BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022192
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
168) GN=yuiD PE=4 SV=1
Length = 158
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 89/149 (59%), Gaps = 15/149 (10%)
Query: 154 LAANPTFVSGLFAWMIAQSTKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALTTSVAL 213
L N +S L A + AQ KV + F V RK D L+ ++GGMPSSHSA TAL+T VAL
Sbjct: 3 LLTNFPLLSSLAAIIFAQVIKVPIQFIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVAL 62
Query: 214 CHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRK------ 267
HG+ SLF V F++I M+DA GVRRHAG QA V+N +V D +++ K
Sbjct: 63 EHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDF--NRFVNEAKDFPKAA 120
Query: 268 -------LKELLGHTPSQVFAGAMLGILV 289
LKELLGH P +VF G + GIL+
Sbjct: 121 EKEKQKKLKELLGHQPIEVFFGGLTGILL 149
>sp|Q28TU1|RS4_JANSC 30S ribosomal protein S4 OS=Jannaschia sp. (strain CCS1) GN=rpsD
PE=3 SV=1
Length = 206
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 34/203 (16%)
Query: 49 GTPSNPQNRQPEYNNNNDTDNHNHKRNFPVNPFCVLFPILQSIKGLASSQTKKWASRLQA 108
G P +P NR+ EY H +R ++ F + Q +KG T+K R+ A
Sbjct: 21 GRPKSPVNRR-EYGPGQ----HGQRRKGKLSDFGLQLRAKQKLKGYYGDLTEKQFRRIYA 75
Query: 109 HSSQLENINVIDQNSNDYLQTGAFGAALLSVTSTAKVKISPFVATLAANPTFVSGLFAWM 168
+ +L TG F LL A V + FV T+ A FV+ +
Sbjct: 76 EAERLRG------------DTGEFLIGLLERRLDAVVYRAKFVPTVFAARQFVN--HGHV 121
Query: 169 IAQSTKVFLNFFVERKWDLRLL---------------FASGGMPSSHSALCTALTTSVAL 213
KV + + ++ D+ + A +P A + +T +
Sbjct: 122 TVNGQKVNIPSYRVKEGDVIAVRDKSKQLAVVLEAVGLAERDVPDYVDADHSKMTATFVR 181
Query: 214 CHGVADSLFPVCLGFSLIVMYDA 236
G++D +PV + +L+V + A
Sbjct: 182 TPGLSDVPYPVVMEPNLVVEFYA 204
>sp|A8MT19|RHN2P_HUMAN Putative rhophilin-2-like protein RHPN2P1 OS=Homo sapiens
GN=RHPN2P1 PE=5 SV=2
Length = 583
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 228 FSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHTPSQVFAGAMLGI 287
F+ +Y IG R+ MQA + + I D FQ LKE HTPS + AML +
Sbjct: 136 FNTGALYTQIGTWRYWQMQAGLQSAI--DAFQRAAGVLNYLKETFTHTPSYDMSPAMLSV 193
Query: 288 LVACFCCQS 296
LV Q+
Sbjct: 194 LVKMMLTQA 202
>sp|Q8BWR8|RHPN2_MOUSE Rhophilin-2 OS=Mus musculus GN=Rhpn2 PE=1 SV=2
Length = 686
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 228 FSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHTPSQVFAGAMLGI 287
F++ +Y IG R + QA + + + D FQ LKE HTPS + AML +
Sbjct: 221 FNIGALYTQIGTRCNRQTQAGLESAV--DAFQRAAGVLNYLKETFTHTPSYDMSPAMLSV 278
Query: 288 LVACFCCQS 296
LV Q+
Sbjct: 279 LVKMMLAQA 287
>sp|A4FUC9|RHPN2_BOVIN Rhophilin-2 OS=Bos taurus GN=RHPN2 PE=2 SV=1
Length = 686
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 228 FSLIVMYDAIGVR----RHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHTPSQVFAGA 283
F++ +Y IG R AG+++ V D FQ LKE HTPS + A
Sbjct: 221 FNIGALYTQIGTRCNRQTEAGLESTV------DAFQRAAGVLNYLKETFTHTPSYDMSPA 274
Query: 284 MLGILVACFCCQS 296
ML +LV Q+
Sbjct: 275 MLSVLVKMMLAQA 287
>sp|Q8HXG3|RHPN2_CANFA Rhophilin-2 OS=Canis familiaris GN=RHPN2 PE=2 SV=1
Length = 686
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 228 FSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHTPSQVFAGAMLGI 287
F++ +Y IG R + QA + + D FQ LKE HTPS + AML +
Sbjct: 221 FNIGALYTQIGTRCNRRTQAGLDGAV--DAFQRAAGVLHHLKETFTHTPSYDMSPAMLSV 278
Query: 288 LVACFCCQS 296
LV Q+
Sbjct: 279 LVKMMLAQA 287
>sp|P07218|PAL1_PHAVU Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus
vulgaris PE=2 SV=2
Length = 506
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 211 VALCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKE 270
+AL +G A V G + IV++DA + +EVL+ I ++ QG P L
Sbjct: 46 LALVNGTA-----VGSGMASIVLFDA----NILAVLSEVLSAIFAEVMQGKPEFTDHLTH 96
Query: 271 LLGHTPSQVFAGAML 285
L H P Q+ A A++
Sbjct: 97 KLKHHPGQIEAAAIM 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,208,644
Number of Sequences: 539616
Number of extensions: 4153166
Number of successful extensions: 38568
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 35845
Number of HSP's gapped (non-prelim): 2486
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)