Query 022196
Match_columns 301
No_of_seqs 180 out of 314
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 44.0 47 0.0016 27.6 6.0 68 121-206 9-81 (142)
2 4i95_A Putative uncharacterize 39.6 78 0.0027 26.3 6.6 73 121-212 9-86 (142)
3 2a6s_A Toxin YOEB; YEFM, antit 35.8 36 0.0012 24.1 3.7 19 97-116 22-40 (84)
4 1z8m_A Conserved hypothetical 31.8 26 0.00091 25.1 2.4 16 100-115 25-40 (88)
5 2dix_A Interferon-inducible do 25.5 70 0.0024 23.5 3.8 37 41-78 36-73 (84)
6 3bpq_B Toxin RELE3; protein to 25.0 1E+02 0.0035 21.4 4.6 38 95-132 17-58 (88)
7 2cpn_A TAR RNA-binding protein 22.6 59 0.002 24.3 2.9 38 41-78 45-82 (89)
8 2jrh_A Mitogen-activated prote 22.4 1.8E+02 0.006 22.5 5.5 14 218-231 29-42 (94)
9 2b7t_A Double-stranded RNA-spe 22.2 55 0.0019 23.2 2.6 38 41-78 31-68 (73)
10 3adg_A F21M12.9 protein; HYL1, 22.0 80 0.0027 22.3 3.4 37 41-77 31-69 (73)
11 3oei_C RELK (toxin RV3358); to 21.7 1.1E+02 0.0038 23.3 4.4 36 95-132 32-72 (96)
12 2b7v_A Double-stranded RNA-spe 21.6 61 0.0021 22.8 2.7 37 41-77 28-64 (71)
13 1di2_A XLRBPA, double stranded 20.8 69 0.0024 22.3 2.8 37 41-77 29-65 (69)
14 3adj_A F21M12.9 protein; HYL1, 20.3 1E+02 0.0034 22.0 3.7 37 41-78 33-71 (76)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=44.00 E-value=47 Score=27.63 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=38.6
Q ss_pred CCCCcceeEEEEeCCCCCCchhhhhhhhcCCccccCCCceeEEEecCccceeeceEEeeee-----eeEEEEEEEEEEeC
Q 022196 121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSI-----ESKFSFSTKLLVEG 195 (301)
Q Consensus 121 s~~L~G~W~LlYTSs~SPgll~~r~L~~r~p~~l~~l~~l~v~iid~~~k~~~~~~~~N~v-----~~~~~v~A~fev~s 195 (301)
...|.|-|+|++-.+.+|+.-+ + +-..+.+++-.. ++++.|.+ .+.+...+.++..|
T Consensus 9 ~~~L~GvWQ~c~y~~~~~~~~~-----~-----l~~s~~~KIlS~--------DgtF~N~~m~~~~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 9 AADLKGIWQLCHYVSESPDVPG-----A-----LKPSNTFKVLSD--------DGRIVNFTIIPGADAIITGYGTYKQLT 70 (142)
T ss_dssp SCCCCEEEEEEEEEESSTTSCC-----E-----EEEEEEEEEECT--------TSEEEEEECCTTSCCEEEEEEEEEEEE
T ss_pred cccceEEeEEeeEeecCCCCCc-----e-----EeecCceEEECC--------CCcEEEEEEeCCCCcEEEEeEEEEecC
Confidence 3459999999944332444332 1 111123443222 33444443 46677888999999
Q ss_pred CceEEEEEEEE
Q 022196 196 PLRLKEEYIEG 206 (301)
Q Consensus 196 ~~Rv~v~F~~~ 206 (301)
+......-++.
T Consensus 71 D~~Y~E~i~kn 81 (142)
T 4gzv_A 71 DDSYKESIEKN 81 (142)
T ss_dssp TTEEEEEEEEE
T ss_pred CCeeeeeeccc
Confidence 98766655553
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=39.62 E-value=78 Score=26.25 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCCcceeEEEEeCCCCCCchhhhhhhhcCCccccCCCceeEEEecCccceeeceEEeeee-----eeEEEEEEEEEEeC
Q 022196 121 SPFLEGRWNFEWFGSGSPGFFVARFIFERFPPTLANLSNMDVVIKDGKANITANFKLLNSI-----ESKFSFSTKLLVEG 195 (301)
Q Consensus 121 s~~L~G~W~LlYTSs~SPgll~~r~L~~r~p~~l~~l~~l~v~iid~~~k~~~~~~~~N~v-----~~~~~v~A~fev~s 195 (301)
...|.|-|+|+.-.+.+|+.-. . ..|. | .+++ +.. ++++.|.. .+.+...+.++..|
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~g---~--L~ps---n--~lKI--lSd------DgtF~Ni~m~~~~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIPG---V--LKPS---N--TFKV--LSD------DGRIVNFTIRPGTDAIITGYGTYRQIS 70 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSCC---E--EEEE---E--EEEE--ECT------TSEEEEEECCTTSCCEEEEEEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCCce---E--eccC---c--cEEE--EcC------CCcEEEEEEecCCCcEEEEeEEEEecC
Confidence 3349999999954443666542 1 1111 0 2333 222 34455543 46678889999999
Q ss_pred CceEEEEEEEEEEeCCc
Q 022196 196 PLRLKEEYIEGILESPT 212 (301)
Q Consensus 196 ~~Rv~v~F~~~~l~~p~ 212 (301)
+......-++. +..|+
T Consensus 71 D~~Y~E~IeKn-i~lp~ 86 (142)
T 4i95_A 71 AAAYKESIEKN-IHLPM 86 (142)
T ss_dssp TTEEEEEEEEE-SSSGG
T ss_pred Ccceeeeeccc-ccCcc
Confidence 98776666554 44333
No 3
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=35.82 E-value=36 Score=24.11 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q 022196 97 MQQIDVNERITGLERLNPTP 116 (301)
Q Consensus 97 ~~r~~I~elI~~LEalNPt~ 116 (301)
.....|.++|+.|.. ||-+
T Consensus 22 ~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 22 RIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHh-CCCC
Confidence 346788889988865 6754
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=31.84 E-value=26 Score=25.09 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhCCC
Q 022196 100 IDVNERITGLERLNPT 115 (301)
Q Consensus 100 ~~I~elI~~LEalNPt 115 (301)
..+.++++.|...||.
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4577788888644664
No 5
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=25.50 E-value=70 Score=23.50 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=24.1
Q ss_pred hccceeEEEEEEeeccc-CCccchhhhhhhhHHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQ-GAPAAYAKEMERLSAKESLLL 78 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~-~~~~~~a~e~e~~~aK~~Ll~ 78 (301)
-|.+.|.|...+..... |. ...-++.|..+|+..|..
T Consensus 36 ~h~~~F~~~v~v~~~~~~G~-G~SKK~Aeq~AA~~aL~~ 73 (84)
T 2dix_A 36 IHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAEAAINI 73 (84)
T ss_dssp SSSCEEEEEEEETTEEEEEC-SSCTTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEee-eCCHHHHHHHHHHHHHHH
Confidence 36789999999864211 22 234577888888876654
No 6
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=24.96 E-value=1e+02 Score=21.38 Aligned_cols=38 Identities=5% Similarity=-0.062 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCCC-CCCC---CcceeEEEE
Q 022196 95 TNMQQIDVNERITGLERLNPTPRPT-TSPF---LEGRWNFEW 132 (301)
Q Consensus 95 t~~~r~~I~elI~~LEalNPt~~Pt-~s~~---L~G~W~LlY 132 (301)
.+..+..+.++++.++.+...|.+- .... +.|.|++..
T Consensus 17 ~~~~~~~i~~~i~~~~~l~~~P~~~~~~~~l~g~~~~~~~rv 58 (88)
T 3bpq_B 17 PGHIRKRIKLIIEECQNSNSLNDLKLDIKKIKGYHNYYRIRV 58 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCC-CCCCEEECTTSSSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcccCcCcccCceeccCCCCeEEEEE
Confidence 3445667778788877653333311 1111 456666544
No 7
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=22.61 E-value=59 Score=24.32 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=24.0
Q ss_pred hccceeEEEEEEeecccCCccchhhhhhhhHHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLL 78 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll~ 78 (301)
.|.+.|.|...+.....-.....-++.|..+|+..|..
T Consensus 45 ~h~~~F~~~v~i~g~~~~G~G~SKK~Aeq~AA~~AL~~ 82 (89)
T 2cpn_A 45 AHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLR 82 (89)
T ss_dssp SSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEeeeCCHHHHHHHHHHHHHHH
Confidence 46788999999864311111233577788888776653
No 8
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=22.42 E-value=1.8e+02 Score=22.46 Aligned_cols=14 Identities=14% Similarity=0.420 Sum_probs=9.6
Q ss_pred chhHHHhhhhcccc
Q 022196 218 IPEQLKGAFNQAVT 231 (301)
Q Consensus 218 ~P~~l~~~~gq~i~ 231 (301)
+-..++..|||.++
T Consensus 29 l~qkv~~afGq~ld 42 (94)
T 2jrh_A 29 VEHKVTTVFGQPLD 42 (94)
T ss_dssp HHHHHHHHHCSSEE
T ss_pred HHHHHHHHhCCeee
Confidence 55556777888776
No 9
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=22.20 E-value=55 Score=23.23 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=23.9
Q ss_pred hccceeEEEEEEeecccCCccchhhhhhhhHHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLLL 78 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll~ 78 (301)
-|.+.|.|...|...........-++.|..+|+..|..
T Consensus 31 ~h~~~F~~~v~v~g~~~~G~G~SKK~Aeq~AA~~al~~ 68 (73)
T 2b7t_A 31 VHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRS 68 (73)
T ss_dssp SSSCEEEEEEESSSSEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEeecCCHHHHHHHHHHHHHHH
Confidence 46789999998864321112334577787777766653
No 10
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=22.02 E-value=80 Score=22.32 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=24.4
Q ss_pred hccceeEEEEEEeecc--cCCccchhhhhhhhHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAV--QGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~--~~~~~~~a~e~e~~~aK~~Ll 77 (301)
.|.+.|.|.+.|..-. .|.....-++.|..+|+..|.
T Consensus 31 ~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~ 69 (73)
T 3adg_A 31 SHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALR 69 (73)
T ss_dssp TTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHH
Confidence 4789999999986432 233213457788877776664
No 11
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=21.73 E-value=1.1e+02 Score=23.32 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCC-----CCCCCCCCcceeEEEE
Q 022196 95 TNMQQIDVNERITGLERLNPTP-----RPTTSPFLEGRWNFEW 132 (301)
Q Consensus 95 t~~~r~~I~elI~~LEalNPt~-----~Pt~s~~L~G~W~LlY 132 (301)
....+..|.++|++|+ .||-. .|+.. .|.|.|+..-
T Consensus 32 dk~~~krI~~~I~~l~-~nP~~g~gK~e~Lkg-~l~g~~s~RI 72 (96)
T 3oei_C 32 DRKTARRITRLIGEIQ-RDPFSGIGKPEPLQG-ELSGYWSRRI 72 (96)
T ss_dssp CHHHHHHHHHHHHHHH-HCTTSSTTCCEECCG-GGTTCEEEES
T ss_pred CHHHHHHHHHHHHHHH-hCCCcCCCchhhcCC-CCCCcEEEEC
Confidence 4567889999999987 47742 12322 2566666544
No 12
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=21.61 E-value=61 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=23.6
Q ss_pred hccceeEEEEEEeecccCCccchhhhhhhhHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll 77 (301)
.|.+.|.|...+...........-++.|..+|+..|.
T Consensus 28 ~h~~~F~~~v~v~~~~~~G~G~SKK~Aeq~AA~~al~ 64 (71)
T 2b7v_A 28 SHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALA 64 (71)
T ss_dssp TTTCCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEECCEEEEEeeCCHHHHHHHHHHHHHH
Confidence 4678999999986432211133457778777776655
No 13
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=20.80 E-value=69 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=23.3
Q ss_pred hccceeEEEEEEeecccCCccchhhhhhhhHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll 77 (301)
.|.+.|.|...+....+......-++.|..+|+..|.
T Consensus 29 ~h~~~F~~~v~v~~~~~~G~G~sKK~Aeq~AA~~al~ 65 (69)
T 1di2_A 29 PHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLLT 65 (69)
T ss_dssp GGGCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEeecCCHHHHHHHHHHHHHH
Confidence 4678999999986431111133356777777776654
No 14
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=20.29 E-value=1e+02 Score=22.04 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=25.0
Q ss_pred hccceeEEEEEEeec--ccCCccchhhhhhhhHHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQA--VQGAPAAYAKEMERLSAKESLLL 78 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~--~~~~~~~~a~e~e~~~aK~~Ll~ 78 (301)
.|.+.|.|...+..- ..|. ...-++.|..+|+..|..
T Consensus 33 ~h~~~F~~~v~v~g~~~~~G~-G~sKK~Aeq~AA~~al~~ 71 (76)
T 3adj_A 33 GRVTQFTCTVEIGGIKYTGAA-TRTKKDAEISAGRTALLA 71 (76)
T ss_dssp SSCEEEEEEEEETTEEEECCC-BSSHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEECCEEEEEec-cCCHHHHHHHHHHHHHHH
Confidence 467899999998642 2233 344678888888876653
Done!