Query 022196
Match_columns 301
No_of_seqs 180 out of 314
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 15:30:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b7ta1 d.50.1.1 (A:1-73) dsRN 30.0 15 0.0011 24.8 2.6 39 40-79 30-69 (73)
2 d2b7va1 d.50.1.1 (A:1-71) dsRN 25.9 21 0.0015 23.9 2.7 38 40-77 27-64 (71)
3 d1x48a1 d.50.1.1 (A:8-83) dsRN 23.2 31 0.0022 23.3 3.2 42 40-81 25-67 (76)
4 d2dixa1 d.50.1.1 (A:7-79) Inte 21.9 36 0.0026 22.5 3.3 37 41-77 30-66 (73)
5 d1w91a1 b.71.1.2 (A:4-13,A:361 21.9 54 0.0039 25.2 4.8 23 261-283 11-33 (152)
6 d1qu6a2 d.50.1.1 (A:91-179) ds 20.9 45 0.0032 23.0 3.8 41 41-81 41-82 (89)
7 d1mu2a2 e.8.1.2 (A:3-429) HIV- 20.6 32 0.0023 31.0 3.6 40 94-133 24-74 (427)
8 d2cpna1 d.50.1.1 (A:150-225) T 20.6 31 0.0023 23.0 2.8 38 40-77 37-74 (76)
9 d2nptb1 d.15.2.2 (B:42-123) Mi 18.7 1.2E+02 0.0087 21.1 5.6 14 218-231 27-40 (82)
10 d1qpza1 a.35.1.5 (A:2-58) Puri 17.6 44 0.0032 21.6 2.8 18 93-110 26-43 (57)
No 1
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.00 E-value=15 Score=24.77 Aligned_cols=39 Identities=15% Similarity=0.033 Sum_probs=24.7
Q ss_pred hhccceeEEEEEEeeccc-CCccchhhhhhhhHHHHHHHHH
Q 022196 40 RRIRRRLRCKAMVQQAVQ-GAPAAYAKEMERLSAKESLLLA 79 (301)
Q Consensus 40 ~~~~r~~~~~a~v~~~~~-~~~~~~a~e~e~~~aK~~Ll~a 79 (301)
--|.+.|.|.+.|..-.. |. ...-++.+..+|+..|...
T Consensus 30 ~~h~~~F~~~v~v~~~~~~g~-G~SKK~Aeq~AA~~aL~~l 69 (73)
T d2b7ta1 30 PVHAPLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSF 69 (73)
T ss_dssp SSSSCEEEEEEESSSSEEEEE-ESSHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEECCEEEEcC-CCcHHHHHHHHHHHHHHHH
Confidence 356788999999864322 22 3335677777777666544
No 2
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.85 E-value=21 Score=23.90 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=23.0
Q ss_pred hhccceeEEEEEEeecccCCccchhhhhhhhHHHHHHH
Q 022196 40 RRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 40 ~~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll 77 (301)
--|.+.|.|++.|..-..-.....-++.+..+|+..|.
T Consensus 27 ~~h~~~F~~~v~v~~~~~~g~G~SKK~Ak~~AA~~aL~ 64 (71)
T d2b7va1 27 ESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALA 64 (71)
T ss_dssp CTTTCCEEEEEECSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEECCEEEEecCCCHHHHHHHHHHHHHH
Confidence 34678899999986432211123346777776665554
No 3
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.18 E-value=31 Score=23.33 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=28.1
Q ss_pred hhccceeEEEEEEeecccCCc-cchhhhhhhhHHHHHHHHHHH
Q 022196 40 RRIRRRLRCKAMVQQAVQGAP-AAYAKEMERLSAKESLLLAFK 81 (301)
Q Consensus 40 ~~~~r~~~~~a~v~~~~~~~~-~~~a~e~e~~~aK~~Ll~al~ 81 (301)
..|.+.|.|.+.|..-.-+.. ...-+|.+..+|+..|.....
T Consensus 25 ~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~ 67 (76)
T d1x48a1 25 SELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLK 67 (76)
T ss_dssp SSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHc
Confidence 457789999999975432211 233578888888877775444
No 4
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.90 E-value=36 Score=22.50 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=22.9
Q ss_pred hccceeEEEEEEeecccCCccchhhhhhhhHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll 77 (301)
-|.+.|.|.+.+.....-.....-++.+..+|+..|.
T Consensus 30 ~h~~~F~~~v~v~~~~~~g~g~sKK~Aeq~AA~~al~ 66 (73)
T d2dixa1 30 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAIN 66 (73)
T ss_dssp SSSCEEEEEEEETTEEEEECSSCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEEEEEeccccHHHHHHHHHHHHHH
Confidence 4678899999986432211123356777777776555
No 5
>d1w91a1 b.71.1.2 (A:4-13,A:361-502) Beta-D-xylosidase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.85 E-value=54 Score=25.18 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEecCceeEEecCCCcEEEEE
Q 022196 261 MISYLDEEILIIRDASGIPEVLT 283 (301)
Q Consensus 261 diTYLDedLRIsRG~~GsvFVl~ 283 (301)
++.|=|+++.++|..+|.+=|+.
T Consensus 11 ell~~d~~~lvTr~~dg~v~il~ 33 (152)
T d1w91a1 11 ELLYRDGEMIVTRRKDGSIAAVL 33 (152)
T ss_dssp EEEEEETTEEEEECTTSCEEEEE
T ss_pred hhhhcCCCEEEEecCCCCEEEEE
Confidence 99999999999998888877665
No 6
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.87 E-value=45 Score=23.01 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=26.6
Q ss_pred hccceeEEEEEEeecccCCc-cchhhhhhhhHHHHHHHHHHH
Q 022196 41 RIRRRLRCKAMVQQAVQGAP-AAYAKEMERLSAKESLLLAFK 81 (301)
Q Consensus 41 ~~~r~~~~~a~v~~~~~~~~-~~~a~e~e~~~aK~~Ll~al~ 81 (301)
-|.+.|.|.+.|..-.-+.. ...-++.+..+|+..|.....
T Consensus 41 ~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~ 82 (89)
T d1qu6a2 41 HGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILS 82 (89)
T ss_dssp SSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHc
Confidence 34678999999974432222 233577888888877765444
No 7
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=20.63 E-value=32 Score=31.01 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCCC-----CCCCCCCC------cceeEEEEe
Q 022196 94 TTNMQQIDVNERITGLERLNPTP-----RPTTSPFL------EGRWNFEWF 133 (301)
Q Consensus 94 at~~~r~~I~elI~~LEalNPt~-----~Pt~s~~L------~G~W~LlYT 133 (301)
.++++++++.+.|++|+..+-.. .|-.+|.+ .|+||++--
T Consensus 24 l~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 24 LTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 48999999999999999998442 33344442 499999843
No 8
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=31 Score=23.00 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=23.8
Q ss_pred hhccceeEEEEEEeecccCCccchhhhhhhhHHHHHHH
Q 022196 40 RRIRRRLRCKAMVQQAVQGAPAAYAKEMERLSAKESLL 77 (301)
Q Consensus 40 ~~~~r~~~~~a~v~~~~~~~~~~~a~e~e~~~aK~~Ll 77 (301)
..|.+.|.|++.+.....-.....-++.+..+|+..|.
T Consensus 37 ~~h~~~F~~~v~v~~~~~~g~G~SKK~Aeq~AA~~aL~ 74 (76)
T d2cpna1 37 PAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLL 74 (76)
T ss_dssp CSSSCEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCCccEEEEEEecceeeccccccHHHHHHHHHHHHHH
Confidence 35678899999885432211233456777777776665
No 9
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.67 E-value=1.2e+02 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=9.7
Q ss_pred chhHHHhhhhcccc
Q 022196 218 IPEQLKGAFNQAVT 231 (301)
Q Consensus 218 ~P~~l~~~~gq~i~ 231 (301)
+-..++..|||.++
T Consensus 27 l~~kv~~afGq~ld 40 (82)
T d2nptb1 27 LRSKAKIAFGQSMD 40 (82)
T ss_dssp HHHHHHHHHTSCEE
T ss_pred HHHHHHHHhCCeee
Confidence 45556677888776
No 10
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.59 E-value=44 Score=21.61 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHHHHHH
Q 022196 93 KTTNMQQIDVNERITGLE 110 (301)
Q Consensus 93 ~at~~~r~~I~elI~~LE 110 (301)
.++++.|+.|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 568999999999997663
Done!