Query 022197
Match_columns 301
No_of_seqs 139 out of 759
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.1 0.00085 2.9E-08 51.8 6.4 71 88-160 34-105 (110)
2 2i68_A Protein EMRE; transmemb 96.8 0.0007 2.4E-08 54.5 3.5 71 88-160 34-105 (137)
3 2i68_A Protein EMRE; transmemb 34.5 11 0.00037 29.7 0.7 47 252-298 42-94 (137)
4 2nml_A Enhancer of rudimentary 10.0 2.4E+02 0.0082 20.9 3.3 22 177-198 25-46 (104)
5 1mzw_B U4/U6 snRNP 60KDA prote 7.8 42 0.0015 19.3 -1.3 19 6-24 10-28 (31)
6 3ukw_C Bimax1 peptide; arm rep 6.2 1.5E+02 0.0051 16.0 0.4 9 2-10 15-23 (28)
7 2rqx_A PMRD, polymyxin B resis 5.3 4.1E+02 0.014 18.9 2.4 24 1-24 55-78 (89)
8 2ao6_B NCOA-2, 14-MER fragment 4.0 1.9E+02 0.0064 15.5 -0.1 8 100-107 14-21 (26)
9 2jso_A Polymyxin resistance pr 3.0 4.8E+02 0.016 18.5 1.2 24 1-24 56-79 (88)
10 1vf5_F Protein PET M; photosyn 2.4 9.3E+02 0.032 14.0 1.8 15 143-157 5-19 (35)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.14 E-value=0.00085 Score=51.84 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHH-hhccchhhhhhhhhccccccccCcchhhHHhHHHHHhhheeccC
Q 022197 88 VKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (301)
Q Consensus 88 ~~~s~~~~~~~~l~n~aL~yvs~p~~~v~-Ks~k~i~vml~~~l~~gl~kry~~~~~~~v~~i~~Gv~lf~~~~ 160 (301)
....+.+..+..+-+.++|++|.+..-.. .+..|+.+.+.++++ ++|+.++.|++.+.++..|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~--~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33345677777888899999999998777 999999999999999 899999999999999999999887755
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.83 E-value=0.0007 Score=54.51 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHH-hhccchhhhhhhhhccccccccCcchhhHHhHHHHHhhheeccC
Q 022197 88 VKLSAVLMGSHGLTKGSLAFLNYPAQLMF-KSTKVLPVMVMGAFIPGLRRKYPAHEYVSALLLVVGLILFTLAD 160 (301)
Q Consensus 88 ~~~s~~~~~~~~l~n~aL~yvs~p~~~v~-Ks~k~i~vml~~~l~~gl~kry~~~~~~~v~~i~~Gv~lf~~~~ 160 (301)
....+++..+..+-+.++++++.+.--.+ .+..|+.++++++++ ++++.++.+++.+.++.+|+.+....+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~--lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF--FGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHH--HC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445677788899999999999966555 999999999999999 899999999999999999999887654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=34.51 E-value=11 Score=29.68 Aligned_cols=47 Identities=4% Similarity=-0.135 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHH-HHHHHHhhh-----hcccccccccceeEEEe
Q 022197 252 IGQVSVLSLIALFGAATTAMV-NPSHKLEAF-----PQFHNVNILTCEYACLV 298 (301)
Q Consensus 252 ~g~~~i~~~i~~~galt~svv-~t~Rk~~si-----llg~~~~~~~~~G~~lv 298 (301)
++.++....+++.++-+...+ +.+--+++. ++|+++++.+|+|++++
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LI 94 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLI 94 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 344444445554443333233 333333332 34999999999988765
No 4
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=9.96 E-value=2.4e+02 Score=20.93 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.7
Q ss_pred HHHHHHhhhHHHHHHHHhhCCC
Q 022197 177 GALIMDSFLGNLQEAIFTMNPE 198 (301)
Q Consensus 177 ~sl~~dg~~~~~qe~l~~~~~~ 198 (301)
+..++||+...++|++.+.++.
T Consensus 25 v~~~megiC~iYE~~LK~~nP~ 46 (104)
T 2nml_A 25 VNECMEGVCKMYEEHLKRMNPN 46 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 5679999999999999887653
No 5
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=7.79 E-value=42 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=14.4
Q ss_pred ccceeEEeeecCCCchhHH
Q 022197 6 EQTRSLFGISLTDRPKWQQ 24 (301)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (301)
.+|+++|||+-.++..+++
T Consensus 10 gePi~lFGE~~~~Rr~RLr 28 (31)
T 1mzw_B 10 GEPITLFGEGPAERRERLR 28 (31)
T ss_dssp TCCSEETTCCHHHHHHHHH
T ss_pred CCCeeecCCChHHHHHHHH
Confidence 5789999998777765543
No 6
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=6.20 E-value=1.5e+02 Score=16.01 Aligned_cols=9 Identities=33% Similarity=0.649 Sum_probs=5.9
Q ss_pred CCcccccee
Q 022197 2 NKNEEQTRS 10 (301)
Q Consensus 2 ~~~~~~~~~ 10 (301)
+.|||+|+|
T Consensus 15 dedeepprk 23 (28)
T 3ukw_C 15 DEDEEPPRK 23 (28)
T ss_dssp CGGGSCCSS
T ss_pred ccccCcchh
Confidence 357777765
No 7
>2rqx_A PMRD, polymyxin B resistance protein; signaling protein; NMR {Klebsiella pneumoniae}
Probab=5.26 E-value=4.1e+02 Score=18.87 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=16.8
Q ss_pred CCCccccceeEEeeecCCCchhHH
Q 022197 1 MNKNEEQTRSLFGISLTDRPKWQQ 24 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (301)
.|+|++|++|+..-+-=....|.+
T Consensus 55 iNrn~~~tvKii~As~Ys~eeW~~ 78 (89)
T 2rqx_A 55 LNNNPTQTLKIRNATHYSSERWTN 78 (89)
T ss_dssp ETTCTTSEEEEEEEESCCHHHHHH
T ss_pred hcCCCCceEEEEeccccCHHHHHH
Confidence 389999999998766544444543
No 8
>2ao6_B NCOA-2, 14-MER fragment of nuclear receptor coactivator 2; , human androgen receptor ligand binding domain; HET: R18; 1.89A {Homo sapiens}
Probab=3.96 E-value=1.9e+02 Score=15.47 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=5.0
Q ss_pred HHHHHhhc
Q 022197 100 LTKGSLAF 107 (301)
Q Consensus 100 l~n~aL~y 107 (301)
=+|.|++|
T Consensus 14 dgnaalry 21 (26)
T 2ao6_B 14 DGNAALRY 21 (26)
T ss_pred cchHHHHH
Confidence 35666666
No 9
>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling Pro; NMR {Escherichia coli}
Probab=3.02 E-value=4.8e+02 Score=18.50 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=16.7
Q ss_pred CCCccccceeEEeeecCCCchhHH
Q 022197 1 MNKNEEQTRSLFGISLTDRPKWQQ 24 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (301)
.|+|+++++|+..-+-=....|.+
T Consensus 56 iNrn~~~tvKii~As~Ys~~eW~~ 79 (88)
T 2jso_A 56 INREKLHTVKVLSASSYSPDEWER 79 (88)
T ss_dssp EBTEEEEEEEEEEEEECCHHHHHH
T ss_pred hcCCCCceEEEEeccccCHHHHHH
Confidence 388899999988766554555544
No 10
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=2.37 E-value=9.3e+02 Score=14.03 Aligned_cols=15 Identities=40% Similarity=0.525 Sum_probs=7.0
Q ss_pred hhHHhHHHHHhhhee
Q 022197 143 YVSALLLVVGLILFT 157 (301)
Q Consensus 143 ~~~v~~i~~Gv~lf~ 157 (301)
++....++.|.+++.
T Consensus 5 If~~A~i~~~LvLvG 19 (35)
T 1vf5_F 5 MLYAALLSFGLIFVG 19 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555554443
Done!