Query 022197
Match_columns 301
No_of_seqs 139 out of 759
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 15:31:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022197.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022197hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nmla1 d.330.1.1 (A:2-101) En 15.5 61 0.0045 22.2 3.3 22 177-198 24-45 (100)
2 d2p7tc1 f.14.1.1 (C:86-119) Po 4.4 1.2E+02 0.009 15.8 0.7 14 142-155 4-17 (34)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 2.9 4.5E+02 0.033 13.9 2.4 15 22-36 19-33 (37)
4 d1oyja2 c.47.1.5 (A:2-85) Clas 2.7 2.3E+02 0.017 17.7 1.0 28 4-31 1-28 (84)
5 d2dk4a1 a.140.6.1 (A:8-70) Pre 2.3 75 0.0055 19.8 -1.9 19 6-24 33-51 (63)
6 d1pv7a_ f.38.1.2 (A:) Lactose 2.1 1.1E+03 0.083 16.9 9.7 23 136-158 284-306 (417)
7 d1ss4a_ d.32.1.6 (A:) Hypothet 1.9 5.2E+02 0.038 16.6 2.2 25 1-25 2-26 (149)
8 d1rh5b_ f.23.28.1 (B:) Preprot 1.7 8.6E+02 0.063 14.1 3.1 16 135-150 15-30 (56)
9 d1di0a_ c.16.1.1 (A:) Lumazine 1.7 2.3E+02 0.017 20.2 -0.3 31 108-140 49-79 (148)
10 d1rkla_ f.23.30.1 (A:) Oligosa 1.6 3.6E+02 0.026 14.1 0.5 12 146-157 9-20 (36)
No 1
>d2nmla1 d.330.1.1 (A:2-101) Enhancer of rudimentary homolog, ERH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.50 E-value=61 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.8
Q ss_pred HHHHHHhhhHHHHHHHHhhCCC
Q 022197 177 GALIMDSFLGNLQEAIFTMNPE 198 (301)
Q Consensus 177 ~sl~~dg~~~~~qe~l~~~~~~ 198 (301)
+..++||+...++|++.+.++.
T Consensus 24 v~~cmegiC~iYEe~Lk~~~p~ 45 (100)
T d2nmla1 24 VNECMEGVCKMYEEHLKRMNPN 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 5689999999999999887654
No 2
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=4.42 E-value=1.2e+02 Score=15.77 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=9.3
Q ss_pred hhhHHhHHHHHhhh
Q 022197 142 EYVSALLLVVGLIL 155 (301)
Q Consensus 142 ~~~~v~~i~~Gv~l 155 (301)
+.+++.++++|+.-
T Consensus 4 rcvavvvmvagits 17 (34)
T d2p7tc1 4 RCVAVVVMVAGITS 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeccch
Confidence 45667777777653
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.89 E-value=4.5e+02 Score=13.95 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHH
Q 022197 22 WQQFLICSSGFFFGY 36 (301)
Q Consensus 22 ~~~~~~~~~gi~~~~ 36 (301)
|-.+++++.||.++-
T Consensus 19 ~GlLlifvl~vLFss 33 (37)
T d2axtl1 19 LGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335788888877653
No 4
>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}
Probab=2.69 E-value=2.3e+02 Score=17.71 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=16.3
Q ss_pred ccccceeEEeeecCCCchhHHHHHHHHH
Q 022197 4 NEEQTRSLFGISLTDRPKWQQFLICSSG 31 (301)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g 31 (301)
.||++.++.|-..+-...+.++++---|
T Consensus 1 a~~~~l~Ly~~~~Sp~~~rvr~~L~~kg 28 (84)
T d1oyja2 1 AEEKELVLLDFWVSPFGQRCRIAMAEKG 28 (84)
T ss_dssp CCSCCEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCCceEEEcCCCChHHHHHHHHHHHcC
Confidence 4788888888655444444444444333
No 5
>d2dk4a1 a.140.6.1 (A:8-70) Pre-mRNA-splicing factor 18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.27 E-value=75 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=14.4
Q ss_pred ccceeEEeeecCCCchhHH
Q 022197 6 EQTRSLFGISLTDRPKWQQ 24 (301)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (301)
.+|+.+||++-.++..+++
T Consensus 33 gePI~lFGE~~~~rr~RLr 51 (63)
T d2dk4a1 33 GEPIRLFGETDYDAFQRLR 51 (63)
T ss_dssp TCCSSCTTCCHHHHHHHHH
T ss_pred CCCeehhcCChHHHHHHHH
Confidence 3578899998887777664
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.13 E-value=1.1e+03 Score=16.91 Aligned_cols=23 Identities=0% Similarity=-0.038 Sum_probs=13.2
Q ss_pred cccCcchhhHHhHHHHHhhheec
Q 022197 136 RKYPAHEYVSALLLVVGLILFTL 158 (301)
Q Consensus 136 kry~~~~~~~v~~i~~Gv~lf~~ 158 (301)
+|...++.+.+..+..++....+
T Consensus 284 ~r~~~~~~~~~~~~~~~~~~~~~ 306 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHhhhcc
Confidence 67777776655555555544433
No 7
>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}
Probab=1.89 E-value=5.2e+02 Score=16.62 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=19.6
Q ss_pred CCCccccceeEEeeecCCCchhHHH
Q 022197 1 MNKNEEQTRSLFGISLTDRPKWQQF 25 (301)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (301)
|+|+.-....+.++..++..+..+|
T Consensus 2 m~~~~~~ri~Hv~i~v~Dle~s~~F 26 (149)
T d1ss4a_ 2 MAKNKLLRMDNVSIVVESLDNAISF 26 (149)
T ss_dssp CTTCCEEEEEEEEEECSCHHHHHHH
T ss_pred CCCCCCCEEeEEEEEeCCHHHHHHH
Confidence 7778778888888888888776554
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.70 E-value=8.6e+02 Score=14.11 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=11.4
Q ss_pred ccccCcchhhHHhHHH
Q 022197 135 RRKYPAHEYVSALLLV 150 (301)
Q Consensus 135 ~kry~~~~~~~v~~i~ 150 (301)
-+++++.++..+..++
T Consensus 15 ~~KP~~~Ef~~ia~v~ 30 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVT 30 (56)
T ss_dssp EECCCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHH
Confidence 4788888886665554
No 9
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=1.69 E-value=2.3e+02 Score=20.23 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=23.4
Q ss_pred cchHHHHHHhhccchhhhhhhhhccccccccCc
Q 022197 108 LNYPAQLMFKSTKVLPVMVMGAFIPGLRRKYPA 140 (301)
Q Consensus 108 vs~p~~~v~Ks~k~i~vml~~~l~~gl~kry~~ 140 (301)
+|+..+.+.|+-+.--+..+|.+++| +.++.
T Consensus 49 iP~aa~~l~~~~~~daiI~lG~VIkG--eT~H~ 79 (148)
T d1di0a_ 49 IPLHAKTLARTGRYAAIVGAAFVIDG--GIYDH 79 (148)
T ss_dssp HHHHHHHHHHTSCCSEEEEEEECCCC--SSBCC
T ss_pred hHHHHHHHHhhcccCeEEEEEEEecC--CchHH
Confidence 66777788888888888888888865 65554
No 10
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.62 E-value=3.6e+02 Score=14.14 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=6.7
Q ss_pred HhHHHHHhhhee
Q 022197 146 ALLLVVGLILFT 157 (301)
Q Consensus 146 v~~i~~Gv~lf~ 157 (301)
-+.+++|+.+.+
T Consensus 9 ~~~i~fgi~mmt 20 (36)
T d1rkla_ 9 SLAITFGIVMMT 20 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred cEEeehhHHHHH
Confidence 445566666554
Done!