Query 022191
Match_columns 301
No_of_seqs 142 out of 1612
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 15:25:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 24.9 35 0.0025 15.8 2.9 16 128-143 3-18 (27)
2 d1iwga8 f.35.1.1 (A:513-566,A: 17.1 1.8E+02 0.013 21.1 11.7 30 235-265 95-124 (222)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 13.2 1.4E+02 0.01 21.4 5.1 33 235-268 77-109 (199)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 8.8 4.4E+02 0.032 20.9 18.0 121 50-174 198-326 (383)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 8.2 90 0.0065 19.8 2.0 20 257-276 38-57 (100)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.4 1.3E+02 0.0098 19.2 2.2 16 259-274 46-61 (107)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 6.3 69 0.0051 20.0 0.6 17 261-277 31-47 (91)
8 d1pv7a_ f.38.1.2 (A:) Lactose 3.8 7E+02 0.051 17.9 12.6 7 146-152 278-284 (417)
9 d1kqfb2 f.23.22.1 (B:246-290) 3.4 3.8E+02 0.028 14.1 3.0 17 44-60 8-24 (45)
10 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.3 8.1E+02 0.059 17.8 5.5 62 51-116 5-66 (248)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.94 E-value=35 Score=15.85 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022191 128 IGVVYQMGGVVGEALR 143 (301)
Q Consensus 128 ~G~~l~l~a~~~~a~~ 143 (301)
.|.+.+-+++++||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5788888888988886
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.05 E-value=1.8e+02 Score=21.10 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=22.6
Q ss_pred HHHHHhHHhhcCCcccchhhhHHHHHHHHHH
Q 022191 235 WVVVLFSALLFADTKLTIINLFGYGIAIAGV 265 (301)
Q Consensus 235 v~~~~~~~~~fge~~~t~~~iiG~~lil~g~ 265 (301)
+.+.+.+..+.+.+ ++....+|.++.++..
T Consensus 95 ~~~~~~~l~~~g~~-~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 95 VIGALLAATFRGLT-NDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-hhhhhcccccchhhhh
Confidence 35566778888999 9999988888765433
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.21 E-value=1.4e+02 Score=21.42 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHhHHhhcCCcccchhhhHHHHHHHHHHHHh
Q 022191 235 WVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 268 (301)
Q Consensus 235 v~~~~~~~~~fge~~~t~~~iiG~~lil~g~~~~ 268 (301)
+........++|.+ ++.....+..+.++...-+
T Consensus 77 i~~~~~~m~~~g~~-l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 77 LLGTFAVLAAFGFS-INTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHTTTCC-SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhccc
Confidence 34444456678888 9988888888776655444
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.83 E-value=4.4e+02 Score=20.88 Aligned_cols=121 Identities=9% Similarity=-0.091 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhH------HHHHHHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhheeeee-cc
Q 022191 50 SVIPIGAMFAMTLWLGNTAYLYISVAF------AQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASY-GE 122 (301)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~al~~~~~~~------~~vl~~~~pi~~~~~~~~~~~e~~s~~~~~~~~~~~~Gv~l~~~-~~ 122 (301)
....+..+.-..+.-+|-+-....... .+.+..+.-..+.+....+.++|.+......-. ++|++-... .+
T Consensus 198 ~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~ 275 (383)
T d1u7ga_ 198 MVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACG 275 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTT
T ss_pred hhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCcc
Confidence 344444444445555555443322111 122222223333333334456667665544322 334443332 22
Q ss_pred ccchHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHhHHHHHH
Q 022191 123 ININWIGVVYQMGGVVGEA-LRLIFMEILVKRKGLKLNPISVMYYVSPCSALC 174 (301)
Q Consensus 123 ~~~~~~G~~l~l~a~~~~a-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (301)
.-.++...+...++++..- .+..+.+|+ | -+...+...+-.....++.+.
T Consensus 276 ~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~-iDD~~~~~~vHg~~Gi~G~l~ 326 (383)
T d1u7ga_ 276 YIGVGGALIIGVVAGLAGLWGVTMLKRLL-R-VDDPCDVFGVHGVCGIVGCIM 326 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH-C-SCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHhhccHHHHHHHHHHHhhc-c-cccccceEeehhhhHHHHHHH
Confidence 2223333555555444333 333232222 2 222344445444444544443
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.22 E-value=90 Score=19.76 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhhchhh
Q 022191 257 GYGIAIAGVAAYNNHKLKKE 276 (301)
Q Consensus 257 G~~lil~g~~~~~~~~~~~~ 276 (301)
++.+++.|.+.|...+.|.+
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 33444456666665554433
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.36 E-value=1.3e+02 Score=19.16 Aligned_cols=16 Identities=6% Similarity=-0.052 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhch
Q 022191 259 GIAIAGVAAYNNHKLK 274 (301)
Q Consensus 259 ~lil~g~~~~~~~~~~ 274 (301)
.+.+.|.+.|...+.|
T Consensus 46 ~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 46 TIFVCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3344556666655544
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.29 E-value=69 Score=20.02 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhchhhh
Q 022191 261 AIAGVAAYNNHKLKKEA 277 (301)
Q Consensus 261 il~g~~~~~~~~~~~~~ 277 (301)
.+.|.+.|...|.|+++
T Consensus 31 ~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHHHHHTTTTTTTTST
T ss_pred HHHHHHHhhheeeeccC
Confidence 44566667666655443
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.82 E-value=7e+02 Score=17.95 Aligned_cols=7 Identities=14% Similarity=0.728 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 022191 146 FMEILVK 152 (301)
Q Consensus 146 ~~~~l~~ 152 (301)
...++.+
T Consensus 278 ~~~~l~~ 284 (417)
T d1pv7a_ 278 FAPLIIN 284 (417)
T ss_dssp THHHHHH
T ss_pred hhhhhhc
Confidence 3344444
No 9
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.41 E-value=3.8e+02 Score=14.14 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022191 44 LEIYTTSVIPIGAMFAM 60 (301)
Q Consensus 44 ~~~~~~~~~~~~~~~~~ 60 (301)
||+..+.+...++....
T Consensus 8 WKgv~Kpl~~~~~~~~~ 24 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATF 24 (45)
T ss_dssp HHTTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 55655555555544443
No 10
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=8.1e+02 Score=17.82 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhhe
Q 022191 51 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVV 116 (301)
Q Consensus 51 ~~~~~~~~~~~~~~~~~al~~~~~~~~~vl~~~~pi~~~~~~~~~~~e~~s~~~~~~~~~~~~Gv~ 116 (301)
++..+++.++...+....+..-+... ....-+.+.++.++++.+|.-..|++-=.+++..++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~----a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLF----AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHH----HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHH----HHHHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 34445554444433333333333322 234445566667888888877777765555554444
Done!