BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022192
         (301 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GWB|A Chain A, Crystal Structure Of Peptidase M16 Inactive Domain From
           Pseudomonas Fluorescens. Northeast Structural Genomics
           Target Plr293l
 pdb|3GWB|B Chain B, Crystal Structure Of Peptidase M16 Inactive Domain From
           Pseudomonas Fluorescens. Northeast Structural Genomics
           Target Plr293l
          Length = 434

 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 167 WMIAQSTKVFLNFFVERK----WDLRLLFASGGMPSSHSALCTALTTSVALCHGVA 218
           W  A+  KV    FVE +    +DLRL+FA+G     + A   AL T+  L  GVA
Sbjct: 17  WSTAEGAKVL---FVEARELPXFDLRLIFAAGSSQDGN-APGVALLTNAXLNEGVA 68


>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
           Crispum
 pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
           Crispum
          Length = 714

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 211 VALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKE 270
           +AL +G A     V  G + +V+++A        + AEV++ I  ++ QG P     L  
Sbjct: 254 LALVNGTA-----VGSGMASMVLFEA----NILAVLAEVMSAIFAEVMQGKPEFTDHLTH 304

Query: 271 LLGHTPSQVFAGAML 285
            L H P Q+ A A++
Sbjct: 305 KLKHHPGQIEAAAIM 319


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,803,599
Number of Sequences: 62578
Number of extensions: 273252
Number of successful extensions: 598
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 2
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)