BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022198
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 18/178 (10%)
Query: 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-----SKGLSVTTV 183
+L W PTY +V HF L +S L L GW++D + + G+ T+
Sbjct: 271 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330
Query: 184 RKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQ-DIAPRY-S 241
I + ++ PA +P + ++CM G + L H ++AP+ +
Sbjct: 331 VTIATIVYWMNPA---------GNPTVDMICMIVI-GFLIYGPVMLIGLHALELAPKKAA 380
Query: 242 GVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298
G G + G L G V +A GY + WD F V +G ++ + + GEK
Sbjct: 381 GTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 438
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 205 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 257
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 258 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 292
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRINHYLGKEMVQNI 188
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 205 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 257
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 258 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 292
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|4H0A|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
pdb|4H0A|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
Length = 323
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 253 VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT---AVWNLFSTGEKV 299
VL FG A Y + G + VFK Y+V T + ++++TGEKV
Sbjct: 51 VLTSKFGQADRVYPFRDGYKNYVFKDKNSYYIVSTKREEIVSVYATGEKV 100
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 205 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 257
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 258 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 292
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 205 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 257
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 258 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 292
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 205 VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV------- 257
D+ + AVL A + D F G + +APR+ G + + G+LA
Sbjct: 87 TDAASYAVLKEAIEEAADKFDIDGNRIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMI 146
Query: 258 ---FGTA-ATGYILQH---GSWDDVFKVSVGLYLVGTAVWNL 292
FGT+ T LQ+ ++DD + YL V N+
Sbjct: 147 EKPFGTSYDTAAELQNDLENAFDDNQLFRIDHYLGKEMVQNI 188
>pdb|3FYN|A Chain A, Crystal Structure From The Mobile Metagenome Of Cole
Harbour Salt Marsh: Integron Cassette Protein Hfx_cass3
Length = 176
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 157 LTMAFSANLGG---WIADTLVS-----KGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208
LT+ FS GG ++ D V KGL ++ + Q LG L + D P
Sbjct: 88 LTLGFSXEYGGLRGFVDDFFVRPNARGKGLGAAALQTVKQGCCDLGVRALLVETGPEDHP 147
Query: 209 AMAVLCMACSQGTDAFSQSGLYSNHQDIAP 238
A V A F +SG Q +AP
Sbjct: 148 ARGVYSRA------GFEESGRXLLGQALAP 171
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 49 PSVFYSFGSLGTVWFTVWLSKAHSSP 74
P+ F S G + T W + W S AH P
Sbjct: 614 PASFASDGDMNTFWHSKWSSPAHEGP 639
>pdb|2IUM|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUN|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|D Chain D, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|E Chain E, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|F Chain F, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
Length = 248
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 31 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT-----VWLSKAHSSPAEDPQLRPAEK 85
G+ T L FSP + +G + + S+ + W+ V +K H P QL+ A
Sbjct: 134 GATTAL-FSP---NPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASG 189
Query: 86 KLIVSSCASKEPVKTIPWGLI 106
+L+V+ A+K PV+T + LI
Sbjct: 190 ELVVA--AAKSPVQTTKYELI 208
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 126
E+ L ++ E ++ + L+L +P W V+ CH+W T
Sbjct: 59 ERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHT 101
>pdb|2J1A|A Chain A, Structure Of Cbm32 From Clostridium Perfringens Beta-N-
Acetylhexosaminidase Gh84c In Complex With Galactose
pdb|2J1E|A Chain A, High Resolution Crystal Structure Of Cbm32 From A
N-Acetyl- Beta-Hexosaminidase In Complex With Lacnac
Length = 150
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 49 PSVFYSFGSLGTVWFTVWLSKAHSSP 74
P+ F S G + T W + W S AH P
Sbjct: 27 PASFASDGDMNTFWHSKWSSPAHEGP 52
>pdb|2J7M|A Chain A, Characterization Of A Family 32 Cbm
Length = 149
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 49 PSVFYSFGSLGTVWFTVWLSKAHSSP 74
P+ F S G + T W + W S AH P
Sbjct: 26 PASFASDGDMNTFWHSKWSSPAHEGP 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,127,114
Number of Sequences: 62578
Number of extensions: 364788
Number of successful extensions: 675
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 14
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)