTLRPLLANDVYDRFVGAIDAREA---- 139
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKV-----FVQLTLEFLAKQKFEAYDSKGVTVA 267
+ TL RL+ ++ D+ + ++T+EF+++Q +++G +
Sbjct: 140 ----------RKETLETRLLSLNAADITEAQMKGSVAEVTVEFVSEQVNLTRNAEGEVID 189
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
GD V DIW F + W L
Sbjct: 190 GDPDGIESVVDIWTFRRDTRSDDPNWLLS 218
>gi|56416441|ref|YP_153515.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
gi|56387673|gb|AAV86260.1| hypothetical protein AM113 [Anaplasma marginale str. St. Maries]
Length = 217
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 142 ILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201
+ ++ S + K R G+S + F + ++ I ++ G+ L +++ M+ +
Sbjct: 68 VEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSLLSKDMHDSFVR 127
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
EI++R+S + + +++ I+ + A L G +T++F+ +Q D+
Sbjct: 128 EIERRKSAGHT-HEDVVVSIVSQKVTSAELKGNS--------AAITVQFVTEQINVVRDA 178
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G V G +K + D W FE+ + G W L
Sbjct: 179 GGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLT 213
>gi|409402222|ref|ZP_11251815.1| putative transporter [Acidocella sp. MX-AZ02]
gi|409129177|gb|EKM99043.1| putative transporter [Acidocella sp. MX-AZ02]
Length = 222
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ F T+A ++ I T ANGD+ +L+ +T +Y I RE+ E I
Sbjct: 90 FDPPHFITQAEAAFRAIVTGFANGDRAALQALLTPHVYETFAAAIAAREAAGERQRTE-I 148
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
+ I + A+L G DL V V+ F++ Q E D G + G + V D
Sbjct: 149 KSIPSISIEDAQLSG----DLAVVVVR----FISAQTNEKLDQNGTPIPG-SAETGDVSD 199
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W FE+ L P WRL
Sbjct: 200 LWTFERHLRGPDKNWRLA 217
>gi|408788965|ref|ZP_11200677.1| hypothetical protein C241_24295 [Rhizobium lupini HPC(L)]
gi|424911574|ref|ZP_18334951.1| hypothetical protein Rleg13DRAFT_03819 [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847605|gb|EJB00128.1| hypothetical protein Rleg13DRAFT_03819 [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408485131|gb|EKJ93473.1| hypothetical protein C241_24295 [Rhizobium lupini HPC(L)]
Length = 232
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----- 156
++PY+PR+ + +R D R + D + SA A LR+
Sbjct: 37 FDPYSPRDVAKGPVTDDNKVVTLPKRAEAEDENRFAEVDALAPADSALN-ASLREVMTKD 95
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ ++F A Y+ I A+GD+ +L+ ++++++ I +RE
Sbjct: 96 PSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFEGFDAAISEREG-------- 147
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVF-----VQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
+ +++ +G+++ D+ + VQ+TL +++ YD G V GD
Sbjct: 148 ------RGEVVKSTFVGIEKADITQAGIRDSEVQITLRIVSQLISATYDKDGKLVDGDPD 201
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + + W+L
Sbjct: 202 AVAEVDDIWTFSRDIRSRDPNWKLIA 227
>gi|328545867|ref|YP_004305976.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum
SL003B-26A1]
gi|326415607|gb|ADZ72670.1| Import inner membrane translocase subunit Tim44 [Polymorphum gilvum
SL003B-26A1]
Length = 242
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I T A GD+ +L+ +++++Y I +RE+
Sbjct: 108 FEPEQFLQGARAAYEMIVTAFAEGDRKTLKNLLSKEVYDGFVTAISEREA---------- 157
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T+ + +G+D+ D L Q+T+ ++ D G V GD ++
Sbjct: 158 ----RGETIESTFVGIDKADIVEAALKGSVAQVTVRLQSELISATRDKDGHVVDGDPSRV 213
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + W+L
Sbjct: 214 TEVVDIWTFARDTTSRDPNWKLV 236
>gi|254994672|ref|ZP_05276862.1| hypothetical protein AmarM_00445 [Anaplasma marginale str.
Mississippi]
Length = 217
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 142 ILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201
+ ++ S + K R G+S + F + ++ I ++ G+ L +++ M+ +
Sbjct: 68 VEQIASVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSLLSKDMHDSFVR 127
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
EI++R+S + + +++ I+ + A L G +T++F+ +Q D+
Sbjct: 128 EIERRKSAGHT-HEDVVVSIVSQKVTSAELKGNS--------AAITVQFVTEQINVVRDA 178
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G V G +K + D W FE+ + G W L
Sbjct: 179 GGQVVDGSTSKVNTIEDTWKFERDITTSGRRWYLT 213
>gi|328767960|gb|EGF78008.1| hypothetical protein BATDEDRAFT_91206 [Batrachochytrium
dendrobatidis JAM81]
Length = 264
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 14/173 (8%)
Query: 134 WRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTE 193
W R K ++L S Y + K G+ + F EA LY +N A GD+ L VT+
Sbjct: 92 WERIKK-LVLATWSVYQV-KTTTKGWKPRAFAIEAEKLYIAMNKAYARGDRAELSNCVTD 149
Query: 194 KMYSALKNEIKQRESM----WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLE 249
M SAL EIK + + W S + ++ + T + + + D+ Q+T+
Sbjct: 150 GMMSALSPEIKAMQRIGKFVWDSNGSDRRPQVVHLATAK---VATETGDMR--LSQITVR 204
Query: 250 FLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAY--WRLCGRIK 300
+Q Y + T +V I V EK L A W++ G+I+
Sbjct: 205 VNVRQSMATYKDDTLIAGNPDTYTSIVEHI-VMEKWLDGKWANRPWKIAGKIQ 256
>gi|395778992|ref|ZP_10459503.1| hypothetical protein MCU_01204 [Bartonella elizabethae Re6043vi]
gi|423714840|ref|ZP_17689064.1| hypothetical protein MEE_00265 [Bartonella elizabethae F9251]
gi|395417167|gb|EJF83519.1| hypothetical protein MCU_01204 [Bartonella elizabethae Re6043vi]
gi|395431059|gb|EJF97087.1| hypothetical protein MEE_00265 [Bartonella elizabethae F9251]
Length = 230
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD++ L+ + + ++ + I+QRE + + +
Sbjct: 96 FSPQSFIKGAGIAYEMIVTAFAKGDRSQLKSLLCQDVFESFCTAIEQREKNKERIEFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A + ++N+L LT+ +++ Y+ +G + GD V +RD
Sbjct: 156 -GINKIEFVAAAI--QEKNEL------LTIRIISEMISVTYNEQGERIDGDPDAIVEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
IW F ++ W+L
Sbjct: 207 IWTFVRNSLSSDPNWKL 223
>gi|163867402|ref|YP_001608597.1| hypothetical protein Btr_0112 [Bartonella tribocorum CIP 105476]
gi|161017044|emb|CAK00602.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 230
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD++ L+ + + ++ + I+QRE N E I
Sbjct: 96 FSPQSFIKGAQIAYEMIVTAFAKGDRSQLKSLLCQDVFESFCAVIEQREK-----NKERI 150
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
E +G+++ + +Q LT+ +++ Y+ +G + G+
Sbjct: 151 E---------FTFVGINKIEFVSAAIQEKDELLTIRIISEMISVTYNEQGERIDGNPDAI 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RDIW F ++ P W+L
Sbjct: 202 VEIRDIWTFVRNSLSPDPNWKL 223
>gi|269959143|ref|YP_003328932.1| Tim44-like domain-containing protein [Anaplasma centrale str.
Israel]
gi|269848974|gb|ACZ49618.1| Tim44-like domain containing protein [Anaplasma centrale str.
Israel]
Length = 217
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 144 ELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
++ S + K R +S + F + ++ I + + G+ L + MY++ E+
Sbjct: 70 QISSVFEAIKARNKDFSVKHFIEGSAAAFEAIVSALNQGNTELLSSLLNRHMYNSFVKEV 129
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
++R V+ +++ I + A L G F +T++F+ +Q D +G
Sbjct: 130 ERRRDA-GRVHEDVVVSITSQKVTNAELEGN--------FATITVQFVTEQINVVRDVEG 180
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V G +K ++ D W FE+ + G W L
Sbjct: 181 QVVDGSTSKVNVIEDTWKFERDVTAAGRRWYLA 213
>gi|392380879|ref|YP_005030075.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356875843|emb|CCC96591.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 219
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 140 DIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199
D + L +A K + ++ F A ++ I A GD +LR +++++Y
Sbjct: 66 DEPVSLATALEQIKAADPSFDEKYFLQGARGAFQMIVEAFAKGDTATLRPLLSDEVYDNF 125
Query: 200 KNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAY 259
+++R+S ++ IE I + AR+ G R L +T++F+++Q
Sbjct: 126 ARAVRERQSAGETLETR-IETITDADVVEARMDG--RTAL------VTVKFVSEQMNVVR 176
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+S G V GD V D+W F ++ W L
Sbjct: 177 NSAGAVVDGDPNSVVEAVDVWTFARNTRAGDPNWALV 213
>gi|325291461|ref|YP_004277325.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
gi|418409078|ref|ZP_12982391.1| hypothetical protein AT5A_17711 [Agrobacterium tumefaciens 5A]
gi|325059314|gb|ADY63005.1| hypothetical protein AGROH133_02812 [Agrobacterium sp. H13-3]
gi|358004395|gb|EHJ96723.1| hypothetical protein AT5A_17711 [Agrobacterium tumefaciens 5A]
Length = 232
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/205 (19%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAYAIA----KLRKS 157
++PY PR+ + +R D R + D + + +A + +
Sbjct: 37 FDPYTPRDVAKGPVTDDNKVVTLPKRSEAEDENRFAEADALAPVDTALNTSLRELMTKDP 96
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+ ++F A Y+ I A+GD+ +L+ ++++++ + I +RES
Sbjct: 97 TFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFEAAISERES--------- 147
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
+ +++ +G+++ D+ + + Q+TL +++ YD G V GD
Sbjct: 148 -----RGEVVKSTFVGIEKADITQAGIRDSEEQITLRIVSQLISATYDKDGKLVDGDPDA 202
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + + W+L
Sbjct: 203 VAEVDDIWTFSRDVRSRDPNWKLIA 227
>gi|15963761|ref|NP_384114.1| translocase transmembrane protein [Sinorhizobium meliloti 1021]
gi|334318041|ref|YP_004550660.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|384531167|ref|YP_005715255.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
gi|384537884|ref|YP_005721969.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
meliloti SM11]
gi|433611803|ref|YP_007188601.1| hypothetical protein C770_GR4Chr0009 [Sinorhizobium meliloti GR4]
gi|15072936|emb|CAC41395.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
meliloti 1021]
gi|333813343|gb|AEG06012.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti BL225C]
gi|334097035|gb|AEG55046.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti AK83]
gi|336034776|gb|AEH80708.1| Import inner membrane translocase subunit TIM44 [Sinorhizobium
meliloti SM11]
gi|429549993|gb|AGA05002.1| hypothetical protein C770_GR4Chr0009 [Sinorhizobium meliloti GR4]
Length = 233
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 113 YEPYAPRE------------AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR----- 155
++PY+PR+ + RR D R +I+ + + A+LR
Sbjct: 37 FDPYSPRDIAQGPEAKDNGKVVQLPRRETAEDESRYAAIEIVAKAGTPLN-AQLRAMTDA 95
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
++ +F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+
Sbjct: 96 DPNFNPAEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIAEREA------- 148
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDK 270
K +++ +G+D+ D+ ++ +T+ +++ YD +G V GD
Sbjct: 149 -------KGEVVKSTFVGIDKADIVHAEIKDAEENITVRIISQLISATYDKQGKLVDGDA 201
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + + W+L
Sbjct: 202 DSVAEVNDLWTFARDIRSRDPNWKLIA 228
>gi|443683174|gb|ELT87519.1| hypothetical protein CAPTEDRAFT_222501 [Capitella teleta]
Length = 327
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 146 KSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS--LRKAVTEKMYSALKN 201
KS A+ K+++ +S +F + A ++Y E + L+ + +K L VTEK Y +
Sbjct: 135 KSMNAVRKIKQYEDDFSVSEFPSLAQEIYLEAHALLEDVEKNKDRLHDLVTEKAYPDMVW 194
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
++K + W V E +EP +R I + +F Q+T+ F +Q YD
Sbjct: 195 KLKNKTFRWKFV--ESLEPAKVVRVRAGNAISKE-----NMFGQVTVRFHTQQTLALYDR 247
Query: 262 KGVTVAGDKTKEVLVRDIW---VFEKSLFHPGAYWRLCGRI 299
G + G E LV+D VFEK L + WRL +I
Sbjct: 248 FGRLMVG---SEHLVKDCLEYVVFEKHLSEEYSEWRLHAKI 285
>gi|296115110|ref|ZP_06833751.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
gi|295978211|gb|EFG84948.1| import inner membrane translocase subunit Tim44 [Gluconacetobacter
hansenii ATCC 23769]
Length = 227
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 40/178 (22%)
Query: 121 AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMA 180
AI ++ FT DG+ R +D ++ AYA+
Sbjct: 81 AIAARQQGFTPDGFIRQVEDAFRQIVQAYAV----------------------------- 111
Query: 181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
GD +LR+ +TE ++A + I R+ ++ E I I M + A L D++
Sbjct: 112 -GDIETLRQHLTESTFTAFEAAIVSRQQAHETMRSE-IRDITDMAIIDAEL----SPDVS 165
Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDIWVFEKSL--FHPGAYWRL 295
+ ++ + ++ Q D G V+G D E D+W FE+ L PGA WRL
Sbjct: 166 VPYARIEVRIVSDQVSVTLDQNGQPVSGVDAVTE--FSDLWTFERILGAATPGAQWRL 221
>gi|114328998|ref|YP_746155.1| transporter [Granulibacter bethesdensis CGDNIH1]
gi|114317172|gb|ABI63232.1| transporter [Granulibacter bethesdensis CGDNIH1]
Length = 231
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 27/217 (12%)
Query: 83 KRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDII 142
+R +P+ PA Q G PG P A+ R + D T
Sbjct: 36 RRVGFERPEVPANQGQTGN-----RIPGLPVRLRRPDAAVAEARTYVLPDASSPT----- 85
Query: 143 LELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALK 200
+A++++ + +F A ++ I T A G++ +LR +TE ++
Sbjct: 86 -----GQVLARMKEVDRSFDAVRFLNNAEQAFRVIVTAYAQGEREALRPLLTEATFTIFC 140
Query: 201 NEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 260
I RE + E I+ I +R ARL + LT+ F++ Q +
Sbjct: 141 QAIDAREQDGARQQTE-IQSIRDIRIENARL--------EQTQAALTIRFVSDQHNVMLN 191
Query: 261 SKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
G V G + +V D+W FE+ L WRL G
Sbjct: 192 RTGEPVEGVEGLTEIV-DVWTFERDLASRDPTWRLSG 227
>gi|291237324|ref|XP_002738585.1| PREDICTED: mitochondrial ribosomal protein L45-like [Saccoglossus
kowalevskii]
Length = 318
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 84/210 (40%), Gaps = 37/210 (17%)
Query: 103 KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ 162
++ IS G I++PY P E DG K + + + +L+ G+S
Sbjct: 91 QIIISCTGDIFQPYVPPEG----------DG----KSTPLSTEGAKQRLERLKHVGFS-- 134
Query: 163 KFYTEAVDLYK--EINTLMANGDKTSLRKAVTEKMYSALKNEIKQ------RESM----- 209
VDL K + + D + + K +SAL++ IK E M
Sbjct: 135 -----TVDLRKIRKFDPEFNTKDFAKQAQHIFIKAHSALQD-IKNFLLMNIHEDMVWGFK 188
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+ +V W +E I K R + R D + Q T+ F +KQ YD G + G
Sbjct: 189 YKTVRWNWVESIEKPRVVHIRC--TDMISKGNTYAQATVRFHSKQTLAIYDRFGRIMQGS 246
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+T V + VFEK L WR+ G+I
Sbjct: 247 ETSPKDVLEYVVFEKHLMDKYGSWRIHGKI 276
>gi|442754957|gb|JAA69638.1| Putative mitochondrial/chloroplast ribosomal protein l45 [Ixodes
ricinus]
Length = 296
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 16/201 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSK 161
+ S G +++PY P E +++G + + + +S + K+R + +
Sbjct: 93 IYTSCSGGLFDPYVPPEGDGKMS-LLSQEGAMQRMRRLEKKGRSVMNVRKIRSYEDDFHL 151
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+F +A +Y +++ +A +K L + VTE Y L + + ++ W+ I+ +
Sbjct: 152 AEFAEQAQQIYIDVHRALAEKNKDKLHELVTENCYPELMQNVVDK-----TLRWQFIKSL 206
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW- 280
R + R D +F Q+T+ +Q YD G + G EV+ +D+
Sbjct: 207 EPPRAVHVRC--EDLISKANMFGQITVRMHTQQTLAVYDRFGRLMHGS---EVMAKDVLE 261
Query: 281 --VFEKSLFHPGAYWRLCGRI 299
VFEK L WR+ +I
Sbjct: 262 YVVFEKHLSDLYGTWRIHSKI 282
>gi|429767982|ref|ZP_19300160.1| Tim44-like domain protein [Brevundimonas diminuta 470-4]
gi|429189624|gb|EKY30449.1| Tim44-like domain protein [Brevundimonas diminuta 470-4]
Length = 205
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L +A A K R + +F A Y+ I A GD+ +LR +T+K+ + + I
Sbjct: 60 LTAAIAGLKARDPNFDPHRFLEGARQAYETIVGAYAKGDREALRPLLTDKVMGSFEAGIA 119
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAY 259
RE+ + + EL+ P R DL + + FLA+ +
Sbjct: 120 AREARGDAESAELVHP--------------PRADLELATAEGDRALAKVRFLAEVRGSLT 165
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
S G TV T+E +IW FE+ L W L
Sbjct: 166 PSGGETV----TEERRTAEIWTFERRLGASDPNWALA 198
>gi|339024918|ref|ZP_08646807.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter tropicalis NBRC 101654]
gi|338750077|dbj|GAA10111.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter tropicalis NBRC 101654]
Length = 226
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
+ + + ++ Q+F ++++ T A GD+T+L+ +T +Y++ + I RE+
Sbjct: 84 RAQDASFTPQQFLAGVQTAFRQVVTAFAEGDRTTLKNRLTPAVYASFEAAIASREAAGEK 143
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFV----QLTLEFLAKQKFEAYDSKGVTVAG 268
E+ +T+R+ +G++ L + V + + ++ Q + G ++G
Sbjct: 144 QRTEI-------KTIRS--LGIEDVRLTPLAVGVGASVDVRIVSDQISLVLGADGQPISG 194
Query: 269 -DKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D E D+W FE+ L G+ WRL
Sbjct: 195 MDAVTE--FSDLWTFERLLGTAGSSWRLA 221
>gi|402591995|gb|EJW85924.1| 39S ribosomal protein L45 [Wuchereria bancrofti]
Length = 388
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 149 YAIAKLRK----SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
+ I ++RK +S + F A ++Y E + + DKT+L+K +TE + + +++
Sbjct: 196 HGIKRIRKRKGFENFSIKTFPATADEIYIEAHRALMTRDKTALQKYITETAFGKMWPDVE 255
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
SV WEL++ I R + R N + Q+ + QK YD G
Sbjct: 256 N-----GSVVWELMKHIEPSRVVSVRCADFPHQSGNDI-AQIIVRMYTVQKIALYDRFGR 309
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ G + + V + VFE + WRL ++
Sbjct: 310 LILGTEHEVKPVLEYVVFENHIASFDGAWRLHDKV 344
>gi|335033778|ref|ZP_08527143.1| hypothetical protein AGRO_1122 [Agrobacterium sp. ATCC 31749]
gi|333795069|gb|EGL66401.1| hypothetical protein AGRO_1122 [Agrobacterium sp. ATCC 31749]
Length = 232
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ + ++F A Y+ I A+GD+ +L+ ++++++ + I +RES
Sbjct: 94 KDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFEAAISERES------ 147
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGD 269
+ +++ +G+++ D+ + V Q+TL +++ YD G V GD
Sbjct: 148 --------RGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKLVDGD 199
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
V DIW F + + W+L
Sbjct: 200 PDAVAEVDDIWTFSRDIRSRDPNWKLIA 227
>gi|348562633|ref|XP_003467114.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Cavia
porcellus]
Length = 307
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 115/272 (42%), Gaps = 36/272 (13%)
Query: 49 SCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAP---------AQARQM 99
+CL + G W+R + +S+ L +KRF PK AR+
Sbjct: 10 TCLTRALGW--WSRQPILVTQSTAV---LPVRTKKRFRPPPPKESKYQTQKEFLEHARKA 64
Query: 100 GAL--------KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAI 151
G + + ++ I++ Y P E +++G ++ + + + S ++
Sbjct: 65 GLVIPPERLERPIHLACTAGIFDAYVPPEGD-GRSSSLSKEGLKQRTERLKKNVTSQLSV 123
Query: 152 AKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
K+++ + + + F +A D++ E + + N D L VTE + + +++
Sbjct: 124 RKIKEYDTSFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLR----- 178
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG- 268
+ +V W +E + + + R + ++ Q+T+ ++Q YD G + G
Sbjct: 179 YKTVRWNFVESLEPAQVTQVRCSSLVTQ--GNMYGQVTVRMHSRQTLAIYDRFGRLMYGQ 236
Query: 269 -DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D K+VL + VFE+ L +P WR+ +I
Sbjct: 237 EDVPKDVL--EYVVFERQLSNPYGSWRMHAKI 266
>gi|83944953|ref|ZP_00957319.1| hypothetical protein OA2633_09999 [Oceanicaulis sp. HTCC2633]
gi|83851735|gb|EAP89590.1| hypothetical protein OA2633_09999 [Oceanicaulis sp. HTCC2633]
Length = 219
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ +F A Y+ I A GD+ +L +TE++ A I RE NW +
Sbjct: 86 FDPDEFRKGARAAYEMIVLAYAKGDREALEPLLTERVKKAYDQAIAAREEK----NWTVT 141
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I ++++ + LN ++ + F + E +++G V GD T V +
Sbjct: 142 TEIDRIKSAE-----ISEASLNDNRAKVKIAFSVELASETRNAQGDVVEGDLTTLKTVDE 196
Query: 279 IWVFEKSLFHPGAYWRLCG 297
IW FE+ + WRL G
Sbjct: 197 IWSFERDVTSENPNWRLSG 215
>gi|324518944|gb|ADY47245.1| 39S ribosomal protein L45, partial [Ascaris suum]
Length = 365
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%)
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDI---ILEL 145
P Q R ++++ S + +PY AP E +PF D + +I L L
Sbjct: 109 PYKEVQPRSWNEGQITLQSFYGVVDPYVAPEEPLPFVVPSALTDSVKLKGQEIKERALHL 168
Query: 146 KSAYAIAKLR---KSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199
Y + R K G+ K + F A +Y E + + DK L K +TE + +
Sbjct: 169 WHNYKNGRSRIRKKEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKM 228
Query: 200 KNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAY 259
+++ SV WE++E R + R N + QLT+ QK Y
Sbjct: 229 WPDVEN-----GSVVWEMVEQKEPSRVVAIRCSDSPYKSGNDI-AQLTVRMHTVQKLAIY 282
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D G + G + + V + VFE + WRL ++
Sbjct: 283 DKFGRLILGSEVEPKAVVEYVVFENHIASLDGAWRLHDKV 322
>gi|417398698|gb|JAA46382.1| Putative 39s ribosomal protein l45 mitochondrial [Desmodus
rotundus]
Length = 306
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G + + + + S +I K++ + + + F +A D++ E + + N +
Sbjct: 100 ISKEGLAQKTERLKKNVASQLSIRKIKAYDANFKVKDFPEKAKDIFIEAHLCLNNSNYDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK--VFV 244
L TE + + +++ + +V W +E + + ++ R + LN+ V+
Sbjct: 160 LHTLATENCFPDMVWDLQ-----YKTVRWSFVESLEPPQVVQVRCSSI----LNQGNVYG 210
Query: 245 QLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
Q+T+ +Q YD G + G D K+VL + VFEK L +P WR+ G++
Sbjct: 211 QVTVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKHLTNPYGSWRMHGKV 265
>gi|159184122|ref|NP_353048.2| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|159139459|gb|AAK85833.2| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 217
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+ + ++F A Y+ I A+GD+ +L+ ++++++ + I +RES
Sbjct: 79 KDPSFRPKEFLNGARMAYEMIVMGFADGDRKTLKNLLSKEVFDGFEAAISERES------ 132
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGD 269
+ +++ +G+++ D+ + V Q+TL +++ YD G V GD
Sbjct: 133 --------RGEVVKSTFVGIEKADITQAGVRDSEVQVTLRIVSQLISATYDKDGKLVDGD 184
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + + W+L
Sbjct: 185 PEAVAEVDDIWTFSRDIRSRDPNWKLI 211
>gi|163850987|ref|YP_001639030.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
gi|218529814|ref|YP_002420630.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens CM4]
gi|240138118|ref|YP_002962590.1| hypothetical protein MexAM1_META1p1451 [Methylobacterium extorquens
AM1]
gi|254560680|ref|YP_003067775.1| hypothetical protein METDI2225 [Methylobacterium extorquens DM4]
gi|163662592|gb|ABY29959.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens PA1]
gi|218522117|gb|ACK82702.1| import inner membrane translocase subunit Tim44 [Methylobacterium
extorquens CM4]
gi|240008087|gb|ACS39313.1| conserved hypothetical protein, putative membrane protein
[Methylobacterium extorquens AM1]
gi|254267958|emb|CAX23826.1| conserved hypothetical protein, putative membrane protein
[Methylobacterium extorquens DM4]
Length = 239
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I T A GD+ +LR ++ ++ + I +RE
Sbjct: 105 FEPRAFLEGAKGAYETIVTAFAKGDRKTLRALLSREVCEGFERAISEREK---------- 154
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T I +D+ ++ V V Q+T+ FL+ D+ G + G+
Sbjct: 155 ----RNETAETTFISIDKAEIAAVEVKNRAAQITVRFLSNLITATRDADGKVIDGNAETG 210
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W F ++L W+L
Sbjct: 211 VEVPDVWTFARTLGSRDPNWQLV 233
>gi|395768012|ref|ZP_10448538.1| hypothetical protein MCS_01471 [Bartonella doshiae NCTC 12862]
gi|395413266|gb|EJF79744.1| hypothetical protein MCS_01471 [Bartonella doshiae NCTC 12862]
Length = 230
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L+K +++ ++ + I++RE+ + + +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRNQLKKLLSQDVFESFCAAIEKRENNNERIEFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ ++A + D+++ +T+ +++ Y+ +G + GD V +RD
Sbjct: 156 -GINKIEFIKAAI--QDKDEF------ITVRIISEMISVTYNEQGERIDGDSDAIVEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
IW F ++ W+L
Sbjct: 207 IWTFVRNSLSSDPNWKL 223
>gi|242018556|ref|XP_002429740.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
humanus corporis]
gi|212514752|gb|EEB17002.1| mitochondrial 50S ribosomal protein L45, putative [Pediculus
humanus corporis]
Length = 306
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTE----KMYSALKNEIKQRESMWSS 212
S ++ + F EA D+Y + +T++ D L + VTE +M S +KN+ +
Sbjct: 113 SNFNTKVFPQEAHDIYVKAHTILMKNDPEELSEYVTESAIMEMMSGIKNK---------T 163
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK---FEAYDSKGVTVAGD 269
+ W+ IE + + ++ + V + + +F Q+T+ F KQ YD G G
Sbjct: 164 LRWKFIESLEPPKIVQMSVAPVIQE--SNLFGQVTVRFHTKQASTMLAIYDRFGRLFYGS 221
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+T V + VFEK + + WRL +I
Sbjct: 222 ETIAKDVLEYVVFEKHIVNEYGTWRLHAKI 251
>gi|304392739|ref|ZP_07374679.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
R2A130]
gi|303295369|gb|EFL89729.1| import inner membrane translocase, subunit Tim44 [Ahrensia sp.
R2A130]
Length = 230
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
R G+ ++F Y+ I T A+GDK +L ++ ++Y + I +R VN
Sbjct: 94 RDPGFDPEEFLQGGRMAYEMIVTGFADGDKRTLENLLSREVYESFATVIDERSERGEKVN 153
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGD 269
A +G+D+ + V Q+T+ F+++ DS + GD
Sbjct: 154 --------------ASFVGIDKAVIEGAEVLRDEAQITVRFVSEMISATLDSSDEVIEGD 199
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ V D+W F + + W+L
Sbjct: 200 LQEVAEVTDVWTFARPVKSRDPNWKLV 226
>gi|324518594|gb|ADY47149.1| 39S ribosomal protein L45, partial [Ascaris suum]
Length = 373
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%)
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDI---ILEL 145
P Q R ++++ S + +PY AP E +PF D + +I L L
Sbjct: 109 PYKEVQPRSWNEGQITLQSFYGVVDPYVAPEEPLPFVVPSALTDSVKLKGQEIKERALHL 168
Query: 146 KSAYAIAKLR---KSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199
Y + R K G+ K + F A +Y E + + DK L K +TE + +
Sbjct: 169 WHNYKNGRSRIRKKEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKM 228
Query: 200 KNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAY 259
+++ SV WE++E R + R N + QLT+ QK Y
Sbjct: 229 WPDVEN-----GSVVWEMVEQKEPSRVVAIRCSDSPYKSGNDI-AQLTVRMHTVQKLAIY 282
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D G + G + + V + VFE + WRL ++
Sbjct: 283 DKFGRLILGSEVEPKAVVEYVVFENHIASLDGAWRLHDKV 322
>gi|49474924|ref|YP_032965.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
gi|49237729|emb|CAF26919.1| hypothetical protein BH01040 [Bartonella henselae str. Houston-1]
Length = 230
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ LR+ +++ ++ + I+QRE V +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRNQLRRLLSQDVFESFDAAIEQREKNNERVQF--- 152
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+G+++ + +Q LT+ +++ Y+ +G + GD
Sbjct: 153 -----------TFVGINKIEFVAAAMQEKEEFLTIRIVSEMISATYNEQGERIDGDPDTI 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RDIW F ++ W+L
Sbjct: 202 VEIRDIWTFVRNSLSTDPNWKL 223
>gi|324516912|gb|ADY46671.1| 39S ribosomal protein L45 [Ascaris suum]
gi|324517061|gb|ADY46715.1| 39S ribosomal protein L45 [Ascaris suum]
gi|324517081|gb|ADY46721.1| 39S ribosomal protein L45 [Ascaris suum]
Length = 379
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 16/220 (7%)
Query: 90 PKAPAQARQMGALKVSISSPGFIYEPY-APREAIPFWRRWFTRDGWRRTKDDI---ILEL 145
P Q R ++++ S + +PY AP E +PF D + +I L L
Sbjct: 109 PYKEVQPRSWNEGQITLQSFYGVVDPYVAPEEPLPFVVPSALTDSVKLKGQEIKERALHL 168
Query: 146 KSAYAIAKLR---KSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199
Y + R K G+ K + F A +Y E + + DK L K +TE + +
Sbjct: 169 WHNYKNGRSRIRKKEGFEKFDPKLFGATADSIYVEAHKALMARDKVMLHKYITEHAFVKM 228
Query: 200 KNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAY 259
+++ SV WE++E R + R N + QLT+ QK Y
Sbjct: 229 WPDVEN-----GSVVWEMVEQKEPSRVVAIRCSDSPYKSGNDI-AQLTVRMHTVQKLAIY 282
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
D G + G + + V + VFE + WRL ++
Sbjct: 283 DKFGRLILGSEVEPKAVVEYVVFENHIASLDGAWRLHDKV 322
>gi|326428040|gb|EGD73610.1| hypothetical protein PTSG_05319 [Salpingoeca sp. ATCC 50818]
Length = 1135
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQ----KFYTEAVDLYKEINTLMANGDK 184
F+ +G ++ + + +S ++ +R+ Y K F + D+ E+ T + +
Sbjct: 934 FSLEGLKQRWEHVKKRFRSTLSVGVIRR--YDKSWKPVPFAQQVQDMLVEVQTAFSEASR 991
Query: 185 TS----LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
L+ +T + SA+K + + WE +E + + R + A V+ D N
Sbjct: 992 QHSPLRLQDKLTAQALSAMKKQAQTPHV------WEFVEQVERPRVVNAFTFPVE--DKN 1043
Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
++ Q+T+ KQ++ G +E V D V EK + P A WR+C +I
Sbjct: 1044 NLYGQVTVRLHMKQRYAPL--------GHPLEERDVVDYVVLEKRVVSPSAPWRICSKI 1094
>gi|144900161|emb|CAM77025.1| Mitochondrial import inner membrane translocase, subunit Tim44
[Magnetospirillum gryphiswaldense MSR-1]
Length = 243
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 9/152 (5%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L A + R +S F + A ++ I A GDK +LR + +++Y + I
Sbjct: 81 LARGEAAIRARDPSFSNTGFLSGARMAFEMIVGAFAAGDKKALRPLLADQVYKPFCDAID 140
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
R ++ E++ I + A ++G Q+T+ F+++Q D G
Sbjct: 141 ARARAGEELSTEIMG-IKSAEIIEAIMVGT--------VAQVTVRFVSEQINVIKDLDGR 191
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V GD ++ V V D W F + W L
Sbjct: 192 IVEGDPSRIVPVTDEWTFSRDTRSKDPNWHLS 223
>gi|418064451|ref|ZP_12701929.1| import inner membrane translocase subunit Tim44, partial
[Methylobacterium extorquens DSM 13060]
gi|373546438|gb|EHP73202.1| import inner membrane translocase subunit Tim44, partial
[Methylobacterium extorquens DSM 13060]
Length = 168
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I T A GD+ +LR ++ ++ + I +RE
Sbjct: 34 FEPRAFLEGAKGAYETIVTAFAKGDRKTLRALLSREVCEGFERAISEREK---------- 83
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T I +D+ ++ V V Q+T+ FL+ D+ G + G+
Sbjct: 84 ----RNETAETTFISIDKAEIAAVEVKNRAAQITVRFLSNLITATRDADGKVIDGNAETG 139
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W F ++L W+L
Sbjct: 140 VEVPDVWTFARTLGSRDPNWQLV 162
>gi|163757477|ref|ZP_02164566.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
gi|162284979|gb|EDQ35261.1| hypothetical protein HPDFL43_18742 [Hoeflea phototrophica DFL-43]
Length = 234
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I + A+GD+ +L+ ++ +++ + I +RE+ +V +
Sbjct: 100 FNPKEFVGGATMAYEMIVSAYADGDRKTLKSLLSREVFDGFVSAIDEREARGETVRSNFV 159
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K ++A + G + N +TL +++ D G V GD + V D
Sbjct: 160 -GIEKANIIQAEMKGTEAN--------VTLRIISQLISATLDKDGEVVEGDLVEVTDVND 210
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F + WRL
Sbjct: 211 VWTFTRDTRSRDPNWRLI 228
>gi|423713237|ref|ZP_17687497.1| hypothetical protein ME1_00243 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423278|gb|EJF89473.1| hypothetical protein ME1_00243 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 230
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L+K +++ ++ I+QRE V + +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRDQLKKLLSQDVFEGFCAAIEQREKKNERVQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A++ ++ LT+ +++ Y+ KG + GD V +RD
Sbjct: 156 -GINKIEFVAAKMQEKEQF--------LTVRIVSEMISVTYNEKGERIDGDPDAIVEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
+W F ++ W+L
Sbjct: 207 VWTFMRNSLSSDPNWKL 223
>gi|222474811|ref|YP_002563226.1| hypothetical protein AMF_080 [Anaplasma marginale str. Florida]
gi|255002781|ref|ZP_05277745.1| hypothetical protein AmarPR_00408 [Anaplasma marginale str. Puerto
Rico]
gi|222418947|gb|ACM48970.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
Length = 219
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 142 ILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201
+ ++ S + K R G+S + F + ++ I ++ G+ L +++ M+ +
Sbjct: 70 VEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSLLSKDMHDSFVR 129
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
EI++R+S + + +++ I+ + A L G +T++F+ +Q D+
Sbjct: 130 EIERRKSAGHT-HEDVVVSIVSQKVTSAELKGNS--------AAITVQFVTEQINVVRDA 180
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G V G +K + D W F + + G W L
Sbjct: 181 GGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLT 215
>gi|255003915|ref|ZP_05278716.1| hypothetical protein AmarV_00428 [Anaplasma marginale str.
Virginia]
Length = 217
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 9/155 (5%)
Query: 142 ILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201
+ ++ S + K R G+S + F + ++ I ++ G+ L +++ M+ +
Sbjct: 68 VEQISSVFEAIKERNKGFSVKHFIEGSAAAFEAIVKALSQGNAEFLSSLLSKDMHDSFVR 127
Query: 202 EIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 261
EI++R+S + + +++ I+ + A L G +T++F+ +Q D+
Sbjct: 128 EIERRKSAGHT-HEDVVVSIVSQKVTSAELKGNS--------AAITVQFVTEQINVVRDA 178
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G V G +K + D W F + + G W L
Sbjct: 179 GGQVVDGSTSKVNTIEDTWKFARDITTSGRRWYLT 213
>gi|453330881|dbj|GAC87208.1| translocase transmembrane protein [Gluconobacter thailandicus NBRC
3255]
Length = 251
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
G++ Q F +A +++++ A GD+ +L +T + A I R +
Sbjct: 111 DGGFTPQGFLKDAETIFRQVVPAFAAGDRAALSGLMTPETEEAFLAAIDARTEAGETQRS 170
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEV 274
+L I M L A L+ D N ++ + +++Q D +G V G D E
Sbjct: 171 DL-RGIESMAILDAMLVSGDGNTQTG---RIEVRIVSRQVNMLTDRQGEPVQGTDAVTEF 226
Query: 275 LVRDIWVFEKSLFHPGAYWRLC 296
D+W+FE+ G WRL
Sbjct: 227 --HDLWLFERQFGVSGTQWRLA 246
>gi|170591877|ref|XP_001900696.1| Tim44-like domain containing protein [Brugia malayi]
gi|158591848|gb|EDP30451.1| Tim44-like domain containing protein [Brugia malayi]
Length = 389
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 10/155 (6%)
Query: 149 YAIAKLRK----SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
+ I ++RK +S + F A ++Y E + + DK +L+K +TE + + +++
Sbjct: 196 HGIKRIRKRKGFENFSIKTFPATADEIYVEAHKALMTRDKIALQKYITETAFGKMWPDVE 255
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
SV WEL++ I R + R N + Q+ + QK YD G
Sbjct: 256 N-----GSVVWELMKHIELSRVVSVRCADFPHQSGNDI-AQIIVRMHTMQKIALYDRFGR 309
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ G + + V + VFE + WRL ++
Sbjct: 310 LILGTEHEAKPVLEYVVFENHIASFDGVWRLHDKV 344
>gi|414341124|ref|YP_006982645.1| translocase transmembrane protein [Gluconobacter oxydans H24]
gi|411026459|gb|AFV99713.1| translocase transmembrane protein [Gluconobacter oxydans H24]
Length = 251
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
G++ Q F +A +++++ A GD+ +L +T + A I R +
Sbjct: 111 DGGFTPQGFLKDAETIFRQVVPAFAAGDRAALSGLMTPETEEAFLAAIDARTEAGETQRS 170
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEV 274
+L I M L A L+ D N ++ + +++Q D +G V G D E
Sbjct: 171 DL-RGIESMAILDAMLVSGDGNTQTG---RIEVRIVSRQVNMLTDRQGEPVQGTDAVTEF 226
Query: 275 LVRDIWVFEKSLFHPGAYWRLC 296
D+W+FE+ G WRL
Sbjct: 227 --HDLWLFERQFGVSGTQWRLA 246
>gi|88608273|ref|YP_506249.1| Tim44-like domain-containing protein [Neorickettsia sennetsu str.
Miyayama]
gi|88600442|gb|ABD45910.1| Tim44-like domain protein [Neorickettsia sennetsu str. Miyayama]
Length = 208
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
I L K +S +F A ++ + D L K +++K +S + +I+QR+
Sbjct: 69 IESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKLLSKKAFSVVSEKIEQRKIRG 128
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK 270
+++ L+ LR++ + + D+ K + T+ F+++Q D G ++GD
Sbjct: 129 NTLERTLV-------ALRSK--NLIKLDVIKGVLYATVRFVSEQINVVRDDAGRVLSGDH 179
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLC 296
++ D W+FE+SL P W +C
Sbjct: 180 DTIEVIEDKWIFERSLKSPHNSWVVC 205
>gi|393765532|ref|ZP_10354094.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. GXF4]
gi|392729114|gb|EIZ86417.1| import inner membrane translocase subunit Tim44 [Methylobacterium
sp. GXF4]
Length = 238
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 19/146 (13%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ G+ + F A Y+ I A GD+ +LR +++++ A + I +RE
Sbjct: 101 EPGFDPRAFIEGAKAAYETIMIAFAKGDRKTLRGLLSKEVGEAFERAITERER------- 153
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDK 270
+TL + +D+ ++ + V Q+T+ FL+ +++G + G
Sbjct: 154 -------NRQTLETTFVSIDKAEIVAIEVRNRVAQITVRFLSNLITATRNAEGKVIDGSA 206
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W F ++L W+L
Sbjct: 207 ETVVEVPDVWTFARTLGSRDPNWQLV 232
>gi|407722353|ref|YP_006842015.1| translocase transmembrane protein [Sinorhizobium meliloti Rm41]
gi|418402593|ref|ZP_12976102.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti CCNWSX0020]
gi|359503421|gb|EHK75974.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
meliloti CCNWSX0020]
gi|407320585|emb|CCM69189.1| translocase transmembrane protein [Sinorhizobium meliloti Rm41]
Length = 233
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 84/206 (40%), Gaps = 37/206 (17%)
Query: 113 YEPYAPRE------------AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR----- 155
++PY+PR+ + RR D R + + + + A+LR
Sbjct: 37 FDPYSPRDIAQGPEAKDNGKVVQLPRRETAEDESRYAAIETVAKAGTPLN-AQLRAMTDA 95
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
++ +F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+
Sbjct: 96 DPNFNPAEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIGEREA------- 148
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDK 270
K +++ +G+D+ D+ ++ +T+ +++ YD +G V GD
Sbjct: 149 -------KGEVVKSTFVGIDKADIVHAEIKDAEENITVRIISQLISATYDKQGKLVDGDA 201
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 202 DSVAEVNDLWTFARDIRSRDPNWKLI 227
>gi|395788230|ref|ZP_10467805.1| hypothetical protein ME7_01140 [Bartonella birtlesii LL-WM9]
gi|395409563|gb|EJF76151.1| hypothetical protein ME7_01140 [Bartonella birtlesii LL-WM9]
Length = 230
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 150 AIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
A+ K+ S +S Q F A Y+ I T A GD+ L+K +++ ++ + I++RE+
Sbjct: 88 ALCKI-DSHFSPQFFIKGARAAYEIIVTAFARGDRDKLKKLLSQDVFESFCAAIEERENN 146
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
+ + + I K+ + A + D+++ +T+ +++ Y+ +G + GD
Sbjct: 147 NERIQFTFV-GINKIEFVSAAV--QDKDEF------ITVRIISEMISVTYNEQGERIDGD 197
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRL 295
V VRD+W F ++ W+L
Sbjct: 198 PDVIVEVRDVWTFVRNSLSSDPNWKL 223
>gi|395792576|ref|ZP_10472000.1| hypothetical protein MEI_00621 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432133|gb|EJF98122.1| hypothetical protein MEI_00621 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 230
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L+K + + ++ I+QRE V + +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRDQLKKLLAQDVFEGFCAAIEQREKKNERVQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A++ ++ LT+ +++ Y+ KG + GD V +RD
Sbjct: 156 -GINKIEFVAAKMQEKEQF--------LTVRIVSEMISVTYNEKGERIDGDPDAIVEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
+W F ++ W+L
Sbjct: 207 VWTFVRNSLSSDPNWKL 223
>gi|209883544|ref|YP_002287401.1| import inner membrane translocase subunit Tim44 [Oligotropha
carboxidovorans OM5]
gi|337739386|ref|YP_004631114.1| hypothetical protein OCA5_c01410 [Oligotropha carboxidovorans OM5]
gi|386028405|ref|YP_005949180.1| hypothetical protein OCA4_c01410 [Oligotropha carboxidovorans OM4]
gi|209871740|gb|ACI91536.1| import inner membrane translocase, subunit Tim44 [Oligotropha
carboxidovorans OM5]
gi|336093473|gb|AEI01299.1| hypothetical protein OCA4_c01410 [Oligotropha carboxidovorans OM4]
gi|336097050|gb|AEI04873.1| hypothetical protein OCA5_c01410 [Oligotropha carboxidovorans OM5]
Length = 234
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ Q F + A Y+ I A+GD+ L+ ++ ++Y + IK RE V
Sbjct: 100 FNAQHFVSGAKSAYEMIVQAFASGDRRMLKDLLSAEVYDGFEAVIKGREQRGEKVE---- 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
R +D+ L V LT+ F+++ D G + G+ K
Sbjct: 156 ----------TRFASIDKAALVSAGVRDRIAHLTVRFVSQMITVTRDKDGAVIDGNPEKL 205
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + + W+L G
Sbjct: 206 TDVTDVWTFSRDVSSRDPNWKLVG 229
>gi|403280014|ref|XP_003931534.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 253
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 178 LMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRN 237
++ D L VTE + + +IK + WS V E +EP ++ + ++ N
Sbjct: 98 FFSSSDHDRLHTLVTEHCFPDMTWDIKYKTVRWSFV--ESLEPSHVVQVRCSSMV----N 151
Query: 238 DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRL 295
+ N V+ Q+T+ +Q YD G + G D K+VL + VFEK L +P WR+
Sbjct: 152 ESN-VYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKQLLNPYGSWRM 208
Query: 296 CGRI 299
G+I
Sbjct: 209 HGKI 212
>gi|395764966|ref|ZP_10445586.1| hypothetical protein MCO_00462 [Bartonella sp. DB5-6]
gi|395413783|gb|EJF80245.1| hypothetical protein MCO_00462 [Bartonella sp. DB5-6]
Length = 230
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L++ +++ ++ + I++RE+ + + +
Sbjct: 96 FSPQFFIKGAQIAYEMIVTAFAKGDRDQLKRLLSQDIFESFCAAIEKRENNNERIQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A + D+++ LT+ +++ Y+ +G + GD V +RD
Sbjct: 156 -GINKIEFVSAAI--QDKDEF------LTVRIISEMISVTYNEQGECIDGDPDAIVEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
+W F ++ W+L
Sbjct: 207 VWTFVRNSLSSDPNWKL 223
>gi|341616259|ref|ZP_08703128.1| hypothetical protein CJLT1_14952 [Citromicrobium sp. JLT1363]
Length = 211
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+ F A Y I GDK +LR+ + +Y + I RE +++ +L
Sbjct: 77 GFDIVSFLEGAKGAYGMILEAYWQGDKETLRELCDDSVYEGFASAIDAREEAGETLDNKL 136
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
I I+ T+R +L + ++T+ F+A DS+G VAG + R
Sbjct: 137 IR--IEDATIR-------DAELERKEARITVRFVADIAAVTRDSEGTVVAGSLDDAIESR 187
Query: 278 DIWVFEKSLFHPGAYWRLC 296
DIW F + + W+L
Sbjct: 188 DIWTFARRVDSRTPDWQLV 206
>gi|281207677|gb|EFA81857.1| hypothetical protein PPL_05089 [Polysphondylium pallidum PN500]
Length = 268
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 13/201 (6%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRR---WFTRDGWRRTKDDIILELKSAYAIAKLRKSGYS 160
+ + SPG ++E P + WF + + +KS + KL ++
Sbjct: 66 IFVQSPGQVFENAMPSPIVSTLLSPSLWFDQAKYYYKTFGSYSMIKSK--LKKLTDEKFT 123
Query: 161 KQKFYTEAVDLYKEINTLMANG--DKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++F E+ + Y ++N M +G DK + + K++ K +S WS+ EL
Sbjct: 124 VKQFLEESKEKYTKLNQTMLSGNIDKDITTIYFHSVLSTQFKSQPKYIKSSWSA---ELN 180
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
+P K R+ I + + F Q+ +EF Q D++ T + V +D
Sbjct: 181 KP--KAIWSRSGQIKTSLSGDTEFFAQICVEFSGTQSMSLVDTRNGTTLSEAV-NVPFKD 237
Query: 279 IWVFEKSLFHPGAYWRLCGRI 299
I+VFE+ L + W++C ++
Sbjct: 238 IYVFERCLSSLPSEWKICAQV 258
>gi|297607713|ref|NP_001060468.2| Os07g0647300 [Oryza sativa Japonica Group]
gi|255678018|dbj|BAF22382.2| Os07g0647300 [Oryza sativa Japonica Group]
Length = 172
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 227 LRARLIGVDRNDLNKVFVQLTLEFLAKQ 254
L AR IG+D+NDL+K F+QLTLEF+ KQ
Sbjct: 114 LGARKIGLDKNDLDKAFIQLTLEFVTKQ 141
>gi|254796736|ref|YP_003081572.1| hypothetical protein NRI_0348 [Neorickettsia risticii str.
Illinois]
gi|254589983|gb|ACT69345.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 208
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
I L K +S +F A ++ + D L K +++K +S + ++ QR+
Sbjct: 69 IESLWKQDFSTDRFMEGAERAFEMFTKAFTDCDLKVLSKLLSKKAFSVVSEKVAQRKIRG 128
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK 270
+++ L+ LR++ + + D+ K + T+ F+++Q D G ++GD
Sbjct: 129 NTLERTLV-------ALRSK--NLIKLDVIKGVLYATVRFVSEQINVVRDDAGRILSGDH 179
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLC 296
++ D WVFE+SL P W +C
Sbjct: 180 DTIEVIEDKWVFERSLRSPNNSWVVC 205
>gi|56753329|gb|AAW24868.1| SJCHGC06217 protein [Schistosoma japonicum]
Length = 326
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 30/209 (14%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDG---------WRRTKDDIILELKSAYAIAKL 154
++I G I++PY P + DG KD+++ + K+ + +
Sbjct: 82 INIGHTGQIFDPYVPPDG----------DGQTSLLSPKRLTHLKDELVDKGKNYKDLLLI 131
Query: 155 R--KSGYSKQKFYTEAVDLYKEINTLMAN--GDKTSLRKAVTEKMYSALKNEIKQRESMW 210
R + + + F +EA ++Y E + L+ N +++ L + VTEK + +++ R W
Sbjct: 132 RSHEPSFKSKPFASEAENIYIEAHNLLQNYRQNESRLFELVTEKALVDMTADLRLRTLRW 191
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK 270
V IEP K+ +R + N + Q+T+ F +Q Y+ G + G+
Sbjct: 192 KFVG--NIEPP-KVVHIRCKEYLSKGNH----YAQVTVRFYTQQILSIYNRFGRLLYGNP 244
Query: 271 TKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
V V + VFEK + WRL ++
Sbjct: 245 DTAVDVLEYVVFEKHISDEYGTWRLHCKV 273
>gi|182680015|ref|YP_001834161.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182635898|gb|ACB96672.1| import inner membrane translocase subunit Tim44 [Beijerinckia
indica subsp. indica ATCC 9039]
Length = 260
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 10/147 (6%)
Query: 150 AIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
AIAK + ++ F A Y+ I A G +++L + +Y+ + I +RES
Sbjct: 108 AIAKADPA-FAPGPFLEGARHAYEMIVNAFAEGQRSALANLLVRDVYAGFEAAITERESQ 166
Query: 210 WSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGD 269
V + +L A I + L ++TL + AK D++G V G
Sbjct: 167 GHKVELTFV-------SLDAAKI--EEAALFHQIAEITLRYKAKMIKVTRDAQGAVVEGS 217
Query: 270 KTKEVLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W FE+ + W+L
Sbjct: 218 PDHVVDVDDLWTFERMIGSQDPNWKLA 244
>gi|440224896|ref|YP_007331987.1| import inner membrane translocase subunit Tim44 [Rhizobium tropici
CIAT 899]
gi|440036407|gb|AGB69441.1| import inner membrane translocase subunit Tim44 [Rhizobium tropici
CIAT 899]
Length = 233
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I A GD+ SL+ ++ ++Y I +RE+ V +
Sbjct: 99 FNPKEFVNGARMAYEMIVMAFAEGDRKSLKGLLSREVYEGFDAAIAEREARGEKVKSTFV 158
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K + A + G D V +T+ +++ YD G + GD V D
Sbjct: 159 G-IDKADIVTAEVKGTD--------VLITMRIVSQMISATYDKAGTLIDGDAEAVAEVSD 209
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F + W+L
Sbjct: 210 LWTFARDTRSRDPNWKLV 227
>gi|126738514|ref|ZP_01754219.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
gi|126720313|gb|EBA17019.1| transporter, Tim44 family protein [Roseobacter sp. SK209-2-6]
Length = 241
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 135 RRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVT 192
R D + E +A A A ++++ +S +F A Y+ I NG+ +L+ +
Sbjct: 81 RDITDHVEEESPAAQAFASMKRAEPSFSVSEFVQGARGAYEMILMGFENGELDALKGFLA 140
Query: 193 EKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLA 252
E +Y + + RE ++ E I ++G +D N ++T+ F+
Sbjct: 141 EDVYDSFVEAVADREDKGLTIEAEFI------GVRETAVVGAHFDDANNT-AEVTMRFVG 193
Query: 253 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ D G V GD +D WVF +S+ W+L
Sbjct: 194 ELTSVVRDRDGEIVEGDAKAVKRQKDTWVFARSMGTDDPNWQLV 237
>gi|410943933|ref|ZP_11375674.1| translocase transmembrane protein [Gluconobacter frateurii NBRC
101659]
Length = 252
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ Q F +A +++++ A GD+ +L +T + A I R + +L
Sbjct: 115 FTPQGFLKDAETIFRQVVPAFAAGDRAALSGLMTSQTEEAFLAAINARAEAGQTQRSDL- 173
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVR 277
I M L A L+ D N ++ + +++Q D +G V G D E
Sbjct: 174 RGIDSMAILDAMLV---SGDANTQTGRIEVRIVSRQVNMLTDRQGEPVQGTDAVTEF--H 228
Query: 278 DIWVFEKSLFHPGAYWRLC 296
D+W+FE+ G WRL
Sbjct: 229 DLWLFEREFGASGTQWRLA 247
>gi|402489606|ref|ZP_10836400.1| import inner membrane translocase subunit Tim44 [Rhizobium sp. CCGE
510]
gi|401811398|gb|EJT03766.1| import inner membrane translocase subunit Tim44 [Rhizobium sp. CCGE
510]
Length = 234
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 98 AFSPKEFLNGARMAYEMIVMAFADGDRKTLKNLLSREVYEGFDAAIGEREARGEKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ +L Q+T+ +++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAELTHAETKGSEAQITVRIISQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDLWTFARDTRSRDPNWKLVA 228
>gi|418053669|ref|ZP_12691725.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans 1NES1]
gi|353211294|gb|EHB76694.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans 1NES1]
Length = 251
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 67/156 (42%), Gaps = 24/156 (15%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
+AKL + + + F T A Y+ I + A G++ L+ +++ +Y I RES
Sbjct: 106 VAKL-DTAFDPETFLTGAGRAYEMIVSAFAEGNRRMLKDLLSKDVYDGFSAAIADRES-- 162
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVT 265
+ TL + +G+ ++++ V+ LT+ F+++ D G
Sbjct: 163 ------------RGETLDQQFVGIKKSEIIDAEVKNGVAALTVRFISELISATRDKAGEI 210
Query: 266 VAGDKTKEVLVRDIWVFEKSL----FHPGAYWRLCG 297
V+GD K V DIW+F + + WRL
Sbjct: 211 VSGDAQKIKDVTDIWIFSRDVSSAKTRSNPNWRLVA 246
>gi|296444992|ref|ZP_06886953.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
gi|296257413|gb|EFH04479.1| import inner membrane translocase subunit Tim44 [Methylosinus
trichosporium OB3b]
Length = 229
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+ + F A Y+ + A GD+ LR + +Y + I RE S
Sbjct: 94 GFDAKNFLEGAKKAYELVVESFAKGDREMLRNLLANDVYDSFAKAIAAREQRGESA---- 149
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
+ R + V+ + + Q+ + F+ K DS G + GD + + +
Sbjct: 150 -----EARVVAIETASVEDAQVERGRAQVAIRFVVKLISARRDSAGEVIEGDVERPIDIT 204
Query: 278 DIWVFEKSLFHPGAYWRLC 296
D+W F + + W+L
Sbjct: 205 DLWTFARDISSRDPNWKLV 223
>gi|395789137|ref|ZP_10468667.1| hypothetical protein ME9_00384 [Bartonella taylorii 8TBB]
gi|395431271|gb|EJF97298.1| hypothetical protein ME9_00384 [Bartonella taylorii 8TBB]
Length = 230
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S +S Q F A Y+ I T A GD+ L++ +++ ++ + I++RE+ V +
Sbjct: 94 SHFSPQFFIKGAQVAYEMIVTAFAKGDRDQLKRLLSQDVFESFCAAIEKRENNNERVEFT 153
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K+ + A + D+++ +T+ +++ Y+ +G + GD V +
Sbjct: 154 FV-GINKIEFISAAI--QDKDEF------ITVRIISEMISVTYNEQGERIDGDPDAIVEI 204
Query: 277 RDIWVFEKSLFHPGAYWRL 295
RD+W F ++ W+L
Sbjct: 205 RDVWTFVRNSLSSDPNWKL 223
>gi|150398408|ref|YP_001328875.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
gi|150029923|gb|ABR62040.1| import inner membrane translocase subunit Tim44 [Sinorhizobium
medicae WSM419]
Length = 234
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ +F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+
Sbjct: 100 FNPVEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIAEREN---------- 149
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +T+ +++ YD +G V GD
Sbjct: 150 ----KGEVVKSTFVGIDKADIVHAEIKDSEENITVRIISQLISATYDKQGKLVDGDAESV 205
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 206 AEVNDLWTFSRDIRSRDPNWKLI 228
>gi|240849776|ref|YP_002971164.1| putative translocase transmembrane protein [Bartonella grahamii
as4aup]
gi|240266899|gb|ACS50487.1| putative translocase transmembrane protein [Bartonella grahamii
as4aup]
Length = 230
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L+ + + ++ + I+QRE N E I
Sbjct: 96 FSPQFFIKGAQIAYEMIVTAFAKGDRNQLKSLLCQDVFESFCTAIEQREK-----NKERI 150
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
E +G+++ + +Q LT+ +++ Y+ +G + GD
Sbjct: 151 E---------FTFVGINKIEFVAAAIQEKDELLTIRIVSEMISVTYNEQGERIDGDPDAI 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RDIW F ++ W+L
Sbjct: 202 VEIRDIWTFVRNSLSSDPNWKL 223
>gi|395791576|ref|ZP_10471032.1| hypothetical protein MEC_01023 [Bartonella alsatica IBS 382]
gi|395407879|gb|EJF74499.1| hypothetical protein MEC_01023 [Bartonella alsatica IBS 382]
Length = 230
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S +S Q F A Y+ I T A GD+ L++ +++ ++ + I++RE+ V +
Sbjct: 94 SHFSPQFFIKGAQVAYEIIVTAFAKGDREQLKRLLSQDVFESFCAAIEKRENNNERVQFT 153
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K+ + A + D +T+ +++ Y+ +G + GD V +
Sbjct: 154 FV-GINKIEFVSAAIQDTDEF--------ITVRIISEMISVTYNEQGKCIDGDPDAIVEI 204
Query: 277 RDIWVFEKSLFHPGAYWRL 295
RD+W F ++ W+L
Sbjct: 205 RDVWTFVRNSLSLDPNWKL 223
>gi|262277816|ref|ZP_06055609.1| import inner membrane translocase subunit Tim44 [alpha
proteobacterium HIMB114]
gi|262224919|gb|EEY75378.1| import inner membrane translocase subunit Tim44 [alpha
proteobacterium HIMB114]
Length = 204
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++ F A Y+ I A GD+ +L+ +T+ +Y + IK+RES S I
Sbjct: 66 FDEKIFIKGAEAAYEIIINAFAKGDRKALKPLLTKDLYKNFEGVIKERESKKISSQMSFI 125
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
IK +++ +D D F ++ +F+++ KG + G+ + LV D
Sbjct: 126 G--IK----ETKILDIDNKD---TFYKVKTKFVSEIVNCLKSDKGEVIEGNPEEIKLVTD 176
Query: 279 IWVFEKSLFHPGAYWRLC 296
+WVFEK L + W L
Sbjct: 177 VWVFEKDLKNNDPTWYLT 194
>gi|408376141|ref|ZP_11173746.1| hypothetical protein QWE_01080 [Agrobacterium albertimagni AOL15]
gi|407749608|gb|EKF61119.1| hypothetical protein QWE_01080 [Agrobacterium albertimagni AOL15]
Length = 232
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 64/143 (44%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S ++F A Y+ I A+GD+ +L+ ++ +++ ++ I RES
Sbjct: 98 FSPKEFLNGAKIAYEMIVMAYADGDRKTLKGLLSREVFDGFESAIADRES---------- 147
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ +++ +G+++ D+ + Q+T+ +++ YD+ G + GD
Sbjct: 148 ----RGEVVKSTFVGIEKADIIQASARENEEQVTVRIVSQLITATYDNAGAMIDGDAEAV 203
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 204 SEVNDVWTFARDVRSRDPNWKLI 226
>gi|209966267|ref|YP_002299182.1| hypothetical protein RC1_3002 [Rhodospirillum centenum SW]
gi|209959733|gb|ACJ00370.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 230
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++++ F A ++ I A+GD +LR + + +Y I++R++
Sbjct: 97 FNEKHFLQGAKAAFEMIVKAFADGDTPTLRPLLADDVYDGFAEAIRKRQAAGE------- 149
Query: 219 EPIIKMRTLRARLIGVDRNDLNKV-----FVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
T R+ + DL + +T+ F+ Q ++ G V GD +
Sbjct: 150 -------TRETRITAFESVDLKEARMDGRHAMVTIRFITHQVDCTVNAAGDVVDGDPDEA 202
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
+ V DIW F ++ P W L
Sbjct: 203 IEVVDIWTFSRNTRSPDPNWLLV 225
>gi|424897621|ref|ZP_18321195.1| hypothetical protein Rleg4DRAFT_3577 [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181848|gb|EJC81887.1| hypothetical protein Rleg4DRAFT_3577 [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 234
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+S ++F A Y+ I A+GD+ SL+ ++ ++Y I +RE+ V
Sbjct: 98 AFSPKEFLNGARLAYEMIVMAYADGDRKSLKNLLSREVYDGFDAAIGERETRGEKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ ++ Q+T+ +++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDLWTFARDTRSRDPNWKLVA 228
>gi|378828090|ref|YP_005190822.1| putative import inner membrane translocase,subunit Tim44
[Sinorhizobium fredii HH103]
gi|365181142|emb|CCE97997.1| putative import inner membrane translocase,subunit Tim44
[Sinorhizobium fredii HH103]
Length = 233
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 113 YEPYAPREA-----------IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR-----K 156
++PY+PREA + RR T + R L A+LR
Sbjct: 37 FDPYSPREAQGPEARDNGKVVQLPRRETTAEDESRYAAIDGLSKPGTPLNAQLRALSDAD 96
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ +F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+ V
Sbjct: 97 PSFQPAEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIAEREARGEVVKST 156
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K + A L + N +T+ +++ YD +G + GD V
Sbjct: 157 FV-GIEKADIVHAELKDAEEN--------VTVRIISQLISATYDKQGKLIDGDADSVAEV 207
Query: 277 RDIWVFEKSLFHPGAYWRLC 296
D+W F + + W+L
Sbjct: 208 NDLWTFARDIRSRDPNWKLI 227
>gi|405969210|gb|EKC34193.1| 39S ribosomal protein L45, mitochondrial [Crassostrea gigas]
Length = 379
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 159 YSKQKFYTEAVDLY----KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
+++++F +A +Y K I L N ++ L VT+ +Y + + M +++
Sbjct: 172 FNQKEFLAQAHHIYIQAHKCIERLRENDEE--LMDYVTQHVYGQMTKGM-----MDKTLH 224
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
WE +E + + + + A V D F QLT+ F QK Y+ G GD K
Sbjct: 225 WEFVESVEQPKIVTAAGGAVVSKD--NAFGQLTVRFHTLQKLAIYNRFGRLTYGDSEKPR 282
Query: 275 LVRDIWVFEKSLFHPGAYWRLCGRI 299
+ + VFEK + WR+ G++
Sbjct: 283 YMLEYVVFEKHISDTEGKWRIAGKV 307
>gi|427427606|ref|ZP_18917650.1| Transporter [Caenispirillum salinarum AK4]
gi|425883532|gb|EKV32208.1| Transporter [Caenispirillum salinarum AK4]
Length = 235
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
R + F A ++ I A GDK +L+ + +++Y I QR + ++
Sbjct: 97 RDPSFEPNGFLRGARAAFEMIVEAYAKGDKETLQPLLADEVYQGFAGAIDQRAAAGETME 156
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
++ I K+ A + G D +T+ F ++Q D+ G + GD+
Sbjct: 157 TRIL-GITKLEIREAAMRGDD--------AMVTVLFQSEQLNMVLDADGNVIEGDEKHPT 207
Query: 275 LVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 208 DVTDVWTFARDVTSRDPNWKLV 229
>gi|398355671|ref|YP_006401135.1| import inner membrane translocase, subunit Tim44 [Sinorhizobium
fredii USDA 257]
gi|390130997|gb|AFL54378.1| putative import inner membrane translocase, subunit Tim44
[Sinorhizobium fredii USDA 257]
Length = 218
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 43/209 (20%)
Query: 113 YEPYAPREA-----------IPFWRRWFTR---------DGWRRTKDDIILELKSAYAIA 152
++PY+PREA + RR T DG+ + + +L+ A++
Sbjct: 22 FDPYSPREAQGPEARDNGKVVQLPRRESTAEDESRYAAIDGFSKPGTPLNAQLR---ALS 78
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
S + +F A Y+ I A+GD+ +L+ ++ ++Y + I +RES
Sbjct: 79 DADPS-FQPAEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFEAAIAERES---- 133
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVA 267
K +++ +G+++ DL ++ +T+ +++ YD +G +
Sbjct: 134 ----------KGEVVKSTFVGIEKADLVHAELKDSEENVTVRIISQLISATYDKQGKLID 183
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
GD V D+W F + W+L
Sbjct: 184 GDADSVAEVNDLWTFARDARSRDPNWKLI 212
>gi|163797060|ref|ZP_02191015.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
gi|159177576|gb|EDP62129.1| hypothetical protein BAL199_11141 [alpha proteobacterium BAL199]
Length = 222
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 9/144 (6%)
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
KL G+ +++F A + I A GD LR ++ ++Y + I+ E
Sbjct: 81 KLADDGFDERQFLQGAKSAFAMIVEAFAKGDVDGLRPLLSRELYGGFASAIEACEKAG-- 138
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
E+ E I + R V L ++T+EF+ +Q S G + GD +
Sbjct: 139 ---EIQETTI----VTIRSADVVEASLENSVAKVTVEFVTEQVKVTRSSDGEVIDGDPDR 191
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLC 296
++ DIW F + + + W L
Sbjct: 192 IDILTDIWTFARDIGNRDPNWELV 215
>gi|409439634|ref|ZP_11266683.1| Import inner membrane translocase subunit Tim44 [Rhizobium
mesoamericanum STM3625]
gi|408749010|emb|CCM77864.1| Import inner membrane translocase subunit Tim44 [Rhizobium
mesoamericanum STM3625]
Length = 233
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ ++ ++F A Y+ I A+GD+ +L+ ++ ++Y I RES V
Sbjct: 97 ASFNPKEFVNGARMAYEMIVMAFADGDRKALKNLLSREVYDGFDAAIADRESKGEKVKST 156
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K A + G + VQ+TL +++ YD + GD V
Sbjct: 157 FV-GIDKAEITNAEIKGTE--------VQITLRIVSQLISATYDKADKLIEGDAENVAEV 207
Query: 277 RDIWVFEKSLFHPGAYWRLCG 297
D+W F + W+L
Sbjct: 208 NDLWTFARDTRSRDPNWKLVA 228
>gi|114706069|ref|ZP_01438972.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
gi|114538915|gb|EAU42036.1| Calcium-binding EF-hand [Fulvimarina pelagi HTCC2506]
Length = 229
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 23/146 (15%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ + A GD+ +LR ++ +Y + I RE
Sbjct: 95 FDPKEFLEGAKIAYEMVVDAFAQGDRNTLRNLLSPDVYEGFEAAIATREESGE------- 147
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQL-------TLEFLAKQKFEAYDSKGVTVAGDKT 271
T+R+ IG+D D V +L T+ +++ +S G + GD
Sbjct: 148 -------TMRSSFIGID--DAKIVSAELRGREALVTIRIVSEMISATLNSNGDVLDGDME 198
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
V VRDIW F + W+L G
Sbjct: 199 TVVEVRDIWTFGRDTKSRDPNWKLVG 224
>gi|222084209|ref|YP_002542735.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
gi|221721657|gb|ACM24813.1| translocase transmembrane protein [Agrobacterium radiobacter K84]
Length = 233
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I RE+
Sbjct: 99 FSPKEFVNGARMAYEMIVMAFADGDRNALKGLLSREVYEGFDAAITDRET---------- 148
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D + +T+ +++ YD G + GD
Sbjct: 149 ----KGEKVKSTFVGIDKADIVSAEMKDTEATVTMRIVSQMISATYDKAGTLIDGDAETV 204
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
+ D+W F + W+L
Sbjct: 205 AEISDVWTFARDSRSRDPNWKLV 227
>gi|296283090|ref|ZP_06861088.1| hypothetical protein CbatJ_05690 [Citromicrobium bathyomarinum
JL354]
Length = 220
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 9/139 (6%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+ F A Y I GDK +LR E +Y I RE +++ L
Sbjct: 86 GFDITSFLEGAKGAYGMILEAYWKGDKETLRDLCDESVYQGFAQAIDAREEAGETLDNRL 145
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
I I+ T+R +L + ++T+ F+A +D G VAG + R
Sbjct: 146 IR--IEDATIR-------DAELERKEARITVRFVADIAAVTHDRDGNMVAGSLDDAIESR 196
Query: 278 DIWVFEKSLFHPGAYWRLC 296
DIW F + + W+L
Sbjct: 197 DIWTFARRVDSRTPDWQLV 215
>gi|338741377|ref|YP_004678339.1| hypothetical protein HYPMC_4566 [Hyphomicrobium sp. MC1]
gi|337761940|emb|CCB67775.1| conserved protein of unknown function, putative membrane protein
[Hyphomicrobium sp. MC1]
Length = 251
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
IAKL S + F A Y+ I + A G++ +L+ +++++Y I RE+
Sbjct: 106 IAKLDPS-LDPESFVAGAGRAYEMIVSAFAEGNRRALKDLLSKEVYDGFTTAIADREARG 164
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK 270
++ + + I K + A + +N + V V+ E ++ + D G +AGD
Sbjct: 165 ETIEQQFVG-IKKAEIVEAEV----KNGVASVTVRFMSELISATR----DKAGQVIAGDA 215
Query: 271 TKEVLVRDIWVFEKSLFHPGA----YWRLCG 297
K V DIW F + + A WRL
Sbjct: 216 QKIKDVTDIWTFSRDVSTAKARSNPNWRLVA 246
>gi|227823867|ref|YP_002827840.1| import inner membrane translocase, subunit Tim44 [Sinorhizobium
fredii NGR234]
gi|227342869|gb|ACP27087.1| putative import inner membrane translocase, subunit Tim44
[Sinorhizobium fredii NGR234]
Length = 233
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 33/204 (16%)
Query: 113 YEPYAPREA-----------IPFWRRWFTR---------DGWRRTKDDIILELKSAYAIA 152
++PY+PREA + RR T DG+ + + +L+ A++
Sbjct: 37 FDPYSPREAQGPEARDNGKVVQLPRRESTAEDESRYAAIDGFSKPGTPLNGQLR---ALS 93
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
S + +F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+
Sbjct: 94 DADPS-FQPAEFLNGAKMAYEMIVMAFADGDRKTLKGLLSREVYEGFETAIAERETRGEV 152
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
V + I K + A L + N +T+ +++ YD +G + GD
Sbjct: 153 VKSTFV-GIEKADIVHAELKDAEEN--------VTVRIISQLISATYDKQGKLIDGDADS 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 204 VAEVNDLWTFARDIRSRDPNWKLI 227
>gi|424889322|ref|ZP_18312925.1| hypothetical protein Rleg10DRAFT_3420 [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393174871|gb|EJC74915.1| hypothetical protein Rleg10DRAFT_3420 [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 234
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 98 AFSPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGEREARGDKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ ++ Q+T+ +++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDLWTFARDTRSRDPNWKLVA 228
>gi|398380837|ref|ZP_10538951.1| hypothetical protein PMI03_04590 [Rhizobium sp. AP16]
gi|397720268|gb|EJK80826.1| hypothetical protein PMI03_04590 [Rhizobium sp. AP16]
Length = 233
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I RE+
Sbjct: 99 FSPKEFVNGARMAYEMIVMAFADGDRNALKGLLSREVYEGFDAAITDRET---------- 148
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D + +T+ +++ YD G + GD
Sbjct: 149 ----KGEKVKSTFVGIDKADIVSAEMKDTEATVTMRIVSQMISATYDKAGTLIDGDAETV 204
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
+ D+W F + W+L
Sbjct: 205 AEISDVWTFARDSRSRDPNWKLV 227
>gi|326386373|ref|ZP_08207996.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209034|gb|EGD59828.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 218
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
F T A Y + GDK +L + +Y + I R+ +V+ LI
Sbjct: 90 FLTGAKAAYGMVLDAFWRGDKDALAQLCERSVYESFAAAIDARKQAGETVDARLI----- 144
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
R AR++ D N ++ + F+A +++G VAG + RD+W F
Sbjct: 145 -RVDDARIVSAD---FNAPVARIAVRFVADVATVTRNTEGTVVAGSLDDAIESRDLWTFS 200
Query: 284 KSLFHPGAYWRL 295
+ L W+L
Sbjct: 201 RDLTSRDPDWQL 212
>gi|209551513|ref|YP_002283430.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|424916216|ref|ZP_18339580.1| hypothetical protein Rleg9DRAFT_3776 [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209537269|gb|ACI57204.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|392852392|gb|EJB04913.1| hypothetical protein Rleg9DRAFT_3776 [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 234
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 98 AFSPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGERETRGEKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ ++ Q+T+ +++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAEITHAETKGSEAQITVRIISQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDLWTFARDTRSRDPNWKLVA 228
>gi|329891166|ref|ZP_08269509.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
gi|328846467|gb|EGF96031.1| tim44-like domain protein [Brevundimonas diminuta ATCC 11568]
Length = 205
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L +A A K R + +F A Y+ I A GD+ +LR +T+K+ + + I
Sbjct: 60 LTAAIAGLKTRDPNFDPHRFLEGARQAYETIVRAYAKGDRDALRPLLTDKVMGSFEAGIA 119
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARL-IGVDRND--LNKVFVQLTLEFLAKQKFEAYDS 261
RE+ + + EL+ RA L + D L KV FLA+ + S
Sbjct: 120 AREARGDAESVELVH------APRADLELATTEGDRALAKV------RFLAEVRGSLTPS 167
Query: 262 KGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G TV T+E +IW FE+ L W L
Sbjct: 168 GGETV----TEERRTAEIWTFERRLGASDPNWALA 198
>gi|194217042|ref|XP_001501754.2| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
mitochondrial-like [Equus caballus]
Length = 304
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 23/179 (12%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G R + + + S +I ++R+ + + + F +A +++ E + + N D
Sbjct: 100 LSKEGLARRAERLKKNVASQLSIRRIRECDANFKIKDFPEKAKNIFIEAHLCLNNSDSDQ 159
Query: 187 LRKAVTEKMYSALKNEIKQR--ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK--V 242
L L N I + + +V W +E + ++ R N LN+ +
Sbjct: 160 LH---------TLGNXIPDMVWDLKYKTVRWSFVESLEPPLVVQVRC----SNLLNQGNM 206
Query: 243 FVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+ Q+T+ +Q YD G + G D K+VL + VFEK L +P WR+ G+I
Sbjct: 207 YGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKHLVNPYGSWRMHGKI 263
>gi|332186336|ref|ZP_08388081.1| tim44-like domain protein [Sphingomonas sp. S17]
gi|332013704|gb|EGI55764.1| tim44-like domain protein [Sphingomonas sp. S17]
Length = 257
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ G+ +F A Y+ GD+ +L + V + A I QR+ +++
Sbjct: 121 EPGFDVNQFLGGAQSAYRMTLEAFWKGDEQALAELVDTDVLGAFAEAIAQRQEAGETLDN 180
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
LI + + + ++L G D ++T+ F A D++G +AG + V
Sbjct: 181 RLIR-VDSAKIVDSQLAGRD--------ARITVRFDADIVAVTRDAEGQVIAGSLSDAVE 231
Query: 276 VRDIWVFEKSLFHPGAYWRLC 296
DIW F ++L W+L
Sbjct: 232 THDIWTFARTLKSGDPNWKLV 252
>gi|300024770|ref|YP_003757381.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526591|gb|ADJ25060.1| import inner membrane translocase subunit Tim44 [Hyphomicrobium
denitrificans ATCC 51888]
Length = 251
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 151 IAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 210
+AKL + + F T A Y+ I + A G++ L+ +++ ++ + I RE+
Sbjct: 106 VAKLDPE-FDPESFVTGAGRAYEMIVSAFAEGNRRMLKDLLSKDVFDGFSSAIADREA-- 162
Query: 211 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVT 265
+ L + +G+ + D+ V+ LT+ F+++ D G
Sbjct: 163 ------------RGEVLDQQFVGIKKADIVDAEVKNGTAALTVRFISELISATRDKAGEV 210
Query: 266 VAGDKTKEVLVRDIWVFE------KSLFHPGAYWRLCG 297
+AGD K V DIW+F K+L +P WRL
Sbjct: 211 IAGDAQKIKDVTDIWIFSRDVSSAKALSNPN--WRLVA 246
>gi|402772722|ref|YP_006592259.1| import inner membrane translocase subunit Tim44 [Methylocystis sp.
SC2]
gi|401774742|emb|CCJ07608.1| Import inner membrane translocase subunit Tim44 [Methylocystis sp.
SC2]
Length = 233
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F + A Y+ I T A GD+ +LR +++ ++ EI +RE S+ ++
Sbjct: 101 FDGKSFVSGARRAYELIVTAFAKGDRETLRPLLSQDVFDGFSAEIARREQQGESMETAVV 160
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I T+ A RN ++T+ F+ + D G T+ G +T++V+ R
Sbjct: 161 --AIDSATVDAARAIAGRN-------EVTVRFVVRLMSVRRDKAGETIDGGQTRKVVER- 210
Query: 279 IWVFEKSLFHPGAYWRLC 296
W F + W+L
Sbjct: 211 -WTFARDAKANDPNWKLI 227
>gi|403530023|ref|YP_006664552.1| hypothetical protein RM11_0091 [Bartonella quintana RM-11]
gi|403232095|gb|AFR25838.1| hypothetical protein RM11_0091 [Bartonella quintana RM-11]
Length = 230
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 154 LRKSG--YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
LR+S +S Q F A Y+ I T A GD+ L+K +++ ++ + I+QRE
Sbjct: 89 LRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRDQLKKLLSQNVFESFCAAIEQREKNNE 148
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
V + + I K+ + A + N+ F LT+ +++ Y+ + + GD
Sbjct: 149 RVQFTFV-GINKIEFVAAAMQD------NEEF--LTVRIVSEMISATYNEQEELIDGDPD 199
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRL 295
V +RD+W F + W+L
Sbjct: 200 AIVEIRDVWTFVHNSLSSDPNWKL 223
>gi|77464817|ref|YP_354321.1| hypothetical protein RSP_1239 [Rhodobacter sphaeroides 2.4.1]
gi|77389235|gb|ABA80420.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 219
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 147 SAYAIA--KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
SA A+A K+ + G+S +F T A Y+ I G+ +R ++ ++ + + +K
Sbjct: 71 SAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQIRPFLSSDVFESFEEAVK 130
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
RE+ SV + +R + DR+ +V Q+ + F+ + D G
Sbjct: 131 AREAEGLSVEATFL----GLREIDIHEASFDRD--TRVG-QVAVRFVGELTSVVRDRTGQ 183
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ G T+ RD+W FE+ + W+L
Sbjct: 184 VIEGSPTEVKRQRDVWTFERRMGANDPNWQLV 215
>gi|126463660|ref|YP_001044774.1| import inner membrane translocase subunit Tim44 [Rhodobacter
sphaeroides ATCC 17029]
gi|332559713|ref|ZP_08414035.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides WS8N]
gi|429207383|ref|ZP_19198642.1| Transporter [Rhodobacter sp. AKP1]
gi|126105324|gb|ABN78002.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17029]
gi|332277425|gb|EGJ22740.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides WS8N]
gi|428189758|gb|EKX58311.1| Transporter [Rhodobacter sp. AKP1]
Length = 219
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)
Query: 147 SAYAIA--KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
SA A+A K+ + G+S +F T A Y+ I G+ +R ++ ++ + + +K
Sbjct: 71 SAKALAGMKMAEPGFSVSEFLTGARGAYEMIVMAFEKGELEQIRPFLSPDVFESFEEAVK 130
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
RE+ SV + +R + DR+ +V Q+ + F+ + D G
Sbjct: 131 AREAEGLSVEATFL----GLREIDIHEASFDRD--TRVG-QVAVRFVGELTSVVRDRTGQ 183
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ G T+ RD+W FE+ + W+L
Sbjct: 184 VIEGSPTEVKRQRDVWTFERRMGANDPNWQLV 215
>gi|225848621|ref|YP_002728784.1| hypothetical protein SULAZ_0804 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643113|gb|ACN98163.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 293
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 10/135 (7%)
Query: 149 YAIAKLRKSGYSKQKFYTE-AVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRE 207
Y+ + L + Y ++ A + + +I + G+ +S+R +T++MY L ++++ +
Sbjct: 150 YSDSTLSTASYINEELILNLAKNAFIDIQKAWSEGNLSSVRNFLTDRMYLYLNSQLQDLK 209
Query: 208 SMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
S L I ++ L A ++ V+ NKV + +E A+ K DS G V
Sbjct: 210 SKG------LRNIIEDVKILNAEIVHVEEEGDNKVVI---VEIEAQAKDYTVDSNGNVVE 260
Query: 268 GDKTKEVLVRDIWVF 282
GDK V+ ++ W F
Sbjct: 261 GDKDNPVVFKEYWAF 275
>gi|49473777|ref|YP_031819.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
gi|49239280|emb|CAF25603.1| hypothetical protein BQ00970 [Bartonella quintana str. Toulouse]
Length = 230
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 154 LRKSG--YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
LR+S +S Q F A Y+ I T A GD+ L+K +++ ++ + I+QRE
Sbjct: 89 LRQSDPHFSPQFFIKGAQVAYEMIVTAFAKGDRDQLKKLLSQNVFESFCAAIEQREKNNE 148
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
V + + I K+ + A + N+ F LT+ +++ Y+ + + GD
Sbjct: 149 RVQFTFV-GINKIEFVAAAMQD------NEEF--LTVRIVSEMISATYNEQEELIDGDPD 199
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRL 295
V +RD+W F + W+L
Sbjct: 200 AIVEIRDVWTFVHNSLSSDPNWKL 223
>gi|395785502|ref|ZP_10465234.1| hypothetical protein ME5_00552 [Bartonella tamiae Th239]
gi|423717599|ref|ZP_17691789.1| hypothetical protein MEG_01329 [Bartonella tamiae Th307]
gi|395425049|gb|EJF91220.1| hypothetical protein ME5_00552 [Bartonella tamiae Th239]
gi|395426999|gb|EJF93115.1| hypothetical protein MEG_01329 [Bartonella tamiae Th307]
Length = 230
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 11/146 (7%)
Query: 154 LRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 211
LRKS ++ Q F Y+ I T ANGDK SL+ + ++Y + I E
Sbjct: 89 LRKSDPSFAPQSFVDGVRVAYEMIVTAFANGDKKSLKPLLAAEVYDGFSDAIDILEKNNE 148
Query: 212 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 271
+V++ + I K+ + A++ VD+ + Q+T+ +++ Y + GD
Sbjct: 149 NVSFTFVG-INKLEMITAQM--VDKEE------QITMRIVSEIISATYQKDETLIDGDPE 199
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
V + D+W F + W+L
Sbjct: 200 TIVEITDVWTFARPSQSNDPNWKLIA 225
>gi|395782259|ref|ZP_10462663.1| hypothetical protein MCY_01060 [Bartonella rattimassiliensis 15908]
gi|395419198|gb|EJF85499.1| hypothetical protein MCY_01060 [Bartonella rattimassiliensis 15908]
Length = 229
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q+F A Y+ I T A GD++ L+ + ++ + I+QRE + +
Sbjct: 95 FSPQRFIKGAQLAYEMIVTAFARGDRSQLKSLLCNDVFESFCTAIEQREKHKERIEF--- 151
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFE-----AYDSKGVTVAGDKTKE 273
IG+++ + +Q EFL + Y+ + + GD
Sbjct: 152 -----------TFIGINKIEFVAAAIQEKDEFLTIRIVSEIISVTYNEQDERIDGDPEAI 200
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RDIW F ++ W+L
Sbjct: 201 VEIRDIWTFVRNSLSSDPNWKL 222
>gi|295691579|ref|YP_003595272.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
ATCC 21756]
gi|295433482|gb|ADG12654.1| import inner membrane translocase subunit Tim44 [Caulobacter segnis
ATCC 21756]
Length = 198
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 150 AIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESM 209
A K R+ + KF T A Y++I T A+GD+ +L+ + ++ + + + RE+
Sbjct: 59 AALKARQPDFDPAKFMTGARAAYEQIVTAYADGDRETLKPLLAPEVMANFEQAMAAREAA 118
Query: 210 WSSVNWE-LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG 268
S E L P + + ++ L+G D K V++ E + K D +G V
Sbjct: 119 GRSEKVEFLTSPRLDLESV--DLVG----DTAKAVVRILAEVRTRTK----DERGEGVDD 168
Query: 269 DKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+T E +W FE+ + + W L
Sbjct: 169 RRTAE-----LWTFEREVRNANPNWLLS 191
>gi|239833115|ref|ZP_04681444.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
gi|239825382|gb|EEQ96950.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium LMG 3301]
Length = 253
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y + I +RE+ SV R+
Sbjct: 132 YEMIVMSFADGDRKVLKNLLSKDVYEGFVSAIDEREARGESV--------------RSSF 177
Query: 232 IGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ ++ +T+ +++ YD G + GD + ++D+W F +
Sbjct: 178 VGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKLIDGDPENVLEIKDLWTFARDT 237
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 238 RSRDPNWKLV 247
>gi|159045985|ref|YP_001534779.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
gi|157913745|gb|ABV95178.1| import inner membrane translocase [Dinoroseobacter shibae DFL 12]
Length = 221
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ G++ +F A Y+ I NGD ++ ++E++ A I+QR +V
Sbjct: 84 EPGFNVTEFLGGAKGAYEWILMSFENGDMDDVQGFLSEELSEAFSEVIEQRNEQGLTVEA 143
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
E + +R DR+ ++T+ F+ + F +++G V GD T+
Sbjct: 144 EFV----GVRETTLVEAAFDRDTREG---EVTVRFVGELTFVVRNAEGEIVEGDPTEIKR 196
Query: 276 VRDIWVFEKSLFHPGAYWRLC 296
+D+W F + + WRL
Sbjct: 197 QKDVWTFARVMGSDDPNWRLV 217
>gi|85374926|ref|YP_458988.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
gi|84788009|gb|ABC64191.1| hypothetical protein ELI_10495 [Erythrobacter litoralis HTCC2594]
Length = 215
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+ F A Y + GDK +LR+ + +Y++ I RE +++ L
Sbjct: 81 GFDVSSFLEGAKGAYGMVLEAYWKGDKETLRELCDDDVYASFAGAIDAREEAGEALDNTL 140
Query: 218 I---EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 274
I + +I+ + R ++T+ F+A D G +AG +
Sbjct: 141 IRIEDAVIRDAEMDGRT------------ARVTVRFVADIAAVTRDKDGNVIAGSLDDAI 188
Query: 275 LVRDIWVFEKSLFHPGAYWRL 295
RDIW F +++ G W L
Sbjct: 189 ESRDIWTFSRNVDAAGPDWVL 209
>gi|84501205|ref|ZP_00999410.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
gi|84390496|gb|EAQ02984.1| transporter, Tim44 family protein [Oceanicola batsensis HTCC2597]
Length = 220
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 139 DDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 196
D + + +A A+A++++ +S +F A Y+ I G+ ++ ++E++Y
Sbjct: 64 DHVPEDSPAAGALARMKQLEPSFSVGEFLGGARGAYEMILMGFERGEMAEIKPFLSEEVY 123
Query: 197 SALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKF 256
+ + + +R++ ++ + + + +++ + A L R +LT+ F+ + F
Sbjct: 124 ESFAHVVNERDAKGLTIEADFV-GVKELQLVDAELDDTSREG------ELTVRFVGQLTF 176
Query: 257 EAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D G + GD RD+W F + + W+L
Sbjct: 177 AVRDRAGEVIEGDPKSIKTQRDVWTFARKMGSDDPNWQLV 216
>gi|344249165|gb|EGW05269.1| 39S ribosomal protein L45, mitochondrial [Cricetulus griseus]
Length = 273
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
R S SK+ T+ D +K+ D L VTE + + ++K + +V
Sbjct: 96 RMSSLSKEGL-TQRTDRFKKNVASQLASDHDRLHTLVTEHCFPDMVWDLK-----YKTVR 149
Query: 215 WELIEPIIKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKT 271
W +E + + + R G V++++L + Q+T+ +Q YD G + G D
Sbjct: 150 WSFVESLEPAQVVHVRSSGLVNQSNL---YGQVTVRLHTRQTLAIYDRFGRLMYGQEDVP 206
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
K+VL + VFE+ L +P WR+ +I
Sbjct: 207 KDVL--EYVVFERHLVNPYGSWRMHAKI 232
>gi|444312369|ref|ZP_21147956.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium M86]
gi|443484282|gb|ELT47097.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
intermedium M86]
Length = 231
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y + I +RE+ SV R+
Sbjct: 110 YEMIVMSFADGDRKVLKNLLSKDVYEGFVSAIDEREARGESV--------------RSSF 155
Query: 232 IGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ ++ +T+ +++ YD G + GD + ++D+W F +
Sbjct: 156 VGIDKAEITGAEMKGSEAHVTVNIVSQMISSTYDKDGKLIDGDPENVLEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 RSRDPNWKLV 225
>gi|451941402|ref|YP_007462039.1| putative translocase transmembrane protein [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
gi|451900789|gb|AGF75251.1| putative translocase transmembrane protein [Bartonella vinsonii
subsp. berkhoffii str. Winnie]
Length = 230
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S F A Y+ I T A GD+ L+K +++ ++ I+QRE + + +
Sbjct: 96 FSPHFFIKGAQVAYEMIVTAFAKGDRDQLKKLLSQDVFERFCAAIEQREKNNEKIQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A + ++ LT+ +++ Y+ KG ++ GD V ++D
Sbjct: 156 -GINKIEFIAAEIQEKEQF--------LTVRIVSEMISMTYNEKGESIDGDPDAIVEIKD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
IW F ++ W+L
Sbjct: 207 IWTFVRNSLSSDPNWKL 223
>gi|116249774|ref|YP_765612.1| hypothetical protein RL0008 [Rhizobium leguminosarum bv. viciae
3841]
gi|424872980|ref|ZP_18296642.1| hypothetical protein Rleg5DRAFT_4500 [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|115254422|emb|CAK05496.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
gi|393168681|gb|EJC68728.1| hypothetical protein Rleg5DRAFT_4500 [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 234
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
+S ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 98 AFSPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGEREARGEKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ ++ Q+T+ ++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAEITHAETKGSEAQITVRIASQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDVWTFARDTRSRDPNWKLVA 228
>gi|426348542|ref|XP_004041892.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Gorilla
gorilla gorilla]
Length = 287
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
++EI + ++ D+ L VTE + + +IK + +V W +E + ++ R
Sbjct: 128 FREIASYSSDHDR--LHTLVTEHCFPDMTWDIK-----YKTVRWSFVESLEPSHVVQVRC 180
Query: 232 IGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHP 289
+ + V+ Q+T+ +Q YD G + G D K+VL + VFEK L +P
Sbjct: 181 SSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKQLTNP 236
Query: 290 GAYWRLCGRI 299
WR+ +I
Sbjct: 237 YGSWRMHTKI 246
>gi|399041307|ref|ZP_10736414.1| hypothetical protein PMI09_03976 [Rhizobium sp. CF122]
gi|398060417|gb|EJL52242.1| hypothetical protein PMI09_03976 [Rhizobium sp. CF122]
Length = 232
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S + ++F A Y+ I A+GD+ +L+ ++ ++Y I RES V
Sbjct: 96 SSFDPKEFVNGARMAYEMIVMAFADGDRKTLKNLLSREVYDGFDAAIADRESKGEKVKST 155
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K A + G + VQ+T+ +++ YD + GD +
Sbjct: 156 FV-GIDKAEITSAEIKGTE--------VQITVRIVSQLISATYDKADKLIDGDAENVAEI 206
Query: 277 RDIWVFEKSLFHPGAYWRLCG 297
D+W F + W+L
Sbjct: 207 NDLWTFARDTRSRDPNWKLVA 227
>gi|298706514|emb|CBJ29484.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 246
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 23/205 (11%)
Query: 106 ISSPGFIYEPYAPREA----IPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GY 159
+ S G I++PY R A +P + +G R + LKS ++K +
Sbjct: 21 VRSSGGIFDPYVYRGAGGKGLP---PMMSSEGVRERLGIMRSHLKSGVCAGIIQKHVPDF 77
Query: 160 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS------V 213
KF A ++K+ GD +L TE++Y++LK EIK +S + V
Sbjct: 78 HVSKFPPVANQIFKDFFEAHRKGDTRALAGLTTEELYASLKGEIKSSKSRGAQRAAFRLV 137
Query: 214 NWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+++ +++MR R + I + Q+T ++++ D+KG V ++
Sbjct: 138 DFKEPTTVLQMRVDRKKHISPKEG-----WGQVTCRLCSERQLLVVDAKGNEVEAKADED 192
Query: 274 VLVRD---IWVFEKSLFHPGAYWRL 295
+ VFE WRL
Sbjct: 193 ATTAQNVTVGVFEAFFGDSAGRWRL 217
>gi|170750111|ref|YP_001756371.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
gi|170656633|gb|ACB25688.1| import inner membrane translocase subunit Tim44 [Methylobacterium
radiotolerans JCM 2831]
Length = 237
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A GD+ +LR +++++ A + I +RE
Sbjct: 103 FDPRAFIEGAKSAYEAIMIAFAKGDRKTLRGLLSKEVGEAFERAIAERER---------- 152
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+TL + +D+ ++ V V +T+ FL+ ++ G V G
Sbjct: 153 ----NRQTLETTFVSIDKAEIVAVEVRNRVAHVTVRFLSNLITATRNADGKVVDGSAETV 208
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V V D+W F ++L W+L
Sbjct: 209 VEVPDVWTFARTLGSRDPNWQLV 231
>gi|118591473|ref|ZP_01548870.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
gi|118435801|gb|EAV42445.1| Calcium-binding EF-hand [Stappia aggregata IAM 12614]
Length = 230
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GDK +L+ ++ ++Y I +RE
Sbjct: 96 FEPEPFLEGARAAYEMIVMAFADGDKKALKNLLSREVYEGFVAAIDEREK---------- 145
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T+ + +G+D+ + L Q+T++ ++ D G V GD K
Sbjct: 146 ----RGETIESTFVGIDKAEIVEAALKNSTAQVTVKIHSQLISATRDKNGEVVDGDPAKV 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + W+L
Sbjct: 202 SEVIDIWTFARDTTSRDPNWKLV 224
>gi|405376988|ref|ZP_11030937.1| hypothetical protein PMI11_00896 [Rhizobium sp. CF142]
gi|397326541|gb|EJJ30857.1| hypothetical protein PMI11_00896 [Rhizobium sp. CF142]
Length = 248
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I A+GD+ SL+ ++ ++Y I RE+
Sbjct: 113 FDPKEFLNGARMAYEMIVMAFADGDRKSLKNLLSREVYDGFDAAISDREN---------- 162
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ ++ Q+T+ +++ YD + GD
Sbjct: 163 ----KGEKMKSTFVGIDKAEITHAETKGSEAQITVRIISQLISATYDKSDALIDGDAENV 218
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 219 AEVNDLWTFARDTRSRDPNWKLVA 242
>gi|423712006|ref|ZP_17686311.1| hypothetical protein MCQ_00875 [Bartonella washoensis Sb944nv]
gi|395412854|gb|EJF79334.1| hypothetical protein MCQ_00875 [Bartonella washoensis Sb944nv]
Length = 230
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L++ +++ ++ + I+QRE V +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRDQLKRLLSQNVFESFCAAIEQREKNNEKVQF--- 152
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+G+++ + VQ LT+ +++ Y+ + + GD
Sbjct: 153 -----------TFVGINKIEFVAAAVQEKEQFLTVRIVSEMISVTYNEQEEPIDGDPDAI 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RD+W F ++ W+L
Sbjct: 202 VEIRDVWTFVRNSLSSDPNWKL 223
>gi|340779279|ref|ZP_08699222.1| mitochondrial import inner membrane translocase subunit Tim44
[Acetobacter aceti NBRC 14818]
Length = 220
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
++SG+ Q+F T ++++ A G++ LR+ +T Y+A I RE
Sbjct: 85 KESGFVPQQFMTGVEGAFRQVVEAYATGNRNVLRERLTPDAYTAFDAAITAREQA-DETQ 143
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKE 273
I I + RL + + + ++ Q D G V G D E
Sbjct: 144 KSAIRGIDSLAIEDVRL----ADGPAGTAASIDVRIVSDQISLLLDKDGKPVTGTDAVTE 199
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
D+W FEK L G+ WRL
Sbjct: 200 --FSDLWTFEKLLGVAGSSWRLA 220
>gi|148556731|ref|YP_001264313.1| import inner membrane translocase subunit Tim44 [Sphingomonas
wittichii RW1]
gi|148501921|gb|ABQ70175.1| import inner membrane translocase, subunit Tim44 [Sphingomonas
wittichii RW1]
Length = 226
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 9/141 (6%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
G+ +F A Y+ I GD+ +LR+ + +Y A I +R
Sbjct: 89 DGGFDAAQFLEGARSAYRMILEAYWRGDEEALRRLTDDDVYEAFAAAITERREA------ 142
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
++ R + +++ +N +T+ F A D +G VAG T V
Sbjct: 143 ---NEVLDNRLVSIESAVIEQARMNGQTANVTVRFDADIAAVTRDGEGNVVAGSLTDAVP 199
Query: 276 VRDIWVFEKSLFHPGAYWRLC 296
D+W F + + W L
Sbjct: 200 THDVWTFSRHVRSDDPNWTLV 220
>gi|347736282|ref|ZP_08868961.1| hypothetical protein AZA_88643 [Azospirillum amazonense Y2]
gi|346920276|gb|EGY01446.1| hypothetical protein AZA_88643 [Azospirillum amazonense Y2]
Length = 243
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
Query: 140 DIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199
D L L++ A + +++F A + I A GD +LR + + +Y+
Sbjct: 90 DGPLSLEAGLARIHQADPSFDERRFLKGAESAFGIIVDAFARGDTGALRPLLADAVYTDF 149
Query: 200 KNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAY 259
I+ R ++ I+ + ++ARL+ + T++F+ Q
Sbjct: 150 AKAIEVRAQAGETLEAH-IQAFDTVDLVQARLL--------EGQALCTVKFITHQTNVTR 200
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D++G V GD V DIW F + WRL
Sbjct: 201 DAQGRVVDGDAEHPAEVVDIWTFARDTKSSDPNWRLV 237
>gi|146278709|ref|YP_001168868.1| import inner membrane translocase subunit Tim44 [Rhodobacter
sphaeroides ATCC 17025]
gi|145556950|gb|ABP71563.1| import inner membrane translocase, subunit Tim44 [Rhodobacter
sphaeroides ATCC 17025]
Length = 219
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 110 GFIYEPYAPREAIPFWRRWF-TRDGW--RRTKDDIILELKSAYAIA--KLRKSGYSKQKF 164
GF P + P RR F +G R D + SA A+A K+ + G+S +F
Sbjct: 31 GFEKPPVPLEDPRPRPRREFEVIEGGPDRDIIDHVTDGSPSAKALAGMKMAEPGFSVSEF 90
Query: 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM 224
T A Y+ I G+ +R ++ +++ + ++ + RE+ SV
Sbjct: 91 LTGARGAYEMIVMAFEKGELEQIRPFLSAEVFESFEDAVNAREAEGLSVE---------- 140
Query: 225 RTLRARLIGVDRNDLNKV-------FVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
A +G+ D+++ Q+ + F+ + + +G V G T+ R
Sbjct: 141 ----ANFLGLREIDIHEASFERDSRIGQIAVRFVGELTSVVRNREGQVVEGSPTEIKRQR 196
Query: 278 DIWVFEKSLFHPGAYWRLC 296
D+W FE+ + W+L
Sbjct: 197 DVWTFERHMGANDPNWQLV 215
>gi|241206951|ref|YP_002978047.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240860841|gb|ACS58508.1| import inner membrane translocase subunit Tim44 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 234
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 19/145 (13%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
++ ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 98 AFTPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGEREARGEKV---- 153
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
++ +G+D+ ++ Q+T+ ++ YD V + GD
Sbjct: 154 ----------KSTFVGIDKAEITHAETKGSEAQITVRIASQLISATYDKADVLIEGDAEN 203
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 204 VAEVNDVWTFARDTRSRDPNWKLVA 228
>gi|319407969|emb|CBI81623.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 230
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S +S Q F Y+ I T A GD+ L+K +++ ++ + I++RE V +
Sbjct: 94 SNFSPQFFVNGVQIAYEMIMTAFAQGDRDQLKKLLSQDVFESFCAAIERREKREEKVEFT 153
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K+ + A + N+ F LT+ +++ Y+ + + GD V +
Sbjct: 154 FV-GINKVEFVAAEM------QKNEEF--LTVRIVSEIISVTYNKQNECIDGDPEAIVEI 204
Query: 277 RDIWVFEKSLFHPGAYWRL 295
+D+W F ++ W+L
Sbjct: 205 KDVWTFVRNSLSQDPNWKL 223
>gi|383644609|ref|ZP_09957015.1| import inner membrane translocase subunit Tim44 [Sphingomonas
elodea ATCC 31461]
Length = 214
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ KF A Y+ + GD+ +LR V + + +A + I R++ ++ LI
Sbjct: 81 FDVAKFLEGAKSAYRMVLEAFWKGDEETLRFLVDDDVRAAFEQAIADRKASGEVLDNRLI 140
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I+ T+ A GV+ N L +V V+ + +A + D++G +AG + V D
Sbjct: 141 --AIERATIAA--AGVE-NKLAQVTVRFDADIVAVTR----DAEGNVIAGSLSDAVTTHD 191
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F + L W+L
Sbjct: 192 VWTFARKLRSDDPNWKLV 209
>gi|218661852|ref|ZP_03517782.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
IE4771]
Length = 234
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I A+GD+ +L+ ++ ++Y I +RES V
Sbjct: 99 FNPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGERESRGEKV----- 153
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
++ +G+D+ ++ Q+T+ +++ YD + GD
Sbjct: 154 ---------KSTFVGIDKAEITHAETKGSEAQITVRIVSQLISATYDKADALIEGDAENV 204
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 205 AEVNDLWTFARDTRSRDPNWKLVA 228
>gi|330843779|ref|XP_003293823.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
gi|325075809|gb|EGC29654.1| hypothetical protein DICPUDRAFT_158742 [Dictyostelium purpureum]
Length = 268
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 14/149 (9%)
Query: 154 LRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSV 213
L ++ Y+K+ F EA D++ ++N +A+G+K L ++ S E+ +++S + +
Sbjct: 117 LDRTRYTKRAFLKEAEDMFIKVNESIADGNKHQL-----NELSSIQFGEVVEKKSGYLNR 171
Query: 214 NWELI---EPIIKMRTL---RARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVA 267
N +L I + L RA I + F Q +EF+ Q + +D K ++
Sbjct: 172 NKDLKFKWSCNITGKNLLWTRAGQIKTSAKS-STFFAQNCVEFIGTQSIQVFDKKNNLIS 230
Query: 268 GDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+K + + ++FE++L + WR+C
Sbjct: 231 ENKDQPFKLE--YIFERNLASTPSMWRVC 257
>gi|158426224|ref|YP_001527516.1| mitochondrial import inner membrane translocase [Azorhizobium
caulinodans ORS 571]
gi|158333113|dbj|BAF90598.1| mitochondrial import inner membrane translocase [Azorhizobium
caulinodans ORS 571]
Length = 279
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A GD+ +L+ +++ ++ I +RE
Sbjct: 145 FDAKHFVEGAKSAYEMIVLAFAAGDRRTLKDLLSKDVFDGFVAAISEREG---------- 194
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T+ +R + +++ ++ + V Q+TL F++K G V G
Sbjct: 195 ----RGETMESRFVAIEKAEIIEASVRGRTGQVTLRFVSKIISATRSRDGAVVDGSADTV 250
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + L W+L
Sbjct: 251 ADVTDVWTFARELGARDPNWKLV 273
>gi|221640736|ref|YP_002526998.1| Import inner membrane translocase subunit Tim44 [Rhodobacter
sphaeroides KD131]
gi|221161517|gb|ACM02497.1| Import inner membrane translocase, subunit Tim44 precursor
[Rhodobacter sphaeroides KD131]
Length = 219
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 147 SAYAIA--KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
SA A+A K+ + G+S +F A Y+ I G+ +R ++ ++ + + +K
Sbjct: 71 SAKALAGMKMAEPGFSVSEFLIGARGAYEMIVMAFEKGELEQIRPFLSPDVFESFEEAVK 130
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
RE+ SV + +R + DR+ +V Q+ + F+ + D G
Sbjct: 131 AREAEGLSVEATFL----GLREIDIHEASFDRD--TRVG-QVAVRFVGELTSVVRDRTGQ 183
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ G T+ RD+W FE+ + W+L
Sbjct: 184 VIEGSPTEVKRQRDVWTFERRMGANDPNWQLV 215
>gi|87198608|ref|YP_495865.1| import inner membrane translocase subunit Tim44 [Novosphingobium
aromaticivorans DSM 12444]
gi|87134289|gb|ABD25031.1| import inner membrane translocase, subunit Tim44 [Novosphingobium
aromaticivorans DSM 12444]
Length = 247
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ +F A Y I GDK L + +Y + I R + +++ LI
Sbjct: 114 FDVAQFLAGAKGAYGMILEAFWRGDKEELAQLCDADVYEGFASAIDARANAGETIDARLI 173
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
R AR+IG + ++ + FLA +++G VAG + RD
Sbjct: 174 ------RIEEARIIGAS---IEGTTARIAVRFLADIASVTRNAEGHVVAGSLDDAIDARD 224
Query: 279 IWVFEKSLFHPGAYWRL 295
+W F + L W L
Sbjct: 225 LWTFRRDLTSRDPDWLL 241
>gi|397478291|ref|XP_003810485.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Pan paniscus]
Length = 161
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 178 LMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRN 237
++ D L VTE + + +IK + +V W +E + ++ R +
Sbjct: 6 FFSSSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWSFVESLEPSHVVQVRCSSM--M 58
Query: 238 DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRL 295
+ V+ Q+T+ +Q YD G + G D K+VL + VFEK L +P WR+
Sbjct: 59 NQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EYVVFEKQLTNPYGSWRM 116
Query: 296 CGRI 299
+I
Sbjct: 117 HTKI 120
>gi|402820051|ref|ZP_10869618.1| hypothetical protein IMCC14465_08520 [alpha proteobacterium
IMCC14465]
gi|402510794|gb|EJW21056.1| hypothetical protein IMCC14465_08520 [alpha proteobacterium
IMCC14465]
Length = 223
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 21/158 (13%)
Query: 146 KSAYAIAKLR--KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
K+A + K+R + F A Y+ I + D+ +++ V+ ++Y +
Sbjct: 75 KTADELTKIRGLDPSFDAGLFIENASTAYEMILRCFSEHDRKTMKPLVSSEVYQGFDQVM 134
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKV-----FVQLTLEFLAKQKFEA 258
K RE S LR +I +DR ++N V ++T+ F A
Sbjct: 135 KSREQEGHS--------------LRTEIISIDRAEINDVELDGSLARITINFEASLASAL 180
Query: 259 YDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
DS G + G K D+W FE+ L W L
Sbjct: 181 TDSAGEVLEGGLEKINNNNDLWSFERDLKKKSPIWVLV 218
>gi|418939423|ref|ZP_13492821.1| import inner membrane translocase subunit Tim44 [Rhizobium sp.
PDO1-076]
gi|375053885|gb|EHS50282.1| import inner membrane translocase subunit Tim44 [Rhizobium sp.
PDO1-076]
Length = 231
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/145 (18%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S ++ ++F A Y+ + A+GD+ +L+ ++ + ++ I RES
Sbjct: 95 SAFNPKEFLNGAKMAYEMVVMAYADGDRKTLKTLLSRDVLEGFESAIADRES-------- 146
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKT 271
+ +++ +G+++ ++ + V Q+T+ ++ YD G + GD
Sbjct: 147 ------RGEVIKSTFVGIEKAEITQASVRDSEEQVTVRIASQLITATYDKAGALIDGDGE 200
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLC 296
V D+W F + + W+L
Sbjct: 201 AVSEVNDVWTFARDIRSRDPNWKLI 225
>gi|297265563|ref|XP_002808078.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L45,
mitochondrial-like [Macaca mulatta]
Length = 497
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +++ E + + N D L VTE + + +IK + +V +E +
Sbjct: 326 KDFPEKAKNIFIEAHLCLNNSDHDRLYTLVTEHCFPDMTWDIK-----YKTVRXSFVESL 380
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 279
++ + + V+ Q+T+ +Q YD G + G D K+VL +
Sbjct: 381 EPSHVVQVHCSSI--MNQGNVYGQVTVCMHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 436
Query: 280 WVFEKSLFHPGAYWRLCGRI 299
VFEK L +P WR+ +I
Sbjct: 437 VVFEKQLTNPYGSWRMYSKI 456
>gi|90420989|ref|ZP_01228893.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
manganoxydans SI85-9A1]
gi|90334767|gb|EAS48543.1| conserved hypothetical protein, Tim44 domain [Aurantimonas
manganoxydans SI85-9A1]
Length = 238
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I T A+GD+ L+ ++ +Y + I +RE + + +
Sbjct: 103 FDPKEFLDGAKVAYEMIVTAFADGDRKLLKNLLSPDVYQGFEQAISEREQRDERMQFSFV 162
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
A ++G ++ D + +TL +A+ V GD V V+D
Sbjct: 163 ------GIDDATIVGAEQKDREAM---VTLRIVAQVISAVVKPDETVVDGDLETVVEVKD 213
Query: 279 IWVFEKSLFHPGAYWRLCG 297
+W F + W+L G
Sbjct: 214 VWTFARDTRSRDPNWKLAG 232
>gi|86355677|ref|YP_467569.1| translocase transmembrane protein [Rhizobium etli CFN 42]
gi|86279779|gb|ABC88842.1| putative translocase transmembrane protein [Rhizobium etli CFN 42]
Length = 234
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S ++F A Y+ + A+GD+ +L+ ++ ++Y + I +RE+ V
Sbjct: 99 FSPKEFLNGARMAYEMVVMAYADGDRKTLKSLLSREVYDGFEAAIGEREARGEKV----- 153
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
++ +G+D+ ++ Q+T+ +++ YD + GD
Sbjct: 154 ---------KSTFVGIDKAEITHAETKGSEAQITVRIVSQLISATYDKADALIEGDAENV 204
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 205 AEVNDLWTFARDTRSRDPNWKLVA 228
>gi|58040316|ref|YP_192280.1| translocase transmembrane protein [Gluconobacter oxydans 621H]
gi|58002730|gb|AAW61624.1| Putative translocase transmembrane protein [Gluconobacter oxydans
621H]
Length = 265
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 158 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 217
G+S F EA ++++ A GD+T+L K +T + I R + +L
Sbjct: 127 GFSPDGFLKEAEGTFRQVVPAFAVGDRTALEKLLTPASMDSFSAAIDARVQAGETQRSDL 186
Query: 218 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
I + L A L+ + D +V ++ ++ +++Q D +G V G +
Sbjct: 187 -RGIESLSILDAMLVSAE--DGTRVG-RIEVKIVSRQVNILTDREGEPVVGTEAVTEF-H 241
Query: 278 DIWVFEKSLFHPGAYWRLC 296
D+W+FE+ A WRL
Sbjct: 242 DLWLFERVAGQSDARWRLA 260
>gi|254500164|ref|ZP_05112315.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
gi|222436235|gb|EEE42914.1| Tim44-like domain family [Labrenzia alexandrii DFL-11]
Length = 245
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GDK +L+ ++ ++ I RE
Sbjct: 111 FEPEPFIQGAKAAYEMIVMAFADGDKKALKNLLSRDVFEGFSAAIDDREK---------- 160
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ T+ + +G+D+ + L Q+T+ ++ D G V GD K
Sbjct: 161 ----RGETIESTFVGIDKAEIVEAALKDTTAQVTVRIHSQLISATRDKGGEVVDGDPAKV 216
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + W+L
Sbjct: 217 TEVIDIWTFARDTATRDPNWKLV 239
>gi|407975432|ref|ZP_11156337.1| import inner membrane translocase subunit Tim44 [Nitratireductor
indicus C115]
gi|407429060|gb|EKF41739.1| import inner membrane translocase subunit Tim44 [Nitratireductor
indicus C115]
Length = 235
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 163 KFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
K +TE + Y+ I A+GD+ +L+ ++ ++Y I +RE + + I
Sbjct: 104 KSFTEGAKMAYEMIVMAFADGDRRTLKNLLSREVYEGFVAAIDEREKRNEKIESSFV-GI 162
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 281
+M + A + G + +TL +++ DS G + GD V+D+W
Sbjct: 163 DRMEIIGAEMKGSE--------AHVTLRIVSELISATRDSAGQVIDGDPETVAEVKDVWT 214
Query: 282 FEKSLFHPGAYWRLC 296
F + W+L
Sbjct: 215 FARDTRARDPNWKLV 229
>gi|167648993|ref|YP_001686656.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
K31]
gi|167351423|gb|ABZ74158.1| import inner membrane translocase subunit Tim44 [Caulobacter sp.
K31]
Length = 199
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 14/153 (9%)
Query: 144 ELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
E S A + R++ + F + A Y+ I A GD+ +L+ + + + + I
Sbjct: 54 EALSGLAALRARQADFDIGHFLSGARQAYEMIVKAFAAGDRETLKPLLAADVMANFEAAI 113
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
RE+ RT +A + R DL+ + V+ + + ++
Sbjct: 114 ADREAAG--------------RTEKAEFLATPRTDLDSIKVEGDVARAVVRILAEVRTRS 159
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ AGD + D+W FE+ L W L
Sbjct: 160 TSAAGDAVDDRRTADLWTFERDLKSRNPNWTLV 192
>gi|319405014|emb|CBI78623.1| Tim44 domain protein [Bartonella sp. AR 15-3]
Length = 230
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L S L S +S Q F +Y+ I T A G++ L++ ++ ++ + I+
Sbjct: 82 LNSGLRAISLADSSFSPQFFINGVQIVYEIIMTAFAQGNRDQLKEHLSSDVFESFCEAIE 141
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGV 264
QRE + + + I K+ + A ++ K LT+ +++ Y+ +
Sbjct: 142 QREKNNERIQFTFV-GINKIEFIAA--------EMQKEEAFLTVRIVSEIISATYNEREE 192
Query: 265 TVAGDKTKEVLVRDIWVFEKSLFHPGAYWRL 295
+ GD + +RDIW F ++ W+L
Sbjct: 193 YIDGDPEAIIEIRDIWTFVRNTTSKNPNWKL 223
>gi|395780399|ref|ZP_10460861.1| hypothetical protein MCW_00948 [Bartonella washoensis 085-0475]
gi|395418745|gb|EJF85062.1| hypothetical protein MCW_00948 [Bartonella washoensis 085-0475]
Length = 230
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F A Y+ I T A GD+ L++ +++ ++ + I+QRE V +
Sbjct: 96 FSPQFFIKGAQVAYEMIVTAFAKGDRDQLKRLLSQNVFESFCAAIEQREKNNEKVQF--- 152
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+G+++ + +Q LT+ +++ Y+ + + GD
Sbjct: 153 -----------TFVGINKIEFVAAAMQEKEQFLTVRIVSEMISVTYNEQEEPIDGDPDAI 201
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
V +RD+W F ++ W+L
Sbjct: 202 VEIRDVWTFVRNSLSSDPNWKL 223
>gi|319780601|ref|YP_004140077.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317166489|gb|ADV10027.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 235
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ ++Y I +RE+
Sbjct: 101 FEPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVYDGFVAAIGEREA---------- 150
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +TL +++ D G + GD
Sbjct: 151 ----KAEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGAVIDGDPETV 206
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V+D+W F + W+L
Sbjct: 207 AEVKDVWTFARDTRSRDPNWKLV 229
>gi|85709415|ref|ZP_01040480.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
gi|85688125|gb|EAQ28129.1| hypothetical protein NAP1_11058 [Erythrobacter sp. NAP1]
Length = 219
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 181 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 240
GDK +LR+ + +Y+ I RE +++ +LI I + R A + G
Sbjct: 108 EGDKDTLRELCDDDVYAGFSAAIDAREEAGHTLDNKLIR-IEETRIHSASMDGR------ 160
Query: 241 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRL 295
++ + F+A D GV VAG + RD+W F +++ W L
Sbjct: 161 --MARIAVLFVADIAAVTRDKDGVVVAGSLDDAIESRDVWTFSRNIGSRDPNWVL 213
>gi|58584799|ref|YP_198372.1| hypothetical protein Wbm0542 [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419115|gb|AAW71130.1| Uncharacterized conserved protein related to eukaryotic translocase
of inner mitochondrial membrane [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 218
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 182 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNK 241
G+ + L+ + + +Y+ +IKQR+ ++ S+ I I+ + L +L+ N
Sbjct: 99 GNLSQLKPLLDKDLYNNFAGKIKQRKEIYESI----IVSIVSQKILEIKLVK------NV 148
Query: 242 VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 297
VF+ + FL++Q + KG ++G + V D+W F+K++ W L
Sbjct: 149 VFI--AVYFLSEQINFVKNDKGDVISGSTSTINKVEDVWQFKKNVTSSNPSWLLTS 202
>gi|433772173|ref|YP_007302640.1| hypothetical protein Mesau_00780 [Mesorhizobium australicum
WSM2073]
gi|433664188|gb|AGB43264.1| hypothetical protein Mesau_00780 [Mesorhizobium australicum
WSM2073]
Length = 235
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ ++Y I +RE+
Sbjct: 101 FDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVYDGFVAAIGEREA---------- 150
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +TL +++ D G + GD
Sbjct: 151 ----KSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDQAGTVIDGDPETV 206
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V+D+W F + W+L
Sbjct: 207 AEVKDVWTFARDTRSRDPNWKLV 229
>gi|395783614|ref|ZP_10463463.1| hypothetical protein ME3_00119 [Bartonella melophagi K-2C]
gi|395425736|gb|EJF91896.1| hypothetical protein ME3_00119 [Bartonella melophagi K-2C]
Length = 230
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S +S Q F Y+ I A GD+ L+K +++ ++ + I+QRE V +
Sbjct: 94 SNFSPQFFINGVQIAYEMIMIAFAQGDRDQLKKLLSQNVFESFCAAIEQREKRKEKVEF- 152
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFE-----AYDSKGVTVAGDKT 271
+G+++ + +Q + EFL + Y+ + + GD
Sbjct: 153 -------------TFVGINKVEFVAAEMQKSEEFLTVRIVSEIISVTYNKQDECIDGDPE 199
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRL 295
V ++D+W F ++ W+L
Sbjct: 200 AIVEIKDVWTFVRNSLSQDPNWKL 223
>gi|218673282|ref|ZP_03522951.1| import inner membrane translocase subunit Tim44 [Rhizobium etli
GR56]
Length = 234
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 99 FNPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGEREARGEKV----- 153
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
++ +G+D+ ++ Q+T+ +++ YD + GD
Sbjct: 154 ---------KSTFVGIDKAEITHAETKGSEAQITVRIVSQLISATYDKADALIEGDAENV 204
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V D+W F + W+L
Sbjct: 205 AEVNDLWTFARDTRSRDPNWKLVA 228
>gi|190889648|ref|YP_001976190.1| translocase transmembrane protein [Rhizobium etli CIAT 652]
gi|190694927|gb|ACE89012.1| putative translocase transmembrane protein [Rhizobium etli CIAT
652]
Length = 233
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ ++ ++F A Y+ I A+GD+ +L+ ++ ++Y I +RE+ V
Sbjct: 97 ASFTPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFDAAIGEREARGEKV--- 153
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKT 271
++ +G+D+ ++ Q+T+ +++ YD V + GD
Sbjct: 154 -----------KSTFVGIDKAEITHAETKGTEAQITVRIVSQLISATYDKADVLIEGDAE 202
Query: 272 KEVLVRDIWVF 282
V D+W F
Sbjct: 203 NVAEVNDLWTF 213
>gi|328909511|gb|AEB61423.1| 39S ribosomal protein l45 mitochondrial-like protein, partial
[Equus caballus]
Length = 257
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 13/202 (6%)
Query: 79 YLNEKRFATAQPKA-PAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 137
+ +EK F KA P + + ++ I++ Y P E +++G R
Sbjct: 55 FKSEKEFVEHARKAGPVIPPERLERPIHLACTAGIFDAYVPPEGDARVSS-LSKEGLARR 113
Query: 138 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195
+ + + S +I ++R+ + + + F +A +++ E + + N D L VTE
Sbjct: 114 AERLKKNVASQLSIRRIRECDANFKIKDFPEKAKNIFIEAHLCLNNSDHDRLHTLVTENC 173
Query: 196 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 255
+ + ++K + WS V E +EP + ++ + L+ + ++ Q+T+ +Q
Sbjct: 174 FPDMVWDLKYKTVRWSFV--ESLEPPLVVQVRCSNLL-----NQGNMYGQITVRMHTRQT 226
Query: 256 FEAYDSKGVTVAG--DKTKEVL 275
YD G + G D K+VL
Sbjct: 227 LAIYDRFGRLMYGQEDVPKDVL 248
>gi|297247302|ref|ZP_06931020.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
gi|297174471|gb|EFH33818.1| hypothetical protein BAYG_00201 [Brucella abortus bv. 5 str. B3196]
Length = 235
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L++ YA+ + +F Y+ I A+GD+ L+ +++ +Y I
Sbjct: 91 LRAIYAVDPT----FEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYEGFVAAID 146
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRN-----DLNKVFVQLTLEFLAKQKFEAY 259
+RE W T+R+ +G+D+ ++ +T+ +++
Sbjct: 147 EREK-WG-------------ETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTL 192
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D G + GD V ++D+W F + W+L
Sbjct: 193 DRDGKVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLV 229
>gi|260884773|ref|ZP_05896387.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
gi|260874301|gb|EEX81370.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 9 str. C68]
Length = 231
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L++ YA+ + +F Y+ I A+GD+ L+ +++ +Y I
Sbjct: 87 LRAIYAV----DPTFEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYEGFVAAID 142
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRN-----DLNKVFVQLTLEFLAKQKFEAY 259
+RE W T+R+ +G+D+ ++ +T+ +++
Sbjct: 143 EREK-WG-------------ETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTL 188
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D G + GD V ++D+W F + W+L
Sbjct: 189 DRDGKVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLV 225
>gi|421589869|ref|ZP_16034951.1| import inner membrane translocase subunit Tim44 [Rhizobium sp.
Pop5]
gi|403705099|gb|EJZ20785.1| import inner membrane translocase subunit Tim44 [Rhizobium sp.
Pop5]
Length = 234
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S ++ ++F A Y+ I A+GD+ +L+ ++ ++Y + I +RE+ V
Sbjct: 97 SSFNPKEFLNGARMAYEMIVMAYADGDRKTLKNLLSREVYDGFEAAIGERETRGEKVKST 156
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K A G + Q+T+ ++ YD + GD V
Sbjct: 157 FV-GIEKAEITHAETKGSE--------AQITVRIASQLISATYDKADALIEGDAENVAEV 207
Query: 277 RDIWVFEKSLFHPGAYWRLCG 297
D+W F + W+L
Sbjct: 208 NDLWTFARDTRSRDPNWKLVA 228
>gi|254450565|ref|ZP_05064002.1| transporter, Tim44 family [Octadecabacter arcticus 238]
gi|198264971|gb|EDY89241.1| transporter, Tim44 family [Octadecabacter arcticus 238]
Length = 224
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Query: 144 ELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
++ A K ++ ++F A Y+ I T GD ++ ++ +Y A +
Sbjct: 75 DMAKALTAMKTADRSFNVREFLRGARGAYEMILTGFEKGDLAEIKPFLSSDVYDAFAGVV 134
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
+ RE S++++ I I + + A +N ++T++FL + YD+ G
Sbjct: 135 ESREKDGLSIDFKFIG-ISETTLVDAEFDETTKN------AEITIKFLNESTSAVYDNGG 187
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
G T+ RD+W F +++ W L
Sbjct: 188 DLKEGSPTEIKKQRDVWTFGRTMGTGDPNWFLV 220
>gi|17988336|ref|NP_540970.1| transporter [Brucella melitensis bv. 1 str. 16M]
gi|17984111|gb|AAL53234.1| transporter [Brucella melitensis bv. 1 str. 16M]
Length = 216
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 23/157 (14%)
Query: 145 LKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204
L++ YA+ + +F Y+ I A+GD+ L+ +++ +Y I
Sbjct: 72 LRAIYAVDPT----FEPARFVDGVKIAYEMIVMSFADGDREVLKNLLSKDVYEGFVAAID 127
Query: 205 QRESMWSSVNWELIEPIIKMRTLRARLIGVDRN-----DLNKVFVQLTLEFLAKQKFEAY 259
+RE + T+R+ +G+D+ ++ +T+ +++
Sbjct: 128 EREK--------------RGETVRSSFVGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTL 173
Query: 260 DSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
D G + GD V ++D+W F + W+L
Sbjct: 174 DRDGKVIDGDPDNVVEIKDLWTFARDTNSRDPNWKLV 210
>gi|83594937|ref|YP_428689.1| hypothetical protein Rru_A3608 [Rhodospirillum rubrum ATCC 11170]
gi|386351702|ref|YP_006049950.1| hypothetical protein F11_18465 [Rhodospirillum rubrum F11]
gi|83577851|gb|ABC24402.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
gi|346720138|gb|AEO50153.1| hypothetical protein F11_18465 [Rhodospirillum rubrum F11]
Length = 219
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 153 KLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSS 212
+L +S + F A ++ I A GDK L+ + +++ I +RE +
Sbjct: 78 QLTDPSFSPEGFLIGAKAAFEMILMAYAKGDKAVLKPLLAGEVFQNFSRAIDEREQADET 137
Query: 213 VNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 272
+ +L+ + LRA + G D +T++F+ +Q D V G+ +
Sbjct: 138 METDLV-GFKSVEILRAGMDGQD--------ALVTVKFVTEQVNSVRDKSDTVVDGNPNQ 188
Query: 273 EVLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + W L
Sbjct: 189 VEEVTDIWTFRRDTVSNDPNWDLI 212
>gi|381165732|ref|ZP_09874959.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
gi|380685222|emb|CCG39771.1| conserved hypothetical protein [Phaeospirillum molischianum DSM
120]
Length = 218
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ F A + + T A GD+ +LR+ ++ ++++ + I + S+ EL+
Sbjct: 83 FDLDTFLAGARAAFSMVVTAFAAGDRETLRQLLSPEVFANFVSVIDAHSARGESLTTELV 142
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I + + A + GV F+++T+ F+++Q +++G + G+ + V V D
Sbjct: 143 S-IRTVEPIDAAVRGV--------FLEITVRFVSEQVNLLRNAEGQVIEGNPDRIVNVTD 193
Query: 279 IWVFEKSLFHPGAYWRLCG 297
W F + W L
Sbjct: 194 EWTFRRDPRAADPNWLLVA 212
>gi|62290918|ref|YP_222711.1| hypothetical protein BruAb1_2049 [Brucella abortus bv. 1 str.
9-941]
gi|423167962|ref|ZP_17154665.1| hypothetical protein M17_01652 [Brucella abortus bv. 1 str. NI435a]
gi|423169662|ref|ZP_17156337.1| hypothetical protein M19_00195 [Brucella abortus bv. 1 str. NI474]
gi|423175348|ref|ZP_17162017.1| hypothetical protein M1A_02744 [Brucella abortus bv. 1 str. NI486]
gi|423177802|ref|ZP_17164447.1| hypothetical protein M1E_02043 [Brucella abortus bv. 1 str. NI488]
gi|423179095|ref|ZP_17165736.1| hypothetical protein M1G_00195 [Brucella abortus bv. 1 str. NI010]
gi|423182226|ref|ZP_17168863.1| hypothetical protein M1I_00195 [Brucella abortus bv. 1 str. NI016]
gi|423186832|ref|ZP_17173446.1| hypothetical protein M1K_01650 [Brucella abortus bv. 1 str. NI021]
gi|62197050|gb|AAX75350.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|374535792|gb|EHR07313.1| hypothetical protein M1A_02744 [Brucella abortus bv. 1 str. NI486]
gi|374539711|gb|EHR11214.1| hypothetical protein M17_01652 [Brucella abortus bv. 1 str. NI435a]
gi|374543341|gb|EHR14824.1| hypothetical protein M19_00195 [Brucella abortus bv. 1 str. NI474]
gi|374549004|gb|EHR20450.1| hypothetical protein M1E_02043 [Brucella abortus bv. 1 str. NI488]
gi|374552039|gb|EHR23468.1| hypothetical protein M1I_00195 [Brucella abortus bv. 1 str. NI016]
gi|374552411|gb|EHR23839.1| hypothetical protein M1G_00195 [Brucella abortus bv. 1 str. NI010]
gi|374557544|gb|EHR28940.1| hypothetical protein M1K_01650 [Brucella abortus bv. 1 str. NI021]
Length = 231
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNMVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|23502922|ref|NP_699049.1| hypothetical protein BR2074 [Brucella suis 1330]
gi|82700829|ref|YP_415403.1| calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
gi|225626454|ref|ZP_03784493.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
Cudo]
gi|237816425|ref|ZP_04595418.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
gi|256370472|ref|YP_003107983.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
gi|340791656|ref|YP_004757121.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|376281717|ref|YP_005155723.1| hypothetical protein BSVBI22_A2070 [Brucella suis VBI22]
gi|384225709|ref|YP_005616873.1| hypothetical protein BS1330_I2068 [Brucella suis 1330]
gi|23348955|gb|AAN30964.1| conserved hypothetical protein [Brucella suis 1330]
gi|82616930|emb|CAJ12031.1| Calcium-binding EF-hand [Brucella melitensis biovar Abortus 2308]
gi|225618111|gb|EEH15154.1| import inner membrane translocase subunit Tim44 [Brucella ceti str.
Cudo]
gi|237788492|gb|EEP62707.1| Tim44-like domain protein [Brucella abortus str. 2308 A]
gi|256000635|gb|ACU49034.1| hypothetical protein BMI_I2096 [Brucella microti CCM 4915]
gi|340560115|gb|AEK55353.1| import inner membrane translocase, subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|343383889|gb|AEM19381.1| hypothetical protein BS1330_I2068 [Brucella suis 1330]
gi|358259316|gb|AEU07051.1| hypothetical protein BSVBI22_A2070 [Brucella suis VBI22]
Length = 235
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 114 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 159
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 160 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 219
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 220 NSRDPNWKLV 229
>gi|336463531|gb|EGO51771.1| hypothetical protein NEUTE1DRAFT_51564 [Neurospora tetrasperma FGSC
2508]
Length = 281
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 127 RWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
R+ + GWR+ +L LK A IA+ + L++++N +A+GD
Sbjct: 100 RFSSMPGWRQKP---LLSLKKAPLIAQTKA--------------LHRQMNEAIASGDAEM 142
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L K V +Y L I+QR + WEL+ + R + ++ + + +K+ Q+
Sbjct: 143 LEKIVDSYLYVPLAVNIEQRPKG-RTCTWELVRYNKEPRIVSHKIFPL-QGTKDKLLWQV 200
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
TL ++Q+ ++ +G V G + + LV ++
Sbjct: 201 TLSIASRQRVVEHE-RGRVVPGSEKELDLVENV 232
>gi|294851303|ref|ZP_06791976.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
gi|294819892|gb|EFG36891.1| hypothetical protein BAZG_00203 [Brucella sp. NVSL 07-0026]
Length = 235
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 114 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 159
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 160 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 219
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 220 NSRDPNWKLV 229
>gi|225853505|ref|YP_002733738.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|256263013|ref|ZP_05465545.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|260562979|ref|ZP_05833465.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
16M]
gi|265992099|ref|ZP_06104656.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|384212423|ref|YP_005601507.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M5-90]
gi|384409525|ref|YP_005598146.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M28]
gi|384446062|ref|YP_005604781.1| transporter [Brucella melitensis NI]
gi|225641870|gb|ACO01784.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis ATCC 23457]
gi|260152995|gb|EEW88087.1| calcium-binding EF-hand protein [Brucella melitensis bv. 1 str.
16M]
gi|263003165|gb|EEZ15458.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 1 str. Rev.1]
gi|263092886|gb|EEZ17061.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 2 str. 63/9]
gi|326410072|gb|ADZ67137.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M28]
gi|326539788|gb|ADZ88003.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis M5-90]
gi|349744051|gb|AEQ09594.1| transporter [Brucella melitensis NI]
Length = 231
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|242012401|ref|XP_002426921.1| import inner membrane translocase subunit TIM44, putative
[Pediculus humanus corporis]
gi|212511150|gb|EEB14183.1| import inner membrane translocase subunit TIM44, putative
[Pediculus humanus corporis]
Length = 474
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)
Query: 158 GYSKQKFYTEA-VDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
G++K KF + D+ I M GD LR + Y+ L IKQ ++M ++ +
Sbjct: 331 GFTKAKFLHQCETDIIPNILEAMVRGDLDILRDWCHDGPYNLLSQPIKQIKAMGGKLDSK 390
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQ---LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+++ + G+D + K+ Q L + F +Q D + GD K
Sbjct: 391 ILD-----------IEGLDLT-VGKIMDQGPVLIITFTCQQIQCVRDKNNKVIDGDPQKV 438
Query: 274 VLVRDIWVF--EKSLFHPGAYWRL 295
+ V +W +KS+ P A WRL
Sbjct: 439 MRVNYVWALSRDKSVLDPKAAWRL 462
>gi|161619988|ref|YP_001593875.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|163844092|ref|YP_001628496.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|189025131|ref|YP_001935899.1| Calcium-binding EF-hand [Brucella abortus S19]
gi|260546180|ref|ZP_05821920.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
gi|260567455|ref|ZP_05837925.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
gi|260755747|ref|ZP_05868095.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 6 str. 870]
gi|260758971|ref|ZP_05871319.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 4 str. 292]
gi|260760695|ref|ZP_05873038.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 2 str. 86/8/59]
gi|261215024|ref|ZP_05929305.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 3 str. Tulya]
gi|261217893|ref|ZP_05932174.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261316550|ref|ZP_05955747.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261321257|ref|ZP_05960454.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|261324015|ref|ZP_05963212.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
5K33]
gi|261751215|ref|ZP_05994924.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261755779|ref|ZP_05999488.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|261759008|ref|ZP_06002717.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
gi|265983069|ref|ZP_06095804.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|265987624|ref|ZP_06100181.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|306839744|ref|ZP_07472546.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
gi|306842810|ref|ZP_07475450.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
gi|306843493|ref|ZP_07476094.1| import inner membrane translocase subunit Tim44 [Brucella inopinata
BO1]
gi|376272208|ref|YP_005150786.1| hypothetical protein BAA13334_I00672 [Brucella abortus A13334]
gi|376275338|ref|YP_005115777.1| hypothetical protein BCA52141_I1886 [Brucella canis HSK A52141]
gi|423190732|ref|ZP_17177340.1| hypothetical protein M1M_02412 [Brucella abortus bv. 1 str. NI259]
gi|161336799|gb|ABX63104.1| import inner membrane translocase subunit Tim44 [Brucella canis
ATCC 23365]
gi|163674815|gb|ABY38926.1| import inner membrane translocase subunit Tim44 [Brucella suis ATCC
23445]
gi|189020703|gb|ACD73425.1| Calcium-binding EF-hand [Brucella abortus S19]
gi|260096287|gb|EEW80163.1| calcium-binding EF-hand protein [Brucella abortus NCTC 8038]
gi|260156973|gb|EEW92053.1| calcium-binding EF-hand protein [Brucella suis bv. 4 str. 40]
gi|260669289|gb|EEX56229.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 4 str. 292]
gi|260671127|gb|EEX57948.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 2 str. 86/8/59]
gi|260675855|gb|EEX62676.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 6 str. 870]
gi|260916631|gb|EEX83492.1| import inner membrane translocase subunit Tim44 [Brucella abortus
bv. 3 str. Tulya]
gi|260922982|gb|EEX89550.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M13/05/1]
gi|261293947|gb|EEX97443.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M644/93/1]
gi|261295773|gb|EEX99269.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis B2/94]
gi|261299995|gb|EEY03492.1| import inner membrane translocase subunit Tim44 [Brucella neotomae
5K33]
gi|261738992|gb|EEY26988.1| calcium-binding EF-hand protein [Brucella sp. F5/99]
gi|261740968|gb|EEY28894.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
5 str. 513]
gi|261745532|gb|EEY33458.1| import inner membrane translocase subunit Tim44 [Brucella suis bv.
3 str. 686]
gi|264659821|gb|EEZ30082.1| import inner membrane translocase subunit Tim44 [Brucella
pinnipedialis M292/94/1]
gi|264661661|gb|EEZ31922.1| import inner membrane translocase subunit Tim44 [Brucella sp.
83/13]
gi|306276184|gb|EFM57884.1| import inner membrane translocase subunit Tim44 [Brucella inopinata
BO1]
gi|306287004|gb|EFM58515.1| import inner membrane translocase subunit Tim44 [Brucella sp. BO2]
gi|306405204|gb|EFM61481.1| import inner membrane translocase subunit Tim44 [Brucella sp. NF
2653]
gi|363399814|gb|AEW16784.1| hypothetical protein BAA13334_I00672 [Brucella abortus A13334]
gi|363403905|gb|AEW14200.1| hypothetical protein BCA52141_I1886 [Brucella canis HSK A52141]
gi|374554502|gb|EHR25913.1| hypothetical protein M1M_02412 [Brucella abortus bv. 1 str. NI259]
Length = 231
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|265993836|ref|ZP_06106393.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
gi|262764817|gb|EEZ10738.1| import inner membrane translocase subunit Tim44 [Brucella
melitensis bv. 3 str. Ether]
Length = 231
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------QGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|153008182|ref|YP_001369397.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
gi|404316701|ref|ZP_10964634.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi CTS-325]
gi|151560070|gb|ABS13568.1| import inner membrane translocase subunit Tim44 [Ochrobactrum
anthropi ATCC 49188]
Length = 231
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 165 YTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 223
+ E V + Y+ I A+GD+ L+ +++ ++ + I RE+ SV
Sbjct: 102 FVEGVKIAYEMIVMSFADGDRKVLKNLLSKDVFEGFVSAIDDRETRGESV---------- 151
Query: 224 MRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
R+ +G+D+ ++ ++ +T+ +++ +D G + GD + ++D
Sbjct: 152 ----RSSFVGIDKAEIAGAEMKGSEAHVTVNIVSQMISSTFDKDGKLIDGDPENVLEIKD 207
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F + W+L
Sbjct: 208 LWTFARDTRSRDPNWKLV 225
>gi|398830727|ref|ZP_10588908.1| hypothetical protein PMI41_03794 [Phyllobacterium sp. YR531]
gi|398213307|gb|EJM99900.1| hypothetical protein PMI41_03794 [Phyllobacterium sp. YR531]
Length = 231
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ +L+ ++ +++ + I RES V + I K + A +
Sbjct: 110 YEMIVMSFADGDRKTLKSLLSREVFDGFVSAIADRESRGEKVQSSFV-GINKAEIIGAEM 168
Query: 232 IGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGA 291
G + + V V++ E ++ D + GDK V V+D+W F +
Sbjct: 169 KGTESH----VTVRVISELISA----TLDKDDAVIDGDKEAVVEVKDVWTFARDTRSKDP 220
Query: 292 YWRLC 296
W+L
Sbjct: 221 NWKLV 225
>gi|409441234|ref|ZP_11268229.1| Transcriptional regulator, LysR family [Rhizobium mesoamericanum
STM3625]
gi|408747529|emb|CCM79426.1| Transcriptional regulator, LysR family [Rhizobium mesoamericanum
STM3625]
Length = 309
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 37 SIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAP----KSLLYLNEKRFATAQPKA 92
S +P++ +I L +H + G+ + +R P +++ +EK F A A
Sbjct: 114 SRLPKLEGDDIHLELVLEHRLADFGEGTDLAIRCGKGPWAGVRAVPLWHEKSFPIA---A 170
Query: 93 PAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDG 133
PA A ++GA SS F+ P I WRRWF DG
Sbjct: 171 PALAARIGA---DCSSQAFLTAPILHDSNIEGWRRWFAADG 208
>gi|46204686|ref|ZP_00049618.2| COG4395: Uncharacterized protein conserved in bacteria
[Magnetospirillum magnetotacticum MS-1]
Length = 223
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 156 KSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 215
+ G+ + F A Y+ I T A GD+ +LR ++ ++Y I +RE +V
Sbjct: 101 EPGFDPRTFLEGAKGAYEIIVTAFAQGDRKTLRPLLSREVYDGFDRVISERERRRETVET 160
Query: 216 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 275
I +A ++ + ++ Q+T+ FL+ D+ G + G+ V
Sbjct: 161 TFIS------IDKAEIVAI---EVKNRAAQITVRFLSNLITATRDADGKVIDGNAETGVE 211
Query: 276 VRDIWVFEKSL 286
V D+W F ++L
Sbjct: 212 VPDVWTFARTL 222
>gi|110635813|ref|YP_676021.1| import inner membrane translocase subunit Tim44 [Chelativorans sp.
BNC1]
gi|110286797|gb|ABG64856.1| import inner membrane translocase, subunit Tim44 [Chelativorans sp.
BNC1]
Length = 235
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 9/153 (5%)
Query: 144 ELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
EL K + F A Y+ I A+GD+ +L+ ++ ++Y + I
Sbjct: 86 ELNRGLRAIKDADPSFDPNTFVDGAKLAYEMIVMAFADGDRRTLKNLLSREVYEGFVSAI 145
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
+RE + + I K + A + G + +TL +++ DS G
Sbjct: 146 DERERRSEKIESSFV-GIDKATIISAEMKGSE--------AHVTLRIVSELISATRDSGG 196
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ GD V+DIW F + W+L
Sbjct: 197 SIIDGDPETVAEVKDIWTFARDTRSRDPNWKLV 229
>gi|357028662|ref|ZP_09090692.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
amorphae CCNWGS0123]
gi|355537929|gb|EHH07179.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
amorphae CCNWGS0123]
Length = 234
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ ++Y I RE+
Sbjct: 100 FDPKTFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVYDGFVAAIGDREA---------- 149
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +TL +++ D G + GD
Sbjct: 150 ----KSEKIQSSFVGIDKADIVAAEMKGGEAHITLRIVSELISATRDKAGTVIDGDPETV 205
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V+D+W F + W+L
Sbjct: 206 AEVKDVWTFARDTRSRDPNWKLV 228
>gi|310794095|gb|EFQ29556.1| hypothetical protein GLRG_04700 [Glomerella graminicola M1.001]
Length = 310
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 161 KQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP 220
+ K EA L++ + MA GDK +LR T ++Y L + +R + WEL+
Sbjct: 139 RAKLVPEAKALHQRLGEAMAAGDKDALRDICTPRLYETLSATVSRRRPA-ERLTWELLRY 197
Query: 221 IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD-SKGVTVAGD 269
+ R + +L + V Q+ + + Q+ D + G +A D
Sbjct: 198 TARPRVVSHKLAVMPPVGRGPVIQQVVVAISSAQRLGKVDRATGRPLAKD 247
>gi|390450525|ref|ZP_10236116.1| import inner membrane translocase subunit Tim44 [Nitratireductor
aquibiodomus RA22]
gi|389662428|gb|EIM73994.1| import inner membrane translocase subunit Tim44 [Nitratireductor
aquibiodomus RA22]
Length = 235
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ ++ + F A Y+ I A+GD+ +L+ ++ ++Y I +RE +
Sbjct: 99 ASFAPKSFVEGAKMAYEMIVMAYADGDRRTLKNLLSREVYEGFVAAIDEREKRSEKIESS 158
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I M + A + G + +TL +++ DS G + GD V
Sbjct: 159 FV-GIDDMTIIAAEMKGSE--------AHVTLRIVSELISATRDSAGEVIDGDPETVAEV 209
Query: 277 RDIWVFEKSLFHPGAYWRLC 296
+D+W F + W+L
Sbjct: 210 KDVWTFARDTRSRDPNWKLV 229
>gi|357601692|gb|EHJ63121.1| putative mitochondrial import inner membrane translocase subunit
tim44 [Danaus plexippus]
Length = 436
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 158 GYSKQKFYTE-AVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
++ QKF + A D+ I M GD L+ E +Y+ L IKQ M ++ +
Sbjct: 293 NFTAQKFLEDCANDIIPNILEAMVRGDMDILKDWCYEGVYNILSAPIKQCRQMGYRLDSK 352
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+++ I + + +++ D V V + F ++Q D+K V GD K + V
Sbjct: 353 ILD-IENIELVMGKMM-----DQGPVLV---ITFQSQQMMCVRDAKNNVVEGDPNKVMRV 403
Query: 277 RDIWVF--EKSLFHPGAYWRL 295
+WV + +P A WRL
Sbjct: 404 NYVWVLCRDPQEMNPKAAWRL 424
>gi|148559170|ref|YP_001259879.1| hypothetical protein BOV_1994 [Brucella ovis ATCC 25840]
gi|148370427|gb|ABQ60406.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
Length = 231
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDRKVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQMISSILDRDGKVIDGDPDNVVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|337265396|ref|YP_004609451.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
gi|336025706|gb|AEH85357.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
opportunistum WSM2075]
Length = 236
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ +++ I +RE+
Sbjct: 102 FDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAAIGEREA---------- 151
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +TL +++ D G + GD
Sbjct: 152 ----KSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPETV 207
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V+D+W F + W+L
Sbjct: 208 AEVKDVWTFARDTRSRDPNWKLV 230
>gi|338982088|ref|ZP_08632320.1| Import inner membrane translocase, subunit Tim44 [Acidiphilium sp.
PM]
gi|338207980|gb|EGO95885.1| Import inner membrane translocase, subunit Tim44 [Acidiphilium sp.
PM]
Length = 108
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 186 SLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ 245
+LR +T +++ + + QR + + E++ I++ A L+G +
Sbjct: 3 ALRPLLTPGVFATFEQAVAQRAEAGETQHTEIVR-IVEATIDEAELLGGE--------AV 53
Query: 246 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ + F++ Q+ D +G +AG + +V D+W FEKSL WRL
Sbjct: 54 IVVRFVSDQQNYTRDRQGQVIAGTEAMTEIV-DLWSFEKSLGAADPTWRLA 103
>gi|338708455|ref|YP_004662656.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
gi|336295259|gb|AEI38366.1| import inner membrane translocase subunit Tim44 [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
Length = 217
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 20/148 (13%)
Query: 155 RKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVN 214
R S + F A Y +I GD+ L +++ + A ++ IK RE+
Sbjct: 78 RDSHFDLTAFIEGAKTAYGKILDAFWQGDRLKLSDMISKDVMEAFEHVIKNRET------ 131
Query: 215 WELIEPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGD 269
+ +L RLI +D+ + K V +T+ + A + +G+ VAG
Sbjct: 132 --------EGHSLENRLINIDKAVVQKAGVDGDNAIITVSYDAWISTIVRNQEGIMVAGS 183
Query: 270 KTKEVLVRDIWVFEKSLFH-PGAYWRLC 296
+ D+W F +++ P W L
Sbjct: 184 SADALPTHDVWTFSRNIRQEPKTSWLLV 211
>gi|390598908|gb|EIN08305.1| hypothetical protein PUNSTDRAFT_134696 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 334
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 146 KSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQ 205
K+ + +A + + Y F DLY +IN +A GD+ ++++ L I++
Sbjct: 162 KNIFQLASTKPNAYMA-NFRRLTKDLYSKINVAVAAGDENTIKQLAIPPYRDRLLTHIRR 220
Query: 206 RESMWSSVNWEL---IEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 260
R+S W+L + P +I +R + + + + F + Q Y+
Sbjct: 221 RQSEDRLYEWKLHRELAPNSVISLRAQELYMSTKPPVTGQRWLIHALVRFDSLQTLSTYN 280
Query: 261 SKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRL 295
+G+ + KE V+D VFEK + + W++
Sbjct: 281 RRGMLIKRTDPKE--VKDYLVFEKKTWLSDSRWQI 313
>gi|451940150|ref|YP_007460788.1| putative translocase transmembrane protein [Bartonella australis
Aust/NH1]
gi|451899537|gb|AGF74000.1| putative translocase transmembrane protein [Bartonella australis
Aust/NH1]
Length = 230
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 11/138 (7%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F Y+ I T A GD+ L+K +++ ++ + I++RE V + +
Sbjct: 96 FSPQFFMNGVQIAYEMIVTAFAQGDRDKLKKLLSQDVFESFCTAIERREGSNEKVQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNK-VFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 277
+A I + + V V++ E ++ Y+ +G V GD V ++
Sbjct: 156 ------GINKAEFIAAEAQKREEFVTVRIVSEIISV----TYNERGERVDGDPEAIVEIK 205
Query: 278 DIWVFEKSLFHPGAYWRL 295
D+W F + W+L
Sbjct: 206 DVWTFVRDSTSRDPNWKL 223
>gi|121602069|ref|YP_989543.1| Tim44 domain-containing protein [Bartonella bacilliformis KC583]
gi|421761343|ref|ZP_16198146.1| Tim44 domain-containing protein [Bartonella bacilliformis INS]
gi|120614246|gb|ABM44847.1| Tim44 domain protein [Bartonella bacilliformis KC583]
gi|411173127|gb|EKS43175.1| Tim44 domain-containing protein [Bartonella bacilliformis INS]
Length = 230
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
S +S Q F Y+ I T A G++ L++ +++ ++ + I+QRE + +
Sbjct: 94 SSFSPQFFINGVQVAYEMIMTAFAQGNRDQLKELLSQNVFESFCKAIEQREKRNERIQFT 153
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I K+ + A + R +L LT+ +++ Y+ + + GD V +
Sbjct: 154 FV-GINKVEFIAAEM--QKREEL------LTVRIVSEIISVIYNEQEERIDGDPEAIVEI 204
Query: 277 RDIWVFEKSLFHPGAYWRL 295
RD+W F + W+L
Sbjct: 205 RDVWTFVRDSVSKNPNWKL 223
>gi|261221124|ref|ZP_05935405.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|265997084|ref|ZP_06109641.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
gi|260919708|gb|EEX86361.1| import inner membrane translocase subunit Tim44 [Brucella ceti
B1/94]
gi|262551552|gb|EEZ07542.1| import inner membrane translocase subunit Tim44 [Brucella ceti
M490/95/1]
Length = 231
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A+GD+ L+ +++ +Y I +RE + T+R+
Sbjct: 110 YEMIVMSFADGDREVLKNLLSKDVYEGFVAAIDEREK--------------RGETVRSSF 155
Query: 232 IGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
+G+D+ ++ +T+ +++ D G + GD V ++D+W F +
Sbjct: 156 VGIDKAGIAGAEMKGSEAHVTVNIVSQIISSTLDRDGKVIDGDPDNVVEIKDLWTFARDT 215
Query: 287 FHPGAYWRLC 296
W+L
Sbjct: 216 NSRDPNWKLV 225
>gi|13473820|ref|NP_105388.1| hypothetical protein mlr4544 [Mesorhizobium loti MAFF303099]
gi|14024571|dbj|BAB51174.1| mlr4544 [Mesorhizobium loti MAFF303099]
Length = 211
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ +++ I +RE+
Sbjct: 77 FDPKGFVDGAKMAYEMIVMAYADGDRKTLKNLLSREVFDGFVAAIGEREA---------- 126
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
K +++ +G+D+ D+ ++ +TL +++ D G + GD
Sbjct: 127 ----KSEKIQSSFVGIDKADIVSAEMKGGEAHVTLRIISELISATRDKAGTVIDGDPETV 182
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V+D+W F + W+L
Sbjct: 183 AEVKDVWTFARDTRSRDPNWKLI 205
>gi|350297248|gb|EGZ78225.1| hypothetical protein NEUTE2DRAFT_51272 [Neurospora tetrasperma FGSC
2509]
Length = 281
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 127 RWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
R+ + GWR+ +L LK A IA+ + L++++N +A+GD
Sbjct: 100 RFSSMPGWRQKP---LLSLKKAPLIAQTKA--------------LHRQMNEAIASGDAEM 142
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L K V +Y L I+QR + WEL+ + R + ++ + + +K+ Q+
Sbjct: 143 LEKIVDSYLYVPLAVNIEQRPKG-RTCTWELVRYNKEPRIVSHKIFPL-QGTKDKLLWQV 200
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
T+ ++Q+ ++ +G V G + + LV ++
Sbjct: 201 TVSIASRQRVVEHE-RGKVVPGSEKELDLVENV 232
>gi|307943366|ref|ZP_07658710.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
TrichSKD4]
gi|307772996|gb|EFO32213.1| import inner membrane translocase subunit Tim44 [Roseibium sp.
TrichSKD4]
Length = 244
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ ++F A Y+ I T A GD+ +L++ +++ ++ I +RE
Sbjct: 110 FEPREFIEGASAAYEMIVTAFAEGDRKTLKQLLSKDVFDGFIMAIDEREK---------- 159
Query: 219 EPIIKMRTLRARLIGVDRND-----LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ + + +G+D+ + L Q+T++ ++ D G V GD K
Sbjct: 160 ----RDEVIESTFVGIDKAEIVEAALKDGTAQVTVKVQSQLISATCDKDGEVVDGDPNKV 215
Query: 274 VLVRDIWVFEKSLFHPGAYWRLC 296
V DIW F + W+L
Sbjct: 216 SEVIDIWTFARDTGSRDPNWKLV 238
>gi|319406501|emb|CBI80142.1| Tim44 domain protein [Bartonella sp. 1-1C]
Length = 230
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F +Y+ I T A GD+ L++ ++ ++ + I+ RE + + +
Sbjct: 96 FSPQFFVNGVQIVYEIIMTAFAQGDRNRLKEHLSSDVFESFCEAIELREKNNERIQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A ++ K LT+ +++ Y+ + + G+ + +RD
Sbjct: 156 -GISKIEFIAA--------EMQKEEALLTVRIISEMISATYNEQEECIEGNPEAIIEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
IW F +++ W+L
Sbjct: 207 IWTFIRNITSKNPNWKL 223
>gi|126734398|ref|ZP_01750145.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
CCS2]
gi|126717264|gb|EBA14128.1| import inner membrane translocase, subunit Tim44 [Roseobacter sp.
CCS2]
Length = 220
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 146 KSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203
SA A+A ++++ ++ +F A Y+ I NGD S+ ++E +Y A + +
Sbjct: 71 DSAKALADMKRADPSFNVSEFLGGARGAYEMILMAFENGDLDSIVPFISEDVYEAFASVV 130
Query: 204 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 263
+R+ +V+ + I I TL + +D +K ++++ F ++ D+ G
Sbjct: 131 DERQRQGLTVDAKFIG--ISDMTLTEAVF----DDFSKEG-EVSVRFKSEMTSVVRDNAG 183
Query: 264 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLC 296
+ G +T+ +D W F + + WRL
Sbjct: 184 DIIEGSETEIKRQKDTWTFARKMDADDPNWRLV 216
>gi|85112444|ref|XP_964347.1| hypothetical protein NCU01983 [Neurospora crassa OR74A]
gi|28926125|gb|EAA35111.1| hypothetical protein NCU01983 [Neurospora crassa OR74A]
gi|38567071|emb|CAE76368.1| hypothetical protein [Neurospora crassa]
Length = 281
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 127 RWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
R+ + GWR+ +L LK A IA+ + L++++N +A+GD
Sbjct: 100 RFSSMPGWRQKP---LLSLKKAPLIAQTKA--------------LHRQMNEAIASGDAEM 142
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 246
L K V +Y L I+QR + WEL+ + R + ++ + + +K+ Q+
Sbjct: 143 LEKIVDSYLYVPLAVNIEQRPKG-RTCTWELVRYNKEPRIVSHKIFPL-QGTKDKLLWQV 200
Query: 247 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
T+ ++Q+ ++ +G V G + + LV ++
Sbjct: 201 TVSIASRQRVVEHE-RGRVVPGSEKELDLVENV 232
>gi|330813377|ref|YP_004357616.1| translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter sp. IMCC9063]
gi|327486472|gb|AEA80877.1| putative translocase transmembrane protein with Tim44 Pfam domain
[Candidatus Pelagibacter sp. IMCC9063]
Length = 193
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 172 YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARL 231
Y+ I A GDK SL+ +T+K+Y + I R K T
Sbjct: 63 YEMIINAFAKGDKQSLKPLLTKKLYLDFEKIIDDRNE--------------KKLTSSLTF 108
Query: 232 IGVDRNDLNKVF-----VQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL 286
IG+++ ++KV ++T F+++ + KG V GD K D+W FE+ L
Sbjct: 109 IGIEKMSIDKVSNVNTKYKVTARFISQIINCLKNEKGEVVEGDAEKTKTTTDVWSFERDL 168
Query: 287 FHPGAYWRLC 296
W L
Sbjct: 169 KDSDPTWYLT 178
>gi|395827088|ref|XP_003786740.1| PREDICTED: 39S ribosomal protein L45, mitochondrial [Otolemur
garnettii]
Length = 399
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G ++ + + + S ++ K+++ + + + F +A D++ E + + N
Sbjct: 119 LSKEGLKQRTERLKKKAASQLSLRKIKEYDADFKIKDFPEKAKDIFVEAHLCLNNNSSRV 178
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIG-VDRNDLNKVFVQ 245
+ + M ++ + +V W +E + + + ++ R V++++L + Q
Sbjct: 179 RELPIWKDMVWDIR---------YKTVRWRFVESLEQPQVVQIRCSSLVNQSNL---YGQ 226
Query: 246 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 299
+T+ +Q YD G + G + V + VFEK L +P WR+ G+I
Sbjct: 227 VTVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKHLTNPYGSWRMHGKI 280
>gi|408369245|ref|ZP_11167026.1| histidine kinase [Galbibacter sp. ck-I2-15]
gi|407744991|gb|EKF56557.1| histidine kinase [Galbibacter sp. ck-I2-15]
Length = 820
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 110 GFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILEL-------KSAYAIAKLRKSGYSKQ 162
GF+++PY+P + + DG +TK +E+ K + + LR S
Sbjct: 668 GFLFKPYSPEQLLQTISEALEEDGSFQTK---TIEIHQNQNQNKQEHQLFDLR----SLA 720
Query: 163 KFYTE--AVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP 220
F + A+ E+ T+ + D SL+KA+ +K Y +++ + ++M+ +N + + P
Sbjct: 721 SFLEDELAIKNVLEVFTVNTHKDLKSLKKAIDKKDYQTVRDLGHKMQTMFKQINAQTVVP 780
Query: 221 II 222
++
Sbjct: 781 LL 782
>gi|319898295|ref|YP_004158388.1| hypothetical protein BARCL_0116 [Bartonella clarridgeiae 73]
gi|319402259|emb|CBI75797.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 230
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 163 KFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+F+ V + Y+ I T A GD+ L++ ++ ++ + I+QRE + +
Sbjct: 99 RFFMNGVQIVYEMIMTAFAQGDRVKLKEHLSSDVFESFCAAIEQREKNNERIQF------ 152
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+G++R + +Q LT+ +++ Y+ + + G+ + +
Sbjct: 153 --------TFVGINRIEFIAAEMQKKEAFLTVRIVSEMISATYNEQEECIDGNPEAIIEI 204
Query: 277 RDIWVFEKSLFHPGAYWRL 295
RDIW F ++ W+L
Sbjct: 205 RDIWTFVRNTTSQSPNWKL 223
>gi|359788462|ref|ZP_09291438.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359255719|gb|EHK58615.1| import inner membrane translocase subunit Tim44 [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 234
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ + F A Y+ I A+GD+ +L+ ++ +Y I RE
Sbjct: 100 FDPKNFVDGAKMAYEMIVMAYADGDRKTLKNLLSRDVYDGFVAAIADREK---------- 149
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQ-----LTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ +++ +G+D+ D+ ++ +TL +++ D+ G + GD
Sbjct: 150 ----RNEKIQSSFVGIDKADIVSAEMKNGEAHITLRIVSELISATRDNAGAVIDGDPETV 205
Query: 274 VLVRDIWVFEKSLFHPGAYWRLCG 297
V+D+W F + W+L
Sbjct: 206 AEVKDVWTFARDTRSRDPNWKLVA 229
>gi|103487499|ref|YP_617060.1| import inner membrane translocase subunit Tim44 [Sphingopyxis
alaskensis RB2256]
gi|98977576|gb|ABF53727.1| import inner membrane translocase, subunit Tim44 [Sphingopyxis
alaskensis RB2256]
Length = 221
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+ +F A Y+ I GD+ +LR + Y A I RE+
Sbjct: 88 FDAGRFMEGARAAYRMILEAFWKGDRETLRDLCDDDSYDAFVEAIDAREA---------- 137
Query: 219 EPIIKMRTLRARLIGVDRN-----DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKE 273
+ TL RLI +D +LN+ ++T+ + A D+ G +AG +
Sbjct: 138 ----RGETLENRLIRIDSAKITAAELNRGEARITVRYHADISAITRDADGKLIAGSMSDA 193
Query: 274 VLVRDIWVFEKSLFHPGAYWRL 295
D+W F + + W L
Sbjct: 194 AQTDDLWTFRRQIGSNDPNWLL 215
>gi|403411509|emb|CCL98209.1| predicted protein [Fibroporia radiculosa]
Length = 747
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 168 AVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRES----MWSSVNWELIEPIIK 223
A+D YK ++ +A+ D+ ++++ M S +Q++S W I+
Sbjct: 161 ALDTYKRVHQAVADRDERTIKQLCIADMQSHYLKLARQQDSSRVYTWKFHGERSPCRIVS 220
Query: 224 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFE 283
+RT+ A + V N +++ VQ + F Q + KG + G +V V + VF+
Sbjct: 221 LRTVPAHMGRVVPNGGSRLLVQALVRFDTLQSLNIFSKKGTLLHGQAEPKV-VMEYLVFQ 279
Query: 284 KSLFH 288
K +++
Sbjct: 280 KRMWY 284
>gi|304320483|ref|YP_003854126.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
HTCC2503]
gi|303299385|gb|ADM08984.1| hypothetical protein PB2503_04547 [Parvularcula bermudensis
HTCC2503]
Length = 222
Score = 37.4 bits (85), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 113 YEPY-APREAIPFWRRWFTRDGWRRTKDDIIL----ELKSAYAIAKLRKSGYSK---QKF 164
+EP A RE I RDG +D+ ++ + K A A+ ++ Y+ +F
Sbjct: 30 HEPTDAERERIGLPTGRPERDGQGTQEDEAVVAPRSDAKPLPAWAETVRADYADFDPDEF 89
Query: 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKM 224
T A Y+ I ANG +R V + + ++ R++
Sbjct: 90 VTGAKAAYEMIIEAFANGRLDDVRAYVDPDVMRTFEIAVRGRDN--------------AQ 135
Query: 225 RTLRARLIGVDRNDL-----NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 279
+T+ L+G++R ++ + +T++F + Q +++G + GD + LV D
Sbjct: 136 QTMEVTLVGIERAEVVEAKRQSAHLDVTVKFRSDQIRVTRNAEGDVIEGDPNRIDLVIDR 195
Query: 280 WVFEKSLFHPGAYWRLC 296
W F + L W L
Sbjct: 196 WTFSRPLSSTDPNWTLT 212
>gi|407778208|ref|ZP_11125473.1| import inner membrane translocase subunit Tim44 [Nitratireductor
pacificus pht-3B]
gi|407299889|gb|EKF19016.1| import inner membrane translocase subunit Tim44 [Nitratireductor
pacificus pht-3B]
Length = 235
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Query: 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 216
+ + + F A Y+ I A+GD+ +L+ ++ ++Y I +RE +
Sbjct: 99 ASFQPKSFVEGAKMAYEMIVMAYADGDRRTLKNLLSREVYEGFVAAIDEREKRKEKIESS 158
Query: 217 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 276
+ I M + A + G + +TL +++ DS G + GD V
Sbjct: 159 FV-GIDGMDIIAAEMKGSE--------AHVTLRVVSELISATRDSAGEVIDGDPETVAEV 209
Query: 277 RDIWVFEKSLFHPGAYWRLC 296
+D+W F + W+L
Sbjct: 210 KDVWTFARDTRARDPNWKLV 229
>gi|319403587|emb|CBI77169.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 230
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
+S Q F +Y+ I T A GD+ L++ ++ ++ + I+ RE + + +
Sbjct: 96 FSPQFFVNGVQIVYEIIMTAFAQGDRNQLKEHLSSDVFESFCEAIELREKNNERIQFTFV 155
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I K+ + A ++ K LT+ +++ Y+ + + G+ + +RD
Sbjct: 156 -GISKIEFIAA--------EMQKEEAFLTVRIVSEIISATYNEQEECIEGNPEAIIEIRD 206
Query: 279 IWVFEKSLFHPGAYWRL 295
IW F +++ W+L
Sbjct: 207 IWTFVRNITSKNPNWKL 223
>gi|254440619|ref|ZP_05054113.1| Tim44-like domain family [Octadecabacter antarcticus 307]
gi|198256065|gb|EDY80379.1| Tim44-like domain family [Octadecabacter antarcticus 307]
Length = 219
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I T GD ++ ++ +Y A ++ RE SV+++ I
Sbjct: 85 FNVREFLRGARGAYEMILTGFEKGDIAEIKPFLSSDVYDAFAGVVEAREKDGLSVDFKFI 144
Query: 219 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRD 278
I + + A +N +++++FL + YD G G T RD
Sbjct: 145 G-ISETTLVDAEFDETTKN------AEISIKFLCESTSAVYDKGGDLKEGSATDIKKQRD 197
Query: 279 IWVFEKSLFHPGAYWRLC 296
+W F +++ W L
Sbjct: 198 VWTFGRTMGTGDPNWFLV 215
>gi|254472289|ref|ZP_05085689.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
gi|211958572|gb|EEA93772.1| import inner membrane translocase, subunit Tim44 [Pseudovibrio sp.
JE062]
Length = 248
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 61/146 (41%), Gaps = 21/146 (14%)
Query: 159 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI 218
++ ++F A Y+ I A GD+ +L+ ++ ++++ I RES
Sbjct: 113 FNPKEFVEGARGAYEIILMSFAQGDRRTLKDLLSPEVFTGFSAAIDDRES---------- 162
Query: 219 EPIIKMRTLRARLIGVDRNDL-NKVFVQ------LTLEFLAKQKFEAYDSKGVTVAGDKT 271
+ + + +G+D+ D+ VF Q +T+ F ++ DS+ V GD T
Sbjct: 163 ----RNERVESTFVGIDKADIVEAVFNQKDSLAEVTVRFKSQLITATRDSENRIVDGDPT 218
Query: 272 KEVLVRDIWVFEKSLFHPGAYWRLCG 297
+ DIW F + W+L
Sbjct: 219 AVSELTDIWTFARVTGVNDPNWKLVA 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,449,159,503
Number of Sequences: 23463169
Number of extensions: 169052712
Number of successful extensions: 452381
Number of sequences better than 100.0: 406
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 452014
Number of HSP's gapped (non-prelim): 412
length of query: 301
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 160
effective length of database: 9,050,888,538
effective search space: 1448142166080
effective search space used: 1448142166080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)