Query 022191
Match_columns 301
No_of_seqs 142 out of 1612
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 9.5E-08 3.3E-12 73.3 6.5 66 206-272 39-105 (137)
2 3b5d_A Multidrug transporter E 98.5 8.4E-07 2.9E-11 65.5 10.0 72 51-122 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.4 3.9E-07 1.3E-11 69.8 6.7 71 51-121 33-104 (137)
4 3b5d_A Multidrug transporter E 98.2 7E-06 2.4E-10 60.5 8.9 64 207-271 40-104 (110)
5 3l1l_A Arginine/agmatine antip 72.9 10 0.00034 33.9 7.7 26 253-278 409-434 (445)
6 3rko_J NADH-quinone oxidoreduc 67.6 30 0.001 27.2 8.3 25 238-263 127-151 (184)
7 2jp3_A FXYD domain-containing 35.6 36 0.0012 21.7 3.1 21 255-275 23-43 (67)
8 2zxe_G FXYD10, phospholemman-l 25.9 41 0.0014 21.9 2.2 20 255-274 25-44 (74)
9 2jo1_A Phospholemman; FXYD1, N 16.5 1.3E+02 0.0043 19.4 2.9 35 255-289 22-56 (72)
10 2klu_A T-cell surface glycopro 16.1 69 0.0024 20.4 1.6 40 256-295 17-56 (70)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.57 E-value=9.5e-08 Score=73.27 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHh-hhhhhHHHHHhHHhhcCCcccchhhhHHHHHHHHHHHHhhhhh
Q 022191 206 CTFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 272 (301)
Q Consensus 206 ~~~~~~~~~~~~i~~~~a~~~s~~-~~l~~v~~~~~~~~~fge~~~t~~~iiG~~lil~g~~~~~~~~ 272 (301)
...+.++.+..++++.++.++..+ ..+.|+.+.++|+++|||+ +++.+++|++++++|+++.+..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 344445567788999999988887 8999999999999999999 99999999999999999987544
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.51 E-value=8.4e-07 Score=65.54 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHHHH-HHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhheeeeecc
Q 022191 51 VIPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE 122 (301)
Q Consensus 51 ~~~~~~~~~~~~~~~~~al~~~~~~~~~vl-~~~~pi~~~~~~~~~~~e~~s~~~~~~~~~~~~Gv~l~~~~~ 122 (301)
.+...+++.....+...++++.|.+.+..+ ..+.|+++++++++++||++++.+++++.++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456667788899999999999999999888 899999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.43 E-value=3.9e-07 Score=69.84 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHHHH-HHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhheeeeec
Q 022191 51 VIPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 121 (301)
Q Consensus 51 ~~~~~~~~~~~~~~~~~al~~~~~~~~~vl-~~~~pi~~~~~~~~~~~e~~s~~~~~~~~~~~~Gv~l~~~~ 121 (301)
.+...+++.+.+.+++.++++.|++.+..+ .++.|++++++++++++|++++.+++|+.++++|+.+....
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 466677788899999999999999998888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.22 E-value=7e-06 Score=60.52 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHh-hhhhhHHHHHhHHhhcCCcccchhhhHHHHHHHHHHHHhhhh
Q 022191 207 TFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 271 (301)
Q Consensus 207 ~~~~~~~~~~~i~~~~a~~~s~~-~~l~~v~~~~~~~~~fge~~~t~~~iiG~~lil~g~~~~~~~ 271 (301)
....+.....++++.+..++... ..+.|+.+.++++++|||+ +++.+++|+.+++.|+...+..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 33445556778999999999777 8999999999999999999 9999999999999999988654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=72.90 E-value=10 Score=33.88 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhchhhhh
Q 022191 253 INLFGYGIAIAGVAAYNNHKLKKEAS 278 (301)
Q Consensus 253 ~~iiG~~lil~g~~~~~~~~~~~~~~ 278 (301)
....|..+++.|..+|...+++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 45668888889999988766554443
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=67.62 E-value=30 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=20.0
Q ss_pred HHhHHhhcCCcccchhhhHHHHHHHH
Q 022191 238 VLFSALLFADTKLTIINLFGYGIAIA 263 (301)
Q Consensus 238 ~~~~~~~fge~~~t~~~iiG~~lil~ 263 (301)
--+|..+|++. .=+..+.+..+..+
T Consensus 127 ~~iG~~Lft~Y-~lpFElaSvlLLvA 151 (184)
T 3rko_J 127 KAVGITLFGPY-VLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHHTTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 46788889999 88889998877644
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.56 E-value=36 Score=21.75 Aligned_cols=21 Identities=38% Similarity=0.398 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhhhhhchh
Q 022191 255 LFGYGIAIAGVAAYNNHKLKK 275 (301)
Q Consensus 255 iiG~~lil~g~~~~~~~~~~~ 275 (301)
+++.++.++|+++....|-+.
T Consensus 23 ifA~vLfi~GI~iilS~kcrC 43 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKC 43 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHcCcccc
Confidence 555667777877766554443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.92 E-value=41 Score=21.94 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHhhhhhch
Q 022191 255 LFGYGIAIAGVAAYNNHKLK 274 (301)
Q Consensus 255 iiG~~lil~g~~~~~~~~~~ 274 (301)
+++.++.++|+++....|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 45566777787776655433
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=16.49 E-value=1.3e+02 Score=19.45 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhchhhhhhcccccccccc
Q 022191 255 LFGYGIAIAGVAAYNNHKLKKEASRAISDDSQQTQ 289 (301)
Q Consensus 255 iiG~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (301)
++++++.++|+++....+-+.+.+++.+..+.-+.
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e 56 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEE 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccc
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=16.06 E-value=69 Score=20.45 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhhcccccccccccccccC
Q 022191 256 FGYGIAIAGVAAYNNHKLKKEASRAISDDSQQTQLTATTT 295 (301)
Q Consensus 256 iG~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (301)
+-..+.+.|..++...+-+++++...+.+..+.-++|+-|
T Consensus 17 ~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrlLsEKKT 56 (70)
T 2klu_A 17 VAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRLLSEKKT 56 (70)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Done!