Query 022196
Match_columns 301
No_of_seqs 180 out of 314
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 5.5E-34 1.2E-38 252.3 20.7 192 71-283 2-198 (198)
2 PF14869 DUF4488: Domain of un 52.6 79 0.0017 27.2 7.4 74 123-211 2-76 (133)
3 PF08212 Lipocalin_2: Lipocali 48.7 1.5E+02 0.0032 24.8 8.6 34 255-288 80-116 (143)
4 COG3040 Blc Bacterial lipocali 47.3 63 0.0014 29.0 6.2 42 247-288 100-144 (174)
5 TIGR02116 toxin_Txe_YoeB toxin 33.6 57 0.0012 24.6 3.5 21 95-116 16-36 (80)
6 PF05973 Gp49: Phage derived p 32.3 1.1E+02 0.0023 23.5 4.9 41 95-135 7-49 (91)
7 TIGR00290 MJ0570_dom MJ0570-re 20.0 1.3E+02 0.0029 27.7 3.8 35 74-109 75-110 (223)
8 TIGR00053 addiction module tox 18.3 1.2E+02 0.0026 23.2 2.7 32 97-128 23-54 (89)
9 PF09328 Phytochelatin_C: Doma 18.3 1.5E+02 0.0032 28.3 3.7 37 47-83 60-96 (264)
10 PF00356 LacI: Bacterial regul 18.1 1.4E+02 0.0031 20.6 2.8 17 93-109 25-41 (46)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=5.5e-34 Score=252.33 Aligned_cols=192 Identities=24% Similarity=0.410 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHhcCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC-CCCcceeEEEEeCCCCCCchhhhhhhhc
Q 022196 71 SAKESLLLAFKDAGGFEALVAGKTTNMQQIDVNERITGLERLNPTPRPTTS-PFLEGRWNFEWFGSGSPGFFVARFIFER 149 (301)
Q Consensus 71 ~aK~~Ll~al~d~~G~~gl~~g~at~~~r~~I~elI~~LEalNPt~~Pt~s-~~L~G~W~LlYTSs~SPgll~~r~L~~r 149 (301)
.+|++|++++.++. +|+ .+++++|++|+++|.+||++||+++|+++ ++|+|+|+|+|||+. +... .+...
T Consensus 2 ~~K~~Ll~~~~~~~--rG~---~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~--~~~~--~l~~~ 72 (198)
T PF04755_consen 2 DLKQELLQAVAGTN--RGL---RASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSP--EIRS--LLQRG 72 (198)
T ss_pred hHHHHHHHHHhccC--CCc---cCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCC--Cccc--ccccc
Confidence 47899999999554 265 67999999999999999999999999998 889999999999974 3331 01111
Q ss_pred CCccccCCCceeEEEecCc-cceeeceE--EeeeeeeEEEEEEEEEEeCCceEEEEEEEEEEeCCccccccchhHHHhhh
Q 022196 150 FPPTLANLSNMDVVIKDGK-ANITANFK--LLNSIESKFSFSTKLLVEGPLRLKEEYIEGILESPTVIEETIPEQLKGAF 226 (301)
Q Consensus 150 ~p~~l~~l~~l~v~iid~~-~k~~~~~~--~~N~v~~~~~v~A~fev~s~~Rv~v~F~~~~l~~p~i~~~~~P~~l~~~~ 226 (301)
.+. ......+. +++|.. .+..|.+. .++.+++.+.+.|+|++.+++|++++|+++.+..+.+.. .++
T Consensus 73 ~~~-~~~~~~v~-Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~--------~~l 142 (198)
T PF04755_consen 73 RLP-GVRVGRVF-QTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLK--------GVL 142 (198)
T ss_pred ccc-cccccceE-EEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceee--------ccc
Confidence 111 11222232 244544 22222222 244457889999999999999999999999998766521 222
Q ss_pred hccccccccCCchhhhhccCCcccCCCC-CceeeEEEEEecCceeEEecCCCcEEEEE
Q 022196 227 NQAVTTVQQLPAPIRDAISGGLRIPLSG-TFQRLFMISYLDEEILIIRDASGIPEVLT 283 (301)
Q Consensus 227 gq~i~~l~~l~~~l~~~~~~~lkiPl~~-~~~gwldiTYLDedLRIsRG~~GsvFVl~ 283 (301)
++.......++..... ..++++|+++ ..+|||+||||||||||+||++|++|||.
T Consensus 143 ~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 143 GPLKDALNNVPRGISD--ELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred hhhhhhhhhccccccc--ccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 2211122222211111 1244555554 34899999999999999999999999984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=52.61 E-value=79 Score=27.18 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCcceeEEE-EeCCCCCCchhhhhhhhcCCccccCCCceeEEEecCccceeeceEEeeeeeeEEEEEEEEEEeCCceEEE
Q 022196 123 FLEGRWNFE-WFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSIESKFSFSTKLLVEGPLRLKE 201 (301)
Q Consensus 123 ~L~G~W~Ll-YTSs~SPgll~~r~L~~r~p~~l~~l~~l~v~iid~~~k~~~~~~~~N~v~~~~~v~A~fev~s~~Rv~v 201 (301)
.|.|-|+|+ |-+. +|+.-+ .+...+.+++...|+. +. |+...+.-.+.++..+.++..++.-...
T Consensus 2 ~l~GVWQ~c~~~~~-~~~~~g----------~l~~~~~lKilS~Dgt--f~-Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E 67 (133)
T PF14869_consen 2 SLQGVWQLCHYVSE-SPEVPG----------KLKPSNVLKILSDDGT--FV-NITMIPKSGAIITGYGTYEQPSDNIYVE 67 (133)
T ss_pred CceEEEEEEEEeec-CcccCc----------eEeecccEEEEcCCCc--EE-EEEEeCCCCcEEEEeEEEEEcCCcccee
Confidence 388999999 5555 555442 1122234555444432 11 3333332356677888899998885555
Q ss_pred EEEEEEEeCC
Q 022196 202 EYIEGILESP 211 (301)
Q Consensus 202 ~F~~~~l~~p 211 (301)
.-++ .+..|
T Consensus 68 ~IeK-nv~lp 76 (133)
T PF14869_consen 68 SIEK-NVHLP 76 (133)
T ss_pred eecc-eecCc
Confidence 5554 44333
No 3
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=48.67 E-value=1.5e+02 Score=24.77 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=27.9
Q ss_pred CceeeEEEEEecCc---eeEEecCCCcEEEEEecCCC
Q 022196 255 TFQRLFMISYLDEE---ILIIRDASGIPEVLTRLDPP 288 (301)
Q Consensus 255 ~~~gwldiTYLDed---LRIsRG~~GsvFVl~R~~~~ 288 (301)
...+-+.|.|+|.+ .-++-.++-.+|||.|...+
T Consensus 80 ~~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~ 116 (143)
T PF08212_consen 80 PPKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQL 116 (143)
T ss_dssp TEEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS-
T ss_pred CCCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCC
Confidence 34789999999988 67787788899999998653
No 4
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=47.26 E-value=63 Score=28.96 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred CcccCCCCCceeeEEEEEecCcee---EEecCCCcEEEEEecCCC
Q 022196 247 GLRIPLSGTFQRLFMISYLDEEIL---IIRDASGIPEVLTRLDPP 288 (301)
Q Consensus 247 ~lkiPl~~~~~gwldiTYLDedLR---IsRG~~GsvFVl~R~~~~ 288 (301)
.||+...+.+.|-+.++|+|.|=+ ++=.|+-.+|++.|.-.+
T Consensus 100 ~LkVsF~~pF~g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~ 144 (174)
T COG3040 100 KLKVSFFGPFYGDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTL 144 (174)
T ss_pred EEEEEecCCccccEEEEEECCCccEEEEeCCCcceEEEEecCCCC
Confidence 356666665569999999999865 455578899999997643
No 5
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=33.55 E-value=57 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCC
Q 022196 95 TNMQQIDVNERITGLERLNPTP 116 (301)
Q Consensus 95 t~~~r~~I~elI~~LEalNPt~ 116 (301)
.++.+..|.++|++|+ .||.+
T Consensus 16 ~~~~~~~i~~~i~~l~-~~P~~ 36 (80)
T TIGR02116 16 DKKLKKKINELIKDVR-RDPFK 36 (80)
T ss_pred CHHHHHHHHHHHHHHH-cCCCC
Confidence 3557888999999887 46654
No 6
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=32.35 E-value=1.1e+02 Score=23.46 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCCCCCCC--cceeEEEEeCC
Q 022196 95 TNMQQIDVNERITGLERLNPTPRPTTSPFL--EGRWNFEWFGS 135 (301)
Q Consensus 95 t~~~r~~I~elI~~LEalNPt~~Pt~s~~L--~G~W~LlYTSs 135 (301)
++..+++|...+..|+..+|...+-....| +|-|+|.....
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~ 49 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGG 49 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeec
Confidence 677889999999999988854333333335 59999998765
No 7
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=19.96 E-value=1.3e+02 Score=27.73 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCcccccCCC-ChHHHHHHHHHHHHH
Q 022196 74 ESLLLAFKDAGGFEALVAGKT-TNMQQIDVNERITGL 109 (301)
Q Consensus 74 ~~Ll~al~d~~G~~gl~~g~a-t~~~r~~I~elI~~L 109 (301)
++|+.+|.+. |.+|+|+|-+ +++||..++...++|
T Consensus 75 e~l~~~l~~~-gv~~vv~GdI~s~~qr~~~e~v~~~l 110 (223)
T TIGR00290 75 EELKGILHTL-DVEAVVFGAIYSEYQKTRIERVCREL 110 (223)
T ss_pred HHHHHHHHHc-CCCEEEECCcccHHHHHHHHHHHHhc
Confidence 4566666655 7888888886 788999998888663
No 8
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=18.35 E-value=1.2e+02 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCccee
Q 022196 97 MQQIDVNERITGLERLNPTPRPTTSPFLEGRW 128 (301)
Q Consensus 97 ~~r~~I~elI~~LEalNPt~~Pt~s~~L~G~W 128 (301)
.++..|.++|..|..-+|.|.......|.|.|
T Consensus 23 ~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~ 54 (89)
T TIGR00053 23 KDLKKLLKKMEELINTLPLPEHYKDHPLRGPW 54 (89)
T ss_pred ccHHHHHHHHHHHHcCCCCCcccCCccCcCCc
Confidence 35677888888887754444433222344433
No 9
>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process
Probab=18.35 E-value=1.5e+02 Score=28.33 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=29.3
Q ss_pred EEEEEEeecccCCccchhhhhhhhHHHHHHHHHHHhc
Q 022196 47 RCKAMVQQAVQGAPAAYAKEMERLSAKESLLLAFKDA 83 (301)
Q Consensus 47 ~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll~al~d~ 83 (301)
.|=|-|.+...|...-..+|++|++.|++.|+.+.++
T Consensus 60 KWVaEVRR~Edg~~~LS~EEk~RL~lKe~VL~Qvr~T 96 (264)
T PF09328_consen 60 KWVAEVRRQEDGGSSLSKEEKERLALKEEVLQQVRET 96 (264)
T ss_pred hhheeEEecccCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666677788999999999999999964
No 10
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=18.13 E-value=1.4e+02 Score=20.60 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=14.9
Q ss_pred CCChHHHHHHHHHHHHH
Q 022196 93 KTTNMQQIDVNERITGL 109 (301)
Q Consensus 93 ~at~~~r~~I~elI~~L 109 (301)
.++++.|++|.+++++|
T Consensus 25 ~vs~~tr~rI~~~a~~l 41 (46)
T PF00356_consen 25 RVSEETRERILEAAEEL 41 (46)
T ss_dssp SSTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 56999999999999776
Done!