Query 022195
Match_columns 301
No_of_seqs 283 out of 2063
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 99.9 2.9E-26 1E-30 215.7 -3.1 195 43-254 22-236 (329)
2 1wjz_A 1700030A21RIK protein; 99.8 5.7E-21 1.9E-25 148.1 3.8 74 42-115 9-90 (94)
3 2dn9_A DNAJ homolog subfamily 99.8 1.2E-20 4.1E-25 141.7 5.4 71 45-115 3-75 (79)
4 2yua_A Williams-beuren syndrom 99.8 1.2E-20 4.2E-25 147.9 5.3 75 41-115 9-85 (99)
5 2ej7_A HCG3 gene; HCG3 protein 99.8 1.5E-20 5E-25 142.2 5.5 71 45-115 5-78 (82)
6 2ctp_A DNAJ homolog subfamily 99.8 1.2E-20 3.9E-25 141.5 4.3 72 45-116 3-75 (78)
7 2ctr_A DNAJ homolog subfamily 99.8 2E-20 6.7E-25 143.6 5.6 72 45-116 3-75 (88)
8 1hdj_A Human HSP40, HDJ-1; mol 99.8 2E-20 6.8E-25 139.9 5.4 69 48-116 2-71 (77)
9 2cug_A Mkiaa0962 protein; DNAJ 99.8 3.4E-20 1.2E-24 142.2 6.0 73 44-116 12-85 (88)
10 2dmx_A DNAJ homolog subfamily 99.8 3.8E-20 1.3E-24 143.0 5.2 72 45-116 5-79 (92)
11 2och_A Hypothetical protein DN 99.8 3.4E-20 1.2E-24 137.3 4.7 68 46-114 5-72 (73)
12 2o37_A Protein SIS1; HSP40, J- 99.8 4.8E-20 1.6E-24 142.6 4.3 70 46-116 5-74 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 7.5E-20 2.6E-24 143.5 4.1 68 49-116 2-72 (99)
14 2ctw_A DNAJ homolog subfamily 99.8 2.8E-19 9.6E-24 142.5 5.7 72 44-115 12-85 (109)
15 2ctq_A DNAJ homolog subfamily 99.8 2.5E-19 8.6E-24 143.5 5.3 71 45-115 16-88 (112)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.9E-19 6.6E-24 142.0 3.5 69 48-116 2-72 (103)
17 2ys8_A RAB-related GTP-binding 99.7 3.6E-18 1.2E-22 131.6 5.7 62 47-108 25-87 (90)
18 3bvo_A CO-chaperone protein HS 99.7 3.7E-18 1.3E-22 150.6 6.3 98 16-113 9-116 (207)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.5E-18 5.2E-23 138.1 3.5 72 45-116 11-88 (109)
20 2l6l_A DNAJ homolog subfamily 99.7 2.3E-18 8E-23 145.3 4.3 71 45-115 6-84 (155)
21 1gh6_A Large T antigen; tumor 99.7 2.1E-18 7.3E-23 138.5 1.6 65 48-114 7-73 (114)
22 1iur_A KIAA0730 protein; DNAJ 99.7 8.8E-18 3E-22 128.9 4.2 68 41-108 8-78 (88)
23 3apq_A DNAJ homolog subfamily 99.7 2E-17 7E-22 144.6 4.4 68 49-116 2-71 (210)
24 2pf4_E Small T antigen; PP2A, 99.7 7.5E-18 2.6E-22 144.4 1.2 66 47-114 9-76 (174)
25 1faf_A Large T antigen; J doma 99.7 3.2E-17 1.1E-21 123.3 3.2 61 47-109 9-71 (79)
26 3hho_A CO-chaperone protein HS 99.7 3E-17 1E-21 141.2 3.3 68 47-114 2-78 (174)
27 2guz_A Mitochondrial import in 99.6 1.1E-16 3.6E-21 118.0 4.2 62 44-107 9-71 (71)
28 1fpo_A HSC20, chaperone protei 99.6 5.3E-17 1.8E-21 139.3 2.8 66 49-114 1-75 (171)
29 1n4c_A Auxilin; four helix bun 99.6 1.6E-16 5.3E-21 137.1 4.1 61 49-109 117-182 (182)
30 3uo3_A J-type CO-chaperone JAC 99.6 1.8E-16 6.1E-21 137.1 3.9 67 46-113 8-81 (181)
31 2qwo_B Putative tyrosine-prote 99.6 2.3E-16 8E-21 121.7 3.0 54 49-102 33-91 (92)
32 3ag7_A Putative uncharacterize 99.6 2.8E-16 9.6E-21 124.5 2.4 61 44-105 36-105 (106)
33 3apo_A DNAJ homolog subfamily 99.5 4.5E-15 1.5E-19 153.1 0.4 73 44-116 16-90 (780)
34 1nlt_A Protein YDJ1, mitochond 99.3 4.9E-13 1.7E-17 121.0 0.5 107 148-254 37-166 (248)
35 2y4t_A DNAJ homolog subfamily 98.9 4.8E-10 1.6E-14 105.0 4.8 65 48-112 381-450 (450)
36 2guz_B Mitochondrial import in 98.9 1E-09 3.5E-14 79.0 3.5 52 49-102 4-58 (65)
37 3agx_A DNAJ homolog subfamily 97.9 5.4E-07 1.8E-11 77.5 -3.0 64 187-254 28-97 (181)
38 2q2g_A HSP40 protein, heat sho 97.0 4.4E-05 1.5E-09 65.3 -2.2 55 200-254 36-97 (180)
39 2ctt_A DNAJ homolog subfamily 97.0 0.00046 1.6E-08 53.5 3.7 61 148-212 27-103 (104)
40 1c3g_A Heat shock protein 40; 96.8 7.4E-05 2.5E-09 63.3 -3.0 51 204-254 34-91 (170)
41 1dax_A Ferredoxin I; electron 93.6 0.0097 3.3E-07 40.9 -0.6 60 141-200 3-62 (64)
42 1dwl_A Ferredoxin I; electron 93.0 0.086 2.9E-06 35.0 3.5 56 142-198 2-57 (59)
43 1iqz_A Ferredoxin; iron-sulfer 92.3 0.011 3.7E-07 42.9 -2.0 59 141-200 3-69 (81)
44 1exk_A DNAJ protein; extended 90.6 0.13 4.6E-06 37.1 2.5 31 160-194 28-58 (79)
45 1nlt_A Protein YDJ1, mitochond 90.5 0.33 1.1E-05 43.1 5.4 34 206-239 189-231 (248)
46 1sj1_A Ferredoxin; thermostabi 88.7 0.059 2E-06 36.7 -0.8 57 142-199 4-63 (66)
47 2pzi_A Probable serine/threoni 88.5 0.24 8.2E-06 49.8 3.3 48 46-99 626-675 (681)
48 1f2g_A Ferredoxin II; electron 87.5 0.11 3.8E-06 34.5 0.1 55 142-198 2-56 (58)
49 1rof_A Ferredoxin; electron tr 86.5 0.15 5.1E-06 33.9 0.3 26 142-167 3-28 (60)
50 3i38_A Putative chaperone DNAJ 83.0 1.1 3.6E-05 34.7 3.8 31 207-237 39-74 (109)
51 1xao_A YDJ1, mitochondrial pro 75.4 4.4 0.00015 31.6 5.2 32 206-237 34-74 (121)
52 1jb0_C Photosystem I iron-sulf 60.7 1.8 6.1E-05 30.3 0.0 26 142-167 3-29 (80)
53 1vda_A FMBP-1, fibroin-modulat 60.2 4 0.00014 22.7 1.4 10 264-273 1-10 (26)
54 1xer_A Ferredoxin; electron tr 57.5 2.3 7.8E-05 31.4 0.1 27 140-166 36-63 (103)
55 1c3g_A Heat shock protein 40; 48.5 16 0.00056 30.0 4.0 33 206-238 114-154 (170)
56 3i9v_3 NADH-quinone oxidoreduc 45.6 10 0.00035 38.9 2.8 30 183-212 250-279 (783)
57 2q2g_A HSP40 protein, heat sho 43.1 22 0.00074 29.5 4.0 32 207-238 121-160 (180)
58 1gte_A Dihydropyrimidine dehyd 42.5 3.9 0.00013 43.3 -1.0 58 141-202 945-1007(1025)
59 3agx_A DNAJ homolog subfamily 41.0 24 0.00084 29.2 4.0 32 207-238 121-160 (181)
60 3i9v_9 NADH-quinone oxidoreduc 39.0 10 0.00035 30.7 1.3 17 145-161 49-65 (182)
61 3lz8_A Putative chaperone DNAJ 36.8 26 0.00089 32.1 3.8 30 208-237 260-294 (329)
62 3gyx_B Adenylylsulfate reducta 35.7 7.2 0.00025 32.0 -0.2 20 142-161 2-26 (166)
63 2vpz_B NRFC protein; oxidoredu 33.6 11 0.00037 31.7 0.6 23 141-163 5-27 (195)
64 2d9d_A BAG family molecular ch 31.3 36 0.0012 24.9 2.9 27 263-289 56-83 (89)
65 3eun_A Ferredoxin; electron tr 31.2 16 0.00055 25.6 1.1 19 143-161 2-20 (82)
66 3j16_B RLI1P; ribosome recycli 30.6 8.7 0.0003 38.3 -0.6 21 140-160 46-66 (608)
67 2zvs_A Uncharacterized ferredo 30.5 18 0.00063 25.5 1.3 19 143-161 2-20 (85)
68 3tmm_A Transcription factor A, 30.3 14 0.00049 32.1 0.8 52 46-111 43-94 (238)
69 1rgv_A Ferredoxin; electron tr 29.0 23 0.0008 24.5 1.7 19 143-161 2-20 (80)
70 2fgo_A Ferredoxin; allochromat 28.2 22 0.00076 24.7 1.4 19 143-161 2-20 (82)
71 1ti6_B Pyrogallol hydroxytrans 28.2 37 0.0013 30.1 3.1 21 141-161 91-111 (274)
72 3i9v_3 NADH-quinone oxidoreduc 25.6 11 0.00037 38.7 -1.0 21 141-161 173-193 (783)
73 3lcz_A YCZA, inhibitor of trap 25.5 27 0.00092 23.2 1.3 9 162-170 25-33 (53)
74 1jnr_B Adenylylsulfate reducta 24.6 11 0.00038 30.3 -0.9 27 142-168 3-35 (150)
75 1owx_A Lupus LA protein, SS-B, 24.2 48 0.0016 25.8 2.8 22 51-72 20-42 (121)
76 3c8y_A Iron hydrogenase 1; dit 24.0 15 0.00052 36.2 -0.2 22 140-161 138-159 (574)
77 4euw_A Transcription factor SO 20.8 55 0.0019 24.5 2.5 55 43-111 28-82 (106)
78 1qqr_A Streptokinase domain B; 20.3 53 0.0018 26.2 2.2 33 50-82 33-65 (138)
79 7fd1_A FD1, protein (7-Fe ferr 20.1 35 0.0012 25.0 1.2 17 144-160 34-50 (106)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.90 E-value=2.9e-26 Score=215.68 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhcccccccccccccccc-ccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR-FHF 120 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~~-~~~ 120 (301)
++.+...|||+||||+++|+.+|||+|||+|+++||||+++++ +.++|++|++||++|+||.+|..||+++.... .++
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~ 101 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGF 101 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCc
Confidence 4456678999999999999999999999999999999998764 56799999999999999999999999853321 111
Q ss_pred cccCCC--CcccccCCCCCCCCcccccccccccCCC---CCccccc-----eeeeeC-CcceEEEEEeeCCccccccccc
Q 022195 121 GTNASA--GFSRSSWKGPPRPEALFVDENACIGCRE---CVHHASN-----TFVMDE-ATGCARVKVQYGDSDQNIEVSV 189 (301)
Q Consensus 121 ~~~~f~--g~g~~~~~gp~r~~difvde~~CigC~~---C~g~ap~-----tf~~c~-g~G~~~v~~q~g~~~~~iq~aC 189 (301)
+.. +. +.++. .....|+|-+.+--.+-+. ....+.. .+...+ -.|.... +....
T Consensus 102 ~~~-~~~~~~~f~----~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~k~----------i~i~~ 166 (329)
T 3lz8_A 102 GRQ-RQTHEQSYS----QQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRT----------ISYNL 166 (329)
T ss_dssp ----------------------------------------CCCCCCEEEEECCCTTGGGSCEEEE----------EEEEE
T ss_pred ccc-cccccCCcC----CCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccceE----------EEEEE
Confidence 110 00 00110 0011233322110000000 0000000 000000 0121111 11111
Q ss_pred cCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 190 DSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 190 ~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+.|.+ .+...+...+.|+|.||+|+++|++|+..| ++.+||+|+..+...+..++++.+||+-
T Consensus 167 ~v~~g--~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~ 236 (329)
T 3lz8_A 167 PVYNV--FGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEI 236 (329)
T ss_dssp EECCS--CC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEE
T ss_pred EeecC--CeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEE
Confidence 11211 233344445689999999999999997554 2457899999977666666677766654
No 2
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.81 E-value=5.7e-21 Score=148.09 Aligned_cols=74 Identities=28% Similarity=0.503 Sum_probs=66.0
Q ss_pred CCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHhhhhcccccccccccc
Q 022195 42 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 42 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
....+...|||+||||+++|+.+|||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+
T Consensus 9 ~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 9 ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp CCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred ccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999873 24569999999999999999999999986
Q ss_pred cc
Q 022195 114 GQ 115 (301)
Q Consensus 114 ~~ 115 (301)
..
T Consensus 89 ~~ 90 (94)
T 1wjz_A 89 SG 90 (94)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=141.74 Aligned_cols=71 Identities=44% Similarity=0.634 Sum_probs=64.5
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
.....|||+||||+++++.++||++||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence 4567899999999999999999999999999999999974 3567999999999999999999999998654
No 4
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=147.88 Aligned_cols=75 Identities=32% Similarity=0.498 Sum_probs=67.2
Q ss_pred CCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195 41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 41 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
...+.+...|||+||||+++|+.+|||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 34566778999999999999999999999999999999999964 3567999999999999999999999997643
No 5
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=142.23 Aligned_cols=71 Identities=37% Similarity=0.522 Sum_probs=64.1
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhcccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
.....|||+||||+++++.++||+|||+|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+..
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 34568999999999999999999999999999999999863 456899999999999999999999997643
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=141.55 Aligned_cols=72 Identities=36% Similarity=0.561 Sum_probs=65.1
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.....|||+||||+++++.++||++|++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 35578999999999999999999999999999999999764 4679999999999999999999999986543
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=143.59 Aligned_cols=72 Identities=33% Similarity=0.549 Sum_probs=65.2
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.....|||+||||+++++.+|||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 34568999999999999999999999999999999999864 4679999999999999999999999987544
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.80 E-value=2e-20 Score=139.92 Aligned_cols=69 Identities=35% Similarity=0.514 Sum_probs=63.2
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
..|||+||||+++++.++||+||++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 46899999999999999999999999999999999764 5679999999999999999999999986544
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.4e-20 Score=142.24 Aligned_cols=73 Identities=29% Similarity=0.499 Sum_probs=65.5
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
......|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 12 ~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 344578999999999999999999999999999999999864 5679999999999999999999999986543
No 10
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-20 Score=143.05 Aligned_cols=72 Identities=39% Similarity=0.594 Sum_probs=64.8
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.....|||+||||+++++.++||++||+|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+...
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 34567999999999999999999999999999999999763 4578999999999999999999999987544
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.79 E-value=3.4e-20 Score=137.30 Aligned_cols=68 Identities=37% Similarity=0.603 Sum_probs=61.9
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3467999999999999999999999999999999999754 6799999999999999999999999763
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.8e-20 Score=142.63 Aligned_cols=70 Identities=39% Similarity=0.525 Sum_probs=63.9
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
....|||+||||+++++.+|||++||+|++++|||+++.. .+.|++|++||++|+||.+|..||..+...
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 74 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLEA 74 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence 3568999999999999999999999999999999999754 579999999999999999999999987543
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.78 E-value=7.5e-20 Score=143.48 Aligned_cols=68 Identities=32% Similarity=0.486 Sum_probs=62.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccccccccccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.|||+||||+++|+.+|||+|||+|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5899999999999999999999999999999999864 4579999999999999999999999987544
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.8e-19 Score=142.55 Aligned_cols=72 Identities=29% Similarity=0.457 Sum_probs=65.0
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHhhhhcccccccccccccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
......|||+||||+++|+.+|||+|||+|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+..
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 345578999999999999999999999999999999999753 467999999999999999999999998743
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-19 Score=143.47 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhcccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
.....|||+||||+++|+.++||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 3456899999999999999999999999999999999974 3567999999999999999999999998754
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.76 E-value=1.9e-19 Score=141.99 Aligned_cols=69 Identities=39% Similarity=0.623 Sum_probs=63.4
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
..|||+||||+++++.++||+|||+|++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999999999974 35679999999999999999999999988654
No 17
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-18 Score=131.57 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=57.1
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-chHHHHHHHHHHhhhhccccccc
Q 022195 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKD 108 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~f~~i~~AY~vL~d~~~R~~ 108 (301)
...|||+||||+++|+.+|||+|||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 358999999999999999999999999999999999764 56799999999999999999875
No 18
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=150.65 Aligned_cols=98 Identities=26% Similarity=0.453 Sum_probs=79.3
Q ss_pred cCCCCCCCCCCCC-CccccceeccCCCCCCCCCccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------
Q 022195 16 VNPNKSSLRARWG-QRCSVIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK------- 85 (301)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~------- 85 (301)
..+.||++...|+ .....++|.....-.......|||+||||+++ ++..+||++||+|++++|||+++..
T Consensus 9 ~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~ 88 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDF 88 (207)
T ss_dssp --CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHH
T ss_pred CCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH
Confidence 4567777776653 33456888777666666667899999999987 7999999999999999999998753
Q ss_pred chHHHHHHHHHHhhhhcccccccccccc
Q 022195 86 GHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 86 ~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
+.+.|+.|++||++|+||.+|..||..+
T Consensus 89 a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 89 SEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 2357899999999999999999999754
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.72 E-value=1.5e-18 Score=138.13 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=64.4
Q ss_pred CCCccCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~-----~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.....|||+||||+++| +.+|||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 34478999999999999 99999999999999999999975 24569999999999999999999999987543
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=145.29 Aligned_cols=71 Identities=28% Similarity=0.523 Sum_probs=64.2
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHHhhhhcccccccccccccc
Q 022195 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG--------HEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (301)
Q Consensus 45 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~--------~~~f~~i~~AY~vL~d~~~R~~YD~~~~~ 115 (301)
.+...|||+||||+++++.++||+|||+|++++|||+++... .+.|+.|++||++|+||.+|..||..+..
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 456789999999999999999999999999999999997652 47899999999999999999999987753
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.70 E-value=2.1e-18 Score=138.46 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=60.4
Q ss_pred ccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195 48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
..+||+||||+++|+. ++||+|||+|++++|||+++. .+.|++|++||++|+||.+|..||.++.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999999 999999999999999999876 5799999999999999999999998653
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.69 E-value=8.8e-18 Score=128.88 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHhhhhccccccc
Q 022195 41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD 108 (301)
Q Consensus 41 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~f~~i~~AY~vL~d~~~R~~ 108 (301)
+........++|+||||+++|+.+|||+|||+|+++||||+++.. +.+.|++|++||++|+|...|..
T Consensus 8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 445566778999999999999999999999999999999999874 56799999999999999888744
No 23
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.67 E-value=2e-17 Score=144.60 Aligned_cols=68 Identities=44% Similarity=0.673 Sum_probs=62.3
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
.|||+||||+++|+.+|||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 589999999999999999999999999999999964 35679999999999999999999999987543
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.67 E-value=7.5e-18 Score=144.40 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=58.4
Q ss_pred CccCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhccccccccccccc
Q 022195 47 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
...|||+||||+++|+ .+|||+|||+|++++|||++++ .+.|++|++||++|+||.+|..||.++.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3478999999999998 6999999999999999999876 4799999999999999999999999874
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.65 E-value=3.2e-17 Score=123.28 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=55.7
Q ss_pred CccCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccc
Q 022195 47 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~Y 109 (301)
...++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+|+.+|..+
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34679999999999 999999999999999999999864 57999999999999999988873
No 26
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.65 E-value=3e-17 Score=141.18 Aligned_cols=68 Identities=29% Similarity=0.555 Sum_probs=60.6
Q ss_pred CccCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc-------chHHHHHHHHHHhhhhccccccccccccc
Q 022195 47 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 47 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~-------~~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
...|||+||||+++++ ..+||++||+|++++|||+++.. +.+.|..|++||++|+||.+|..||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 3579999999999998 99999999999999999998764 23689999999999999999999998754
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.1e-16 Score=118.00 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCCCccCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccc
Q 022195 44 RASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~ 107 (301)
..+...++|+||||++ +++.+|||++||+|++++|||++++ .+.|++|++||++|+|+..|+
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--HHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHhhhhhcC
Confidence 3455678999999999 7999999999999999999999754 579999999999999987764
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.63 E-value=5.3e-17 Score=139.27 Aligned_cols=66 Identities=24% Similarity=0.502 Sum_probs=60.0
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHhhhhccccccccccccc
Q 022195 49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (301)
Q Consensus 49 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~f~~i~~AY~vL~d~~~R~~YD~~~~ 114 (301)
+|||+||||++++ +..+||++||+|++++|||+++... .+.|..|++||++|+||.+|..||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4799999999999 9999999999999999999987642 3589999999999999999999999753
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=1.6e-16 Score=137.08 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhcccccccc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY 109 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~Y 109 (301)
.|+|+||||+++|+.++||+|||+|++++|||+++.. +.+.|+.|++||++|+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6899999999999999999999999999999998754 456999999999999999999987
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.61 E-value=1.8e-16 Score=137.11 Aligned_cols=67 Identities=31% Similarity=0.559 Sum_probs=61.1
Q ss_pred CCccCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccccc
Q 022195 46 SKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (301)
Q Consensus 46 ~~~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~~~ 113 (301)
....|||+|| |+++ +++..+||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 4567999999 4665 8999999999999999999999987 6789999999999999999999999975
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=2.3e-16 Score=121.68 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=49.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhc
Q 022195 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 49 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d 102 (301)
.++|++|||+++||.+|||+|||++++++|||++++. +.+.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999753 45689999999999986
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.58 E-value=2.8e-16 Score=124.54 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---------chHHHHHHHHHHhhhhcccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVLMRGDL 105 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~f~~i~~AY~vL~d~~~ 105 (301)
......|||+|||++. ||.++||+|||+|++++|||+++.. +.+.|+.|++||++|+|+..
T Consensus 36 ~l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 36 ILWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TSCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HhcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 3344589999999996 9999999999999999999998631 35699999999999999863
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.47 E-value=4.5e-15 Score=153.06 Aligned_cols=73 Identities=41% Similarity=0.635 Sum_probs=40.8
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHhhhhccccccccccccccc
Q 022195 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (301)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~f~~i~~AY~vL~d~~~R~~YD~~~~~~ 116 (301)
......|||+||||+++|+.+|||+|||+|++++|||+++. .+.+.|++|++||++|+||.+|..||.++...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 34456899999999999999999999999999999999864 35679999999999999999999999988543
No 34
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.27 E-value=4.9e-13 Score=120.97 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=87.6
Q ss_pred ccccCCCCCccc-----cceeeeeCCcceEEEEEeeCCccccccccccCCCc------------ceeeceeeccccEEEE
Q 022195 148 ACIGCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEF 210 (301)
Q Consensus 148 ~CigC~~C~g~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg------------~Cig~~~~~e~k~LeV 210 (301)
.-..|..|.+++ +.+|..|.|.|.....++.+++.++++.+|+.|.| .|.+.+.+.+.+.|+|
T Consensus 37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V 116 (248)
T 1nlt_A 37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEV 116 (248)
T ss_dssp EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEE
T ss_pred EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEE
Confidence 334566666553 47899999999999889999877888999999987 5888899999999999
Q ss_pred EeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 211 LIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 211 ~Ip~G~~dG~~I~g~G------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
.||+|+++|++|...| ++.|+|||+..+...+.+++|+.+||+-
T Consensus 117 ~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 117 HVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp EECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred EECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 9999999999997555 2467999999977666677777777765
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.93 E-value=4.8e-10 Score=104.97 Aligned_cols=65 Identities=37% Similarity=0.631 Sum_probs=54.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chHHHHHHHHHHhhhhccccccccccc
Q 022195 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (301)
Q Consensus 48 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~f~~i~~AY~vL~d~~~R~~YD~~ 112 (301)
..++|++||+..+++.++|+++|+++++++|||+.+.+ +.+.|+.|++||++|+||++|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 35899999999999999999999999999999998764 456999999999999999999999973
No 36
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1e-09 Score=79.01 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=45.7
Q ss_pred cCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhc
Q 022195 49 KNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (301)
Q Consensus 49 ~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d 102 (301)
...|.||||+++ ++.++|+++||+|....|||++++. .....|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~--yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF--YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHH
Confidence 456899999999 9999999999999999999998653 456779999999964
No 37
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.89 E-value=5.4e-07 Score=77.47 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=48.5
Q ss_pred ccccCCCcceeeceeeccccEEEEEeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 187 VSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 187 ~aC~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~dG~~I~g~G------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
..|..|.| .+.+.+.+.|+|.||+|+++|++|...| ++.+||+|+..+...+..++++.+|++-
T Consensus 28 ~~c~~c~G----~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~ 97 (181)
T 3agx_A 28 HKRLNPDG----KSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY 97 (181)
T ss_dssp EEEECTTS----SCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred cccCCCCC----ceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEE
Confidence 34666655 5567777899999999999999997554 3567899999977666666777766664
No 38
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=97.03 E-value=4.4e-05 Score=65.35 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=42.7
Q ss_pred eeeccccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 200 VDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 200 ~~~~e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+.+.+.+.|+|.||+|+++|++|...| ++.+||+|+..+...+..++|+.+|++-
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~ 97 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIM 97 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEE
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEE
Confidence 456677899999999999999997554 2456899999977666667777766664
No 39
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00046 Score=53.55 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=43.7
Q ss_pred ccccCCCCCcc------ccceeeeeCCcceEEEEEeeCCccccccccccCCCc----------ceeeceeeccccEEEEE
Q 022195 148 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFL 211 (301)
Q Consensus 148 ~CigC~~C~g~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg----------~Cig~~~~~e~k~LeV~ 211 (301)
.-..|..|.+. .+.+|..|.|.|...+.+ |++ +++.+|+.|.| .|.+.+.+.+.+.|+|+
T Consensus 27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~--~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 102 (104)
T 2ctt_A 27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPF--VMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102 (104)
T ss_dssp CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTE--EEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCS
T ss_pred eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCE--EEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEE
Confidence 34455555544 357899999999765443 553 46788999877 58888889988888886
Q ss_pred e
Q 022195 212 I 212 (301)
Q Consensus 212 I 212 (301)
+
T Consensus 103 ~ 103 (104)
T 2ctt_A 103 S 103 (104)
T ss_dssp C
T ss_pred c
Confidence 5
No 40
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=96.76 E-value=7.4e-05 Score=63.34 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=40.2
Q ss_pred cccEEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022195 204 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 254 (301)
Q Consensus 204 e~k~LeV~Ip~G~~dG~~I~g~G-------~~~~~~vfv~~~~~~~~~~~~~~~~~~~ 254 (301)
+.+.|+|.||+|+++|++|...| ++.+||+|+..+...+..++++.+|++-
T Consensus 34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~ 91 (170)
T 1c3g_A 34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIY 91 (170)
T ss_dssp EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEE
T ss_pred EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeE
Confidence 66799999999999999997554 2457899999977666666777766664
No 41
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=93.62 E-value=0.0097 Score=40.92 Aligned_cols=60 Identities=42% Similarity=0.877 Sum_probs=36.9
Q ss_pred cccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceeece
Q 022195 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 200 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig~~ 200 (301)
.+.++.+.|++|+.|....|..+.+.+..|...+.......-.........||.++|...
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred EEEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence 356788899999999999997777765435444322001111122344567888887543
No 42
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=92.98 E-value=0.086 Score=34.99 Aligned_cols=56 Identities=29% Similarity=0.636 Sum_probs=33.1
Q ss_pred ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig 198 (301)
+.++.+.|++|+.|....|..+.+.+..|...+. .....-.........||.+++.
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~ 57 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAIS 57 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEE
T ss_pred eEEChhhCcChhHHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEE
Confidence 4567889999999999999767662233443331 0111111233344667877764
No 43
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=92.30 E-value=0.011 Score=42.94 Aligned_cols=59 Identities=25% Similarity=0.496 Sum_probs=37.9
Q ss_pred cccccccccccCCCCCccccceeeeeCCcceEEEEEeeC------C--ccccccccccCCCcceeece
Q 022195 141 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG------D--SDQNIEVSVDSCPVNCIHWV 200 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g------~--~~~~iq~aC~~Cpg~Cig~~ 200 (301)
.++++.++|++|+.|...+|..|.+.+. |...+..+.. + .-.........||.++|...
T Consensus 3 ~v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~ 69 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVA 69 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEe
Confidence 3567889999999999999988877643 5544321100 0 01123345677899888654
No 44
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=90.63 E-value=0.13 Score=37.11 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.5
Q ss_pred cceeeeeCCcceEEEEEeeCCccccccccccCCCc
Q 022195 160 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 194 (301)
Q Consensus 160 p~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg 194 (301)
+.+|..|.|.|..... + +++ +++..|+.|.|
T Consensus 28 ~~~C~~C~G~G~~~~~-~-g~~--~~~~~C~~C~G 58 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMR-Q-GFF--AVQQTCPHCQG 58 (79)
T ss_dssp CEECTTTTTSSEEEEE-E-TTE--EEEEECTTTTT
T ss_pred CCCCCCCcCeEEEEEE-c-CCC--EEeeECcCCCC
Confidence 4689999999976553 3 433 46778999988
No 45
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=90.47 E-value=0.33 Score=43.07 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=25.5
Q ss_pred cEEEEEeCCC--CCCCcEEecCCCC-------CCCceehhhHH
Q 022195 206 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAAKA 239 (301)
Q Consensus 206 k~LeV~Ip~G--~~dG~~I~g~G~~-------~~~~vfv~~~~ 239 (301)
..++|.||+| +..|+.+.+.|.+ ..||+||..++
T Consensus 189 ~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V 231 (248)
T 1nlt_A 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTI 231 (248)
T ss_dssp CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEE
T ss_pred CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEE
Confidence 3689999999 9999998766532 23788887643
No 46
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=88.69 E-value=0.059 Score=36.70 Aligned_cols=57 Identities=28% Similarity=0.575 Sum_probs=34.3
Q ss_pred ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCc-c--ccccccccCCCcceeec
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS-D--QNIEVSVDSCPVNCIHW 199 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~-~--~~iq~aC~~Cpg~Cig~ 199 (301)
+.++.+.|++|+.|....|..+.+.. .|...++.+..+. . .........||.++|..
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~~~~~~~-~~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~ 63 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPDVFEMND-EGKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTTTEEECT-TSCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred EEECcccCcCchHHHHhCCceEEECC-CCceeecccCCCcHHHHHHHHHHHhhCCHhhEEE
Confidence 56788899999999999998776653 2443332211111 1 11223346788888754
No 47
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.49 E-value=0.24 Score=49.76 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCccCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhh
Q 022195 46 SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV 99 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~v 99 (301)
....|||.+||++.+... .+|+++||+|++..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence 334559999999777655 77999999999977655 3678888888775
No 48
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=87.49 E-value=0.11 Score=34.53 Aligned_cols=55 Identities=29% Similarity=0.629 Sum_probs=31.9
Q ss_pred ccccccccccCCCCCccccceeeeeCCcceEEEEEeeCCccccccccccCCCcceee
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 198 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg~Cig 198 (301)
+.++ +.|++|+.|....|..+.+.+. |...++.+....-.........||.++|.
T Consensus 2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEE
Confidence 4577 8999999999999987666443 43333221011111123344567877764
No 49
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=86.54 E-value=0.15 Score=33.85 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=20.7
Q ss_pred ccccccccccCCCCCccccceeeeeC
Q 022195 142 LFVDENACIGCRECVHHASNTFVMDE 167 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~tf~~c~ 167 (301)
+.++.+.|++|+.|....|..+.+.+
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~ 28 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPDVFQLGD 28 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTTTBCCCS
T ss_pred EEEchhhCCCChHHHHhCcHHHeECC
Confidence 46778899999999999997665543
No 50
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=83.05 E-value=1.1 Score=34.72 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCCCcEEecCCCC-----CCCceehhh
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE-----RPANVFMAA 237 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~-----~~~~vfv~~ 237 (301)
.++|.||+|+..|+++...|.| ..||+||..
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~~~GDL~v~~ 74 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVI 74 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEE
T ss_pred CEEEeeCCCcCcCeEEEECCccCCCCCCCcCEEEEE
Confidence 5799999999999999766643 346877765
No 51
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=75.37 E-value=4.4 Score=31.64 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=24.3
Q ss_pred cEEEEEeCCC--CCCCcEEecCCCC-------CCCceehhh
Q 022195 206 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAA 237 (301)
Q Consensus 206 k~LeV~Ip~G--~~dG~~I~g~G~~-------~~~~vfv~~ 237 (301)
..++|.||+| ++.|+.+...|.| ..||+||..
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~ 74 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKF 74 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEE
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEE
Confidence 4689999999 9999998766533 347888765
No 52
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=60.70 E-value=1.8 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=19.0
Q ss_pred ccccccccccCCCCCccccc-eeeeeC
Q 022195 142 LFVDENACIGCRECVHHASN-TFVMDE 167 (301)
Q Consensus 142 ifvde~~CigC~~C~g~ap~-tf~~c~ 167 (301)
++++.+.|++|+.|....|. .+.+.+
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred CcccCCcCcChhHHHHHCCcccccccc
Confidence 45667889999999988884 444443
No 53
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=60.24 E-value=4 Score=22.74 Aligned_cols=10 Identities=70% Similarity=0.860 Sum_probs=8.4
Q ss_pred CChHHHHHHH
Q 022195 264 ETPAQAEARA 273 (301)
Q Consensus 264 ~~~~~~~~~~ 273 (301)
|||+|+++|-
T Consensus 1 esp~qr~~rl 10 (26)
T 1vda_A 1 ETPAQRQARL 10 (26)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7999998874
No 54
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=57.47 E-value=2.3 Score=31.45 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred CcccccccccccCCCCCccccc-eeeee
Q 022195 140 EALFVDENACIGCRECVHHASN-TFVMD 166 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~-tf~~c 166 (301)
..+.++.+.|++|+.|...+|. .+.+.
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~ 63 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWY 63 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEE
T ss_pred ceEEEehhhCCChhhHHHHcCccCeecc
Confidence 3567888999999999988884 34443
No 55
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=48.53 E-value=16 Score=29.97 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=24.8
Q ss_pred cEEEEEeCCCCCCCcEEecCCCC--------CCCceehhhH
Q 022195 206 PVLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAK 238 (301)
Q Consensus 206 k~LeV~Ip~G~~dG~~I~g~G~~--------~~~~vfv~~~ 238 (301)
..++|.+|+|+..|+.+..+|.| ..||+||..+
T Consensus 114 ~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~ 154 (170)
T 1c3g_A 114 RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYK 154 (170)
T ss_dssp CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEEC
T ss_pred CEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEE
Confidence 36789999999999999766532 2378887663
No 56
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=45.63 E-value=10 Score=38.86 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=20.8
Q ss_pred ccccccccCCCcceeeceeeccccEEEEEe
Q 022195 183 QNIEVSVDSCPVNCIHWVDREELPVLEFLI 212 (301)
Q Consensus 183 ~~iq~aC~~Cpg~Cig~~~~~e~k~LeV~I 212 (301)
..+..+|+.|+..|.-...+.+-+++.|.-
T Consensus 250 ~~~~s~C~~C~~gC~i~v~v~~g~v~rv~~ 279 (783)
T 3i9v_3 250 EETPTTCALCPVGCGITADTRSGELLRIRA 279 (783)
T ss_dssp EEEEEECCSSSSCCEEEEEEETBEEEEEEE
T ss_pred eEEEEeCCCCCCcccceeeeECCEEEeccC
Confidence 345678999998897666666666655553
No 57
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=43.10 E-value=22 Score=29.51 Aligned_cols=32 Identities=6% Similarity=-0.031 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCCCcEEecCCCC--------CCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~--------~~~~vfv~~~ 238 (301)
.++|.+|+|+..|+.+..+|.| ..||+||..+
T Consensus 121 ~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~ 160 (180)
T 2q2g_A 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFD 160 (180)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEE
T ss_pred EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence 6889999999999998766532 2378887663
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=42.53 E-value=3.9 Score=43.29 Aligned_cols=58 Identities=28% Similarity=0.642 Sum_probs=32.6
Q ss_pred cccccccccccCCCCCcccc----ceeeeeCCcceEEEEEeeCCccccccccccCCCc-ceeeceee
Q 022195 141 ALFVDENACIGCRECVHHAS----NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV-NCIHWVDR 202 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap----~tf~~c~g~G~~~v~~q~g~~~~~iq~aC~~Cpg-~Cig~~~~ 202 (301)
.+.++.+.|++|+.|...+| ..+.+.+..+...+ . ..-..+......||. +||.....
T Consensus 945 ~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~-~---~~C~~Cg~C~~~CP~~~Ai~~~~~ 1007 (1025)
T 1gte_A 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-T---DTCTGCTLCLSVCPIIDCIRMVSR 1007 (1025)
T ss_dssp EEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEE-C---TTCCCCCHHHHHCSSTTTEEEEEC
T ss_pred eEEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEe-C---ccCCChhHHHhhCCCCCCEEEecC
Confidence 34577889999999999888 34455444332221 1 111112233345777 78765543
No 59
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=41.01 E-value=24 Score=29.24 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCCCcEEecCCCC--------CCCceehhhH
Q 022195 207 VLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAK 238 (301)
Q Consensus 207 ~LeV~Ip~G~~dG~~I~g~G~~--------~~~~vfv~~~ 238 (301)
.++|.||+|+..|+.+...|.| ..||+||..+
T Consensus 121 ~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~ 160 (181)
T 3agx_A 121 TIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFE 160 (181)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEE
T ss_pred EEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence 6889999999999998755522 2378887663
No 60
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=38.97 E-value=10 Score=30.73 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.3
Q ss_pred cccccccCCCCCccccc
Q 022195 145 DENACIGCRECVHHASN 161 (301)
Q Consensus 145 de~~CigC~~C~g~ap~ 161 (301)
+.+.|++|+.|...+|.
T Consensus 49 d~~~Ci~C~~C~~~CP~ 65 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPA 65 (182)
T ss_dssp SCBSCCCCCHHHHHCTT
T ss_pred CCccCcccccchhhCCc
Confidence 46799999999988875
No 61
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=36.77 E-value=26 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=23.6
Q ss_pred EEEEeCCCCCCCcEEecCCCCCC-----Cceehhh
Q 022195 208 LEFLIQPQPKKGYGVFGGGWERP-----ANVFMAA 237 (301)
Q Consensus 208 LeV~Ip~G~~dG~~I~g~G~~~~-----~~vfv~~ 237 (301)
++|.||+|...|+.++++|.|-| ||+||..
T Consensus 260 v~l~ip~gt~~g~~~rl~G~GmP~~~~rGDL~v~~ 294 (329)
T 3lz8_A 260 ILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVI 294 (329)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEE
T ss_pred EEEEECCCCCCCCEEEEcCCCCCCCCCCCCEEEEE
Confidence 68999999999999987775443 6777655
No 62
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=35.67 E-value=7.2 Score=32.04 Aligned_cols=20 Identities=35% Similarity=0.896 Sum_probs=15.7
Q ss_pred ccccccccccCC-----CCCccccc
Q 022195 142 LFVDENACIGCR-----ECVHHASN 161 (301)
Q Consensus 142 ifvde~~CigC~-----~C~g~ap~ 161 (301)
++++.+.|++|+ .|...+|.
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~ 26 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPN 26 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTT
T ss_pred CEEcchhcCCCCCCCcchhHHhCCc
Confidence 467888999999 77776775
No 63
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=33.62 E-value=11 Score=31.73 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=18.3
Q ss_pred cccccccccccCCCCCcccccee
Q 022195 141 ALFVDENACIGCRECVHHASNTF 163 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~tf 163 (301)
.+++|.++|+||+.|....+...
T Consensus 5 ~~~iD~~~CigC~~C~~aC~~~~ 27 (195)
T 2vpz_B 5 AMAIDLSLCVGCAACAVACKMEN 27 (195)
T ss_dssp EEEEETTTCCCCCHHHHHHHHHT
T ss_pred eEEeeHHHCcChhHHHHHhhHhh
Confidence 36789999999999997766543
No 64
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.30 E-value=36 Score=24.93 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHHHHHHh-hhhhHHHH
Q 022195 263 KETPAQAEARASASMKIKM-ERFSIIWN 289 (301)
Q Consensus 263 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~ 289 (301)
..-|-=++||++|+.++.. +++.+||.
T Consensus 56 ~~NpcIReaRRrAV~EvQ~lit~lDlke 83 (89)
T 2d9d_A 56 EKNPCIREARRRAVIEVQTLITYIDLKE 83 (89)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999874 67777764
No 65
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=31.18 E-value=16 Score=25.60 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=16.0
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (82)
T 3eun_A 2 LMITDECINCDVCEPECPN 20 (82)
T ss_dssp EEECTTCCCCCTTGGGCTT
T ss_pred eEeCCCCcCccchHHHCCh
Confidence 4567899999999988885
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=30.56 E-value=8.7 Score=38.30 Aligned_cols=21 Identities=38% Similarity=0.893 Sum_probs=17.4
Q ss_pred CcccccccccccCCCCCcccc
Q 022195 140 EALFVDENACIGCRECVHHAS 160 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap 160 (301)
...++.++.|+||+-|+..+|
T Consensus 46 ~~~~i~~~~c~~~~~~~~~cp 66 (608)
T 3j16_B 46 KIAFISEILCIGCGICVKKCP 66 (608)
T ss_dssp TEEEECTTTCCCCCHHHHHCS
T ss_pred CceEEehhhccccccccccCC
Confidence 346788999999999997766
No 67
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=30.48 E-value=18 Score=25.48 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=15.8
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
+++...|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPN 20 (85)
T ss_dssp EEECTTCCCCCTTTTTCTT
T ss_pred EEeCCcCcChhHHHHHCch
Confidence 4566889999999988885
No 68
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=30.31 E-value=14 Score=32.13 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccc
Q 022195 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (301)
Q Consensus 46 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (301)
-...+.|-++ -+.+|...+.-||+.. ..+..+.|.+.|..|++.++...+|.
T Consensus 43 KrP~say~lF-----------~~e~r~~~k~~~P~~~---~~eisk~lge~Wk~Ls~~EK~~y~~~ 94 (238)
T 3tmm_A 43 KKPVSSYLRF-----------SKEQLPIFKAQNPDAK---TTELIRRIAQRWRELPDSKKKIYQDA 94 (238)
T ss_dssp CCCCCHHHHH-----------HHHHHHHHHHHSTTSC---HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCCCHHHHH-----------HHHHHHHHHHhCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445566655 5666777788899875 45678889999999998766655544
No 69
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=29.04 E-value=23 Score=24.48 Aligned_cols=19 Identities=26% Similarity=0.753 Sum_probs=15.8
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPN 20 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTT
T ss_pred eEeCCCCcChhhHHHHcCh
Confidence 3566789999999998885
No 70
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=28.25 E-value=22 Score=24.73 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.8
Q ss_pred cccccccccCCCCCccccc
Q 022195 143 FVDENACIGCRECVHHASN 161 (301)
Q Consensus 143 fvde~~CigC~~C~g~ap~ 161 (301)
+++...|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPN 20 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTT
T ss_pred ceeCCCCCChhhHHHHCCh
Confidence 4566789999999988884
No 71
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=28.16 E-value=37 Score=30.15 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.3
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
.+.++.+.|++|+.|...+|.
T Consensus 91 ~v~id~~~CigC~~C~~~CP~ 111 (274)
T 1ti6_B 91 IVLIDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp CEEECTTTTTTCGGGGGGCSS
T ss_pred cEEechhhccchHHHHhhCcc
Confidence 356788899999999988774
No 72
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=25.64 E-value=11 Score=38.66 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=16.8
Q ss_pred cccccccccccCCCCCccccc
Q 022195 141 ALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 141 difvde~~CigC~~C~g~ap~ 161 (301)
.+.++.++|++|+.|+..++.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHH
T ss_pred cEEEchhhCCCccHHHHHhhh
Confidence 456688999999999977643
No 73
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=25.53 E-value=27 Score=23.20 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=3.9
Q ss_pred eeeeeCCcc
Q 022195 162 TFVMDEATG 170 (301)
Q Consensus 162 tf~~c~g~G 170 (301)
.|..|.|.|
T Consensus 25 ~C~~C~G~G 33 (53)
T 3lcz_A 25 PCPKCLGKG 33 (53)
T ss_dssp ECTTTTTSS
T ss_pred cCCCCCCcE
Confidence 344444444
No 74
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=24.62 E-value=11 Score=30.32 Aligned_cols=27 Identities=30% Similarity=0.731 Sum_probs=19.4
Q ss_pred ccccccccccCC-----CCCccccce-eeeeCC
Q 022195 142 LFVDENACIGCR-----ECVHHASNT-FVMDEA 168 (301)
Q Consensus 142 ifvde~~CigC~-----~C~g~ap~t-f~~c~g 168 (301)
++++.+.|++|+ .|...+|.. ..+.++
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~ 35 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKE 35 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecC
Confidence 457888999999 898887753 344443
No 75
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.23 E-value=48 Score=25.78 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=16.8
Q ss_pred cccccCCCCC-CCHHHHHHHHHH
Q 022195 51 YYELLGVSVE-ANGQEIKEAYRK 72 (301)
Q Consensus 51 ~Y~iLgv~~~-as~~eIk~ayr~ 72 (301)
...|-|++.+ ++.++||.+|.+
T Consensus 20 il~v~~l~~~~~sredLke~F~~ 42 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSN 42 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCS
T ss_pred EEEEecCCCCcCCHHHHHHHHHh
Confidence 3456678888 888889988875
No 76
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=24.05 E-value=15 Score=36.16 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=18.8
Q ss_pred CcccccccccccCCCCCccccc
Q 022195 140 EALFVDENACIGCRECVHHASN 161 (301)
Q Consensus 140 ~difvde~~CigC~~C~g~ap~ 161 (301)
..++++.+.|++|+.|+..+|.
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~ 159 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGK 159 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHH
T ss_pred CcceeCcccCcCCCCccchhCc
Confidence 3577889999999999988885
No 77
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=20.76 E-value=55 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=38.2
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHhhhhcccccccccc
Q 022195 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (301)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~f~~i~~AY~vL~d~~~R~~YD~ 111 (301)
...-...+.|-++ ...+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 28 ~~pKRP~naf~lF-----------~~~~r~~~k~~~P~~~---~~eisk~lg~~Wk~ls~eeK~~Y~~~ 82 (106)
T 4euw_A 28 PHVKRPMNAFMVW-----------AQAARRKLADQYPHLH---NAELSKTLGKLWRLLNESEKRPFVEE 82 (106)
T ss_dssp CCCCCCCCHHHHH-----------HHHHHHHHHHHCTTSC---HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCCCCCCHHHHH-----------HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344455666665 6778888888899864 34677889999999987665554443
No 78
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=20.27 E-value=53 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 022195 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA 82 (301)
Q Consensus 50 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~ 82 (301)
-++..|.|....+.+|++++=..+..++|||-.
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y~ 65 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGYT 65 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTEE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCcE
Confidence 457888999999999999999999999999953
No 79
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=20.15 E-value=35 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=8.5
Q ss_pred ccccccccCCCCCcccc
Q 022195 144 VDENACIGCRECVHHAS 160 (301)
Q Consensus 144 vde~~CigC~~C~g~ap 160 (301)
++...|++|+.|....|
T Consensus 34 i~~~~C~~Cg~C~~~CP 50 (106)
T 7fd1_A 34 IHPDECIDCALCEPECP 50 (106)
T ss_dssp ECTTTCCCCCTTGGGCT
T ss_pred ECcccCCChhhhHHhCC
Confidence 34445555555554443
Done!