BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022195
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1FXR|B Chain B, Crystal Structure Of The Ferredoxin I From Desulfovibrio
Africanus At 2.3 Angstroms Resolution
pdb|1DAX|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr,
Minimized Average Structure
pdb|1DFD|A Chain A, Oxidised Desulfovibrio Africanus Ferredoxin I, Nmr, 19
Structures
Length = 64
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD 201
+VD++ CI C CV A F MD A VK G S + +E ++D+CPV CIHW D
Sbjct: 4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63
Query: 202 R 202
Sbjct: 64 E 64
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKVLMRGDLR 106
+N+Y LLGVS A+ +EI++A++KL K HPD H L +N AY+VL DLR
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 107 KDYD 110
K YD
Sbjct: 81 KKYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKVLMRGDLR 106
+N+Y LLGVS A+ +EI++A++KL K HPD H L +N AY+VL DLR
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 107 KDYD 110
K YD
Sbjct: 62 KKYD 65
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRK 107
+YY++LGV A+ +EIK+AY +L KKYHPD K E L EAY+VL RK
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 108 DYDASIGQMRFHFGTNASAG 127
YDA +G+ S+G
Sbjct: 68 QYDA--------YGSGPSSG 79
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPD---IAGQKGHEHTLLLNEAYKVLMRGDLR 106
NYYE+LGV A+ ++IK+AYRKL ++HPD ++ + L++EAY+VL R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 107 KDYD 110
YD
Sbjct: 70 SLYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
K+ YY++LGV A +E+K+AYRKL KYHPD +G E +++AY+VL R
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-EKFKQISQAYEVLSDAKKR 62
Query: 107 KDYD 110
+ YD
Sbjct: 63 ELYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
K++YYE+LGVS A +EI++AY++L KYHPD G K E + EAY+VL
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
R YD
Sbjct: 62 RAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
K++YYE+LGVS A +EI++AY++L KYHPD G K E + EAY+VL
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
R YD
Sbjct: 62 RAAYD 66
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 105
K++YYE+LGVS A +EI++AY++L KYHPD G K E + EAY+VL
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 106 RKDYD 110
R YD
Sbjct: 62 RAAYD 66
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 103
A + K+YY +LGV + + IK AYR+L +KYHPD++ + E L EA++VL
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83
Query: 104 DLRKDYD 110
R +YD
Sbjct: 84 QRRAEYD 90
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLRKD 108
+YYE+LGVS A+ +++K+AYR+L K+HPD G + AY VL + RK
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 109 YDASIGQMRFHFGTNASAG 127
YD FG+ S+G
Sbjct: 68 YD--------QFGSGPSSG 78
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 52 YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDYD 110
Y +LGVS A+ +IK+AY+KL +++HPD G E + +++AY++L + R +YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 111 ASIGQMRFHFGTNASAG 127
H+G+ S+G
Sbjct: 80 --------HYGSGPSSG 88
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 51 YYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDY 109
YY++LGV A+ ++IK+A+ KL KYHPD E + EAY+ L + RK+Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 110 DASIGQMRFHFGTNAS 125
D ++G F G S
Sbjct: 69 D-TLGHSAFTSGKGQS 83
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
K+ YY++LGV +A+ E+K+AYRK+ K+HPD G E +++AY+VL R
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKKR 64
Query: 107 KDYD 110
+ YD
Sbjct: 65 QIYD 68
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 103
S+ K+YY ++GV + + IK AYR+L +KYHPD++ + E + EA++VL
Sbjct: 1 GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 60
Query: 104 DLRKDYD 110
R +YD
Sbjct: 61 QRRAEYD 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 106
K+ Y+LLGVS AN QE+K+ YRK KYHPD E ++EA+++L R
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPD-KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 107 KDYD 110
+ YD
Sbjct: 65 EIYD 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLN---EAYKVLMRGDLR 106
+YYE+L V +A+ + IK+AYRKL K+HPD + E EAY+VL R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 107 KDYDASIGQMRFHFGTNASAG 127
YD +G+ S+G
Sbjct: 70 DIYD--------RYGSGPSSG 82
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRK 107
K+YY+ LG++ A+ +EIK AYR+ +YHPD + G E + EAY VL R+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 108 DYD 110
+D
Sbjct: 63 IFD 65
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 80
+ S+K++YY++LGV A QEI +AYRKL ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 80
+ S+K++YY++LGV A QEI +AYRKL ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AG--QKGHEHTLLLNEAYKV 99
KK++Y +LG AN ++K+ Y+KL YHPD AG ++ + + +++A+K+
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74
Query: 100 LMRGDLRKDYD 110
L + +K YD
Sbjct: 75 LGNEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD------IAG--QKGHEHTLLLNEAYKV 99
KK++Y +LG AN ++K+ Y+KL YHPD AG ++ + + +++A+K+
Sbjct: 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKI 68
Query: 100 LMRGDLRKDYD 110
L + +++YD
Sbjct: 69 LGNEETKREYD 79
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 46 SKKKNYYELLGVSV--EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-------LNEA 96
S NY+EL G+ + E +G + +R LQK++HPD L +N+A
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDA 60
Query: 97 YKVLMRGDLRKDYDASI 113
Y+ L R +Y S+
Sbjct: 61 YQTLKDPLRRAEYLLSL 77
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 42 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKV 99
G+ + + Y+LLGV A +IK AY + YHPD + E +++AY V
Sbjct: 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVV 69
Query: 100 LMRGDLRKDYD 110
L LR+ YD
Sbjct: 70 LGSATLRRKYD 80
>pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb
pdb|3BVO|B Chain B, Crystal Structure Of Human Co-Chaperone Protein Hscb
Length = 207
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 27 WGQ-RCSVIRCCNGRAGERASKKKNYYELLGV--SVEANGQEIKEAYRKLQKKYHPDIAG 83
WG R C RA + ++Y+ L S + +++ Y++LQ+ HPD
Sbjct: 20 WGPGREDRFFCPQCRALQAPDPTRDYFSLXDCNRSFRVDTAKLQHRYQQLQRLVHPDFFS 79
Query: 84 QKGH-------EHTLLLNEAYKVLM 101
Q+ +H+ L+N+AYK L+
Sbjct: 80 QRSQTEKDFSEKHSTLVNDAYKTLL 104
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 52 YELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLMRGDL 105
Y +LG+ A +IK++YRKL KYHPD A K E +N A+ +L
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKE----INNAHAILTDATK 75
Query: 106 RKDYD 110
R YD
Sbjct: 76 RNIYD 80
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 66 IKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNAS 125
+++ YR+LQ ++HPD+A Q+G E + LN+AY L + LR+ Q N
Sbjct: 35 LRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTL-KDPLRR------SQYMLKLLRNID 86
Query: 126 AGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI 185
++S E D + + S MD+ G ++ Q + Q+I
Sbjct: 87 LTQEQTS------NEVTTSDPQLLLKVLDIHDELSQ---MDDEAGVKLLEKQNKERIQDI 137
Query: 186 EVSVDSC 192
E + C
Sbjct: 138 EAQLGQC 144
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 66 IKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNAS 125
+++ YR+LQ ++HPD+A Q+G E + LN+AY L + LR+ Q N
Sbjct: 27 LRKEYRQLQAQHHPDMA-QQGSEQSSTLNQAYHTL-KDPLRR------SQYMLKLLRNID 78
Query: 126 AGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI 185
++S E D + + S MD+ G ++ Q + Q+I
Sbjct: 79 LTQEQTS------NEVTTSDPQLLLKVLDIHDELSQ---MDDEAGVKLLEKQNKERIQDI 129
Query: 186 EVSVDSC 192
E + C
Sbjct: 130 EAQLGQC 136
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNEAYKVLMR 102
+YYE+L V A+ +IK+AYR+ ++HPD A +K E + EAY+VL
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKE----VAEAYEVLSD 58
Query: 103 GDLRKDYD 110
R+ YD
Sbjct: 59 KHKREIYD 66
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL 91
R K+ +++LGV A+ E+ +AYRKL HPD G E
Sbjct: 22 RIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAF 69
>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
And Docking Simulation
Length = 59
Score = 32.3 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSD-QNIEVSVDSCPVNCI 197
+ +D CIGC CV F M + G + V DS + + ++D+CPV I
Sbjct: 2 IVIDHEECIGCESCVELCPEVFAMID--GEEKAMVTAPDSTAECAQDAIDACPVEAI 56
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 49 KNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVL 100
+N Y++L V+ E + Q++ +AYR L +K+HPD K E LL E ++V+
Sbjct: 15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRV--KNKEEKLLAEERFRVI 65
>pdb|1F2G|A Chain A, The Nmr Solution Structure Of The 3fe Ferredoxin Ii From
Desulfovibrio Gigas, 15 Structures
Length = 58
Score = 30.8 bits (68), Expect = 0.95, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 149 CIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQN-IEVSVDSCPVNCI 197
C+ C CV + F M+E + V DSD + +E ++DSCP I
Sbjct: 8 CMACEACVEICPDVFEMNEEGD--KAVVINPDSDLDCVEEAIDSCPAEAI 55
>pdb|3OIX|A Chain A, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|B Chain B, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|C Chain C, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
pdb|3OIX|D Chain D, Crystal Structure Of The Putative Dihydroorotate
Dehydrogenase From Streptococcus Mutans
Length = 345
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 194 VNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERP---ANVFMAAKAFNKQLQQQAAG 250
VNCI+ + L + + + PK G+G GG + +P ANV K N +Q G
Sbjct: 224 VNCINSIGNG-LVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTG 282
Query: 251 G 251
G
Sbjct: 283 G 283
>pdb|2Z8Q|A Chain A, Ferredoxin From Pyrococcus Furiosus, D14c Variant
pdb|2Z8Q|B Chain B, Ferredoxin From Pyrococcus Furiosus, D14c Variant
pdb|3PNI|A Chain A, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
Ferredoxin
pdb|3PNI|B Chain B, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
Ferredoxin
pdb|4DHV|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
D14c Variant Containing The Heterometallic [agfe3s4]
Cluster
pdb|4DHV|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
D14c Variant Containing The Heterometallic [agfe3s4]
Cluster
Length = 66
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 144 VDENACIGCRECVHHASNTFVM-DEATGCARVKVQYGDSDQNI-EVSVDSCPVNCI 197
VD++ CIGC C + F M DE +V+V + N + ++++CPV+ I
Sbjct: 6 VDQDTCIGCAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 193 PVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGS 252
P + ++ E L V E I P+ +GYG G E P +V + Q + +AAG
Sbjct: 571 PEQTLPTLEYEALDVNEMEIAPR-YRGYGAKGNYIENPLSVKRQEEIDKIQSELEAAGKD 629
Query: 253 NPRTAQSTADKETPAQAEAR 272
++ E PA+ +AR
Sbjct: 630 RHAIQEALMPYELPAKYKAR 649
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 50 NYYELLGVSV--EANGQEIKEAYRKLQKKYHPD--IAGQKGH-----EHTLLLNEAYKVL 100
+Y+ L G+ + + Q + ++ LQ++YHPD +G + + + +N+A++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 101 MRGDLRKDYDASI 113
+R +Y S+
Sbjct: 62 RHPLMRAEYLLSL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,415,134
Number of Sequences: 62578
Number of extensions: 377778
Number of successful extensions: 887
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 43
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)