Query 022195
Match_columns 301
No_of_seqs 283 out of 2063
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 2.1E-41 4.6E-46 319.7 10.7 207 46-254 1-268 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 4.6E-35 1E-39 284.6 8.6 208 43-254 22-278 (421)
3 PRK14296 chaperone protein Dna 100.0 1.1E-34 2.4E-39 278.7 9.6 207 48-254 3-278 (372)
4 PRK14298 chaperone protein Dna 100.0 5.1E-34 1.1E-38 274.5 9.0 207 48-254 4-269 (377)
5 PRK14288 chaperone protein Dna 100.0 7.5E-34 1.6E-38 272.7 8.1 203 48-254 2-262 (369)
6 PRK14282 chaperone protein Dna 100.0 2E-33 4.3E-38 269.9 10.3 208 47-254 2-280 (369)
7 PRK14287 chaperone protein Dna 100.0 4.2E-33 9.1E-38 267.8 8.9 207 48-254 3-266 (371)
8 KOG0712 Molecular chaperone (D 100.0 1.7E-32 3.7E-37 256.1 10.4 206 47-254 2-256 (337)
9 PRK14276 chaperone protein Dna 100.0 1.2E-32 2.6E-37 265.4 9.7 207 48-254 3-274 (380)
10 PRK14278 chaperone protein Dna 100.0 1.9E-32 4E-37 263.9 10.6 206 49-254 3-267 (378)
11 PRK14280 chaperone protein Dna 100.0 1.2E-32 2.7E-37 265.0 8.8 207 48-254 3-271 (376)
12 PRK14297 chaperone protein Dna 100.0 3.1E-32 6.8E-37 262.6 9.8 207 48-254 3-276 (380)
13 PRK14279 chaperone protein Dna 100.0 4.3E-32 9.3E-37 262.4 10.4 203 48-254 8-297 (392)
14 PRK14291 chaperone protein Dna 100.0 9.1E-32 2E-36 259.5 10.6 203 48-254 2-279 (382)
15 PRK14277 chaperone protein Dna 100.0 8.2E-32 1.8E-36 260.1 9.9 207 48-254 4-283 (386)
16 PRK14286 chaperone protein Dna 100.0 6E-32 1.3E-36 259.8 8.3 203 48-254 3-274 (372)
17 PRK14285 chaperone protein Dna 100.0 7.4E-32 1.6E-36 258.6 8.6 203 48-254 2-270 (365)
18 PRK14294 chaperone protein Dna 100.0 1.7E-31 3.7E-36 256.3 10.1 204 47-254 2-268 (366)
19 PRK14284 chaperone protein Dna 100.0 1.5E-31 3.3E-36 258.6 9.7 202 49-254 1-282 (391)
20 TIGR02349 DnaJ_bact chaperone 100.0 2.9E-31 6.3E-36 253.7 9.9 205 50-254 1-271 (354)
21 PRK14283 chaperone protein Dna 100.0 3.2E-31 6.9E-36 255.4 10.2 208 47-254 3-274 (378)
22 PRK14290 chaperone protein Dna 100.0 2.6E-31 5.7E-36 254.9 8.8 206 49-254 3-274 (365)
23 PRK14301 chaperone protein Dna 100.0 4E-31 8.7E-36 254.2 10.1 203 48-254 3-268 (373)
24 PRK10767 chaperone protein Dna 100.0 3.8E-31 8.2E-36 254.4 8.7 203 48-254 3-266 (371)
25 PRK14281 chaperone protein Dna 100.0 5.9E-31 1.3E-35 254.9 8.8 206 49-254 3-290 (397)
26 PRK14295 chaperone protein Dna 100.0 1E-30 2.3E-35 252.5 10.0 204 47-254 7-290 (389)
27 PRK14289 chaperone protein Dna 100.0 3.4E-30 7.4E-35 248.9 11.2 207 48-254 4-282 (386)
28 PRK14292 chaperone protein Dna 100.0 9E-30 2E-34 244.8 11.1 206 49-254 2-266 (371)
29 PRK14293 chaperone protein Dna 100.0 9.2E-30 2E-34 245.0 10.1 207 48-254 2-271 (374)
30 PRK14300 chaperone protein Dna 100.0 6.6E-30 1.4E-34 245.8 9.1 202 49-254 3-269 (372)
31 KOG0713 Molecular chaperone (D 99.9 1.6E-26 3.5E-31 213.9 7.6 206 44-254 11-255 (336)
32 KOG0715 Molecular chaperone (D 99.9 8E-26 1.7E-30 210.1 7.5 215 35-254 29-280 (288)
33 PRK14299 chaperone protein Dna 99.9 1.8E-23 4E-28 195.0 5.1 193 48-254 3-205 (291)
34 PRK10266 curved DNA-binding pr 99.9 1.1E-22 2.4E-27 191.0 5.9 67 48-114 3-70 (306)
35 KOG0716 Molecular chaperone (D 99.7 8.4E-19 1.8E-23 158.2 5.5 74 43-116 25-100 (279)
36 PF00226 DnaJ: DnaJ domain; I 99.7 1.4E-17 3E-22 120.8 3.6 61 50-110 1-64 (64)
37 KOG0717 Molecular chaperone (D 99.7 1.4E-17 2.9E-22 159.4 3.7 74 45-118 4-80 (508)
38 KOG0691 Molecular chaperone (D 99.7 4.1E-17 8.9E-22 151.3 4.1 69 48-116 4-74 (296)
39 PTZ00341 Ring-infected erythro 99.6 2.3E-16 4.9E-21 162.6 6.4 74 43-116 567-641 (1136)
40 KOG0718 Molecular chaperone (D 99.6 1.9E-16 4E-21 151.8 4.5 72 45-116 5-81 (546)
41 KOG0719 Molecular chaperone (D 99.6 3.4E-16 7.3E-21 138.5 3.8 70 47-116 12-85 (264)
42 smart00271 DnaJ DnaJ molecular 99.6 1.2E-15 2.6E-20 108.9 5.8 57 49-105 1-60 (60)
43 cd06257 DnaJ DnaJ domain or J- 99.6 2.1E-15 4.5E-20 105.7 5.2 53 50-102 1-55 (55)
44 PHA03102 Small T antigen; Revi 99.6 6.8E-16 1.5E-20 130.6 3.0 66 49-116 5-72 (153)
45 KOG0721 Molecular chaperone (D 99.6 2.3E-15 5E-20 132.0 5.4 75 43-117 93-169 (230)
46 COG2214 CbpA DnaJ-class molecu 99.5 1E-14 2.2E-19 127.8 5.0 68 46-113 3-73 (237)
47 KOG0624 dsRNA-activated protei 99.5 3.8E-14 8.2E-19 132.4 5.9 71 45-115 390-465 (504)
48 TIGR03835 termin_org_DnaJ term 99.5 2.7E-14 5.8E-19 144.6 5.0 66 49-114 2-68 (871)
49 PRK05014 hscB co-chaperone Hsc 99.4 1.4E-13 3.1E-18 119.1 5.3 65 49-113 1-74 (171)
50 PRK01356 hscB co-chaperone Hsc 99.4 2.1E-13 4.6E-18 117.4 4.4 65 49-113 2-73 (166)
51 PRK00294 hscB co-chaperone Hsc 99.4 7.5E-13 1.6E-17 114.6 5.7 69 46-114 1-78 (173)
52 PRK03578 hscB co-chaperone Hsc 99.3 1E-12 2.2E-17 114.2 5.7 67 48-114 5-80 (176)
53 PTZ00100 DnaJ chaperone protei 99.3 1.1E-12 2.4E-17 105.8 5.2 57 43-101 59-115 (116)
54 KOG0720 Molecular chaperone (D 99.3 5.3E-13 1.1E-17 128.2 3.7 74 43-116 229-303 (490)
55 KOG0722 Molecular chaperone (D 99.3 1.3E-12 2.8E-17 117.2 2.2 71 46-116 30-101 (329)
56 KOG0714 Molecular chaperone (D 99.3 2.1E-12 4.6E-17 118.2 3.5 67 48-114 2-71 (306)
57 KOG0550 Molecular chaperone (D 99.2 3.9E-12 8.4E-17 121.2 3.3 72 43-114 367-441 (486)
58 PRK09430 djlA Dna-J like membr 99.2 1.7E-11 3.7E-16 113.2 5.5 57 46-102 197-262 (267)
59 PHA02624 large T antigen; Prov 99.1 2.8E-11 6.1E-16 121.4 4.5 60 48-109 10-71 (647)
60 COG5407 SEC63 Preprotein trans 99.0 1E-10 2.2E-15 112.2 2.8 73 45-117 94-173 (610)
61 PRK01773 hscB co-chaperone Hsc 99.0 3E-10 6.5E-15 98.4 4.8 66 49-114 2-76 (173)
62 TIGR00714 hscB Fe-S protein as 98.9 2.7E-09 5.8E-14 91.2 4.8 54 61-114 3-63 (157)
63 KOG1150 Predicted molecular ch 98.8 4.4E-09 9.6E-14 91.5 3.9 65 44-108 48-115 (250)
64 COG5269 ZUO1 Ribosome-associat 98.6 1.8E-08 4E-13 91.5 2.0 73 41-113 35-114 (379)
65 KOG1789 Endocytosis protein RM 98.3 5.6E-07 1.2E-11 94.0 5.4 60 42-102 1274-1337(2235)
66 KOG0568 Molecular chaperone (D 98.2 1.4E-06 3.1E-11 77.7 5.0 57 46-102 44-102 (342)
67 KOG0723 Molecular chaperone (D 98.1 4.9E-06 1.1E-10 65.6 4.9 59 43-103 50-108 (112)
68 PF13459 Fer4_15: 4Fe-4S singl 97.9 2.8E-06 6.2E-11 61.7 1.0 57 142-199 1-65 (65)
69 PF13370 Fer4_13: 4Fe-4S singl 97.9 9.4E-07 2E-11 63.0 -2.4 55 144-198 1-57 (58)
70 COG1141 Fer Ferredoxin [Energy 97.9 3.3E-06 7.2E-11 61.9 0.4 58 142-200 3-67 (68)
71 KOG3192 Mitochondrial J-type c 97.2 0.00024 5.3E-09 59.9 2.5 69 45-113 4-81 (168)
72 COG1076 DjlA DnaJ-domain-conta 96.0 0.0027 5.9E-08 55.1 1.4 52 49-100 113-173 (174)
73 TIGR03835 termin_org_DnaJ term 95.0 0.0052 1.1E-07 63.8 -0.6 55 200-254 691-750 (871)
74 COG1076 DjlA DnaJ-domain-conta 94.9 0.01 2.2E-07 51.4 1.1 64 50-113 2-74 (174)
75 PF00684 DnaJ_CXXCXGXG: DnaJ c 94.9 0.03 6.4E-07 40.7 3.3 39 158-196 13-51 (66)
76 PRK14300 chaperone protein Dna 94.7 0.065 1.4E-06 52.0 6.2 33 206-238 292-331 (372)
77 KOG0431 Auxilin-like protein a 94.7 0.036 7.8E-07 55.1 4.2 42 59-100 398-448 (453)
78 PRK14284 chaperone protein Dna 94.6 0.069 1.5E-06 52.2 6.1 33 206-238 306-345 (391)
79 PRK14285 chaperone protein Dna 94.5 0.082 1.8E-06 51.2 6.3 32 206-237 293-331 (365)
80 PRK14295 chaperone protein Dna 94.5 0.081 1.8E-06 51.6 6.1 32 206-237 313-350 (389)
81 PRK14282 chaperone protein Dna 94.4 0.1 2.2E-06 50.6 6.5 34 205-238 302-342 (369)
82 PRK14278 chaperone protein Dna 94.3 0.095 2.1E-06 51.0 6.3 32 206-237 290-328 (378)
83 PRK14291 chaperone protein Dna 94.2 0.099 2.1E-06 50.9 6.2 36 204-239 300-342 (382)
84 PRK14301 chaperone protein Dna 93.9 0.11 2.5E-06 50.3 5.8 32 208-239 292-330 (373)
85 PRK14290 chaperone protein Dna 93.8 0.13 2.9E-06 49.7 6.1 33 206-238 296-335 (365)
86 COG0484 DnaJ DnaJ-class molecu 93.7 0.15 3.2E-06 49.4 6.0 31 208-238 292-329 (371)
87 PRK14298 chaperone protein Dna 93.7 0.14 3.1E-06 49.7 6.1 30 208-237 293-329 (377)
88 PRK14281 chaperone protein Dna 93.7 0.14 2.9E-06 50.2 5.9 31 208-238 314-351 (397)
89 PRK14286 chaperone protein Dna 93.5 0.16 3.4E-06 49.4 6.0 32 206-237 297-335 (372)
90 PF03656 Pam16: Pam16; InterP 93.3 0.14 3.1E-06 42.2 4.6 57 45-103 54-110 (127)
91 PRK14279 chaperone protein Dna 93.1 0.19 4.2E-06 49.1 5.9 31 207-237 320-356 (392)
92 PRK14294 chaperone protein Dna 93.0 0.22 4.7E-06 48.2 6.2 32 208-239 292-330 (366)
93 PRK14288 chaperone protein Dna 92.9 0.26 5.6E-06 47.8 6.5 33 206-238 285-324 (369)
94 PRK14280 chaperone protein Dna 92.8 0.22 4.7E-06 48.4 5.9 31 207-237 294-331 (376)
95 PRK14297 chaperone protein Dna 92.8 0.21 4.5E-06 48.6 5.8 31 207-237 299-336 (380)
96 PRK14289 chaperone protein Dna 92.7 0.22 4.7E-06 48.6 5.7 32 207-238 305-343 (386)
97 PRK14276 chaperone protein Dna 92.7 0.24 5.2E-06 48.2 6.0 32 207-238 297-335 (380)
98 PRK10767 chaperone protein Dna 92.6 0.25 5.4E-06 47.9 5.9 32 207-238 289-327 (371)
99 PRK14277 chaperone protein Dna 92.5 0.26 5.7E-06 48.0 6.0 30 208-237 307-343 (386)
100 TIGR02349 DnaJ_bact chaperone 92.4 0.29 6.3E-06 47.1 6.1 32 207-238 294-332 (354)
101 PRK14287 chaperone protein Dna 91.8 0.35 7.6E-06 46.9 5.9 31 207-237 289-326 (371)
102 PLN03165 chaperone protein dna 91.7 0.21 4.6E-06 40.2 3.5 43 149-194 41-83 (111)
103 PRK14283 chaperone protein Dna 91.5 0.45 9.9E-06 46.2 6.3 32 207-238 297-335 (378)
104 PRK14296 chaperone protein Dna 91.5 0.42 9.2E-06 46.4 6.1 31 208-238 302-340 (372)
105 PF12797 Fer4_2: 4Fe-4S bindin 90.1 0.081 1.7E-06 30.2 -0.2 18 142-159 3-20 (22)
106 TIGR02642 phage_xxxx uncharact 89.8 0.27 5.9E-06 43.2 2.8 53 160-227 99-151 (186)
107 PTZ00037 DnaJ_C chaperone prot 89.6 0.85 1.8E-05 45.1 6.4 32 206-237 301-342 (421)
108 PRK14293 chaperone protein Dna 89.3 0.82 1.8E-05 44.4 6.0 30 208-237 295-332 (374)
109 PF06902 Fer4_19: Divergent 4F 88.3 0.14 3E-06 37.2 -0.1 54 141-198 7-60 (64)
110 PRK14292 chaperone protein Dna 87.8 1.2 2.6E-05 43.1 6.1 32 208-239 290-328 (371)
111 PF13446 RPT: A repeated domai 85.2 1.9 4.1E-05 30.6 4.5 45 49-102 5-49 (62)
112 KOG0724 Zuotin and related mol 80.8 1.6 3.5E-05 41.4 3.4 54 60-113 3-62 (335)
113 PF11833 DUF3353: Protein of u 80.3 3.3 7.2E-05 36.6 5.0 38 58-101 1-38 (194)
114 COG0437 HybA Fe-S-cluster-cont 80.0 0.63 1.4E-05 41.4 0.3 57 142-208 95-164 (203)
115 PF12837 Fer4_6: 4Fe-4S bindin 75.8 0.48 1E-05 27.5 -1.1 19 142-160 2-20 (24)
116 KOG3256 NADH:ubiquinone oxidor 70.7 2.4 5.3E-05 36.5 1.5 61 140-200 104-170 (212)
117 PRK14028 pyruvate ferredoxin o 68.9 20 0.00043 33.7 7.5 24 140-163 240-263 (312)
118 PF14687 DUF4460: Domain of un 66.4 12 0.00027 30.0 4.7 45 60-104 5-55 (112)
119 COG2878 Predicted NADH:ubiquin 65.6 1.3 2.8E-05 38.8 -1.2 63 139-204 107-169 (198)
120 COG3383 Uncharacterized anaero 62.0 6.5 0.00014 41.6 2.9 30 184-213 263-292 (978)
121 PF01556 CTDII: DnaJ C termina 61.2 17 0.00036 27.1 4.3 33 206-238 27-67 (81)
122 PRK13029 2-oxoacid ferredoxin 58.5 7.1 0.00015 43.4 2.6 37 140-176 650-688 (1186)
123 COG1142 HycB Fe-S-cluster-cont 58.1 8.7 0.00019 33.1 2.6 21 140-160 75-95 (165)
124 PF13237 Fer4_10: 4Fe-4S diclu 57.4 7.9 0.00017 26.0 1.8 20 142-161 2-21 (52)
125 PRK09193 indolepyruvate ferred 55.8 8.4 0.00018 42.8 2.6 36 141-176 637-674 (1165)
126 PF04879 Molybdop_Fe4S4: Molyb 53.8 16 0.00036 24.9 3.0 32 184-215 3-34 (55)
127 PRK13030 2-oxoacid ferredoxin 52.8 9.8 0.00021 42.4 2.5 36 141-176 623-660 (1159)
128 PRK09626 oorD 2-oxoglutarate-a 52.6 11 0.00025 29.3 2.3 21 141-161 10-30 (103)
129 COG1144 Pyruvate:ferredoxin ox 52.6 13 0.00028 28.8 2.4 64 138-203 26-89 (91)
130 TIGR02060 aprB adenosine phosp 51.7 14 0.00031 30.5 2.8 61 142-204 3-69 (132)
131 PF00037 Fer4: 4Fe-4S binding 51.1 2.5 5.3E-05 24.3 -1.3 19 143-161 2-20 (24)
132 COG0437 HybA Fe-S-cluster-cont 49.9 9.2 0.0002 34.1 1.5 24 139-162 10-33 (203)
133 PF13187 Fer4_9: 4Fe-4S diclus 49.4 2.8 6E-05 28.5 -1.6 15 148-162 1-15 (55)
134 PF12800 Fer4_4: 4Fe-4S bindin 49.0 12 0.00025 19.7 1.2 15 147-161 2-16 (17)
135 PRK14299 chaperone protein Dna 48.7 20 0.00043 33.5 3.6 31 207-237 228-264 (291)
136 PRK10266 curved DNA-binding pr 47.9 21 0.00045 33.6 3.6 31 207-237 236-271 (306)
137 PF14697 Fer4_21: 4Fe-4S diclu 47.0 7.4 0.00016 27.5 0.3 19 143-161 2-20 (59)
138 COG5552 Uncharacterized conser 46.1 59 0.0013 24.3 4.9 36 48-83 2-37 (88)
139 PRK09625 porD pyruvate flavodo 45.7 5.7 0.00012 32.8 -0.5 24 140-163 52-75 (133)
140 TIGR01582 FDH-beta formate deh 43.7 6.7 0.00015 36.7 -0.4 64 141-204 118-184 (283)
141 COG1146 Ferredoxin [Energy pro 43.4 29 0.00062 24.8 3.0 24 143-166 4-28 (68)
142 PF10041 DUF2277: Uncharacteri 42.8 1.1E+02 0.0024 23.0 5.9 55 48-102 2-61 (78)
143 PRK08348 NADH-plastoquinone ox 42.7 16 0.00035 29.3 1.7 22 141-162 36-57 (120)
144 PRK09623 vorD 2-ketoisovalerat 42.5 26 0.00056 27.5 2.9 21 141-161 45-65 (105)
145 PRK09624 porD pyuvate ferredox 41.1 23 0.00049 28.0 2.3 20 143-162 47-66 (105)
146 PRK13409 putative ATPase RIL; 40.5 14 0.0003 38.2 1.3 20 141-160 43-62 (590)
147 TIGR03149 cyt_nit_nrfC cytochr 39.4 9.6 0.00021 34.3 -0.1 28 141-168 40-67 (225)
148 PRK05113 electron transport co 39.2 16 0.00034 32.1 1.3 21 141-161 108-128 (191)
149 PF07709 SRR: Seven Residue Re 38.0 20 0.00044 17.8 1.0 13 89-101 2-14 (14)
150 TIGR00403 ndhI NADH-plastoquin 37.9 23 0.0005 30.8 2.1 22 141-162 56-77 (183)
151 TIGR03224 benzo_boxA benzoyl-C 37.6 19 0.00042 35.3 1.7 23 141-163 4-26 (411)
152 COG4231 Indolepyruvate ferredo 37.4 21 0.00046 37.0 2.0 28 140-167 570-599 (640)
153 TIGR03048 PS_I_psaC photosyste 37.2 15 0.00032 27.1 0.7 20 142-161 3-22 (80)
154 PRK06991 ferredoxin; Provision 37.2 13 0.00029 34.5 0.5 20 142-161 80-99 (270)
155 CHL00065 psaC photosystem I su 34.8 17 0.00036 26.9 0.6 18 144-161 6-23 (81)
156 PRK00783 DNA-directed RNA poly 34.3 26 0.00055 32.2 1.9 92 141-249 164-257 (263)
157 TIGR03478 DMSO_red_II_bet DMSO 34.2 10 0.00022 36.2 -0.8 48 142-204 157-222 (321)
158 PF12434 Malate_DH: Malate deh 33.0 49 0.0011 19.8 2.2 17 63-79 10-26 (28)
159 PRK10882 hydrogenase 2 protein 32.9 17 0.00036 34.9 0.4 20 142-161 138-157 (328)
160 COG1245 Predicted ATPase, RNas 32.9 15 0.00033 37.0 0.1 18 143-160 46-63 (591)
161 PRK15449 ferredoxin-like prote 32.7 17 0.00036 28.5 0.3 21 140-160 54-74 (95)
162 COG3592 Uncharacterized conser 31.3 10 0.00023 27.8 -0.9 54 141-198 17-70 (74)
163 KOG3442 Uncharacterized conser 31.3 62 0.0013 26.6 3.4 37 48-84 58-94 (132)
164 TIGR02951 DMSO_dmsB DMSO reduc 31.2 19 0.00041 30.3 0.5 20 141-160 3-22 (161)
165 PRK09477 napH quinol dehydroge 30.3 42 0.00092 30.9 2.7 19 144-162 205-223 (271)
166 PLN00071 photosystem I subunit 30.3 24 0.00053 25.9 0.9 19 143-161 5-23 (81)
167 TIGR02179 PorD_KorD 2-oxoacid: 30.2 39 0.00085 24.5 2.0 21 142-162 20-40 (78)
168 PRK05888 NADH dehydrogenase su 30.1 36 0.00079 28.8 2.0 17 146-162 57-73 (164)
169 PRK02651 photosystem I subunit 29.9 31 0.00068 25.3 1.4 16 146-161 8-23 (81)
170 PRK08318 dihydropyrimidine deh 29.9 40 0.00087 33.0 2.5 19 143-161 338-356 (420)
171 TIGR02163 napH_ ferredoxin-typ 28.2 34 0.00073 31.3 1.6 18 145-162 199-216 (255)
172 PRK08493 NADH dehydrogenase su 27.8 33 0.00071 37.0 1.6 54 146-203 203-256 (819)
173 COG1148 HdrA Heterodisulfide r 27.7 52 0.0011 33.5 2.9 32 143-175 221-254 (622)
174 PRK13984 putative oxidoreducta 27.6 25 0.00055 36.0 0.7 20 142-161 40-59 (604)
175 PTZ00305 NADH:ubiquinone oxido 27.2 1.1E+02 0.0025 28.8 4.9 62 142-204 207-277 (297)
176 TIGR00402 napF ferredoxin-type 26.8 93 0.002 24.1 3.7 19 144-162 31-49 (101)
177 PRK07569 bidirectional hydroge 26.7 29 0.00062 31.3 0.8 22 140-161 139-160 (234)
178 TIGR01971 NuoI NADH-quinone ox 25.4 52 0.0011 26.1 2.0 15 147-161 43-57 (122)
179 COG2879 Uncharacterized small 24.8 1E+02 0.0023 22.3 3.2 26 69-94 27-52 (65)
180 TIGR01944 rnfB electron transp 23.6 39 0.00083 28.8 1.0 21 141-161 107-127 (165)
181 PF04502 DUF572: Family of unk 22.8 2.4E+02 0.0051 26.8 6.3 32 181-226 72-103 (324)
182 COG1107 Archaea-specific RecJ- 22.8 44 0.00096 34.5 1.4 7 188-194 70-76 (715)
183 PRK08222 hydrogenase 4 subunit 22.5 77 0.0017 27.4 2.7 20 142-161 33-52 (181)
184 TIGR02700 flavo_MJ0208 archaeo 21.8 46 0.001 30.0 1.2 20 142-161 143-162 (234)
185 COG1107 Archaea-specific RecJ- 21.7 51 0.0011 34.1 1.6 46 149-194 53-103 (715)
186 TIGR01973 NuoG NADH-quinone ox 21.3 45 0.00097 34.4 1.1 64 137-200 132-202 (603)
187 PF04246 RseC_MucC: Positive r 21.2 85 0.0018 25.6 2.6 40 186-225 16-61 (135)
188 PRK07860 NADH dehydrogenase su 20.8 91 0.002 33.5 3.3 28 183-210 222-249 (797)
189 TIGR02642 phage_xxxx uncharact 20.3 71 0.0015 28.1 2.0 28 149-176 99-131 (186)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-41 Score=319.67 Aligned_cols=207 Identities=24% Similarity=0.295 Sum_probs=163.0
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-cchHHHHHHHHHHhhhhccccccccccccccccc--ccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG-Q-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG 121 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~ 121 (301)
++.+|||+||||+++||.+|||+|||+||++||||+|+ + +++++|++|++||||||||++|++||+++..... +++
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35789999999999999999999999999999999999 3 4778999999999999999999999999854421 222
Q ss_pred c---c------------CCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCcc------ccc
Q 022195 122 T---N------------ASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASN 161 (301)
Q Consensus 122 ~---~------------~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~ 161 (301)
. + +|+|.+. ..-..+.++.|+..+ ..+-..|..|.++ .+.
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~ 160 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK 160 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence 1 1 1111111 111234456666543 2234556666655 678
Q ss_pred eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-----
Q 022195 162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----- 226 (301)
Q Consensus 162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G----- 226 (301)
+|..|+|.|..+..++. +..+++++|+.|.| .|.|.+.+.+.+.|+|.||+|+.+|++|+..|
T Consensus 161 tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g 238 (371)
T COG0484 161 TCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAG 238 (371)
T ss_pred cCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccC
Confidence 99999999999888877 67788999999998 79999999999999999999999999996444
Q ss_pred --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 --WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 --~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.++|+||.+.+..+..++|..+||+-
T Consensus 239 ~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~ 268 (371)
T COG0484 239 PNGGPAGDLYVFVHVKPHPIFERDGDDLYC 268 (371)
T ss_pred CCCCCCccEEEEEEeecCCCeEECCCceEe
Confidence 4557999999988777777777777775
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=284.59 Aligned_cols=208 Identities=25% Similarity=0.249 Sum_probs=158.8
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccccccccc-cc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH-FG 121 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~-~~ 121 (301)
++.+...|||+||||+++||.+|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||.++.....+ .+
T Consensus 22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~--~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~ 99 (421)
T PTZ00037 22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD--PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQ 99 (421)
T ss_pred cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch--HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCC
Confidence 455557899999999999999999999999999999999864 589999999999999999999999987532110 00
Q ss_pred --------ccCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc-----cceeeeeCCcce
Q 022195 122 --------TNASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-----SNTFVMDEATGC 171 (301)
Q Consensus 122 --------~~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a-----p~tf~~c~g~G~ 171 (301)
..+|++.+ ...++.++.|+.+. ..+-+.|..|.+++ +.+|..|.|.|.
T Consensus 100 ~~d~~d~f~~~Fggg~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 177 (421)
T PTZ00037 100 PADASDLFDLIFGGGR--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGI 177 (421)
T ss_pred CcchhhhHHHhhcccc--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCe
Confidence 01122111 01123345555432 22344566665543 568999999999
Q ss_pred EEEEEeeCCccccccccccCCCc------------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCCCCce
Q 022195 172 ARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANV 233 (301)
Q Consensus 172 ~~v~~q~g~~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~~~~v 233 (301)
...+++.+++.++++.+|+.|.| .|.|.+++.+.+.|+|.||+|+++|++|...| ++.||||
T Consensus 178 ~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDL 257 (421)
T PTZ00037 178 RVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNV 257 (421)
T ss_pred EEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcE
Confidence 88888888888889999999977 58889999999999999999999999996544 3568999
Q ss_pred ehhhHHHHHHHHHHhhCCCCC
Q 022195 234 FMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 234 fv~~~~~~~~~~~~~~~~~~~ 254 (301)
++......+..++|+..||+-
T Consensus 258 iv~I~~~ph~~F~R~G~DL~~ 278 (421)
T PTZ00037 258 VFILNEKPHDTFKREGGDLFI 278 (421)
T ss_pred EEEEEecCCCCcEEeCCeEEE
Confidence 998866666666677777776
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-34 Score=278.71 Aligned_cols=207 Identities=25% Similarity=0.306 Sum_probs=154.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc---c----
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H---- 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~---- 119 (301)
..|||+||||+++||.+|||+|||+||++||||+|+++ ++++|++|++||+||+||.+|+.||+++..... +
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 57999999999999999999999999999999999754 567999999999999999999999998753210 1
Q ss_pred ccc--c--------CCCCc--ccccC--------CCCCCCCccccc-----------------ccccccCCCCCcc----
Q 022195 120 FGT--N--------ASAGF--SRSSW--------KGPPRPEALFVD-----------------ENACIGCRECVHH---- 158 (301)
Q Consensus 120 ~~~--~--------~f~g~--g~~~~--------~gp~r~~difvd-----------------e~~CigC~~C~g~---- 158 (301)
|+. . .+.++ -++.+ ..+.++.|+.+. ..+.+.|..|.++
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 162 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAES 162 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCC
Confidence 110 0 00000 01111 122344455432 2234556666654
Q ss_pred --ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC
Q 022195 159 --ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG 226 (301)
Q Consensus 159 --ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G 226 (301)
.+.+|..|.|.|.....++.|++..+++.+|+.|.| .|.+.+++.+.+.++|.||+|+++|++|...|
T Consensus 163 ~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g 242 (372)
T PRK14296 163 NSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQ 242 (372)
T ss_pred CCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEec
Confidence 356899999999999989999987788999999987 68999999999999999999999999996544
Q ss_pred -------CCCCCceehhhHHHHHHHHHH-hhCCCCC
Q 022195 227 -------WERPANVFMAAKAFNKQLQQQ-AAGGSNP 254 (301)
Q Consensus 227 -------~~~~~~vfv~~~~~~~~~~~~-~~~~~~~ 254 (301)
++.+|||++..+...+..+++ ..+|||-
T Consensus 243 ~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~ 278 (372)
T PRK14296 243 KGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILM 278 (372)
T ss_pred cccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEE
Confidence 245789999986655444444 4567775
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-34 Score=274.50 Aligned_cols=207 Identities=21% Similarity=0.270 Sum_probs=157.3
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-c------
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-H------ 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~------ 119 (301)
..|||+||||+++|+.+|||+|||+||++||||++++. ++++|++|++||++|+||.+|..||+++..... +
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 46999999999999999999999999999999999754 567999999999999999999999998753211 0
Q ss_pred ccc-----------cCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc------cceeee
Q 022195 120 FGT-----------NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVM 165 (301)
Q Consensus 120 ~~~-----------~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf~~ 165 (301)
|+. .+|++.+.....++.++.|+.+. ..+.+.|..|.+.+ +.+|..
T Consensus 84 ~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~ 163 (377)
T PRK14298 84 FRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT 163 (377)
T ss_pred cccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC
Confidence 110 01111100001223455555533 22456677776653 468999
Q ss_pred eCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CC
Q 022195 166 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WE 228 (301)
Q Consensus 166 c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~ 228 (301)
|.|.|.....++.+.+.++++.+|+.|.| .|.|.+.+.+.+.|+|.||||+++|++|...| ++
T Consensus 164 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~ 243 (377)
T PRK14298 164 CGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGA 243 (377)
T ss_pred CCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCC
Confidence 99999888887766677789999999988 68999999999999999999999999996554 24
Q ss_pred CCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 229 RPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 229 ~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.+||||+......+..++++.+||+-
T Consensus 244 ~~GDL~i~i~v~~h~~F~R~G~DL~~ 269 (377)
T PRK14298 244 PSGDLYIVLHVKEHDYFERVGDDIIS 269 (377)
T ss_pred CCcCEEEEEEEecCCCeEEEcCcEEE
Confidence 57899999876666666677777765
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.5e-34 Score=272.72 Aligned_cols=203 Identities=20% Similarity=0.220 Sum_probs=147.3
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccccc-------
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------- 118 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------- 118 (301)
..|||+||||+++||.+|||+|||+||++||||+++. .++++|++|++||+||+||.+|..||+++.....
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 4799999999999999999999999999999999974 3667999999999999999999999998753211
Q ss_pred cccc----------cCCCCccccc-CCCCCCCCccccc-----------------ccccccCCCCCccc-----cceeee
Q 022195 119 HFGT----------NASAGFSRSS-WKGPPRPEALFVD-----------------ENACIGCRECVHHA-----SNTFVM 165 (301)
Q Consensus 119 ~~~~----------~~f~g~g~~~-~~gp~r~~difvd-----------------e~~CigC~~C~g~a-----p~tf~~ 165 (301)
+|.. .+|++.+... -..+.++.++.+. ..+...|..|.+++ +.+|..
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~ 161 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQ 161 (369)
T ss_pred ccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCC
Confidence 1110 0011000000 0112334444432 12344666666543 568999
Q ss_pred eCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCC
Q 022195 166 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WER 229 (301)
Q Consensus 166 c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~ 229 (301)
|.|.|.....+ |.+ +++.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...| ++.
T Consensus 162 C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~ 237 (369)
T PRK14288 162 CNGQGQVFMRQ--GFM--SFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGK 237 (369)
T ss_pred CCCCcEEEEEe--ceE--EEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCC
Confidence 99999755433 433 56679999988 68999999999999999999999999997554 345
Q ss_pred CCceehhhHHHHHHHHHHhhCCCCC
Q 022195 230 PANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 230 ~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+|||++......+..++++.+||+-
T Consensus 238 ~GDL~v~i~v~~h~~f~R~G~DL~~ 262 (369)
T PRK14288 238 RGDLYLEARVKEDEHFKREGCDLFI 262 (369)
T ss_pred CCCEEEEEEEEECCCcEEeCCEEEE
Confidence 7899999876665566666766664
No 6
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-33 Score=269.90 Aligned_cols=208 Identities=21% Similarity=0.168 Sum_probs=155.3
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc-----
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----- 118 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~----- 118 (301)
...|||+||||+++||.+|||+|||+||++||||+++.. +.++|++|++||++|+||.+|..||+++.....
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 357999999999999999999999999999999999743 567999999999999999999999998743211
Q ss_pred -----cc-cc---------------cCCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCcc
Q 022195 119 -----HF-GT---------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH 158 (301)
Q Consensus 119 -----~~-~~---------------~~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~ 158 (301)
+| +. .+|++.+. .....+.++.|+.+. ..+.+.|..|.++
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~ 161 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGT 161 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCcc
Confidence 10 00 00111000 000112344555432 2234556666554
Q ss_pred ------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEE
Q 022195 159 ------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGV 222 (301)
Q Consensus 159 ------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I 222 (301)
.+.+|..|.|.|.....++.++...+.+.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|
T Consensus 162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 241 (369)
T PRK14282 162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL 241 (369)
T ss_pred CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence 356899999999998888888766667889999987 6899999999999999999999999999
Q ss_pred ecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 223 FGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 223 ~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
...| ++.++|||+..+...+..++++.+|++-
T Consensus 242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~ 280 (369)
T PRK14282 242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIY 280 (369)
T ss_pred EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEE
Confidence 6554 2456899999876666666677777765
No 7
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.98 E-value=4.2e-33 Score=267.75 Aligned_cols=207 Identities=20% Similarity=0.238 Sum_probs=153.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cc---c-
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF---G- 121 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~---~- 121 (301)
..|||+||||+++||.+|||+|||+||++||||+|+.+ ++++|++|++||++|+||.+|+.||+++..... ++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 46999999999999999999999999999999999753 557999999999999999999999998753211 11 0
Q ss_pred ----------ccCCCCccc-ccCCCCCCCCccccc-----------------ccccccCCCCCccc------cceeeeeC
Q 022195 122 ----------TNASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVMDE 167 (301)
Q Consensus 122 ----------~~~f~g~g~-~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf~~c~ 167 (301)
..+|++.+. .....+.++.|+.+. ..+-+.|..|.+.+ +.+|..|.
T Consensus 83 ~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~ 162 (371)
T PRK14287 83 GDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG 162 (371)
T ss_pred ccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCC
Confidence 011221110 000123344555433 12334566665543 56899999
Q ss_pred CcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCCC
Q 022195 168 ATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WERP 230 (301)
Q Consensus 168 g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~ 230 (301)
|.|.....++.++...+.+.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...| ++.+
T Consensus 163 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~ 242 (371)
T PRK14287 163 GSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPP 242 (371)
T ss_pred CEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCC
Confidence 999888888887766666889999987 58888998889999999999999999996544 2457
Q ss_pred CceehhhHHHHHHHHHHhhCCCCC
Q 022195 231 ANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 231 ~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
||++|..+...+..++|+.+||+-
T Consensus 243 GDL~v~i~v~~h~~F~R~G~DL~~ 266 (371)
T PRK14287 243 GDLYVVFNVKPHEFFERDGDDIYC 266 (371)
T ss_pred ccEEEEEEEecCCCEEEecCCeEE
Confidence 899998866655556666777765
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-32 Score=256.12 Aligned_cols=206 Identities=24% Similarity=0.315 Sum_probs=154.3
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccccccccc--ccc--
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH--FGT-- 122 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~--~~~-- 122 (301)
.++.||+||||+++||.+|||+|||+||++||||+|++ +.++|++|.+||+|||||++|.+||+++...... ++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 46789999999999999999999999999999999987 6789999999999999999999999998654321 111
Q ss_pred ----cCCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCcccc-----ceeeeeCCcceEEEEE
Q 022195 123 ----NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHAS-----NTFVMDEATGCARVKV 176 (301)
Q Consensus 123 ----~~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~ap-----~tf~~c~g~G~~~v~~ 176 (301)
.+|+ +++...+++.++.++-++ ...-.-|..|.+..+ ..|..|.+.|....++
T Consensus 81 ~~f~~~F~-~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~ 159 (337)
T KOG0712|consen 81 GGFSQFFG-FGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTR 159 (337)
T ss_pred ccHHHhcc-CCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEE
Confidence 1122 222222333334444322 223445555554433 2699999999999999
Q ss_pred eeCC-ccccccccccCCCc------------ceeeceeeccccEEEEEeCCCCCCCcEEe--cCCC----CCCCceehhh
Q 022195 177 QYGD-SDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVF--GGGW----ERPANVFMAA 237 (301)
Q Consensus 177 q~g~-~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~--g~G~----~~~~~vfv~~ 237 (301)
++++ +.++++..|..|.| .|++.+++++.++|+|+|++|++++++|. +.+. --|+|+.+..
T Consensus 160 ~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i 239 (337)
T KOG0712|consen 160 QMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLI 239 (337)
T ss_pred eccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEe
Confidence 9999 99999999999988 69999999999999999999999999994 4442 2366766666
Q ss_pred HHHHHHHHHHhhCCCCC
Q 022195 238 KAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 238 ~~~~~~~~~~~~~~~~~ 254 (301)
...++..+.+..+||..
T Consensus 240 ~~k~h~~F~Rrg~dL~~ 256 (337)
T KOG0712|consen 240 DQKEHPGFDRRGSDLYR 256 (337)
T ss_pred cccccccceecccccce
Confidence 55444444444544444
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.2e-32 Score=265.44 Aligned_cols=207 Identities=24% Similarity=0.276 Sum_probs=154.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cccc---
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGT--- 122 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~~~--- 122 (301)
..|||+||||+++||.+|||+|||+||++||||++++. +.++|++|++||++|+||.+|..||+++..... +++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 47999999999999999999999999999999999754 567999999999999999999999998753211 0000
Q ss_pred -------------------cCCCCccc-ccCCCCCCCCccccc-----------------ccccccCCCCCccc------
Q 022195 123 -------------------NASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------ 159 (301)
Q Consensus 123 -------------------~~f~g~g~-~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------ 159 (301)
.+|++.+. .....+.++.|+.+. ...-+.|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~ 162 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS 162 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence 01111000 000112344555432 12344566666543
Q ss_pred cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC---
Q 022195 160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG--- 226 (301)
Q Consensus 160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G--- 226 (301)
+.+|..|.|.|.....++.++...+.+.+|+.|.| .|.|.+.+.+.+.|+|.||+|+++|++|...|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~ 242 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE 242 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence 56899999999998888887755566889999988 58999999999999999999999999996444
Q ss_pred ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.+|||+|..+...+..++|+.+||+-
T Consensus 243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 274 (380)
T PRK14276 243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYY 274 (380)
T ss_pred CCCCCCCCcCEEEEEEEEECcceeeecceEEE
Confidence 2356899999877666666667777765
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.9e-32 Score=263.86 Aligned_cols=206 Identities=18% Similarity=0.213 Sum_probs=152.9
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc------ccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------HFG 121 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~~~ 121 (301)
.|||+||||+++||.+|||+|||+||++||||++++. ++++|++|++||+||+||.+|..||+++..... +++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 6999999999999999999999999999999999854 457999999999999999999999998743110 111
Q ss_pred ----------ccCCCCcccc-c-CCCCCCCCccccc-----------------ccccccCCCCCcc------ccceeeee
Q 022195 122 ----------TNASAGFSRS-S-WKGPPRPEALFVD-----------------ENACIGCRECVHH------ASNTFVMD 166 (301)
Q Consensus 122 ----------~~~f~g~g~~-~-~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~tf~~c 166 (301)
..+|++.+.+ . ...+.++.|+.+. ...-+.|..|.++ .+.+|..|
T Consensus 83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C 162 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTC 162 (378)
T ss_pred cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCc
Confidence 0112211100 0 0012344555432 1234456666654 35689999
Q ss_pred CCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCC
Q 022195 167 EATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WER 229 (301)
Q Consensus 167 ~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~ 229 (301)
.|.|.....++.++...+.+.+|+.|.| .|.+.+++.+.+.|+|.||||+++|++|...| ++.
T Consensus 163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 242 (378)
T PRK14278 163 GGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP 242 (378)
T ss_pred cCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence 9999888777766655567789999987 68999999999999999999999999997554 245
Q ss_pred CCceehhhHHHHHHHHHHhhCCCCC
Q 022195 230 PANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 230 ~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+|||++..+...+..++|+.+||+-
T Consensus 243 ~GDL~v~i~~~~h~~F~R~G~DL~~ 267 (378)
T PRK14278 243 AGDLYVEVHEQPHDVFVRDGDDLHC 267 (378)
T ss_pred CCCEEEEEEECcCCCEEEcCCCEEE
Confidence 6899999876666666667767664
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.2e-32 Score=264.99 Aligned_cols=207 Identities=24% Similarity=0.286 Sum_probs=155.7
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cc-----
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF----- 120 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~----- 120 (301)
..|||+||||+++|+.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++..... ++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 46999999999999999999999999999999999754 567999999999999999999999998753211 01
Q ss_pred cc--------------cCCCCcccc-cCCCCCCCCccccc-----------------ccccccCCCCCccc------cce
Q 022195 121 GT--------------NASAGFSRS-SWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNT 162 (301)
Q Consensus 121 ~~--------------~~f~g~g~~-~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~t 162 (301)
+. .+|++.+.. ....+.++.|+.+. ..+-+.|..|.+++ +.+
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~ 162 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET 162 (376)
T ss_pred CCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence 00 011110000 00112344555433 12345566666543 568
Q ss_pred eeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC------
Q 022195 163 FVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------ 226 (301)
Q Consensus 163 f~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------ 226 (301)
|..|.|.|.....++.++...+++.+|+.|.| .|.+.+.+.+.+.|+|.||+|+++|++|...|
T Consensus 163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~ 242 (376)
T PRK14280 163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV 242 (376)
T ss_pred CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence 99999999988888777766667889999988 58999999999999999999999999997554
Q ss_pred -CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 -WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 -~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.+.+||++|..+...+..++|+.+|||-
T Consensus 243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 271 (376)
T PRK14280 243 NGGPAGDLYVVFRVRPHEFFERDGDDIYC 271 (376)
T ss_pred CCCCCcCEEEEEEEecCCCeEEecCCEEE
Confidence 2356899999977666667777777775
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.1e-32 Score=262.58 Aligned_cols=207 Identities=23% Similarity=0.259 Sum_probs=154.3
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc-------
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------- 118 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------- 118 (301)
..|||+||||+++|+.+|||+|||+||++||||+++.. ++++|++|++||++|+||.+|..||+++.....
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 46999999999999999999999999999999999743 567999999999999999999999998753211
Q ss_pred -cccc--------------cCCCCc-ccc--cCCCCCCCCccccc-----------------ccccccCCCCCccc----
Q 022195 119 -HFGT--------------NASAGF-SRS--SWKGPPRPEALFVD-----------------ENACIGCRECVHHA---- 159 (301)
Q Consensus 119 -~~~~--------------~~f~g~-g~~--~~~gp~r~~difvd-----------------e~~CigC~~C~g~a---- 159 (301)
+|+. .+|++. +.. ....+.++.|+.+. ..+-+.|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 162 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPG 162 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCC
Confidence 1100 011110 000 00122344555433 12344566665543
Q ss_pred --cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-
Q 022195 160 --SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG- 226 (301)
Q Consensus 160 --p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G- 226 (301)
+.+|..|.|.|.....++.++...+++..|+.|.| .|.+.+.+.+.+.++|.||+|+++|++|...|
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~ 242 (380)
T PRK14297 163 TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ 242 (380)
T ss_pred CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence 56899999999988888887766678899999988 58888888899999999999999999996444
Q ss_pred ------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.++|||+..+...+..++++.+||+-
T Consensus 243 G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~ 276 (380)
T PRK14297 243 GEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYI 276 (380)
T ss_pred ccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEE
Confidence 2347899999877666666666767765
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4.3e-32 Score=262.39 Aligned_cols=203 Identities=21% Similarity=0.284 Sum_probs=147.4
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccc----c--c--
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ----M--R-- 117 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~----~--~-- 117 (301)
.+|||+||||+++|+.+|||+|||+||++||||+++.+ +.++|++|++||+||+||++|+.||+++.. . .
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 57999999999999999999999999999999999743 567999999999999999999999998531 0 0
Q ss_pred ----ccccc---c----------CCC--------C--cccccC----------CCCCCCCccccc---------------
Q 022195 118 ----FHFGT---N----------ASA--------G--FSRSSW----------KGPPRPEALFVD--------------- 145 (301)
Q Consensus 118 ----~~~~~---~----------~f~--------g--~g~~~~----------~gp~r~~difvd--------------- 145 (301)
.+++. + .|+ + .-|+.+ ..+.++.|+.+.
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~ 167 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMP 167 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEE
Confidence 00000 0 000 0 000110 112344455433
Q ss_pred --ccccccCCCCCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccE
Q 022195 146 --ENACIGCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPV 207 (301)
Q Consensus 146 --e~~CigC~~C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~ 207 (301)
..+-+.|..|.+++ +.+|..|.|.|..... .+.+ +++.+|+.|.| .|.+.+++.+.+.
T Consensus 168 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~--~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~ 243 (392)
T PRK14279 168 LRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN--QGAF--GFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRT 243 (392)
T ss_pred EeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEE--ecce--EEEEecCCCCceeEEeCCcCCCCCCCeEEEEeee
Confidence 22345666666543 5689999998865443 3433 46799999988 6899999999999
Q ss_pred EEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 208 LEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++|.||||+++|++|...| ++.++||++..+...+..++++.+|++-
T Consensus 244 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~ 297 (392)
T PRK14279 244 INVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTV 297 (392)
T ss_pred eEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEE
Confidence 9999999999999997554 2346899999876666666677767765
No 14
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=9.1e-32 Score=259.45 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=147.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc--------
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------- 118 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-------- 118 (301)
..|||+||||+++|+.+|||+|||+||++||||+|+++ +.++|++|++||++|+||.+|..||.++.....
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 47999999999999999999999999999999999854 567999999999999999999999997743210
Q ss_pred --cccc-----------cC---CC-Cccccc-----C-----CCCCCCCccccc-----------------ccccccCCC
Q 022195 119 --HFGT-----------NA---SA-GFSRSS-----W-----KGPPRPEALFVD-----------------ENACIGCRE 154 (301)
Q Consensus 119 --~~~~-----------~~---f~-g~g~~~-----~-----~gp~r~~difvd-----------------e~~CigC~~ 154 (301)
+++. .+ |+ +..+.. . ..+.++.|+.+. ..+-+.|..
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 0100 00 00 000000 0 112244555433 123455666
Q ss_pred CCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc---------ceeeceeeccccEEEEEeCCCCCCC
Q 022195 155 CVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV---------NCIHWVDREELPVLEFLIQPQPKKG 219 (301)
Q Consensus 155 C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg---------~Cig~~~~~e~k~LeV~Ip~G~~dG 219 (301)
|.+.+ +.+|..|.|.|..... . +..+++.+|+.|.| .|.+.+++.+.+.|+|.||||+++|
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 237 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR--G--GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG 237 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe--c--ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence 66543 5689999998865443 2 33467889999987 6899999999999999999999999
Q ss_pred cEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 220 YGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 220 ~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++|...| ++.++|||+..+...+..++++.+|++-
T Consensus 238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~ 279 (382)
T PRK14291 238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYL 279 (382)
T ss_pred CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEE
Confidence 9996544 2468899999876666666667766665
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=8.2e-32 Score=260.11 Aligned_cols=207 Identities=24% Similarity=0.291 Sum_probs=153.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--ccc--
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG-- 121 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~-- 121 (301)
..|||+||||+++||.+|||+|||+||++||||+++.+ ++++|++|++||++|+||.+|..||.++..... +++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 47999999999999999999999999999999999743 567999999999999999999999997743211 000
Q ss_pred ----cc-------------------CCCCc-cccc---CCCCCCCCccccc-----------------ccccccCCCCCc
Q 022195 122 ----TN-------------------ASAGF-SRSS---WKGPPRPEALFVD-----------------ENACIGCRECVH 157 (301)
Q Consensus 122 ----~~-------------------~f~g~-g~~~---~~gp~r~~difvd-----------------e~~CigC~~C~g 157 (301)
.+ +|+++ +... ..++.++.++.+. ..+-+.|..|.+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G 163 (386)
T PRK14277 84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKG 163 (386)
T ss_pred CcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCC
Confidence 00 01100 0000 0112344555432 123345556654
Q ss_pred c------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcE
Q 022195 158 H------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYG 221 (301)
Q Consensus 158 ~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~ 221 (301)
. .+.+|..|.|.|.....++.++...+.+.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++
T Consensus 164 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 243 (386)
T PRK14277 164 SGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQM 243 (386)
T ss_pred CCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcE
Confidence 3 357899999999888888887766666689999988 689999999999999999999999999
Q ss_pred EecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 222 VFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 222 I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
|...| ++.+||+||..+...+..++++.+||+-
T Consensus 244 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 283 (386)
T PRK14277 244 ITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYL 283 (386)
T ss_pred EEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEE
Confidence 96554 2346899999977666666777777765
No 16
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=6e-32 Score=259.85 Aligned_cols=203 Identities=25% Similarity=0.321 Sum_probs=148.6
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccccc----ccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----HFG 121 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~----~~~ 121 (301)
..|||+||||+++||.+|||+|||+||++||||+++. .+.++|++|++||+||+||.+|..||+++..... +++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 4799999999999999999999999999999999974 3567999999999999999999999998743210 000
Q ss_pred c------------------cCCCCcc-c----ccCCCCCCCCccccc-----------------ccccccCCCCCccc--
Q 022195 122 T------------------NASAGFS-R----SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-- 159 (301)
Q Consensus 122 ~------------------~~f~g~g-~----~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a-- 159 (301)
. .+|++.+ . .....+.++.|+.+. ..+-+.|..|.+++
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 0 0111100 0 000123345555533 12345566666543
Q ss_pred ----cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecC
Q 022195 160 ----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGG 225 (301)
Q Consensus 160 ----p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~ 225 (301)
+.+|..|.|.|..... .|.+ +++.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~--~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~ 238 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRT--QGFF--SVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVS 238 (372)
T ss_pred CCCCCccCCCCcCeEEEEEE--eceE--EEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEEC
Confidence 4688999988865443 3433 47789999988 5899999999999999999999999999755
Q ss_pred C-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 226 G-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 226 G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
| ++.++|+|+..+...+..++|+.+||+-
T Consensus 239 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~ 274 (372)
T PRK14286 239 GEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLIL 274 (372)
T ss_pred CccccCCCCCCCceEEEEEEEccCCCEEEecCCEEE
Confidence 4 2346899999977666667777777765
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=7.4e-32 Score=258.62 Aligned_cols=203 Identities=20% Similarity=0.263 Sum_probs=147.3
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc---c---
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H--- 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~--- 119 (301)
..|||+||||+++||.+|||+|||+|+++||||+++.+ +.++|++|++||++|+||.+|..||+++..... +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 36999999999999999999999999999999999753 567999999999999999999999998753211 0
Q ss_pred cccc-----------------CCCCc-ccccCCCCCCCCccccc-----------------ccccccCCCCCccc-----
Q 022195 120 FGTN-----------------ASAGF-SRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA----- 159 (301)
Q Consensus 120 ~~~~-----------------~f~g~-g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a----- 159 (301)
+..+ +|++. +...-..+.++.|+.+. ..+-+.|..|.+++
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGT 161 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCC
Confidence 0000 01100 00000112345555533 12345666666653
Q ss_pred -cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC--
Q 022195 160 -SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-- 226 (301)
Q Consensus 160 -p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-- 226 (301)
+.+|..|.|.|.... ..|. .+++..|+.|.| .|.+.+.+.+.+.++|.||||+++|++|...|
T Consensus 162 ~~~~C~~C~G~G~~~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 237 (365)
T PRK14285 162 SPSICNMCNGSGRVMQ--GGGF--FRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG 237 (365)
T ss_pred CCccCCCccCceeEEe--cCce--eEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence 567888888886442 3333 367899999988 68999999999999999999999999996544
Q ss_pred -----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 -----WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 -----~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.+||+|+..+...+..++++..||+.
T Consensus 238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~ 270 (365)
T PRK14285 238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYA 270 (365)
T ss_pred ccCCCCCCCCCEEEEEEEecCCCeEEeccceEE
Confidence 2457999998866665566667767765
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.7e-31 Score=256.31 Aligned_cols=204 Identities=24% Similarity=0.261 Sum_probs=147.9
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--cccc
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFGT 122 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--~~~~ 122 (301)
...|||+||||+++|+.+|||+|||+||++||||+++.+ +.+.|++|++||+||+||.+|..||+++..... +++.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 357999999999999999999999999999999999753 567999999999999999999999998753211 1100
Q ss_pred --c--------------CCC-Cccc--ccCCCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195 123 --N--------------ASA-GFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------S 160 (301)
Q Consensus 123 --~--------------~f~-g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p 160 (301)
+ +|+ +.+. .....+.++.++.+. ..+-+.|..|.+.+ +
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 161 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP 161 (366)
T ss_pred cCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence 0 111 0000 000122344455432 22344566665543 4
Q ss_pred ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195 161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---- 226 (301)
Q Consensus 161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G---- 226 (301)
.+|..|.|.|... .+.|.+ +++.+|+.|.| .|.|.+++.+.+.|+|.||+|+++|++|...|
T Consensus 162 ~~C~~C~G~G~~~--~~~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 237 (366)
T PRK14294 162 TTCPQCGGSGQVT--QSQGFF--SIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA 237 (366)
T ss_pred ccCCCcCCeEEEE--EEeeeE--EEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccC
Confidence 5788888888654 344433 47899999988 68999999999999999999999999997554
Q ss_pred ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.++|+++..+...+..++++..||+-
T Consensus 238 ~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~ 268 (366)
T PRK14294 238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHC 268 (366)
T ss_pred CCCCCCCCcEEEEEEEccCCcceecCCCEEE
Confidence 2457899998876666666777777775
No 19
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1.5e-31 Score=258.60 Aligned_cols=202 Identities=20% Similarity=0.249 Sum_probs=145.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccc---------
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR--------- 117 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~--------- 117 (301)
.|||+||||+++||.+|||+|||+||++||||+++++ ++++|++|++||++|+||.+|+.||+++....
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 4899999999999999999999999999999999853 56799999999999999999999999874311
Q ss_pred ccccc------------------------cCCCCcc--cccC---CCCCCCCccccc-----------------cccccc
Q 022195 118 FHFGT------------------------NASAGFS--RSSW---KGPPRPEALFVD-----------------ENACIG 151 (301)
Q Consensus 118 ~~~~~------------------------~~f~g~g--~~~~---~gp~r~~difvd-----------------e~~Cig 151 (301)
.+++. .+|++.+ ++.. ..+.++.++.+. ...-+.
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 01100 0011100 0000 112234444432 123445
Q ss_pred CCCCCcc------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCC
Q 022195 152 CRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQ 215 (301)
Q Consensus 152 C~~C~g~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G 215 (301)
|..|.++ .+.+|..|.|.|.... +.|. .+++.+|+.|.| .|.+.+.+.+.+.|+|.||||
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 236 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQ--SRGF--FSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG 236 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEE--Eece--EEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence 6666544 3568999998886553 3354 347789999988 689999999999999999999
Q ss_pred CCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 216 PKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 216 ~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+++|++|...| ++.||||++..+...+..++|+.+||+-
T Consensus 237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 282 (391)
T PRK14284 237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLIL 282 (391)
T ss_pred CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEE
Confidence 99999996554 3567899999876666666666767665
No 20
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.97 E-value=2.9e-31 Score=253.73 Aligned_cols=205 Identities=26% Similarity=0.302 Sum_probs=153.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc--------cc
Q 022195 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------HF 120 (301)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~--------~~ 120 (301)
|||+||||+++|+.+|||+|||+|+++||||+++.. +.++|++|++||++|+||.+|..||.++..... ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 799999999999999999999999999999999743 567999999999999999999999997743211 01
Q ss_pred cc--------------cCCCCc-cccc--CCCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195 121 GT--------------NASAGF-SRSS--WKGPPRPEALFVD-----------------ENACIGCRECVHHA------S 160 (301)
Q Consensus 121 ~~--------------~~f~g~-g~~~--~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p 160 (301)
.. .+|++. +... ...+.++.++.+. ..+-+.|..|.+.+ +
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 160 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP 160 (354)
T ss_pred CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence 00 011110 0000 0122344555433 22345666676654 5
Q ss_pred ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195 161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---- 226 (301)
Q Consensus 161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G---- 226 (301)
.+|..|.|.|.....++++++..+.+..|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...|
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 240 (354)
T TIGR02349 161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA 240 (354)
T ss_pred ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence 6899999999988888888866666889999988 68999999999999999999999999996554
Q ss_pred ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.++||++..+...+..++++.+|++-
T Consensus 241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~ 271 (354)
T TIGR02349 241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYI 271 (354)
T ss_pred CCCCCCCCCEEEEEEEecCcceEEecCCEEE
Confidence 2346899999866665566666667765
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.2e-31 Score=255.40 Aligned_cols=208 Identities=24% Similarity=0.330 Sum_probs=153.9
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHhhhhcccccccccccccccccccc----
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG---- 121 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~~~---- 121 (301)
...|||+||||+++||.+|||+|||+||++||||+|++ .+.++|++|++||++|+||.+|..||+++.....+++
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 36799999999999999999999999999999999975 3567999999999999999999999997743211110
Q ss_pred ----------ccCCCCcc--cccC-------CCCCCCCcccccc-----------------cccccCCCCCcc------c
Q 022195 122 ----------TNASAGFS--RSSW-------KGPPRPEALFVDE-----------------NACIGCRECVHH------A 159 (301)
Q Consensus 122 ----------~~~f~g~g--~~~~-------~gp~r~~difvde-----------------~~CigC~~C~g~------a 159 (301)
.+++++++ ++.+ .++.++.++.++. ..-+.|..|.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 162 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSE 162 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCC
Confidence 00000000 1111 1233455555431 123445555543 4
Q ss_pred cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC---
Q 022195 160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG--- 226 (301)
Q Consensus 160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G--- 226 (301)
+..|..|.|.|.....++.++...+.+.+|+.|.| .|.+.+.+.+.+.++|.||+|+++|++|...|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~ 242 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGE 242 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEecccc
Confidence 56899999999988888887755556789999988 68999999999999999999999999996554
Q ss_pred ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
...+||++|..+......++++.+|++-
T Consensus 243 ~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~ 274 (378)
T PRK14283 243 MGDRGGEPGDLYVVIKVKPHKIFRREGANLYY 274 (378)
T ss_pred CCCCCCCCccEEEEEEEEcCCCEEEecCCEEE
Confidence 2456899999977666666667767665
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=2.6e-31 Score=254.92 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=153.0
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc----ccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----HFG 121 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~----~~~ 121 (301)
.|||+||||+++||.+|||+|||+|+++||||+++.+ +.+.|++|++||++|+||.+|..||.++..... +++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 6999999999999999999999999999999999753 557999999999999999999999998753210 111
Q ss_pred c--------------cCCCCc-cc---ccC-CCC---CCCCccccc-----------------ccccccCCCCCccc---
Q 022195 122 T--------------NASAGF-SR---SSW-KGP---PRPEALFVD-----------------ENACIGCRECVHHA--- 159 (301)
Q Consensus 122 ~--------------~~f~g~-g~---~~~-~gp---~r~~difvd-----------------e~~CigC~~C~g~a--- 159 (301)
. .+|++. +. +.+ ..+ .++.++... ..+.+.|..|.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 0 011110 00 000 001 113444432 22344555565543
Q ss_pred --cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-
Q 022195 160 --SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG- 226 (301)
Q Consensus 160 --p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G- 226 (301)
+.+|..|.|.|.....++.|.+.++++.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...|
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~ 242 (365)
T PRK14290 163 GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGK 242 (365)
T ss_pred CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccc
Confidence 46899999999887777777766777889999987 68999999999999999999999999997555
Q ss_pred ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ----WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ----~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.|+||++..++..+..++|+..|++-
T Consensus 243 G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~ 274 (365)
T PRK14290 243 GQSYGGRTGDLYVVLRVNNDPNIQRINDDLYV 274 (365)
T ss_pred cCCCCCCCCCEEEEEEEcCCCCEEEecCCEEE
Confidence 3468999999977776666777766665
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=4e-31 Score=254.20 Aligned_cols=203 Identities=23% Similarity=0.276 Sum_probs=147.9
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~ 119 (301)
..|||+||||+++||.+|||+|||+||++||||+++.+ ++++|++|++||+||+||.+|..||+++..... +
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999753 557999999999999999999999998753211 1
Q ss_pred ccc-------------cCCCCccc--ccCCCCCCCCccccc-----------------ccccccCCCCCccc------cc
Q 022195 120 FGT-------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SN 161 (301)
Q Consensus 120 ~~~-------------~~f~g~g~--~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~ 161 (301)
|.. .+|++.+. ..-..+.++.|+.+. ..+-+.|..|.+.+ +.
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 162 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE 162 (373)
T ss_pred cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence 100 00110000 000123345555533 22345566666543 56
Q ss_pred eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-----
Q 022195 162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----- 226 (301)
Q Consensus 162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G----- 226 (301)
+|..|.|.|.... +.|. .+++..|+.|.| .|.|.+++.+.+.|+|.||+|+++|++|...|
T Consensus 163 ~C~~C~G~G~v~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 163 TCRHCGGSGQVRQ--SQGF--FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred ccCCccCeeEEEE--Eeee--EEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 7999998886543 3343 356899999987 68999999999999999999999999996444
Q ss_pred --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 --WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 --~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.+||++|..+...+...+++.+||+-
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~ 268 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVV 268 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEE
Confidence 2456899999877666666677777765
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=3.8e-31 Score=254.39 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=146.9
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~ 119 (301)
..|||+||||+++||.+|||+|||+||++||||+++.. +.++|++|++||++|+||.+|..||.++..... +
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 57999999999999999999999999999999999743 567999999999999999999999998743211 1
Q ss_pred ccc--c-----------CCCCcccccCCCCCCCCccccc-----------------ccccccCCCCCccc------ccee
Q 022195 120 FGT--N-----------ASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTF 163 (301)
Q Consensus 120 ~~~--~-----------~f~g~g~~~~~gp~r~~difvd-----------------e~~CigC~~C~g~a------p~tf 163 (301)
++. + +|++.+......+.++.|+.+. ..+.+.|..|.+.+ +..|
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C 162 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTC 162 (371)
T ss_pred CCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccC
Confidence 110 0 0110000000123345555432 22455666676653 4579
Q ss_pred eeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC-------
Q 022195 164 VMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------- 226 (301)
Q Consensus 164 ~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------- 226 (301)
..|.|.|.....+ |.. +++.+|+.|.| .|.+.+++.+.+.|+|.||+|+++|++|...|
T Consensus 163 ~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~ 238 (371)
T PRK10767 163 PTCHGAGQVRMQQ--GFF--TVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGER 238 (371)
T ss_pred CCCCCeeEEEEee--ceE--EEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCC
Confidence 9999888655433 433 47789999988 68999999999999999999999999996554
Q ss_pred CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.+||||+..+...+..++++.+|++.
T Consensus 239 ~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 266 (371)
T PRK10767 239 GGPAGDLYVQIHVKEHPIFERDGNDLYC 266 (371)
T ss_pred CCCCcCEEEEEEEeeCCCEEEecCCEEE
Confidence 2457899998866665566666767664
No 25
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=5.9e-31 Score=254.91 Aligned_cols=206 Identities=24% Similarity=0.290 Sum_probs=151.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc--------
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------- 118 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-------- 118 (301)
.|||+||||+++|+.+|||+|||+|+++||||+++.+ +.+.|++|++||++|+||.+|..||.++.....
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 6999999999999999999999999999999999753 567999999999999999999999998743211
Q ss_pred -cccc-------------cCCCCcc-c--------------ccCC----CCCCCCccccc-----------------ccc
Q 022195 119 -HFGT-------------NASAGFS-R--------------SSWK----GPPRPEALFVD-----------------ENA 148 (301)
Q Consensus 119 -~~~~-------------~~f~g~g-~--------------~~~~----gp~r~~difvd-----------------e~~ 148 (301)
+++. .+|++.+ + .... .+.++.|+.+. ..+
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 0100 1122100 0 0000 11234455433 112
Q ss_pred cccCCCCCcc-----ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeC
Q 022195 149 CIGCRECVHH-----ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQ 213 (301)
Q Consensus 149 CigC~~C~g~-----ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip 213 (301)
-+.|..|.+. .+.+|..|.|.|.....++.++...+.+.+|+.|.| .|.|.+++.+.+.|+|.||
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 242 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVP 242 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecC
Confidence 3345555443 356899999999887777777666666889999988 6899999999999999999
Q ss_pred CCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 214 PQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 214 ~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+|+++|++|...| ++.+||+++..+...+..++|+.+||+-
T Consensus 243 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~ 290 (397)
T PRK14281 243 AGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY 290 (397)
T ss_pred CCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEE
Confidence 9999999996554 2467899999877666666677777765
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=1e-30 Score=252.52 Aligned_cols=204 Identities=21% Similarity=0.275 Sum_probs=146.8
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccc----ccccccc--
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDA----SIGQMRF-- 118 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~----~~~~~~~-- 118 (301)
...|||+||||+++||.+|||+|||+||++||||+++.+ ++++|++|++||+||+||.+|..||+ ++.....
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 357999999999999999999999999999999999743 56799999999999999999999998 5432110
Q ss_pred -------cccc---cCCC---------Cc------ccccC-------CCCCCCCccccc-----------------cccc
Q 022195 119 -------HFGT---NASA---------GF------SRSSW-------KGPPRPEALFVD-----------------ENAC 149 (301)
Q Consensus 119 -------~~~~---~~f~---------g~------g~~~~-------~gp~r~~difvd-----------------e~~C 149 (301)
+|+. ..|+ ++ .|+.+ ..+.++.|+.+. ..+-
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~ 166 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQ 166 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeecc
Confidence 0100 0000 00 01111 112334455432 1234
Q ss_pred ccCCCCCccc------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeC
Q 022195 150 IGCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQ 213 (301)
Q Consensus 150 igC~~C~g~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip 213 (301)
+.|..|.+.+ +.+|..|.|.|...... +.+ +++.+|+.|.| .|.+.+++.+.+.|+|.||
T Consensus 167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip 242 (389)
T PRK14295 167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGF--SLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIP 242 (389)
T ss_pred ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cce--EEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeC
Confidence 4566666543 56899999888665443 433 46789999988 6889999999999999999
Q ss_pred CCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 214 PQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 214 ~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+|+++|++|...| ++.++||+|..+...+..++|+.+||+-
T Consensus 243 ~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~ 290 (389)
T PRK14295 243 AGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTV 290 (389)
T ss_pred CCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEE
Confidence 9999999997554 2456899999877666667777777765
No 27
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=3.4e-30 Score=248.95 Aligned_cols=207 Identities=23% Similarity=0.198 Sum_probs=151.8
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccccc------c
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H 119 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~ 119 (301)
..|||+||||+++|+.+|||+|||+||++||||+++.+ +.++|++|++||++|+||.+|..||+++..... +
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 57999999999999999999999999999999999753 567999999999999999999999997643211 1
Q ss_pred ccc-c---------C---CCCc--cc------c---cCCCCCCCCccccc-----------------ccccccCCCCCcc
Q 022195 120 FGT-N---------A---SAGF--SR------S---SWKGPPRPEALFVD-----------------ENACIGCRECVHH 158 (301)
Q Consensus 120 ~~~-~---------~---f~g~--g~------~---~~~gp~r~~difvd-----------------e~~CigC~~C~g~ 158 (301)
++. . + |++. +. . ....+.++.++.+. ..+-+.|..|.+.
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 163 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT 163 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCC
Confidence 110 0 0 1110 00 0 00112233444332 1234556666554
Q ss_pred c------cceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEE
Q 022195 159 A------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGV 222 (301)
Q Consensus 159 a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I 222 (301)
+ +.+|..|+|.|.....++.++...+++..|+.|.| .|.+.+.+.+.+.++|.||+|+++|++|
T Consensus 164 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 243 (386)
T PRK14289 164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQL 243 (386)
T ss_pred CCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEE
Confidence 3 46899999999988888887766667899999987 6999999999999999999999999999
Q ss_pred ecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 223 FGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 223 ~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.+.| +..+||++|..+.......+++..|++.
T Consensus 244 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~ 282 (386)
T PRK14289 244 SMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIY 282 (386)
T ss_pred EEeccccCCCCCCCCccEEEEEEEecCCcccccccceeE
Confidence 7554 2357899999866554444556666665
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=9e-30 Score=244.84 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=150.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc------ccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------HFG 121 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~------~~~ 121 (301)
.|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++..... .|+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 5899999999999999999999999999999999754 567999999999999999999999998753210 011
Q ss_pred c----------cCCCCccc--ccC-CCCCCCCccccc-----------------ccccccCCCCCccc-------cceee
Q 022195 122 T----------NASAGFSR--SSW-KGPPRPEALFVD-----------------ENACIGCRECVHHA-------SNTFV 164 (301)
Q Consensus 122 ~----------~~f~g~g~--~~~-~gp~r~~difvd-----------------e~~CigC~~C~g~a-------p~tf~ 164 (301)
. .+|++.++ ..+ .++.++.++... ....+.|..|.+++ +.+|.
T Consensus 82 ~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~ 161 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCP 161 (371)
T ss_pred ccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCC
Confidence 0 11221110 001 123344444432 22455677776543 56899
Q ss_pred eeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCCC-----C
Q 022195 165 MDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWE-----R 229 (301)
Q Consensus 165 ~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~-----~ 229 (301)
.|.|.|......+..+...+++..|..|.| .|.+.+.+.+.+.++|.||+|+.+|++|...|.+ .
T Consensus 162 ~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~ 241 (371)
T PRK14292 162 TCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG 241 (371)
T ss_pred CCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCC
Confidence 999999887777666555566889999987 6899999999999999999999999999755521 2
Q ss_pred CCceehhhHHHHHHHHHHhhCCCCC
Q 022195 230 PANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 230 ~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.+|+||..+...+...+++.+|++.
T Consensus 242 ~GDL~v~i~v~~h~~f~r~g~dL~~ 266 (371)
T PRK14292 242 NGDLYVHIEMEPHPELRREQEHLIY 266 (371)
T ss_pred CCCEEEEEEEecCCccccchhceeE
Confidence 3899998855554445566666765
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=9.2e-30 Score=244.96 Aligned_cols=207 Identities=23% Similarity=0.298 Sum_probs=151.4
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc---ccc--
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---HFG-- 121 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~---~~~-- 121 (301)
..|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++..... +++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 36999999999999999999999999999999999754 567999999999999999999999997743211 110
Q ss_pred ----------ccCCCCccc-c------cCCCCCCCCccccc-----------------ccccccCCCCCcc------ccc
Q 022195 122 ----------TNASAGFSR-S------SWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASN 161 (301)
Q Consensus 122 ----------~~~f~g~g~-~------~~~gp~r~~difvd-----------------e~~CigC~~C~g~------ap~ 161 (301)
..+|++++. . ...++.++.++.+. ....+.|..|.+. .+.
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 011211000 0 00122334444432 1234556666553 246
Q ss_pred eeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCC----
Q 022195 162 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW---- 227 (301)
Q Consensus 162 tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~---- 227 (301)
+|..|.|.|.....++.++...+.+..|+.|.| .|.+.+++.+.+.++|.||||+++|++|.+.|.
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~ 241 (374)
T PRK14293 162 TCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAG 241 (374)
T ss_pred eCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCC
Confidence 899999999888888888766666789999987 688899999999999999999999999975552
Q ss_pred ---CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 228 ---ERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 228 ---~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
..+||++|..+.......++++.|++-
T Consensus 242 ~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~ 271 (374)
T PRK14293 242 LRGGPPGDLYVYLFVKNDPEFRRDGINILS 271 (374)
T ss_pred CCCCCCcCEEEEEEEeCCCccChhhhceEE
Confidence 346899998866555455556656654
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=6.6e-30 Score=245.78 Aligned_cols=202 Identities=22% Similarity=0.295 Sum_probs=145.5
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccccccccc------cc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH------FG 121 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~------~~ 121 (301)
.|||+||||+++||.+|||+|||+|+++||||+++.. +.++|++|++||++|+||.+|..||+++.....+ .+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 6999999999999999999999999999999999753 4579999999999999999999999986432110 00
Q ss_pred c-cC------------CCCc-cc-c--cC-CCCCCCCccccc-----------------ccccccCCCCCccc------c
Q 022195 122 T-NA------------SAGF-SR-S--SW-KGPPRPEALFVD-----------------ENACIGCRECVHHA------S 160 (301)
Q Consensus 122 ~-~~------------f~g~-g~-~--~~-~gp~r~~difvd-----------------e~~CigC~~C~g~a------p 160 (301)
. +. |+++ +. + .+ ..+.++.++.+. ..+-+.|..|.+.+ +
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~ 162 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETV 162 (372)
T ss_pred CCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCC
Confidence 0 00 1000 00 0 00 011244455433 22345666676643 5
Q ss_pred ceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCC----
Q 022195 161 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---- 226 (301)
Q Consensus 161 ~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G---- 226 (301)
.+|..|.|.|..+. +.|.+ +++.+|+.|.| .|.+.+++.+.+.++|.||+|+++|++|...|
T Consensus 163 ~~C~~C~G~G~~~~--~~g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~ 238 (372)
T PRK14300 163 TTCDACSGVGATRM--QQGFF--TIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA 238 (372)
T ss_pred ccCCCccCeEEEEE--eeceE--EEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence 67899998886553 33432 47789999987 68999999999999999999999999997554
Q ss_pred ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 227 ---WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 227 ---~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
++.++||++..+...+..++++..|++-
T Consensus 239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~ 269 (372)
T PRK14300 239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHC 269 (372)
T ss_pred CCCCCCCCCEEEEEEECCCCCeEEecCCEEE
Confidence 2357899998866555556666666665
No 31
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-26 Score=213.94 Aligned_cols=206 Identities=23% Similarity=0.215 Sum_probs=128.6
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccccccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG 121 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~~~~ 121 (301)
.....+|||+||||+++|+..|||+||||||++||||+||++ +++.|+.|+.||+|||||++|+.||.+|.......+
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~ 90 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDEN 90 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccc
Confidence 345679999999999999999999999999999999999975 678999999999999999999999999854433111
Q ss_pred c-------------cCCCCccc---ccC--CCCCCCCcccccccccccCCCCCccc------ccee-----eeeCCcceE
Q 022195 122 T-------------NASAGFSR---SSW--KGPPRPEALFVDENACIGCRECVHHA------SNTF-----VMDEATGCA 172 (301)
Q Consensus 122 ~-------------~~f~g~g~---~~~--~gp~r~~difvde~~CigC~~C~g~a------p~tf-----~~c~g~G~~ 172 (301)
. .+|+..|+ ... .....+.++.++.+.|..|-.-.... +..+ ..|.+ -..
T Consensus 91 ~~~~~g~~~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~-~~~ 169 (336)
T KOG0713|consen 91 KDGEGGGGGNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNC-RLE 169 (336)
T ss_pred cccccCCcccchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCC-hhh
Confidence 0 11221111 000 11222333333333332221111110 0000 11111 122
Q ss_pred EEEEeeCC-ccccc-cccccCCCcceeeceeeccccEEEEEeCCCCCCCcEE--ecCC----CCCCCceehhhHHHHHHH
Q 022195 173 RVKVQYGD-SDQNI-EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGV--FGGG----WERPANVFMAAKAFNKQL 244 (301)
Q Consensus 173 ~v~~q~g~-~~~~i-q~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I--~g~G----~~~~~~vfv~~~~~~~~~ 244 (301)
.+.++.++ ..+.+ +..|+.||+ .+...+...+++.+..|+.+|..+ .+.| .+.|+|+++-..+...-+
T Consensus 170 ~~~~~~~~g~~~~~q~~~~~~~~~----~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~ 245 (336)
T KOG0713|consen 170 MFTQQEGPGRFQMLQEAVCDECPN----VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPR 245 (336)
T ss_pred heeeccCCChhhhhhhhhhccCCc----cceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccc
Confidence 33344443 22333 456999998 445667778999999999999987 3444 477888888775544444
Q ss_pred HHHhhCCCCC
Q 022195 245 QQQAAGGSNP 254 (301)
Q Consensus 245 ~~~~~~~~~~ 254 (301)
+.++..|++.
T Consensus 246 ~~~k~~~~~~ 255 (336)
T KOG0713|consen 246 FERKGDDLYT 255 (336)
T ss_pred eecCccchhh
Confidence 4444444544
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8e-26 Score=210.07 Aligned_cols=215 Identities=19% Similarity=0.199 Sum_probs=147.8
Q ss_pred eeccCCCCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccc
Q 022195 35 RCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
.+...+..+......|||+||||+++|+..|||+||++|+|+||||.|.++ +.++|++|.+|||+|+|+++|..||..+
T Consensus 29 ~~~r~~~~s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~ 108 (288)
T KOG0715|consen 29 LNTRKFHASRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYG 108 (288)
T ss_pred cccceeeecccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 344444445555566999999999999999999999999999999999875 5679999999999999999999999987
Q ss_pred cccccccc-------ccCCCC-cc--cc------cCCCCC----CCCccccc---ccccccCCCC---CccccceeeeeC
Q 022195 114 GQMRFHFG-------TNASAG-FS--RS------SWKGPP----RPEALFVD---ENACIGCREC---VHHASNTFVMDE 167 (301)
Q Consensus 114 ~~~~~~~~-------~~~f~g-~g--~~------~~~gp~----r~~difvd---e~~CigC~~C---~g~ap~tf~~c~ 167 (301)
.....+++ ...|++ .- .. .+...+ ++..--+. ...|.+|..- .+.....|..|.
T Consensus 109 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 188 (288)
T KOG0715|consen 109 LEQHGEFGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCS 188 (288)
T ss_pred hhccccccCCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhh
Confidence 65311111 011222 00 00 010000 00000011 1233333322 234556899999
Q ss_pred CcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEEeCCCCCCCcEEecCCCCCCCceehhh
Q 022195 168 ATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAA 237 (301)
Q Consensus 168 g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~~~~~vfv~~ 237 (301)
+.|......+..+... +|..|.+ .|++.+.+...+.+.+.+|+|..++.+|...|.+.. +|||..
T Consensus 189 ~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-~l~v~~ 263 (288)
T KOG0715|consen 189 GRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-DLFVRL 263 (288)
T ss_pred CcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-eEEEEE
Confidence 9986655444443322 7888866 588888889999999999999999999987765433 999999
Q ss_pred HHHHHHHHHHhhCCCCC
Q 022195 238 KAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 238 ~~~~~~~~~~~~~~~~~ 254 (301)
.+-+.+.++++..+.+-
T Consensus 264 ~v~~~~~~~r~~~~i~~ 280 (288)
T KOG0715|consen 264 IVAKSPSFRREGKDILY 280 (288)
T ss_pred EeccCcccccccCcccc
Confidence 88887777776655544
No 33
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.8e-23 Score=195.01 Aligned_cols=193 Identities=22% Similarity=0.266 Sum_probs=115.0
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccccc-cccccCC
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGTNAS 125 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~-~~~~~~f 125 (301)
..|||+||||+++||.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++..... ++.....
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 57999999999999999999999999999999999753 567999999999999999999999998754211 1110000
Q ss_pred CCcccccCCCC--CCCCcccccccccccCCCCCccccceeeeeCCcceEEEEEeeC-C----ccccccccccCCCcceee
Q 022195 126 AGFSRSSWKGP--PRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG-D----SDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 126 ~g~g~~~~~gp--~r~~difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g-~----~~~~iq~aC~~Cpg~Cig 198 (301)
++.+...|.+. ....++|-..+ -+.+.-.+. ...+.. ...+ .+.| + ....+.+++..|..
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~f--gg~~~~~~~-g~~~~~-~~~~-----~~~g~dl~~~l~isL~ea~~G~~~---- 149 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLF--GGRGGFGGF-GDLFGS-VGRR-----ARKGRDLEAELPLTLEEAYRGGEK---- 149 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHh--CCCCCCCCc-cccccc-ccCC-----CCCCCCEEEEEEecHHHHhCCCeE----
Confidence 00010111110 01123332211 011100000 000000 0000 0111 1 11123344444443
Q ss_pred ceeeccccEEEEEeCCCCCCCcEEecCCCCC-CCceehhhHHHHHHHHHHhhCCCCC
Q 022195 199 WVDREELPVLEFLIQPQPKKGYGVFGGGWER-PANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 199 ~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~~~-~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.... ..+.++|.||+|+++|++|...|.+. .||++|......+..++++.+|++-
T Consensus 150 ~i~l-~g~~~~V~Ip~G~~~G~~ir~~g~G~~~GDL~v~i~v~~h~~f~R~G~DL~~ 205 (291)
T PRK14299 150 VVEV-AGERLSVRIPPGVREGQVIRLAGKGRQGGDLYLVVRLLPHPVFRLEGDDLYA 205 (291)
T ss_pred EEee-CCEEEEEecCCCcCCCcEEEECCCCCCCCCEEEEEEEcCCCCeEEECCEEEE
Confidence 2222 23579999999999999998666432 3899999876666667777777765
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.87 E-value=1.1e-22 Score=191.01 Aligned_cols=67 Identities=34% Similarity=0.605 Sum_probs=62.0
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
..|||+||||+++||.+|||+|||+|+++||||++++. +.++|++|++||++|+||.+|..||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 36999999999999999999999999999999998754 56799999999999999999999999764
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.4e-19 Score=158.17 Aligned_cols=74 Identities=34% Similarity=0.497 Sum_probs=67.7
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
+.+....|+|+||||+++|+.++||++||+|+++||||++++. +.++|++||+||+||+||.+|..||.++...
T Consensus 25 ~~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 25 SEDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred ccccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence 4445588999999999999999999999999999999999984 7889999999999999999999999997654
No 36
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.69 E-value=1.4e-17 Score=120.77 Aligned_cols=61 Identities=44% Similarity=0.769 Sum_probs=57.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccc
Q 022195 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD 110 (301)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD 110 (301)
|||+||||+++++.++||++|+++++++|||+++.. +.+.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999999999998664 3568999999999999999999998
No 37
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.4e-17 Score=159.37 Aligned_cols=74 Identities=39% Similarity=0.596 Sum_probs=66.6
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF 118 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~~ 118 (301)
+...+.||+||||..+|+..|||++||+|||+||||+||+. +.+.|+.|+.||+|||||..|..||.+..+...
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 34567899999999999999999999999999999999874 456999999999999999999999998876543
No 38
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.1e-17 Score=151.31 Aligned_cols=69 Identities=41% Similarity=0.596 Sum_probs=64.8
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
..|||+||||+++|+..||++|||.++++||||+||++ +++.|+.|.+||+||+|+.+|..||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 68999999999999999999999999999999999875 6789999999999999999999999988643
No 39
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.63 E-value=2.3e-16 Score=162.62 Aligned_cols=74 Identities=31% Similarity=0.405 Sum_probs=66.3
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
......++||+||||+++||..+||+|||+||++||||+++.+ +.++|+.|++||+||+||.+|..||.+|...
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 3344578999999999999999999999999999999999764 5569999999999999999999999987643
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.9e-16 Score=151.76 Aligned_cols=72 Identities=32% Similarity=0.457 Sum_probs=64.8
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
...+.+||.+|+|+++||.+|||+|||++++.||||+.-++ +++.|+.|.+|||||+||.+|.+||.+|.++
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 44567999999999999999999999999999999998643 4569999999999999999999999998654
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.4e-16 Score=138.46 Aligned_cols=70 Identities=36% Similarity=0.560 Sum_probs=63.0
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
..+|+|+||||..+|+..+|++||++|++++|||+++++ +.+.|+.|+.||.||+|.++|+.||..+.-.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 345999999999999999999999999999999999743 4569999999999999999999999987543
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=1.2e-15 Score=108.93 Aligned_cols=57 Identities=47% Similarity=0.707 Sum_probs=51.9
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHhhhhcccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDL 105 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~f~~i~~AY~vL~d~~~ 105 (301)
.|||+||||+++++.++||++|+++++++|||+++. .+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 479999999999999999999999999999999984 256799999999999999853
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.58 E-value=2.1e-15 Score=105.72 Aligned_cols=53 Identities=49% Similarity=0.806 Sum_probs=49.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhc
Q 022195 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d 102 (301)
|||+||||+++++.++||++|++|++++|||+++. .+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999985 356799999999999986
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.58 E-value=6.8e-16 Score=130.56 Aligned_cols=66 Identities=26% Similarity=0.300 Sum_probs=60.8
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 49 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
..+|+||||+++| |..+||+|||++++++|||++++ .+.|++|++||++|+|+.+|..||..+...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~--~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD--EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch--hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 4589999999999 99999999999999999999764 479999999999999999999999987654
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.3e-15 Score=132.00 Aligned_cols=75 Identities=32% Similarity=0.490 Sum_probs=67.3
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (301)
.......|+||||||++++|.+|||+|||+|++++||||++.+ .++.|..|++||+.|+|+..|..|..++...+
T Consensus 93 ~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 93 RRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 3566789999999999999999999999999999999999763 45688999999999999999999999987654
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-14 Score=127.75 Aligned_cols=68 Identities=44% Similarity=0.637 Sum_probs=62.6
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhcccccccccccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
....+||+||||+++|+..|||++||++++++|||+++.. +.+.|+.|++||++|+|+.+|..||..+
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3467899999999999999999999999999999999865 4589999999999999999999999863
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.48 E-value=3.8e-14 Score=132.40 Aligned_cols=71 Identities=35% Similarity=0.582 Sum_probs=64.0
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhcccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
.+..+|||+||||.++|+..||.+|||++|.+||||...++ ++++|..|..|-|||+||++|+.||..-.+
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 35678999999999999999999999999999999998653 566899999999999999999999997643
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=2.7e-14 Score=144.60 Aligned_cols=66 Identities=42% Similarity=0.624 Sum_probs=61.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
.|||+||||+++|+..+||++||+|++++|||+++.. +..+|+.|++||++|+||.+|..||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 5899999999999999999999999999999998763 45689999999999999999999999764
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=1.4e-13 Score=119.08 Aligned_cols=65 Identities=26% Similarity=0.528 Sum_probs=57.1
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhcccccccccccc
Q 022195 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
.|||+||||++. ++..+|+++||++++++|||+.... +.+.|..||+||++|+||.+|..|+-.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999997 6889999999999999999997543 2347889999999999999999998754
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=2.1e-13 Score=117.38 Aligned_cols=65 Identities=32% Similarity=0.469 Sum_probs=57.1
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcch-----HHHHHHHHHHhhhhcccccccccccc
Q 022195 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGH-----EHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-----~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
.|||++|||++. ++..+|+++|++|++++|||++..... ..+..||+||++|+||.+|..|+-.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999997 789999999999999999999865321 24679999999999999999998765
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=7.5e-13 Score=114.62 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=60.2
Q ss_pred CCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhccccccccccccc
Q 022195 46 SKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
+...|||++|||++. .+..+|+++||+|++++|||++... +.+.+..||+||++|+||.+|..|+-.+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 356899999999999 5689999999999999999998643 23478999999999999999999998654
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=1e-12 Score=114.21 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=57.5
Q ss_pred ccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195 48 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 48 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
..|||+||||++. ++..+|+++|++|++++|||++.... .+.+..||+||++|+||.+|..|+-.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 3799999999996 68999999999999999999986432 2245899999999999999999997543
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.34 E-value=1.1e-12 Score=105.77 Aligned_cols=57 Identities=32% Similarity=0.460 Sum_probs=51.0
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhh
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~ 101 (301)
...+...++|+||||++++|.+|||++||+|++++|||+++ ..+.|.+|++||++|.
T Consensus 59 ~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--STYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHh
Confidence 45566789999999999999999999999999999999964 3578899999999995
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.3e-13 Score=128.18 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=66.7
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.+..+..|+|.+|||+++++.++||+.||++|...|||||..+ +++.|+.|+.||++|+|+++|..||......
T Consensus 229 ~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 229 SRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 3445589999999999999999999999999999999999865 5679999999999999999999999987543
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-12 Score=117.20 Aligned_cols=71 Identities=32% Similarity=0.572 Sum_probs=64.0
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
-...|.|+||||..+++..||++|||+|++++|||+++++ +.+.|+.|..||++|.|.+.|..||-.....
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 3456899999999999999999999999999999999764 5569999999999999999999999887544
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.1e-12 Score=118.21 Aligned_cols=67 Identities=40% Similarity=0.600 Sum_probs=62.0
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
..|||+||+|.++|+..||++||+++++++|||+++.. +.++|++|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 47899999999999999999999999999999998876 34479999999999999999999999986
No 57
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.9e-12 Score=121.24 Aligned_cols=72 Identities=35% Similarity=0.528 Sum_probs=64.7
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---cchHHHHHHHHHHhhhhccccccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
-+.++..|||.||||..+++..|||+|||++++.+|||++.. +++.+|+++.+||.+|+||.+|..||....
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 345668999999999999999999999999999999999854 356699999999999999999999998653
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.20 E-value=1.7e-11 Score=113.20 Aligned_cols=57 Identities=35% Similarity=0.547 Sum_probs=50.5
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------cchHHHHHHHHHHhhhhc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---------~~~~~f~~i~~AY~vL~d 102 (301)
..-.++|+||||++++|.+|||++||+|+++||||++.. .+.++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999632 145699999999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.14 E-value=2.8e-11 Score=121.44 Aligned_cols=60 Identities=35% Similarity=0.507 Sum_probs=55.9
Q ss_pred ccCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccc
Q 022195 48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109 (301)
Q Consensus 48 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~Y 109 (301)
..++|++|||+++| +..+||+|||++++++|||++++ .+.|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd--eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD--EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc--HHHHHHHHHHHHHHhcHHHhhhc
Confidence 46799999999999 99999999999999999999754 57999999999999999999888
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.03 E-value=1e-10 Score=112.22 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=64.4
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----chHHHHHHHHHHhhhhcccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---K----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR 117 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~----~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~ 117 (301)
...-.|+||||||+.+++..+||++||+|+.++||||.++ + -++.+++|++||+.|+|...|..|-.+|...+
T Consensus 94 ~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred HHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 3456899999999999999999999999999999999876 1 34688999999999999999999999875543
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=3e-10 Score=98.43 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=57.1
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 49 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
.|||++|||++. .+..++++.|+.|++++|||+....+ .+....||+||.+|+||.+|..|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999999 89999999999999999999975432 2356789999999999999999866543
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.85 E-value=2.7e-09 Score=91.19 Aligned_cols=54 Identities=30% Similarity=0.490 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhccccccccccccc
Q 022195 61 ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 61 as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
.+..+|+++|++|++++|||+.... +...+..||+||++|+||.+|..|+-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 4678999999999999999986442 33578999999999999999999998764
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.4e-09 Score=91.55 Aligned_cols=65 Identities=29% Similarity=0.451 Sum_probs=57.5
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD 108 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~ 108 (301)
+..-.-++|+||.|.|+.+.++||+.||+|++..|||+|+++ ++..|..|..||.+|-|+.-|..
T Consensus 48 styfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 48 STYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 344577899999999999999999999999999999999986 45689999999999999875543
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-08 Score=91.46 Aligned_cols=73 Identities=37% Similarity=0.446 Sum_probs=62.9
Q ss_pred CCCCCCCccCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCC---Ccc-hHHHHHHHHHHhhhhcccccccccccc
Q 022195 41 AGERASKKKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAG---QKG-HEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 41 ~~~~~~~~~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~---~~~-~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
...+.+...|+|.+|||+.- +++.+|.++.++.+.+||||+.. +.+ ...|+.|+.||++|+|+.+|..||.--
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 45677788999999999876 89999999999999999999972 222 358999999999999999999999853
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.6e-07 Score=94.04 Aligned_cols=60 Identities=30% Similarity=0.426 Sum_probs=51.4
Q ss_pred CCCCCCccCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195 42 GERASKKKNYYELLGVSVE----ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 42 ~~~~~~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d 102 (301)
.+..+...+.|+||.|+-+ -..+.||++|++||.+|||||||+ +.++|..+|+|||.|..
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-GREMFERVNKAYELLSS 1337 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHHHHH
Confidence 3566777889999999876 234789999999999999999974 67899999999999984
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.4e-06 Score=77.67 Aligned_cols=57 Identities=30% Similarity=0.587 Sum_probs=50.5
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHHh-hhhc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYK-VLMR 102 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~-~~~f~~i~~AY~-vL~d 102 (301)
-.-+.+|.||||..+|+.++++.||.+|++++|||...+++ .+.|++|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999988764 579999999999 7764
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.9e-06 Score=65.63 Aligned_cols=59 Identities=29% Similarity=0.353 Sum_probs=49.8
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~ 103 (301)
.+.++....-.||||+++++.+.||+|+|++....|||+.+.+ -.-..||||+++|...
T Consensus 50 ~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 50 EPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT 108 (112)
T ss_pred ccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence 4556666777899999999999999999999999999999876 2335699999999753
No 68
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=97.94 E-value=2.8e-06 Score=61.70 Aligned_cols=57 Identities=35% Similarity=0.763 Sum_probs=46.6
Q ss_pred ccccccccccCCCCCccccceeeeeCCcceEEEEEe--------eCCccccccccccCCCcceeec
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQ--------YGDSDQNIEVSVDSCPVNCIHW 199 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q--------~g~~~~~iq~aC~~Cpg~Cig~ 199 (301)
+++|...|+||+.|...+|..|.+++. |.+.++.. .......++.+...||++||.+
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 467889999999999999999999988 77766643 1225567889999999999864
No 69
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=97.88 E-value=9.4e-07 Score=62.97 Aligned_cols=55 Identities=35% Similarity=0.596 Sum_probs=41.2
Q ss_pred ccccccccCCCCCccccceeeeeCCcceEEEEEeeCC--ccccccccccCCCcceee
Q 022195 144 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD--SDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 144 vde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~--~~~~iq~aC~~Cpg~Cig 198 (301)
||.+.|++|+.|...+|.+|.+.+..|...+..|..+ ....+..+...||+.+|+
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~ 57 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIR 57 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence 4678999999999999999999999888888777765 345788999999999986
No 70
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=97.88 E-value=3.3e-06 Score=61.94 Aligned_cols=58 Identities=29% Similarity=0.647 Sum_probs=45.6
Q ss_pred ccccccccccCCCCCccccceeeeeCCcceEEE------EEeeCC-ccccccccccCCCcceeece
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDEATGCARV------KVQYGD-SDQNIEVSVDSCPVNCIHWV 200 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v------~~q~g~-~~~~iq~aC~~Cpg~Cig~~ 200 (301)
+++|.++|+||+.|...+|.+|.+.+. |.+++ ..+.++ .+..++.|...||+.||++.
T Consensus 3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~ 67 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE 67 (68)
T ss_pred EEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence 467889999999999999999999998 55533 333332 44678899999999999763
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00024 Score=59.92 Aligned_cols=69 Identities=26% Similarity=0.514 Sum_probs=54.7
Q ss_pred CCCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195 45 ASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQ-------KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~-------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
.....+||.++|.... ..+..++.-|.-..++.|||+... -+.+....||+||.+|.||-+|+.|=..+
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456789999976555 567777779999999999998532 24456789999999999999999986654
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.0027 Score=55.06 Aligned_cols=52 Identities=38% Similarity=0.583 Sum_probs=44.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHHHhhh
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVL 100 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~f~~i~~AY~vL 100 (301)
.+.|.+||+.+.++..+|+++|+++....|||+.... ..+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999986321 345678888888753
No 73
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=95.02 E-value=0.0052 Score=63.81 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred eeeccccEEEEEeCCCCCCCcEEecCCC-----CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 200 VDREELPVLEFLIQPQPKKGYGVFGGGW-----ERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 200 ~~~~e~k~LeV~Ip~G~~dG~~I~g~G~-----~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
....+.+.|+|.||+|+++|++|+..|. +.+|||++..+...+.+++|+.+|||-
T Consensus 691 ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~GDLyVvIkVKPHp~FrRdGdDL~~ 750 (871)
T TIGR03835 691 STTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHV 750 (871)
T ss_pred ceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCCCCEEEEEEEcCCCCeEEECCeEEE
Confidence 4556677999999999999999975541 224899999877666677777877776
No 74
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.01 Score=51.44 Aligned_cols=64 Identities=30% Similarity=0.497 Sum_probs=49.2
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhcccccccccccc
Q 022195 50 NYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 50 d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
+++.++|.++.+ ..+.++..|+.+++.+|||+....+ ...+..++.||.+|.||-+|..|=...
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal 74 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL 74 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 345556666554 3456899999999999999986532 236778999999999999999986544
No 75
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=94.90 E-value=0.03 Score=40.72 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=31.4
Q ss_pred cccceeeeeCCcceEEEEEeeCCccccccccccCCCcce
Q 022195 158 HASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNC 196 (301)
Q Consensus 158 ~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~C 196 (301)
..+.+|..|.|.|.....++.+++..+++.+|+.|.|.-
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G 51 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTG 51 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCccee
Confidence 455799999999999999997778899999999999843
No 76
>PRK14300 chaperone protein DnaJ; Provisional
Probab=94.75 E-value=0.065 Score=52.00 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~ 238 (301)
..++|.||+|+++|+.|.+.|. ...||+||..+
T Consensus 292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~ 331 (372)
T PRK14300 292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIH 331 (372)
T ss_pred CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 5799999999999999975552 23478887663
No 77
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.66 E-value=0.036 Score=55.14 Aligned_cols=42 Identities=33% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcc---------hHHHHHHHHHHhhh
Q 022195 59 VEANGQEIKEAYRKLQKKYHPDIAGQKG---------HEHTLLLNEAYKVL 100 (301)
Q Consensus 59 ~~as~~eIk~ayr~l~~~~HPD~~~~~~---------~~~f~~i~~AY~vL 100 (301)
.-.+.++||++|||..|..||||....+ ++.|-.|++||...
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 3368999999999999999999987642 23455556666543
No 78
>PRK14284 chaperone protein DnaJ; Provisional
Probab=94.63 E-value=0.069 Score=52.16 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~ 238 (301)
..|+|.||+|+.+|+.|.+.|.+ ..||+||...
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~ 345 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRIS 345 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEE
Confidence 57899999999999999755522 3478887753
No 79
>PRK14285 chaperone protein DnaJ; Provisional
Probab=94.54 E-value=0.082 Score=51.16 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=24.5
Q ss_pred cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
..|+|.||+|+.+|+.|.+.|.+ ..||+||..
T Consensus 293 ~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~ 331 (365)
T PRK14285 293 KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILII 331 (365)
T ss_pred CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEE
Confidence 47899999999999999766532 237777765
No 80
>PRK14295 chaperone protein DnaJ; Provisional
Probab=94.45 E-value=0.081 Score=51.63 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred cEEEEEeCCCCCCCcEEecCCCC------CCCceehhh
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWE------RPANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~------~~~~vfv~~ 237 (301)
..|+|.||+|+.+|+.|.+.|.+ ..||+||..
T Consensus 313 ~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~ 350 (389)
T PRK14295 313 PPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTV 350 (389)
T ss_pred CEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEE
Confidence 47899999999999999766643 347887765
No 81
>PRK14282 chaperone protein DnaJ; Provisional
Probab=94.36 E-value=0.1 Score=50.58 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=26.0
Q ss_pred ccEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195 205 LPVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK 238 (301)
Q Consensus 205 ~k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~ 238 (301)
-..|+|.||+|+.+|+.|.+.|. +..||+||...
T Consensus 302 G~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~ 342 (369)
T PRK14282 302 GGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVH 342 (369)
T ss_pred CcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 35689999999999999975552 23478888773
No 82
>PRK14278 chaperone protein DnaJ; Provisional
Probab=94.34 E-value=0.095 Score=50.97 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=24.9
Q ss_pred cEEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
..++|.||+|+++|+.|.+.|.+ ..||+||..
T Consensus 290 ~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~ 328 (378)
T PRK14278 290 GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHV 328 (378)
T ss_pred CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEE
Confidence 56899999999999999766532 347888765
No 83
>PRK14291 chaperone protein DnaJ; Provisional
Probab=94.23 E-value=0.099 Score=50.89 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=26.6
Q ss_pred cccEEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195 204 ELPVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA 239 (301)
Q Consensus 204 e~k~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~ 239 (301)
.-..|+|.||+|+++|++|.+.|.+ ..||+||..++
T Consensus 300 dG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V 342 (382)
T PRK14291 300 DGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHI 342 (382)
T ss_pred CCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence 3356899999999999999755522 34788887643
No 84
>PRK14301 chaperone protein DnaJ; Provisional
Probab=93.87 E-value=0.11 Score=50.34 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195 208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA 239 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~ 239 (301)
++|.||+|+++|+.|.+.|.| ..||+||...+
T Consensus 292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V 330 (373)
T PRK14301 292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSV 330 (373)
T ss_pred EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEE
Confidence 899999999999999766533 34788776643
No 85
>PRK14290 chaperone protein DnaJ; Provisional
Probab=93.80 E-value=0.13 Score=49.70 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=25.0
Q ss_pred cEEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~ 238 (301)
..++|.||+|++.|+.|.+.|. ...||+||..+
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~ 335 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRIN 335 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 3589999999999999975552 23578877663
No 86
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.15 Score=49.41 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCCcEEecCCCCCC-------CceehhhH
Q 022195 208 LEFLIQPQPKKGYGVFGGGWERP-------ANVFMAAK 238 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~~~-------~~vfv~~~ 238 (301)
++|.||+|...|..+.++|.+-| ||+||...
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~ 329 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVK 329 (371)
T ss_pred EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEE
Confidence 89999999999999976664333 78887663
No 87
>PRK14298 chaperone protein DnaJ; Provisional
Probab=93.67 E-value=0.14 Score=49.71 Aligned_cols=30 Identities=7% Similarity=-0.028 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195 208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
++|.||+|+..|+.+.+.|.+ ..||+||..
T Consensus 293 i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~ 329 (377)
T PRK14298 293 VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKV 329 (377)
T ss_pred EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEE
Confidence 799999999999998766532 247888876
No 88
>PRK14281 chaperone protein DnaJ; Provisional
Probab=93.65 E-value=0.14 Score=50.23 Aligned_cols=31 Identities=6% Similarity=0.032 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195 208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK 238 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~ 238 (301)
++|.||+|+.+|+.+.+.|.| ..||+||..+
T Consensus 314 i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~ 351 (397)
T PRK14281 314 VKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVN 351 (397)
T ss_pred EEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 799999999999999766533 2378888753
No 89
>PRK14286 chaperone protein DnaJ; Provisional
Probab=93.51 E-value=0.16 Score=49.37 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=24.2
Q ss_pred cEEEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~ 237 (301)
..|+|.||+|+..|+.+.+.|.+. .||+||..
T Consensus 297 ~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~ 335 (372)
T PRK14286 297 KKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIV 335 (372)
T ss_pred CEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEE
Confidence 468999999999999997665332 36777665
No 90
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.27 E-value=0.14 Score=42.19 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 103 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~ 103 (301)
.+.-..-..||||++..+.++|.+.|.+|-...+|++++..- .=..|..|.+.|..+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY--LQSKV~rAKErl~~E 110 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY--LQSKVFRAKERLEQE 110 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH--HHHHHHHHHHHHHHH
Confidence 455556788999999999999999999999999999886531 113477788877644
No 91
>PRK14279 chaperone protein DnaJ; Provisional
Probab=93.06 E-value=0.19 Score=49.08 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCCCcEEecCCCC------CCCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE------RPANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~------~~~~vfv~~ 237 (301)
.++|.||+|+++|+.|.+.|.+ ..||+||..
T Consensus 320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~ 356 (392)
T PRK14279 320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTV 356 (392)
T ss_pred eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEE
Confidence 4799999999999999766633 347877765
No 92
>PRK14294 chaperone protein DnaJ; Provisional
Probab=93.01 E-value=0.22 Score=48.24 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=24.5
Q ss_pred EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022195 208 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA 239 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~~ 239 (301)
++|.||+|+.+|++|.+.|.+ ..||+||...+
T Consensus 292 ~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v 330 (366)
T PRK14294 292 RELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEV 330 (366)
T ss_pred EEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence 599999999999999755522 35788887633
No 93
>PRK14288 chaperone protein DnaJ; Provisional
Probab=92.92 E-value=0.26 Score=47.81 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCCCcEEecCCCCC-------CCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~~ 238 (301)
..|+|.||+|+..|+.+.+.|.|- -||+||..+
T Consensus 285 ~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~ 324 (369)
T PRK14288 285 DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQ 324 (369)
T ss_pred CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence 358999999999999987555332 278888763
No 94
>PRK14280 chaperone protein DnaJ; Provisional
Probab=92.82 E-value=0.22 Score=48.41 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
.++|.||+|+.+|+.|.+.|.+ ..||+||..
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~ 331 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVV 331 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEE
Confidence 3799999999999998755532 347887765
No 95
>PRK14297 chaperone protein DnaJ; Provisional
Probab=92.82 E-value=0.21 Score=48.61 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
.++|.||+|+.+|+.+.+.|.+ ..||+||..
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~ 336 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTV 336 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEE
Confidence 3799999999999998755532 347888765
No 96
>PRK14289 chaperone protein DnaJ; Provisional
Probab=92.68 E-value=0.22 Score=48.58 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~ 238 (301)
.++|.||+|+++|++|.+.|.+ ..||+||..+
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~ 343 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVS 343 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEE
Confidence 4799999999999999765532 3578877663
No 97
>PRK14276 chaperone protein DnaJ; Provisional
Probab=92.68 E-value=0.24 Score=48.20 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~ 238 (301)
.++|.||+|+++|+.|.+.|. ...||+||...
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~ 335 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVN 335 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence 379999999999999875552 23578887753
No 98
>PRK10767 chaperone protein DnaJ; Provisional
Probab=92.56 E-value=0.25 Score=47.86 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCCCcEEecCCC-------CCCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~ 238 (301)
.++|.||+|+..|+.+.+.|. +..||+||...
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~ 327 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVV 327 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEE
Confidence 589999999999999875552 23488888763
No 99
>PRK14277 chaperone protein DnaJ; Provisional
Probab=92.49 E-value=0.26 Score=48.02 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022195 208 LEFLIQPQPKKGYGVFGGGWER-------PANVFMAA 237 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~~-------~~~vfv~~ 237 (301)
++|.||+|+..|+.|.+.|.|. .||+||..
T Consensus 307 ~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~ 343 (386)
T PRK14277 307 VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKV 343 (386)
T ss_pred EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEE
Confidence 7999999999999997666443 36777665
No 100
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=92.40 E-value=0.29 Score=47.05 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=24.7
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~ 238 (301)
.++|.||+|+.+|+.+.+.|.+ ..||+||...
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~ 332 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVK 332 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEE
Confidence 5899999999999998755532 3578887763
No 101
>PRK14287 chaperone protein DnaJ; Provisional
Probab=91.78 E-value=0.35 Score=46.90 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCCCcEEecCCC-------CCCCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~ 237 (301)
.++|.||+|+.+|+.|.+.|. +..||+||..
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~ 326 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQV 326 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEE
Confidence 379999999999999875552 2348888876
No 102
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=91.67 E-value=0.21 Score=40.23 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=32.1
Q ss_pred cccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195 149 CIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 194 (301)
Q Consensus 149 CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg 194 (301)
-..|..|.+.+..+|..|.|.|...... ++ .++++..|+.|.|
T Consensus 41 ~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~g-~~q~~~~C~~C~G 83 (111)
T PLN03165 41 TQPCFPCSGTGAQVCRFCVGSGNVTVEL--GG-GEKEVSKCINCDG 83 (111)
T ss_pred CCCCCCCCCCCCcCCCCCcCcCeEEEEe--CC-cEEEEEECCCCCC
Confidence 4567777777778999999999766433 33 3567889999988
No 103
>PRK14283 chaperone protein DnaJ; Provisional
Probab=91.47 E-value=0.45 Score=46.21 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-------~~~~vfv~~~ 238 (301)
.++|.||+|+++|+.|.+.|.| ..||+||...
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~ 335 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVK 335 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 6899999999999999766533 2378887663
No 104
>PRK14296 chaperone protein DnaJ; Provisional
Probab=91.46 E-value=0.42 Score=46.39 Aligned_cols=31 Identities=0% Similarity=0.004 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCCcEEecCCCCCC--------CceehhhH
Q 022195 208 LEFLIQPQPKKGYGVFGGGWERP--------ANVFMAAK 238 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~~~--------~~vfv~~~ 238 (301)
++|.||+++..|+.+.+.|.|-| ||+||..+
T Consensus 302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~ 340 (372)
T PRK14296 302 IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVN 340 (372)
T ss_pred EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEE
Confidence 79999999999999976664433 67777653
No 105
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=90.07 E-value=0.081 Score=30.20 Aligned_cols=18 Identities=33% Similarity=0.890 Sum_probs=15.2
Q ss_pred ccccccccccCCCCCccc
Q 022195 142 LFVDENACIGCRECVHHA 159 (301)
Q Consensus 142 ifvde~~CigC~~C~g~a 159 (301)
+++|.++|+||+.|....
T Consensus 3 ~~iD~~rCiGC~~C~~AC 20 (22)
T PF12797_consen 3 MVIDLERCIGCGACEVAC 20 (22)
T ss_pred eEEccccccCchhHHHhh
Confidence 678999999999998544
No 106
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=89.84 E-value=0.27 Score=43.17 Aligned_cols=53 Identities=11% Similarity=-0.114 Sum_probs=34.7
Q ss_pred cceeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCCC
Q 022195 160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW 227 (301)
Q Consensus 160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G~ 227 (301)
..+|..|.|.|.... -...|+.|+| .+.+...+.+.+.+ .|+.+|++|...-+
T Consensus 99 ~~~C~~C~G~G~~i~----------~~~~C~~C~G----~G~v~~~~~~~~k~-~g~~~g~~it~~~~ 151 (186)
T TIGR02642 99 SCKCPRCRGTGLIQR----------RQRECDTCAG----TGRFRPTVEDLLKS-FGVDSGAAIVLKDN 151 (186)
T ss_pred CCcCCCCCCeeEEec----------CCCCCCCCCC----ccEEeeeEEEEEEe-eeccCCceeeHHHh
Confidence 345666667775322 1145666665 45566666778888 99999999987654
No 107
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=89.58 E-value=0.85 Score=45.07 Aligned_cols=32 Identities=16% Similarity=0.048 Sum_probs=23.6
Q ss_pred cEEEEEeCCC--CCCCcEEecCCCC--------CCCceehhh
Q 022195 206 PVLEFLIQPQ--PKKGYGVFGGGWE--------RPANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G--~~dG~~I~g~G~~--------~~~~vfv~~ 237 (301)
..|+|.||+| +..|+.+.+.|.| .-||+||..
T Consensus 301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~ 342 (421)
T PTZ00037 301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTF 342 (421)
T ss_pred CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEE
Confidence 4589999999 9999988655522 237888766
No 108
>PRK14293 chaperone protein DnaJ; Provisional
Probab=89.32 E-value=0.82 Score=44.39 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCCcEEecCCCC--------CCCceehhh
Q 022195 208 LEFLIQPQPKKGYGVFGGGWE--------RPANVFMAA 237 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~--------~~~~vfv~~ 237 (301)
++|.||+|++.|+++.+.|.| .-||+||..
T Consensus 295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~ 332 (374)
T PRK14293 295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITV 332 (374)
T ss_pred EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEE
Confidence 789999999999998765522 237888776
No 109
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=88.32 E-value=0.14 Score=37.19 Aligned_cols=54 Identities=24% Similarity=0.434 Sum_probs=43.1
Q ss_pred cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig 198 (301)
+++.+..+|++-+.|+...|.+|...+. |.. ...+.....+..++..||.+++.
T Consensus 7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~ 60 (64)
T PF06902_consen 7 TVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALS 60 (64)
T ss_pred EEEECcCcccchhhhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcE
Confidence 5667889999999999999999999887 654 33344567788999999987764
No 110
>PRK14292 chaperone protein DnaJ; Provisional
Probab=87.80 E-value=1.2 Score=43.10 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=24.0
Q ss_pred EEEEeCCCCCCCcEEecCCC-------CCCCceehhhHH
Q 022195 208 LEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAKA 239 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~-------~~~~~vfv~~~~ 239 (301)
.+|.||+|+++|+.+.+.|. ..+||+||..+.
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v 328 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEI 328 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence 47999999999999875552 235888877643
No 111
>PF13446 RPT: A repeated domain in UCH-protein
Probab=85.20 E-value=1.9 Score=30.61 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=33.0
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d 102 (301)
.+.|++|||+++.+.+.|-.+|+.... -.| .....+.+|..++.+
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P--------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP--------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh--------HhHHHHHHHHHHHHH
Confidence 457999999999999999999998877 112 223345666666653
No 112
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=1.6 Score=41.43 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195 60 EANGQEIKEAYRKLQKKYHPDIAGQ------KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 60 ~as~~eIk~ayr~l~~~~HPD~~~~------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
-++..+|..+|+..++..||++... ...+.++.|.+||.+|++...|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3577889999999999999998742 34568999999999999876666665543
No 113
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=80.27 E-value=3.3 Score=36.62 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhh
Q 022195 58 SVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (301)
Q Consensus 58 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~ 101 (301)
+++||.+||.+|+.++..+|--| .+.-..|..||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHH
Confidence 57899999999999999999333 345567999999765
No 114
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=79.96 E-value=0.63 Score=41.44 Aligned_cols=57 Identities=21% Similarity=0.509 Sum_probs=36.9
Q ss_pred ccccccccccCCCCCccccc-------------eeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeeccccEE
Q 022195 142 LFVDENACIGCRECVHHASN-------------TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVL 208 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~-------------tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e~k~L 208 (301)
+.+|.++||||+-|....|- .|++|-... ..| ....-...||++++..+.+++....
T Consensus 95 V~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt~C~~ri------~~g----~~PaCV~~CP~~A~~fG~~~d~~~~ 164 (203)
T COG0437 95 VLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCTFCVDRV------AVG----KLPACVEACPTGALIFGDIDDPKSK 164 (203)
T ss_pred EEecCCcccCchHHHhhCCCCCceeCcccCcccccCcchhhH------hcC----CCCcccccCCcccccccchhhcchh
Confidence 44678899999999876552 223331110 001 2335578999999999988886554
No 115
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=75.78 E-value=0.48 Score=27.50 Aligned_cols=19 Identities=37% Similarity=1.064 Sum_probs=15.6
Q ss_pred ccccccccccCCCCCcccc
Q 022195 142 LFVDENACIGCRECVHHAS 160 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap 160 (301)
+.+|+++|++|+.|....|
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp 20 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCP 20 (24)
T ss_pred cEEChhhCcChhHHHHhcc
Confidence 3578899999999987666
No 116
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=70.73 E-value=2.4 Score=36.50 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=38.0
Q ss_pred CcccccccccccCCCCCcccccee----eeeCCcceEEEEEeeCCccccc--cccccCCCcceeece
Q 022195 140 EALFVDENACIGCRECVHHASNTF----VMDEATGCARVKVQYGDSDQNI--EVSVDSCPVNCIHWV 200 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~tf----~~c~g~G~~~v~~q~g~~~~~i--q~aC~~Cpg~Cig~~ 200 (301)
.-+-..+++||.|..|...+|..- .-....|..+.++-..+|-.-+ .-.-+.||++||..+
T Consensus 104 rRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiveg 170 (212)
T KOG3256|consen 104 RRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 170 (212)
T ss_pred hcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceecc
Confidence 344456889999999998887532 2223446666665555543222 123457899998665
No 117
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=68.94 E-value=20 Score=33.70 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=18.7
Q ss_pred CcccccccccccCCCCCcccccee
Q 022195 140 EALFVDENACIGCRECVHHASNTF 163 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~tf 163 (301)
....++.+.|++|+.|...+|...
T Consensus 240 ~~p~id~~~Ci~C~~C~~~CP~~a 263 (312)
T PRK14028 240 DKPVIDHSKCIMCRKCWLYCPDDA 263 (312)
T ss_pred cceEECcccCcCcccccccCChhh
Confidence 344567889999999999888643
No 118
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=66.44 E-value=12 Score=30.04 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHhhhhccc
Q 022195 60 EANGQEIKEAYRKLQKKYHPDIAGQK------GHEHTLLLNEAYKVLMRGD 104 (301)
Q Consensus 60 ~as~~eIk~ayr~l~~~~HPD~~~~~------~~~~f~~i~~AY~vL~d~~ 104 (301)
..+..+++.|.|.+-++.|||..... .++-++.|+.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999976532 2345677777777776543
No 119
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=65.57 E-value=1.3 Score=38.76 Aligned_cols=63 Identities=24% Similarity=0.546 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeecc
Q 022195 139 PEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREE 204 (301)
Q Consensus 139 ~~difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e 204 (301)
..-.++++..|+||..|....|.--.+-...+.-.++ .+.-.....-...||++||......+
T Consensus 107 ~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~---~dlCTGC~lCva~CPtdci~m~~~~~ 169 (198)
T COG2878 107 RMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVI---ADLCTGCDLCVAPCPTDCIEMQPVAE 169 (198)
T ss_pred ceeeEecchhccccHHHHHhCChhhhhccchhHHHHH---HHHhcCCCcccCCCCCCceeeeeccc
Confidence 3456788999999999987655311110000000000 00000023445678999998877766
No 120
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=62.03 E-value=6.5 Score=41.57 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=24.1
Q ss_pred cccccccCCCcceeeceeeccccEEEEEeC
Q 022195 184 NIEVSVDSCPVNCIHWVDREELPVLEFLIQ 213 (301)
Q Consensus 184 ~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip 213 (301)
.....|..|.++|.-..-....++|.|.-.
T Consensus 263 ktkTvC~yCGvGCsf~vwtkgreilkv~p~ 292 (978)
T COG3383 263 KTKTVCTYCGVGCSFEVWTKGREILKVQPD 292 (978)
T ss_pred ccceeccccCCceeEEEEecCceEEEeccC
Confidence 455779999999998888888888877543
No 121
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=61.20 E-value=17 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCCCcEEecCCC--------CCCCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGW--------ERPANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~--------~~~~~vfv~~~ 238 (301)
+.++|.||+|..+|+.+...|. ...||+||..+
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~ 67 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFE 67 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEE
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEE
Confidence 6889999999999999875552 25678888763
No 122
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=58.47 E-value=7.1 Score=43.43 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=26.6
Q ss_pred CcccccccccccCCCCCc--cccceeeeeCCcceEEEEE
Q 022195 140 EALFVDENACIGCRECVH--HASNTFVMDEATGCARVKV 176 (301)
Q Consensus 140 ~difvde~~CigC~~C~g--~ap~tf~~c~g~G~~~v~~ 176 (301)
.-++|++..|.||+.|.. .++.+-......|..+.+.
T Consensus 650 ~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Id 688 (1186)
T PRK13029 650 RRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKIN 688 (1186)
T ss_pred ccEEEcccccCCchhhhhccCCceeeeccccCCccEEEC
Confidence 367899999999999985 3566655565567655543
No 123
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=58.12 E-value=8.7 Score=33.14 Aligned_cols=21 Identities=48% Similarity=0.944 Sum_probs=17.3
Q ss_pred CcccccccccccCCCCCcccc
Q 022195 140 EALFVDENACIGCRECVHHAS 160 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap 160 (301)
..+.++.++|+||+.|.-..|
T Consensus 75 ~~v~V~~ekCiGC~~C~~aCP 95 (165)
T COG1142 75 GAVQVDEEKCIGCKLCVVACP 95 (165)
T ss_pred CceEEchhhccCcchhhhcCC
Confidence 356788999999999997665
No 124
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=57.37 E-value=7.9 Score=25.97 Aligned_cols=20 Identities=40% Similarity=1.052 Sum_probs=7.9
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.+|.+.|++|+.|....|.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 56788999999999988876
No 125
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=55.82 E-value=8.4 Score=42.84 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCc--cccceeeeeCCcceEEEEE
Q 022195 141 ALFVDENACIGCRECVH--HASNTFVMDEATGCARVKV 176 (301)
Q Consensus 141 difvde~~CigC~~C~g--~ap~tf~~c~g~G~~~v~~ 176 (301)
-++|++..|.||+.|.. .+|.+-......|..+.+.
T Consensus 637 r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Id 674 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRID 674 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCCccEEEC
Confidence 68899999999999985 3566555565567655443
No 126
>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2VPZ_A 2VPY_A 2VPW_A 2VPX_A 2NYA_A 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 ....
Probab=53.80 E-value=16 Score=24.88 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=21.7
Q ss_pred cccccccCCCcceeeceeeccccEEEEEeCCC
Q 022195 184 NIEVSVDSCPVNCIHWVDREELPVLEFLIQPQ 215 (301)
Q Consensus 184 ~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G 215 (301)
.+..+|+.|+..|.-...++..+++.|.-.+.
T Consensus 3 ~~~t~C~~C~~gC~i~~~v~~g~i~~v~g~~~ 34 (55)
T PF04879_consen 3 TVPTVCPYCSSGCGIDVYVKDGKIVKVEGDPD 34 (55)
T ss_dssp EEEEE-SSCTT--EEEEEEETTEEEEEEE-TT
T ss_pred EEeeECcCCcCCCcEEEEEecCceEEEECCCC
Confidence 46788999999998888888877777766543
No 127
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=52.85 E-value=9.8 Score=42.36 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=25.2
Q ss_pred cccccccccccCCCCCc--cccceeeeeCCcceEEEEE
Q 022195 141 ALFVDENACIGCRECVH--HASNTFVMDEATGCARVKV 176 (301)
Q Consensus 141 difvde~~CigC~~C~g--~ap~tf~~c~g~G~~~v~~ 176 (301)
.++|++..|.||+.|.. .+|.+-......|..+.+.
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id 660 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRID 660 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcceeeccccCCccEEEC
Confidence 68899999999999985 3555555555556554443
No 128
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=52.58 E-value=11 Score=29.34 Aligned_cols=21 Identities=33% Similarity=0.784 Sum_probs=17.6
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
.+.++...|++|+.|...+|.
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~ 30 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPA 30 (103)
T ss_pred CeEECcccccCCcchhhhcCh
Confidence 455688899999999988875
No 129
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=52.57 E-value=13 Score=28.85 Aligned_cols=64 Identities=28% Similarity=0.498 Sum_probs=36.5
Q ss_pred CCCcccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeec
Q 022195 138 RPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDRE 203 (301)
Q Consensus 138 r~~difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~ 203 (301)
+.....++.+.|+.|..|-...|+.+......|....+. . +.-.-...-...||.+||-.+.++
T Consensus 26 rv~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~id-Y-dyCKGCGICa~vCP~kaI~Mv~E~ 89 (91)
T COG1144 26 RVFRPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRID-Y-DYCKGCGICANVCPVKAIEMVREE 89 (91)
T ss_pred EEEeeEEcccccccCceeEEECCchheeeccCCccceeE-c-ccccCceechhhCChhheEeEeec
Confidence 344556789999999999999987643333222211000 0 000112344567788888766543
No 130
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=51.68 E-value=14 Score=30.51 Aligned_cols=61 Identities=23% Similarity=0.299 Sum_probs=33.0
Q ss_pred ccccccccccCC-----CCCccccceeeeeCCcc-eEEEEEeeCCccccccccccCCCcceeeceeecc
Q 022195 142 LFVDENACIGCR-----ECVHHASNTFVMDEATG-CARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREE 204 (301)
Q Consensus 142 ifvde~~CigC~-----~C~g~ap~tf~~c~g~G-~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e 204 (301)
++++.+.|++|+ .|...+|.....-+..+ ....+. ...-.........||.+++......+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id--~~~C~~Cg~Cv~~CP~~AI~~~~~~~ 69 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIE--PDMCWECYSCVKACPQGAIDVRGYAD 69 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecC--chhCccHHHHHHhCCcCceEEECccc
Confidence 467889999999 99988886432222212 111111 11111233445566777776654444
No 131
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=51.10 E-value=2.5 Score=24.32 Aligned_cols=19 Identities=37% Similarity=0.955 Sum_probs=13.9
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
.++.+.|++|+.|....|.
T Consensus 2 ~id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EEETTTSSS-THHHHHSTT
T ss_pred EEchHHCCCcchhhhhccc
Confidence 4677899999999876654
No 132
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=49.92 E-value=9.2 Score=34.09 Aligned_cols=24 Identities=33% Similarity=0.819 Sum_probs=18.7
Q ss_pred CCcccccccccccCCCCCccccce
Q 022195 139 PEALFVDENACIGCRECVHHASNT 162 (301)
Q Consensus 139 ~~difvde~~CigC~~C~g~ap~t 162 (301)
.-.+++|.++|+||..|.-.....
T Consensus 10 ~~~~~~D~~rCiGC~aC~~AC~~~ 33 (203)
T COG0437 10 RYAFVIDSSRCIGCKACVVACKEE 33 (203)
T ss_pred eeEEEEecccccCcHHHHHHHHHh
Confidence 346788999999999998665543
No 133
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=49.45 E-value=2.8 Score=28.50 Aligned_cols=15 Identities=40% Similarity=0.992 Sum_probs=9.5
Q ss_pred ccccCCCCCccccce
Q 022195 148 ACIGCRECVHHASNT 162 (301)
Q Consensus 148 ~CigC~~C~g~ap~t 162 (301)
+|++|+.|+...|..
T Consensus 1 kCi~Cg~C~~~CP~~ 15 (55)
T PF13187_consen 1 KCIGCGRCVEACPVG 15 (55)
T ss_dssp C--TTTHHHHHSTTT
T ss_pred CCCCcchHHHHCCcc
Confidence 478888888777754
No 134
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=48.98 E-value=12 Score=19.74 Aligned_cols=15 Identities=40% Similarity=1.061 Sum_probs=11.6
Q ss_pred cccccCCCCCccccc
Q 022195 147 NACIGCRECVHHASN 161 (301)
Q Consensus 147 ~~CigC~~C~g~ap~ 161 (301)
+.|++|+.|....|.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 469999999876653
No 135
>PRK14299 chaperone protein DnaJ; Provisional
Probab=48.72 E-value=20 Score=33.53 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCCcEEecCCCCCC------Cceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWERP------ANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~~~------~~vfv~~ 237 (301)
.++|.||+|+..|+.+.++|.|.| ||+||..
T Consensus 228 ~~~v~ip~~~~~g~~~rl~g~G~p~~~~~~GDL~v~~ 264 (291)
T PRK14299 228 PVEVTIPPRTQAGRKLRLKGKGWPRGPAGRGDQYAEV 264 (291)
T ss_pred CEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCEEEEE
Confidence 489999999999999987765443 6777665
No 136
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=47.88 E-value=21 Score=33.59 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=23.7
Q ss_pred EEEEEeCCCCCCCcEEecCCCCC-----CCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWER-----PANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~~-----~~~vfv~~ 237 (301)
.++|.||+|+..|++|.+.|.|. .||+||..
T Consensus 236 ~v~v~ip~g~~~g~~~ri~g~G~p~~~~~GdL~v~~ 271 (306)
T PRK10266 236 SILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVL 271 (306)
T ss_pred cEEEEeCCCcCCCCEEEECCCCCCCCCCCCCEEEEE
Confidence 47999999999999997666443 36776655
No 137
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=47.04 E-value=7.4 Score=27.45 Aligned_cols=19 Identities=42% Similarity=1.137 Sum_probs=11.6
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
.+|.++|++|+.|....|.
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~ 20 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPD 20 (59)
T ss_dssp EE-TTT----SCCCHHCCC
T ss_pred EECcccccChhhHHhHcCc
Confidence 3688999999999988884
No 138
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=46.12 E-value=59 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=27.6
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG 83 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~ 83 (301)
+.+.-+++|++|-|+..||+.|-++..++..--..|
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 455678899999999999999987777776443333
No 139
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=45.75 E-value=5.7 Score=32.81 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=18.9
Q ss_pred CcccccccccccCCCCCcccccee
Q 022195 140 EALFVDENACIGCRECVHHASNTF 163 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~tf 163 (301)
..+.++.+.|++|+.|...+|...
T Consensus 52 ~~p~~d~~~Ci~C~~C~~~CP~~a 75 (133)
T PRK09625 52 EKPVHNNEICINCFNCWVYCPDAA 75 (133)
T ss_pred eeEEEehhHCcChhhHHHhCCHhh
Confidence 345567889999999998888654
No 140
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=43.73 E-value=6.7 Score=36.73 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=33.5
Q ss_pred cccccccccccCCCCCccccce-eeeeCCcceEEEEEeeCC-cccccccc-ccCCCcceeeceeecc
Q 022195 141 ALFVDENACIGCRECVHHASNT-FVMDEATGCARVKVQYGD-SDQNIEVS-VDSCPVNCIHWVDREE 204 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~t-f~~c~g~G~~~v~~q~g~-~~~~iq~a-C~~Cpg~Cig~~~~~e 204 (301)
.+.++.+.|++|+.|...+|.. ..+....+....-.--.+ ..+-..-+ ...||.+++..+..++
T Consensus 118 ~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~ 184 (283)
T TIGR01582 118 IVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKED 184 (283)
T ss_pred cEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHH
Confidence 3567888999999999877642 222222111100000000 00001123 4889999998886654
No 141
>COG1146 Ferredoxin [Energy production and conversion]
Probab=43.40 E-value=29 Score=24.77 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=17.4
Q ss_pred cccccccccCCCCCccccce-eeee
Q 022195 143 FVDENACIGCRECVHHASNT-FVMD 166 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~t-f~~c 166 (301)
.++.+.|++|+.|....|.. +...
T Consensus 4 ~Id~~~C~~c~~C~~~CP~~~~~~~ 28 (68)
T COG1146 4 VIDYDKCIGCGICVEVCPAGVFDLG 28 (68)
T ss_pred EECchhcCCCChheeccChhhEEec
Confidence 35677899999999888864 3443
No 142
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=42.75 E-value=1.1e+02 Score=22.99 Aligned_cols=55 Identities=18% Similarity=0.083 Sum_probs=37.0
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHH----HHHHHHHhhhhc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHT----LLLNEAYKVLMR 102 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f----~~i~~AY~vL~d 102 (301)
+.+--.+.|+.|-|+.+||..|-.+..++..=-..|.. ..+.| .+|..+-.-|.|
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555677899999999999999888888765555443 23344 345555555554
No 143
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=42.69 E-value=16 Score=29.28 Aligned_cols=22 Identities=32% Similarity=0.839 Sum_probs=18.1
Q ss_pred cccccccccccCCCCCccccce
Q 022195 141 ALFVDENACIGCRECVHHASNT 162 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~t 162 (301)
.+.++.+.|++|+.|...+|..
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ 57 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAG 57 (120)
T ss_pred eEEECcccCcCcccHHHHCCcc
Confidence 4567888999999999888753
No 144
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=42.51 E-value=26 Score=27.54 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=17.2
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
...++...|++|+.|....|.
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~ 65 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPE 65 (105)
T ss_pred eEEECcccCccccchhhhCCH
Confidence 455678899999999988775
No 145
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=41.10 E-value=23 Score=27.96 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=16.5
Q ss_pred cccccccccCCCCCccccce
Q 022195 143 FVDENACIGCRECVHHASNT 162 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~t 162 (301)
.++.+.|++|+.|....|..
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ 66 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEP 66 (105)
T ss_pred EEChhHCcChhhHHhhCCHh
Confidence 46788999999999887754
No 146
>PRK13409 putative ATPase RIL; Provisional
Probab=40.46 E-value=14 Score=38.16 Aligned_cols=20 Identities=35% Similarity=0.853 Sum_probs=17.0
Q ss_pred cccccccccccCCCCCcccc
Q 022195 141 ALFVDENACIGCRECVHHAS 160 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap 160 (301)
..++.++.|+||+-|+..+|
T Consensus 43 ~~~~~e~~c~~c~~c~~~cp 62 (590)
T PRK13409 43 KPVISEELCIGCGICVKKCP 62 (590)
T ss_pred CceeeHhhccccccccccCC
Confidence 45678999999999998776
No 147
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=39.36 E-value=9.6 Score=34.30 Aligned_cols=28 Identities=32% Similarity=0.716 Sum_probs=21.2
Q ss_pred cccccccccccCCCCCccccceeeeeCC
Q 022195 141 ALFVDENACIGCRECVHHASNTFVMDEA 168 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf~~c~g 168 (301)
.+++|.++|++|+.|....+.......+
T Consensus 40 ~~~iD~~rCigC~~C~~aC~~~~~~~~~ 67 (225)
T TIGR03149 40 GMVHDETACIGCTACMDACREVNKVPEG 67 (225)
T ss_pred EEEEEHHHCcCcHHHHHHhhHHhCCCCC
Confidence 5778999999999999888765433333
No 148
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=39.16 E-value=16 Score=32.13 Aligned_cols=21 Identities=38% Similarity=1.070 Sum_probs=17.3
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
-++++.+.|++|+.|...+|.
T Consensus 108 ~~~id~~~Ci~Cg~Cv~aCp~ 128 (191)
T PRK05113 108 VAFIDEDNCIGCTKCIQACPV 128 (191)
T ss_pred eeEEeCCcCCCCChhhhhCCH
Confidence 356788999999999988773
No 149
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=38.01 E-value=20 Score=17.85 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhh
Q 022195 89 HTLLLNEAYKVLM 101 (301)
Q Consensus 89 ~f~~i~~AY~vL~ 101 (301)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888774
No 150
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=37.88 E-value=23 Score=30.83 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=17.8
Q ss_pred cccccccccccCCCCCccccce
Q 022195 141 ALFVDENACIGCRECVHHASNT 162 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~t 162 (301)
.+.++.+.|++|+.|...+|..
T Consensus 56 ~i~~~~~kCi~Cg~C~~aCP~~ 77 (183)
T TIGR00403 56 RIHFEFDKCIACEVCVRVCPIN 77 (183)
T ss_pred eEEeCcccCcCcCChhhhCCCC
Confidence 3556788999999999888864
No 151
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=37.58 E-value=19 Score=35.33 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=17.6
Q ss_pred cccccccccccCCCCCcccccee
Q 022195 141 ALFVDENACIGCRECVHHASNTF 163 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf 163 (301)
.+.++.+.|++|+.|...+|...
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~a 26 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDA 26 (411)
T ss_pred eeeeCcccCcCccchhhhCCccc
Confidence 45677888999999988877543
No 152
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=37.36 E-value=21 Score=36.99 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=21.1
Q ss_pred CcccccccccccCCCCC--ccccceeeeeC
Q 022195 140 EALFVDENACIGCRECV--HHASNTFVMDE 167 (301)
Q Consensus 140 ~difvde~~CigC~~C~--g~ap~tf~~c~ 167 (301)
..++||++.|.||+.|. ..+|..+....
T Consensus 570 ~~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~ 599 (640)
T COG4231 570 PKYFVDEEKCTGCGDCIVLSGCPSIEPDPT 599 (640)
T ss_pred CCceechhhcCCcHHHHhhcCCceEeecCC
Confidence 46889999999999998 44666555444
No 153
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=37.22 E-value=15 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=15.8
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
++.....|++|+.|....|.
T Consensus 3 ~~~~~~~Ci~C~~Cv~~CP~ 22 (80)
T TIGR03048 3 SVKIYDTCIGCTQCVRACPT 22 (80)
T ss_pred ceecCCcCcCcchHHHHCCc
Confidence 34556789999999988884
No 154
>PRK06991 ferredoxin; Provisional
Probab=37.20 E-value=13 Score=34.52 Aligned_cols=20 Identities=35% Similarity=0.876 Sum_probs=16.5
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.++...|++|+.|...+|.
T Consensus 80 ~~id~~~CigCg~Cv~aCP~ 99 (270)
T PRK06991 80 AVIDEQLCIGCTLCMQACPV 99 (270)
T ss_pred eEEccccCCCCcHHHHhCCH
Confidence 35678899999999988774
No 155
>CHL00065 psaC photosystem I subunit VII
Probab=34.77 E-value=17 Score=26.94 Aligned_cols=18 Identities=33% Similarity=0.848 Sum_probs=14.5
Q ss_pred ccccccccCCCCCccccc
Q 022195 144 VDENACIGCRECVHHASN 161 (301)
Q Consensus 144 vde~~CigC~~C~g~ap~ 161 (301)
++.+.|++|+.|....|.
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~ 23 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPT 23 (81)
T ss_pred CccccCCChhHHHHHCCc
Confidence 345689999999988884
No 156
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=34.32 E-value=26 Score=32.19 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=47.2
Q ss_pred cccccccccccCCCCCccccc-eeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeeccccEEEEEeCCCCCCC
Q 022195 141 ALFVDENACIGCRECVHHASN-TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKG 219 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~-tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG 219 (301)
.+.+ ...|.+|+.|...+|. .+.+.+ |...+.. . ..-.........||.+|+.........+++|.
T Consensus 164 ~I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~-~~C~~C~~Ci~~CP~~AI~i~~~~~~~if~vE-------- 230 (263)
T PRK00783 164 RIEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTD-L-LNCSLCKLCERACPGKAIRVSDDENKFIFTVE-------- 230 (263)
T ss_pred cccc-cccCCchHHHHHhCCccccEecC--CeEEEeC-h-hhCCCchHHHHhCCCCceEEEEcCCeEEEEec--------
Confidence 3444 6789999999988886 455544 3322221 1 11111223334467767765554442222211
Q ss_pred cEEecCCCCCCCcee-hhhHHHHHHHHHHhh
Q 022195 220 YGVFGGGWERPANVF-MAAKAFNKQLQQQAA 249 (301)
Q Consensus 220 ~~I~g~G~~~~~~vf-v~~~~~~~~~~~~~~ 249 (301)
.-|.=.|.+++ .+.+.++.++.+-..
T Consensus 231 ----s~G~l~p~~iv~~A~~~l~~k~~~~~~ 257 (263)
T PRK00783 231 ----SDGSLPVEEILLEALKILKRKADELIE 257 (263)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22333455666 344777777765443
No 157
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=34.18 E-value=10 Score=36.18 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCcccc-------------ceeeee-----CCcceEEEEEeeCCccccccccccCCCcceeeceeec
Q 022195 142 LFVDENACIGCRECVHHAS-------------NTFVMD-----EATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDRE 203 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap-------------~tf~~c-----~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~ 203 (301)
+.++.+.|++|+.|...+| ..|.+| .| ....-...||++++..+..+
T Consensus 157 V~ID~ekCiGCg~Cv~ACPygAi~~n~~~~~~eKC~~C~~Rie~G---------------~~PaCv~aCP~~A~~fGdld 221 (321)
T TIGR03478 157 VLVDQERCKGYRYCVEACPYKKVYFNPQSQKSEKCIGCYPRIEKG---------------IAPACVKQCPGRIRFVGYLD 221 (321)
T ss_pred EEECHHHCcchHHHHHhCCCCCcEecCCCCchhhCCCchhhhccC---------------CCCHHHhhcCcccEEEEeCC
Q ss_pred c
Q 022195 204 E 204 (301)
Q Consensus 204 e 204 (301)
+
T Consensus 222 d 222 (321)
T TIGR03478 222 D 222 (321)
T ss_pred C
No 158
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=32.98 E-value=49 Score=19.84 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhCC
Q 022195 63 GQEIKEAYRKLQKKYHP 79 (301)
Q Consensus 63 ~~eIk~ayr~l~~~~HP 79 (301)
.++.|.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999993
No 159
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=32.93 E-value=17 Score=34.86 Aligned_cols=20 Identities=30% Similarity=0.798 Sum_probs=16.0
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.++.+.|++|+.|...+|.
T Consensus 138 V~id~dkCigCg~Cv~aCP~ 157 (328)
T PRK10882 138 VHYDKDVCTGCRYCMVACPF 157 (328)
T ss_pred ccCCHHHcCcccHHHHhCCc
Confidence 45678899999999987663
No 160
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=32.89 E-value=15 Score=36.97 Aligned_cols=18 Identities=39% Similarity=0.997 Sum_probs=15.9
Q ss_pred cccccccccCCCCCcccc
Q 022195 143 FVDENACIGCRECVHHAS 160 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap 160 (301)
++.++.|+||+-|+..+|
T Consensus 46 vIsE~lCiGCGICvkkCP 63 (591)
T COG1245 46 VISEELCIGCGICVKKCP 63 (591)
T ss_pred eeEhhhhccchhhhccCC
Confidence 677899999999998877
No 161
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=32.72 E-value=17 Score=28.52 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=17.3
Q ss_pred CcccccccccccCCCCCcccc
Q 022195 140 EALFVDENACIGCRECVHHAS 160 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap 160 (301)
..+.++.+.|++|+.|...++
T Consensus 54 G~V~vd~e~CigCg~C~~~C~ 74 (95)
T PRK15449 54 GSVRFDYAGCLECGTCRILGL 74 (95)
T ss_pred CCEEEcCCCCCcchhhhhhcC
Confidence 457789999999999997653
No 162
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=31.34 E-value=10 Score=27.81 Aligned_cols=54 Identities=15% Similarity=0.388 Sum_probs=38.9
Q ss_pred cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig 198 (301)
|++.+-..|.--+.|+...|.+|..... --+.........++..+..||.+++.
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~rk----PWI~Pd~~~ve~i~~vi~sCPSGAl~ 70 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLGRK----PWIMPDAVDVEEIVKVIDTCPSGALK 70 (74)
T ss_pred EEEeccceeecccceecCCHhhcccCCC----CccCCCCCCHHHHHHHHHhCCchhhh
Confidence 6777778999999999999999876433 22223333556777889999986654
No 163
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=62 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=31.1
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ 84 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~ 84 (301)
-...-.||+|++..+.++|-+.|..|-....+.+.+.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 3345679999999999999999999998887777664
No 164
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=31.16 E-value=19 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.921 Sum_probs=16.7
Q ss_pred cccccccccccCCCCCcccc
Q 022195 141 ALFVDENACIGCRECVHHAS 160 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap 160 (301)
.+++|.++|+||+.|....+
T Consensus 3 ~~~~d~~~C~gC~~C~~aC~ 22 (161)
T TIGR02951 3 GFYVDQTRCSGCKTCQIACK 22 (161)
T ss_pred EEEEEcccCcCchHHHHHHH
Confidence 36789999999999986655
No 165
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=30.31 E-value=42 Score=30.93 Aligned_cols=19 Identities=26% Similarity=0.760 Sum_probs=15.9
Q ss_pred ccccccccCCCCCccccce
Q 022195 144 VDENACIGCRECVHHASNT 162 (301)
Q Consensus 144 vde~~CigC~~C~g~ap~t 162 (301)
++.+.|++|+.|...+|..
T Consensus 205 ~d~~~C~~C~~C~~~CP~~ 223 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEP 223 (271)
T ss_pred CCcccCcccCCcCCcCCCc
Confidence 6788999999999887753
No 166
>PLN00071 photosystem I subunit VII; Provisional
Probab=30.26 E-value=24 Score=25.95 Aligned_cols=19 Identities=32% Similarity=0.805 Sum_probs=15.3
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
+++.+.|++|+.|....|.
T Consensus 5 ~~~~~~C~~C~~C~~~CP~ 23 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPT 23 (81)
T ss_pred eEcCCcCcChhHHHHHCCc
Confidence 3455689999999988884
No 167
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=30.19 E-value=39 Score=24.49 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=16.6
Q ss_pred ccccccccccCCCCCccccce
Q 022195 142 LFVDENACIGCRECVHHASNT 162 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~t 162 (301)
+.++...|++|+.|....|..
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ 40 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEG 40 (78)
T ss_pred EEEcCCcCcChhHHHhhcCcc
Confidence 356778999999999877744
No 168
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=30.15 E-value=36 Score=28.82 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=13.8
Q ss_pred ccccccCCCCCccccce
Q 022195 146 ENACIGCRECVHHASNT 162 (301)
Q Consensus 146 e~~CigC~~C~g~ap~t 162 (301)
...|++|+.|...+|..
T Consensus 57 ~~~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 57 EERCIACKLCAAICPAD 73 (164)
T ss_pred CccCCcccChHHHcCcc
Confidence 34899999999888753
No 169
>PRK02651 photosystem I subunit VII; Provisional
Probab=29.89 E-value=31 Score=25.27 Aligned_cols=16 Identities=38% Similarity=0.995 Sum_probs=13.7
Q ss_pred ccccccCCCCCccccc
Q 022195 146 ENACIGCRECVHHASN 161 (301)
Q Consensus 146 e~~CigC~~C~g~ap~ 161 (301)
.+.|++|+.|....|.
T Consensus 8 ~~~Ci~C~~C~~~CP~ 23 (81)
T PRK02651 8 YDTCIGCTQCVRACPL 23 (81)
T ss_pred cccCCCcchHHHHCCc
Confidence 4689999999988884
No 170
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=29.86 E-value=40 Score=33.03 Aligned_cols=19 Identities=32% Similarity=0.901 Sum_probs=15.9
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
.++.+.|++|+.|...+|.
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~ 356 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACED 356 (420)
T ss_pred EECHHHCCCCCcccccCCC
Confidence 4567899999999988874
No 171
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=28.20 E-value=34 Score=31.34 Aligned_cols=18 Identities=22% Similarity=0.780 Sum_probs=14.9
Q ss_pred cccccccCCCCCccccce
Q 022195 145 DENACIGCRECVHHASNT 162 (301)
Q Consensus 145 de~~CigC~~C~g~ap~t 162 (301)
+.+.|++|+.|...+|..
T Consensus 199 ~~~~C~~C~~C~~vCP~~ 216 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEP 216 (255)
T ss_pred ccccCeEcCCccCcCCCC
Confidence 378999999999888753
No 172
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=27.78 E-value=33 Score=37.00 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=32.9
Q ss_pred ccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeeceeec
Q 022195 146 ENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDRE 203 (301)
Q Consensus 146 e~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~~~~ 203 (301)
...|+.||.|+..+|.---.....-. ..+.| ....+..+|+.|+++|.-...+.
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k~~~~--~~~~w--el~~v~TvCp~CsvGC~l~v~vk 256 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSSDFQY--TSNAW--ELKKIPATCPHCSDCCLIYYDVK 256 (819)
T ss_pred cccccccCcHHHhCCCCccccCcccc--ccCcc--ccccccCcCCCCccCCCeEEEcc
Confidence 45899999999988864333222110 01112 22356788999999997554443
No 173
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=27.74 E-value=52 Score=33.49 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=22.2
Q ss_pred cccccccccCCCCCcccccee--eeeCCcceEEEE
Q 022195 143 FVDENACIGCRECVHHASNTF--VMDEATGCARVK 175 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~tf--~~c~g~G~~~v~ 175 (301)
||+ +.|.||+.|...+|-.- .++.|.|..+.+
T Consensus 221 yVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAi 254 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAI 254 (622)
T ss_pred ccc-ccccccccccccCCcccCcccccccccceee
Confidence 667 89999999998877532 444566655444
No 174
>PRK13984 putative oxidoreductase; Provisional
Probab=27.55 E-value=25 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=16.4
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.+|.+.|++|+.|...+|.
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~ 59 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPT 59 (604)
T ss_pred cccChhhCcCccchhhhCCc
Confidence 34588899999999988874
No 175
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=27.24 E-value=1.1e+02 Score=28.83 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=32.7
Q ss_pred ccccccccccCCCCCccccc-----eeeeeCCcceE-EEEEeeCCcc---ccccccccCCCcceeeceeecc
Q 022195 142 LFVDENACIGCRECVHHASN-----TFVMDEATGCA-RVKVQYGDSD---QNIEVSVDSCPVNCIHWVDREE 204 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~-----tf~~c~g~G~~-~v~~q~g~~~---~~iq~aC~~Cpg~Cig~~~~~e 204 (301)
+.+|.++||.|+.|+..+.+ ...+- +.|.. .+....+... .......+.||++++..+...+
T Consensus 207 i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~-~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~ 277 (297)
T PTZ00305 207 TRVVLNRCIHCTRCVRFLNEHAQDFNLGMI-GRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADE 277 (297)
T ss_pred eeecCCcCcCccHHHHHHHHhhCCcEEEEe-ecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCccc
Confidence 44678899999999965443 12221 22322 2222222111 1112245889998876665544
No 176
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=26.81 E-value=93 Score=24.08 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=14.8
Q ss_pred ccccccccCCCCCccccce
Q 022195 144 VDENACIGCRECVHHASNT 162 (301)
Q Consensus 144 vde~~CigC~~C~g~ap~t 162 (301)
+....|++|+.|....|..
T Consensus 31 ~~~~~C~~C~~C~~~CP~~ 49 (101)
T TIGR00402 31 LFSAVCTRCGECASACENN 49 (101)
T ss_pred cCcCcCcChhHHHHHcCcc
Confidence 4456899999999877753
No 177
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=26.66 E-value=29 Score=31.29 Aligned_cols=22 Identities=27% Similarity=0.673 Sum_probs=17.6
Q ss_pred CcccccccccccCCCCCccccc
Q 022195 140 EALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~ 161 (301)
..+.++.++|++|+.|...++.
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~ 160 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDE 160 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHH
Confidence 3456788999999999987763
No 178
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=25.40 E-value=52 Score=26.11 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=13.4
Q ss_pred cccccCCCCCccccc
Q 022195 147 NACIGCRECVHHASN 161 (301)
Q Consensus 147 ~~CigC~~C~g~ap~ 161 (301)
..|++|+.|...+|.
T Consensus 43 ~~Ci~C~~C~~~CP~ 57 (122)
T TIGR01971 43 EKCIGCTLCAAVCPA 57 (122)
T ss_pred CcCcCcchhhhhcCH
Confidence 789999999998884
No 179
>COG2879 Uncharacterized small protein [Function unknown]
Probab=24.79 E-value=1e+02 Score=22.25 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCCCCCcchHHHHHHH
Q 022195 69 AYRKLQKKYHPDIAGQKGHEHTLLLN 94 (301)
Q Consensus 69 ayr~l~~~~HPD~~~~~~~~~f~~i~ 94 (301)
.|-.-+++.|||+.+-.-.+.|.+-.
T Consensus 27 nYVehmr~~hPd~p~mT~~EFfrec~ 52 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTYEEFFRECQ 52 (65)
T ss_pred HHHHHHHHhCcCCCcccHHHHHHHHH
Confidence 46667889999998765556665443
No 180
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=23.56 E-value=39 Score=28.81 Aligned_cols=21 Identities=33% Similarity=0.991 Sum_probs=17.2
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
-.+++.+.|++|+.|....|.
T Consensus 107 ~~~id~~~Ci~Cg~C~~aCp~ 127 (165)
T TIGR01944 107 VALIDEDNCIGCTKCIQACPV 127 (165)
T ss_pred eEEEECCcCCChhHHHHhCCc
Confidence 356788899999999987774
No 181
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=22.77 E-value=2.4e+02 Score=26.84 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=19.7
Q ss_pred ccccccccccCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCC
Q 022195 181 SDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG 226 (301)
Q Consensus 181 ~~~~iq~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G 226 (301)
-+..+..-|..|.+ +|.|.--+++++=++..|
T Consensus 72 ~I~rF~~kC~~C~~--------------~i~~kTDPkn~dY~~~~G 103 (324)
T PF04502_consen 72 PIYRFYIKCPRCSN--------------EIEFKTDPKNTDYVVESG 103 (324)
T ss_pred eEEEEEEEcCCCCC--------------EEeeecCCCCCCeeeecC
Confidence 34567788999998 445555555555544444
No 182
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=22.76 E-value=44 Score=34.52 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=3.0
Q ss_pred cccCCCc
Q 022195 188 SVDSCPV 194 (301)
Q Consensus 188 aC~~Cpg 194 (301)
.|+.|+|
T Consensus 70 ~c~~c~G 76 (715)
T COG1107 70 TCPECGG 76 (715)
T ss_pred ecccCCC
Confidence 3444444
No 183
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=22.53 E-value=77 Score=27.45 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=16.7
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.++...|++|+.|+..+|.
T Consensus 33 ~~~d~~~Ci~Cg~Cv~aCP~ 52 (181)
T PRK08222 33 PDLMPSQCIACGACTCACPA 52 (181)
T ss_pred eEeChhhCcchhHHHHhCCc
Confidence 45678899999999988775
No 184
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=21.80 E-value=46 Score=29.96 Aligned_cols=20 Identities=30% Similarity=0.825 Sum_probs=16.8
Q ss_pred ccccccccccCCCCCccccc
Q 022195 142 LFVDENACIGCRECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~ 161 (301)
+.++.+.|++|+.|...+|.
T Consensus 143 ~~id~~~C~~C~~C~~~CP~ 162 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPR 162 (234)
T ss_pred eEEChhHCcCcchHHHhCCc
Confidence 45778899999999988875
No 185
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=21.68 E-value=51 Score=34.08 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=28.4
Q ss_pred cccCCCCCcccc----ceeeeeCCcceEEEEEeeCCccccccc-cccCCCc
Q 022195 149 CIGCRECVHHAS----NTFVMDEATGCARVKVQYGDSDQNIEV-SVDSCPV 194 (301)
Q Consensus 149 CigC~~C~g~ap----~tf~~c~g~G~~~v~~q~g~~~~~iq~-aC~~Cpg 194 (301)
-+.|..|.+.+. .+|..|.|.|....-..-|.....-+. .|+.|..
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~ 103 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRR 103 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhh
Confidence 457888877654 478899998876655544543322222 3777754
No 186
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=21.31 E-value=45 Score=34.38 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCCCCccccc-----eeeeeCCcceEEEEEeeCC--ccccccccccCCCcceeece
Q 022195 137 PRPEALFVDENACIGCRECVHHASN-----TFVMDEATGCARVKVQYGD--SDQNIEVSVDSCPVNCIHWV 200 (301)
Q Consensus 137 ~r~~difvde~~CigC~~C~g~ap~-----tf~~c~g~G~~~v~~q~g~--~~~~iq~aC~~Cpg~Cig~~ 200 (301)
.....+..|.++||-|+.|+..+.+ ...+-+-....++....+. .....-...+.||++++-.+
T Consensus 132 ~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k 202 (603)
T TIGR01973 132 YLGPLIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSK 202 (603)
T ss_pred CCCCCeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccccccc
No 187
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.19 E-value=85 Score=25.56 Aligned_cols=40 Identities=15% Similarity=-0.013 Sum_probs=27.2
Q ss_pred cccccCCC--ccee----eceeeccccEEEEEeCCCCCCCcEEecC
Q 022195 186 EVSVDSCP--VNCI----HWVDREELPVLEFLIQPQPKKGYGVFGG 225 (301)
Q Consensus 186 q~aC~~Cp--g~Ci----g~~~~~e~k~LeV~Ip~G~~dG~~I~g~ 225 (301)
+.+|..|. +.|. ..........+++.-+.+.+.|+.|...
T Consensus 16 ~saC~~C~~~~~Cg~~~~~~~~~~~~~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 16 SSACGSCSASGGCGTGLLAKLFSGKPITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred CCcCcccCCCCCCCcchhhhhcCCCcEEEEecCCCCCCCCCEEEEE
Confidence 46788887 3576 2233334467778888999999998543
No 188
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.79 E-value=91 Score=33.45 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred ccccccccCCCcceeeceeeccccEEEE
Q 022195 183 QNIEVSVDSCPVNCIHWVDREELPVLEF 210 (301)
Q Consensus 183 ~~iq~aC~~Cpg~Cig~~~~~e~k~LeV 210 (301)
..+...|+.|+..|.-...+.+.+++.+
T Consensus 222 ~~~~SvC~~C~~GC~l~v~v~dg~ivrv 249 (797)
T PRK07860 222 VSTPSVCEHCASGCAQRTDHRRGKVLRR 249 (797)
T ss_pred eecceeCCCCCCCCCeEEEEcCCEEEEE
Confidence 3466789999998976666666555444
No 189
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=20.25 E-value=71 Score=28.09 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=19.7
Q ss_pred cccCCCCCcccc-----ceeeeeCCcceEEEEE
Q 022195 149 CIGCRECVHHAS-----NTFVMDEATGCARVKV 176 (301)
Q Consensus 149 CigC~~C~g~ap-----~tf~~c~g~G~~~v~~ 176 (301)
...|..|.|++. ..|..|.|.|....+.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~ 131 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV 131 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence 456777776643 4699999999876543
Done!