Query 022192
Match_columns 301
No_of_seqs 169 out of 514
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d2ta_ a.111.1.1 (A:) Bacteri 98.7 1.7E-08 1.2E-12 88.2 8.4 87 171-293 106-202 (224)
2 d1vnsa_ a.111.1.3 (A:) Chlorop 65.0 6.1 0.00045 37.3 7.1 24 195-218 396-419 (574)
3 d1sh0a_ e.8.1.4 (A:) Viral RNA 16.6 17 0.0012 33.2 0.6 13 193-205 290-302 (502)
4 d1ra6a_ e.8.1.4 (A:) Viral RNA 14.4 19 0.0014 32.4 0.4 13 193-205 283-295 (461)
5 d1v54d_ f.23.1.1 (D:) Mitochon 14.4 52 0.0038 26.0 3.0 20 277-296 76-95 (144)
6 d1khva_ e.8.1.4 (A:) Viral RNA 12.1 27 0.002 31.6 0.6 15 192-206 298-312 (497)
7 d1u09a_ e.8.1.4 (A:) Viral RNA 11.7 26 0.0019 31.7 0.4 14 192-205 292-305 (476)
8 d1oxwa_ c.19.1.3 (A:) Patatin 11.2 28 0.002 28.7 0.3 55 233-294 9-63 (360)
9 d1xr7a_ e.8.1.4 (A:) Viral RNA 10.4 31 0.0022 31.0 0.4 13 193-205 282-294 (460)
10 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 9.3 78 0.0057 21.7 2.2 7 193-199 78-84 (84)
No 1
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
Probab=98.69 E-value=1.7e-08 Score=88.17 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=60.6
Q ss_pred HHhhhhhhhhccCc------cchh---hhhccCCcCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccchhh
Q 022192 171 QSTKVFLNFFVERK------WDLR---LLFASGGMPSSHSALCTALTTSVALCHGVADSLFPVCLGFSLIVMYDAIGVRR 241 (301)
Q Consensus 171 QllK~lI~~lr~rk------~d~~---~~~~sGGMPSSHSA~V~ALATaIgL~~G~~S~iFalA~vfA~IVmYDA~GVRR 241 (301)
...|..++|-|+-. ..+. ..-.+++|||+|++..+++|+.++....... ...+.+|..|.++
T Consensus 106 ~~~K~~~~R~RP~~~~~~~~~~~~~~~~~~~~~SfPSGHa~~a~~~a~~la~~~p~~~---~~~~~~a~~~~~S------ 176 (224)
T d1d2ta_ 106 RSAKDHYMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSGHTSIGWATALVLAEINPQRQ---NEILKRGYELGQS------ 176 (224)
T ss_dssp HHHHHHHCCCCHHHHHTCCCSCC--CCCCCSSCCSSCHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHH------
T ss_pred HHHHHHHcCCChhhhcCcCCCCccccccCCCCCCcCchhHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhhH------
Confidence 45688888776521 1111 1223679999999999999998887765422 2234566666553
Q ss_pred hhhhhHHHHHHHHHhhhcCCCCcccchhhhCC-CChhHHHHHHHHHHHHHHHH
Q 022192 242 HAGMQAEVLNMIVEDLFQGHPISQRKLKELLG-HTPSQVFAGAMLGILVACFC 293 (301)
Q Consensus 242 ~aGkQA~vLN~L~~~~~~~~~~~~~~LKE~LG-HTP~EVlaGALLGIlVAli~ 293 (301)
|.+.| |+|+||++|.++|..++..+
T Consensus 177 ---------------------------Rv~~g~H~~sDv~aG~~lG~ai~a~l 202 (224)
T d1d2ta_ 177 ---------------------------RVICGYHWQSDVDAARVVGSAVVATL 202 (224)
T ss_dssp ---------------------------HHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHcccccHHHHHHHHHHHHHHHHHH
Confidence 88999 99999999999998765433
No 2
>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis [TaxId: 38902]}
Probab=65.03 E-value=6.1 Score=37.32 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=22.0
Q ss_pred CcCChhHHHHHHHHHHHHHHhccC
Q 022192 195 GMPSSHSALCTALTTSVALCHGVA 218 (301)
Q Consensus 195 GMPSSHSA~V~ALATaIgL~~G~~ 218 (301)
+.||+||++..|.|..+....|-+
T Consensus 396 eY~SGHStfS~AaA~VL~~~fG~d 419 (574)
T d1vnsa_ 396 AYPSGHATFGGAVFQMVRRYYNGR 419 (574)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHBTT
T ss_pred CCCchhHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999998853
No 3
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId: 11983]}
Probab=16.57 E-value=17 Score=33.19 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=11.5
Q ss_pred cCCcCChhHHHHH
Q 022192 193 SGGMPSSHSALCT 205 (301)
Q Consensus 193 sGGMPSSHSA~V~ 205 (301)
.|||||+|..|+.
T Consensus 290 ~gGlPSG~p~Tsi 302 (502)
T d1sh0a_ 290 NEGLPSGVPCTSQ 302 (502)
T ss_dssp CSSCCTTSTTHHH
T ss_pred eCCCCCCCceeee
Confidence 7899999998875
No 4
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=14.43 E-value=19 Score=32.36 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=10.8
Q ss_pred cCCcCChhHHHHH
Q 022192 193 SGGMPSSHSALCT 205 (301)
Q Consensus 193 sGGMPSSHSA~V~ 205 (301)
.|||||+|..|+.
T Consensus 283 ~~GlPSG~~~T~i 295 (461)
T d1ra6a_ 283 KGGMPSGCSGTSI 295 (461)
T ss_dssp ESCCCTBSTTHHH
T ss_pred CCCCCCCCCeeEe
Confidence 7899999977665
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.42 E-value=52 Score=25.99 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022192 277 SQVFAGAMLGILVACFCCQS 296 (301)
Q Consensus 277 ~EVlaGALLGIlVAli~~~~ 296 (301)
.-|++|+++|+.++++++.+
T Consensus 76 K~v~g~~~~~i~~s~~i~~~ 95 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLLIW 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56999999999998877754
No 6
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=12.09 E-value=27 Score=31.63 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.7
Q ss_pred ccCCcCChhHHHHHH
Q 022192 192 ASGGMPSSHSALCTA 206 (301)
Q Consensus 192 ~sGGMPSSHSA~V~A 206 (301)
..|||||++++|+.-
T Consensus 298 v~gG~PSG~p~Tsi~ 312 (497)
T d1khva_ 298 TKRGLPSGMPFTSVI 312 (497)
T ss_dssp CSSCCCTTSTTHHHH
T ss_pred EeCCCCCCCceeehh
Confidence 489999999998764
No 7
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=11.72 E-value=26 Score=31.65 Aligned_cols=14 Identities=50% Similarity=0.703 Sum_probs=11.9
Q ss_pred ccCCcCChhHHHHH
Q 022192 192 ASGGMPSSHSALCT 205 (301)
Q Consensus 192 ~sGGMPSSHSA~V~ 205 (301)
..|||||+|..|+.
T Consensus 292 v~~GlPSG~~~T~i 305 (476)
T d1u09a_ 292 VEGGMPSGCSATSI 305 (476)
T ss_dssp EESSCCTTCTTHHH
T ss_pred EeCCcCCCCceeee
Confidence 37899999998876
No 8
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]}
Probab=11.19 E-value=28 Score=28.65 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=32.0
Q ss_pred hhcccchhhhhhhhHHHHHHHHHhhhcCCCCcccchhhhCCCChhHHHHHHHHHHHHHHHHH
Q 022192 233 MYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHTPSQVFAGAMLGILVACFCC 294 (301)
Q Consensus 233 mYDA~GVRR~aGkQA~vLN~L~~~~~~~~~~~~~~LKE~LGHTP~EVlaGALLGIlVAli~~ 294 (301)
+.|-=|+|=.. |+.+|++|.++..+....+..++ +-..|+++|.=.|.++|..+.
T Consensus 9 sldGGG~rG~~--~~~vL~~L~~~~~~~~~~~~~~~-----~d~fD~i~GTS~Gaiia~~la 63 (360)
T d1oxwa_ 9 SIDGGGIRGII--PATILEFLEGQLQEMDNNADARL-----ADYFDVIGGTSTGGLLTAMIS 63 (360)
T ss_dssp EECCCGGGGHH--HHHHHHHHHHHHHHHTTCTTCCH-----HHHCSEEEECTHHHHHHHHHH
T ss_pred EECCCHHHHHH--HHHHHHHHHHcCCcccccCCCCh-----hhhCCEEEEecHHHHHHHHHH
Confidence 34556777554 88899998776532111111111 123467888888877776543
No 9
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16, HRV-16 [TaxId: 31708]}
Probab=10.45 E-value=31 Score=31.04 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=11.2
Q ss_pred cCCcCChhHHHHH
Q 022192 193 SGGMPSSHSALCT 205 (301)
Q Consensus 193 sGGMPSSHSA~V~ 205 (301)
.|||||+|..|+.
T Consensus 282 ~gGlPSG~p~T~i 294 (460)
T d1xr7a_ 282 EGGVPSGCSGTSI 294 (460)
T ss_dssp ESSCCTTSTTHHH
T ss_pred eccccCCCceeEe
Confidence 7899999998764
No 10
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.27 E-value=78 Score=21.70 Aligned_cols=7 Identities=57% Similarity=1.284 Sum_probs=5.5
Q ss_pred cCCcCCh
Q 022192 193 SGGMPSS 199 (301)
Q Consensus 193 sGGMPSS 199 (301)
.||||++
T Consensus 78 ~g~~P~g 84 (84)
T d1ud0a_ 78 AGGMPGG 84 (84)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 6789975
Done!