Query 022198
Match_columns 301
No_of_seqs 124 out of 1444
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2532 Permease of the major 100.0 2.2E-37 4.7E-42 285.8 26.4 298 1-298 146-451 (466)
2 COG2271 UhpC Sugar phosphate p 100.0 6.6E-32 1.4E-36 238.5 19.4 285 2-293 136-433 (448)
3 TIGR00894 2A0114euk Na(+)-depe 100.0 3.3E-30 7.2E-35 240.9 30.6 298 1-298 149-454 (465)
4 TIGR00903 2A0129 major facilit 100.0 5.9E-28 1.3E-32 219.0 24.7 264 3-291 98-362 (368)
5 COG2814 AraJ Arabinose efflux 100.0 9.7E-28 2.1E-32 214.2 24.8 262 3-293 121-385 (394)
6 PRK09556 uhpT sugar phosphate 100.0 1.1E-27 2.5E-32 224.0 21.7 282 2-291 141-446 (467)
7 PRK11663 regulatory protein Uh 100.0 3.8E-27 8.2E-32 218.5 24.4 284 2-292 130-422 (434)
8 TIGR00893 2A0114 d-galactonate 100.0 6.3E-26 1.4E-30 205.5 29.1 287 2-290 101-395 (399)
9 TIGR02332 HpaX 4-hydroxyphenyl 100.0 2.8E-26 6E-31 211.3 24.0 272 2-283 115-410 (412)
10 PRK10406 alpha-ketoglutarate t 99.9 2.5E-25 5.3E-30 206.2 25.5 276 2-301 143-431 (432)
11 PRK11273 glpT sn-glycerol-3-ph 99.9 8.4E-25 1.8E-29 203.8 27.1 285 2-291 139-432 (452)
12 PRK03545 putative arabinose tr 99.9 1E-24 2.2E-29 199.4 26.9 263 2-293 116-379 (390)
13 TIGR00712 glpT glycerol-3-phos 99.9 7.4E-25 1.6E-29 203.4 23.0 290 2-297 137-436 (438)
14 PLN00028 nitrate transmembrane 99.9 2E-24 4.3E-29 202.5 25.4 279 4-293 144-432 (476)
15 COG2223 NarK Nitrate/nitrite t 99.9 1.4E-24 3.1E-29 192.3 19.0 268 3-293 124-400 (417)
16 PRK10642 proline/glycine betai 99.9 1.5E-23 3.2E-28 197.4 26.5 276 2-289 137-425 (490)
17 PRK09952 shikimate transporter 99.9 1.7E-23 3.7E-28 194.3 26.2 277 2-298 144-437 (438)
18 TIGR00897 2A0118 polyol permea 99.9 9.5E-23 2.1E-27 187.2 26.7 269 3-290 125-397 (402)
19 TIGR00899 2A0120 sugar efflux 99.9 9.1E-23 2E-27 184.8 24.9 264 2-292 106-372 (375)
20 PRK11010 ampG muropeptide tran 99.9 2E-22 4.3E-27 189.6 27.0 271 2-293 126-402 (491)
21 PRK03699 putative transporter; 99.9 1.5E-22 3.2E-27 185.4 24.3 259 2-288 114-374 (394)
22 PRK11551 putative 3-hydroxyphe 99.9 3.4E-22 7.4E-27 183.4 25.9 264 2-289 122-391 (406)
23 PRK09705 cynX putative cyanate 99.9 3.1E-22 6.6E-27 183.3 25.4 263 2-294 116-381 (393)
24 PRK15011 sugar efflux transpor 99.9 2.8E-22 6.1E-27 183.5 25.1 262 2-292 124-389 (393)
25 TIGR00881 2A0104 phosphoglycer 99.9 3E-23 6.6E-28 187.4 17.8 267 2-275 102-378 (379)
26 TIGR00890 2A0111 Oxalate/Forma 99.9 3.9E-22 8.4E-27 180.0 23.0 261 3-287 111-375 (377)
27 PRK10091 MFS transport protein 99.9 6.4E-22 1.4E-26 180.5 24.4 262 3-293 111-375 (382)
28 PRK10213 nepI ribonucleoside t 99.9 2.4E-21 5.2E-26 177.5 28.0 255 2-286 127-383 (394)
29 PRK15075 citrate-proton sympor 99.9 1.1E-21 2.5E-26 181.9 24.2 250 2-272 136-397 (434)
30 TIGR00710 efflux_Bcr_CflA drug 99.9 4.5E-21 9.8E-26 174.2 27.3 254 2-276 112-368 (385)
31 TIGR00887 2A0109 phosphate:H+ 99.9 1.3E-21 2.9E-26 184.6 24.2 290 2-300 134-496 (502)
32 PRK14995 methyl viologen resis 99.9 1.5E-21 3.2E-26 184.1 23.6 255 2-268 113-412 (495)
33 TIGR00900 2A0121 H+ Antiporter 99.9 2.5E-21 5.5E-26 174.1 23.3 249 2-270 111-364 (365)
34 PRK15402 multidrug efflux syst 99.9 1.3E-20 2.7E-25 173.2 28.1 252 2-274 120-375 (406)
35 PRK15034 nitrate/nitrite trans 99.9 2.2E-21 4.8E-26 178.7 22.7 268 2-298 146-459 (462)
36 TIGR00883 2A0106 metabolite-pr 99.9 1.2E-21 2.6E-26 177.8 20.4 261 2-283 115-390 (394)
37 TIGR01299 synapt_SV2 synaptic 99.9 4E-21 8.7E-26 186.5 24.6 287 2-300 274-741 (742)
38 PRK10489 enterobactin exporter 99.9 5.6E-21 1.2E-25 176.2 23.8 267 2-292 129-398 (417)
39 KOG2533 Permease of the major 99.9 1.1E-21 2.4E-26 182.1 19.1 174 1-174 152-337 (495)
40 PRK12307 putative sialic acid 99.9 6.9E-21 1.5E-25 175.8 22.9 256 2-276 125-390 (426)
41 PRK11902 ampG muropeptide tran 99.9 3E-20 6.6E-25 170.6 26.5 266 2-290 113-386 (402)
42 TIGR00892 2A0113 monocarboxyla 99.9 3.2E-21 6.9E-26 179.9 20.0 278 2-288 127-415 (455)
43 TIGR00711 efflux_EmrB drug res 99.9 8.3E-21 1.8E-25 178.0 22.7 256 2-269 109-410 (485)
44 PRK11102 bicyclomycin/multidru 99.9 7.8E-20 1.7E-24 166.0 28.3 163 2-176 98-260 (377)
45 TIGR00891 2A0112 putative sial 99.9 6.9E-21 1.5E-25 173.9 21.4 268 2-279 119-401 (405)
46 TIGR00879 SP MFS transporter, 99.9 8.4E-21 1.8E-25 176.4 20.8 284 2-293 146-469 (481)
47 PRK10504 putative transporter; 99.9 7.8E-20 1.7E-24 171.1 26.7 260 2-272 117-418 (471)
48 PF07690 MFS_1: Major Facilita 99.9 7.1E-22 1.5E-26 176.9 12.2 245 2-260 104-352 (352)
49 PRK09874 drug efflux system pr 99.9 4.3E-20 9.3E-25 169.3 23.8 269 2-296 125-400 (408)
50 TIGR02718 sider_RhtX_FptX side 99.9 1.4E-19 3.1E-24 165.4 26.1 261 3-288 117-385 (390)
51 TIGR00902 2A0127 phenyl propri 99.9 1.1E-19 2.5E-24 165.7 24.1 260 2-289 113-374 (382)
52 PRK05122 major facilitator sup 99.9 1.6E-19 3.4E-24 165.4 25.1 256 2-293 131-388 (399)
53 TIGR00886 2A0108 nitrite extru 99.9 1.8E-20 3.9E-25 169.3 18.1 243 3-256 110-366 (366)
54 TIGR01272 gluP glucose/galacto 99.9 2.7E-19 5.9E-24 158.6 24.8 258 2-283 29-304 (310)
55 PRK12382 putative transporter; 99.9 1.5E-19 3.3E-24 165.2 23.9 258 2-295 131-390 (392)
56 PRK11195 lysophospholipid tran 99.9 1.4E-19 3E-24 165.8 23.2 279 1-301 106-390 (393)
57 PRK10077 xylE D-xylose transpo 99.9 1.2E-19 2.6E-24 170.0 23.1 278 2-290 139-453 (479)
58 PRK11652 emrD multidrug resist 99.9 1E-18 2.2E-23 159.8 28.1 249 3-276 116-367 (394)
59 PRK03893 putative sialic acid 99.9 6.9E-20 1.5E-24 172.5 20.5 271 2-281 127-440 (496)
60 TIGR00896 CynX cyanate transpo 99.8 2.5E-19 5.4E-24 161.6 22.9 237 3-270 107-349 (355)
61 PRK11043 putative transporter; 99.8 7.4E-19 1.6E-23 161.2 26.3 246 4-274 115-362 (401)
62 TIGR00895 2A0115 benzoate tran 99.8 2.6E-19 5.7E-24 162.8 22.9 255 2-267 124-398 (398)
63 PRK11646 multidrug resistance 99.8 5.3E-19 1.1E-23 162.3 24.4 269 2-299 118-393 (400)
64 PRK15403 multidrug efflux syst 99.8 1.3E-18 2.9E-23 160.3 26.3 259 4-281 125-384 (413)
65 PRK11128 putative 3-phenylprop 99.8 8.3E-19 1.8E-23 160.0 24.2 261 2-290 113-375 (382)
66 PRK09528 lacY galactoside perm 99.8 1.6E-19 3.4E-24 166.7 17.9 268 8-294 128-403 (420)
67 PRK10473 multidrug efflux syst 99.8 3.6E-18 7.7E-23 156.2 25.7 160 2-176 110-269 (392)
68 TIGR00901 2A0125 AmpG-related 99.8 9.4E-19 2E-23 157.9 21.4 161 2-176 102-275 (356)
69 PRK10133 L-fucose transporter; 99.8 2.4E-18 5.1E-23 159.8 24.3 270 2-296 136-434 (438)
70 COG2807 CynX Cyanate permease 99.8 2.5E-18 5.3E-23 149.9 22.4 256 5-289 121-380 (395)
71 PRK06814 acylglycerophosphoeth 99.8 6.3E-19 1.4E-23 181.5 22.0 269 1-284 126-412 (1140)
72 TIGR00898 2A0119 cation transp 99.8 4E-18 8.6E-23 161.0 24.1 279 2-300 199-502 (505)
73 PRK03633 putative MFS family t 99.8 8.6E-18 1.9E-22 153.2 25.2 257 2-292 113-370 (381)
74 cd06174 MFS The Major Facilita 99.8 1E-17 2.2E-22 149.5 24.7 241 2-290 106-348 (352)
75 PRK10054 putative transporter; 99.8 3.3E-18 7.2E-23 156.8 20.3 268 2-298 115-387 (395)
76 TIGR00882 2A0105 oligosacchari 99.8 3.3E-18 7.1E-23 156.7 19.1 256 15-289 129-390 (396)
77 TIGR00792 gph sugar (Glycoside 99.8 8.8E-18 1.9E-22 155.5 19.9 244 5-272 121-383 (437)
78 PRK08633 2-acyl-glycerophospho 99.8 2.4E-17 5.3E-22 169.8 22.1 266 2-284 122-400 (1146)
79 TIGR00885 fucP L-fucose:H+ sym 99.8 1.5E-16 3.3E-21 146.5 24.5 257 2-285 113-403 (410)
80 PF05977 MFS_3: Transmembrane 99.7 4.4E-15 9.6E-20 139.9 22.9 270 2-293 122-393 (524)
81 TIGR00805 oat sodium-independe 99.7 2.3E-16 5.1E-21 152.3 14.3 175 2-176 191-397 (633)
82 KOG1330 Sugar transporter/spin 99.7 1.6E-16 3.5E-21 142.5 10.0 265 2-273 140-417 (493)
83 TIGR00889 2A0110 nucleoside tr 99.7 1.1E-14 2.4E-19 134.5 21.8 248 16-293 133-401 (418)
84 KOG2504 Monocarboxylate transp 99.7 4.4E-15 9.6E-20 139.3 18.6 281 3-293 155-475 (509)
85 PF11700 ATG22: Vacuole efflux 99.7 1.2E-13 2.7E-18 128.8 27.1 285 5-301 148-475 (477)
86 KOG0569 Permease of the major 99.6 9.3E-14 2E-18 128.2 22.5 290 5-300 138-462 (485)
87 COG0738 FucP Fucose permease [ 99.6 3.2E-13 6.9E-18 119.8 22.9 248 3-277 124-392 (422)
88 TIGR00924 yjdL_sub1_fam amino 99.6 6.2E-13 1.3E-17 124.8 24.9 289 2-293 121-467 (475)
89 KOG0253 Synaptic vesicle trans 99.6 2E-13 4.3E-18 119.4 19.4 284 2-300 184-527 (528)
90 PRK10207 dipeptide/tripeptide 99.5 4.5E-12 9.7E-17 119.3 25.0 287 2-290 124-472 (489)
91 PRK09669 putative symporter Ya 99.5 2.3E-12 5E-17 120.0 22.9 243 5-272 131-391 (444)
92 PF13347 MFS_2: MFS/sugar tran 99.5 1.2E-12 2.7E-17 121.2 20.7 245 5-271 125-386 (428)
93 PRK15462 dipeptide/tripeptide 99.5 7.6E-13 1.7E-17 123.5 17.8 172 110-291 9-186 (493)
94 PRK10054 putative transporter; 99.5 8.6E-13 1.9E-17 121.0 17.7 172 110-292 7-180 (395)
95 PRK09584 tppB putative tripept 99.5 3.4E-12 7.4E-17 120.5 19.4 173 106-288 16-195 (500)
96 TIGR00924 yjdL_sub1_fam amino 99.5 2E-12 4.4E-17 121.4 17.6 175 106-290 5-188 (475)
97 PRK09848 glucuronide transport 99.5 7.7E-12 1.7E-16 116.6 20.7 163 102-272 220-391 (448)
98 KOG3764 Vesicular amine transp 99.4 1.9E-12 4.1E-17 114.5 13.8 256 3-285 179-445 (464)
99 PF00083 Sugar_tr: Sugar (and 99.4 8.4E-17 1.8E-21 149.7 -15.5 289 2-300 121-444 (451)
100 PRK09528 lacY galactoside perm 99.4 6.5E-12 1.4E-16 116.0 15.9 181 105-293 5-190 (420)
101 PRK11462 putative transporter; 99.4 6.7E-11 1.5E-15 110.7 22.7 238 6-272 132-390 (460)
102 PRK10429 melibiose:sodium symp 99.4 2.1E-11 4.6E-16 114.4 18.1 250 4-272 127-396 (473)
103 PF03209 PUCC: PUCC protein; 99.4 2E-10 4.3E-15 102.9 23.1 277 5-297 111-401 (403)
104 PRK11663 regulatory protein Uh 99.4 2.3E-11 5.1E-16 112.9 17.4 163 115-288 28-192 (434)
105 PRK10504 putative transporter; 99.4 7E-11 1.5E-15 110.7 19.4 171 111-292 11-183 (471)
106 KOG4686 Predicted sugar transp 99.4 2.1E-11 4.7E-16 103.4 14.0 265 5-286 158-435 (459)
107 PF07690 MFS_1: Major Facilita 99.3 7E-11 1.5E-15 105.6 17.7 161 117-289 3-167 (352)
108 PRK10207 dipeptide/tripeptide 99.3 6.9E-11 1.5E-15 111.3 18.2 170 110-289 14-189 (489)
109 PRK11646 multidrug resistance 99.3 8.5E-11 1.8E-15 108.0 18.4 170 113-293 13-184 (400)
110 KOG2615 Permease of the major 99.3 1.5E-11 3.3E-16 108.3 12.4 276 4-290 141-436 (451)
111 KOG2563 Permease of the major 99.3 4.4E-11 9.6E-16 107.6 15.5 248 6-271 163-423 (480)
112 KOG0254 Predicted transporter 99.3 7.1E-11 1.5E-15 112.0 17.6 171 4-177 163-360 (513)
113 TIGR00882 2A0105 oligosacchari 99.3 7.4E-11 1.6E-15 108.1 17.2 174 109-290 1-179 (396)
114 TIGR00899 2A0120 sugar efflux 99.3 1E-10 2.2E-15 105.8 16.7 167 117-292 4-174 (375)
115 PRK10489 enterobactin exporter 99.3 8.9E-11 1.9E-15 108.3 15.7 186 102-293 9-196 (417)
116 PF06609 TRI12: Fungal trichot 99.3 9.4E-10 2E-14 104.3 22.5 252 5-268 152-466 (599)
117 PRK05122 major facilitator sup 99.3 1.3E-10 2.7E-15 106.5 16.0 171 110-287 15-192 (399)
118 PRK11043 putative transporter; 99.3 3.6E-10 7.8E-15 103.6 18.9 162 122-293 15-180 (401)
119 PRK09584 tppB putative tripept 99.3 1.5E-09 3.3E-14 102.6 23.2 56 2-57 131-188 (500)
120 PLN00028 nitrate transmembrane 99.3 3.4E-10 7.3E-15 106.4 18.1 176 106-293 29-218 (476)
121 PRK15011 sugar efflux transpor 99.3 4.3E-10 9.2E-15 103.1 18.4 178 106-293 12-193 (393)
122 PRK09874 drug efflux system pr 99.3 6.7E-10 1.5E-14 101.8 19.7 171 111-293 15-192 (408)
123 TIGR00886 2A0108 nitrite extru 99.3 4.1E-10 8.9E-15 101.6 17.6 164 111-285 2-179 (366)
124 PRK12382 putative transporter; 99.3 4.3E-10 9.4E-15 102.8 17.8 168 109-284 14-189 (392)
125 KOG0252 Inorganic phosphate tr 99.2 7.5E-12 1.6E-16 112.6 5.8 290 1-301 162-506 (538)
126 COG2271 UhpC Sugar phosphate p 99.2 7.2E-11 1.6E-15 105.6 11.6 157 131-296 49-208 (448)
127 TIGR00788 fbt folate/biopterin 99.2 1.9E-10 4.2E-15 107.8 14.7 257 3-271 140-415 (468)
128 PRK03699 putative transporter; 99.2 1.5E-09 3.3E-14 99.4 20.4 168 111-289 8-178 (394)
129 COG2270 Permeases of the major 99.2 1E-09 2.2E-14 98.4 18.2 273 5-294 137-429 (438)
130 TIGR02332 HpaX 4-hydroxyphenyl 99.2 9.3E-10 2E-14 101.5 18.8 168 115-293 13-188 (412)
131 PRK11652 emrD multidrug resist 99.2 8.1E-10 1.8E-14 101.1 18.1 162 121-293 19-182 (394)
132 COG2211 MelB Na+/melibiose sym 99.2 1.8E-09 4E-14 99.1 20.0 245 7-272 136-399 (467)
133 TIGR00897 2A0118 polyol permea 99.2 9E-10 2E-14 101.2 17.9 160 111-279 14-178 (402)
134 TIGR00710 efflux_Bcr_CflA drug 99.2 9.1E-10 2E-14 99.9 17.2 159 124-293 19-179 (385)
135 TIGR00900 2A0121 H+ Antiporter 99.2 7.4E-10 1.6E-14 99.4 16.4 166 117-291 6-176 (365)
136 TIGR00903 2A0129 major facilit 99.2 1.1E-09 2.3E-14 99.6 17.4 158 126-294 7-165 (368)
137 TIGR00891 2A0112 putative sial 99.2 1.5E-09 3.3E-14 99.0 18.5 166 113-289 15-184 (405)
138 PRK15403 multidrug efflux syst 99.2 1.1E-09 2.5E-14 101.0 17.6 143 137-289 42-186 (413)
139 TIGR01301 GPH_sucrose GPH fami 99.2 6.6E-09 1.4E-13 96.9 22.4 283 2-297 133-474 (477)
140 PRK03545 putative arabinose tr 99.2 1.3E-09 2.8E-14 99.6 17.5 156 126-292 25-182 (390)
141 PRK10091 MFS transport protein 99.2 1.6E-09 3.5E-14 98.8 17.9 169 110-289 3-173 (382)
142 KOG0255 Synaptic vesicle trans 99.2 2.1E-08 4.5E-13 95.3 24.9 251 3-268 191-467 (521)
143 PF03825 Nuc_H_symport: Nucleo 99.2 1.3E-08 2.8E-13 93.3 22.5 180 104-293 201-394 (400)
144 TIGR00895 2A0115 benzoate tran 99.2 1.9E-09 4.1E-14 97.9 17.0 153 126-289 33-187 (398)
145 PRK10473 multidrug efflux syst 99.2 3.7E-09 8E-14 96.6 18.9 170 110-290 3-174 (392)
146 TIGR00712 glpT glycerol-3-phos 99.2 9.4E-10 2E-14 102.3 15.1 174 111-293 28-205 (438)
147 TIGR00890 2A0111 Oxalate/Forma 99.2 8.2E-10 1.8E-14 99.5 14.2 156 126-292 19-175 (377)
148 PRK14995 methyl viologen resis 99.1 5.9E-09 1.3E-13 98.5 20.3 167 115-292 11-180 (495)
149 PRK10213 nepI ribonucleoside t 99.1 4.9E-09 1.1E-13 96.1 18.9 154 126-290 36-191 (394)
150 TIGR00711 efflux_EmrB drug res 99.1 3.2E-09 7E-14 99.6 18.0 162 117-289 9-172 (485)
151 PF01306 LacY_symp: LacY proto 99.1 9.8E-09 2.1E-13 93.4 20.0 245 24-287 143-393 (412)
152 PRK15402 multidrug efflux syst 99.1 4.3E-09 9.2E-14 96.7 17.7 150 130-290 33-184 (406)
153 TIGR00806 rfc RFC reduced fola 99.1 8.4E-09 1.8E-13 94.8 18.7 169 3-173 134-325 (511)
154 TIGR00881 2A0104 phosphoglycer 99.1 5.1E-10 1.1E-14 100.9 10.9 163 120-293 5-170 (379)
155 PRK03633 putative MFS family t 99.1 1E-08 2.3E-13 93.4 19.4 149 110-269 6-156 (381)
156 PRK11551 putative 3-hydroxyphe 99.1 9.2E-09 2E-13 94.4 18.6 161 118-289 23-185 (406)
157 PRK09705 cynX putative cyanate 99.1 7E-09 1.5E-13 95.1 17.7 153 127-290 26-180 (393)
158 TIGR00902 2A0127 phenyl propri 99.1 3.7E-09 8E-14 96.5 15.7 161 115-285 9-170 (382)
159 TIGR00893 2A0114 d-galactonate 99.1 2.8E-09 6E-14 96.4 14.8 153 129-292 13-167 (399)
160 cd06174 MFS The Major Facilita 99.1 3.8E-09 8.2E-14 94.0 15.4 164 116-290 5-170 (352)
161 PTZ00207 hypothetical protein; 99.1 2.9E-08 6.4E-13 94.6 22.0 288 2-293 139-551 (591)
162 PRK11128 putative 3-phenylprop 99.1 5.7E-09 1.2E-13 95.2 15.7 160 119-288 13-173 (382)
163 PRK12307 putative sialic acid 99.1 1.3E-08 2.8E-13 94.0 18.2 157 114-281 22-180 (426)
164 TIGR00892 2A0113 monocarboxyla 99.1 8.6E-09 1.9E-13 96.4 17.1 153 127-290 36-190 (455)
165 PRK11102 bicyclomycin/multidru 99.1 5.7E-09 1.2E-13 94.7 15.3 154 127-291 8-163 (377)
166 PRK03893 putative sialic acid 99.0 1.8E-08 4E-13 94.9 18.9 161 114-285 24-186 (496)
167 PRK11273 glpT sn-glycerol-3-ph 99.0 9.9E-09 2.2E-13 95.8 16.5 149 129-289 48-203 (452)
168 PF05977 MFS_3: Transmembrane 99.0 1.8E-08 4E-13 95.3 16.7 183 106-295 6-191 (524)
169 PRK11195 lysophospholipid tran 99.0 1.6E-08 3.4E-13 92.8 15.2 168 109-290 2-170 (393)
170 COG2223 NarK Nitrate/nitrite t 99.0 1.4E-08 3E-13 91.0 14.1 174 111-293 15-192 (417)
171 PRK11902 ampG muropeptide tran 99.0 3.7E-08 8.1E-13 90.5 17.5 162 118-290 7-178 (402)
172 PRK15034 nitrate/nitrite trans 99.0 8.2E-08 1.8E-12 89.2 19.4 145 110-265 34-185 (462)
173 TIGR01299 synapt_SV2 synaptic 99.0 6E-08 1.3E-12 95.1 19.4 149 130-289 187-350 (742)
174 PRK15462 dipeptide/tripeptide 99.0 1E-06 2.2E-11 82.8 26.4 56 2-57 119-176 (493)
175 PRK06814 acylglycerophosphoeth 98.9 4.5E-08 9.6E-13 101.5 18.5 179 105-290 6-191 (1140)
176 PRK09556 uhpT sugar phosphate 98.9 1.4E-08 3E-13 95.3 13.4 158 129-292 48-210 (467)
177 COG2814 AraJ Arabinose efflux 98.9 1.2E-07 2.6E-12 85.6 18.3 174 111-295 14-189 (394)
178 PF03137 OATP: Organic Anion T 98.9 1.7E-10 3.7E-15 109.3 0.0 174 2-175 160-371 (539)
179 TIGR00896 CynX cyanate transpo 98.9 4.9E-08 1.1E-12 88.0 15.7 147 129-287 19-168 (355)
180 TIGR00879 SP MFS transporter, 98.9 8.9E-08 1.9E-12 88.9 17.6 136 145-288 70-211 (481)
181 TIGR00885 fucP L-fucose:H+ sym 98.9 2E-07 4.4E-12 86.0 19.0 166 114-290 7-203 (410)
182 PRK11010 ampG muropeptide tran 98.9 1.7E-07 3.7E-12 88.5 18.7 173 106-290 8-191 (491)
183 KOG3626 Organic anion transpor 98.9 4.1E-08 8.9E-13 94.3 14.4 173 2-174 256-457 (735)
184 TIGR00894 2A0114euk Na(+)-depe 98.8 3.5E-08 7.5E-13 92.4 12.4 145 139-293 69-218 (465)
185 TIGR00792 gph sugar (Glycoside 98.8 3.7E-08 8.1E-13 91.2 12.5 168 122-293 11-193 (437)
186 PRK08633 2-acyl-glycerophospho 98.8 1.6E-07 3.4E-12 97.5 18.1 158 105-269 4-165 (1146)
187 COG3104 PTR2 Dipeptide/tripept 98.8 6.2E-08 1.3E-12 88.8 13.1 179 105-293 15-205 (498)
188 PRK10133 L-fucose transporter; 98.8 8.4E-07 1.8E-11 82.6 20.5 142 115-267 31-177 (438)
189 TIGR00880 2_A_01_02 Multidrug 98.8 1.3E-07 2.8E-12 72.5 12.6 132 152-293 4-137 (141)
190 TIGR00901 2A0125 AmpG-related 98.8 3E-07 6.5E-12 82.8 15.9 148 131-289 9-173 (356)
191 TIGR01301 GPH_sucrose GPH fami 98.7 3.8E-07 8.2E-12 85.2 15.8 172 116-296 10-220 (477)
192 PRK10077 xylE D-xylose transpo 98.7 4.3E-07 9.2E-12 85.2 16.4 140 142-289 51-210 (479)
193 PTZ00207 hypothetical protein; 98.7 1.1E-06 2.4E-11 84.0 18.7 156 125-294 42-205 (591)
194 TIGR02718 sider_RhtX_FptX side 98.7 4.4E-07 9.6E-12 82.9 15.3 171 115-293 6-183 (390)
195 TIGR00806 rfc RFC reduced fola 98.7 1.4E-06 3E-11 80.5 17.6 133 131-275 46-181 (511)
196 PF01306 LacY_symp: LacY proto 98.7 1.2E-07 2.6E-12 86.3 10.6 170 107-285 4-179 (412)
197 TIGR00889 2A0110 nucleoside tr 98.7 1.8E-06 3.8E-11 79.9 18.2 60 117-176 9-68 (418)
198 PRK10406 alpha-ketoglutarate t 98.7 3.4E-06 7.3E-11 78.3 19.3 148 130-287 41-212 (432)
199 PRK10642 proline/glycine betai 98.6 4.3E-06 9.4E-11 78.9 19.5 149 130-288 35-207 (490)
200 PRK09952 shikimate transporter 98.6 6.3E-06 1.4E-10 76.7 20.2 147 129-286 41-212 (438)
201 KOG1330 Sugar transporter/spin 98.6 8.8E-08 1.9E-12 86.9 6.4 172 115-297 38-212 (493)
202 PRK15075 citrate-proton sympor 98.6 6.9E-06 1.5E-10 76.3 19.2 156 114-280 19-198 (434)
203 PF06609 TRI12: Fungal trichot 98.6 5.9E-06 1.3E-10 78.8 18.1 176 106-293 36-216 (599)
204 TIGR00898 2A0119 cation transp 98.5 1.2E-06 2.6E-11 82.9 11.9 145 132-290 111-260 (505)
205 PRK09669 putative symporter Ya 98.5 1.2E-06 2.7E-11 81.5 11.4 51 123-173 22-72 (444)
206 TIGR00788 fbt folate/biopterin 98.5 5.8E-06 1.3E-10 77.7 16.0 174 114-293 30-208 (468)
207 TIGR00805 oat sodium-independe 98.5 2.7E-06 5.8E-11 82.8 14.0 157 135-293 57-280 (633)
208 TIGR00887 2A0109 phosphate:H+ 98.5 2.2E-05 4.7E-10 74.5 19.4 138 143-288 53-219 (502)
209 KOG2532 Permease of the major 98.4 3.9E-06 8.5E-11 78.4 12.6 151 139-299 66-221 (466)
210 PRK10429 melibiose:sodium symp 98.4 4.7E-06 1E-10 78.4 12.8 54 120-173 16-69 (473)
211 TIGR00883 2A0106 metabolite-pr 98.3 5.1E-05 1.1E-09 68.6 17.8 57 234-290 122-187 (394)
212 COG2807 CynX Cyanate permease 98.3 2.1E-05 4.6E-10 69.6 14.0 146 137-292 38-184 (395)
213 PF13347 MFS_2: MFS/sugar tran 98.3 2.8E-06 6.1E-11 78.7 8.7 166 121-294 12-198 (428)
214 KOG3764 Vesicular amine transp 98.3 4.2E-06 9.1E-11 74.8 8.7 145 141-295 101-249 (464)
215 PRK11462 putative transporter; 98.2 6.1E-05 1.3E-09 70.6 15.2 163 123-289 22-199 (460)
216 TIGR00880 2_A_01_02 Multidrug 98.2 4.5E-06 9.7E-11 63.8 6.0 61 2-62 70-130 (141)
217 KOG2615 Permease of the major 98.1 1.2E-05 2.6E-10 71.6 9.0 128 129-268 51-181 (451)
218 KOG2816 Predicted transporter 98.1 3.6E-05 7.8E-10 71.8 12.7 252 3-267 132-390 (463)
219 PF03825 Nuc_H_symport: Nucleo 98.1 0.00016 3.4E-09 66.6 16.1 61 115-176 7-67 (400)
220 PF12832 MFS_1_like: MFS_1 lik 98.1 2.4E-05 5.2E-10 54.2 7.6 57 119-176 9-65 (77)
221 PRK09848 glucuronide transport 98.0 0.00012 2.7E-09 68.2 13.9 56 121-176 19-74 (448)
222 KOG2504 Monocarboxylate transp 98.0 6.6E-05 1.4E-09 71.0 12.0 145 135-289 70-216 (509)
223 PF03092 BT1: BT1 family; Int 98.0 3E-05 6.5E-10 72.1 8.6 59 5-63 108-168 (433)
224 KOG0255 Synaptic vesicle trans 98.0 0.00012 2.6E-09 69.6 12.6 139 139-290 111-251 (521)
225 COG0738 FucP Fucose permease [ 97.9 0.0011 2.3E-08 59.9 17.1 128 132-269 34-166 (422)
226 TIGR00926 2A1704 Peptide:H+ sy 97.9 0.00035 7.5E-09 68.1 15.3 160 125-292 2-180 (654)
227 KOG0569 Permease of the major 97.9 0.0008 1.7E-08 62.9 16.8 156 130-292 38-203 (485)
228 PF06813 Nodulin-like: Nodulin 97.9 0.00046 9.9E-09 59.0 13.9 139 124-269 16-157 (250)
229 PF06963 FPN1: Ferroportin1 (F 97.8 0.00078 1.7E-08 62.3 14.9 162 13-176 143-323 (432)
230 COG3104 PTR2 Dipeptide/tripept 97.7 0.0025 5.5E-08 59.0 16.3 58 2-60 136-195 (498)
231 COG2211 MelB Na+/melibiose sym 97.6 0.0014 3.1E-08 60.8 13.6 175 121-300 23-212 (467)
232 KOG0254 Predicted transporter 97.4 0.0054 1.2E-07 58.4 14.6 132 147-289 90-225 (513)
233 PF03092 BT1: BT1 family; Int 97.4 0.0029 6.3E-08 58.9 12.2 150 135-289 14-170 (433)
234 KOG2816 Predicted transporter 97.3 0.0098 2.1E-07 55.7 15.3 126 156-293 72-198 (463)
235 PF01770 Folate_carrier: Reduc 97.2 0.097 2.1E-06 48.0 20.1 169 5-174 115-313 (412)
236 KOG2325 Predicted transporter/ 97.2 0.0042 9.1E-08 57.9 11.3 143 5-156 151-308 (488)
237 PF11700 ATG22: Vacuole efflux 97.2 0.042 9.2E-07 51.8 17.9 56 242-297 187-250 (477)
238 KOG3810 Micronutrient transpor 97.2 0.024 5.3E-07 50.4 14.8 274 5-293 116-420 (433)
239 KOG2533 Permease of the major 97.2 0.003 6.5E-08 59.6 9.9 151 138-297 73-230 (495)
240 TIGR00769 AAA ADP/ATP carrier 97.1 0.046 1E-06 51.3 17.2 164 5-176 151-333 (472)
241 PF07672 MFS_Mycoplasma: Mycop 97.1 0.019 4.1E-07 49.0 13.2 97 15-120 2-104 (267)
242 PF05631 DUF791: Protein of un 96.9 0.12 2.5E-06 46.4 16.7 38 139-176 62-99 (354)
243 KOG2563 Permease of the major 96.6 0.044 9.6E-07 50.4 12.3 129 134-269 68-202 (480)
244 PF05631 DUF791: Protein of un 96.6 0.046 9.9E-07 48.9 12.0 145 12-171 155-303 (354)
245 PF06963 FPN1: Ferroportin1 (F 96.5 0.53 1.1E-05 43.8 19.0 176 110-287 2-193 (432)
246 KOG0252 Inorganic phosphate tr 96.5 0.012 2.6E-07 54.2 7.9 35 143-177 81-115 (538)
247 KOG2325 Predicted transporter/ 96.4 0.033 7.2E-07 52.1 10.7 64 111-174 35-99 (488)
248 PF03209 PUCC: PUCC protein; 96.4 0.097 2.1E-06 47.7 13.0 136 136-274 5-156 (403)
249 KOG0253 Synaptic vesicle trans 96.4 0.085 1.8E-06 47.6 12.2 158 129-299 96-255 (528)
250 PF06779 DUF1228: Protein of u 96.0 0.06 1.3E-06 37.8 7.8 50 123-173 5-54 (85)
251 PF03219 TLC: TLC ATP/ADP tran 96.0 1.4 3.1E-05 41.7 23.5 165 5-176 166-349 (491)
252 PRK03612 spermidine synthase; 96.0 0.98 2.1E-05 43.2 18.5 41 131-172 36-76 (521)
253 KOG3762 Predicted transporter 96.0 0.091 2E-06 49.5 10.9 174 105-289 366-542 (618)
254 PF00083 Sugar_tr: Sugar (and 95.9 0.00026 5.6E-09 65.9 -6.0 130 148-287 48-185 (451)
255 PF02487 CLN3: CLN3 protein; 95.8 0.51 1.1E-05 43.3 14.8 50 9-63 137-188 (402)
256 COG0477 ProP Permeases of the 95.6 1.1 2.3E-05 38.0 15.9 142 129-280 21-171 (338)
257 COG2270 Permeases of the major 95.1 0.3 6.5E-06 44.7 10.8 159 130-295 35-221 (438)
258 COG3202 ATP/ADP translocase [E 95.1 3.1 6.6E-05 39.1 23.2 164 6-174 171-350 (509)
259 TIGR00926 2A1704 Peptide:H+ sy 95.0 4.2 9.1E-05 40.1 20.0 61 2-62 104-174 (654)
260 KOG3762 Predicted transporter 94.7 0.025 5.4E-07 53.1 3.0 53 125-178 26-78 (618)
261 KOG3574 Acetyl-CoA transporter 93.2 3.7 8.1E-05 37.5 13.4 165 103-271 258-433 (510)
262 PF00854 PTR2: POT family; In 92.7 1.2 2.6E-05 40.4 10.3 55 238-292 67-121 (372)
263 TIGR00769 AAA ADP/ATP carrier 92.7 9.2 0.0002 36.1 16.8 39 229-267 150-189 (472)
264 KOG1237 H+/oligopeptide sympor 90.8 10 0.00022 36.7 14.7 172 120-292 47-243 (571)
265 COG0477 ProP Permeases of the 87.6 1.2 2.6E-05 37.6 5.4 60 2-61 113-176 (338)
266 PF00854 PTR2: POT family; In 87.4 0.84 1.8E-05 41.4 4.4 58 2-59 52-112 (372)
267 KOG0637 Sucrose transporter an 87.3 5.3 0.00012 37.3 9.4 47 3-53 162-209 (498)
268 PF02990 EMP70: Endomembrane p 86.9 5.3 0.00011 38.3 9.7 33 143-175 290-322 (521)
269 TIGR01272 gluP glucose/galacto 86.8 5 0.00011 35.4 9.0 57 237-293 40-112 (310)
270 KOG3098 Uncharacterized conser 84.0 38 0.00083 31.9 19.1 34 5-38 124-157 (461)
271 PF06813 Nodulin-like: Nodulin 82.4 2.6 5.7E-05 36.1 4.9 54 4-59 117-170 (250)
272 PF13000 Acatn: Acetyl-coenzym 81.8 49 0.0011 31.5 14.7 33 237-269 435-467 (544)
273 KOG4686 Predicted sugar transp 81.2 2.4 5.2E-05 37.2 4.2 50 5-54 374-426 (459)
274 PF05978 UNC-93: Ion channel r 79.3 29 0.00063 27.4 14.8 52 125-176 11-67 (156)
275 KOG0637 Sucrose transporter an 79.0 1.2 2.6E-05 41.3 1.8 63 115-178 37-103 (498)
276 PF03137 OATP: Organic Anion T 75.3 0.85 1.8E-05 43.8 -0.2 50 126-175 18-67 (539)
277 KOG3574 Acetyl-CoA transporter 73.1 51 0.0011 30.5 10.3 63 111-177 32-99 (510)
278 COG1288 Predicted membrane pro 69.9 33 0.00071 31.9 8.4 31 46-76 216-247 (481)
279 PF01770 Folate_carrier: Reduc 69.3 97 0.0021 28.7 15.0 46 131-176 24-71 (412)
280 COG5336 Uncharacterized protei 59.5 46 0.001 24.4 6.0 20 156-175 52-71 (116)
281 KOG1479 Nucleoside transporter 56.5 1.7E+02 0.0036 27.1 17.4 59 114-174 22-80 (406)
282 KOG3626 Organic anion transpor 56.4 1.7E+02 0.0036 29.5 11.2 50 128-177 114-163 (735)
283 KOG1479 Nucleoside transporter 53.1 62 0.0013 29.9 7.3 42 130-171 263-308 (406)
284 PF07857 DUF1632: CEO family ( 49.8 1.7E+02 0.0037 25.2 9.1 18 124-141 192-209 (254)
285 KOG4332 Predicted sugar transp 46.3 8.6 0.00019 33.6 0.7 42 136-177 62-103 (454)
286 PF09605 Trep_Strep: Hypotheti 44.3 85 0.0018 25.5 6.2 25 153-177 159-183 (186)
287 PF10183 ESSS: ESSS subunit of 41.6 24 0.00052 25.8 2.3 30 43-72 54-83 (105)
288 PRK11588 hypothetical protein; 40.4 2.6E+02 0.0056 26.8 9.4 32 46-77 229-261 (506)
289 COG5336 Uncharacterized protei 40.1 91 0.002 22.9 5.0 31 239-269 38-68 (116)
290 TIGR02185 Trep_Strep conserved 39.7 2.1E+02 0.0045 23.3 8.1 23 155-177 164-186 (189)
291 PRK11875 psbT photosystem II r 38.0 51 0.0011 18.1 2.6 22 51-75 7-28 (31)
292 PF11872 DUF3392: Protein of u 37.6 1.6E+02 0.0036 21.5 6.7 56 111-172 50-105 (106)
293 cd02434 Nodulin-21_like_3 Nodu 35.0 2.1E+02 0.0045 24.1 7.3 19 159-177 180-198 (225)
294 KOG4830 Predicted sugar transp 33.9 71 0.0015 27.9 4.2 46 130-176 37-91 (412)
295 PF15192 TMEM213: TMEM213 fami 33.7 36 0.00079 22.9 2.0 33 40-75 46-78 (82)
296 CHL00031 psbT photosystem II p 32.8 59 0.0013 18.2 2.4 22 51-75 7-28 (33)
297 PF15061 DUF4538: Domain of un 29.7 1.1E+02 0.0024 19.7 3.6 21 46-66 3-23 (58)
298 TIGR00939 2a57 Equilibrative N 29.3 4.8E+02 0.01 24.4 15.5 19 124-143 10-28 (437)
299 TIGR00267 conserved hypothetic 29.0 3E+02 0.0065 21.9 9.2 22 157-178 124-145 (169)
300 PRK10263 DNA translocase FtsK; 28.3 8.1E+02 0.018 26.7 11.9 14 156-169 62-75 (1355)
301 PF13493 DUF4118: Domain of un 27.5 99 0.0021 22.0 3.7 21 155-175 84-104 (105)
302 cd02432 Nodulin-21_like_1 Nodu 25.5 4E+02 0.0087 22.3 8.3 22 157-178 172-193 (218)
303 PF13940 Ldr_toxin: Toxin Ldr, 23.2 1.2E+02 0.0025 17.1 2.4 19 154-172 16-34 (35)
304 KOG4830 Predicted sugar transp 22.7 22 0.00048 30.9 -0.6 61 100-160 191-251 (412)
305 KOG3880 Predicted small molecu 21.4 2.9E+02 0.0063 25.0 5.8 48 20-67 147-196 (409)
306 COG0701 Predicted permeases [G 21.2 4.2E+02 0.0092 23.6 7.0 27 128-154 211-238 (317)
307 PF08114 PMP1_2: ATPase proteo 20.6 86 0.0019 18.5 1.7 22 279-300 19-40 (43)
308 PF01405 PsbT: Photosystem II 20.4 1E+02 0.0023 16.7 1.9 15 51-65 7-21 (29)
309 TIGR00939 2a57 Equilibrative N 20.0 7.2E+02 0.016 23.2 13.8 26 9-38 131-156 (437)
No 1
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-37 Score=285.85 Aligned_cols=298 Identities=38% Similarity=0.759 Sum_probs=258.8
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
+|++..+.++|+|++||++..++..++..+|.+++.++++++.+. +|||++|++.|.+++++.++|.....|+|++++.
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~ 225 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN 225 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 488899999999999999999999999999999999999999998 9999999999999999988888888899999999
Q ss_pred CCHHHHHHHHhccCCCCCC--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198 80 LRPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL 157 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i 157 (301)
.+++|++.+.+.+.+++.. .+.||+++++++.+|..++..++.+++.+.+.+|+|+|+++.+|+|..+.|++.+++.+
T Consensus 226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l 305 (466)
T KOG2532|consen 226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL 305 (466)
T ss_pred CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence 9999998887654433222 36799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC--ChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198 158 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 158 ~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
.+.+..+++|+++||.-+|..+....||.+..+.+.+.++++....... .....+.++.+..+...++.++.+...++
T Consensus 306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~ 385 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQD 385 (466)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhh
Confidence 9999999999999999776666777788888888887776665544432 33345555555555555666666666666
Q ss_pred cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198 236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298 (301)
Q Consensus 236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 298 (301)
..|++.+...|+.|..+.+.+.++|.++|.+... .+|+.+|.+.+++++++.+++..+.++|+
T Consensus 386 ~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~ 451 (466)
T KOG2532|consen 386 IAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEP 451 (466)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcc
Confidence 6899999999999999999999999999999942 57999999999999999999999877765
No 2
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-32 Score=238.52 Aligned_cols=285 Identities=18% Similarity=0.230 Sum_probs=203.7
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH--HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~--~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
|+|.+++++|||++|||+..|+++++.++|..+.+++. +.+..+++||..|+.-|++.+++.++.+...+|+|++..-
T Consensus 136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL 215 (448)
T COG2271 136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL 215 (448)
T ss_pred cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 88999999999999999999999999999999999998 8888999999999999999888766666677899976421
Q ss_pred CCHHHHH--HHHh-ccCCCCC-C--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198 80 LRPAEKK--LIVS-SCASKEP-V--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV 153 (301)
Q Consensus 80 ~~~~~~~--~~~~-~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~ 153 (301)
-+.+|.+ .... +++++++ . ++.-++-+++||..|.+.+.+.+.....|++..|.|.|+.|++|+|..++.....
T Consensus 216 P~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~ 295 (448)
T COG2271 216 PPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAIS 295 (448)
T ss_pred CCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 1111111 0000 1111111 0 1112455789999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhhhcchhh
Q 022198 154 LPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYS 231 (301)
Q Consensus 154 ~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (301)
+..+++..|++++||+|||+.+.+ |..+..+..+...+++..... ..+..+...++.+ .|+..+.--++..
T Consensus 296 lfE~agl~G~Ll~GwlSDklfkgr------R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~-iGf~IyGPqmLiG 368 (448)
T COG2271 296 LFEVAGLPGTLLAGWLSDKLFKGR------RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFI-IGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHhhHHHHHHHHHHHHhcccc------cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HHHHHhhHHHHHH
Confidence 999999999999999999996321 222222333333333322222 2233333333222 2222221112222
Q ss_pred -hhhccCCC-chHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 232 -NHQDIAPR-YSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 232 -~~~~~~p~-~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
...|..|+ ..|++.|+.+.++++ |.+.+....|++.|+.||...|.+..+..+++.+.+..+
T Consensus 369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 23466675 679999999999999 888888999999999999999988777666665544443
No 3
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=100.00 E-value=3.3e-30 Score=240.85 Aligned_cols=298 Identities=31% Similarity=0.563 Sum_probs=216.4
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
.|.+.++++||+|+++|+++.++.+.+..+|.++++++++.+.+.+ |||++|++.+++++++.+++....+|+|+++++
T Consensus 149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~ 228 (465)
T TIGR00894 149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC 228 (465)
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC
Confidence 3677899999999999999999999999999999999999999985 999999998888877766666666677876665
Q ss_pred CCHHHHHHHHhccCC-C-CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198 80 LRPAEKKLIVSSCAS-K-EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL 157 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i 157 (301)
.+++|++...+..++ + +..++.++++++++|.+|...+..++..++.+.+.+|+|+|+++++|+|..++++...++.+
T Consensus 229 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 229 ISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred CCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 555554433221111 1 11123478999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198 158 TMAFSANLGGWIADTLVSKGLSVT-TVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 158 ~~~~g~~~~G~l~Dr~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
++.++.+++|+++||.++|+.... ..++..........+........ ..+....+.++..+.+.........+....+
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 388 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLD 388 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhh
Confidence 999999999999999987644322 22223322222222222211112 2233333333322222212222223334456
Q ss_pred cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198 236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298 (301)
Q Consensus 236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 298 (301)
..|+.+|++.++.|..+++++.++|.+.|++.|. ++|..+|.+.++..+++.+....+.+.++
T Consensus 389 ~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 454 (465)
T TIGR00894 389 LAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGSAER 454 (465)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeeccee
Confidence 7788999999999999999999999999999886 34888999888888888777666554443
No 4
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.96 E-value=5.9e-28 Score=218.99 Aligned_cols=264 Identities=13% Similarity=0.049 Sum_probs=180.5
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
+....++||+|+|||++++++.+++.++|.++++++++++.+.+|||+.|++.++++++..+++....||+|+++++..+
T Consensus 98 ~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~ 177 (368)
T TIGR00903 98 NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFG 177 (368)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Confidence 34566799999999999999999999999999999999999999999999998998877655555567777754322110
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g 162 (301)
.+ + . ..++++++|||.+|...+..++....+|++.+|+|+|+++ +|+|.. .+....+..+.+.++
T Consensus 178 ~~-~----------~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g 242 (368)
T TIGR00903 178 FK-D----------A--VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG 242 (368)
T ss_pred hH-H----------H--HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH
Confidence 00 0 0 0136789999999999999999889999999999999965 688864 565555555544444
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-Cch
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS 241 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~ 241 (301)
.++++||..||+.+....+. .....++.........++...+.++.....+.....+..++..+|..| +.|
T Consensus 243 ---~~~~~d~~~r~~~r~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r 314 (368)
T TIGR00903 243 ---VAVIPDRVARAGLRSIYIRA-----AALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELH 314 (368)
T ss_pred ---HHHhhHHhhhhhhHHHHHHH-----HHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhc
Confidence 58999998765322111111 111111111112222223232222222111111122224455567766 589
Q ss_pred HHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198 242 GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
|++.|+.|..+++++..+|.+.+.+.. +....|.+.++..+++.+...
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998874 677888888888888776654
No 5
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=9.7e-28 Score=214.16 Aligned_cols=262 Identities=23% Similarity=0.278 Sum_probs=191.5
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
.+.++.++..||+||+++++++++|.+++.++|.|++.++.+.+|||+.|+..+.++++..+.....+| |++.++-++
T Consensus 121 i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~ 198 (394)
T COG2814 121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLP 198 (394)
T ss_pred HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCC
Confidence 456788999999999999999999999999999999999999999999999999998776444444444 222111000
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g 162 (301)
. + ..+..+++|+|..+..++..++.+.+.|..++|+-+++++..|+|.+..++.+..+++++.+|
T Consensus 199 ~-------------~--~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~G 263 (394)
T COG2814 199 G-------------P--LRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIG 263 (394)
T ss_pred c-------------c--hhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHH
Confidence 0 0 001235899999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH-h-hHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCC
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSI-G-FLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPR 239 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ 239 (301)
+.++|+++|| +.|+ .+... . .....+.+.. ...++...+..+. +++......+..+. ...+..|+
T Consensus 264 n~~gGrl~dr-~~~~--------~l~~~~~l~a~~~l~l~~--~~~~~~~~~~~~~~wg~a~~~~~~~~~~-~~a~~~p~ 331 (394)
T COG2814 264 NLLGGRLADR-GPRR--------ALIAALLLLALALLALTF--TGASPALALALLFLWGFAFSPALQGLQT-RLARLAPD 331 (394)
T ss_pred HHHHhhhccc-cchh--------HHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhhhhhhHHHH-HhcccCCC
Confidence 9999999999 4431 11111 1 1111111111 2223333322222 22222222222222 22335678
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+..+.++++...|+|-++|..++|.+.|+.|+....++.+...+++.+.....
T Consensus 332 ~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 332 AADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888777776554333
No 6
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.96 E-value=1.1e-27 Score=223.97 Aligned_cols=282 Identities=18% Similarity=0.156 Sum_probs=189.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc---CCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 78 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~---gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~ 78 (301)
|...++++||+|++|||+++|+++.+.++|.++++++..++.+.+ +||..|.+.+++++++.++++...+|+|++++
T Consensus 141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~ 220 (467)
T PRK09556 141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELG 220 (467)
T ss_pred hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcC
Confidence 677899999999999999999999999999999999888777754 69999998888887665555555566665443
Q ss_pred CCCHHHHHHHH-hccCCCCCCCCCC----h-HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh
Q 022198 79 QLRPAEKKLIV-SSCASKEPVKTIP----W-GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC 152 (301)
Q Consensus 79 ~~~~~~~~~~~-~~~~~~~~~~~~~----~-~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~ 152 (301)
..+++|..... .+..++.+.++.+ + ++++|+|.+|...+..++....+++..+|+|.|+++++|+|..++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~ 300 (467)
T PRK09556 221 WGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTF 300 (467)
T ss_pred CCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 32222210000 0000000000111 2 2378999999988888887778888999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhh
Q 022198 153 VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYS 231 (301)
Q Consensus 153 ~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 231 (301)
....+++.++.+++|+++||+++|+.... ...... ............+.... +.+...+....... .....
T Consensus 301 ~~~~~~~~ig~~~~G~lsDr~g~r~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~ 372 (467)
T PRK09556 301 TLFEIGALVGSLLWGWLSDLANGRRALVA------CIALAL-IIFTLGVYQHATSEYMYLASLFALGFLVFGPQ-LLIGV 372 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHH------HHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHH-HHHHH
Confidence 88899999999999999999987642111 000111 11111111122233222 22222221111111 11112
Q ss_pred hhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcc------------cCcchHHHHHHHHHHHHHHHHHH
Q 022198 232 NHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQ------------HGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 232 ~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~------------~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
...|..| +.+|++.|+.|..+++ |++++|.+.|++.| ..+|+.+|.+..++.+++++...
T Consensus 373 ~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 373 AAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 2235545 5899999999999997 66999999999999 56799999888777777755544
No 7
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.96 E-value=3.8e-27 Score=218.47 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=185.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC--CC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED--PQ 79 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~--~~ 79 (301)
|...+++.||+|+|+|++++++++++.++|..+++++.+++.+.+|||+.|++.+++.++..+++....+|+|++. ++
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~ 209 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPS 209 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCC
Confidence 5677899999999999999999999999999999999999999999999999888776554333333456655432 11
Q ss_pred CCHHHHHHHHhccCCCCCCCCCChH-----HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198 80 LRPAEKKLIVSSCASKEPVKTIPWG-----LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL 154 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~ 154 (301)
.++.+++....+++.++ ++.+++ ..+|+|.+|...+..++.....+++.+|+|+|+++++|+|..+++.....
T Consensus 210 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~ 287 (434)
T PRK11663 210 VGEWRHDALELAQQQEG--AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSM 287 (434)
T ss_pred cccccccccccchhccc--cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 11100000000000000 011222 25678888887777666666777888999999988899999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhh
Q 022198 155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNH 233 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 233 (301)
..+++.++.+++|+++||+.+|+.+.. .................. ...+.... ..+...++.... .........
T Consensus 288 ~~~~~~~g~~~~g~l~dr~~~~~r~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 362 (434)
T PRK11663 288 FELGGFIGALVAGWGSDKLFNGNRGPM---NLIFAAGILLSVGSLWLM-PFASYVMQAACFFTIGFFVFG-PQMLIGMAA 362 (434)
T ss_pred HHHHHHHHHHHHhhhHHHhccCCccHH---HHHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 899999999999999999854321110 011111111111111111 11222121 112212211110 111111223
Q ss_pred hccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 234 QDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 234 ~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
.|.. +++++++.|+.|..+++|++++|.+.|++.|+.||+..|...+++.+++++....
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4689999999999999999999999999999988999999888877776654433
No 8
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.95 E-value=6.3e-26 Score=205.52 Aligned_cols=287 Identities=26% Similarity=0.413 Sum_probs=194.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.++.+....+|..+++++++.+.+..|||+.|++.+++.++..+......+|+|+++++.+
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLT 180 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCC
Confidence 56778999999999999999999999999999999999999999999999998777766544444334455444332222
Q ss_pred HHHHHHHHhc------cCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 82 PAEKKLIVSS------CASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 82 ~~~~~~~~~~------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
+++++...++ ..+++..+..+.++++|+|+++...+..++.....+...+|.|.|+++++|+|..+++.+....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (399)
T TIGR00893 181 EEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP 260 (399)
T ss_pred HHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHH
Confidence 2222111110 0011111223467789999999888888887788888999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
.++..++.+++|+++||+++|+........ ..........+..............+.....+..... ..+..+....|
T Consensus 261 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 338 (399)
T TIGR00893 261 GIVGFIGMILGGRLSDLLLRRGKSLVFARK-TAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISD 338 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHh
Confidence 899999999999999999987522111111 1111111111111111111122222222211111111 12233444445
Q ss_pred cC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHHHH
Q 022198 236 IA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 236 ~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~~~ 290 (301)
.. ++.++++.|+.+...++++.++|.+.|++.|+.| +...|.+.+++.+++.+..
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 339 NAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 54 4689999999999999999999999999999966 9988888877777765554
No 9
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.95 E-value=2.8e-26 Score=211.30 Aligned_cols=272 Identities=17% Similarity=0.223 Sum_probs=180.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------hcCCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
|...++++||+|+|+|++++++++.+.++|.++++++++++.+ .+|||++|++.++++++...++....+|+|+
T Consensus 115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 5667889999999999999999999999999999999998864 4799999999888776654444445677776
Q ss_pred CCCCCCHHHHHHHHh----cc---C-CCCC--CC----CCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH-
Q 022198 76 EDPQLRPAEKKLIVS----SC---A-SKEP--VK----TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV- 140 (301)
Q Consensus 76 ~~~~~~~~~~~~~~~----~~---~-~~~~--~~----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~- 140 (301)
+.+.++++|++...+ +. + .++. .. +..+++++ +|.+|...+.+++....++++.+|+|+|+++.
T Consensus 195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 273 (412)
T TIGR02332 195 KAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFN 273 (412)
T ss_pred cCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 544344433321111 00 0 0000 00 11244444 57788888888888888899999999999873
Q ss_pred hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 022198 141 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG 220 (301)
Q Consensus 141 ~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (301)
.|+|..+++.+..+..++..+|.+++|+++||+++|+. ... .........+.......++...+..+.. .+
T Consensus 274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 344 (412)
T TIGR02332 274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-------HTA-LPYLFAAAGWLLASATDHNLIQLLGIIM-AS 344 (412)
T ss_pred CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-------HHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Confidence 47888889998899999999999999999999976521 111 1111111111111112222222111111 11
Q ss_pred hhhhhhcch-hhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHH
Q 022198 221 TDAFSQSGL-YSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLY 283 (301)
Q Consensus 221 ~~~~~~~~~-~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~ 283 (301)
.+....... +....+. ++++++++.|+.|..+++|++++|.+.|.+.|+ ++|+.++.+++++.
T Consensus 345 ~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 345 MGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 111111111 2222333 456899999999999999999999999999998 56999888776554
No 10
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.94 E-value=2.5e-25 Score=206.23 Aligned_cols=276 Identities=14% Similarity=0.111 Sum_probs=175.7
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSK-AHS 72 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~ 72 (301)
|.+.++++|++|+||||++.++.+.+...|..+++.+...+. +.+|||++|++.++++++. ++++. .+|
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~--~~~~~~~~e 220 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA--LWLRRQLDE 220 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH--HHHHhcCCC
Confidence 677899999999999999999999998888888887665543 3689999999866666543 33332 333
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHH-hhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198 73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHF-CHNWGTFILLTWMPTYYNQVLHFNLTESGLF 151 (301)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~ 151 (301)
+|+ .|++. +++ +.++++++|+|+.+...+... +....+|.+.+|+|+|+++++|++..+.+..
T Consensus 221 ~~~-------~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~ 284 (432)
T PRK10406 221 TSQ-------QETRA-------LKE--AGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI 284 (432)
T ss_pred Cch-------HHHhh-------hcc--cccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 221 11100 001 225788999998876654444 3366788899999999999899999899888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH-HHHHhhccCChHHHHHHHHHHHhhhhhhhcchh
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF-FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLY 230 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (301)
..+..++..++.++.|+++||++||+.. ............ ........+++...+.+.........+..+...
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSM------LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISG 358 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHH------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777788888899999999999876311 001111101111 111111222333222222111111111112223
Q ss_pred hhhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCccccC
Q 022198 231 SNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 301 (301)
Q Consensus 231 ~~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 301 (301)
....|..| +.|+++.|+.+..+++ .+...|.+.+.+.+.+++...+.+.++..+++.+.....++++|.+.
T Consensus 359 ~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 431 (432)
T PRK10406 359 ILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMR 431 (432)
T ss_pred HHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 34456655 6899999999988886 35568888885533355666777677777777666666777777653
No 11
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.94 E-value=8.4e-25 Score=203.80 Aligned_cols=285 Identities=16% Similarity=0.211 Sum_probs=176.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHH-HhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVT-GLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~-g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|...+.+.||+|+|+|++++|+++.+.++|..+ ++.++..+....|||+.|++.+++.++..++.....+|+|++.+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP 218 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence 556678899999999999999999999998754 4444434444569999999988777665444444556665432111
Q ss_pred CHHHHHHHHhccCCCCCCCCCCh-----HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPW-----GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-----~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
+++|.+....+..+++..++.+. +.++|+|.+|...+..++.+...++..+|+|.|+++++|++..+++.+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~ 298 (452)
T PRK11273 219 PIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 298 (452)
T ss_pred ChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11111000000000000011122 2367899999888887777777888999999999998999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhh
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQ 234 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (301)
.++..++.+++|+++||+++++.... .+....+..............++...+. ....+...... .........
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 373 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP-VMLIGLHAL 373 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchH----HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH-HHHHHHHHH
Confidence 88999999999999999954321100 0111111111111111111222222211 12122111110 111111223
Q ss_pred ccC-CCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198 235 DIA-PRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 235 ~~~-p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
|.. ++.+|++.|+.+..+++++.+ +|.+.|++.|+.||+.+|.++++..+++++...
T Consensus 374 ~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 374 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 444 468999999999999998776 799999999998899999887776666654433
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.94 E-value=1e-24 Score=199.39 Aligned_cols=263 Identities=15% Similarity=0.160 Sum_probs=185.6
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|||++++|+++.+.++|..+|+++++.+.+.+|||++|++.++++++.........||+|++++
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~--- 192 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS--- 192 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---
Confidence 45678899999999999999999999999999999999999999999999999888776543333333444332110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ ..++++++|+|.++......++.....+...+|+|.|+++++|+|..+++.+.....++..+
T Consensus 193 -~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~ 256 (390)
T PRK03545 193 -GS---------------LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGII 256 (390)
T ss_pred -ch---------------HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 00 01345688999888766666666666777788999999988999999999998888899999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 240 (301)
+.++.|+++||+++|. ............... .....+....+.+ ...+.+..... ........+..|+.
T Consensus 257 g~~~~g~l~dr~~~~~--------~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~ 326 (390)
T PRK03545 257 GSVLFSRLGNRHPSGF--------LLIAIALLLVCLLLL-LPAANSEWHLSVLSIFWGIAIMCIG-LAMQVKVLKLAPDA 326 (390)
T ss_pred HHHHHHHHhhccchhH--------HHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHhcch-HHHHHHHHHhCCCc
Confidence 9999999999987541 111111111111111 1122233222222 22222221111 11223344556788
Q ss_pred hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
++.+.|+.+...++|..+||.+.|++.|+.+++..|.+.+.+.+++++.....
T Consensus 327 ~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 327 TDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999888888876665444
No 13
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.94 E-value=7.4e-25 Score=203.38 Aligned_cols=290 Identities=18% Similarity=0.281 Sum_probs=180.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|.....+.|++|+|+||+++++.+++.++|..+++++.+...+ ..|||+.|++.+++.++..+......+|+|++++ .
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~ 215 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG-L 215 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC-C
Confidence 4556788999999999999999999999999999887776544 5799999999888776644344444566554321 1
Q ss_pred CHHHHHHHH-hccCCCCCCCCCC-----hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198 81 RPAEKKLIV-SSCASKEPVKTIP-----WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL 154 (301)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~ 154 (301)
++.++.... .++..++++.+.+ ++.++|+|.+|...+..++.....+++.+|+|.|+++.+|+|+.+++++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 295 (438)
T TIGR00712 216 PPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFL 295 (438)
T ss_pred CCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHH
Confidence 111100000 0000000000111 2347899999988777777667778899999999999899999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcch-hhhh
Q 022198 155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGL-YSNH 233 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 233 (301)
..++..++.+++|+++||+++++.... .....................++......+ ...+......... ....
T Consensus 296 ~~~~~~ig~~~~g~l~dr~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 370 (438)
T TIGR00712 296 YEYAGIPGTLLCGWMSDKVFKGNRGAT----GVFFMTLVTIAVIVYWMNPAGNPLVDMICM-IVIGFLIYGPVMLIGLHA 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHH----HHHHHHHHHHHHHHHHhcCCCchHHHHHHH-HHHHHHHccHHHHHHHHH
Confidence 888999999999999999965421111 000000111111111111112222221111 1111111111111 1122
Q ss_pred hcc-CCCchHHHHHHHhHHHhhHH-hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198 234 QDI-APRYSGVLLGLSNTAGVLAG-VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGE 297 (301)
Q Consensus 234 ~~~-~p~~~g~a~g~~~~~~~lgg-~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 297 (301)
.+. +++.+|++.|+.+..+++++ .++|.+.|.+.|+.|++.+|.+..+..+++.+.......||
T Consensus 371 ~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 371 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred HHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 234 44689999999999989876 58999999999998899999887776666654444433333
No 14
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.94 E-value=2e-24 Score=202.51 Aligned_cols=279 Identities=14% Similarity=0.086 Sum_probs=178.0
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------hcCCchhHHhhhhhHHHHHHHHhhhccCCC
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 74 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p 74 (301)
+..+++||+|+|+||+++|+.++..++|..+++.+.+.+.. ..|||+.|++.++++++..+.+....+|.|
T Consensus 144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p 223 (476)
T PLN00028 144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP 223 (476)
T ss_pred HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 44578999999999999999988878888777666655432 258999999988887665444443333444
Q ss_pred CCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198 75 AEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL 154 (301)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~ 154 (301)
+++ .++.++ +. ..++......+++.++++++|...+.+++.....+.+.+|+|+|+++++|+|+.+++.+..+
T Consensus 224 ~~~--~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~ 296 (476)
T PLN00028 224 DGN--YRELKK----SG-TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAAS 296 (476)
T ss_pred CCc--hhhHHh----cC-ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHH
Confidence 321 111110 00 00111001135667889998887776665555667788999999998899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhh
Q 022198 155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNH 233 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 233 (301)
..++..++.+++|+++||++||..... |+...........+........++....+..+ ..+.+.. ...+..++..
T Consensus 297 ~~~~~~ig~~~~G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 373 (476)
T PLN00028 297 FGLMNLFARPAGGYLSDVAARRFGMRG--RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ-AACGATFGIV 373 (476)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HhhhhhcccC
Confidence 999999999999999999987632111 22222222222222222222222222222211 1111111 1222344445
Q ss_pred hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 234 ~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+..|+.+|++.|+.+..+++|+.++|.+.+ ..+.++|..+|.+.+++.+++.+.....
T Consensus 374 ~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 374 PFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred cccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 5667888999999998888888888887765 2234579999998888888776665444
No 15
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.4e-24 Score=192.29 Aligned_cols=268 Identities=19% Similarity=0.284 Sum_probs=193.1
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC---CchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g---WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
....++++|||||++|.++|+.. ..|+|..+...++++++...| ||.+-.+..+.-++.++..+....|.|+..++
T Consensus 124 v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~ 202 (417)
T COG2223 124 VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS 202 (417)
T ss_pred cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc
Confidence 45678999999999999999999 779999999999999999999 99999886665555444444455565542111
Q ss_pred CCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198 80 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM 159 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~ 159 (301)
.++. ...+++.++++|..|...+.++....++-++..|+|.|+++++|.|+.+++.+.....+.+
T Consensus 203 ~~~~---------------~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g 267 (417)
T COG2223 203 VKPQ---------------LPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIG 267 (417)
T ss_pred cccc---------------chhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 1110 0024567899999999999988876677789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh-cc---CChHHHHH-HHHHHHhhhhhhhcchhhhhh
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-HV---DSPAMAVL-CMACSQGTDAFSQSGLYSNHQ 234 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (301)
.+..+++|+++||+|.+|.... ....+......+.... .. .+....+. ++.... +........+...+
T Consensus 268 ~l~Rp~GG~LsDR~Gg~rv~~~------~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~-~~G~GnGsvfk~Ip 340 (417)
T COG2223 268 ALARPLGGWLSDRIGGRRVTLA------VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV-FAGLGNGSVFKMIP 340 (417)
T ss_pred HHHHhccchhhhhccchhHHHH------HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH-HhccCcchheeech
Confidence 9999999999999997642211 1111111111111111 01 11222222 222211 11223344566666
Q ss_pred ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 235 DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 235 ~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+.|++.|.+.|+....|.+||..-|...|...|+ ++++..|++...+++++.......
T Consensus 341 ~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 341 VIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999998 558999999999999887654444
No 16
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.93 E-value=1.5e-23 Score=197.37 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=163.2
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 73 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~ 73 (301)
|++.++++||+|+|+||++.++.+.+..+|..+|..+...+. +.+|||++|++.++++++ ..+.....+|+
T Consensus 137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~es 215 (490)
T PRK10642 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEET 215 (490)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCC
Confidence 567889999999999999999999998899888886665443 368999999985554443 22333345665
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcC-hhHHH-HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198 74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWA-LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF 151 (301)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~-~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~ 151 (301)
|+...+.++.++ .+.++..+.++.++++++++ ++.+. .....++....+|++.+|+|+|+++.+|++..++++.
T Consensus 216 p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~ 291 (490)
T PRK10642 216 PAFQQHVDKLEQ----GDREGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLI 291 (490)
T ss_pred hhHHHHHHhhhh----hccccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 542100000000 00000001123467777764 23222 2333344567788899999999998899998888887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchh
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLY 230 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (301)
.....++..++.++.|+++||+|||+... ...+.+...+..........+....... ...++..+.. .+...
T Consensus 292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~g~~~ 364 (490)
T PRK10642 292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVI------LGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCF-TGVMA 364 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHH------HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 77778889999999999999998762110 0011111111111111122222221111 1111111111 11112
Q ss_pred hhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198 231 SNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 231 ~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~ 289 (301)
....+.. ++.|+++.|+.+..+++++.++|.+.|++.+. ++|...+....+..+++.+.
T Consensus 365 ~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~ 425 (490)
T PRK10642 365 STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT 425 (490)
T ss_pred HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 2223444 46899999987777888899999999999886 44555444444444444443
No 17
>PRK09952 shikimate transporter; Provisional
Probab=99.93 E-value=1.7e-23 Score=194.30 Aligned_cols=277 Identities=15% Similarity=0.162 Sum_probs=170.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSK-AHS 72 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~ 72 (301)
|++.++++|++|+|+||+..+..+.+..+|.+++..+..++. +.+|||.+|++.+++.++ ..+++. .+|
T Consensus 144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~--~~~l~~~~~e 221 (438)
T PRK09952 144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI--ALWVRNGMEE 221 (438)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 567789999999999999999999999999999988777665 358999999986655433 233332 233
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCCh-HHhhcChhHHHHH-HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhh
Q 022198 73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPW-GLILSKPPVWALI-VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL 150 (301)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~-~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~ 150 (301)
+|+. .+ +++ +. ++++ ++.++ +.++|+|+.|... ...++.....|...+|+|+|+++++|++..+...
T Consensus 222 s~~~----~~-~~~--~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~ 290 (438)
T PRK09952 222 SAEF----EQ-QQH--EQ--AAAK--KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN 290 (438)
T ss_pred ChhH----HH-HHh--hc--cccc--ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3321 00 000 00 0000 11233 3467787776654 3455666788889999999999999999876655
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHH-HHhhhhhhhcc
Q 022198 151 FCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMAC-SQGTDAFSQSG 228 (301)
Q Consensus 151 ~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 228 (301)
......+...++.++.|+++||++||+.... ..+......+.........+.... +..... +.+.+ ...+.
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 363 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYIT------GALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHD-MVVCV 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHH------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-HHHHH
Confidence 5556677788899999999999987631110 001001111111111111222222 211111 11111 11122
Q ss_pred hhhhhhccCC-CchHHHHHHHhHHHh-hHHhHHHhHhhhhccc--CcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198 229 LYSNHQDIAP-RYSGVLLGLSNTAGV-LAGVFGTAATGYILQH--GSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298 (301)
Q Consensus 229 ~~~~~~~~~p-~~~g~a~g~~~~~~~-lgg~~~~~l~g~l~~~--~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 298 (301)
.++...|..| +.|+++.++.+..++ ++++++|.+.|++.|. ++|...+...+++.+++++....+..++|
T Consensus 364 ~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~ 437 (438)
T PRK09952 364 QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQR 437 (438)
T ss_pred HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3344556555 578888888766655 8999999999999885 35887777777777777666555544443
No 18
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.92 E-value=9.5e-23 Score=187.21 Aligned_cols=269 Identities=15% Similarity=0.110 Sum_probs=175.0
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhH-HHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGS-VTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~-~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
...+.+.+++|+|||++++|+.+++.++|. .+++++++.+.+.+||+..++.......+..++.....+|.++.+ +.+
T Consensus 125 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 203 (402)
T TIGR00897 125 SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ-HMQ 203 (402)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc-ccc
Confidence 445678899999999999999999999996 578999999999999666655432222211112222223321110 000
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++++ .++ ...++++++|+|++|...+..++...+.++..+|+|.|++ ++|+|..+.+.+.....+++.+
T Consensus 204 ~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~i 272 (402)
T TIGR00897 204 TREK---------FSE-LGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIV 272 (402)
T ss_pred CCcc---------hhh-HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHH
Confidence 0000 000 0113567899999998877777777888999999999986 4899999999988888899999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP 238 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p 238 (301)
+.+..|+++||+++|+... .............+..... .++.... +.....+.+.+.. ........+..|
T Consensus 273 g~~~~g~l~dr~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~ 345 (402)
T TIGR00897 273 FNVIFGIVGDKLGWMNTVR-----WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY--VPLAAVFPTLAP 345 (402)
T ss_pred HHHHHHHHHHhhcchhHHH-----HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCc
Confidence 9999999999998653210 0011111111111111111 1222222 2222222222221 112233345678
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+++|.+.|+.|...++++.++|.+.|.+.|..|+...+++.+++++++.+..
T Consensus 346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999889999998888887765543
No 19
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.92 E-value=9.1e-23 Score=184.79 Aligned_cols=264 Identities=16% Similarity=0.113 Sum_probs=174.9
Q ss_pred CchhhhHhhccCcchhHHH--HHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRS--LALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a--~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
|...++..|+.|+++|+++ .+....+.++|.++|+++++.+.+.+|||++|++.+++.++.........||+|+++++
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG 185 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc
Confidence 5667788899888888765 68888888999999999999999999999999998776655433333345554432210
Q ss_pred CCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198 80 LRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTM 159 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~ 159 (301)
++ + +.+.++.+++|+++......++..........++|.|+++++|.++.+.+.+.....+..
T Consensus 186 ---~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 248 (375)
T TIGR00899 186 ---AL----------T----RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLE 248 (375)
T ss_pred ---cc----------C----cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00 0 112345677777776555544443344556788999999999999999998877666677
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP 238 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p 238 (301)
.++.+++|+++||+++|+. +. ...+............++....... ...+.+.+. ..+......+|..|
T Consensus 249 ~~~~~~~g~l~~r~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~ 318 (375)
T TIGR00899 249 IPFMLLAGYLIKRFGKRRL--------ML-LAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI-LAGIGMLYFQDLMP 318 (375)
T ss_pred HHHHHhHHHHHHHhcchhH--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCc
Confidence 7888999999999986631 11 1111111111111111122222111 111222221 11222334456667
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
++++.+.++.+...++|+.++|.+.|.+.|+.|++..|.+.+++.+++.+....
T Consensus 319 ~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 319 GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 777899999999999999999999999999988999999888888777666543
No 20
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.91 E-value=2e-22 Score=189.57 Aligned_cols=271 Identities=14% Similarity=0.186 Sum_probs=178.6
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|+..++..|++|+|||+++.++...+..+|.++++.++.++.+ .+|||.+|++.+++.++.....+ ..+|+++.. +.
T Consensus 126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~-~~ 203 (491)
T PRK11010 126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTI-PV 203 (491)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc-cc
Confidence 4567889999999999999999999999999999999999998 57999999998877655433322 344433211 10
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh-hhhHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC-VLPWLTM 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~-~~~~i~~ 159 (301)
++++ +++ ...++++++++|..|...+..++...+.+....|.|+|+.+++|+|.++.+.+. ....++.
T Consensus 204 ~~~~----------~~~-~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~ 272 (491)
T PRK11010 204 PKTL----------EQA-VVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLAT 272 (491)
T ss_pred ccch----------hhh-HHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0000 000 012467788888877666555555566677788999999888999999999987 4556789
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--HHHHHHHHHhhcc-CChHHHHHHHHHHHhhhhhhhcchhhhhhcc
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF--LGPAFFLTQLSHV-DSPAMAVLCMACSQGTDAFSQSGLYSNHQDI 236 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (301)
.+|.+++|+++||+++|+. ...... ....+........ .+.........+......+.....++...+.
T Consensus 273 iiG~ll~G~L~dr~g~~~~--------l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l 344 (491)
T PRK11010 273 IVGALYGGILMQRLSLFRA--------LMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTL 344 (491)
T ss_pred HHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987521 111111 1111111111111 2222211111110000111112223333334
Q ss_pred C-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 237 A-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 237 ~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
. ++.+++..++.|....+|+.+++.+.|++.|+.||+..|.+.+++.+++.+.....
T Consensus 345 ~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 345 CNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45788899999999999999999999999999889999988888888876665444
No 21
>PRK03699 putative transporter; Provisional
Probab=99.91 E-value=1.5e-22 Score=185.40 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=169.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|...+++.|++|+|+|+++++..+....+|..+++.+.+.+.+ .+|||++|.+.+++.++..++..+ ++.|+.+++
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~- 190 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKH- 190 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCcccccc-
Confidence 5567889999999999999999999989999999988887754 679999999877776554333332 222321110
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
+++ ++++. .+ ...+|.++...+..++...+.+.+.+|+|.|+++++|+|+.+++.+.....++..
T Consensus 191 -~~~--------~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ 255 (394)
T PRK03699 191 -APK--------ADKPV-AK-----EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYM 255 (394)
T ss_pred -Ccc--------ccCcc-cc-----ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHH
Confidence 000 00000 01 1124566666666666666778889999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhhhhccCCC
Q 022198 161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIAPR 239 (301)
Q Consensus 161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (301)
+|.++.|+++||+++|+.. . ......++....+...++... .+.....++..+. ..+...+...+..|+
T Consensus 256 ig~~~~g~l~dr~~~~~~l--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~ 325 (394)
T PRK03699 256 VGMWIFSFIVRFFDLQRIL--------T-VLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSA-IYTTIITLGSQQTKV 325 (394)
T ss_pred HHHHHHHHHHHHhchhhHH--------H-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC
Confidence 9999999999999876321 1 111111111111112223322 2222222222111 112222333344455
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~ 288 (301)
.++...+..+..+++|+.++|.+.|++.|+.|+...++..+++++++..
T Consensus 326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 5666778888899999999999999999998899888887777776643
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.91 E-value=3.4e-22 Score=183.39 Aligned_cols=264 Identities=19% Similarity=0.216 Sum_probs=168.2
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.++.+.+..+|..+++.++..+.+.++||+.|++.+++.++.........||+|+.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 201 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG 201 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC
Confidence 45678899999999999999999999999999999999989899999999998776555443333334455443211100
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcC---hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSK---PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 158 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~ 158 (301)
+++ ++ +...++.+++ +..+..++..++.....+...+|+|.|+++ +|++..+.+.......++
T Consensus 202 ~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~ 267 (406)
T PRK11551 202 AGK---------QR----APVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIG 267 (406)
T ss_pred cch---------hh----hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHH
Confidence 000 00 0011223332 233344444455555677788999999976 699999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-
Q 022198 159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI- 236 (301)
Q Consensus 159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 236 (301)
..++.++.|+++||+++|+. +. ..++.............+......+ ...+.+.. ...+..+....+.
T Consensus 268 ~~~~~~~~g~l~dr~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 337 (406)
T PRK11551 268 GALGSLLIGALMDRLRPRRV--------VL-LIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFY 337 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHH--------HH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHc
Confidence 99999999999999986521 11 1111111111111222233222111 11111111 1112233334444
Q ss_pred CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198 237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~ 289 (301)
++++++++.|+.+..+++++.++|.+.|++.|+ +++...+.....+.+++.+.
T Consensus 338 p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 338 PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999998 45666666555555554433
No 23
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.91 E-value=3.1e-22 Score=183.33 Aligned_cols=263 Identities=16% Similarity=0.149 Sum_probs=172.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|.+.+++.+++| |||+++++.+.++.++|..+|+.+++++.++. |||+.|.+.++..++....++...+++|+++
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 191 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASS--- 191 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---
Confidence 456678899997 78999999999999999999999999998875 8999987766554433222322222222211
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
++ ++. +.++.+|+|+.|...+..++...++++..+|+|+|+++ +|+|..++++...+..+++.
T Consensus 192 -~~-----------~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i 254 (393)
T PRK09705 192 -HK-----------TTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQA 254 (393)
T ss_pred -cC-----------CCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHH
Confidence 00 000 11235678888877776666677888899999999986 79999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-C
Q 022198 161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-R 239 (301)
Q Consensus 161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ 239 (301)
+|.++.|++.||+++|+. ......+.......... ...+......+ ..+.+.+...........++..| +
T Consensus 255 ~g~~~~g~l~~r~~~~~~-------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-l~g~g~g~~~~~~~~~~~~~~~~~~ 325 (393)
T PRK09705 255 AGALLMPAMARHQDRRKL-------LMLALVLQLVGFCGFIW-LPLQLPVLWAM-VCGLGLGGAFPLCLLLALDHSVQPA 325 (393)
T ss_pred HHHHHHHHHHhhccchHH-------HHHHHHHHHHHHHHHHH-ccchHHHHHHH-HHHHhccchHHHHHHHHHhhcCCHH
Confidence 999999999999876521 11111111111111111 11111111111 12222221111111112233333 5
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhhc
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFS 294 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~~ 294 (301)
+++...|+.+..+++++.++|.+.|++.|+ ++++..|.+.+++.+++......+.
T Consensus 326 ~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 326 IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999998 5688888887777776655555553
No 24
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.91 E-value=2.8e-22 Score=183.55 Aligned_cols=262 Identities=15% Similarity=0.075 Sum_probs=166.5
Q ss_pred CchhhhHhhccCcchh--HHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 2 p~~~~~i~~~~p~~~r--g~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
|...+++.++.|+|+| +...++.+.+.++|.++|+++++.+.+.+|||..|+..++++++..+......||+|+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (393)
T PRK15011 124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPL 203 (393)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc
Confidence 5566777888877665 45668999999999999999999999999999999988877766544444445554432211
Q ss_pred CCHHHHHHHHhccCCCCCCCCCChHHhhcC-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198 80 LRPAEKKLIVSSCASKEPVKTIPWGLILSK-PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 158 (301)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~ 158 (301)
. +++ .+ +..++ +..+......++.....+.+..|+|.|+++++|++..+.+.+.....++
T Consensus 204 ~-~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~ 264 (393)
T PRK15011 204 A-TGT----------LE--------APRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGL 264 (393)
T ss_pred c-ccc----------cc--------ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 000 00 00112 1223222233333334455668999999999999999999887776777
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhccC
Q 022198 159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIA 237 (301)
Q Consensus 159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 237 (301)
..++.+++|+++||+++|+. +. ................+++...+..... +...+.. .+......+|..
T Consensus 265 ~i~~~~~~G~l~dr~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~ 334 (393)
T PRK15011 265 EIPTMLIAGYFAKRLGKRFL--------MR-VAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGIL-GGIGMLYFQDLM 334 (393)
T ss_pred HHHHHHHHHHHHHHhChHHH--------HH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 88899999999999987621 11 1111111111111112233322222111 1111111 111123345666
Q ss_pred CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
|+.++.+.++.+...++|+.++|.+.|.+.|+.+|+..|.+.+++.+++++....
T Consensus 335 p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 335 PGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 7789999999889899999999999999999888999988877777776655443
No 25
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.91 E-value=3e-23 Score=187.36 Aligned_cols=267 Identities=16% Similarity=0.204 Sum_probs=172.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHh-hhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGL-AFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~-~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|...++++|++|+|+|+++.++.+.+..+|..+++ .++..+.+..|||+.|++.+.+.++..++.....+|+|++++..
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLP 181 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccC
Confidence 67788999999999999999999999999999999 47777778899999999877776554444444455554322111
Q ss_pred CHHHHHHHH-hc--cCCCC--CCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 81 RPAEKKLIV-SS--CASKE--PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 81 ~~~~~~~~~-~~--~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
++++.+... ++ +.+++ ..++..+++++|+|.+|...+..++.....+.+.+|.|.|+++++|++..+++......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 261 (379)
T TIGR00881 182 PAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLY 261 (379)
T ss_pred ccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 100000000 00 00000 11112356688999999888777777777788899999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhh-hcchhhh
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFS-QSGLYSN 232 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 232 (301)
.++..++.++.|+++||..+|+.. ................... ..+......+. ...+..... .......
T Consensus 262 ~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 334 (379)
T TIGR00881 262 ELGGLVGTLLAGWLSDKLFNGRRG------PLAVFFMALIIVSLLVYWLNPAANPLMDLICL-FALGFLVYGPQMLIGVI 334 (379)
T ss_pred HHHcchhHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH-HHHHHHHhhhhHHHHHH
Confidence 999999999999999997544211 1111111111111111111 11222211111 111111111 1111222
Q ss_pred hhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198 233 HQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV 275 (301)
Q Consensus 233 ~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~ 275 (301)
..+. +++.++++.|+.+...++++.++|.+.|.+.|+.||+..
T Consensus 335 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 3344 457899999999999999999999999999999877654
No 26
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.90 E-value=3.9e-22 Score=179.99 Aligned_cols=261 Identities=19% Similarity=0.148 Sum_probs=171.2
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
.+...+.+|+| |+|+++.++...+..+|..+++++.+.+.+.+|||+.|++.+++.++.........+|+|+++.+ ++
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 188 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIK-TN 188 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccc-cC
Confidence 45567888987 57999999999999999988888888888889999999998887766544433333332221100 00
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g 162 (301)
+ +...++.+.++.+|+|..|...+..++..........+.|.|.+ ++|.+.++.+.+.....++..++
T Consensus 189 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (377)
T TIGR00890 189 I-----------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGG 256 (377)
T ss_pred c-----------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 00001124567889999887776666655555566677777765 57999888999888889999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CC
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-AP 238 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p 238 (301)
.++.|+++||++||+.. . ......++. ............... ....+.+.+.. .+.......|. ++
T Consensus 257 ~~~~g~l~dr~g~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~ 326 (377)
T TIGR00890 257 RPFLGALSDKIGRQKTM-------S--IVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGT-ISLFPSLVSDIFGP 326 (377)
T ss_pred HHHHHHHHHHHhhhhhh-------h--HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccc-hhccHHHHHHHhhh
Confidence 99999999999876321 1 111111111 111111111111111 11111211111 11112233444 45
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
++++++.|+.+...++|+.++|.+.|.+.|+.||+..|.+.+++.+++.
T Consensus 327 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 327 ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999889999988877766654
No 27
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.90 E-value=6.4e-22 Score=180.48 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=166.8
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
....++.|++|+++|+++++....+..+|..+++++++++.+.+|||++|++.+++.++..+......||.++++ + +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~-~--~ 187 (382)
T PRK10091 111 VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA-K--G 187 (382)
T ss_pred HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc-c--c
Confidence 345678999999999999999999999999999999999999999999999988876554333333444432211 0 0
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g 162 (301)
+. +.++ +.+|++..|...+..++.+.+.+...+++|+|+++.+|+|+.+.+++.....++..++
T Consensus 188 ~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig 251 (382)
T PRK10091 188 GL---------------REQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLG 251 (382)
T ss_pred CH---------------HHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0012 3577887777665555555566666788899999889999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccC-CCc
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIA-PRY 240 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~ 240 (301)
.++.|++.||+++|+.. ................ ..++.... +.....+.+......+......++.. ++.
T Consensus 252 ~~~~g~l~~r~~~~~~~-------~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (382)
T PRK10091 252 NLLSGRLSGRYSPLRIA-------AVTDFIIVLALLMLFF-FGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL 323 (382)
T ss_pred hHHHheeccccCchhHH-------HHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH
Confidence 99999999999865321 1111111111111111 11122222 21122222222111111111222222 344
Q ss_pred hHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 241 SGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+.+. .+...++|.++||.+.|++.|+ ++++..+.+.++..++.......+
T Consensus 324 ~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 324 LGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 55443 3677889999999999999996 789998888766655544433333
No 28
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.90 E-value=2.4e-21 Score=177.51 Aligned_cols=255 Identities=17% Similarity=0.196 Sum_probs=165.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.+...++.++|..+|+++++.+.+.+|||++|++.++++++.........||+|++++
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~--- 203 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS--- 203 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc---
Confidence 56678899999999999999999999999999999999999999999999999877665543233233344321110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+ + ..+.++.+|+|.+|...+..++...+.++..+|.++++.+++|+++.+.+.......++..+
T Consensus 204 ~------------~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~ii 267 (394)
T PRK10213 204 H------------Q----KQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFV 267 (394)
T ss_pred c------------c----hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 0 0 11234688999998876666666666777778875555667899999999988888888889
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPR 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (301)
+.++.+++.||..++ ........ ....+.+.. ...++.... .....+.+..... +...+..++..|+
T Consensus 268 g~~~~~~l~~r~~~~--------~l~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~ 336 (394)
T PRK10213 268 GTSLSSFILKRSVKL--------ALAGAPLVLAVSALVLTL--WGSDKIVATGVAIIWGLTFALVP-VGWSTWITRSLAD 336 (394)
T ss_pred HHHHHHHHHhccchh--------HHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHCcc
Confidence 988888888884321 11111111 111111111 112222221 1222222222111 2122223334455
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 286 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~ 286 (301)
+.+...+......++|..+||.+.|++.|+.|+...+...+...++.
T Consensus 337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 55666666667778899999999999999978877777665544443
No 29
>PRK15075 citrate-proton symporter; Provisional
Probab=99.90 E-value=1.1e-21 Score=181.85 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=149.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 73 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~ 73 (301)
|+..++++|++|+|+|++++++.+.+.++|..+|+.+++.+. +.+|||++|++... ...+ .++.+ +.
T Consensus 136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~-~~~~-~~~~~---~~ 210 (434)
T PRK15075 136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL-IVPF-IFLIR---RS 210 (434)
T ss_pred HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH-HHHH-HHHHH---Hh
Confidence 456789999999999999999999998888888888777663 57899999997333 2221 22222 22
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHH-HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh
Q 022198 74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWAL-IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC 152 (301)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~ 152 (301)
+++++ +.+++ + +++..+..+++..++++.+.. .+..++....++...+|.|.|+++.+|++..+++++.
T Consensus 211 ~~e~~---~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~ 280 (434)
T PRK15075 211 LEETE---EFLAR---K----HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVT 280 (434)
T ss_pred cCCCH---HHHHh---h----hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 22111 10000 0 000011124445566655543 3333445566778899999999998999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhh
Q 022198 153 VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYS 231 (301)
Q Consensus 153 ~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (301)
.+..++..++.+++|+++||++||+.... ..........+.........+...... ....+.+.+... +..+.
T Consensus 281 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 354 (434)
T PRK15075 281 LCVGVSNFIWLPIGGALSDRIGRRPVLIA-----FTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN-GAMVV 354 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHH-----HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hhHHH
Confidence 88888999999999999999987631100 000000101001111111122211111 111112222111 11223
Q ss_pred hhhccC-CCchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcc
Q 022198 232 NHQDIA-PRYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSW 272 (301)
Q Consensus 232 ~~~~~~-p~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~ 272 (301)
...|.. ++.|+++.++.+..++. ++.++|.+.|++.|+.|+
T Consensus 355 ~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 355 ALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 334554 46899999987766665 588999999999998554
No 30
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.90 E-value=4.5e-21 Score=174.17 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=164.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.++.+....+|..+++.+++.+.+.+|||++|++.+++.++..+......||+++++++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQ 191 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCC
Confidence 45678899999999999999999999999999999999999999999999998777665543333333444332211100
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+++ ...++++++|+|+++...+...+.....+....+.|.++++++|+++.+.+++.....++..+
T Consensus 192 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 257 (385)
T TIGR00710 192 IST--------------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIF 257 (385)
T ss_pred HHH--------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 000 011345688999888776666555667778889999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC-ChHHHHHHHH--HHHhhhhhhhcchhhhhhccCC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVLCMA--CSQGTDAFSQSGLYSNHQDIAP 238 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p 238 (301)
+.++.|+++||+++|+... .................... .....+.... .+.+.+.. .+.......|..|
T Consensus 258 ~~~~~g~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~ 330 (385)
T TIGR00710 258 GGFLNGRFIKKWGAKSLLR------MGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFP 330 (385)
T ss_pred HHHHHHHHHHhcCHHHHHH------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCc
Confidence 9999999999998763111 11111111111111111111 1111111111 11222211 1222233345567
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 276 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f 276 (301)
+.++++.++.+...+.++.+.+.+.+.+.+..++...+
T Consensus 331 ~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 368 (385)
T TIGR00710 331 HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSL 368 (385)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHH
Confidence 88899999999998887777777777554444444333
No 31
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.90 E-value=1.3e-21 Score=184.61 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=167.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-----------------------hcCCchhHHhhhhh
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-----------------------RFGWPSVFYSFGSL 58 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-----------------------~~gWR~~F~~~g~l 58 (301)
|.+..+++|++|+|+||+++++.+....+|..+++.++..+.+ .++||++|.+.++.
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 6678999999999999999999999999999999988776542 25899999875554
Q ss_pred HHHHHHHHhhhccCCCCCC---CCCCHHHHHHHH---hcc-C---CC-----CCC--CCCChHHhhcCh---hHHH----
Q 022198 59 GTVWFTVWLSKAHSSPAED---PQLRPAEKKLIV---SSC-A---SK-----EPV--KTIPWGLILSKP---PVWA---- 114 (301)
Q Consensus 59 ~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~---~~~-~---~~-----~~~--~~~~~~~ll~~~---~~~~---- 114 (301)
+++ ..++....||+|+.. .+.++++++... +++ . ++ ++. .+.+++++++++ +.++
T Consensus 214 ~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (502)
T TIGR00887 214 ALL-ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLG 292 (502)
T ss_pred HHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHH
Confidence 443 344455679999732 111111111111 000 0 00 000 112577777642 2222
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhh------------HhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGL------------FCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 182 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~------------~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~ 182 (301)
.....++....+|+...|.|++++ +.|++..+++. ...+..++..++.++.++++||+|||+.....
T Consensus 293 ~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~ 371 (502)
T TIGR00887 293 TAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMG 371 (502)
T ss_pred HHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Confidence 122334455567888899999996 56998664332 12233345667889999999999987421110
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcc-CChHHHHHHHHHHHhhhhh-hhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHH
Q 022198 183 VRKIMQSIGFLGPAFFLTQLSHV-DSPAMAVLCMACSQGTDAF-SQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFG 259 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~ 259 (301)
..........+...... ............. .+... ..+..+....|..| +.|+++.|+.+..+++++.++
T Consensus 372 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~ 444 (502)
T TIGR00887 372 ------FFILTVLFFVLGFAYNHLSTHGFLAIYVLAQ-FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIG 444 (502)
T ss_pred ------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHH
Confidence 00111011111111111 1111111111111 11111 11222334457766 579999999999999999999
Q ss_pred HhHhhhhcccC----------cchHHHHHHHHHHHHHHHHHH-hhcCCcccc
Q 022198 260 TAATGYILQHG----------SWDDVFKVSVGLYLVGTAVWN-LFSTGEKVV 300 (301)
Q Consensus 260 ~~l~g~l~~~~----------~~~~~f~~~~~~~~v~~~~~~-~~~~~~~~~ 300 (301)
|.+.+++.|.. ++...|.+.+++.+++.+... +.+|+++.+
T Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~l 496 (502)
T TIGR00887 445 QFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSL 496 (502)
T ss_pred HHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCH
Confidence 99999999852 344566666666666544432 236665543
No 32
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.89 E-value=1.5e-21 Score=184.06 Aligned_cols=255 Identities=15% Similarity=0.101 Sum_probs=168.5
Q ss_pred CchhhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-CC
Q 022198 2 PAMNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQ 79 (301)
Q Consensus 2 p~~~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~-~~ 79 (301)
|.....+.+++ |+|+|+++.|++.....+|..+|+++++++.+++|||++|++..+++++...+.....||+|+++ ++
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~ 192 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP 192 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 44556676776 78999999999999999999999999999999999999999977776654444444455544322 11
Q ss_pred CCHHHHHH-----------H----------------------------HhccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198 80 LRPAEKKL-----------I----------------------------VSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120 (301)
Q Consensus 80 ~~~~~~~~-----------~----------------------------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 120 (301)
.+..+... . ..+...++| ..|+ +++|+|.++...+..+
T Consensus 193 ~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p--~~~~-~lf~~~~~~~~~~~~~ 269 (495)
T PRK14995 193 LNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRP--MIDM-RLFTHRIILSGVVMAM 269 (495)
T ss_pred CChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcCH-HHhCCcccHHHHHHHH
Confidence 22111000 0 000011111 2233 4899999888777777
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-- 198 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-- 198 (301)
+.....++...++|.|+|+.+|+|+.+++++..+..++..++.++.|++.||+++|+. + ..+....++.
T Consensus 270 ~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~--------~-~~g~~~~~~~~~ 340 (495)
T PRK14995 270 TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV--------A-TGGMALSALSFY 340 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--------H-HHHHHHHHHHHH
Confidence 7777788888999999999999999999999999999999999999999999986521 1 1111111111
Q ss_pred -HHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 199 -LTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 199 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
+.......+.... ......+.+.+....+.......+.++++++.+.++.|...++|+.+|+.+.|.+.+
T Consensus 341 ~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 341 GLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222 222222333332221112222334455788999999999999999999999999865
No 33
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.89 E-value=2.5e-21 Score=174.05 Aligned_cols=249 Identities=14% Similarity=0.093 Sum_probs=164.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhh-hccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLS-KAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~-~~~~~p~~~~~~ 80 (301)
|+..+++.|++|++||+++.++.+.+..+|..+|+.+++.+.+.+|||+.|++.++..++....... ..+|+++++ +
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 188 (365)
T TIGR00900 111 PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASE-I- 188 (365)
T ss_pred HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCcc-c-
Confidence 5677899999999999999999999999999999999999999999999999866654433222222 122221111 1
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHH-HhHHHHHHHHhCCCcchhhhHhhhhHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL-TWMPTYYNQVLHFNLTESGLFCVLPWLTM 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~wlp~~l~~~~g~s~~~~~~~~~~~~i~~ 159 (301)
++.+++...+ .+.++++++|+|.++...+..++.....+... .+.|.|.++.+|.+..+.+.+.....++.
T Consensus 189 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (365)
T TIGR00900 189 QALSNAVLRD--------TREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGA 260 (365)
T ss_pred cccchhHHHH--------HHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 1100000000 01235678899998887776666666666665 89999998889999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC-ChHHH-HHHHHHHHhhhhhhhcchhhhhhcc-
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD-SPAMA-VLCMACSQGTDAFSQSGLYSNHQDI- 236 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (301)
.++.++.+++.||.++|. ... ......++......... +.... +.....+++.+.. .+...+...+.
T Consensus 261 ~~~~~~~~~l~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 330 (365)
T TIGR00900 261 LLGALLLGLLGRYFKRMA--------LMT-GAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRV 330 (365)
T ss_pred HHHHHHHHHHHHHhchhH--------HHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 999999999999987552 111 11111111111111111 12221 1122222222211 12233334444
Q ss_pred CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198 237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 270 (301)
Q Consensus 237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~ 270 (301)
++++++.+.|+.+...++++.++|.+.|++.|+.
T Consensus 331 ~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~ 364 (365)
T TIGR00900 331 PAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL 364 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999999998863
No 34
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.89 E-value=1.3e-20 Score=173.19 Aligned_cols=252 Identities=13% Similarity=0.058 Sum_probs=163.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|....++.|++|+++|+++.++......+|..+|+.+++.+.+..|||++|++.+++.++.........||++++.++ +
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 198 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGE-K 198 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccc-c
Confidence 455678899999999999999999888899999999999999999999999987777655433333334443321110 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++.++ ...+++++++||.++...+..++.....+...++.|.|+++++|+++.+.+.......++..+
T Consensus 199 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~ 266 (406)
T PRK15402 199 LSLKE------------LGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIA 266 (406)
T ss_pred ccHHH------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 00000 011356789999988876666555555666778899999999999999998887777788889
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHh--hccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQL--SHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA 237 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (301)
+.++.|+++||+++|+. ..... ............ ....+..... .....+.+.+.. .+..........
T Consensus 267 g~~~~g~l~~r~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~~~ 338 (406)
T PRK15402 267 GNLTLARLTSRRPLRSL-------IRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA-NAGLYRLTLFSS 338 (406)
T ss_pred HHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH-hhhHHHHHhhhc
Confidence 99999999999976521 11111 011111111111 1111222211 111122222211 122222222334
Q ss_pred CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198 238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD 274 (301)
Q Consensus 238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~ 274 (301)
++.+|...+..+....++..+|+.+.+.+.+..++..
T Consensus 339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 5788999999999999999999999999988855443
No 35
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.89 E-value=2.2e-21 Score=178.70 Aligned_cols=268 Identities=14% Similarity=0.100 Sum_probs=163.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-----hh-------------cCCchhHHhhhhhHHHHH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-----HR-------------FGWPSVFYSFGSLGTVWF 63 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-----~~-------------~gWR~~F~~~g~l~~~~~ 63 (301)
|.+.+.+++|||+||||++.|+...+.++|..++..+.+.++ +. .|||.++++..++.++..
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~ 225 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT 225 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999997777777776665554433 32 336777766666554433
Q ss_pred HHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC
Q 022198 64 TVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 143 (301)
Q Consensus 64 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~ 143 (301)
++.....+|.|+++ .+ ..+..+.+|+|..|...+.+++...++.++..|+|.|+++.+
T Consensus 226 i~~~~~~~~~~~~~--~~------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~-- 283 (462)
T PRK15034 226 IAAWSGMNDIASSR--AS------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF-- 283 (462)
T ss_pred HHHHHhCCCccccc--cC------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 33332332222110 00 113456899999999998888876566668889999998765
Q ss_pred CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccC-ChH-H-HHHHHHHHH
Q 022198 144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVD-SPA-M-AVLCMACSQ 219 (301)
Q Consensus 144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~-~~~~~~~~~ 219 (301)
+..+......+..+.+.+..+++|+++||+|+|+.... ..+.....+.. ........ ... . ...++....
T Consensus 284 ~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~------~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~ 357 (462)
T PRK15034 284 PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI------NFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL 357 (462)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 33333333444567788899999999999987632111 11111111111 11111110 111 1 111111111
Q ss_pred hhhhhhhcchhhhhhccCC----------------------CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHH
Q 022198 220 GTDAFSQSGLYSNHQDIAP----------------------RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVF 276 (301)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~p----------------------~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f 276 (301)
..+ ..+...+...+...| ++.|.+.|+.+..|.+||.+-|.+.|...+. +++...|
T Consensus 358 ~~G-~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~ 436 (462)
T PRK15034 358 TAG-LGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAM 436 (462)
T ss_pred Hhc-ccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHH
Confidence 111 112223322222222 2678999999999999999999999999887 7799999
Q ss_pred HHHHHHHHHHH-HHHHhhcCCcc
Q 022198 277 KVSVGLYLVGT-AVWNLFSTGEK 298 (301)
Q Consensus 277 ~~~~~~~~v~~-~~~~~~~~~~~ 298 (301)
+...++|++|. +.+....|++.
T Consensus 437 ~~~~~~~~~~~~~~w~~y~r~~~ 459 (462)
T PRK15034 437 KVFLIFYIVCVLLTWLVYGRRKF 459 (462)
T ss_pred HHHHHHHHHHHHHHHHHhccCCc
Confidence 99999999886 44444455544
No 36
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.89 E-value=1.2e-21 Score=177.77 Aligned_cols=261 Identities=15% Similarity=0.154 Sum_probs=163.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 73 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~ 73 (301)
|+..++++|++|+|+|++..++.+.+..+|..+++.++..+. +.+|||+.|++.+++.++. .......+|+
T Consensus 115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~ 193 (394)
T TIGR00883 115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEET 193 (394)
T ss_pred cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCC
Confidence 566789999999999999999999999999999988776654 4679999999866554432 2222223333
Q ss_pred CCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChh--HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198 74 PAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP--VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF 151 (301)
Q Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~ 151 (301)
|+++ ++++ ++++ .+.++++.+++++ ++......++.....+...+|+|.|+++++|.+..+.+..
T Consensus 194 ~~~~-----~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 260 (394)
T TIGR00883 194 PVFE-----KAQE------KHKK--KRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLV 260 (394)
T ss_pred hhHH-----HHHh------cccc--ccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 2110 1000 0011 1234666777765 6666666666666777888999999998999999999998
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhhccCChHHHHHHH-HHHHhhhhhhhcch
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGL 229 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 229 (301)
.....++..++.++.|+++||+++|+... .......... ..........+........ ..+.+.+.. .+..
T Consensus 261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 333 (394)
T TIGR00883 261 LMLSLILFFITIPLSGALSDRIGRRPVLI------IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMY-TGPM 333 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHH------HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhhH
Confidence 88888999999999999999998763110 0111111111 1111111112222222211 112212111 1223
Q ss_pred hhhhhccCC-CchHHHHHHHh-HHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHH
Q 022198 230 YSNHQDIAP-RYSGVLLGLSN-TAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLY 283 (301)
Q Consensus 230 ~~~~~~~~p-~~~g~a~g~~~-~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~ 283 (301)
.+...|..| +.|+++.++.+ ....+++.++|.+.|++.|+.| |...+....+..
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 344455555 57888877754 4445678899999999999865 776655554433
No 37
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.89 E-value=4e-21 Score=186.54 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=172.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------------CCchhHHhhhhhHHHHHHHHhh
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------------GWPSVFYSFGSLGTVWFTVWLS 68 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------------gWR~~F~~~g~l~~~~~~~~~~ 68 (301)
|.+..+++|++|+++||+.++++.+...+|.++++.++..+.+.+ +||+.|++.+++.++ .++...
T Consensus 274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~ 352 (742)
T TIGR01299 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALT 352 (742)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH-HHHHHH
Confidence 667889999999999999999999999999999998887776543 589998875554443 345555
Q ss_pred hccCCCCCCCCCCH-HHHHH-H---H--------------------hc-cCC---C-CCCCC------------------
Q 022198 69 KAHSSPAEDPQLRP-AEKKL-I---V--------------------SS-CAS---K-EPVKT------------------ 100 (301)
Q Consensus 69 ~~~~~p~~~~~~~~-~~~~~-~---~--------------------~~-~~~---~-~~~~~------------------ 100 (301)
..||+|+......+ +|... . . .. ..+ + +....
T Consensus 353 ~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (742)
T TIGR01299 353 FMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIW 432 (742)
T ss_pred HcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHH
Confidence 67898863111000 00000 0 0 00 000 0 00000
Q ss_pred CChHHhhcChh---HHHHHHHHHhhHHHHHHHHHhHHHHHHHH----h-----------------CCCcc----------
Q 022198 101 IPWGLILSKPP---VWALIVSHFCHNWGTFILLTWMPTYYNQV----L-----------------HFNLT---------- 146 (301)
Q Consensus 101 ~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~l~~~----~-----------------g~s~~---------- 146 (301)
.+++++|+.|. ++.+++..++..+++|++..|+|+++++. + ++++.
T Consensus 433 ~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (742)
T TIGR01299 433 GNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYD 512 (742)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccc
Confidence 02455666654 34456777888899999999999987641 0 00000
Q ss_pred --------------------------------------------------------------------------------
Q 022198 147 -------------------------------------------------------------------------------- 146 (301)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (301)
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 592 (742)
T TIGR01299 513 NDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDE 592 (742)
T ss_pred cchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccch
Confidence
Q ss_pred ---hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhh
Q 022198 147 ---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTD 222 (301)
Q Consensus 147 ---~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 222 (301)
.......+..++..+|.+++|+++||+|||+ . +..++++.+++...+....+....+.+ ...++...
T Consensus 593 ~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~--------~-l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~ 663 (742)
T TIGR01299 593 GAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLR--------M-LAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSI 663 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH--------H-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 0122344556888999999999999999762 1 122232233322222222222222221 11111111
Q ss_pred hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH-hhcCCcccc
Q 022198 223 AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN-LFSTGEKVV 300 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~-~~~~~~~~~ 300 (301)
...+..+....|..| +.|+++.|+.++.+++|++++|.++|.+.+. +....|.+.+++.++++++.. +-+|+++++
T Consensus 664 -~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 664 -AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred -HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 112234445567766 5799999999999999999999999998876 345566666666666544433 346666543
No 38
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.89 E-value=5.6e-21 Score=176.21 Aligned_cols=267 Identities=18% Similarity=0.123 Sum_probs=171.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+..+++.|++|+++|+++.++.+.+.++|..+|+.+++.+.+..|||+.|++.++..++.. +...+.|++++++++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 207 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLLRLPALPPPPQPRE 207 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhCCCCCCCCcccc
Confidence 45567889999999999999999999999999999999999999999999998665544432 22333444332111000
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+..+ + .+..++.++++|.++...+..++.. ...+...|+|.|+++.+|+++.+.+++.....++..+
T Consensus 208 ~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~i 274 (417)
T PRK10489 208 HPLR-----------S-LLAGFRFLLASPVVGGIALLGGLLT-MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAAL 274 (417)
T ss_pred cchH-----------H-HHHHHHHHHcChHHHHHHHHHHHHH-HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHH
Confidence 0000 0 0113456788888776655544432 2456778999999988999999999998888899999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-C
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-R 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~ 239 (301)
+.++.+++.||.+++ +.+. ...+..++........++......+ ...+.+.+ ...+...+..++..| +
T Consensus 275 g~~~~~~l~~~~~~~--------~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~ 344 (417)
T PRK10489 275 GALTSGWLAHSARPG--------LLML-LSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSA-ISSLLQYTLLQTQTPDE 344 (417)
T ss_pred HHHHHHHhhhccCcc--------hHHH-HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCHH
Confidence 999999999974322 1111 1111111122112222233222222 11222221 111222344455555 5
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH-HHHHHHHh
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL-VGTAVWNL 292 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~-v~~~~~~~ 292 (301)
.+|.+.|+.+...++|+.++|.+.|++.|..|....+...+++.+ ++.+....
T Consensus 345 ~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 345 MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999777777766554444 44444333
No 39
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.1e-21 Score=182.14 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=144.3
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHH------hhhcCCchhHHhhhhhHHHHHHHHhhhccCCC
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFL------IHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP 74 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l------~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p 74 (301)
.|+...+++.||.++|||+.+|++++..++|+++|..++..+ ....||||.|++.|++.++..++.+...|++|
T Consensus 152 wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 152 WPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred chHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 388899999999999999999999999999999999999887 34689999999999999887666666788988
Q ss_pred CCCCCCCHHHHHHH----HhccCCC--CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchh
Q 022198 75 AEDPQLRPAEKKLI----VSSCASK--EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTES 148 (301)
Q Consensus 75 ~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~ 148 (301)
.+....+++|+... ++++... ++.+...+++.+++|..|...++.+|.....|++.+|+|.|+++..|+|..++
T Consensus 232 ~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a 311 (495)
T KOG2533|consen 232 SKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQA 311 (495)
T ss_pred hhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHh
Confidence 86655666654321 1111111 11223356789999999999999999999999999999999998678999999
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198 149 GLFCVLPWLTMAFSANLGGWIADTLV 174 (301)
Q Consensus 149 ~~~~~~~~i~~~~g~~~~G~l~Dr~~ 174 (301)
+++..+..++++++.+++|+++||..
T Consensus 312 ~~ls~~~~~~g~v~~i~ag~lsdr~~ 337 (495)
T KOG2533|consen 312 NLLSTPYDVGGIVGLILAGYLSDRLK 337 (495)
T ss_pred ccccchHHhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999963
No 40
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.88 E-value=6.9e-21 Score=175.82 Aligned_cols=256 Identities=15% Similarity=0.188 Sum_probs=156.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhh-ccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~-~~~~p~~~~~~ 80 (301)
|....++.|++|+|+|+++.++...+..+|.++++.+.+.+.+.+|||+.|++. .+..+. .++++. .||+++.
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~-~~~~~~-~~~~~~~~p~~~~~---- 198 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG-LLPVLL-VIYIRARAPESKEW---- 198 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH-HHHHHH-HHHHHHHCCCChHH----
Confidence 456788999999999999999999999999999999999999999999999973 333332 222222 2222110
Q ss_pred CHHHHHHHHhccCCCCC---CCCCChHHhhcChhHHHHHHHH---HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198 81 RPAEKKLIVSSCASKEP---VKTIPWGLILSKPPVWALIVSH---FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVL 154 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~ 154 (301)
++++. .++.++++. ..+.++++++|+|.++...... ++.....+.+..|+|.|+++ +|+++.+.+.....
T Consensus 199 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 274 (426)
T PRK12307 199 --EEAKL-SGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTA 274 (426)
T ss_pred --HHhhh-hccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 00000 000000000 0112467788888876543322 22222344578899999986 59999999988888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccCChHHHHHHHHHHHhhhhhh-hcchhhh
Q 022198 155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVDSPAMAVLCMACSQGTDAFS-QSGLYSN 232 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 232 (301)
..++..++.++.|+++||++||+. .. .+.+...+. ........+....+.....+.+..... .......
T Consensus 275 ~~~~~~~g~~~~g~l~dr~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (426)
T PRK12307 275 AAFGTVLGNIVWGLCADRIGLKKT--------FS-IGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKF 345 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHH--------HH-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 889999999999999999986521 11 111111111 111111111211111111111111000 0111223
Q ss_pred hhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198 233 HQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 276 (301)
Q Consensus 233 ~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f 276 (301)
.+|..| +.+|++.|+.+..+++++.++|.+.|++.|+.|+....
T Consensus 346 ~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~ 390 (426)
T PRK12307 346 LYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAAL 390 (426)
T ss_pred HHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHH
Confidence 345545 67899999999999999999999999999997766543
No 41
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.88 E-value=3e-20 Score=170.58 Aligned_cols=266 Identities=15% Similarity=0.114 Sum_probs=162.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|+..+++.|++|+|||+++.++...+.++|.++++.+++.+.+. +|||.+|++.+++.++.... ....+|+++.+ +.
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~-~~ 190 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPA-RP 190 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccc-cc
Confidence 56778999999999999999999999999999999999999885 59999999988776553322 22334322211 10
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH-HHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW-LTM 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~-i~~ 159 (301)
+++.++ + .+.++++++|||.++...+..++.+........+.+.++.+++|+++++.+++..... ++.
T Consensus 191 ~~~~~~---------~--~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~ 259 (402)
T PRK11902 191 PRSLGE---------A--VVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAAT 259 (402)
T ss_pred cchhHH---------H--HHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence 110000 0 0124678999999887766655555444444566777888889999999999875544 467
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhcc-CChHHHHHHHHH---HHhhhhhh-hcchhhhh
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHV-DSPAMAVLCMAC---SQGTDAFS-QSGLYSNH 233 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~ 233 (301)
.++.+++|++.||+++|+. ..... ......+........ ++.......... ..+..... ........
T Consensus 260 i~g~~~~g~l~~r~g~~~~-------l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 332 (402)
T PRK11902 260 IVGALAGGTLMVRLGLYRS-------LMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALC 332 (402)
T ss_pred HHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999986621 11111 111111111111121 233222222111 11111111 11111222
Q ss_pred hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 234 QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 234 ~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
++..| ++..+..+....+++.+++.+.|.+.|+.||+..|...+.+.+++.+..
T Consensus 333 ~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 333 NRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred CCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 22222 3334444555556666666789999999899999988877777765543
No 42
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.88 E-value=3.2e-21 Score=179.91 Aligned_cols=278 Identities=13% Similarity=0.149 Sum_probs=173.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|....++.+|+| ++|+++.|+.+++.++|..+++++++.+.+.+|||++|++.+++.++..+.+....++.+++++..+
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 205 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKS 205 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 445677889996 7999999999999999999999999999999999999999888765443222222221111000000
Q ss_pred HHHHHHHHhccCC--------CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198 82 PAEKKLIVSSCAS--------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV 153 (301)
Q Consensus 82 ~~~~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~ 153 (301)
+++.+...+...+ ++..+..++ +++++|.++...+..++...+.+...+|+|.|+++ +|++..+++.+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~ 283 (455)
T TIGR00892 206 KSKEGLPPDGSTKKLSKKSTAEKINRFLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLS 283 (455)
T ss_pred cccccCCCCCccccccccchhhhhhhhcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 0000000000000 000001123 47899998887776666667777888999999975 7999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhh
Q 022198 154 LPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSN 232 (301)
Q Consensus 154 ~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (301)
+..++..++.+++|+++||...|+ + ++...........+.........+.... +..+..+.+.+.. .+...+.
T Consensus 284 ~~~~~~~~~~~~~g~l~d~~~~~~-~----~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~-~~~~~~~ 357 (455)
T TIGR00892 284 IIGFVDIFARPSCGLIAGLKWIRP-H----VQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV-GALLFEV 357 (455)
T ss_pred HHHHHHHHHHHHHHHHhcccccCH-H----HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH-HHHHHHH
Confidence 889999999999999999742111 0 1111111111111111111122233222 2222222222211 1222333
Q ss_pred hhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHH
Q 022198 233 HQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 233 ~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~ 288 (301)
..+. ++++++.+.|+.+...++|+.++|.+.|.+.|. ++|+..|.+.+++.+++.+
T Consensus 358 ~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 358 LMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 3344 456789999999999999999999999999998 4698888887766665543
No 43
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.88 E-value=8.3e-21 Score=178.00 Aligned_cols=256 Identities=17% Similarity=0.163 Sum_probs=169.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-CCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED-PQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~-~~~ 80 (301)
|...+++.|++|+|+|+++.+++..+..+|..+|+.+++++.+++|||++|++.++++++.........+|+++++ ++.
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENF 188 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCC
Confidence 5677899999999999999999999999999999999999999999999999977776554333333334332211 111
Q ss_pred CHHHHHH------------HH----------------------------hccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198 81 RPAEKKL------------IV----------------------------SSCASKEPVKTIPWGLILSKPPVWALIVSHF 120 (301)
Q Consensus 81 ~~~~~~~------------~~----------------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 120 (301)
+...... .. .+..++++ ..+. +++|+|.++...+..+
T Consensus 189 d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ 265 (485)
T TIGR00711 189 DFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNP--LVDL-RLFKYRNFTIGCVYMS 265 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCC--ccCH-HHHcCCChHHHHHHHH
Confidence 1100000 00 00001111 1223 4789998888777777
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 200 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (301)
+.....++...++|.|+++.+|+|+.++++...+..++..++.++.|++.||+++|+ .+ ..+....++...
T Consensus 266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~~-~~g~~~~~~~~~ 336 (485)
T TIGR00711 266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK--------LV-TIGLILYAVGFY 336 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--------HH-HHHHHHHHHHHH
Confidence 777788888999999999999999999999999889999999999999999998652 11 112221221111
Q ss_pred Hhh---cc-CChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 201 QLS---HV-DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 201 ~~~---~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
... .. .+..... .....+++.+....+.......+.++++++.+.++.+...++|+.+++.+.|.+.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 337 WRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11 1222221 122223333222212122223344567899999999999999999999999999875
No 44
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.88 E-value=7.8e-20 Score=165.97 Aligned_cols=163 Identities=12% Similarity=0.162 Sum_probs=125.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.++.+.+..+|..+++.+++.+.+.+|||+.|++.+.+.++..+......+|+++++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQP 177 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCC
Confidence 45668899999999999999999999999999999999999999999999998777765543333334444332211000
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
.+. ++ ...++++++++|..+...+..++...+.+....|.|.++.+++|+++.+.+.+.....++..+
T Consensus 178 ~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 245 (377)
T PRK11102 178 FHL----------RT--TIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFV 245 (377)
T ss_pred CCh----------HH--HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 000 00 011355688999888766666666667777888999999998999999999999888899999
Q ss_pred HHHHHHHHHHHHHHc
Q 022198 162 SANLGGWIADTLVSK 176 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r 176 (301)
+.++.|++.||+++|
T Consensus 246 ~~~~~g~l~~r~g~~ 260 (377)
T PRK11102 246 MTIINSRFVRRVGAL 260 (377)
T ss_pred HHHHHHHHHHHhCHH
Confidence 999999999999876
No 45
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.88 E-value=6.9e-21 Score=173.89 Aligned_cols=268 Identities=13% Similarity=0.078 Sum_probs=157.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--CchhHHhhhhhHHHHHHHHhhhccCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ 79 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~ 79 (301)
|...+++.|++|+|+|+++.++.+++..+|..+++.+++.+.+..| ||+.|++.++..++. .+.....||+|+.+++
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~ 197 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEK 197 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHH
Confidence 5567889999999999999999999999999999999999988876 999999754444332 2333344554321111
Q ss_pred CCHHH-HHHHHhccCCCCCCCCCChH----Hhh-cChh----HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198 80 LRPAE-KKLIVSSCASKEPVKTIPWG----LIL-SKPP----VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG 149 (301)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~~----~ll-~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~ 149 (301)
.++++ .+...++...+++..+.+.+ ... +.++ +........+.+...+...+|+|.|+++++|+|..+.+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 277 (405)
T TIGR00891 198 HAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA 277 (405)
T ss_pred hhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH
Confidence 00000 00000000000000000000 000 1111 11122222333444556778999999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcc
Q 022198 150 LFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSG 228 (301)
Q Consensus 150 ~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 228 (301)
.+.....+++.++.++.|+++||+++|+.. ...................+....... ...+..... ..+.
T Consensus 278 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 348 (405)
T TIGR00891 278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAY--------VCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG-IWGI 348 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhh--------HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHcc-chhh
Confidence 998888999999999999999999876321 111111101111111122222111111 111111111 1111
Q ss_pred hhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHH
Q 022198 229 LYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVS 279 (301)
Q Consensus 229 ~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~ 279 (301)
......|.. ++.++++.|+.+..+++++.++|.+.|++.|+.| ++..+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 222334444 5689999999999999999999999999999855 77665543
No 46
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.87 E-value=8.4e-21 Score=176.44 Aligned_cols=284 Identities=15% Similarity=0.091 Sum_probs=166.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH---HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCC-
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS---PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED- 77 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~---~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~- 77 (301)
|....+++|++|+|+|++++++.+.+..+|..+++.++ ....+..|||++|++.++..++. .+.....+|+|+..
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~ 224 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLV 224 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHH
Confidence 45678999999999999999999999999999999998 66667889999999855444333 33334456665311
Q ss_pred -CCCCHHHHHHHHhccCCCC-C-------------------CCCCChHHhhcC------hhHHHHHHHHHhhHHHHHHHH
Q 022198 78 -PQLRPAEKKLIVSSCASKE-P-------------------VKTIPWGLILSK------PPVWALIVSHFCHNWGTFILL 130 (301)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~ll~~------~~~~~~~~~~~~~~~~~~~~~ 130 (301)
++..+++++...+....++ . ..+..++++++. +.++...+..+..........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (481)
T TIGR00879 225 GKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIM 304 (481)
T ss_pred HcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehH
Confidence 0001111110000000000 0 001112333332 122222232333222334456
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH--HhhccC--
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVD-- 206 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 206 (301)
.|.|.+++ ++|++..+++....+..++..++.+++|+++||++||+.... .........+... ......
T Consensus 305 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T TIGR00879 305 YYSPTIFE-NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI------GAAGMAICLFVLGILGASFVTGS 377 (481)
T ss_pred HHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHHHHHHHHHHHHHhhcccCCc
Confidence 67776665 679999888888888889999999999999999987632111 0011111111111 011111
Q ss_pred ----ChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198 207 ----SPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 281 (301)
Q Consensus 207 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~ 281 (301)
.............+.+....+.......|..| +.++.+.++.+...++++.++|.+.|++.++.+|...|.+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~ 457 (481)
T TIGR00879 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG 457 (481)
T ss_pred ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence 11111111111111111111222333355555 5799999999999999999999999999998889888888877
Q ss_pred HHHHHHHHHHhh
Q 022198 282 LYLVGTAVWNLF 293 (301)
Q Consensus 282 ~~~v~~~~~~~~ 293 (301)
+.+++++....+
T Consensus 458 ~~~~~~i~~~~~ 469 (481)
T TIGR00879 458 LNVLGLIFVYFF 469 (481)
T ss_pred HHHHHHHHHhee
Confidence 777776665444
No 47
>PRK10504 putative transporter; Provisional
Probab=99.87 E-value=7.8e-20 Score=171.14 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=165.2
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|....++.|++|+++|+++.++.+.+.++|..+|+++++.+.+.+|||+.|++..++..+.........++++++..+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~ 196 (471)
T PRK10504 117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFD 196 (471)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCC
Confidence 56678899999999999999999999999999999999999999999999998766654443333333333322221221
Q ss_pred HHHHHH---------------------------------------HHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhh
Q 022198 82 PAEKKL---------------------------------------IVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCH 122 (301)
Q Consensus 82 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 122 (301)
...... ..++...++ ...+. +++|||+++......++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~l~~~~~~~~~l~~~~~~ 273 (471)
T PRK10504 197 LSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR--ALFSL-KLFRTRTFSLGLAGSFAG 273 (471)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC--CccCH-HHhcccchHHHHHHHHHH
Confidence 110000 000111111 12344 489999998877777776
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hHHHHHHHHH
Q 022198 123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG-FLGPAFFLTQ 201 (301)
Q Consensus 123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~ 201 (301)
..+......+.|.|++..+|.++.++++...+..++..++.++.|+++||+++|+. ...... ..........
T Consensus 274 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~ 346 (471)
T PRK10504 274 RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV-------LVATTLGLALVSLLFML 346 (471)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHHHHHh
Confidence 66666677889999998889999999998888888888888999999999986521 111111 1111111111
Q ss_pred hhccCChHHH-HHHHHHHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 202 LSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
.....+.... +.+...+.+.+.. .+...... ...+++.++.+.++.+...++|+++++.+.|.+++..++
T Consensus 347 ~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 347 VALLGWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred ccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111222111 1111112222111 11112222 234457889999999999999999999999999887444
No 48
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.87 E-value=7.1e-22 Score=176.91 Aligned_cols=245 Identities=25% Similarity=0.449 Sum_probs=158.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+..+++.|++|+|||+++.++.+.+.++|..+++.+++.+.+.+|||++|++.+++.++..++.....+++|+++++.+
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 183 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES 183 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc
Confidence 56778999999999999999999999999999999999999999999999999888877654432233333333222111
Q ss_pred HHHHHHHHhccCCCCCCCCCC-hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCC-cchhhhHhhhhHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIP-WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFN-LTESGLFCVLPWLTM 159 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s-~~~~~~~~~~~~i~~ 159 (301)
+++++. +++....+ +++++++|.+|......++.....+....|+|.|+++++|++ ..+.+.+.....+.+
T Consensus 184 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (352)
T PF07690_consen 184 PKESES-------KKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVG 256 (352)
T ss_dssp STTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHH
T ss_pred cccccc-------ccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHH
Confidence 111100 00000112 567888887775555555555577779999999989999999 789998888888999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC-
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA- 237 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (301)
.++.++.|+++||+++|+ +............+........++..... .+...+++.+ ...+.......+..
T Consensus 257 ~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 329 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGRRR------RLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFG-IVFPILFSLIQELVP 329 (352)
T ss_dssp HHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHcCcHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 999999999999986431 11111111111111111111111222222 2222222222 12233344445555
Q ss_pred CCchHHHHHHHhHHHhhHHhHHH
Q 022198 238 PRYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 238 p~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
++++|++.|+.+...++++.++|
T Consensus 330 ~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 330 PEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 47899999999999999999987
No 49
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.87 E-value=4.3e-20 Score=169.33 Aligned_cols=269 Identities=16% Similarity=0.180 Sum_probs=165.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|....++.+++|+++|+++.++.+.+..+|..+++++++.+.+.+|||+.|++.+++.++.........+|+++..+ +
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 202 (408)
T PRK09874 125 PNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVS--K 202 (408)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccccc--c
Confidence 45567888999999999999999999999999999999999999999999998777665543333333444322110 1
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHH-HHHHhhHHHHHHHHHhHHHHHHHHhCCCcch----hhhHhhhhH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALI-VSHFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPW 156 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~----~~~~~~~~~ 156 (301)
+++.+ ..+..+.+++|+.+... ...++..........++|.|+++..+ +..+ .+.+.....
T Consensus 203 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~ 268 (408)
T PRK09874 203 KEMLH-------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG-NVSNIAFISGMIASVPG 268 (408)
T ss_pred hhhhH-------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 10000 00112355666655433 22233333444567888999887544 3332 344455566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchhhhhhc
Q 022198 157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
++..++.+..|+++||+++|+.. . .......+.........++.... .....+.+.+.. .+.......+
T Consensus 269 l~~~~~~~~~g~l~dr~g~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 338 (408)
T PRK09874 269 VAALLSAPRLGKLGDRIGPEKIL-------I--TALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGAL-LPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHhccccchhH-------H--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhh-HHHHHHHHHH
Confidence 78888899999999999876321 1 11111111111111222332222 112222222211 1222222233
Q ss_pred -cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCC
Q 022198 236 -IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTG 296 (301)
Q Consensus 236 -~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 296 (301)
.+++++|...++.+...++|..++|.+.|.+.|+.|++..|.+.+++.+++.+......++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999889999999888877776655444333
No 50
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.86 E-value=1.4e-19 Score=165.35 Aligned_cols=261 Identities=14% Similarity=0.169 Sum_probs=170.8
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
...++..|+.++|+++...+....+..+|.++|....+++.+.+|||.+|++.+.+.++..+..+. .+|+++++++
T Consensus 117 ~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~-~~~~~~~~~~--- 192 (390)
T TIGR02718 117 ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW-LKDRAVASPE--- 192 (390)
T ss_pred HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCCCcCccc---
Confidence 455677888999999999999999999999999999999999999999999988877654333322 2222211110
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH-HHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW-LTMAF 161 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~-i~~~~ 161 (301)
+++ + +..++++++|+|..+......++...+.....+|.|.|++| +|+|+++.+.+..... ....+
T Consensus 193 ~~~----------~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~ 259 (390)
T TIGR02718 193 APL----------A--RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLL 259 (390)
T ss_pred cch----------h--hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHH
Confidence 000 0 01245678999988877777677666777788899999976 6999999999877665 46677
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH-HHHHHHHHhhc---cCChHHHHHHHHH-HHhhhhhhhcchhhh-hhc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFL-GPAFFLTQLSH---VDSPAMAVLCMAC-SQGTDAFSQSGLYSN-HQD 235 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 235 (301)
+.+++|++.||+++|+.. ....... ...+....... ..++.....+... .+..+ ......+.. ...
T Consensus 260 g~~~~g~l~~r~g~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 331 (390)
T TIGR02718 260 GCGGGAWLVRRAGLWRTF-------ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG-ITSVAIYTAFMRF 331 (390)
T ss_pred HHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 899999999999876321 1111100 01111111111 1122221111111 11111 111112222 233
Q ss_pred cCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198 236 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 236 ~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~ 288 (301)
..+ +++++..+..+...++|+.++|.+.|++.|+.|++..|...+++.+++.+
T Consensus 332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 332 AGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred hCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 344 78899999999999999999999999999998898888887776666544
No 51
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.86 E-value=1.1e-19 Score=165.68 Aligned_cols=260 Identities=10% Similarity=0.019 Sum_probs=166.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|.+.++..++ +|||+++.|....+.++|.++|+++++.+.+.+|||..|++...+.++. .... ..+|+++++++ +
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~-~~~~~~~~~~~-~ 187 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGF-LIKPTIPPKDA-I 187 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHH-HcCCCCCCCcc-c
Confidence 5566766554 5789999999999999999999999999999999999998865543222 2222 22332211110 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ + +++ +..++++++|+|++|...+..++...+.....+|.|.|+++ +|.|..+.+.......++..+
T Consensus 188 ~~-~--------~~~--~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~ 255 (382)
T TIGR00902 188 PE-D--------ESQ--GDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEII 255 (382)
T ss_pred cc-c--------ccc--cchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence 00 0 001 11246789999999988877777777788889999999975 899999999987776777777
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 240 (301)
+.++.+++.||++.|+ .+ ..+.+...+........+++...+.. ..-+..++.+. +......++.+++.
T Consensus 256 ~~~~~~~l~~r~g~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~~~~~ 325 (382)
T TIGR00902 256 IFAFSNKLFQNCSARD--------LL-LISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCH-LAAMRYIAAQPGSE 325 (382)
T ss_pred HHHHhHHHHhhCCHHH--------HH-HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhh
Confidence 8888888888887542 11 12222222222222223333322221 11122222221 22223334445567
Q ss_pred hHHHHHHHhH-HHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 241 SGVLLGLSNT-AGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 241 ~g~a~g~~~~-~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
++++.++.+. ...+|..++|.+.|++.|+.|. ..|..++++.+++++.
T Consensus 326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 7888888764 4558889999999999999775 6677777766666444
No 52
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.86 E-value=1.6e-19 Score=165.44 Aligned_cols=256 Identities=18% Similarity=0.150 Sum_probs=160.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+..+++.|++|+|+|++++++.+.+.++|.++|+++++.+.+.+|||..|++..++.++.. ...+ +.|+++++ +
T Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-~ 205 (399)
T PRK05122 131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL-LLAR---PRPAVPPV-K 205 (399)
T ss_pred chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHh---cCCCCCCC-C
Confidence 56677889999999999999999999999999999999999999999999987666554322 2222 22221111 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ +.++++.+|+ .+.......+...++....+|+|.|+++ .|+ .+.+.......++..+
T Consensus 206 -~~---------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~ 264 (399)
T PRK05122 206 -GE---------------RLPFRRVLGR--VWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVG 264 (399)
T ss_pred -cc---------------chhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHH
Confidence 00 0123333332 2222222233344566677899999875 466 3455556667788889
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhh-hhccCCC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSN-HQDIAPR 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~p~ 239 (301)
+.++.|++.||+++|+ ... ......++........++....+. ....+.+.+.. .+..... ....+++
T Consensus 265 ~~~~~g~l~~r~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~ 334 (399)
T PRK05122 265 ARLLFGNLINRLGGLR--------VAI-VSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQ 334 (399)
T ss_pred HHHHHHHHHHHhccHH--------HHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHH
Confidence 9999999999987542 111 111111111111112223322221 12222222211 1111122 2334557
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
++|.+.|+.+...++|+.++|.+.|++.|+.|++..|.+.+++.+++.+.....
T Consensus 335 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 335 NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999889999998888777776555444
No 53
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.86 E-value=1.8e-20 Score=169.31 Aligned_cols=243 Identities=16% Similarity=0.134 Sum_probs=148.5
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh----------hcCCchhH-HhhhhhHHHHHHHHhhhcc
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------RFGWPSVF-YSFGSLGTVWFTVWLSKAH 71 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~----------~~gWR~~F-~~~g~l~~~~~~~~~~~~~ 71 (301)
...++++|++|+|+|+++.++.....++|..+++.+++.+.+ ..+||+.| +..+++..+...+.....+
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999999998888888888777766654 34899999 4445544443333333345
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhH
Q 022198 72 SSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLF 151 (301)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~ 151 (301)
|+|+++++.++.+. .++....+.....+..+++++|++|...+..++.....+...+|.|.|+++.+|+|+.+++.+
T Consensus 190 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 266 (366)
T TIGR00886 190 DTPPGKPATGKLSF---KGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAY 266 (366)
T ss_pred cCCcccccchhccc---ccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 55532211000000 000000000001135568899988887777666655677888999999999999999999988
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC--ChHHHHHH-HHHHHhhhhhhhcc
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD--SPAMAVLC-MACSQGTDAFSQSG 228 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 228 (301)
..+..+++.++.+++|+++||+++|+. ..................... +....+.. .......+ ...+.
T Consensus 267 ~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~ 338 (366)
T TIGR00886 267 ASLGGLLGSLARPLGGAISDRLGGARK-------LLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSG-AGNGS 338 (366)
T ss_pred HHHHHHHHHHHhhccchHHHhhccchh-------HHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-cccch
Confidence 888888999999999999999987631 111111111111111111221 22222111 11111111 22233
Q ss_pred hhhhhhccCCCchHHHHHHHhHHHhhHH
Q 022198 229 LYSNHQDIAPRYSGVLLGLSNTAGVLAG 256 (301)
Q Consensus 229 ~~~~~~~~~p~~~g~a~g~~~~~~~lgg 256 (301)
.++...+..|+++|++.|+.+..+++|+
T Consensus 339 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 339 TFALVPHIFRRATGAVSGLVGAIGNLGG 366 (366)
T ss_pred hhhcchhhchhhcccHHHHHHHhccCCC
Confidence 4455556678899999999999888764
No 54
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.86 E-value=2.7e-19 Score=158.61 Aligned_cols=258 Identities=12% Similarity=0.076 Sum_probs=166.7
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh----------------hcCCchhHHhhhhhHHHHHHH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH----------------RFGWPSVFYSFGSLGTVWFTV 65 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~----------------~~gWR~~F~~~g~l~~~~~~~ 65 (301)
++++.++++..|+|++++.+++.+....+|..+||.+++.+.. ...||++|++.+.+..+..++
T Consensus 29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999998773 258999999766665444333
Q ss_pred HhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH--hCC
Q 022198 66 WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHF 143 (301)
Q Consensus 66 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~--~g~ 143 (301)
+.+ . +.|+.+++ ++++. . .++ +.+.++++|+|..+...+..++....--+...|+|+|+.+. +|+
T Consensus 109 ~~~-~-~~p~~~~~--~~~~~---~---~~~---~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~ 175 (310)
T TIGR01272 109 FAF-L-PLPELQEA--DVARV---S---SGD---TTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGL 175 (310)
T ss_pred HHH-c-cCCCCCcc--ccccc---c---ccc---ccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 332 2 22222111 11000 0 000 01123477888888777777766556777899999999854 699
Q ss_pred CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhh
Q 022198 144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA 223 (301)
Q Consensus 144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (301)
+++++++.......++.+|.+++++++||+++|+. +. ......++................+...+++.+
T Consensus 176 s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~--------l~-~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s- 245 (310)
T TIGR01272 176 PEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY--------LA-FNAFLAVLLSIGAALTHGYVAMWFVLALGLFNS- 245 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999986531 11 111111111111111112211122222222222
Q ss_pred hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198 224 FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 283 (301)
Q Consensus 224 ~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~ 283 (301)
...+..++...+..|+..+.+.++. ..+.+|+++.|.+.|.+.|+.|.+..|++...++
T Consensus 246 ~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 246 IMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1223334444444566666677764 6788999999999999999877887777544443
No 55
>PRK12382 putative transporter; Provisional
Probab=99.86 E-value=1.5e-19 Score=165.18 Aligned_cols=258 Identities=14% Similarity=0.114 Sum_probs=159.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+..+++.|++|+|||++++++.+.+.++|..+|+++++.+.+.+|||+.+.+..++.++. ....+..+|+++ + +
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~-~ 205 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLA-WAFNGTVRKVPA---H-A 205 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHhccCCCC---C-c
Confidence 4566788999999999999999999999999999999999999999999888654444332 122222222111 0 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ + .+.++.+| ..|...+..++...+......|.|.|+++ .|++ +.+.......++..+
T Consensus 206 ~~-----------~-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~ 264 (392)
T PRK12382 206 GE-----------R-----PSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVL 264 (392)
T ss_pred cc-----------C-----chHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHH
Confidence 00 0 01122221 12221122223334566677899999875 4665 345555556677888
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhh-hhccCCC
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSN-HQDIAPR 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~p~ 239 (301)
+.++.|++.||+++|+.... ........... ....++......+.. .+.+.+. ..+..... .+..+++
T Consensus 265 ~~~~~g~l~~r~g~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~ 334 (392)
T PRK12382 265 MRVLFGWMPDRFGGVKVAIV-------SLLVETVGLLL--LWLAPTAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQ 334 (392)
T ss_pred HHHHHHHHHHhcCCCeehHH-------HHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHH
Confidence 99999999999987643211 11111111111 112223322222211 1222211 11222222 2334567
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 295 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 295 (301)
++|++.|+.+...++++.++|.+.|++.|+.||+..|.+.+++.+++.+....+.+
T Consensus 335 ~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 335 VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999988999999988888877766554443
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.86 E-value=1.4e-19 Score=165.82 Aligned_cols=279 Identities=11% Similarity=-0.005 Sum_probs=175.0
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
.|+..+++.|++|+|||+++.|+++....+|.++|+.+++.+.+. .|+..|.+.+.+.++. .+.....||+|+++++.
T Consensus 106 ~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~ 183 (393)
T PRK11195 106 SPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQ 183 (393)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCccccccc
Confidence 378889999999999999999999999999999999999999885 4888887755443222 22223445544322111
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
++++.+...+ . ...++.++++|.++.......+...........+|.|+++.+|+|+.+.|++.....+++.
T Consensus 184 ~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i 255 (393)
T PRK11195 184 SWNPIALLRD-F-------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIA 255 (393)
T ss_pred CCCHHHHHHH-H-------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 1111110000 0 0123567888877655444333333445556677888998999999999999998899999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCCC
Q 022198 161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPR 239 (301)
Q Consensus 161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ 239 (301)
+++++.+++.||.++|+. + ..++... .........+++...+.+. ..+.+.+.+. ....+..++..|+
T Consensus 256 ~g~~~~~~l~~~~~~~~~--------~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~ 324 (393)
T PRK11195 256 VGAGAAARLVTLETVLRV--------L-PAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHV 324 (393)
T ss_pred HHHHHHHHHhcCCcccch--------H-HHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcc
Confidence 999999999887654421 1 1111111 1111111222232222222 2223222222 2233334455554
Q ss_pred -c-hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh---cCCccccC
Q 022198 240 -Y-SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF---STGEKVVD 301 (301)
Q Consensus 240 -~-~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~---~~~~~~~~ 301 (301)
. +|.+.++.|...+++..++..+.+.+ +..|.+..+.+....++++......| ++.+|.+|
T Consensus 325 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK11195 325 LVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQFD 390 (393)
T ss_pred cccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3 69999999999999999999988855 66678888888777777776666565 44445444
No 57
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.85 E-value=1.2e-19 Score=170.03 Aligned_cols=278 Identities=15% Similarity=0.109 Sum_probs=155.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh--------hhcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI--------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSS 73 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~--------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~ 73 (301)
|.+.++++|++|+|+||+++++.+.+..+|..+++.++..+. +.+|||++|++.+++.++.. +.....||+
T Consensus 139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s 217 (479)
T PRK10077 139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPET 217 (479)
T ss_pred hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCC
Confidence 667889999999999999999999999999999877765543 46799999998776665543 334456777
Q ss_pred CCCCCCC-CHHHHHHHHhccCCCCC-C-CCCChHHhhcC-----hhHH------HH---HHHHHhhHHHHHHHHHhHHHH
Q 022198 74 PAEDPQL-RPAEKKLIVSSCASKEP-V-KTIPWGLILSK-----PPVW------AL---IVSHFCHNWGTFILLTWMPTY 136 (301)
Q Consensus 74 p~~~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~~-----~~~~------~~---~~~~~~~~~~~~~~~~wlp~~ 136 (301)
|+...+. ++++.+...++..+.+. . ...+.++.+++ +..+ .. ....+....+.+...+|.|.+
T Consensus 218 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 297 (479)
T PRK10077 218 PRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEI 297 (479)
T ss_pred cHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 7531111 11111111110000000 0 00011111110 1110 00 011112222344556777887
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH---HHHHhhccCCh-HHHH
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF---FLTQLSHVDSP-AMAV 212 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~ 212 (301)
++ +.|++..+..+......+...++.+++|+++||++||.. + ..+.+..++ .+......... ....
T Consensus 298 ~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~--------~-i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 298 FK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL--------Q-IIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HH-HcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH--------H-HHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 75 569998878877777788899999999999999986621 1 111111111 11111111111 1221
Q ss_pred HHHHH-HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhh------hcccCcchHHHHHHHHHHH
Q 022198 213 LCMAC-SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGY------ILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~------l~~~~~~~~~f~~~~~~~~ 284 (301)
.++.. +.++.....+..+....|..| +.|+.+.|+.+..+++++.+++.+.+. +.|+.++...|.+.++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 12111 111111111223444556655 689999999999999999988666554 4456667777777666555
Q ss_pred HHHHHH
Q 022198 285 VGTAVW 290 (301)
Q Consensus 285 v~~~~~ 290 (301)
++++..
T Consensus 448 ~~~~~~ 453 (479)
T PRK10077 448 LAALFM 453 (479)
T ss_pred HHHHHH
Confidence 554443
No 58
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.85 E-value=1e-18 Score=159.85 Aligned_cols=249 Identities=12% Similarity=0.076 Sum_probs=161.3
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
....+..|++++++|+++.++.+.+..+|..+++.+++.+.+.+|||++|++.+++.++.........||+++++++ +
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 193 (394)
T PRK11652 116 MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR--R 193 (394)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc--h
Confidence 34567789999999999999999999999999999999999999999999987776655433333344554322110 0
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g 162 (301)
++ .+.++++++|+|.+|...+..++...+...+..+.|.++++.+|+|..+.++......++..++
T Consensus 194 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g 259 (394)
T PRK11652 194 TR--------------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG 259 (394)
T ss_pred hH--------------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0124567889998887655555544455556778889999889999999998877777788888
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCC
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPR 239 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 239 (301)
..+.+++.||.+++ ............+.... .....+....... ...+.+.+ ...+...+...+..|+
T Consensus 260 ~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~ 330 (394)
T PRK11652 260 AWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFPY 330 (394)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccc
Confidence 88888888887632 11111111111111111 1111222222211 11122222 1223334444556678
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHH
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVF 276 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f 276 (301)
++|++.++.+....+|+.+++.+.|.+.++..+....
T Consensus 331 ~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 367 (394)
T PRK11652 331 LAGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGL 367 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 8899999999999999999999999987775444433
No 59
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.85 E-value=6.9e-20 Score=172.48 Aligned_cols=271 Identities=13% Similarity=0.131 Sum_probs=152.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|....++.|++|+|+|+++.++...+.++|..+++.+.+.+.+.+|||+.|++ +.+..+...+.....||+++..++.+
T Consensus 127 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~~~~~~~~ 205 (496)
T PRK03893 127 GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAEDWKEKHA 205 (496)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCchhhhhhcc
Confidence 45667899999999999999999999999999999999999999999999987 44433332222223343322110000
Q ss_pred HH-H-HHHHHhccCCCCCCCCCC--------hHHhhc------------------------------C-hhHHHHHHHHH
Q 022198 82 PA-E-KKLIVSSCASKEPVKTIP--------WGLILS------------------------------K-PPVWALIVSHF 120 (301)
Q Consensus 82 ~~-~-~~~~~~~~~~~~~~~~~~--------~~~ll~------------------------------~-~~~~~~~~~~~ 120 (301)
++ + ++........++...... ....+. + +.........+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (496)
T PRK03893 206 GKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVL 285 (496)
T ss_pred ccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 00 0 000000000000000000 000000 0 00000000111
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH-
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL- 199 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~- 199 (301)
+.....+....|+|.|+++++|++..+++.+.....++..++.+++|+++||+++|+. ......+......
T Consensus 286 ~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~--------~~~~~~~~~~~~~~ 357 (496)
T PRK03893 286 FAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA--------YVCSLLISQLLIIP 357 (496)
T ss_pred HHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH--------HHHHHHHHHHHHHH
Confidence 1111112356899999998999999999999999999999999999999999986521 1111111111111
Q ss_pred HHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHH
Q 022198 200 TQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKV 278 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~ 278 (301)
.......+......+.......+...........++..| +.+|++.++.+..+++|+.++|.+.|++.|+.|+...+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~ 437 (496)
T PRK03893 358 VFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALAS 437 (496)
T ss_pred HhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHH
Confidence 111111111111111111001111111112223345544 6799999999999999999999999999999888877655
Q ss_pred HHH
Q 022198 279 SVG 281 (301)
Q Consensus 279 ~~~ 281 (301)
.+.
T Consensus 438 ~~~ 440 (496)
T PRK03893 438 LSF 440 (496)
T ss_pred HHH
Confidence 443
No 60
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.85 E-value=2.5e-19 Score=161.63 Aligned_cols=237 Identities=12% Similarity=0.104 Sum_probs=151.9
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc--CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~--gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
....++.|++| ++|+++.++++.+.++|..+++.+++.+.+.. +||+.|...+.+.++....++ ++.++++++
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~- 181 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAA- 181 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCC-
Confidence 44567788886 68999999999999999999999998888765 399999876655443222222 222111100
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
+ ++. .+.+.++++|+|..|...+..++....++...+|+|.|+++ +|+|..+.+.+.....++..
T Consensus 182 ---~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i 246 (355)
T TIGR00896 182 ---N----------QTT-TRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQA 246 (355)
T ss_pred ---C----------CCC-CCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 0 000 01134568899998877666666666788889999999975 69999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH--HHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhh-hccC
Q 022198 161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF--FLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNH-QDIA 237 (301)
Q Consensus 161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 237 (301)
++.++.|+++||+++|+ +... ......++ ....+... +... ......+.+.+.. .+...+.. .+..
T Consensus 247 ~~~~~~g~l~dr~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~l~g~~~g~~-~~~~~~~~~~~~~ 315 (355)
T TIGR00896 247 ASALLIPALARRVKDQR-------GIVA-VLAVLQLVGLCGLLFAPM-HGLW-AWALVLGLGQGGA-FPLALTLIGLRSR 315 (355)
T ss_pred HHHHhHHHHHhhhccch-------HHHH-HHHHHHHHHHHHHHHhhh-hHHH-HHHHHHHHhhhhH-hHHHHHHHHHhcc
Confidence 99999999999995442 1111 11111111 11111111 1111 1112222222211 11112221 2222
Q ss_pred -CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198 238 -PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 270 (301)
Q Consensus 238 -p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~ 270 (301)
+++++...++.+..+++++.++|.+.|++.|+.
T Consensus 316 ~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~ 349 (355)
T TIGR00896 316 QAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS 349 (355)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788889999999999999999999999983
No 61
>PRK11043 putative transporter; Provisional
Probab=99.85 E-value=7.4e-19 Score=161.17 Aligned_cols=246 Identities=13% Similarity=0.143 Sum_probs=159.3
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 83 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~ 83 (301)
..+++.|++|+++++++.+..+....+|..+++.+++.+.+.+|||++|++.+.+.++..+... ..+|+++++ +++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~ 190 (401)
T PRK11043 115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPSKKAR---KQS 190 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCCCCcc---ccc
Confidence 4567899999999999999999999999999999999999999999999987777665433332 233332211 000
Q ss_pred HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198 84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA 163 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~ 163 (301)
+ ++.++++++|+|+.+...+...+....++...+|.|.|+++ +|+|+.+.++......++..+|.
T Consensus 191 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~ 255 (401)
T PRK11043 191 Q--------------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG 255 (401)
T ss_pred h--------------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 01245678899988766555555555667788999998864 79999999987777778888999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH-HHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCch
Q 022198 164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLG-PAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRYS 241 (301)
Q Consensus 164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 241 (301)
++++++.||+++|+.. +.......+. ..+.........+....+. ....+.+.+.. .+.......+..|+++
T Consensus 256 ~~~~~l~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 329 (401)
T PRK11043 256 YGCRAALQKWGGEQLL-----PWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI-YPIVVAQALRPFPQAT 329 (401)
T ss_pred HHHHHHHHHcCHHHHH-----HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhCcccC
Confidence 9999999998765211 1111111111 1111111111222222211 11112222211 1222222234457789
Q ss_pred HHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198 242 GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD 274 (301)
Q Consensus 242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~ 274 (301)
|.+.|+.+..++.++..++.+.|.+.|......
T Consensus 330 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 330 GKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 999999999999999999999999988643433
No 62
>TIGR00895 2A0115 benzoate transport.
Probab=99.85 E-value=2.6e-19 Score=162.80 Aligned_cols=255 Identities=23% Similarity=0.327 Sum_probs=157.2
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+.+|||..|++.+.+..+...+.....+|+|+...+.+
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR 203 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC
Confidence 56778999999999999999999999999999999999999999999999998766655443343444555443211111
Q ss_pred HHHHHH----HHhc----c---CCCCCC----CCCChHHhhcCh---hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC
Q 022198 82 PAEKKL----IVSS----C---ASKEPV----KTIPWGLILSKP---PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF 143 (301)
Q Consensus 82 ~~~~~~----~~~~----~---~~~~~~----~~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~ 143 (301)
+++.+. ...+ . .++++. .+..++.+++++ ..+..++..++.....+...+|+| ++.+++|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~ 282 (398)
T TIGR00895 204 PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGF 282 (398)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 111100 0000 0 000000 011122233333 233344445555667777889999 66667899
Q ss_pred CcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhh
Q 022198 144 NLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTD 222 (301)
Q Consensus 144 s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 222 (301)
+..+.+.......++..++.++.|+++||+++| .. .. .................+..... .....+.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 353 (398)
T TIGR00895 283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPR--VT------AL-LLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN 353 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH--HH------HH-HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999999999888999999999999999999765 11 11 11111111111111122232222 2222222222
Q ss_pred hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 223 AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
...+...+...+..| +.++.+.|+.+..+++++.++|.+.|+++
T Consensus 354 -~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 354 -GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 112233444455544 68999999999999999999999999863
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.85 E-value=5.3e-19 Score=162.34 Aligned_cols=269 Identities=11% Similarity=0.087 Sum_probs=160.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+..+++.|++|+|+|+++.|+.+...++|..+|+++++++. .+|||++|++.+.+.++..+......+| +++++ +
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~-~~~~~--~ 193 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA-YKLST--V 193 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc-ccccc--c
Confidence 556788999999999999999999999999999999999998 7899999998776655433332233332 11110 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ + .+.++++++|+|+++...+..+...........++|.|+++..+ ++.+.+++.....++...
T Consensus 194 ~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~ 258 (400)
T PRK11646 194 RT-------------P-VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLT 258 (400)
T ss_pred ch-------------h-hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHH
Confidence 00 0 01145678899888765544443333334456789999987644 778888877666665555
Q ss_pred HHHHHHHHHHH-HHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CC
Q 022198 162 SANLGGWIADT-LVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-AP 238 (301)
Q Consensus 162 g~~~~G~l~Dr-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p 238 (301)
+....+++.|| ++.+ +... ..+...++........++....+.. ...+.+.+ ...+.......+. ++
T Consensus 259 ~~~~~~~~~~~r~~~~-------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~ 328 (400)
T PRK11646 259 LLYPIARWSEKRFRLE-------HRLM--AGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSI-IAEPARETLSASLADA 328 (400)
T ss_pred HHHHHHHHHHHhcchh-------HHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCc
Confidence 55444555554 3222 1111 1111111111111222222222211 11112221 1112223333444 45
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhcccC---c-chHHHHHHHHHHHHHHHHHHhhcCCccc
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG---S-WDDVFKVSVGLYLVGTAVWNLFSTGEKV 299 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~---~-~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 299 (301)
+++|.+.|+.+....+|+.++|.+.|++.|+. + ....+...+...+++++......+++|+
T Consensus 329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (400)
T PRK11646 329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQKRI 393 (400)
T ss_pred ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 78999999999999999999999999999983 2 2345555555555555555444555543
No 64
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.84 E-value=1.3e-18 Score=160.33 Aligned_cols=259 Identities=9% Similarity=-0.004 Sum_probs=159.8
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 83 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~ 83 (301)
...++.|++|+++|++++++++.+..+|..+|+.+++.+.+.+|||++|++.++++++..+......||+++++++ +.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~-~~~ 203 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV-PFS 203 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC-CCC
Confidence 4567889999999999999999999999999999999999999999999998887766543333344554321100 000
Q ss_pred HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198 84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA 163 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~ 163 (301)
.+. ...++++++|||.+|...+..++.....+.+..+.|.++++.+|+|+.+.++.......+..+++
T Consensus 204 ~~~------------~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~ 271 (413)
T PRK15403 204 AKS------------VLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN 271 (413)
T ss_pred hHH------------HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 000 01145678999999988777776667778888899999999999999999998877777777777
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCCCchH
Q 022198 164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPRYSG 242 (301)
Q Consensus 164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~g 242 (301)
.+.+++.+|..+++. ... ...+..++..... .......++.......+ ..+.+.+. ..+...+......+..+|
T Consensus 272 ~l~~~~~~~~~~~~~-~~~-~~~~~~ig~~l~~--~~~~~~~~~~~~~~~~~~l~~~G~~~-~~p~~~~~al~~~~~~~G 346 (413)
T PRK15403 272 AIVARFVKDPTEPRF-IWR-AVPIQLVGLALLI--VGNLLWPHVWLWSVLGTSLYAFGIGL-IFPTLFRFTLFSNNLPKG 346 (413)
T ss_pred HHHHHHhccCCchhH-HHH-HHHHHHHHHHHHH--HHHHHccccHHHHHHHHHHHHHHHHH-HhHHHHHHHhccCCCCCc
Confidence 777765543322211 000 0011111111111 11001122221111111 11222221 112222111111223468
Q ss_pred HHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198 243 VLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 281 (301)
Q Consensus 243 ~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~ 281 (301)
++.++.+.....+..+++...|++.++ +-...|....+
T Consensus 347 ~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~ 384 (413)
T PRK15403 347 TVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAV 384 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 888888998888899999999998887 34555544433
No 65
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.84 E-value=8.3e-19 Score=159.99 Aligned_cols=261 Identities=10% Similarity=0.092 Sum_probs=162.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|.+.++..++ +|+|+++.+......++|.++|+++++++.+++|||.+|++.++..++. ++.....||+++++ +
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~---~ 186 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM-LLGQLLRPTIMPQG---E 186 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHHccCCCCCcc---c
Confidence 5556666666 5678888999999999999999999999999999999999866543332 22222233321110 1
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++++ .++ ...++++++|+|++|...+..++.........+++|.|+++ .|+|..+.+.+.....++..+
T Consensus 187 -~~~~-------~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~ 255 (382)
T PRK11128 187 -SRQQ-------ESA--GWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVL 255 (382)
T ss_pred -cccc-------ccc--ccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence 1000 000 12357889999999987776666666666778888999964 799999999988877788888
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~ 240 (301)
..++.|++.||+++|+ .+ ....+..++........+++...+. ....+.+.+.+ .+.......+..+++
T Consensus 256 ~~~~~g~l~~r~~~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~ 325 (382)
T PRK11128 256 IFAFSNRLFRRWSARD--------LL-LLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVC-HLAAMRYIAARPGSE 325 (382)
T ss_pred HHHHHHHHHHHCCHHH--------HH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHhh
Confidence 8899999999987652 11 1122222222222223334433222 22222222221 122222233344555
Q ss_pred hHHHHHHHhHHH-hhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 241 SGVLLGLSNTAG-VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 241 ~g~a~g~~~~~~-~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
.+...+..+... ..|..++|.+.|.+.|+.|. ..+...+++.++++++.
T Consensus 326 ~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 326 VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFIR 375 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 677777766444 34568999999999999765 35555566666554443
No 66
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.83 E-value=1.6e-19 Score=166.73 Aligned_cols=268 Identities=11% Similarity=0.072 Sum_probs=159.8
Q ss_pred HhhccC--cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHH
Q 022198 8 LSKWVP--VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEK 85 (301)
Q Consensus 8 i~~~~p--~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 85 (301)
+.+|.+ +++||+..|......++|..+++++++.+.+ .+||++|++.+++.++...++....+|+|+++ +.+++++
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 205 (420)
T PRK09528 128 IEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTA-KVANALG 205 (420)
T ss_pred hhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchh-hhccchh
Confidence 344443 3566788899999999999999999998876 59999999877666554334333333322211 1001000
Q ss_pred HHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHH
Q 022198 86 KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFS 162 (301)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g 162 (301)
.++++....+.++++|||.+|...+..++....+.....|.|.|+.+.+ +.+..+.++...+..++..++
T Consensus 206 -------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 278 (420)
T PRK09528 206 -------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALI 278 (420)
T ss_pred -------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 0011101113456889998876555444443444456678888887654 556667788888888888899
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhc-cCCCc
Q 022198 163 ANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQD-IAPRY 240 (301)
Q Consensus 163 ~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~p~~ 240 (301)
.+++|+++||+++|+.. . .+.....+........+++...+.+... +.+.... .........+ .+++.
T Consensus 279 ~~~~g~l~dr~g~~~~~--------~-~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~ 348 (420)
T PRK09528 279 MFFAPFIINRIGAKNAL--------L-LAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRL 348 (420)
T ss_pred HHHHHHHHHHhCcchhh--------H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccc
Confidence 99999999999876321 1 1111111111112223344333222111 1111111 1112222233 34566
Q ss_pred hHHHHHH-HhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhc
Q 022198 241 SGVLLGL-SNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFS 294 (301)
Q Consensus 241 ~g~a~g~-~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~ 294 (301)
+++..+. .|...++|+.++|.+.|++.|+.||+..|...+++.+++.+......
T Consensus 349 ~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 349 SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 7766554 57778899999999999999998899999988777776655544443
No 67
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.83 E-value=3.6e-18 Score=156.17 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=119.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
+....++.|++|+|+|+++.+..+....+|..+++.+++.+.+.+|||+.|++.+.+.++..++.....+|++++++
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--- 186 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARA--- 186 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc---
Confidence 34667899999999999999999999999999999999998888999999999877765544333334444332110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+++. + ...+.++.+|+|+++...+...+.......+..+.|.++++++|++..+.+.......++..+
T Consensus 187 ~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 254 (392)
T PRK10473 187 PAAS----------S--KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMT 254 (392)
T ss_pred CCcc----------c--hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0000 0 011234578888877655444443344556677889999999999999999888888899999
Q ss_pred HHHHHHHHHHHHHHc
Q 022198 162 SANLGGWIADTLVSK 176 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r 176 (301)
+.++.+++.||+++|
T Consensus 255 ~~~~~~~l~~r~g~~ 269 (392)
T PRK10473 255 VSFSTPFALGIFKPR 269 (392)
T ss_pred HHHHHHHHHHhcCHH
Confidence 999999999999876
No 68
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.83 E-value=9.4e-19 Score=157.88 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=119.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--------CchhHHhhhhhHHHHHHHHhhh-ccC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--------WPSVFYSFGSLGTVWFTVWLSK-AHS 72 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--------WR~~F~~~g~l~~~~~~~~~~~-~~~ 72 (301)
|+..+++.|++|+|||+++.++...+.++|.++++.+++.+.+.+| ||.+|++.+++.++. .+.... .+|
T Consensus 102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~-~~~~~~~~~e 180 (356)
T TIGR00901 102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPG-LLVTLFLAKE 180 (356)
T ss_pred HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHH-HHHHHHhccC
Confidence 4567889999999999999999999999999999999999998888 999999877655443 222222 333
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChh---HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198 73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPP---VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG 149 (301)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~ 149 (301)
|+++++.++++++. .+.++++++++|. .+...+..++...+.+...+|+|+|+++ +|++.++.+
T Consensus 181 -~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g 247 (356)
T TIGR00901 181 -PQEDASVPKPLTQA-----------VLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIA 247 (356)
T ss_pred -CCcccccchhHHHH-----------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence 33221111111100 0114566778775 6666666666667788889999999987 899999998
Q ss_pred hHhhhhH-HHHHHHHHHHHHHHHHHHHc
Q 022198 150 LFCVLPW-LTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 150 ~~~~~~~-i~~~~g~~~~G~l~Dr~~~r 176 (301)
.+..... ++..++.+++|+++||+++|
T Consensus 248 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 275 (356)
T TIGR00901 248 LVAKINGLLGAILGGLIGGIIMQPLNIL 275 (356)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8776554 57789999999999999876
No 69
>PRK10133 L-fucose transporter; Provisional
Probab=99.83 E-value=2.4e-18 Score=159.78 Aligned_cols=270 Identities=10% Similarity=0.107 Sum_probs=164.2
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------------------h--------cCCchhHHhh
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------------------R--------FGWPSVFYSF 55 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------------------~--------~gWR~~F~~~ 55 (301)
+++.+++.++.|+++|.+.++..+...++|..+|+.+++.+.. . .+||++|+..
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~ 215 (438)
T PRK10133 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_pred hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888999999999999999988765440 0 3677777653
Q ss_pred hhhHHHHHHHH-hhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHH
Q 022198 56 GSLGTVWFTVW-LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 134 (301)
Q Consensus 56 g~l~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp 134 (301)
..+..+...+. .+..||.|+++ ++++ ++.+ ...++++++|+|.++...+..++...+.++...|+|
T Consensus 216 ~~v~~~~~~~~~~~~~p~~~~~~----~~~~--------~~~~-~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (438)
T PRK10133 216 VAIVLLVALLIMLTKFPALQSDN----HSDA--------KQGS-FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI 282 (438)
T ss_pred HHHHHHHHHHHHHhcCCCCCccc----cccc--------cccc-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332222222 22222211110 0000 0000 011346789999988776666666667777889999
Q ss_pred HHH-HHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH
Q 022198 135 TYY-NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL 213 (301)
Q Consensus 135 ~~l-~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (301)
.|+ ++.+|+|+.++++...+..+++.+|.+++|++.||+++|+. +.....+....... .....+......
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--------l~~~~~~~~~~~~~-~~~~~~~~~~~~ 353 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--------LAAYALIAMALCLI-SAFAGGHVGLIA 353 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH--------HHHHHHHHHHHHHH-HHHcCChHHHHH
Confidence 996 56789999999999999999999999999999999987621 11111111111111 111112211222
Q ss_pred HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHHHHHh
Q 022198 214 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~~~~~ 292 (301)
+...+++.+ ...+..++...+..|++.+++.++.+. ...++.++|.+.|.+.|+.| .+..|.+...+++.. +.+..
T Consensus 354 ~~l~glg~~-~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~-~~~~~ 430 (438)
T PRK10133 354 LTLCSAFMS-IQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI-FIFAR 430 (438)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHHHH
Confidence 222233322 223445555555566767777777653 55788999999999999866 777877655444443 33344
Q ss_pred hcCC
Q 022198 293 FSTG 296 (301)
Q Consensus 293 ~~~~ 296 (301)
..+|
T Consensus 431 ~~~~ 434 (438)
T PRK10133 431 FRSQ 434 (438)
T ss_pred Hhhc
Confidence 4433
No 70
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.5e-18 Score=149.92 Aligned_cols=256 Identities=16% Similarity=0.198 Sum_probs=179.1
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-CCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHH
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-GWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPA 83 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~ 83 (301)
...+-+.||+ +-+..+|++.+...+|..+++.+...+.++. |||......+.++++.++.|++.. .+++ .+ +.
T Consensus 121 PslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~-~r~~-~~--~~- 194 (395)
T COG2807 121 PSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA-LREQ-AA--SI- 194 (395)
T ss_pred hHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc-cccc-cc--cc-
Confidence 3567788876 7899999999999999999999999998887 799999998999888777787642 1110 00 00
Q ss_pred HHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHH
Q 022198 84 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSA 163 (301)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~ 163 (301)
+.+ ..+-++++|+|..|...+...+++..+|....|+|.++.| +|+|..++|.+..+..+...+.+
T Consensus 195 -----------~~~--~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 195 -----------ATK--LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred -----------ccc--cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHH
Confidence 000 1122358999999999998889999999999999999985 59999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCCCch
Q 022198 164 NLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAPRYS 241 (301)
Q Consensus 164 ~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~ 241 (301)
+..-.+.+|...++ ...........+ ++-..+.....+...+.+ .+.+- +.|.........+...|+..
T Consensus 261 ll~P~la~R~~n~r-------~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~l--lG~G~G~~F~laL~li~~rs~~a~~A 331 (395)
T COG2807 261 LLIPLLARRSKNQR-------PLVVLALLLMLVGLVGLLLAPGQLPILWALL--LGLGQGGAFPLALTLILLRSSDAAIA 331 (395)
T ss_pred HHHHHHHHHhcccc-------hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhCccchHHHHHHHHHHhhcCChHHH
Confidence 99999999965442 221111111111 111111122233333222 22221 12332222233344567888
Q ss_pred HHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHH
Q 022198 242 GVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 242 g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~ 289 (301)
+.-+|..+.+|++-+++||.+.|++-|. ++|...+...+...++..+.
T Consensus 332 a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 332 AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 88998877665555544433
No 71
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.83 E-value=6.3e-19 Score=181.46 Aligned_cols=269 Identities=12% Similarity=0.058 Sum_probs=173.4
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
.|+..+++.+++|+++|++++|+.+++.++|.++|+++++++.+.+|||+.|+..++..++. .+...+.++.++.++..
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 204 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKTGNAAPDL 204 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCC
Confidence 37889999999999999999999999999999999999999999999999995544433332 22223344433221111
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
+.... ... .....++.+.++|.+|...+..++.....+.+.+|+|.|+++.+|.++.+.+++.....+++.
T Consensus 205 ~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ 275 (1140)
T PRK06814 205 KIDRN-IIR--------STITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVA 275 (1140)
T ss_pred eeccc-hHH--------HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 10000 000 001135678899999988877776666677788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH---------------HhhccCChHH-HHHHHHHHHhhhhh
Q 022198 161 FSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT---------------QLSHVDSPAM-AVLCMACSQGTDAF 224 (301)
Q Consensus 161 ~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (301)
+|.++.|+++||..+++...... .........+... .+....+... .+..+..+++.+.+
T Consensus 276 ig~~~~g~l~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (1140)
T PRK06814 276 VGSFLASKLSEGRITLLYVPIGA----LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLY 351 (1140)
T ss_pred HHHHHHHHHhCCceeeeeehHHH----HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHh
Confidence 99999999998765443221110 0011100000000 0000012211 12222222222222
Q ss_pred hhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198 225 SQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL 284 (301)
Q Consensus 225 ~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~ 284 (301)
. ....+..++. +++.+|.+.|+.|...+++..+++.+.|.+.+. .+....+.+.+.+.+
T Consensus 352 ~-~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 412 (1140)
T PRK06814 352 I-VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANL 412 (1140)
T ss_pred H-HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 2234444444 456899999999999999999999999999864 456665555444333
No 72
>TIGR00898 2A0119 cation transport protein.
Probab=99.82 E-value=4e-18 Score=160.98 Aligned_cols=279 Identities=14% Similarity=0.026 Sum_probs=155.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC-C
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ-L 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~-~ 80 (301)
|....++.|++|+++|+++.++...+..+|.++++.++..+.+ ||+.|++.+++.++..+.+ ...||+|+.... -
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~ 274 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQG 274 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCC
Confidence 5677899999999999999999999999999999988776654 9999999887766543333 456787753110 0
Q ss_pred CHHH-HHHHH---h---------------ccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh
Q 022198 81 RPAE-KKLIV---S---------------SCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL 141 (301)
Q Consensus 81 ~~~~-~~~~~---~---------------~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~ 141 (301)
+.+| .+... + ++..++..++.++++++|+|.++...+....... ...+..+...+..+..
T Consensus 275 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 353 (505)
T TIGR00898 275 RIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF-TTAFSYYGLVLDLGNL 353 (505)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH-HHHHHHHHHhcccccc
Confidence 1111 11000 0 0000001112467889999988765443322211 1122222222222334
Q ss_pred CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHHHHHH-H
Q 022198 142 HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVLCMAC-S 218 (301)
Q Consensus 142 g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~ 218 (301)
+.+.. ....+..+...++.++.++++||+|||.. + ....+..++. ...+.........+..... .
T Consensus 354 ~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 421 (505)
T TIGR00898 354 GGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYT--------M-AASLLLAGVALLLLLFVPVDLYFLRTALAVLGK 421 (505)
T ss_pred CCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHH--------H-HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 55432 22334456778899999999999986521 1 1111111111 1111121211222221111 1
Q ss_pred HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH-HHHhhcCC
Q 022198 219 QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA-VWNLFSTG 296 (301)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~-~~~~~~~~ 296 (301)
++.. ......+....|..| +.|+++.|+.+..+++|+.++|.+.+ + +..+....+.+.++..+++.+ .+.+-+|+
T Consensus 422 ~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 422 FGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 1111 111223444556666 57999999999999999999999998 4 333455555555555555433 33334666
Q ss_pred cccc
Q 022198 297 EKVV 300 (301)
Q Consensus 297 ~~~~ 300 (301)
++.+
T Consensus 499 ~~~l 502 (505)
T TIGR00898 499 GVPL 502 (505)
T ss_pred CCCC
Confidence 6554
No 73
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.82 E-value=8.6e-18 Score=153.20 Aligned_cols=257 Identities=12% Similarity=0.004 Sum_probs=156.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+.+.++.|+++|+++++.++.+.++|..+|+.+++.+.+...|+..+.. +.+......+... +.+|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~---- 185 (381)
T PRK03633 113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILPLLFT--RILNQQA---- 185 (381)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHHHHHh--cccCCCC----
Confidence 33456677889999999999999999999999999999998876544444332 3222111112111 1111110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+ +++ +.++++.+|+|..+......+..........+|+|.|+++ .|.|..+++.+.....++..+
T Consensus 186 ~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~ 250 (381)
T PRK03633 186 E------------NHD--STSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGIL 250 (381)
T ss_pred C------------CCC--CCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 0 000 1234567888887765443333333455567899999976 599999999988888899999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccC-CCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~ 240 (301)
+.+..|++.||+++|+. +. .......+....... ...........+.+.. ...+...+...+.. ++.
T Consensus 251 ~~~~~g~l~dr~~~~~~--------l~-~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~ 318 (381)
T PRK03633 251 GQWPIGRLADRFGRLLV--------LR-VQVFVVILGSIAMLS--QAAMAPALFILGAAGF-TLYPVAMAWACEKVEHHE 318 (381)
T ss_pred HHhhhHHHHHHcCcHHH--------HH-HHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHH
Confidence 99999999999986521 11 111111111111111 1111111111111111 11122223233433 445
Q ss_pred hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
++...+..+...++|+.++|.+.|++.|+.++...|.+.+.+.+++.+.+.+
T Consensus 319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 6666777778888999999999999999988999998887777766555443
No 74
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.81 E-value=1e-17 Score=149.46 Aligned_cols=241 Identities=29% Similarity=0.475 Sum_probs=174.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|||+++.++.+...++|..+++.+++.+.+..+||+.|++.+.+.++..+.... .+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------- 174 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL---------- 174 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH----------
Confidence 5667899999999999999999999999999999999999999999999999877665543222211 10
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
|.++...+..++..........+.|.++++.+|.+..+.+.......++..+
T Consensus 175 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 226 (352)
T cd06174 175 ----------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226 (352)
T ss_pred ----------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4555666666666777888899999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-C
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-R 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~ 239 (301)
+.++.++++||+++|+. .+ ........+........++....... ...+.+.+. ..+.......+..| +
T Consensus 227 ~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 297 (352)
T cd06174 227 GALLGGLLSDRLGRRRL-------LL-LIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGF-AFPALLTLASELAPPE 297 (352)
T ss_pred HHHHHHHHHHHHHhhhH-------HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHH
Confidence 99999999999987620 11 11121111111112222233222221 112222221 12223334445555 7
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+++...++.+...++++.++|.+.|.+.|+.++...+.+.+++.+++.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 298 ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999998889999988888877776554
No 75
>PRK10054 putative transporter; Provisional
Probab=99.81 E-value=3.3e-18 Score=156.80 Aligned_cols=268 Identities=12% Similarity=0.076 Sum_probs=159.9
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+..+|.+|+|+|+++.|+.+...++|..+|+++++.+.+ +|||.+|++.+++.++..+......+|+++++ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~---~ 190 (395)
T PRK10054 115 TVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAI---A 190 (395)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccccc---c
Confidence 4456777899999999999999999999999999999998875 79999999877665543222222233322111 0
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh--CCCcchhhhHhhhhHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL--HFNLTESGLFCVLPWLTM 159 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~--g~s~~~~~~~~~~~~i~~ 159 (301)
++++ + ..+.++++|||+++...+..++.......+..|.+.|+.+.. +.+....+.+.....+..
T Consensus 191 ~~~~---------~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 257 (395)
T PRK10054 191 TETG---------S----VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMV 257 (395)
T ss_pred cchh---------h----hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhhe
Confidence 0000 0 011256889999888777777666666667778888886543 444445565555555555
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHHHHhhhhh-hhcchhhhhhccC
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMACSQGTDAF-SQSGLYSNHQDIA 237 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 237 (301)
.......|++.||.++|.. + ..++...++....... .++....... ...++.+.. ..+.......+..
T Consensus 258 ~~~~~~~g~~~~~~~~~~~--------l-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~p~~~~~~~~~~ 327 (395)
T PRK10054 258 VSLQYSVGRRLNAANIRPL--------M-TAGTLCFVIGLVGFIFSGNSLLLWGMS-AAVFTVGEIIYAPGEYMLIDHIA 327 (395)
T ss_pred eeehhHHHHHHccCCchhH--------H-HHHHHHHHHHHHHHHHcchHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhC
Confidence 5666777888888765421 1 1111111111111111 1222212111 112222211 1122233333443
Q ss_pred C-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCcc
Q 022198 238 P-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEK 298 (301)
Q Consensus 238 p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 298 (301)
| +.++...+..+ .+.+|..+||.+.|++.|+.|....|.+.+....++.++ +.-+.+||
T Consensus 328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (395)
T PRK10054 328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL-MLKGMRAR 387 (395)
T ss_pred CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH-HHhccccC
Confidence 4 56777777644 667899999999999999988888887765555554443 33455554
No 76
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.80 E-value=3.3e-18 Score=156.71 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=155.5
Q ss_pred chhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCC
Q 022198 15 AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCAS 94 (301)
Q Consensus 15 ~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 94 (301)
+++++..|......++|..+|+++++.+.+ +|||.+|++.+.++++..++.+...+|+|+++ + +++ . .+ .+
T Consensus 129 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~-~~-~~ 199 (396)
T TIGR00882 129 RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSA-T----VAN-A-LG-AN 199 (396)
T ss_pred hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhh-h----hhc-c-cc-cc
Confidence 344556777888889999999999887755 69999999987777665433333223322110 0 000 0 00 00
Q ss_pred CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHHHHHHHHHHH
Q 022198 95 KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIAD 171 (301)
Q Consensus 95 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D 171 (301)
+++.+..+.++++|||++|...+..++....+.....|.|.|+++.+ +.+..+.+....+..+...++.+..|++.|
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~ 279 (396)
T TIGR00882 200 ASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN 279 (396)
T ss_pred cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111225678999999887666555544455556678999998765 455566787777777888889999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhh-hhhcchhhhhhc-cCCCchHHHHHH-H
Q 022198 172 TLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDA-FSQSGLYSNHQD-IAPRYSGVLLGL-S 248 (301)
Q Consensus 172 r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~p~~~g~a~g~-~ 248 (301)
|+++|+.. .++....++........+++....... ...+... ..........++ .+++.++++.+. .
T Consensus 280 r~g~~~~l---------~~~~~l~~l~~~~~~~~~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~ 349 (396)
T TIGR00882 280 RIGAKNAL---------LIAGTIMSVRIIGSSFATTALEVVILK-MLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGF 349 (396)
T ss_pred HhccchhH---------HHHHHHHHHHHHHHHhcCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHH
Confidence 99876321 111111111111122233443332221 1122111 111111122222 334556665544 5
Q ss_pred hHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 249 NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 249 ~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
+....+|+.++|.+.|++.|..|+...|.+.+++.++..++
T Consensus 350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999988999999988887776554
No 77
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.79 E-value=8.8e-18 Score=155.55 Aligned_cols=244 Identities=14% Similarity=0.125 Sum_probs=149.1
Q ss_pred hhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-------hhcCCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198 5 NNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLI-------HRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 76 (301)
Q Consensus 5 ~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-------~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~ 76 (301)
.++..|.. +++||++..++-+.+.++|..++..+.+.+. +..|||++|.+.++++++.........+|++++
T Consensus 121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~ 200 (437)
T TIGR00792 121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE 200 (437)
T ss_pred hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC
Confidence 45667776 6799999999999988888877766655444 256899999998888766544433444544321
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198 77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW 156 (301)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~ 156 (301)
.++ +++ ++.+ .+..++++++||+++...+..++...+.+....+.+.|.+..+| +..+.+.+.....
T Consensus 201 ~~~---~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 267 (437)
T TIGR00792 201 IPK---NIE--------KKLS-LKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAI 267 (437)
T ss_pred CCc---ccc--------cCCC-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHH
Confidence 110 000 0000 01235678899999887777776666666666666666665555 4556666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH--HHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhh
Q 022198 157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF--FLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNH 233 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 233 (301)
++..++.++.++++||+++|+. .. .+....++ ....+.. ++....+.+ ...+.+.+.. .+..++..
T Consensus 268 i~~ii~~~~~~~l~~r~g~~~~--------~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 336 (437)
T TIGR00792 268 VAGLIGVLLFPRLVKKFGRKIL--------FA-GGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFV-TGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8999999999999999986521 11 11111111 1111111 222222221 2222222211 11122222
Q ss_pred hcc--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 234 QDI--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 234 ~~~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
.|. .++.+|...|+.+...++++++++.+.|++.|..|+
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 221 235679999999999999999999999999987555
No 78
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.78 E-value=2.4e-17 Score=169.80 Aligned_cols=266 Identities=19% Similarity=0.136 Sum_probs=162.7
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh--------c-CCchhHHhhhhhHHHHHHHHhhhccC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR--------F-GWPSVFYSFGSLGTVWFTVWLSKAHS 72 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~--------~-gWR~~F~~~g~l~~~~~~~~~~~~~~ 72 (301)
|+..++++|++|+++|++++|+.+++.++|.++|+.+++++.+. + +|++.+.+..+...+..++.....++
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK 201 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence 66788999999999999999999999999999999999999876 3 45555554333332222222233455
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc-hhhhH
Q 022198 73 SPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT-ESGLF 151 (301)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~-~~~~~ 151 (301)
.|+..+..++.+.. .........++.++++|.++...+..++.....+...+|+|.|+++.+|++.. +.+++
T Consensus 202 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~ 274 (1146)
T PRK08633 202 VPAAAPEVFDKKKY-------LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYL 274 (1146)
T ss_pred CCCCCccccccccc-------ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHH
Confidence 44322111000000 00000012356788899888776666655556677889999999999999999 99999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHH-HHHHHHHhhhhhhhcchh
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAV-LCMACSQGTDAFSQSGLY 230 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (301)
.....++..++.++.|+++||+++++... ++.++.++....+....+....+ .+...+++.+.. .....
T Consensus 275 ~~~~~ig~~~g~~~~g~l~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 344 (1146)
T PRK08633 275 LAASAIGIGIGSLLAGRLSGRHIELGLVP---------LGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLF-IVPLN 344 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEccchh---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 88888999999999999999987653211 11111111111111122222222 222222222211 12223
Q ss_pred hhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198 231 SNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL 284 (301)
Q Consensus 231 ~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~ 284 (301)
+..++. +++.+|.+.++.+...++++.+++.+.+.+... .++...|.+.+.+.+
T Consensus 345 ~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 345 ALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 334444 456899999999999999888887776655443 244445554444333
No 79
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.77 E-value=1.5e-16 Score=146.51 Aligned_cols=257 Identities=13% Similarity=0.116 Sum_probs=153.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------------------------hcCCchhHHhh
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------------------------RFGWPSVFYSF 55 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------------------------~~gWR~~F~~~ 55 (301)
+++..++.+..|+|+|++.+++.+...++|..+|+.+++.+.. ..+||++|++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~ 192 (410)
T TIGR00885 113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII 192 (410)
T ss_pred hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999998887742 24799999988
Q ss_pred hhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHH
Q 022198 56 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT 135 (301)
Q Consensus 56 g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~ 135 (301)
+.+.++..+.+.. . +.|+.++ +++++ ++ .+.+.++++|+|+++...+..++......+..+|++.
T Consensus 193 a~~~~~~~~~~~~-~-~~p~~~~--~~~~~---------~~--~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~ 257 (410)
T TIGR00885 193 GAVVLAVALLIML-T-KMPALNH--SDAKQ---------IS--FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQ 257 (410)
T ss_pred HHHHHHHHHHHHH-h-cCCCCCc--ccccc---------cc--chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877654333322 2 1232110 00000 00 0113456889999888777767665556677899999
Q ss_pred HHHHHh-CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH
Q 022198 136 YYNQVL-HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC 214 (301)
Q Consensus 136 ~l~~~~-g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (301)
|+++.. +.+...++.+......+..+|.++++++.||+++|+ .+... ....++........++......+
T Consensus 258 y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~--------~l~i~-~~~~~~~~ll~~~~~~~~~~~~l 328 (410)
T TIGR00885 258 YAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK--------VLMAY-AIIGMALCLGSIFAGGHVGLYCL 328 (410)
T ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH--------HHHHH-HHHHHHHHHHHHHcCChHHHHHH
Confidence 997532 344444455555566788899999999999997652 21111 11111111111122222222222
Q ss_pred HHHHHhhhhhhhcchhhhhhccCCCchHH-HHHHHhHHHhhHHhHHHhHhhhhcccC------cchHHHHHHHHHHHH
Q 022198 215 MACSQGTDAFSQSGLYSNHQDIAPRYSGV-LLGLSNTAGVLAGVFGTAATGYILQHG------SWDDVFKVSVGLYLV 285 (301)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~-a~g~~~~~~~lgg~~~~~l~g~l~~~~------~~~~~f~~~~~~~~v 285 (301)
...+..... ..+..++...+..+++... +.++..+ -+||++.|.+.|++.|+. +.+..|.+...+++.
T Consensus 329 ~~~glf~s~-~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 329 TLCSAFMSL-MFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 222222211 1134455444444444333 3333332 389999999999999953 577777765555554
No 80
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.70 E-value=4.4e-15 Score=139.89 Aligned_cols=270 Identities=18% Similarity=0.164 Sum_probs=173.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|+-.+++.|..|+++..++.++.+...+++-.+||.++|.+...+|=.++|.+.++.-++ .+..+...+++++++ +.+
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~-~i~~l~~~~~~~~~~-~~~ 199 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLI-SILALLRWKPPPPPS-SLP 199 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcccccccc-ccc
Confidence 777899999999999999999999999999999999999999999988999986553332 222222222211111 111
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+ |+ . .+ . -+.-++-+.++|.+.......++.+.....+..-+|.+.++.+|.++...|++....++|+.+
T Consensus 200 ~-e~-~-~~-----~--l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~ 269 (524)
T PF05977_consen 200 R-ER-F-FS-----A--LREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAIL 269 (524)
T ss_pred h-hh-h-hh-----h--HHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 1 11 0 00 0 011234456677776655444444444444556689999999999999999999988899998
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCC-C
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAP-R 239 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p-~ 239 (301)
|+++.+++.+|+.+++ .+ ....+..++....+....+....+..+ ..+.+..... .......|...| +
T Consensus 270 Gal~~~~l~~~~~~~~--------lv-~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~ 339 (524)
T PF05977_consen 270 GALLLPRLRRRLSSRR--------LV-LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN-SSLNTLVQLSVPDW 339 (524)
T ss_pred HHHHHHHhhcccCcch--------hh-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHH
Confidence 8888888877764331 11 111222222222233333333322222 2222222221 222333444545 6
Q ss_pred chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 240 YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 240 ~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+|.+.++.++..+.+..+|..+.|.+.|+.|....+.+.++..+++.++....
T Consensus 340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999888888887777666666555444
No 81
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.70 E-value=2.3e-16 Score=152.30 Aligned_cols=175 Identities=14% Similarity=0.212 Sum_probs=126.6
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc----------------------CCchhHHhhhhhH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF----------------------GWPSVFYSFGSLG 59 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~----------------------gWR~~F~~~g~l~ 59 (301)
|...+++.|++|+++|++++|+++++..+|.++|+++++.+.+.+ +||..|++.++++
T Consensus 191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~ 270 (633)
T TIGR00805 191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA 270 (633)
T ss_pred hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999988643 2778899888887
Q ss_pred HHHHHHHhhhccCCCCCCCCC--CHHHHHHHHh-ccCC-CC---CCC--CCChHHhhcChhHHHHHHHHHhhHHHHHHHH
Q 022198 60 TVWFTVWLSKAHSSPAEDPQL--RPAEKKLIVS-SCAS-KE---PVK--TIPWGLILSKPPVWALIVSHFCHNWGTFILL 130 (301)
Q Consensus 60 ~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~-~~~~-~~---~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 130 (301)
++..+.++...++.|++.++. ++++++...+ +... .+ ..+ ...+++++|||.++...+..++.....+++.
T Consensus 271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~ 350 (633)
T TIGR00805 271 LLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI 350 (633)
T ss_pred HHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Confidence 665443333222333221111 1111100000 0000 00 000 0135679999999998888888888899999
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHHHc
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~~r 176 (301)
+|+|.|+++++|+++.+++++..+..+ ++.+|.+++|+++||++.+
T Consensus 351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 999999999999999999999877665 6789999999999998744
No 82
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.6e-16 Score=142.54 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=156.1
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC-CchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g-WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|.+.++++|.||.++|+++.++++.+.++|..+|.+.+..+..+-+ |||.|...++++++..++.....+| |++. ..
T Consensus 140 ~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e-P~rg-a~ 217 (493)
T KOG1330|consen 140 PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE-PERG-AR 217 (493)
T ss_pred ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC-cccc-cc
Confidence 7889999999999999999999999999999999999999988766 9999999999998876555544444 4321 00
Q ss_pred CHHHHHHHHhccCCCCCC--CCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhh
Q 022198 81 RPAEKKLIVSSCASKEPV--KTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLP 155 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~ 155 (301)
++.+ .+.+...+. .-.|.+.+.|+|.+-...+.+....+..-++.-|.|.+++..+ |.+..+...+..+.
T Consensus 218 ~~~~-----~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt 292 (493)
T KOG1330|consen 218 DEVD-----GENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVT 292 (493)
T ss_pred cccc-----cCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHH
Confidence 0000 000000110 0113444566666555444444444445556678888766443 55555555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHhhHHHHHHHHHhhccCChHH--HHHHHHHHHhhhhhhhcchh-
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRK--IMQSIGFLGPAFFLTQLSHVDSPAM--AVLCMACSQGTDAFSQSGLY- 230 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 230 (301)
..++.+|.++||.++||+.++.......+. .....+....+.++........... .+.+...+.....++.....
T Consensus 293 ~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~ 372 (493)
T KOG1330|consen 293 CAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNP 372 (493)
T ss_pred HhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 889999999999999998653222111111 1111222223333322222222221 11222111111111111111
Q ss_pred hhhhccCCCchHHHHHHHhHHHhhHHhHH-HhHhhhhccc-Ccch
Q 022198 231 SNHQDIAPRYSGVLLGLSNTAGVLAGVFG-TAATGYILQH-GSWD 273 (301)
Q Consensus 231 ~~~~~~~p~~~g~a~g~~~~~~~lgg~~~-~~l~g~l~~~-~~~~ 273 (301)
...+-++|+.|.++.++-...-.+.|-.+ |.++|.+.|+ .|+.
T Consensus 373 i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 373 IFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred eeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 11222467889998888777777655555 5599999998 4444
No 83
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.67 E-value=1.1e-14 Score=134.48 Aligned_cols=248 Identities=10% Similarity=0.091 Sum_probs=141.6
Q ss_pred hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCC
Q 022198 16 ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASK 95 (301)
Q Consensus 16 ~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (301)
.|.|..| ++|.++|+.+++.+.....|+. |++.+++.++..+ .....||+|+.+++.++..+ +
T Consensus 133 ~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~---------~ 195 (418)
T TIGR00889 133 PPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGV-FALTLPDIPVAKSTAKMSIK---------V 195 (418)
T ss_pred CCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHH-HHhcCCCCCCCccccccCHH---------H
Confidence 4455555 3677778888877744445664 5555555544332 23345665432111000000 0
Q ss_pred CCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCc--------chhhhHhhhhHHHHHHHHHHHH
Q 022198 96 EPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNL--------TESGLFCVLPWLTMAFSANLGG 167 (301)
Q Consensus 96 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~--------~~~~~~~~~~~i~~~~g~~~~G 167 (301)
+ .+.+.++++|+|+++...+..++..........+.|.|+++ .|.++ ++.+....+..+...++.+..|
T Consensus 196 ~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g 272 (418)
T TIGR00889 196 M--LGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIP 272 (418)
T ss_pred H--hhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 01134568899988877666666555555566888899875 46554 5668888888888889999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCCh---HHHHH-HHHHHHhhhhhhhcchhhhhhccCC-Cch
Q 022198 168 WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSP---AMAVL-CMACSQGTDAFSQSGLYSNHQDIAP-RYS 241 (301)
Q Consensus 168 ~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p-~~~ 241 (301)
+++||+++|+ .+ ..+.+...+....... ..+. ...+. ....+.+.+.. .+.......+..| +.+
T Consensus 273 ~l~dr~g~r~--------~l-~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~ 342 (418)
T TIGR00889 273 FFLKRFGIKK--------VM-LLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIR 342 (418)
T ss_pred HHHHHhCcHH--------HH-HHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHH
Confidence 9999998652 11 1222222221111111 1111 11111 11112222211 1222223344444 689
Q ss_pred HHHHHHHh-HHHhhHHhHHHhHhhhhccc------CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 242 GVLLGLSN-TAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 242 g~a~g~~~-~~~~lgg~~~~~l~g~l~~~------~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.+.|+.+ ....+|+.++|.+.|++.|+ .||+..|.+.+++.+++++.+..+
T Consensus 343 g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 343 ASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 56778999999999999997 358889988777766665554444
No 84
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=4.4e-15 Score=139.31 Aligned_cols=281 Identities=15% Similarity=0.222 Sum_probs=183.1
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCC---
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQ--- 79 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~--- 79 (301)
++..++.+||+ |+|++|.|+..+|..+|..+=+++...+.+.+|||..+++.+.+.+-.........|..|+..+.
T Consensus 155 paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~ 233 (509)
T KOG2504|consen 155 PAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEK 233 (509)
T ss_pred chhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhh
Confidence 34556676665 59999999999999999999999999999999999999998777654333333333322221111
Q ss_pred --------------------------CCH----HHHHHHHhccCCC-CCCCCCCh---HHhhcChhHHHHHHHHHhhHHH
Q 022198 80 --------------------------LRP----AEKKLIVSSCASK-EPVKTIPW---GLILSKPPVWALIVSHFCHNWG 125 (301)
Q Consensus 80 --------------------------~~~----~~~~~~~~~~~~~-~~~~~~~~---~~ll~~~~~~~~~~~~~~~~~~ 125 (301)
..+ ++....+.+++.. .+.++... .++|++|.++...+...+...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g 313 (509)
T KOG2504|consen 234 DLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLG 313 (509)
T ss_pred hhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHH
Confidence 000 0000000000000 01111111 4689999999888888888888
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
++....++|.|.+ .+|++..++.+...+.++...++.++.|+++||...+ ++.+..+.++...+........
T Consensus 314 ~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~-------~~~~~~~~ll~~gl~~~~~p~~ 385 (509)
T KOG2504|consen 314 FNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR-------ALVLFLLTLLIAGLARLFLPFA 385 (509)
T ss_pred HHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 6799999999999999999999999999999987532 1222222222222222222222
Q ss_pred CCh-HHHHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHH
Q 022198 206 DSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGL 282 (301)
Q Consensus 206 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~ 282 (301)
.+. .+...++..++..+.+.... .....+.. .+.-..+.|+...+..++..++|.+.|++.|. +.|...|.+.+..
T Consensus 386 ~~~~~l~~~~~~fG~~~g~~~~l~-~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~ 464 (509)
T KOG2504|consen 386 TTYVGLIVFSILFGFCVGSFSSLT-PVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC 464 (509)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH
Confidence 222 23333444444433332111 11223343 45567788999999999999999999999998 5599999998888
Q ss_pred HHHHHHHHHhh
Q 022198 283 YLVGTAVWNLF 293 (301)
Q Consensus 283 ~~v~~~~~~~~ 293 (301)
.+++...+...
T Consensus 465 ~~~s~~~~~~~ 475 (509)
T KOG2504|consen 465 FLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHHHh
Confidence 88877665544
No 85
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.66 E-value=1.2e-13 Score=128.83 Aligned_cols=285 Identities=19% Similarity=0.200 Sum_probs=181.3
Q ss_pred hhhHhhccCcchh--------------------------HHHHHHHHhhhhhhHHHHhhhHHHHhhh--------cCCch
Q 022198 5 NNILSKWVPVAER--------------------------SRSLALVYSGMYLGSVTGLAFSPFLIHR--------FGWPS 50 (301)
Q Consensus 5 ~~~i~~~~p~~~r--------------------------g~a~~~~~~g~~lG~~~g~~l~~~l~~~--------~gWR~ 50 (301)
++++.+..+++++ ++..+.=..-+++|.++...+.-.+... +.=|.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 4667778877777 8999988888888888877766555332 22367
Q ss_pred hHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHH
Q 022198 51 VFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILL 130 (301)
Q Consensus 51 ~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 130 (301)
.+.+.++--++..+.++...||.|+.++ .++.+.. ....- ++. ...++++.|+|.+....+..++.+-+..++.
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~~~~-~~~~~~~-~~~g~--~~l--~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~ 301 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPGPRP-LPSGSSY-LRFGF--KRL--WRTFKEIRKLRQLFLFLIAYFLYSDGVNTII 301 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCcchhH-HHHHH--HHH--HHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 7776555444444444555566554111 1111100 00000 000 1134566677888887888887777889999
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh------c
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------H 204 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 204 (301)
.....|.++++|+|..+...+.....+.+++|.++.|++.||+|.|.. +..+..+...........++ .
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-----~~l~~~l~~~~~i~~~g~~G~~~~~~g 376 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-----RTLLISLILWIIIPLYGLFGFWPSFFG 376 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-----HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 999999999999999999999999999999999999999999986621 11111111111111111110 1
Q ss_pred cCChHH-HHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHH
Q 022198 205 VDSPAM-AVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVG 281 (301)
Q Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~ 281 (301)
..++.. .+.-...+...+.. ++.-=+...+.- |++.+...|+.+..++..+.+||.+.|.+.|. ++.+.++....+
T Consensus 377 ~~~~~~f~~~a~~~G~~~G~~-qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~ 455 (477)
T PF11700_consen 377 LKSPWEFWVLAVLIGLFMGGI-QSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV 455 (477)
T ss_pred cccHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 122221 12112222222221 111112233444 45779999999999999999999999999998 558889999999
Q ss_pred HHHHHHHHHHhhcCCccccC
Q 022198 282 LYLVGTAVWNLFSTGEKVVD 301 (301)
Q Consensus 282 ~~~v~~~~~~~~~~~~~~~~ 301 (301)
+.+++++++..++.+++..|
T Consensus 456 lf~~gl~ll~~v~~~~g~~~ 475 (477)
T PF11700_consen 456 LFLIGLILLFFVDVEKGRED 475 (477)
T ss_pred HHHHHHHHHhhccchhhhhc
Confidence 99999988888877776654
No 86
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.3e-14 Score=128.19 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=163.9
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhH--HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC--CC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFS--PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP--QL 80 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~--~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~--~~ 80 (301)
.-++.|..|++.||....+...+..+|.+++..++ ..+.+.-.|++.+....++.++. .+.+++.||+||..- +-
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~ 216 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKG 216 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcC
Confidence 45789999999999999999999999999997665 33445667999999877666554 455667899997321 11
Q ss_pred CHHHHHH-H---H-------------hc--cCCCCCCCCCChHHhhcChhHHHHHH----HHHhh-HHHHHHHHHhHHHH
Q 022198 81 RPAEKKL-I---V-------------SS--CASKEPVKTIPWGLILSKPPVWALIV----SHFCH-NWGTFILLTWMPTY 136 (301)
Q Consensus 81 ~~~~~~~-~---~-------------~~--~~~~~~~~~~~~~~ll~~~~~~~~~~----~~~~~-~~~~~~~~~wlp~~ 136 (301)
+++|.++ . + ++ ..+.++.++.++++++++|.++.-.. ..+++ .-+.+....|.-.+
T Consensus 217 ~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 217 DEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred CHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 1111110 0 0 00 01111124557889999987665322 22222 22445555666555
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA 216 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (301)
++ +-|++..++.+.....++...+.++++.++.||.|||.+..... ....+..+...+......... +.....++.
T Consensus 297 ~~-~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~--~~~~~~~~~~~~~~~l~~~~~-~~~~y~~i~ 372 (485)
T KOG0569|consen 297 FK-TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL--SLMAVALLLMSIALFLSNSFG-SWLSYLCIA 372 (485)
T ss_pred HH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 54 56999999999999999999999999999999999875433221 111111111111111111111 111111111
Q ss_pred HHHhh-hhhh---hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198 217 CSQGT-DAFS---QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 217 ~~~~~-~~~~---~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
+.+.. ..++ .+.-+-...|..| +.|..+..+......+...+-....-.+.+..|- ..|...++...++.+...
T Consensus 373 ~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 373 AIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence 11111 1111 1112233456655 5788888877777666555555555555555222 444444444444433322
Q ss_pred hh--cCCcccc
Q 022198 292 LF--STGEKVV 300 (301)
Q Consensus 292 ~~--~~~~~~~ 300 (301)
+. +|++|..
T Consensus 452 ~~lPETkgr~~ 462 (485)
T KOG0569|consen 452 RYLPETKGRTP 462 (485)
T ss_pred HhCcccCCCCH
Confidence 22 7777753
No 87
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.61 E-value=3.2e-13 Score=119.80 Aligned_cols=248 Identities=13% Similarity=0.128 Sum_probs=158.7
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------------------cCCchhHHhhhhhHHHHH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------------------FGWPSVFYSFGSLGTVWF 63 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------------------~gWR~~F~~~g~l~~~~~ 63 (301)
+++.+++...|+++-.+.+.+.+.-.++|..+||++++.++.+ -.||++|.+.+...++..
T Consensus 124 aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~ 203 (422)
T COG0738 124 AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLA 203 (422)
T ss_pred ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999888762 259999988666654433
Q ss_pred HH-HhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC
Q 022198 64 TV-WLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH 142 (301)
Q Consensus 64 ~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g 142 (301)
+. .+.+.||.++++++ +...++...++++|+|.++...+..|+.-..--...+|+++|+.|..|
T Consensus 204 v~~~~~k~p~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g 268 (422)
T COG0738 204 VLILLSKLPDLQVAAPS---------------LGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLG 268 (422)
T ss_pred HHHHhccCCcCCccccc---------------ccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 22 22222222211110 000011135679999999998888888766667788999999998889
Q ss_pred CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HHHHhh
Q 022198 143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGT 221 (301)
Q Consensus 143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 221 (301)
.+..++..+.+....+..+|.+++-++-.|+... |.+.....+...++. .....++. +.+... .++...
T Consensus 269 ~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~--------k~Laf~a~~~ill~~-~~~l~~g~-v~~~~l~~ig~F~ 338 (422)
T COG0738 269 LNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE--------KYLAFYALIAILLLL-AVALIGGV-VALYALFLIGLFN 338 (422)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--------HHHHHHHHHHHHHHH-HHHHhcCh-HHHHHHHHHHHHh
Confidence 9999999999999999999999998888887532 222211111111111 11122222 222222 222222
Q ss_pred hhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198 222 DAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK 277 (301)
Q Consensus 222 ~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~ 277 (301)
....+..++...+.-|++...+.++ -..+-.||++-|.+.|++.|+.|....+.
T Consensus 339 -simfPTIfslal~~l~~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 339 -SIMFPTIFSLALKNLGEHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred -HHHHHHHHHHHHhccCcccccccee-eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 1222334444333334444433343 34456789999999999999976665544
No 88
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.59 E-value=6.2e-13 Score=124.79 Aligned_cols=289 Identities=15% Similarity=0.076 Sum_probs=151.4
Q ss_pred CchhhhHhhccCcch---hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHh--hh-ccCCCC
Q 022198 2 PAMNNILSKWVPVAE---RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL--SK-AHSSPA 75 (301)
Q Consensus 2 p~~~~~i~~~~p~~~---rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~--~~-~~~~p~ 75 (301)
|+..+++++++|+++ |+++.++.+.+.++|..+|+++++++.+.+|||+.|.+.++..++..+.+. ++ .+|.|+
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS 200 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 667789999998865 889999999999999999999999999999999999986643222211211 11 122332
Q ss_pred CCCCCCHHHHHHHHh-------------c--cCCCC----------------------CCCCCChHHhhcChhHHHHHHH
Q 022198 76 EDPQLRPAEKKLIVS-------------S--CASKE----------------------PVKTIPWGLILSKPPVWALIVS 118 (301)
Q Consensus 76 ~~~~~~~~~~~~~~~-------------~--~~~~~----------------------~~~~~~~~~ll~~~~~~~~~~~ 118 (301)
++++.++++++.... . ...+. .++..+..+-.|...+...++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 280 (475)
T TIGR00924 201 VPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLE 280 (475)
T ss_pred CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHH
Confidence 221122221110000 0 00000 0000001111111122222222
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHhCCCcch----hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 119 HFCHNWGTFILLTWMPTYYNQVLHFNLTE----SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~----~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+....+....+-+|.|.++..+.+... .+++..+..+.-.+..++-.++-.|..||+.......|. .++++.
T Consensus 281 ~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~--~~G~~l 358 (475)
T TIGR00924 281 AVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF--TLGMLF 358 (475)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH--HHHHHH
Confidence 22222233334555677776655554333 566777677776666666555555665542111111111 122222
Q ss_pred HHHH--HHHh----hc---cCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh
Q 022198 195 PAFF--LTQL----SH---VDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 195 ~~~~--~~~~----~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
.++. ...+ .. ..+..+.+.... .+.+-. +..+...+...+..| +.||...|+......+|..+++.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~ 437 (475)
T TIGR00924 359 CGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL-MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA 437 (475)
T ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1111 01 123333332222 222221 222333444445544 6899999999988888888988888
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
....+..++...|...+...+++.+++.+.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (475)
T TIGR00924 438 TFGAVPQGVTGVFGKIGLVTLLVGVVMALM 467 (475)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 877777778888877766666655554443
No 89
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.59 E-value=2e-13 Score=119.44 Aligned_cols=284 Identities=15% Similarity=0.144 Sum_probs=161.6
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|-..++-.|.-|..+|+.-+-.. .-+.+|.+....+.-..++.+||||..+..+.+. ..+..+.+..+|+||.+-.-.
T Consensus 184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~~~~G 261 (528)
T KOG0253|consen 184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPL-MFAARFLVWVYESPRFYLAKG 261 (528)
T ss_pred cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHH-HHHHHHHhhcccCcchhhhcC
Confidence 33445566777898998877666 8889999999999999999999999998877443 334455556789997431111
Q ss_pred HHHHH-----HHHh-----------------ccCCCC-----------CCCCCChHHhhcCh---hHHHHHHHHHhhHHH
Q 022198 82 PAEKK-----LIVS-----------------SCASKE-----------PVKTIPWGLILSKP---PVWALIVSHFCHNWG 125 (301)
Q Consensus 82 ~~~~~-----~~~~-----------------~~~~~~-----------~~~~~~~~~ll~~~---~~~~~~~~~~~~~~~ 125 (301)
++++. ++.+ ++++++ +......++++..+ +...++...|.+.+.
T Consensus 262 ~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafs 341 (528)
T KOG0253|consen 262 DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFS 341 (528)
T ss_pred ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHH
Confidence 11110 0000 000000 00112344455432 333445556666677
Q ss_pred HHHHHHhH-----------------HHHHHHHhCCCcc-hhhhH-hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q 022198 126 TFILLTWM-----------------PTYYNQVLHFNLT-ESGLF-CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 186 (301)
Q Consensus 126 ~~~~~~wl-----------------p~~l~~~~g~s~~-~~~~~-~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~ 186 (301)
+|+..... |++++-...-... +..+. ..+..+.-..|.++.+++.||+|||+ .
T Consensus 342 yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk--------T 413 (528)
T KOG0253|consen 342 YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK--------T 413 (528)
T ss_pred HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh--------H
Confidence 77765444 3333321111222 22333 34445778899999999999999763 1
Q ss_pred HHHHhhHHHHHHHH--HhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHh
Q 022198 187 MQSIGFLGPAFFLT--QLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 187 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
+ +..++..+++.. ......+....+.+.+-.+.-+.| ...|.+.+|++|. .|+++.|.....+++||++.|.+.
T Consensus 414 M-al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~f--qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 414 M-ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAF--QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred H-HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchh--eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 1 222222222222 122333444444444332222223 2345667888885 799999999999999999999987
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHhh--cCCcccc
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF--STGEKVV 300 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~--~~~~~~~ 300 (301)
...+..-....+. -+++.+++.+..+.+ +|++|++
T Consensus 491 -~~~e~s~sl~i~v-y~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 491 -MRAELSTSLPIFV-YGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred -HHhccceeehHHH-HHHHHHHHHHHheeeeeccCCCCC
Confidence 3323222223333 344555555555554 8888875
No 90
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.54 E-value=4.5e-12 Score=119.30 Aligned_cols=287 Identities=16% Similarity=0.159 Sum_probs=144.1
Q ss_pred CchhhhHhhccCcc--hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCC---
Q 022198 2 PAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE--- 76 (301)
Q Consensus 2 p~~~~~i~~~~p~~--~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~--- 76 (301)
|+..++++|.+|++ +|+++.++++.+.++|..+|+.+++++.+++|||+.|++.++ +++..++.+...++..++
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~ 202 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGS 202 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCC
Confidence 67789999999887 558899999999999999999999999999999999998533 433222211111111111
Q ss_pred CCCC-CHHHHHHH------------Hhc-cCCCCCC-----------------CCCChHHhhcChhHHHHHHH-HHhhHH
Q 022198 77 DPQL-RPAEKKLI------------VSS-CASKEPV-----------------KTIPWGLILSKPPVWALIVS-HFCHNW 124 (301)
Q Consensus 77 ~~~~-~~~~~~~~------------~~~-~~~~~~~-----------------~~~~~~~ll~~~~~~~~~~~-~~~~~~ 124 (301)
+++- +.+..+.. ... ....... .+..-++++|+|.+....+. .....+
T Consensus 203 ~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~ 282 (489)
T PRK10207 203 EPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFY 282 (489)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00100000 000 0000000 00000135566655443322 122233
Q ss_pred HHHH-HHHhHHHHHHHHhCCCcc----hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198 125 GTFI-LLTWMPTYYNQVLHFNLT----ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 199 (301)
Q Consensus 125 ~~~~-~~~wlp~~l~~~~g~s~~----~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
..|. ..+-+|.|.++..+.+.. ....+..+..+...+..++.+++.||+++|+.......|......+...+...
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~ 362 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLT 362 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3333 446777787754333211 12333333445666788888999999988753111111211111111111110
Q ss_pred -----HHhhcc---CChHHHHHH-HHHHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc-
Q 022198 200 -----TQLSHV---DSPAMAVLC-MACSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ- 268 (301)
Q Consensus 200 -----~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~- 268 (301)
...... .+..+.+.. ...+.+-.... +...+.. ...+++.+|.++|+.+...++|+.++..+......
T Consensus 363 ~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~-~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~ 441 (489)
T PRK10207 363 AAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFIS-ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVP 441 (489)
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHh-HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111111 122222211 22222222222 2222322 33455789999999999888888888777654421
Q ss_pred ---------cCcchHHHHHHHHHHHHHHHHH
Q 022198 269 ---------HGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 269 ---------~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
...+...|...+...+++.+++
T Consensus 442 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~ 472 (489)
T PRK10207 442 DNITDPLETLPVYTNVFGKIGLVTLGVAVVM 472 (489)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0124566666655555544443
No 91
>PRK09669 putative symporter YagG; Provisional
Probab=99.54 E-value=2.3e-12 Score=119.97 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=131.9
Q ss_pred hhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-------hcCCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198 5 NNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 76 (301)
Q Consensus 5 ~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~ 76 (301)
.++.+|+. +++||++..++-..+..+|..+++.+...+.. ..|||..+.+.+++..+.........+|+++.
T Consensus 131 ~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~ 210 (444)
T PRK09669 131 CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP 210 (444)
T ss_pred HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC
Confidence 46778887 66899998888887777777776654433332 35799898888877655433322233332111
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198 77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW 156 (301)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~ 156 (301)
+ ++ ++.+ ...++++++|||+++......++...+...... ...|+.+..--+.+..+.+.....
T Consensus 211 ~----~~----------~~~~-~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~ 274 (444)
T PRK09669 211 E----VD----------NSSS-VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGM 274 (444)
T ss_pred C----Cc----------CCCC-HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHH
Confidence 0 00 0000 112467789999988877666654444433333 334444322212233334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhh
Q 022198 157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQ 234 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
+...++.++.++++||+++|+. ..... .......... +...++.... +.....+.+.+... +..++...
T Consensus 275 i~~ii~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~am~a 345 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRVRA-------FKWTIVAFVILSALIF-FIPPSNVWLIFALNILFNFIQNLTT-PLQWSMFS 345 (444)
T ss_pred HHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHH-HhCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7778899999999999986521 11111 1111111111 1112233222 22222222222111 12222222
Q ss_pred ccC--------CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 235 DIA--------PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 235 ~~~--------p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
|.. .+..|...+..+...++|.++++.+.|.++|..|+
T Consensus 346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 221 23457888899999999999999999999987555
No 92
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.53 E-value=1.2e-12 Score=121.21 Aligned_cols=245 Identities=18% Similarity=0.234 Sum_probs=153.0
Q ss_pred hhhHhhccC-cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------CCchhHHhhhhhHHHHHHHHhhhccCCCCC
Q 022198 5 NNILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFGSLGTVWFTVWLSKAHSSPAE 76 (301)
Q Consensus 5 ~~~i~~~~p-~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~ 76 (301)
.++..|..+ ++||.+..+.-+....+|..+...+.+.+.+.+ |||+.+.+.+++.++...+.....+|++++
T Consensus 125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~ 204 (428)
T PF13347_consen 125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE 204 (428)
T ss_pred hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccc
Confidence 467788887 579999999999988888876655555554322 699999988887766544444444441111
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198 77 DPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW 156 (301)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~ 156 (301)
. ++++ ++..-+.++++++|||+++...+..++...+.....+..+-|.+...|.+ ...+.+.....
T Consensus 205 ~---~~~~----------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~ 270 (428)
T PF13347_consen 205 V---TEQE----------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFF 270 (428)
T ss_pred c---cccc----------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence 1 1100 11111235788999999998888888877777777777877888777777 55666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhc
Q 022198 157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
++..++.++.++++||+|+|+.-... ........+....... .+.... +.....+.+.+... ...++...|
T Consensus 271 ~~~~v~~~~~~~l~~r~gk~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad 342 (428)
T PF13347_consen 271 VASIVGSPLWGRLSKRFGKKKVYIIG------LLLAALGFLLLFFLGP-GSPWLVLILFILAGIGYGAFF-VIPWAMLAD 342 (428)
T ss_pred HHHHHHHHHHHHHHHHccceeehhhh------HHHHHHHHHHHHHHHh-hhHHHHHHHHHHhHhhhcccc-ccccccccc
Confidence 89999999999999999877432111 0111111111111211 233222 22222233322221 111222222
Q ss_pred c--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 236 I--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 236 ~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
. ..+..|...++.+...+++.++++.+.|.+++..|
T Consensus 343 ~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 343 VIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred chhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 1 12456999999999999999999999999887643
No 93
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.51 E-value=7.6e-13 Score=123.54 Aligned_cols=172 Identities=14% Similarity=0.159 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTTVRKIMQ 188 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~~~~~~~~~~~ 188 (301)
+.++..+...++..+.+|++..|+|.|+++++|+|..+++.+.........++.+++|+++||+ |||+ .+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr--------~il 80 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM--------AVM 80 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH--------HHH
Confidence 3566666666777889999999999999999999999999998888888899999999999999 8662 111
Q ss_pred HHhhHHHHHHHHHhhcc-CC-hHHHHHHHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhHHHhHh
Q 022198 189 SIGFLGPAFFLTQLSHV-DS-PAMAVLCMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
.+.+..++........ .+ ....+.......+.+.+ .+...+...|..| ++|.++.++.+..+++|+.++|.+.
T Consensus 81 -iG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 81 -LGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred -HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 1111111111111111 11 11111111111222211 1212233344444 2688889999999999999999999
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
|++.++.||+.+|...++..+++.+.+.
T Consensus 159 g~L~~~~Gw~~~F~iaaigm~l~li~~~ 186 (493)
T PRK15462 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFL 186 (493)
T ss_pred HHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence 9999988999999887766666655543
No 94
>PRK10054 putative transporter; Provisional
Probab=99.51 E-value=8.6e-13 Score=121.02 Aligned_cols=172 Identities=14% Similarity=0.075 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
|.++.+.+..++...+.+....++|.|+++++|+|..+.++......+++.++.++.|+++||+++|+.. .
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~--------~- 77 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYM--------L- 77 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH--------H-
Confidence 3466667777888888888999999999999999999999999998999999999999999999876321 1
Q ss_pred HhhHHHHHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 190 IGFLGPAFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.+.+...+........++....+.+. ..+.+...+ .+.......|. ++++|+.+.++.+...++|+.++|.+.+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 78 LAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVF-STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111112222332222221 111111111 11122222333 4567899999999999999999999999987
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 268 QHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 268 ~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
+ .+|+..|...+++.+++.+....
T Consensus 157 ~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 157 M-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred H-hccCcHHHHHHHHHHHHHHHHHH
Confidence 6 47999998887777776544433
No 95
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.48 E-value=3.4e-12 Score=120.51 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=110.0
Q ss_pred hhcChh-HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHH
Q 022198 106 ILSKPP-VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV 183 (301)
Q Consensus 106 ll~~~~-~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~ 183 (301)
++|+|+ ++..++..++...++|++..|+|.|+++++|+|.++++..............+++|+++|| +|||+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~----- 90 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV----- 90 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-----
Confidence 668874 7787888888888999999999999999999999998887766554555556789999999 587621
Q ss_pred HHHHHHHhhHHHHHHHHHhhcc-CChHHHHH-HHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhH
Q 022198 184 RKIMQSIGFLGPAFFLTQLSHV-DSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVF 258 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~ 258 (301)
+. .+.+..++........ +....... ....+.+.+.+ .+...+...+..| +.+..+.++.+...++|+.+
T Consensus 91 ---~~-~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~ 165 (500)
T PRK09584 91 ---IM-LGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFF 165 (500)
T ss_pred ---HH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHH
Confidence 11 1111111111111121 12212211 11122222211 1122222333333 23455677888999999999
Q ss_pred HHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198 259 GTAATGYILQHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 259 ~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~ 288 (301)
+|.+.|++.|+.||+..|.+.++..+++.+
T Consensus 166 gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 166 SMLATPWLAAKYGWSVAFALSVVGMLITVV 195 (500)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 999999999998999999887765555543
No 96
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.48 E-value=2e-12 Score=121.36 Aligned_cols=175 Identities=13% Similarity=0.139 Sum_probs=116.0
Q ss_pred hhcCh-hHHHHHHHHHhhHHHHHHHHHhHHHHHHHH--hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHH
Q 022198 106 ILSKP-PVWALIVSHFCHNWGTFILLTWMPTYYNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVT 181 (301)
Q Consensus 106 ll~~~-~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~--~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~ 181 (301)
.+++| .++.+....++...++|++..++|.|++++ +|+|..+++.+.....++..++.+++|+++|| +|||+.
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~--- 81 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT--- 81 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH---
Confidence 34555 455666677777889999999999999987 89999999999999999999999999999999 787621
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC----CchHHHHHHHhHHHhhHH
Q 022198 182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP----RYSGVLLGLSNTAGVLAG 256 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~g~a~g~~~~~~~lgg 256 (301)
+ ..+.+..++.........+.... +.....+.+.+.+ .+...+...+..| +.|+.+.++.+...++|+
T Consensus 82 -----l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~ 154 (475)
T TIGR00924 82 -----M-VLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS 154 (475)
T ss_pred -----H-HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH
Confidence 1 12222222222212222222222 2222222222211 1112222222222 247778899999999999
Q ss_pred hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 257 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 257 ~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
.++|.+.|++.++.||+..|.+.++..+++.+.+
T Consensus 155 ~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 155 FISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999998889999988776666654444
No 97
>PRK09848 glucuronide transporter; Provisional
Probab=99.47 E-value=7.7e-12 Score=116.56 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=98.4
Q ss_pred ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHH
Q 022198 102 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT 181 (301)
Q Consensus 102 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~ 181 (301)
++++++|||+++...+..++...+.+....+.|.|+++.+|.+....++......++..++.++.++++||+++|+.
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~--- 296 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT--- 296 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH---
Confidence 46779999999888877777777777777888888988889877666655554456778899999999999986521
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC--------CCchHHHHHHHhHHH
Q 022198 182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA--------PRYSGVLLGLSNTAG 252 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~g~a~g~~~~~~ 252 (301)
......+.........+....+...... ....+.+.+... +...+...|.. .+..|...|+.+...
T Consensus 297 ----~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~ 371 (448)
T PRK09848 297 ----FLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTR 371 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHH
Confidence 1111111111111111111112222111 112222222111 11222222221 234699999999999
Q ss_pred hhHHhHHHhHhhhhcccCcc
Q 022198 253 VLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 253 ~lgg~~~~~l~g~l~~~~~~ 272 (301)
++|.++++.+.|.+++..|+
T Consensus 372 klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 372 KCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998876443
No 98
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.9e-12 Score=114.47 Aligned_cols=256 Identities=17% Similarity=0.125 Sum_probs=158.6
Q ss_pred chhhhHhhccCcch-hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCC-CCCCC
Q 022198 3 AMNNILSKWVPVAE-RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA-EDPQL 80 (301)
Q Consensus 3 ~~~~~i~~~~p~~~-rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~-~~~~~ 80 (301)
+..+++++.||+++ |++++|..-...++|..+||++|+.+-+..|-+.+|.+.+++.++-..+-+. ..| |. .+++
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~-vi~-p~~~~~~- 255 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL-VIE-PTEMDPD- 255 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh-eeC-ccccCcc-
Confidence 35688999998766 6999999999999999999999999999999999999988887664333222 222 22 1111
Q ss_pred CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc-hhhhHhhhhHHHH
Q 022198 81 RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT-ESGLFCVLPWLTM 159 (301)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~-~~~~~~~~~~i~~ 159 (301)
++ .+..++.+++++|+.+......-..+...-.+-.-+|+++.|... ++. +.|+......+..
T Consensus 256 --------------~~-~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~-~p~w~~G~~fLp~~~~y 319 (464)
T KOG3764|consen 256 --------------ST-EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMF-TPGWEVGLAFLPASLSY 319 (464)
T ss_pred --------------cc-ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhcc-CCCcceeeeecccccch
Confidence 00 012356789999999876543332233333344556666777777 555 8899888888999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhh----hhcchhhhhhc
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF----SQSGLYSNHQD 235 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 235 (301)
.++..+.|.++||++.-++... ...+...+ . +.......++...++ ...++.+++.. +........-|
T Consensus 320 ~ig~~lfg~la~k~~~~~wl~~--~~gl~~~G---~--~~~~iP~~~~~~~L~-vp~~~l~~~i~~~dasl~P~l~~lvd 391 (464)
T KOG3764|consen 320 AIGTNLFGKLADKYPHLRWLLS--LGGLATVG---V--SSGPIPFATSIAQLW-VPNFGLGFGIGLADASLIPTLGYLVD 391 (464)
T ss_pred hccCchHHHHHHhcCchhHHHH--HHHHHHHH---H--HhchhHhhhhHHHHh-hhhHHHHHHHHHHHHHHhhhhHHhcc
Confidence 9999999999999974322111 00111111 1 111111111221111 11111111111 11111122112
Q ss_pred cCC-C---chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHH
Q 022198 236 IAP-R---YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLV 285 (301)
Q Consensus 236 ~~p-~---~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v 285 (301)
... + .=|...++......+|-++||.++|.+.+..|+.+...+.+...++
T Consensus 392 ~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 392 PRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred hhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence 211 1 3478888889989999999999999999998887766555555444
No 99
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.43 E-value=8.4e-17 Score=149.73 Aligned_cols=289 Identities=14% Similarity=0.101 Sum_probs=158.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 78 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~ 78 (301)
+....++.|..|+|+||+..++.+.+..+|..++..++....+ .++||..+....+++++. .+.....||+|+..-
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL~ 199 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWLL 199 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceec
Confidence 4567889999999999999999999999999988887765543 356999999866666543 344456799997421
Q ss_pred ---CCCHHHHHHHH-------h-c-cCCCCC-----CCCCChHHhhcChhH-H---HHHHHHHhhHH-HHHHHHHhHHHH
Q 022198 79 ---QLRPAEKKLIV-------S-S-CASKEP-----VKTIPWGLILSKPPV-W---ALIVSHFCHNW-GTFILLTWMPTY 136 (301)
Q Consensus 79 ---~~~~~~~~~~~-------~-~-~~~~~~-----~~~~~~~~ll~~~~~-~---~~~~~~~~~~~-~~~~~~~wlp~~ 136 (301)
+.++.++.... + + .+.+++ ..+.+++++++++.. + .......+... +.+....|.|.+
T Consensus 200 ~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i 279 (451)
T PF00083_consen 200 SKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI 279 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccc
Confidence 11111111000 0 0 000000 011346778877542 1 11222222222 333444555555
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH--HhhccCC----hHH
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT--QLSHVDS----PAM 210 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~ 210 (301)
+ +..|.+.. -.......+...++.+++.++.||+|||+...... .......+.+. .....+. ...
T Consensus 280 ~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T PF00083_consen 280 F-ENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL------LLMAICSLILGIIFFLGVSSSSWWSIL 350 (451)
T ss_pred c-cccccccc--ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence 5 45577766 22333444566678888889999999875332211 01111111110 0111111 111
Q ss_pred HHHHHHHH-HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHH
Q 022198 211 AVLCMACS-QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 211 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~ 288 (301)
.+.+.... ..+.....+..+....|..| +.|+++.++.+..+++++.++|.+...+.+..+-...+.+.+++.+++.+
T Consensus 351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i 430 (451)
T PF00083_consen 351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII 430 (451)
T ss_pred cceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence 11111111 11110111222344467766 58999999999999999999999988888875434444444444444443
Q ss_pred HHHh--hcCCcccc
Q 022198 289 VWNL--FSTGEKVV 300 (301)
Q Consensus 289 ~~~~--~~~~~~~~ 300 (301)
.... .+|+++++
T Consensus 431 ~~~~~lpET~g~~l 444 (451)
T PF00083_consen 431 FVYFFLPETKGKTL 444 (451)
T ss_pred heeEEEeeCCCCCH
Confidence 3333 37777765
No 100
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.41 E-value=6.5e-12 Score=116.02 Aligned_cols=181 Identities=16% Similarity=0.123 Sum_probs=113.4
Q ss_pred HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198 105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR 184 (301)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~ 184 (301)
+.+|+|++|...+.+++...++.....++|.|+++++|+|+.+.|+......++..++.++.|+++||+|+|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----- 79 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----- 79 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-----
Confidence 367888999988888887777778899999999999999999999999999999999999999999999976321
Q ss_pred HHHHHHhhHHHHHH-HHHhhccC--ChHHHHHHHHHHHhhhh-h-hhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHH
Q 022198 185 KIMQSIGFLGPAFF-LTQLSHVD--SPAMAVLCMACSQGTDA-F-SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG 259 (301)
Q Consensus 185 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~ 259 (301)
............ ........ .......+.......+. + ..........+..++.++...|..+..+++|..++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~ 157 (420)
T PRK09528 80 --LWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALC 157 (420)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHH
Confidence 111111100000 00000000 00011111111111111 0 00011111111123445667778888889999999
Q ss_pred HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
|.+.|.+.+. +|+..|.+.++..+++.+.+...
T Consensus 158 ~~~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 158 AFIAGILFNI-NPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHhc-CchHhHHHHHHHHHHHHHHHhcc
Confidence 9999999876 68888888776666655554443
No 101
>PRK11462 putative transporter; Provisional
Probab=99.41 E-value=6.7e-11 Score=110.66 Aligned_cols=238 Identities=10% Similarity=0.034 Sum_probs=127.5
Q ss_pred hhHhhccC-cchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------cCCchhHHhhhhhHHHHHHHHhhhccCCCCCC
Q 022198 6 NILSKWVP-VAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAED 77 (301)
Q Consensus 6 ~~i~~~~p-~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~ 77 (301)
++.+|..+ +|||++..++-+.+.++|..+++.+...+.+. .||+....+.+++.++...+.....+|+++.+
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~ 211 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP 211 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC
Confidence 56677775 89999999999999999887777665555443 36888777777766554323332233322111
Q ss_pred CCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHH---HHHHHHhHHHHHHHHhCCCcchhhhHhhh
Q 022198 78 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWG---TFILLTWMPTYYNQVLHFNLTESGLFCVL 154 (301)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~---~~~~~~wlp~~l~~~~g~s~~~~~~~~~~ 154 (301)
++ +.+ .+..++.+++||+++......++...+ ..+...+..+|. .|. ....+.+...
T Consensus 212 ----~~-----------~~~-~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~---~g~-~~~~~~~l~~ 271 (460)
T PRK11462 212 ----PT-----------TTS-MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI---LGT-PEVFVAFLTT 271 (460)
T ss_pred ----cc-----------CCC-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh---cCC-hHHHHHHHHH
Confidence 00 000 011356688898887665544444333 333444444544 332 2333445556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH-HHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhh
Q 022198 155 PWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP-AFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSN 232 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 232 (301)
..++..++.+++++++||+++|+. .......... .+..... ...+... .+.....+.+.+... ...++.
T Consensus 272 ~~i~~iig~~l~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~-~l~~~m 342 (460)
T PRK11462 272 YCVGNLIGSALAKPLTDWKCKVTI-------FWWTNALLAVISLAMFFV-PMQASITMFVFIFVIGVLHQLVT-PIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 677888999999999999986521 1111111111 1111111 1112211 111111222221111 111222
Q ss_pred hh---c---cCC--CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 233 HQ---D---IAP--RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 233 ~~---~---~~p--~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
.. | ... +..|...+......++|.++++.+.|.+++..|+
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 1 111 2346666777788999999999999998876444
No 102
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.39 E-value=2.1e-11 Score=114.42 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=135.5
Q ss_pred hhhhHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-------cCCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 4 MNNILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 4 ~~~~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-------~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
-.++..|.. +++||.+..++-....++|..+...+...+.+. .||+....+.+++.++.........+|+++
T Consensus 127 ~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~ 206 (473)
T PRK10429 127 FWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS 206 (473)
T ss_pred HHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC
Confidence 346778888 699999999987777777755554444333222 357777766666554432222222444321
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 76 EDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
.+ +.++++ +++...+..++.+++||+++...+..++.....+......+.|.+.. .-+....+.+....
T Consensus 207 ~~-~~~~~~---------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-~~~~~~~~~~~~~~ 275 (473)
T PRK10429 207 SD-NQVSAE---------GSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-IGDADLFPYYLSYA 275 (473)
T ss_pred cc-cccccc---------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-CCCHHHHHHHHHHH
Confidence 11 000000 00010112355677999988877777766666666666665444433 33455566666656
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHHHHHHHHh--hccCChHHHHHH-HHHHHhhhhhhhcchhh
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGPAFFLTQL--SHVDSPAMAVLC-MACSQGTDAFSQSGLYS 231 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (301)
.++..++.++.++++||+|+|+. .+..... +...+..... ....+....+.. ...+.+.+... ...++
T Consensus 276 ~i~~ii~~~~~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~-~~~~a 347 (473)
T PRK10429 276 GAANLVTLILFPRLVKSLSRRIL-------WAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFW-VLQVI 347 (473)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHH-------HHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 67888999999999999987621 1111111 1111111111 112222222211 11122222111 11122
Q ss_pred hhhcc--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 232 NHQDI--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 232 ~~~~~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
...|. ..|..|...+..+...+++.++++.+.|++++..|+
T Consensus 348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 123468899999999999999999999999886444
No 103
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.39 E-value=2e-10 Score=102.89 Aligned_cols=277 Identities=15% Similarity=0.166 Sum_probs=171.4
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhH---HhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF---YSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F---~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
.++++|..|+|+|++++++..+-.-+|.+++..+.+.+.+.+.=.-.. ...+.+.++...+.++ ..||++++.-+
T Consensus 111 lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w--g~E~r~~~~~~ 188 (403)
T PF03209_consen 111 LALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW--GQEPRRSRRAA 188 (403)
T ss_pred HHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCccccc
Confidence 578999999999999999999999999999999888888776522222 2223333222222222 22333221110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
++ +++++.-...|+++.++|+..+.+...+..+.+++.--.-+=+|=-+.+|+|+.|+..+......+..+
T Consensus 189 ~~---------~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~ 259 (403)
T PF03209_consen 189 AA---------ERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLL 259 (403)
T ss_pred CC---------CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00 011111123577888999888877766666667666667777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH-HHHHHHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA-MAVLCMACSQGTDAFSQSGLYSNHQDIAPRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 240 (301)
|..+.|++..|..++ +.. .+ ..+.........+.......++. +.......+++.+.++...+...+.-..+++
T Consensus 260 G~~~~g~~l~~~~~~--~~~--a~-~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~ 334 (403)
T PF03209_consen 260 GMLLAGFLLSRRLGK--KRT--AA-LGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR 334 (403)
T ss_pred HHHHHHHHhcCCCCc--hHH--HH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc
Confidence 999999887742111 111 11 11111111111111122222332 2333344455566666555444443334667
Q ss_pred hHHHHHHHhHHHhhHHhHHHhHhhhhccc----------CcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198 241 SGVLLGLSNTAGVLAGVFGTAATGYILQH----------GSWDDVFKVSVGLYLVGTAVWNLFSTGE 297 (301)
Q Consensus 241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~----------~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 297 (301)
.|+..|.=...+.++-.++..+.|.+.|. .+|..+|.+=+...++++.+...++++|
T Consensus 335 aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~~~~ 401 (403)
T PF03209_consen 335 AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRLDRRE 401 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 88988888888888888888888888773 2356677766667777777766666544
No 104
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.38 E-value=2.3e-11 Score=112.90 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=105.5
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+..++.....+.+..++|.+.+ ++|+|..+.+++.....++..++.++.|+++||+|+|+.. ....+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~---------~~~~~~ 97 (434)
T PRK11663 28 MYLGYALFYFTRKSFNAAMPEMLA-DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM---------GIGLIA 97 (434)
T ss_pred HHHHHHHHHHhhhhHHHhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH---------HHHHHH
Confidence 344444444445567788888776 5899999999999999999999999999999999876321 111111
Q ss_pred HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
..+........++....... ...+.+.+ ...+.......+..| ++|+.+.++.+....+|+.++|.+.+++.++.+|
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 11111112222233222221 11122111 111222233344444 6899999999999999999999999999998899
Q ss_pred hHHHHHHHHHHHHHHH
Q 022198 273 DDVFKVSVGLYLVGTA 288 (301)
Q Consensus 273 ~~~f~~~~~~~~v~~~ 288 (301)
+..|.+.++..++..+
T Consensus 177 ~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 177 RYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887665554433
No 105
>PRK10504 putative transporter; Provisional
Probab=99.36 E-value=7e-11 Score=110.68 Aligned_cols=171 Identities=16% Similarity=0.200 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
.+|...+..++.....+.+..++|.+.+ ++|.|+.+.++......++..++.++.|+++||+|||+. +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~--------~~-~ 80 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI--------FF-T 80 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--------HH-H
Confidence 5666677777777777788899999886 589999999998888888999999999999999997631 11 1
Q ss_pred hhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 191 GFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
.....++.........+....+.... .+.+.+.. .+.......+..| ++++.+.++.+...+++..++|.+.|.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 81 AIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 11111111111112233333222211 12222211 1112223334444 678999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHh
Q 022198 269 HGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 269 ~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
+.+|+..|.+.....+++.+....
T Consensus 160 ~~gw~~~f~~~~~~~~l~~~~~~~ 183 (471)
T PRK10504 160 YASWHWIFLINIPVGIIGAIATLM 183 (471)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 989999998876655555444333
No 106
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.1e-11 Score=103.41 Aligned_cols=265 Identities=19% Similarity=0.179 Sum_probs=154.7
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHh--hhccCCC---CCCCC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWL--SKAHSSP---AEDPQ 79 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~--~~~~~~p---~~~~~ 79 (301)
+++...||+.||-+.+.|+..+..-+|+..-..+.+++.+..| .++-....+.+...+.+ ..-+.+- .....
T Consensus 158 N~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~---~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~ 234 (459)
T KOG4686|consen 158 NKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG---RMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGL 234 (459)
T ss_pred cceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788899999999999999999888888777767777655322 11100011111000000 0000000 00000
Q ss_pred CC-HHHHHHHHhc-cCCCCCCCCCChHHhh-cChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhH
Q 022198 80 LR-PAEKKLIVSS-CASKEPVKTIPWGLIL-SKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPW 156 (301)
Q Consensus 80 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~ 156 (301)
.+ ++|+...+++ ...++|+ +.+.. -.|++|...+..++.....+-+.+--|.+.++++|+|+.+++.+.+...
T Consensus 235 ~D~rAerilh~e~g~~Ge~pk----Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy 310 (459)
T KOG4686|consen 235 SDDRAERILHLEEGFLGEEPK----LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVY 310 (459)
T ss_pred hhhHHHHHHhhhcCcccCCcc----cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence 11 1122111111 1111121 11122 2368888888777777788888999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhcc
Q 022198 157 LTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI 236 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (301)
....+..++.|.++||+|++-+ +.... ++..++. =....+ ...+|+....++.......+++ +|...+..
T Consensus 311 ~Isav~spvfg~i~Dk~G~n~~--wv~~a---~~~tl~~-H~~l~F-t~lsPy~~m~~lGLsysllAcs---lWP~va~~ 380 (459)
T KOG4686|consen 311 GISAVLSPVFGAISDKYGFNLW--WVASA---CILTLLG-HSGLFF-TFLSPYTSMTFLGLSYSLLACS---LWPCVASL 380 (459)
T ss_pred hhhhhhhhhHHHhHhhhcceeh--hHHHH---HHHHHHH-hhhHHh-hhccHHHHHHHHhhhHHHHHHH---Hhhhhhhh
Confidence 8888999999999999986521 11110 1111110 001111 2245655554444332222222 34445556
Q ss_pred CCC-chHHHHHHHhHHHhhHHhHHHhHhhhhccc-Ccch--HHH-HHHHHHHHHH
Q 022198 237 APR-YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWD--DVF-KVSVGLYLVG 286 (301)
Q Consensus 237 ~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~--~~f-~~~~~~~~v~ 286 (301)
.|+ +-|++.|..+.+.++|-++.|.+.|.++|+ +|+. -+| +.+....++.
T Consensus 381 vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 381 VPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred CCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 665 679999999999999999999999999998 4443 233 3344444443
No 107
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.34 E-value=7e-11 Score=105.63 Aligned_cols=161 Identities=19% Similarity=0.317 Sum_probs=108.5
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198 117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 196 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~ 196 (301)
+..++...........+|.++++++|.|..+.+++.....++..++.++.|+++||+|||+ .+ ..+.+..+
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--------~l-~~~~~~~~ 73 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR--------VL-IIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH--------HH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee--------eE-eehhhhhh
Confidence 3445555566667777877888899999999999999999999999999999999998762 11 12222121
Q ss_pred HH--HHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 197 FF--LTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 197 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
+. ...+. .+....+. ....+.+.+ ...+.......+..| ++|+.+.++.+....+|..++|.+.+.+.++.+|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~ 150 (352)
T PF07690_consen 74 LGSLLLAFA--SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW 150 (352)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred hHHHHhhhh--hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence 11 11111 23222221 122222221 222223334445555 5899999999999999999999999999988889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 022198 273 DDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 273 ~~~f~~~~~~~~v~~~~ 289 (301)
+..|.+.+++.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 RWAFLISAILSLIAAIL 167 (352)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhh
Confidence 99999988888887664
No 108
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.34 E-value=6.9e-11 Score=111.29 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTVRKIMQ 188 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~~~~~~ 188 (301)
|.+|..+...++..+++|++..+++.|+++++|++.++++.+.........+..+++|+++|| +|||+. +.
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~--------~~ 85 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT--------IV 85 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH--------HH
Confidence 356666777778889999999999999999999999999988877777777888899999999 887632 11
Q ss_pred HHhhHHHHHHHHHhhccCC-hHHH-HHHHHHHHhhhhhhhcchhhhhhccCC-C--chHHHHHHHhHHHhhHHhHHHhHh
Q 022198 189 SIGFLGPAFFLTQLSHVDS-PAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP-R--YSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~--~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
.+.+..++.........+ +... +.....+.+.+.+ .+...+...|..| + +++.+.++.+...++|..++|.+.
T Consensus 86 -~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~-~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 86 -LGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLF-KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred -HHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 2212 1111112222211 1222233334433 3 346778888999999999999999
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
|++.++.||+.+|.+..+..+++.+.
T Consensus 164 g~l~~~~gw~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 164 PVIADKFGYSVTYNLCGAGLIIALLV 189 (489)
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 99999989999998865545444433
No 109
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.34 E-value=8.5e-11 Score=108.02 Aligned_cols=170 Identities=16% Similarity=0.223 Sum_probs=112.5
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 022198 113 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 192 (301)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~ 192 (301)
+......++...+.+.....+|.|+++++|+|..+.|+......+...+..+++|+++||+++|+. +. .+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~--------l~-~~~ 83 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM--------IV-TGM 83 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH--------HH-HHH
Confidence 344556666777888889999999999999999999999998888888889999999999986621 11 111
Q ss_pred HHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198 193 LGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 270 (301)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~ 270 (301)
...++........++....... ...+.+.+.+ .+...+...+. ++++++.+.++.+...++|..++|.+.|++. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~ 161 (400)
T PRK11646 84 LMRAAGFATMAIAHEPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QY 161 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 1111111111222333322221 1112221111 12222333344 4578999999999999999999999999998 55
Q ss_pred cchHHHHHHHHHHHHHHHHHHhh
Q 022198 271 SWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 271 ~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+|+..|.+.+...+++.+....+
T Consensus 162 g~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 162 DFRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999988777666655443333
No 110
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=108.26 Aligned_cols=276 Identities=17% Similarity=0.110 Sum_probs=147.3
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---hcCCchhHHhhhhh----HHHHHHHHhhhccCCCCC
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---RFGWPSVFYSFGSL----GTVWFTVWLSKAHSSPAE 76 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---~~gWR~~F~~~g~l----~~~~~~~~~~~~~~~p~~ 76 (301)
+.++++|.+++|+|+++++.+++...+|-++||.+|+++.+ ..| +.+|.....+ ...-......+.||+-+.
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~ 219 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFFPWFLPETLPL 219 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 56899999999999999999999999999999999999988 222 2223221111 111011222234443221
Q ss_pred CCCCCHHHHHHHHhccCCCCCCCCCCh---HHhhcChhHHH------H-HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc
Q 022198 77 DPQLRPAEKKLIVSSCASKEPVKTIPW---GLILSKPPVWA------L-IVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 146 (301)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~------~-~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~ 146 (301)
+++. +|....++...+.+...+.++ -.++||++... . -+..+..+.-+-...+..+.|.++.+|+++.
T Consensus 220 rk~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~ 297 (451)
T KOG2615|consen 220 RKRN--DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSM 297 (451)
T ss_pred hhhc--ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChh
Confidence 1111 111100100000001111111 12455554322 1 1222333323333344455555788999999
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhh-hhhh
Q 022198 147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGT-DAFS 225 (301)
Q Consensus 147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (301)
|.|.+.+..++.+.+....-.+..||.+ +.... .......+..+++.+ ......+. .+.+......+ .+..
T Consensus 298 ~~G~vl~~tGl~m~~~ql~~~~~l~~~~--~~~~a---~l~~~l~~~vP~~ll--ls~~~~~~-~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 298 QQGKVLSTTGLLMLVIQLALVPILPRYK--GNIKA---VLLFSLLLIVPAFLL--LSLARTPV-VLYLGSTLKSFSTASV 369 (451)
T ss_pred hheeeeehhhHHHHHHHHhccccccccc--cchhh---HHHHHHHHHHHHHHH--Hhccccch-hhhHHHHHHHHHHHHh
Confidence 9999998888877777766666666653 11111 111222223333332 22333332 22222111111 2333
Q ss_pred hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHH
Q 022198 226 QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 226 ~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~ 290 (301)
.+.++...+...| +++|+.+|+....+.++=++||.+.|.+... .+-+..+...+.+.+++....
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~~~l~ 436 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIPMMLL 436 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHHHHHH
Confidence 4555666666655 5899999999999999999999999998876 333333333334444443333
No 111
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.33 E-value=4.4e-11 Score=107.57 Aligned_cols=248 Identities=17% Similarity=0.142 Sum_probs=153.2
Q ss_pred hhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh------hcCCch--hHHhhhhhHHHHHHHHhhhccCCCCCC
Q 022198 6 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGWPS--VFYSFGSLGTVWFTVWLSKAHSSPAED 77 (301)
Q Consensus 6 ~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~------~~gWR~--~F~~~g~l~~~~~~~~~~~~~~~p~~~ 77 (301)
++.+-|||++||..|..+-..+.++|.++|.++.+.+++ +..|.. .|+..+.+..+.+.+.....++.|+.+
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP 242 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP 242 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 677889999999999999999999999999988888875 346776 466555555444444444455666666
Q ss_pred CCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH
Q 022198 78 PQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL 157 (301)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i 157 (301)
|..+.+... +.+ -....+++++|+++....+.+......+|+..+.+-.-+. ..|++...+|+...+..+
T Consensus 243 ps~s~~~~~--------~~~-f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~-~sgY~~~~aG~ig~l~iv 312 (480)
T KOG2563|consen 243 PSASQAALQ--------DAS-FPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALC-PSGYEGVFAGYIGALMIV 312 (480)
T ss_pred CchhHhhhh--------cCc-HHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccc-cccCCccccchhHHHHHH
Confidence 554332111 000 0113567999999988887777666666666666543443 458888899999998899
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHHhhccCChH-HHHHHHHH-HHhhhhhhhcch-hhh-
Q 022198 158 TMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQLSHVDSPA-MAVLCMAC-SQGTDAFSQSGL-YSN- 232 (301)
Q Consensus 158 ~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-~~~- 232 (301)
++.+++.+.|.+.||..+ .+ +... +........ +........+. .++.+..+ .+++......++ +-.
T Consensus 313 ~Gmlga~~~gii~Dktk~--fk-----~~~~-v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~Elg 384 (480)
T KOG2563|consen 313 AGMLGALASGIIADKTKK--FK-----LTTL-VLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELG 384 (480)
T ss_pred HHHHHHHHHHhhhhhhhh--HH-----HHHH-HHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeee
Confidence 999999999999999742 11 1111 111111111 11111111111 11112111 122221222211 111
Q ss_pred hhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 233 HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 233 ~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
....+|..=++..|+.|..+++-+.+-..+-+.+.+..+
T Consensus 385 vE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 385 VETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred eeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 223467666777899999999999999999999888744
No 112
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.33 E-value=7.1e-11 Score=112.04 Aligned_cols=171 Identities=12% Similarity=0.090 Sum_probs=106.3
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-cCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC-
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-FGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR- 81 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~- 81 (301)
+..+++|..|++.||...+..+....+|..++..++....+. ++||..+.+..+.+++..+. +...||+|+...+..
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~ 241 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGR 241 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCC
Confidence 457899999999999999999999999999996665555433 69999998866666554444 667789886321111
Q ss_pred HHHH-HHH---Hh---------------cc--CCCCCCCCCChHHhhcChh----HHHHHHHHHhhHHHHHHHHHhHHHH
Q 022198 82 PAEK-KLI---VS---------------SC--ASKEPVKTIPWGLILSKPP----VWALIVSHFCHNWGTFILLTWMPTY 136 (301)
Q Consensus 82 ~~~~-~~~---~~---------------~~--~~~~~~~~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~ 136 (301)
.+|. +.. +. +. ..+...++..++++++... .....+..+.+..+......|.+.+
T Consensus 242 ~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 242 LEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred hHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 1111 110 00 00 0000011123555554211 2223333444445566667888888
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
+++. |.+... ........+...++..++.++.||+|||.
T Consensus 322 f~~~-g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ 360 (513)
T KOG0254|consen 322 FKSA-GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRK 360 (513)
T ss_pred HHhc-CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 7654 776543 44455566778888899999999998774
No 113
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.33 E-value=7.4e-11 Score=108.08 Aligned_cols=174 Identities=14% Similarity=0.093 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198 109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 188 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~ 188 (301)
||.+|.....+++...++.....++|.|+++++|+|+.+.+.......++..++.++.|+++||+|||+.... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~------~ 74 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW------I 74 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH------H
Confidence 5788888888888777778888999999999999999999999999999999999999999999997632110 0
Q ss_pred HHhhHHHHHHHHHhhccC---ChHHHHHHH-HHHHhhhh-hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHh
Q 022198 189 SIGFLGPAFFLTQLSHVD---SPAMAVLCM-ACSQGTDA-FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
.................. .......+. ....+... ...+..-....+..+ .++...|.....+++|..++|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR-NSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh-hcccccchhhhhcccHHHHHHHHH
Confidence 011111111111011110 001111111 11111111 111111111122222 223445666777889999999999
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
|.+.+. +|+..|.+.+.+.++..+..
T Consensus 154 g~l~~~-~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 154 GILFSI-DPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred hhhhcc-CchHHHHHHHHHHHHHHHHH
Confidence 988776 79999988777666655444
No 114
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.31 E-value=1e-10 Score=105.82 Aligned_cols=167 Identities=10% Similarity=0.034 Sum_probs=103.7
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198 117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 196 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~ 196 (301)
+.+++...+.......+|.|+++++|.|..+.++......+...+..++.|+++||+|||+ ..+. .......
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-------~~~~-~~~~~~~ 75 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK-------GLIL-FCCLLAA 75 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-------HHHH-HHHHHHH
Confidence 3455556667777888999999999999999999999888889999999999999998763 1111 1111111
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCC-CchHH--HHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 197 FFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAP-RYSGV--LLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~--a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
+........++....+.. ....+. .....+...+...+..| +.++. ..+..+....+|..++|.+.+++.++.+|
T Consensus 76 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~ 154 (375)
T TIGR00899 76 LACLLFAWNRNYFLLLVL-GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF 154 (375)
T ss_pred HHHHHHHhcchHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence 111111222333222211 111111 11111222222233333 34443 25677777889999999999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 022198 273 DDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 273 ~~~f~~~~~~~~v~~~~~~~ 292 (301)
+..|.+.+.+.++..+....
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 155 TVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999887776666554433
No 115
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.29 E-value=8.9e-11 Score=108.31 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=118.0
Q ss_pred ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHH
Q 022198 102 PWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVT 181 (301)
Q Consensus 102 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~ 181 (301)
|++.+.|+|.++..++..++...+.......+|.+.++ .+.|+.+.++......++..++.++.|+++||++||+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~ 87 (417)
T PRK10489 9 DLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL 87 (417)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence 55656678888877777777667766777888888765 57799999999999999999999999999999988753322
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHH
Q 022198 182 TVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFG 259 (301)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~ 259 (301)
.. ....+.+.... ...+....+....... ...+.+.+ ...+.......+.. +++++.+.++.+...++|..++
T Consensus 88 ~~--~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 162 (417)
T PRK10489 88 AR--GTCGLGFIGLA--LNAFLPEPSLLAIYLLGLWDGFFGS-LGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS 162 (417)
T ss_pred hH--HHHHHHHHHHH--HHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence 10 01111111110 0011112222222111 11111111 11122223333443 4678999999999999999999
Q ss_pred HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
|.+.|.+.+..+|+..|.+.+...+++.+.....
T Consensus 163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 163 PALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998789988887766666655544333
No 116
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.29 E-value=9.4e-10 Score=104.34 Aligned_cols=252 Identities=17% Similarity=0.175 Sum_probs=141.7
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHH-HhhhccCC-CCCCC-CCC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTV-WLSKAHSS-PAEDP-QLR 81 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~-~~~~~~~~-p~~~~-~~~ 81 (301)
...++|..|.|.|+...++.....-.....++.++..+...-+|||.|++..+...+.... .+.+.|++ ++.+. +.+
T Consensus 152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s 231 (599)
T PF06609_consen 152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLS 231 (599)
T ss_pred HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCc
Confidence 3458999999999988877766554444456677766666779999999876654433222 22222221 11111 111
Q ss_pred H-HHHHHH----------------H---------------------------------hc-cC-CCCCCCCCChHHhhcC
Q 022198 82 P-AEKKLI----------------V---------------------------------SS-CA-SKEPVKTIPWGLILSK 109 (301)
Q Consensus 82 ~-~~~~~~----------------~---------------------------------~~-~~-~~~~~~~~~~~~ll~~ 109 (301)
+ ++-+.. . -| .. .++| -.|+ ++||+
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~P--l~P~-~Lf~~ 308 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDP--LFPH-RLFKD 308 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCC--cCCH-HHhcc
Confidence 1 111110 0 00 00 0011 1234 48888
Q ss_pred hh-HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc---hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198 110 PP-VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT---ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 185 (301)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~---~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~ 185 (301)
++ +....+..+.....+|+...+-|+.....++-|+. +.++...+..++..+|..+.|.+..|.++ . |
T Consensus 309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~--~------K 380 (599)
T PF06609_consen 309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH--I------K 380 (599)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc--h------h
Confidence 54 55555555555556788888888988888888764 67788888888888899999998877642 1 1
Q ss_pred HHHHHhhHHHHHH--HHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHh
Q 022198 186 IMQSIGFLGPAFF--LTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTA 261 (301)
Q Consensus 186 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~ 261 (301)
+...++.+....+ .......++....+.+ ...+++++....... ...+-. +++..|++.|+..++..+||+++..
T Consensus 381 w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~-~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~a 459 (599)
T PF06609_consen 381 WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAI-VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYA 459 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHH-HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 2222222211111 1111223333332222 222333332222211 122223 3457899999999999999999988
Q ss_pred Hhhhhcc
Q 022198 262 ATGYILQ 268 (301)
Q Consensus 262 l~g~l~~ 268 (301)
+..-+..
T Consensus 460 Iy~~I~~ 466 (599)
T PF06609_consen 460 IYNAIFT 466 (599)
T ss_pred HHHHHHH
Confidence 7766554
No 117
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.28 E-value=1.3e-10 Score=106.51 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
+++....+..+....+.......+|.++++++|.|..+.++......++..++.++.|+++||+|||+..... .
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~------~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG------L 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH------H
Confidence 4555566666666667666778899999999999999999999999999999999999999999987432111 0
Q ss_pred HhhHHHHHHHHHhhccCC-----hHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhH
Q 022198 190 IGFLGPAFFLTQLSHVDS-----PAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAA 262 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l 262 (301)
+......+........++ ....+.. ...+.+.+.. .+.......+. ++++|+.+.++.+....+|..++|.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence 111111111111111111 1111111 1112221111 11122222233 45688999998888888888999999
Q ss_pred hhhhcccCcchHHHHHHHHHHHHHH
Q 022198 263 TGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 263 ~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
.+.+.++.+|+..+.+.....++..
T Consensus 168 ~~~l~~~~g~~~~~~~~~~~~~~~~ 192 (399)
T PRK05122 168 GVLLYHWGGLAGLGLLIMLLALLGL 192 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHH
Confidence 9999998889888776655544443
No 118
>PRK11043 putative transporter; Provisional
Probab=99.28 E-value=3.6e-10 Score=103.64 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhHHHH--HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198 122 HNWGTFILLTWMPTY--YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 199 (301)
Q Consensus 122 ~~~~~~~~~~wlp~~--l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
.+.+++....+.|.+ +++++|.|.++.++......++..++.++.|+++||++||+. +. .......+..
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~~~~ 85 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV--------LL-AGLSLFALGS 85 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH--------HH-HHHHHHHHHH
Confidence 344555666677766 678899999999999999999999999999999999987631 11 1111111111
Q ss_pred HHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198 200 TQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK 277 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~ 277 (301)
......++....... ...+.+.+... ....+...+.. +++++...+..+....+++.++|.+.|++.++.+|+..|.
T Consensus 86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~ 164 (401)
T PRK11043 86 LGMLWVESAAQLLVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA 164 (401)
T ss_pred HHHHHhcCHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 111122233222221 11122211111 11112233444 4556777788888888999999999999999989999998
Q ss_pred HHHHHHHHHHHHHHhh
Q 022198 278 VSVGLYLVGTAVWNLF 293 (301)
Q Consensus 278 ~~~~~~~v~~~~~~~~ 293 (301)
+.+.+.++..+....+
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 165 TLFAITLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8776666655544333
No 119
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.27 E-value=1.5e-09 Score=102.62 Aligned_cols=56 Identities=18% Similarity=0.389 Sum_probs=49.0
Q ss_pred CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhh
Q 022198 2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 57 (301)
Q Consensus 2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~ 57 (301)
|+..++++|++|+++ |.++.++++.+.++|..+|+.+++++.+.+|||+.|.+.++
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 566789999998654 56788999999999999999999999999999999998654
No 120
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.26 E-value=3.4e-10 Score=106.42 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=101.7
Q ss_pred hhcChhHHHHH---HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198 106 ILSKPPVWALI---VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 182 (301)
Q Consensus 106 ll~~~~~~~~~---~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~ 182 (301)
.++++..+... ...++.....+....++| ++++++|+|..+.++......+++.++.++.|+++||+|+|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~---- 103 (476)
T PLN00028 29 SFARPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG---- 103 (476)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH----
Confidence 34555444433 333333333444444444 4567899999999998888888999999999999999997621
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHH
Q 022198 183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
+. ...+..++.........+......+ ...+++.+... . ......+.. +++||.+.|+.+..+++|+.+++
T Consensus 104 ----~~-~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~ 176 (476)
T PLN00028 104 ----SA-FLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-S-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ 176 (476)
T ss_pred ----HH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-H-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence 11 1111122222112222333322221 22222222111 1 111223444 46899999999888888888887
Q ss_pred hHhhhhcc----c-----CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 261 AATGYILQ----H-----GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 261 ~l~g~l~~----~-----~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+.+.+.+ . .||+..|.+.+++.++..+....+
T Consensus 177 ~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 177 LLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66655432 1 479999998877776665554444
No 121
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.26 E-value=4.3e-10 Score=103.06 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=106.2
Q ss_pred hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh-HHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198 106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP-WLTMAFSANLGGWIADTLVSKGLSVTTVR 184 (301)
Q Consensus 106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~-~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~ 184 (301)
.| |.+.+..++..++...+.......+|.|+++++|.|.++.|+..... .++...+.+.+++ +||+|+|+
T Consensus 12 ~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~------- 82 (393)
T PRK15011 12 SF-DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK------- 82 (393)
T ss_pred hc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-------
Confidence 44 55556666667777777777889999999999999999999986544 4466667777777 99999763
Q ss_pred HHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-Cch--HHHHHHHhHHHhhHHhHHHh
Q 022198 185 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYS--GVLLGLSNTAGVLAGVFGTA 261 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~--g~a~g~~~~~~~lgg~~~~~ 261 (301)
+.+. ...+..++........++............+......+.......+..+ +.| +...++.+....+|..++|.
T Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~ 161 (393)
T PRK15011 83 SLIV-FCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPP 161 (393)
T ss_pred HHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhH
Confidence 2111 1111111111111122222221111111111111111111222223222 323 44557778888899999999
Q ss_pred HhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 262 ATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 262 l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.+++.|+.||+..|.+.++..++..+.+..+
T Consensus 162 i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~ 193 (393)
T PRK15011 162 LAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF 193 (393)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998899999988877776665554444
No 122
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.26 E-value=6.7e-10 Score=101.78 Aligned_cols=171 Identities=17% Similarity=0.186 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchh-----hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTES-----GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 185 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~-----~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~ 185 (301)
.+...++..++...+......++|.|+++ +|+|..+. +.......+...++.++.|+++||++||+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------- 86 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM------- 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-------
Confidence 44455566666666777778899999864 79987653 777778888999999999999999987621
Q ss_pred HHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhHHHhHh
Q 022198 186 IMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGTAAT 263 (301)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~~~~l~ 263 (301)
+. ...+..++........++....+.. ...+.+.+ + .+...+...+ .++++|+.+.++.+....+|..++|.+.
T Consensus 87 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 87 -LL-RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred -HH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111111111122222222211 11121111 1 1111222223 3456789999999999999999999999
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 264 GYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 264 g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.+.++.+|+..|.+.+++.+++.+....+
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 163 GLLADSYGLRPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998889999988877776665544443
No 123
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.26 E-value=4.1e-10 Score=101.61 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
.+|..++.++......+....++|.++++++|+|..+.+++.....++..++.++.|+++||+|||+. +. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~ 72 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT--------TT-L 72 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH--------HH-H
Confidence 34556666666666778889999988999999999999999999999999999999999999987631 11 1
Q ss_pred hhHHHHHHHHHhhccC-ChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 191 GFLGPAFFLTQLSHVD-SPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
..+..++........+ +....+.. ...+.+.+.+ ........+. ++++|+.+.++.+...++|..+++.+.+.+.
T Consensus 73 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~ 150 (366)
T TIGR00886 73 SLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSF--ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII 150 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhh--HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1111111111111222 22222211 1112221111 1112233344 4468899999888777888877777766655
Q ss_pred c----------cCcchHHH-HHHHHHHHH
Q 022198 268 Q----------HGSWDDVF-KVSVGLYLV 285 (301)
Q Consensus 268 ~----------~~~~~~~f-~~~~~~~~v 285 (301)
+ +.+|+..| ...+....+
T Consensus 151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 179 (366)
T TIGR00886 151 GSLIFGAGLPAHLAWGWAFVIVPAGILLL 179 (366)
T ss_pred HHHHhcccccccccccchhHHHHHHHHHH
Confidence 3 23688887 333444333
No 124
>PRK12382 putative transporter; Provisional
Probab=99.25 E-value=4.3e-10 Score=102.79 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198 109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 188 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~ 188 (301)
++.++...+..+....+.......+|.|+++++|.|..+.++......++..++.++.|+++||+|||+. ...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-------l~~ 86 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-------ALQ 86 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-------HHH
Confidence 3455555555555555566667888889999999999999999999999999999999999999997732 111
Q ss_pred H-HhhHHHHHHHHHhhcc-----CChHHHHH-HHHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhHHH
Q 022198 189 S-IGFLGPAFFLTQLSHV-----DSPAMAVL-CMACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
. +......+........ .+....+. -...+.+.+.. .+...+...+ .++++|+.+.+..+....++..++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence 1 1111111111000010 11111111 11112222111 1111222223 3457899999998888888999999
Q ss_pred hHhhhhcccCcchHHHHHHHHHHH
Q 022198 261 AATGYILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 261 ~l~g~l~~~~~~~~~f~~~~~~~~ 284 (301)
.+.+++.++.+|+..+.+.....+
T Consensus 166 ~~~~~l~~~~g~~~~~~~~~~~~~ 189 (392)
T PRK12382 166 PLGLLLHSHFGFAALALTTMVLPL 189 (392)
T ss_pred HHHHHHHhccChHHHHHHHHHHHH
Confidence 999999888889876665444333
No 125
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.25 E-value=7.5e-12 Score=112.57 Aligned_cols=290 Identities=14% Similarity=0.147 Sum_probs=174.1
Q ss_pred CCchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------------hcCCchhHHhhhhhHHHHHHH
Q 022198 1 MPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------------RFGWPSVFYSFGSLGTVWFTV 65 (301)
Q Consensus 1 ~p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------------~~gWR~~F~~~g~l~~~~~~~ 65 (301)
+|.+.++.+|....++||..++.+.+-..+|...|.+++..+.. ..=||..|.+ |.++.+....
T Consensus 162 YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~gl-g~vpa~~~ly 240 (538)
T KOG0252|consen 162 YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGL-GAVPALLVLY 240 (538)
T ss_pred CcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHH-HHHHHHHHHH
Confidence 58899999999999999999999999988998888877665532 1249999997 5555444334
Q ss_pred HhhhccCCCCCCC----CCCHHHH---HHHHh----cc----CCCCCCCC-CChHHhhcCh---hHHHHHHHHHhhHHHH
Q 022198 66 WLSKAHSSPAEDP----QLRPAEK---KLIVS----SC----ASKEPVKT-IPWGLILSKP---PVWALIVSHFCHNWGT 126 (301)
Q Consensus 66 ~~~~~~~~p~~~~----~~~~~~~---~~~~~----~~----~~~~~~~~-~~~~~ll~~~---~~~~~~~~~~~~~~~~ 126 (301)
+-..+||+++... +.+...+ +.... +. ..+.+... ..+.+.|.++ .+..+....|....++
T Consensus 241 ~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiaf 320 (538)
T KOG0252|consen 241 FRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAF 320 (538)
T ss_pred hhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4335666554220 1000000 00000 00 00001000 0133333333 3445566667778889
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhh-----Hhhhh----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH
Q 022198 127 FILLTWMPTYYNQVLHFNLTESGL-----FCVLP----WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 197 (301)
Q Consensus 127 ~~~~~wlp~~l~~~~g~s~~~~~~-----~~~~~----~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (301)
|+...+....++ ..|+.+++..+ ..-.. ..+.+.|..+..+++|++||+ .+...++....+
T Consensus 321 y~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk---------~iq~~GF~~~~i 390 (538)
T KOG0252|consen 321 YGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK---------YIQLMGFFIMTI 390 (538)
T ss_pred hccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH---------HHHHhhHHHHHH
Confidence 998888888776 45888876666 11111 122334666778899999965 333344444443
Q ss_pred HHHHhhccCC-h---HHHHHHHHHHHhhhhhh-hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc---
Q 022198 198 FLTQLSHVDS-P---AMAVLCMACSQGTDAFS-QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ--- 268 (301)
Q Consensus 198 ~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~--- 268 (301)
+........+ . ...+++....+.++.|. ....+....|..| +.|++.-|+....|..|+.++....+++.+
T Consensus 391 ~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~y 470 (538)
T KOG0252|consen 391 FFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNY 470 (538)
T ss_pred HHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccC
Confidence 3333322222 1 11222322222222222 1222333456666 689999999999999999999999999999
Q ss_pred --cCcchHHHHHHHHHHHHHHHHHHhh-cCCccccC
Q 022198 269 --HGSWDDVFKVSVGLYLVGTAVWNLF-STGEKVVD 301 (301)
Q Consensus 269 --~~~~~~~f~~~~~~~~v~~~~~~~~-~~~~~~~~ 301 (301)
..+...+|++.+.+.+++.+.-.++ +|.+|++|
T Consensus 471 p~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~le 506 (538)
T KOG0252|consen 471 PPNIGVRNVFIILAGCMLLGILFTLLIPETKGKSLE 506 (538)
T ss_pred CccccchHHHHHHHHHHHHhHheeEEeecccccCHH
Confidence 4678889999988888886554444 56666543
No 126
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=7.2e-11 Score=105.55 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=107.7
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 210 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (301)
+..-+++.++.|+|.+|.|.+.+...+...++..+.|.++||...|. ++..+++.+++....++.+++...
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~---------fm~~gLilsai~nil~Gfs~s~~~ 119 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY---------FMAFGLILSAIVNILFGFSPSLFL 119 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce---------eehHHHHHHHHHHHHHhhhhHHHH
Confidence 34444566787899999999999999999999999999999986552 234555566666555555543322
Q ss_pred HHHHHHHHHhhhhhhhcchhhh-hhccCCCchHHHHHHHhHHHhhHHhHHHhHh--hhhcccCcchHHHHHHHHHHHHHH
Q 022198 211 AVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAAT--GYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~--g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
...+.....-++....++.... .+-.++++||+..++=|+.-|+||++.|.++ +++.++++|+..|++.+++.++..
T Consensus 120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 2222222111122222222222 2344567899999999999999999999999 999999999999999877666554
Q ss_pred HHHHhhcCC
Q 022198 288 AVWNLFSTG 296 (301)
Q Consensus 288 ~~~~~~~~~ 296 (301)
+......++
T Consensus 200 l~~~~~~rd 208 (448)
T COG2271 200 LILLFLLRD 208 (448)
T ss_pred HHHHHHhCC
Confidence 444444333
No 127
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.23 E-value=1.9e-10 Score=107.78 Aligned_cols=257 Identities=8% Similarity=-0.035 Sum_probs=133.7
Q ss_pred chhhhHhhccCcchhHH---HHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCC-CCCC
Q 022198 3 AMNNILSKWVPVAERSR---SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSP-AEDP 78 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~---a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p-~~~~ 78 (301)
++.++..|..+ |++.. ..+......++|.++|+.+++.+.+.+|||.+|++.+.+.++.... ....+|++ +..+
T Consensus 140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~~~~~~ 217 (468)
T TIGR00788 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERRAFVRP 217 (468)
T ss_pred hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhcccccccccc
Confidence 45678888888 44433 3444444556899999999999999999999999987777654222 22344432 1111
Q ss_pred CCCHHHHH--HHHhccC-CCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 79 QLRPAEKK--LIVSSCA-SKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 79 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
+.++++.. ....... ++......+.++.+++|..+...+..++......+...-+-.+.++..|+|+.+.|......
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~ 297 (468)
T TIGR00788 218 RIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVG 297 (468)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHH
Confidence 11110000 0000000 00000001234567888887754443331111111110000133457899999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH---hh-c------cCChHHHHHH-HHHHHhhhhh
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ---LS-H------VDSPAMAVLC-MACSQGTDAF 224 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~------~~~~~~~~~~-~~~~~~~~~~ 224 (301)
.++..++..+.+++.+|++.| +.+. +..+..++.... .. . ..+....... ..-..+.+ +
T Consensus 298 ~v~~i~g~~~~~~~~~~~~~r--------~~l~-~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g-~ 367 (468)
T TIGR00788 298 NLGSLCGVGGYDRFLKTFPYR--------LLFG-VTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ-L 367 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCHH--------HHHH-HHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH-H
Confidence 777777777766666555433 2221 222211111100 00 0 0111111111 11111111 1
Q ss_pred hhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 225 SQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 225 ~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
..........+. +++..|+..++.+...++|+.+++.+.|.+.++.|
T Consensus 368 ~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 368 KFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112223333344 45688999999999999999999999999988755
No 128
>PRK03699 putative transporter; Provisional
Probab=99.23 E-value=1.5e-09 Score=99.36 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=103.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
-.+...+..++.......+...+|.+. +++|+|.++.++......++..++.++.|+++||++||+. +. .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~-~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~--------~~-~ 77 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMVMGPIA-EYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ--------LI-F 77 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HH-H
Confidence 344444444444444555667788754 6789999999999998999999999999999999997631 11 1
Q ss_pred hhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 191 GFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
..+..++........++....+.. ...+.+.+. ..+.......+..| +.|+.+.+..+....+++.++|.+.+.+.+
T Consensus 78 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 78 GFALMILAVAGLMFSHSLALFSIAMFVLGVVSGI-TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHh-hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111111222333222221 111222211 11112223334444 578999888888888899999999998876
Q ss_pred c-CcchHHHHHHHHHHHHHHHH
Q 022198 269 H-GSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 269 ~-~~~~~~f~~~~~~~~v~~~~ 289 (301)
. .+|+..|.+.+++.++..+.
T Consensus 157 ~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 157 RSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 4 68999998877666554433
No 129
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.23 E-value=1e-09 Score=98.39 Aligned_cols=273 Identities=18% Similarity=0.159 Sum_probs=163.4
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHH---HHhhhcCCchhHH-----------hhhhhHHHHHH-H---H
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSP---FLIHRFGWPSVFY-----------SFGSLGTVWFT-V---W 66 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~---~l~~~~gWR~~F~-----------~~g~l~~~~~~-~---~ 66 (301)
++++.+..++++-+|..+.-....++|+.+.....- ...+.-+|.-.++ +.+.++.+|.. + .
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 467888999999999988877777888777655431 1122233433310 01222222211 1 1
Q ss_pred hhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcc
Q 022198 67 LSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLT 146 (301)
Q Consensus 67 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~ 146 (301)
+...+|.++. +.++.+.....- ++ -...++++.+++......+..+..+=+..+..+....|-.+++|+|..
T Consensus 217 ~~~v~~~~~~----~~~~~~~l~~g~--k~--L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~ 288 (438)
T COG2270 217 ILNVHDAEKI----SSPPPTALRNGF--KE--LKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSST 288 (438)
T ss_pred Hhcccccccc----cccchHHHHHHH--HH--HHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHH
Confidence 1122222211 111111110000 00 012356777777777777777766668888889998999999999999
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhh-h
Q 022198 147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAF-S 225 (301)
Q Consensus 147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 225 (301)
|..++.....+.+.+|.+++|++.||++.|++. ....++....++..+.........+.-+..+...+.. +
T Consensus 289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl--------~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVL--------MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee--------hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHH
Confidence 999999999999999999999999999876322 1111222222322221211121222212222222221 1
Q ss_pred hcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhhc
Q 022198 226 QSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFS 294 (301)
Q Consensus 226 ~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~~ 294 (301)
.+..+ ..+..+|++.+...|+.+..++..+.++|.+.+.+.+. ++.+.++....++.+++.+.+...+
T Consensus 361 ~SRSy-~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 361 SSRSY-LARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred HHHHH-HHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence 12111 12334556789999999999999999999999999887 6677788878888888877765553
No 130
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.23 E-value=9.3e-10 Score=101.54 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=104.9
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+.+++...-......-.| .+++++|+|..+.++......++..++.+..|+++||+|||+ .+. ...+.
T Consensus 13 ~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~--------~~~-~~~~~ 82 (412)
T TIGR02332 13 LFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR--------WIA-GIMVL 82 (412)
T ss_pred HHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH--------HHH-HHHHH
Confidence 33444443333444444455 788899999999999999999999999999999999999763 111 11211
Q ss_pred HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc----
Q 022198 195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ---- 268 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~---- 268 (301)
..+........++....... ...+.+.+.. .+.......|..| ++|+.+.++.+....+|..+++.+.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 11111112223333322221 2222222222 1222233445544 689999999999999999999999998874
Q ss_pred --cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 269 --HGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 269 --~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
..||+..|.+.++..++.++.+..+
T Consensus 162 ~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 162 MALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 2589999998766665544444343
No 131
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.23 E-value=8.1e-10 Score=101.06 Aligned_cols=162 Identities=11% Similarity=-0.006 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 200 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (301)
+...........+|.+. +++|.|+.+.++......++..++.++.|+++||+|||+. +. ......++...
T Consensus 19 ~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~--------~~-~~~~~~~~~~~ 88 (394)
T PRK11652 19 VGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV--------IL-VGMSIFILGTL 88 (394)
T ss_pred HHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH--------HH-HHHHHHHHHHH
Confidence 33333344445566555 6789999999999999999999999999999999987631 11 11111111111
Q ss_pred HhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHH
Q 022198 201 QLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKV 278 (301)
Q Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~ 278 (301)
.....++....+.. ...+.+.+... ........+.. +++++.+.+..+....++..++|.+.+.+.++.+|+..|.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~ 167 (394)
T PRK11652 89 VALFAHSLTVLIAASAIQGLGTGVGG-VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF 167 (394)
T ss_pred HHHHHccHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 11122233222211 11122211111 11111223333 35678888888888888999999999999988889999988
Q ss_pred HHHHHHHHHHHHHhh
Q 022198 279 SVGLYLVGTAVWNLF 293 (301)
Q Consensus 279 ~~~~~~v~~~~~~~~ 293 (301)
.++..++..+....+
T Consensus 168 ~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 168 LLLLGAGVTFSMARW 182 (394)
T ss_pred HHHHHHHHHHHHHHh
Confidence 766655544433333
No 132
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.8e-09 Score=99.14 Aligned_cols=245 Identities=16% Similarity=0.123 Sum_probs=148.0
Q ss_pred hHhhcc-CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh-------hcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC
Q 022198 7 ILSKWV-PVAERSRSLALVYSGMYLGSVTGLAFSPFLIH-------RFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP 78 (301)
Q Consensus 7 ~i~~~~-p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~-------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~ 78 (301)
+.++.. .+|||.+..++-+...++|..+...+.+.++. ..||+..-.+.++++.+....-++..+|++.+..
T Consensus 136 l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~ 215 (467)
T COG2211 136 LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQ 215 (467)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccc
Confidence 334444 68999999999999999997776555444432 4689998888888887654444444555443211
Q ss_pred CCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198 79 QLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLT 158 (301)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~ 158 (301)
..++ +.+...+.++..++|||++....+.+++...+.....+-+.-|.+...|.+..+..+.......+
T Consensus 216 ~~~~-----------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~ 284 (467)
T COG2211 216 PTKT-----------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAG 284 (467)
T ss_pred cCcc-----------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHH
Confidence 0000 00010111344688999998888777777666666677777788777777777777777666667
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--HHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhc
Q 022198 159 MAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--LTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 159 ~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 235 (301)
..++.++.-++++|+|+|+. .. .+.+..++. ...+...++..+.+.. .....+.+ ...+-.++...|
T Consensus 285 ~l~~~~~~p~L~~~~gkk~~--------~~-~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d 354 (467)
T COG2211 285 LLIGLILWPRLVKKFGKKKL--------FL-IGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG-IANPLPWAMVAD 354 (467)
T ss_pred HHHHHHhHHHHHHHhchHHH--------HH-HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh-ccccccHHHhcc
Confidence 77779999999999987621 11 111111111 1111122222222222 11122222 111223343332
Q ss_pred c--------CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcc
Q 022198 236 I--------APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSW 272 (301)
Q Consensus 236 ~--------~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~ 272 (301)
. ..|..|...+.+..+..+|.+++..+.|+.++..|+
T Consensus 355 ~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 355 TVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2 123469999999999999999999999999886443
No 133
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.21 E-value=9e-10 Score=101.20 Aligned_cols=160 Identities=12% Similarity=0.045 Sum_probs=98.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
.....++..++...+.+....++|.+++ ++|+|.++.++......++..++.++.|+++||++||+. .....
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-------l~~~~ 85 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLK-ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-------MMIGL 85 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHH-HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-------HHHHH
Confidence 4445566666666676777789999885 679999999999999999999999999999999987631 11111
Q ss_pred hhHHHH-HHHHHhhcc-CChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHH-hHHHhHhhh
Q 022198 191 GFLGPA-FFLTQLSHV-DSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAG-VFGTAATGY 265 (301)
Q Consensus 191 ~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg-~~~~~l~g~ 265 (301)
...... +........ .+....... ...+.+..... ........+ .++++|+.+.|+.+....+|. .++|.+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 86 LLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA-YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 111111111 223222211 11122221111 111122223 356789999999999888886 578999999
Q ss_pred hcccCcchHHHHHH
Q 022198 266 ILQHGSWDDVFKVS 279 (301)
Q Consensus 266 l~~~~~~~~~f~~~ 279 (301)
+.++.|+...++..
T Consensus 165 l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 165 AIPAFGEMNTLWSA 178 (402)
T ss_pred cccccchHHHHHHH
Confidence 99887765544443
No 134
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.20 E-value=9.1e-10 Score=99.90 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=100.3
Q ss_pred HHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198 124 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 203 (301)
Q Consensus 124 ~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
.+.......+|. +++++|.|..+.++......++..++.++.|+++||++||+ .+. .+....++......
T Consensus 19 ~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~--------~~~-~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 19 LGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP--------VLL-LGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH--------HHH-HHHHHHHHHHHHHH
Confidence 344444445555 55678999999999999999999999999999999998662 111 11111111111111
Q ss_pred ccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHH
Q 022198 204 HVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVG 281 (301)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~ 281 (301)
..++....... ...+.+.+.. .+...+...|.. +++|+.+.++.+....+++.++|.+.+++.++.+|+..|.+.++
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 167 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL 167 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 22233222221 1112211111 122223334544 46789999999999999999999999999998889999988777
Q ss_pred HHHHHHHHHHhh
Q 022198 282 LYLVGTAVWNLF 293 (301)
Q Consensus 282 ~~~v~~~~~~~~ 293 (301)
..+++.+.....
T Consensus 168 ~~~~~~~~~~~~ 179 (385)
T TIGR00710 168 AGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHh
Confidence 666665544333
No 135
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.20 E-value=7.4e-10 Score=99.40 Aligned_cols=166 Identities=13% Similarity=0.019 Sum_probs=104.6
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-HHH
Q 022198 117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF-LGP 195 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~-~~~ 195 (301)
...++...+......-+|.|..+ .|.|..+.++......++..++.++.|+++||+|||+.. ...... ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-------~~~~~~~~~~ 77 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-------IGADLIRAVL 77 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-------HHHHHHHHHH
Confidence 34444455555566677787764 699999999999999999999999999999999976321 111111 011
Q ss_pred HHHHHHhhcc--CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 196 AFFLTQLSHV--DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 196 ~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
.+........ .+....... ...+.+.+ ...+...+...|..| ++|+.+.++.+....+|..++|.+.+++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 78 VAVLPFVALLGGLNIWQVYVLAGILAIAQA-FFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111111111 122222211 11122221 112223344455554 689999999999999999999999999999888
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 022198 272 WDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 272 ~~~~f~~~~~~~~v~~~~~~ 291 (301)
|+..|.+.++..+++.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 157 IKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998887666665544433
No 136
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.20 E-value=1.1e-09 Score=99.60 Aligned_cols=158 Identities=12% Similarity=0.046 Sum_probs=99.4
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
+..+...+|. +++++|+|.++.++......+++.++.+..|+++||+|||. .... .+.............
T Consensus 7 ~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~--------~~~~-~~~~~~~~~~~~~~~ 76 (368)
T TIGR00903 7 WVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW--------FLFG-SLATFAAAAGRLLDP 76 (368)
T ss_pred HHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------HHHH-HHHHHHHHHHHHHHh
Confidence 3444455655 45688999999999999999999999999999999998652 1111 111111111001111
Q ss_pred CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198 206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~ 284 (301)
.+....+.+ ...+.+.+... ..........++++|+.+.++.+....+|+.+++.+.+++.++.||+..|.+.+++.+
T Consensus 77 ~~~~~l~~~R~l~G~g~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~ 155 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPFLL-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA 155 (368)
T ss_pred ccHHHHHHHHHHHHhHhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 222222221 11222222111 1111122334567899999999999999999999999999998899999988777666
Q ss_pred HHHHHHHhhc
Q 022198 285 VGTAVWNLFS 294 (301)
Q Consensus 285 v~~~~~~~~~ 294 (301)
+..+.+....
T Consensus 156 ~~~~~~~~~l 165 (368)
T TIGR00903 156 AGIILVLAAL 165 (368)
T ss_pred HHHHHHHHHc
Confidence 6555444443
No 137
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.20 E-value=1.5e-09 Score=98.96 Aligned_cols=166 Identities=8% Similarity=0.034 Sum_probs=103.0
Q ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 022198 113 WALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGF 192 (301)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~ 192 (301)
...++.+++..+..+......|. +++++|+|..+.++......++..++.++.|+++||+|||+ .+. ...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~--------~~~-~~~ 84 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFLVALVLAE-VAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL--------PMV-TSI 84 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------HHH-HHH
Confidence 34455555555555556666665 56788999999999999999999999999999999999762 111 111
Q ss_pred HHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC
Q 022198 193 LGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG 270 (301)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~ 270 (301)
+..++........++....... ...+.+.+.. .+...+...|. ++++|+.+.++.+....+|..+++.+.+.+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGE-YGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhh-hHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111111122233222211 1112222111 11122233344 4578999999999999999999999999988874
Q ss_pred c--chHHHHHHHHHHHHHHHH
Q 022198 271 S--WDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 271 ~--~~~~f~~~~~~~~v~~~~ 289 (301)
+ |+..|.+.+...+++.+.
T Consensus 164 ~~~w~~~f~~~~~~~~~~~~~ 184 (405)
T TIGR00891 164 GDGWRALFFISILPIIFALWL 184 (405)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 4 998888765555554433
No 138
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.19 E-value=1.1e-09 Score=100.97 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=94.1
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-H
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-M 215 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 215 (301)
+.+++|.|..+++.......++..++.++.|+++||+|||+. +. .+.....+........++....+.. .
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~--------l~-~~~~~~~~~~~~~~~a~~~~~l~~~r~ 112 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV--------LI-TGALIFTLACAATLFTTSMTQFLIARF 112 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH--------HH-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567889999999999999999999999999999999997631 11 1111111111112223344333222 1
Q ss_pred HHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 216 ACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
..+.+.+.. ....+....|..| ++++.+.++.+....++..++|.+.+.+.++.+|+..|.+.++..+++.+.
T Consensus 113 l~Gi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 113 IQGTSICFI-ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 122222111 1112333445555 567888999999999999999999999988888999999887777766544
No 139
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.19 E-value=6.6e-09 Score=96.90 Aligned_cols=283 Identities=16% Similarity=0.088 Sum_probs=144.9
Q ss_pred CchhhhHhhccCcchh--HHHHHHHHhhhhhhHHHHhhhHHHH--hhhc-------------CCchhHHhhhhhHHHHHH
Q 022198 2 PAMNNILSKWVPVAER--SRSLALVYSGMYLGSVTGLAFSPFL--IHRF-------------GWPSVFYSFGSLGTVWFT 64 (301)
Q Consensus 2 p~~~~~i~~~~p~~~r--g~a~~~~~~g~~lG~~~g~~l~~~l--~~~~-------------gWR~~F~~~g~l~~~~~~ 64 (301)
++..++++|.+|+++| +++.++.+....+|.++|+.+++.. .+.+ +=|..|++.+++-++...
T Consensus 133 ~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l 212 (477)
T TIGR01301 133 GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTY 212 (477)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 3456889999998866 6899999999999999999998865 2322 447889885554444333
Q ss_pred HHhhhccCCCCCCCCCC-HHHHHHHHhccCCCCCCCCCChHHhh----cC-hhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 022198 65 VWLSKAHSSPAEDPQLR-PAEKKLIVSSCASKEPVKTIPWGLIL----SK-PPVWALIVSHFCHNWGTFILLTWMPTYYN 138 (301)
Q Consensus 65 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll----~~-~~~~~~~~~~~~~~~~~~~~~~wlp~~l~ 138 (301)
+.....+|+|..+++-. ++|. ++ .++...+..+++++ +- |.+|.+.+..++.=.+++.+..|...|..
T Consensus 213 ~t~~~v~E~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg 286 (477)
T TIGR01301 213 IALSAVKENPLIGSDDFINSEA----AP--PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMG 286 (477)
T ss_pred HHeeeeeccCCCccccchhhhc----cc--ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33444566543211100 0110 00 00000011233333 33 46777888888776788888888888877
Q ss_pred H-HhCCCcchh---------hhHh-hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH-hhccC
Q 022198 139 Q-VLHFNLTES---------GLFC-VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ-LSHVD 206 (301)
Q Consensus 139 ~-~~g~s~~~~---------~~~~-~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 206 (301)
+ .++-++.+. |.+. ....+...+.+++--++.+|+|+|+ +.+.....+...++.... .....
T Consensus 287 ~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k------~~~~~s~~~~~~~l~~~~~i~~~~ 360 (477)
T TIGR01301 287 REVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK------RLWGIVNIILAICLAATVLVTYVA 360 (477)
T ss_pred HHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 455443222 2221 1112222233333344455554221 111111111111111111 11100
Q ss_pred ---------------C---hHHHHH-HHHHHHhhhhhhhcchhhhhhccCC---CchHHHHHHHhHHHhhHHhHHHhHhh
Q 022198 207 ---------------S---PAMAVL-CMACSQGTDAFSQSGLYSNHQDIAP---RYSGVLLGLSNTAGVLAGVFGTAATG 264 (301)
Q Consensus 207 ---------------~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p---~~~g~a~g~~~~~~~lgg~~~~~l~g 264 (301)
+ ....+. +...+..... ..+.-|+...+..+ +..|.-.|+.|....+...+.....|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g 439 (477)
T TIGR01301 361 KNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG 439 (477)
T ss_pred hccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 0 111221 1112222111 12223443333333 45699999999998888888887777
Q ss_pred hhccc--CcchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198 265 YILQH--GSWDDVFKVSVGLYLVGTAVWNLFSTGE 297 (301)
Q Consensus 265 ~l~~~--~~~~~~f~~~~~~~~v~~~~~~~~~~~~ 297 (301)
.+.+. ++-...+.+.++..+++++.....-.+.
T Consensus 440 ~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~ 474 (477)
T TIGR01301 440 PWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP 474 (477)
T ss_pred HHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence 74443 2345677777777777766555544443
No 140
>PRK03545 putative arabinose transporter; Provisional
Probab=99.19 E-value=1.3e-09 Score=99.64 Aligned_cols=156 Identities=15% Similarity=0.049 Sum_probs=99.6
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
.+.....+|. +++++|.|.++.++......++..++.+..|+++||+|||+ .+. ......++........
T Consensus 25 ~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~--------~~~-~~~~~~~~~~~~~~~~ 94 (390)
T PRK03545 25 EFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK--------LLI-GLFVLFIASHVLSALA 94 (390)
T ss_pred HHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--------HHH-HHHHHHHHHHHHHHHh
Confidence 3333344565 56689999999999999888999999999999999999762 111 1111111111112223
Q ss_pred CChHHHHHHH-HHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198 206 DSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 283 (301)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~ 283 (301)
++.......- ..+.+.+.+ .+...+...+. ++++|+.+.|+.+....++..++|.+.+.+.++.||+..|.+.+++.
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIF-WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 3433332221 112211111 11122233344 45689999999999999999999999999998889999999887777
Q ss_pred HHHHHHHHh
Q 022198 284 LVGTAVWNL 292 (301)
Q Consensus 284 ~v~~~~~~~ 292 (301)
++..+....
T Consensus 174 ~l~~~~~~~ 182 (390)
T PRK03545 174 LITLLLLIK 182 (390)
T ss_pred HHHHHHHHH
Confidence 666544333
No 141
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.18 E-value=1.6e-09 Score=98.82 Aligned_cols=169 Identities=12% Similarity=0.053 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
+..+...+..++.....+.....+|.+ ++++|+|.++.++......++..++.++.|+++||++||+ .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~--------~~~- 72 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH--------ILL- 72 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH--------HHH-
Confidence 345555566666666666777778775 5678999999999999999999999999999999998763 111
Q ss_pred HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.+....++........++....... ...+.+.+... +.......+..+ ++++.+.+.......++..++|.+.+++.
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 73 FLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 1222222222222233344332222 11222222111 111122334444 56788888888888899999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHH
Q 022198 268 QHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 268 ~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
+..+|+..|.+.++..++..+.
T Consensus 152 ~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 152 QEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred hhccHHHHHHHHHHHHHHHHHH
Confidence 8888999998877666655443
No 142
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.16 E-value=2.1e-08 Score=95.34 Aligned_cols=251 Identities=12% Similarity=0.060 Sum_probs=132.1
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCC---C
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP---Q 79 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~---~ 79 (301)
.+..+++|++++|+|+.++.+ ......++..+++.++++.+ +||+.+++..+++.+..++ ....+|+|+... +
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~ 266 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR 266 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence 456788999999999999999 77778888888988888888 8999999988887665333 233458886321 1
Q ss_pred CCHHHHHHHH--h----------------ccCCCC---CCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 022198 80 LRPAEKKLIV--S----------------SCASKE---PVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN 138 (301)
Q Consensus 80 ~~~~~~~~~~--~----------------~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~ 138 (301)
.++.++.... + ...+++ ..++..+.++++.|++....+.... .+-.+....+.-.+..
T Consensus 267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~y~gl~~~~ 345 (521)
T KOG0255|consen 267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLF-IWFVFSLVYYGLSLNV 345 (521)
T ss_pred hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHH-HHHHHhHHHHhhhhhh
Confidence 1111110000 0 000000 0011335667888765443322222 2222333344333344
Q ss_pred HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHHHHHHH
Q 022198 139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAVLCMAC 217 (301)
Q Consensus 139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 217 (301)
+..|-+..-.... ....-.......+...||.|||.. ......+...+........ .............
T Consensus 346 ~~lg~~~~~~~~~---~~~~~~p~~~~~~~~~~~~gR~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (521)
T KOG0255|consen 346 SGLGGNIYLNFTL---SGLVELPAYFRNGLLLPEFGRRPP-------LFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLL 415 (521)
T ss_pred hhcCchHHHHHHH---HHHHHhhHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 4444444322222 222444555666788898865521 1111111111111111111 1111011111111
Q ss_pred HHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 218 SQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
+.+....+....+....|..|. .|..+.+..+..++++++++|.+.-....
T Consensus 416 ~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 416 GKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111112222234455677775 79999999999999999999988744433
No 143
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.16 E-value=1.3e-08 Score=93.33 Aligned_cols=180 Identities=14% Similarity=0.144 Sum_probs=99.7
Q ss_pred HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Q 022198 104 GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTV 183 (301)
Q Consensus 104 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~ 183 (301)
.+++|+|++....+..++.....-...++.+.|+++.-|.+....+....+..++=++.....+++..|++.|
T Consensus 201 ~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~------- 273 (400)
T PF03825_consen 201 LKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIK------- 273 (400)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-------
Confidence 4699999998877777766666777889999999876447777777655543333334444445555554432
Q ss_pred HHHHHHHhhHHHHHHHHHhhcc-CChHHHHHHHHH-----HHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHH-hhH
Q 022198 184 RKIMQSIGFLGPAFFLTQLSHV-DSPAMAVLCMAC-----SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAG-VLA 255 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~-~lg 255 (301)
+ +..++.+..++=....... ++.......... +..++.+-.. ...+..+. +++.++++.++.+... .+|
T Consensus 274 -~-ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a-~~~yi~~~~p~~~~at~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 274 -W-LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAA-SVRYIDRIAPPELRATAQGLYSALSFGLG 350 (400)
T ss_pred -H-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHhCCccchHHHHHHHHHHHhhHH
Confidence 2 2222222222211112222 222222211111 2222222111 12233344 4568899999877654 589
Q ss_pred HhHHHhHhhhhcccCcc------hHHHHHHHHHHHHHHHHHHhh
Q 022198 256 GVFGTAATGYILQHGSW------DDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 256 g~~~~~l~g~l~~~~~~------~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.+|..+.|++.|+.|. ...+.+.+++.++..+.+.++
T Consensus 351 ~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 351 GAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998543 345555555555555444444
No 144
>TIGR00895 2A0115 benzoate transport.
Probab=99.16 E-value=1.9e-09 Score=97.93 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=96.1
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
.+......|. +.+++|+|..+.+++.....++..++.++.|+++||++||+. +. .+.....+........
T Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~--------~~-~~~~~~~~~~~~~~~~ 102 (398)
T TIGR00895 33 LAAMGFAAPA-ISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV--------LL-WSILLFSVFTLLCALA 102 (398)
T ss_pred HHHHHhhHHH-HhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH--------HH-HHHHHHHHHHHHHHHc
Confidence 3344455555 456789999999999998899999999999999999987621 11 1111111111111222
Q ss_pred CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198 206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 283 (301)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~ 283 (301)
.+....+.. ...+.+.+ ...+...+...|..| ++|+.+.++.+....+|+.++|.+.+++.++.+|+..|.+.++..
T Consensus 103 ~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 103 TNVTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred cchHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 233222221 11122211 111223334445555 678999999999999999999999999999888998888765444
Q ss_pred HHHHHH
Q 022198 284 LVGTAV 289 (301)
Q Consensus 284 ~v~~~~ 289 (301)
++..+.
T Consensus 182 ~~~~~~ 187 (398)
T TIGR00895 182 LLLLLL 187 (398)
T ss_pred HHHHHH
Confidence 444333
No 145
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.16 E-value=3.7e-09 Score=96.63 Aligned_cols=170 Identities=14% Similarity=0.053 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
|.........+....+.......+|.+. +++|.|..+.+.......++..++.++.|+++||+|||+ .+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~--------~l~- 72 (392)
T PRK10473 3 RFLLCSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP--------VAI- 72 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH--------HHH-
Confidence 3444444445555555556666777765 568999999999998888999999999999999998762 111
Q ss_pred HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.+.+..++........++....+.. ...+.+.+.. .........+. ++++|+.+.+..+....+++.++|.+.+.+.
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 73 PGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111222233222211 1112221111 11122333444 4578999999999999999999999999988
Q ss_pred ccCcchHHHHHHHHHHHHHHHHH
Q 022198 268 QHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 268 ~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+..+|+..|.+.+.+.+++.+..
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHH
Confidence 88889999888776666655443
No 146
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.15 E-value=9.4e-10 Score=102.26 Aligned_cols=174 Identities=10% Similarity=-0.011 Sum_probs=100.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
.++...+.+.+.....+.+..++| ++++ +|+|+++.++......++..++.++.|+++||+++|+..... .+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~------~~ 99 (438)
T TIGR00712 28 VFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG------LI 99 (438)
T ss_pred HHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHH------HH
Confidence 333333433333333444566676 4555 599999999999999999999999999999999876432111 01
Q ss_pred hhHHHHHHHHHhhc-cCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 191 GFLGPAFFLTQLSH-VDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 191 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
......+....... ..+...... ....+.+.+.. .+.......+.. +++|+.+.++.+...++++.++|.+.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~-~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG-WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 11111111110111 111111111 11112111111 111122223444 578999999999999999999998888765
Q ss_pred c-cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 268 Q-HGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 268 ~-~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+ +.+|+..|.+.+++.++..+....+
T Consensus 179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 179 AWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5 4689999998777776655444333
No 147
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.15 E-value=8.2e-10 Score=99.49 Aligned_cols=156 Identities=15% Similarity=0.133 Sum_probs=97.8
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
.|....+.|. +++++|+|..+.++......++..++.+..|+++||+|||+.... .....++........
T Consensus 19 ~~~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~---------~~~~~~~~~~~~~~~ 88 (377)
T TIGR00890 19 VYTWTLLAPP-LGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML---------GGILYGLGFTFYAIA 88 (377)
T ss_pred HhhhhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH---------hHHHHHHHHHHHHHH
Confidence 4455556654 666889999999999999999999999999999999998743211 111111111111112
Q ss_pred CChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198 206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~ 284 (301)
++....... ...+.+.+.. .........+..|++|+.+.++.+....+|..+++.+.+.+.+..+|+..|.+.+++.+
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIA-YGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL 167 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHH-HHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 1122222211 11122233344577899999998888888888877778888787889999988777766
Q ss_pred HHHHHHHh
Q 022198 285 VGTAVWNL 292 (301)
Q Consensus 285 v~~~~~~~ 292 (301)
+..+....
T Consensus 168 ~~~~~~~~ 175 (377)
T TIGR00890 168 LVIVLGAF 175 (377)
T ss_pred HHHHHHHH
Confidence 65544433
No 148
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.15 E-value=5.9e-09 Score=98.52 Aligned_cols=167 Identities=17% Similarity=0.128 Sum_probs=106.2
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+..++...-.-.+.+-+|++. +++|.|..+.++......++...+.+..|+++||+|||+. +. .+...
T Consensus 11 ~~~~~~~~~ld~tiv~~a~p~i~-~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~--------l~-~~~~~ 80 (495)
T PRK14995 11 IVLVYIPVAIDATVLHVAAPTLS-MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL--------LM-LGGTL 80 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--------HH-HHHHH
Confidence 34444444444445666688875 5789999999999998999999999999999999987631 11 11111
Q ss_pred HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhh-hhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYS-NHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
.++........++....+.. ...+.+.+.. .+.... ...+. ++++|+.+.|+......+|..++|.+.|++.++.+
T Consensus 81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~-~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIATRALLAIGAAMI-VPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 11111112233344333322 1122222211 111122 22333 34689999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 022198 272 WDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 272 ~~~~f~~~~~~~~v~~~~~~~ 292 (301)
|++.|++...+.+++.+....
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~ 180 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTAR 180 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 999998876666655444333
No 149
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.14 E-value=4.9e-09 Score=96.15 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=98.0
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV 205 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (301)
.|.....+|.+ .+++|+|+++.++......++..++.++.|+++||+|||+ .+. ...+..++........
T Consensus 36 ~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~--------~~~-~~~~~~~~~~~~~~~~ 105 (394)
T PRK10213 36 EFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY--------VVI-LFAVLLTLSCLLVSFA 105 (394)
T ss_pred HHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH--------HHH-HHHHHHHHHHHHHHHH
Confidence 33444456664 4678999999999988889999999999999999998762 111 1111111111111222
Q ss_pred CChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHH
Q 022198 206 DSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLY 283 (301)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~ 283 (301)
++......+ ...+.+.+.. .+...+...|.. +++++.+.++.....+++..++|.+.+++.++.+|+..|.+.+++.
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGF-WAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233222222 1222222211 111222334444 4678999999999999999999999999999889999998877666
Q ss_pred HHHHHHH
Q 022198 284 LVGTAVW 290 (301)
Q Consensus 284 ~v~~~~~ 290 (301)
+++.+..
T Consensus 185 ~~~~l~~ 191 (394)
T PRK10213 185 VLCIFWI 191 (394)
T ss_pred HHHHHHH
Confidence 6554443
No 150
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.14 E-value=3.2e-09 Score=99.57 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=103.2
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198 117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA 196 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~ 196 (301)
+..+............+|.+. +++|.|..+.++......++..++.++.|+++||+|||+. +. .+.+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~ 78 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL--------FL-ISTFAFT 78 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH--------HH-HHHHHHH
Confidence 334444444444556677655 5789999999999999999999999999999999987621 11 1111122
Q ss_pred HHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198 197 FFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD 274 (301)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~ 274 (301)
+........++....+.. ...+.+.+.. .+.......|.. +++|+.+.++.+....+|..++|.+.|++.++.+|+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~ 157 (485)
T TIGR00711 79 LGSLLCGVAPNLELMIIFRVIQGFGGGPL-IPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW 157 (485)
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence 121112223333332222 1112222211 122233344554 4789999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHH
Q 022198 275 VFKVSVGLYLVGTAV 289 (301)
Q Consensus 275 ~f~~~~~~~~v~~~~ 289 (301)
.|.+.+.+.+++.+.
T Consensus 158 ~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 158 IFLINVPIGIIVVVV 172 (485)
T ss_pred hhhhhhHHHHHHHHH
Confidence 998876655555443
No 151
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.13 E-value=9.8e-09 Score=93.36 Aligned_cols=245 Identities=11% Similarity=0.093 Sum_probs=128.5
Q ss_pred HHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCh
Q 022198 24 VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPW 103 (301)
Q Consensus 24 ~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (301)
.-..+++|-+++..++|.+.+. +=+..|++....+++..++.+...++++++.+ ..+++. .++++.+..+.
T Consensus 143 ~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~ 213 (412)
T PF01306_consen 143 ARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAE-VADALG-------AKKDKVSLKDV 213 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS--SSTTSS-------S------HHHH
T ss_pred HHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhh-hhcccc-------cCCCCCcHHHH
Confidence 3445577777788888877663 22577886444444433232222233332211 111100 00111111134
Q ss_pred HHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHh---CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcH
Q 022198 104 GLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVL---HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSV 180 (301)
Q Consensus 104 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~---g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~ 180 (301)
.+++|+|++|...+........++.+-.-.|.|.++.. +.+..-.|+......+.=++...+..++.+|+|.|
T Consensus 214 ~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k---- 289 (412)
T PF01306_consen 214 LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK---- 289 (412)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH----
Confidence 57899999999776665554455656555777776422 33334456665655556666777777888888765
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhcc-CCCchHHHHHHH-hHHHhhHHh
Q 022198 181 TTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLS-NTAGVLAGV 257 (301)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~-~~~~~lgg~ 257 (301)
+.+...+.+... =....+..+++..+...-.. +.-+. ......+.+..+. ++|..++...+. +...+++..
T Consensus 290 ----~~Lllag~i~~i-Ri~~~~~~~~~~~i~~~klLH~~e~~-l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~ 363 (412)
T PF01306_consen 290 ----NLLLLAGVIMAI-RIIGSGFATNPWVISLIKLLHALEFP-LLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII 363 (412)
T ss_dssp ----HHHHHHHHHHHH-HHHHHHT--SHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred ----hHHHHHHHHHHH-HHHHHhhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 222222222111 11222344556443332111 11111 1111222333333 456777777774 677788999
Q ss_pred HHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198 258 FGTAATGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 258 ~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
+.+.+.|.+-|+.|++..|.+++.+.+...
T Consensus 364 i~s~~~G~lyd~~G~~~tylimg~iv~~~~ 393 (412)
T PF01306_consen 364 ILSPLAGYLYDRIGFQHTYLIMGLIVLPFT 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence 999999999999889988888776655443
No 152
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.12 E-value=4.3e-09 Score=96.74 Aligned_cols=150 Identities=13% Similarity=-0.003 Sum_probs=92.9
Q ss_pred HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198 130 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 209 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (301)
..-+|. +++++|.|..+.+.......++..++.++.|+++||++||+. +. ......++........++..
T Consensus 33 ~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~--------l~-~~~~~~~~~~~~~~~~~~~~ 102 (406)
T PRK15402 33 QPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV--------ML-AGVAFFILTCLAILLAQSIE 102 (406)
T ss_pred hcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--------HH-HHHHHHHHHHHHHHHHccHH
Confidence 334554 446889999999999888999999999999999999987631 11 11111111111111222332
Q ss_pred HHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198 210 MAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 210 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
..+.. ...+.+.+.. .+.......|.. ++.++.+.++.+....++..++|.+.+++.++.+|+..|.+.+++.+++.
T Consensus 103 ~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 103 QFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 22221 1112111111 111223333443 45677777888888888899999999999998889999988777777665
Q ss_pred HHH
Q 022198 288 AVW 290 (301)
Q Consensus 288 ~~~ 290 (301)
+..
T Consensus 182 ~~~ 184 (406)
T PRK15402 182 FGL 184 (406)
T ss_pred HHH
Confidence 543
No 153
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.11 E-value=8.4e-09 Score=94.84 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=93.9
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhh--hhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF--GSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~--g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
+..+++++|+|++||+++.|+..++..+|.+++++++++ ...+|||+-+.+. ..-+...+.++-.++| .|++.--.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP-~~~~sl~f 211 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLK-RPKRSLFF 211 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC-CCchhhhh
Confidence 467899999999999999999999999999999999999 5678999987653 2222222223333444 33321000
Q ss_pred CHHH----H--HHHHhc-cCCC--C---CC-CC--------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Q 022198 81 RPAE----K--KLIVSS-CASK--E---PV-KT--------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQ 139 (301)
Q Consensus 81 ~~~~----~--~~~~~~-~~~~--~---~~-~~--------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~ 139 (301)
++.+ . ...... +.++ . ++ +. .++++..+||....-.+-..+...+++-+.+|.-.+..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~ 291 (511)
T TIGR00806 212 NRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGT 291 (511)
T ss_pred ccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0000 0 000000 0000 0 00 00 123344566654332222233455777788888777765
Q ss_pred HhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198 140 VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173 (301)
Q Consensus 140 ~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~ 173 (301)
..+-...-=|..-++..+.+.+..+..|++-.++
T Consensus 292 v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w 325 (511)
T TIGR00806 292 LDESLNKYNGAVDAASTLLGAITSFIAGFVNIRW 325 (511)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4221111223334444556777888888876554
No 154
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.11 E-value=5.1e-10 Score=100.89 Aligned_cols=163 Identities=13% Similarity=0.009 Sum_probs=100.7
Q ss_pred HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198 120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 199 (301)
Q Consensus 120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
++.......+...+| ++++++|+|..+.+++.....++..++.++.|+++||++||+.... +....++..
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~---------~~~~~~~~~ 74 (379)
T TIGR00881 5 AAYYLVRKNFALAMP-YLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPI---------GLILCAIVN 74 (379)
T ss_pred hHHHHhHHhhhhhhH-HHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHH---------HHHHHHHHH
Confidence 333444555666666 5667899999999999999999999999999999999998743211 111111111
Q ss_pred HHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHH-hHhhhhcccCcchHHH
Q 022198 200 TQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT-AATGYILQHGSWDDVF 276 (301)
Q Consensus 200 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~-~l~g~l~~~~~~~~~f 276 (301)
.......+....+.. ...+.+.+ ...+...+...+..| ++|+.+.++.+....+|+.++| .+.+.+.++.+|+..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (379)
T TIGR00881 75 LFFGFSTSLWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVF 153 (379)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHH
Confidence 111122233222222 11122211 112223334445544 5789999999999999999999 4666666777899988
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022198 277 KVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 277 ~~~~~~~~v~~~~~~~~ 293 (301)
.+.+.+.++..+....+
T Consensus 154 ~~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 154 IVPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHHHHHhee
Confidence 87776665544444333
No 155
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.11 E-value=1e-08 Score=93.43 Aligned_cols=149 Identities=15% Similarity=0.050 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
+.++...+..++...........+|.|++ ++|.|.+++|+......++..++.++.|+++||+|||+. +.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~--------~~- 75 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS--------YY- 75 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HH-
Confidence 45666677777766677778899999887 569999999999999999999999999999999997621 11
Q ss_pred HhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhh-hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 190 IGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.+....++........++....+.+ ...+.+.+... +.... ...+..+++|+.+.+..+...++|..++|.+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 76 LASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1111111111111222333332222 12222222111 11111 222344568899999999999999999999999987
Q ss_pred cc
Q 022198 268 QH 269 (301)
Q Consensus 268 ~~ 269 (301)
+.
T Consensus 155 ~~ 156 (381)
T PRK03633 155 TE 156 (381)
T ss_pred cc
Confidence 76
No 156
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.09 E-value=9.2e-09 Score=94.37 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=100.5
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH
Q 022198 118 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF 197 (301)
Q Consensus 118 ~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~ 197 (301)
..++.....+....-.|.+. +++|+|+.+.++......++..++.++.|+++||+|||+... .......+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~~~~~ 92 (406)
T PRK11551 23 VALLEGLDLQSAGVAAPRMA-QEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILI---------VSVALFGL 92 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHHHHHH
Confidence 33333334444555666655 568999999999999999999999999999999999773211 11111111
Q ss_pred HHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198 198 FLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV 275 (301)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~ 275 (301)
.........+....+.. ...+.+.+. ..+...+...|.. +++|+.+.++.+....+|+.+++.+.+.+.+..+|+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 171 (406)
T PRK11551 93 FSLATAQAWDFPSLLVARLLTGVGLGG-ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI 171 (406)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 11111122333222221 112222221 1122233344554 47899999999999999999999998888888889998
Q ss_pred HHHHHHHHHHHHHH
Q 022198 276 FKVSVGLYLVGTAV 289 (301)
Q Consensus 276 f~~~~~~~~v~~~~ 289 (301)
|.+.+++.++..+.
T Consensus 172 ~~~~~~~~~~~~~~ 185 (406)
T PRK11551 172 FYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 88876655554433
No 157
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.09 E-value=7e-09 Score=95.08 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=97.8
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198 127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 206 (301)
Q Consensus 127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (301)
+.....+|. +++++|+|.++.++......++..++.++.|+++||+|||+. ...+....++........+
T Consensus 26 ~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~---------l~~~~~l~~~~~~~~~~a~ 95 (393)
T PRK09705 26 TSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS---------VAISLLLIAVGALMRELYP 95 (393)
T ss_pred hccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH---------HHHHHHHHHHHHHHHHHCc
Confidence 445566776 556889999999999999999999999999999999998732 1122222222222222333
Q ss_pred ChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHH
Q 022198 207 SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYL 284 (301)
Q Consensus 207 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~ 284 (301)
+....+. -...+.+.+... ........+..|++|+.+.+..+....+|+.+++.+.+++.++ .+|+..+.+.+...+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV 174 (393)
T ss_pred chHHHHHHHHHHHhHHHHHh-hhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3332222 122222222111 1112233445567889999998888889999999999999888 489887766555444
Q ss_pred HHHHHH
Q 022198 285 VGTAVW 290 (301)
Q Consensus 285 v~~~~~ 290 (301)
+....+
T Consensus 175 ~~~~~~ 180 (393)
T PRK09705 175 VALFAW 180 (393)
T ss_pred HHHHHH
Confidence 443333
No 158
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.09 E-value=3.7e-09 Score=96.50 Aligned_cols=161 Identities=10% Similarity=-0.000 Sum_probs=98.8
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+.+++...++.....++|.|++ ++|+|..+.++......+...++.++.|.++||++|+. ..++.+.. ....
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~----~~~~~~~~-~~~l 82 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII----IALRLLAL-ASAI 82 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH----HHHHHHHH-HHHH
Confidence 444455544455556788999996 57999999999999999999999999999999987531 11222211 1111
Q ss_pred HHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198 195 PAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 273 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~ 273 (301)
..+... ...++....+.... .+.+... ..+...+...+ .+++++.+.|.....+.+|..++|.+.|++.++.||+
T Consensus 83 ~~~~~~--~~~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~ 158 (382)
T TIGR00902 83 FAAAFS--AGAHNAWLLFIAIGLFALFFSA-GMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ 158 (382)
T ss_pred HHHHHH--HhhhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 111111 12223322222211 1111111 11111122222 2456677888889999999999999999999998999
Q ss_pred HHHHHHHHHHHH
Q 022198 274 DVFKVSVGLYLV 285 (301)
Q Consensus 274 ~~f~~~~~~~~v 285 (301)
..|.+.....++
T Consensus 159 ~~f~~~~~~~~~ 170 (382)
T TIGR00902 159 NILAILTAGLAF 170 (382)
T ss_pred HHHHHHHHHHHH
Confidence 988876554333
No 159
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.09 E-value=2.8e-09 Score=96.36 Aligned_cols=153 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
+....| ++++++|+|..+.+++.....++..++.++.|+++||+|||+..... .+..++.........+.
T Consensus 13 ~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~---------~~~~~~~~~~~~~~~~~ 82 (399)
T TIGR00893 13 LSFAAP-MLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVF---------IVIWGVFTGLQAFAGAY 82 (399)
T ss_pred hhHhHH-HHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHH---------HHHHHHHHHHHHHHcCH
Confidence 334444 47778999999999999999999999999999999999977532211 11111111111112233
Q ss_pred HHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198 209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 286 (301)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~ 286 (301)
...... ...+.+.+.. .+.......|..| ++|+.+.++.+....+|+.++|.+.+.+.++.+|+..|.+.++..++.
T Consensus 83 ~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 222222 2222222211 1222334445555 689999999999999999999999999999888999998877766665
Q ss_pred HHHHHh
Q 022198 287 TAVWNL 292 (301)
Q Consensus 287 ~~~~~~ 292 (301)
.+....
T Consensus 162 ~~~~~~ 167 (399)
T TIGR00893 162 GVLWLK 167 (399)
T ss_pred HHHhhh
Confidence 544433
No 160
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.09 E-value=3.8e-09 Score=94.02 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=107.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH
Q 022198 116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 195 (301)
Q Consensus 116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~ 195 (301)
.+..++.....+......|.+.+ ++|.|..+.+.......++..++.++.|+++||++||+... .+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~---------~~~~~~ 74 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLL---------LGLLLF 74 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhH---------HHHHHH
Confidence 34455556667777888888886 46999999999999999999999999999999998774211 111111
Q ss_pred HHHHHHhhccCChHHHHHHH-HHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198 196 AFFLTQLSHVDSPAMAVLCM-ACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 273 (301)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~ 273 (301)
.+........++........ ..+.+.+ ...+...+...|..| ++|+...++.+....+|+.++|.+.+.+.++.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (352)
T cd06174 75 ALGSLLLAFASSLWLLLVGRFLLGLGGG-ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153 (352)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHcccc-cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11111111222332222221 1111111 111222333445544 58999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022198 274 DVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 274 ~~f~~~~~~~~v~~~~~ 290 (301)
..+.+.+...+++.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 154 WLFLILAILGLLLALLL 170 (352)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777766665443
No 161
>PTZ00207 hypothetical protein; Provisional
Probab=99.08 E-value=2.9e-08 Score=94.65 Aligned_cols=288 Identities=14% Similarity=0.071 Sum_probs=152.4
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCC--C---
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA--E--- 76 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~--~--- 76 (301)
+++...+.+||| ++||+++|+..++..+|+++..++...+.. .+|++.|++.+++++++.++++...++.|. .
T Consensus 139 ~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~ 216 (591)
T PTZ00207 139 LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQ 216 (591)
T ss_pred HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccc
Confidence 356678899997 689999999999999999765544444433 469999999899887766555554443331 1
Q ss_pred CCCCCHHHHH-----------------H--------------------------------------HH------h-----
Q 022198 77 DPQLRPAEKK-----------------L--------------------------------------IV------S----- 90 (301)
Q Consensus 77 ~~~~~~~~~~-----------------~--------------------------------------~~------~----- 90 (301)
....+++|+. . .. .
T Consensus 217 ~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip 296 (591)
T PTZ00207 217 EKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFP 296 (591)
T ss_pred ccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111233222 0 00 0
Q ss_pred ---------c-c-C---------------C-----------CCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhH
Q 022198 91 ---------S-C-A---------------S-----------KEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWM 133 (301)
Q Consensus 91 ---------~-~-~---------------~-----------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 133 (301)
+ + + + ..|.....+.+.+++..+|..+..++|.......+.+-+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~ 376 (591)
T PTZ00207 297 LTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA 376 (591)
T ss_pred HHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence 0 0 0 0 001101145667788889999988888755555555556
Q ss_pred HHHHHHHh-CCCcch--hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH
Q 022198 134 PTYYNQVL-HFNLTE--SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM 210 (301)
Q Consensus 134 p~~l~~~~-g~s~~~--~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (301)
-...+ .+ |.+.++ ..++.++..++..+|.+..|+++...-+|......-|.....+..++....+..+.......+
T Consensus 377 ~qI~~-sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L 455 (591)
T PTZ00207 377 RFIYT-ALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL 455 (591)
T ss_pred HHHHH-HhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence 55554 55 774443 343678889999999999999984333332000001222222222222111111111221223
Q ss_pred HHHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHH-HhHhhhhcccC----c---------chHHH
Q 022198 211 AVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFG-TAATGYILQHG----S---------WDDVF 276 (301)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~-~~l~g~l~~~~----~---------~~~~f 276 (301)
.+.....+++.+... +.......|+..++-|.-..+.....-+|..+- -.+.|.+.|+. + +...|
T Consensus 456 ~~~~~lvg~~~G~~~-~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~ 534 (591)
T PTZ00207 456 PLPYFIAAFANGFMA-ATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL 534 (591)
T ss_pred HHHHHHHHHHhhHhH-HHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence 333333333332211 112233345555555543333333333333332 34556666651 1 55678
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022198 277 KVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 277 ~~~~~~~~v~~~~~~~~ 293 (301)
.+++++..++++.-..+
T Consensus 535 ~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 535 AFLLGLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 88877777776554333
No 162
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.06 E-value=5.7e-09 Score=95.23 Aligned_cols=160 Identities=11% Similarity=-0.019 Sum_probs=96.4
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH
Q 022198 119 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF 198 (301)
Q Consensus 119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~ 198 (301)
+++...+...+..++|.|+++ +|.|.++.|.......+...++.++.|+++||++||. .. ++.+...... ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~---~~-~~~~~~~~~~-~~~~ 86 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLI---PA-LRLLALLTLL-FAVA 86 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchH---HH-HHHHHHHHHH-HHHH
Confidence 344444556677889999965 6999999999999999999999999999999998641 11 1222211111 1111
Q ss_pred HHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHH
Q 022198 199 LTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFK 277 (301)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~ 277 (301)
. ....++......... .+.+.+ ...+...+...+. .++++.+.+..+..+.+|..++|.+.|++.|+.||+..|+
T Consensus 87 ~--~~~~~~~~~l~i~~~l~g~~~~-~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 87 F--WFGAHSFWLLFVAIGLFNLFFS-PLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred H--HHhcccHHHHHHHHHHHHHHHc-ccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 1 111223322221111 111111 1112111222222 3345555666777778999999999999999989999998
Q ss_pred HHHHHHHHHHH
Q 022198 278 VSVGLYLVGTA 288 (301)
Q Consensus 278 ~~~~~~~v~~~ 288 (301)
+.++..++..+
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK11128 163 ILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 77655544433
No 163
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.06 E-value=1.3e-08 Score=93.98 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=96.3
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 193 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~ 193 (301)
..++..+......+.....+| ++++++|.|..+.++......++..++.++.|+++||+|||.. +. .+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~--------l~-~~~~ 91 (426)
T PRK12307 22 SAWLGYVFDGFDFMLIFYIMY-LIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL--------MM-WSIV 91 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH--------HH-HHHH
Confidence 334444444444444444454 4667889999999999999999999999999999999987621 11 1111
Q ss_pred HHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 194 GPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
..++........++......+ ...+.+.+... +.......|. ++++|+.+.++.+....+|..+++.+.+.+.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 111111111122222222221 12222222111 1112223344 44678999999999889999999999999988889
Q ss_pred chHHHHHHHH
Q 022198 272 WDDVFKVSVG 281 (301)
Q Consensus 272 ~~~~f~~~~~ 281 (301)
|+..|.+...
T Consensus 171 w~~~f~i~~~ 180 (426)
T PRK12307 171 WRAAFFVGLL 180 (426)
T ss_pred HHHHHHHHHH
Confidence 9999877543
No 164
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.06 E-value=8.6e-09 Score=96.37 Aligned_cols=153 Identities=11% Similarity=0.066 Sum_probs=98.1
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198 127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 206 (301)
Q Consensus 127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (301)
+.+..++|.+. +++|.|.++.++......+...++.++.|+++||++||+. +. ...+...+........+
T Consensus 36 ~~~~~~~~~i~-~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~--------l~-~~~~~~~~~~~~~~~~~ 105 (455)
T TIGR00892 36 KAVTVFFKELQ-QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV--------VI-AGGLLASLGMILASFSS 105 (455)
T ss_pred cchhhhHHHHH-HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH--------HH-hhHHHHHHHHHHHHHhh
Confidence 34566777655 5789999999999888888888999999999999987631 11 11111111111111222
Q ss_pred ChHHHHH-H-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198 207 SPAMAVL-C-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 207 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~ 284 (301)
+...... . +..+.+.+....+ ..+...+..+++|+.+.++.+....+++.++|.+.|++.+..||+..|.+.+++.+
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~ 184 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL 184 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2222211 1 1112222211111 22333344577899999999999999999999999999998899999998877766
Q ss_pred HHHHHH
Q 022198 285 VGTAVW 290 (301)
Q Consensus 285 v~~~~~ 290 (301)
++.+.+
T Consensus 185 ~~~v~~ 190 (455)
T TIGR00892 185 HCCVCG 190 (455)
T ss_pred HHHHHH
Confidence 654443
No 165
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.05 E-value=5.7e-09 Score=94.69 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=97.9
Q ss_pred HHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC
Q 022198 127 FILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD 206 (301)
Q Consensus 127 ~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (301)
......+|.+.+ ++|+|..+.++......++..++.++.|+++||++||+ .+. .+.+..++........+
T Consensus 8 ~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~~~-~~~~~~~i~~~~~~~~~ 77 (377)
T PRK11102 8 DMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP--------VIL-GGTLVFALAAVACALAQ 77 (377)
T ss_pred HHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH--------HHH-HHHHHHHHHHHHHHHHc
Confidence 334456677665 68999999999999999999999999999999998652 111 11211111111111222
Q ss_pred ChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHH
Q 022198 207 SPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYL 284 (301)
Q Consensus 207 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~ 284 (301)
+....... ...+.+.+.. .....+...+.. +++|+.+.++.+....+++.++|.+.+.+.++.+|+..|.+.+.+.+
T Consensus 78 ~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 156 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAA-SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAI 156 (377)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 33222221 1112221111 111223334444 46789999999999999999999999999998889999888766666
Q ss_pred HHHHHHH
Q 022198 285 VGTAVWN 291 (301)
Q Consensus 285 v~~~~~~ 291 (301)
++.+...
T Consensus 157 ~~~~~~~ 163 (377)
T PRK11102 157 LAAALVF 163 (377)
T ss_pred HHHHHHH
Confidence 6544433
No 166
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.04 E-value=1.8e-08 Score=94.89 Aligned_cols=161 Identities=7% Similarity=0.031 Sum_probs=98.5
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 193 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~ 193 (301)
..++..+...+........+|. +++++|+|..+.++......++..++.++.|+++||+|||+. +. ...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~ 93 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTE-VQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA--------MV-ISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHH
Confidence 3444444444444445555655 557889999999999998999999999999999999987621 11 1111
Q ss_pred HHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc
Q 022198 194 GPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~ 271 (301)
..++.........+.... +.....+.+.+.. .........+.. +++++.+.++.+....+|..++|.+.+.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGE-YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 111111111122222222 1111122221111 111222334444 4678999999999999999999999999999989
Q ss_pred chHHHHHHHHHHHH
Q 022198 272 WDDVFKVSVGLYLV 285 (301)
Q Consensus 272 ~~~~f~~~~~~~~v 285 (301)
|+..|.+.+...++
T Consensus 173 w~~~f~~~~~~~~~ 186 (496)
T PRK03893 173 WRALFFIGILPIIF 186 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988765444333
No 167
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.04 E-value=9.9e-09 Score=95.82 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhc--
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSH-- 204 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 204 (301)
+..++| +++++ |+|..+.++......++..++.++.|+++||+|+|+... .+.+..++.... +..
T Consensus 48 ~~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~---------~~~~~~~i~~~~~~~~~~~ 116 (452)
T PRK11273 48 FALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP---------AGLILAAAVMLFMGFVPWA 116 (452)
T ss_pred HHHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHH---------HHHHHHHHHHHHHHhhhcc
Confidence 345566 56667 999999999999999999999999999999999773211 111111111111 111
Q ss_pred cCChHHHHHH-HHHHHhhhhhhhcchhhhhhc-cCCCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHHHHHHH
Q 022198 205 VDSPAMAVLC-MACSQGTDAFSQSGLYSNHQD-IAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVFKVSVG 281 (301)
Q Consensus 205 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f~~~~~ 281 (301)
..+....... ...+.+.+ ...+.......+ .++++|+.+.++.+....+|+.+ +|.+...+....+|+..|++.++
T Consensus 117 ~~~~~~~~~~~~l~gi~~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 TSSIAVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred cccHHHHHHHHHHHHHHHh-ccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1122222111 11122111 111111122223 34578999999999988888755 44433333333589999988766
Q ss_pred HHHHHHHH
Q 022198 282 LYLVGTAV 289 (301)
Q Consensus 282 ~~~v~~~~ 289 (301)
+.++..++
T Consensus 196 ~~~~~~~l 203 (452)
T PRK11273 196 AAILVALF 203 (452)
T ss_pred HHHHHHHH
Confidence 65554333
No 168
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.00 E-value=1.8e-08 Score=95.31 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=119.1
Q ss_pred hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q 022198 106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRK 185 (301)
Q Consensus 106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~ 185 (301)
-||||.+..+++..+..+.|.+....=++-++.+ ..-|+...+++.....+-..+.++++|.++||+.||+.....
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~--- 81 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILS--- 81 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH---
Confidence 5788888888888888777766655445545544 366788888888888888899999999999999876322111
Q ss_pred HHHHHhhHH-HHHHHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhH
Q 022198 186 IMQSIGFLG-PAFFLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAA 262 (301)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l 262 (301)
..+..+. ..+.+.......++..++.+ .+..+. ..+..+...+..++..|+ +...++++++...+++-.+||.+
T Consensus 82 --~~~~~~~~~~L~~l~~~~~~~~~~Ll~~-~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal 158 (524)
T PF05977_consen 82 --QLLRALVALLLAVLAFFGLLSPWLLLIL-TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL 158 (524)
T ss_pred --HHHHHHHHHHHHHHHHhCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence 0111111 11111111122333332222 222222 233344455566666664 66888899999999999999999
Q ss_pred hhhhcccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198 263 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLFST 295 (301)
Q Consensus 263 ~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 295 (301)
+|.++...|....|.+-+..+++..+.+..+++
T Consensus 159 gG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 159 GGILVAFFGAAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999878888888878888877666656543
No 169
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.98 E-value=1.6e-08 Score=92.77 Aligned_cols=168 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 022198 109 KPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQ 188 (301)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~ 188 (301)
+|.++..++..++...+......-+|.+ .+++|.|..+.++......+...+..++.|+++||++||+......
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~----- 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIAN----- 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHH-----
Confidence 3456666666666666555555555555 4577999999999999899999999999999999999875322211
Q ss_pred HHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 189 SIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.......+.. .. ..++ .+.-...+.+.+ ...+...+...|..| ++++.+.++.+...+++..+||.++|++.
T Consensus 76 -~~~~~~~~~~-~~--~~~~--~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 76 -GIKLLGCLLM-LF--GIHP--LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred -HHHHHHHHHH-HH--HHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111 11 1122 111111122111 222333444556555 67999999999999999999999999999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHH
Q 022198 268 QHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 268 ~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+.. |...+.+.+.+++++.+..
T Consensus 149 ~~~-~~~~~~i~~~~~~~~~~~~ 170 (393)
T PRK11195 149 DPH-AEAALAVCALIYLLAALFN 170 (393)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHH
Confidence 874 6666666655555554443
No 170
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.4e-08 Score=91.03 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
.+|..++.. ..++..+.+..=+-..+++++|+|+.|.+++..++.+.+.+..+.-|.+.||+|.|.+. ....+
T Consensus 15 ~L~~S~~af-~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~------~~s~~ 87 (417)
T COG2223 15 NLWLSTLAF-DVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWT------ILSML 87 (417)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHH------HHHHH
Confidence 444444433 33444555555555677799999999999999999999999999999999999976321 11112
Q ss_pred hhHHHHHHHHHhhccCCh-HHHHHHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 191 GFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
..+.+++.+.......+. ..++.-+.++.+.+.|+.+.-+ .....+|+..|.+.|++. .||+|.++.+.+...+...
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~-~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPN-ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehccccc-ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 223343333322222221 2222223334433445443222 223345568899999976 9999999999988888888
Q ss_pred Cc---chHHHHHHHHHHHHHHHHHHhh
Q 022198 270 GS---WDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 270 ~~---~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+ |+.+..+.....+++.+...+.
T Consensus 166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~ 192 (417)
T COG2223 166 FGFLAWRNVAGIYVVALAIAAVLAWLG 192 (417)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 8877777666666655444443
No 171
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.97 E-value=3.7e-08 Score=90.47 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=98.4
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhh
Q 022198 118 SHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSVTTVRKIMQSIGF 192 (301)
Q Consensus 118 ~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~~~~~~~~~~~~~ 192 (301)
.++.+.........-+|.|++++ |+|.++.|++..+... .+..++.|+++||+ ||| |+++.. ..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~r-------r~~l~~-~~ 75 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRR-------RGWLLL-TQ 75 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcc-------hhHHHH-HH
Confidence 34455555556678899999865 9999999998766543 58889999999999 554 222221 11
Q ss_pred HHHHH--HHHHhhccCChHHHHHHHHHHHhh-hhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 193 LGPAF--FLTQLSHVDSPAMAVLCMACSQGT-DAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
+..++ ....+.........+.......+. .....+..-+...|..| ++|+.+.++......+|..+++.+.+++.+
T Consensus 76 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 76 VGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 11111 111121111111211111111111 11111222233344444 569999999888888899999999999988
Q ss_pred c-CcchHHHHHHHHHHHHHHHHH
Q 022198 269 H-GSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 269 ~-~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+ .||+..|.+.++..+++.+..
T Consensus 156 ~~~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 156 RVLGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 6 589999998877766655543
No 172
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.97 E-value=8.2e-08 Score=89.16 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
|.++..++..+......+....-.|.+-++++|+|.+|.+++..++.+++.+..+..|++.||+|.|+ ...
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~--------v~~- 104 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR--------WTV- 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--------HHH-
Confidence 45666555544433344444444555555589999999999999999999999999999999999762 111
Q ss_pred HhhHHHHHHHHHhhc-----cCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhH
Q 022198 190 IGFLGPAFFLTQLSH-----VDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAA 262 (301)
Q Consensus 190 ~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l 262 (301)
...+..++....... .++.... +.-...+.+...+ ........+..| +++|.+.|+....+++|..+++.+
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f--~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANF--ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhH--HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH
Confidence 111111111111111 1222222 2122222221112 112223333344 679999999877788877766555
Q ss_pred hhh
Q 022198 263 TGY 265 (301)
Q Consensus 263 ~g~ 265 (301)
...
T Consensus 183 ~p~ 185 (462)
T PRK15034 183 APL 185 (462)
T ss_pred HHH
Confidence 543
No 173
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.96 E-value=6e-08 Score=95.11 Aligned_cols=149 Identities=18% Similarity=0.173 Sum_probs=90.3
Q ss_pred HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198 130 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 209 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (301)
...+| .+++++|++..+.+++.....++..+|.++.|+++||+|||+. +. ..++...+.........+..
T Consensus 187 s~ilp-~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~--------li-i~lil~~i~~ll~afa~s~~ 256 (742)
T TIGR01299 187 GFVLP-SAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC--------LL-ICLSVNGFFAFFSSFVQGYG 256 (742)
T ss_pred HHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHHHHHHHHHHHHHhhHH
Confidence 34455 4556789999999999999999999999999999999997632 11 11111111111111222222
Q ss_pred HHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-------------CcchH
Q 022198 210 MAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-------------GSWDD 274 (301)
Q Consensus 210 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-------------~~~~~ 274 (301)
.++ .-...+++.+.. .+.......|..| +.|+...++.+.+..+|+.+++.+...+..+ .+|+.
T Consensus 257 ~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~ 335 (742)
T TIGR01299 257 FFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence 222 222223332221 1223344455555 6899999999999999999998877665543 25777
Q ss_pred HHHHHHHHHHHHHHH
Q 022198 275 VFKVSVGLYLVGTAV 289 (301)
Q Consensus 275 ~f~~~~~~~~v~~~~ 289 (301)
.+.+.+...+++.+.
T Consensus 336 l~~i~~lp~ll~ll~ 350 (742)
T TIGR01299 336 FVIVCAFPCVFAIGA 350 (742)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777665555554433
No 174
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.96 E-value=1e-06 Score=82.76 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=50.3
Q ss_pred CchhhhHhhccCcc--hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhh
Q 022198 2 PAMNNILSKWVPVA--ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGS 57 (301)
Q Consensus 2 p~~~~~i~~~~p~~--~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~ 57 (301)
|+..++++|.+|++ +|.++.++.+.+.++|..+++.+.+++.+.+|||+.|.+.++
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 55678899999986 799999999999999999999999999999999999998443
No 175
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.94 E-value=4.5e-08 Score=101.52 Aligned_cols=179 Identities=16% Similarity=0.085 Sum_probs=99.2
Q ss_pred HhhcChhHHHHHHHHHhhHHHHHHH----HHhHHHHHHHHhCCCc-chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCc
Q 022198 105 LILSKPPVWALIVSHFCHNWGTFIL----LTWMPTYYNQVLHFNL-TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLS 179 (301)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~~~----~~wlp~~l~~~~g~s~-~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~ 179 (301)
.++|++.++.++...++..++-+.. ..+.+..+.+..+.+. ...++......+...+..+++|+++||++||+..
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 4677777776666655554443322 2222222222222222 2356666677788899999999999999987321
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhh-hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHh
Q 022198 180 VTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTD-AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGV 257 (301)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~ 257 (301)
+.+..............+.. .+...++++ ....+.+ .+..+...+...+.. +++++.++|+.++..++|..
T Consensus 86 -----~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~-~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 86 -----KILKFAEIGIAALAIYGFHL-NSVPLLFAA-LFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL 158 (1140)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH-hhHHHHHHH-HHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH
Confidence 01111111111111111111 223222222 1122221 222233344444554 46789999999999999999
Q ss_pred HHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 258 FGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 258 ~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+||.++|++.+..+|...|.......+++.+..
T Consensus 159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 191 (1140)
T PRK06814 159 LGTIIGGLATISGNFVILVALLMGIAVLGWLAS 191 (1140)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999889988844444444444443
No 176
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.94 E-value=1.4e-08 Score=95.30 Aligned_cols=158 Identities=15% Similarity=0.010 Sum_probs=93.0
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
+..-.|. +++++|+|..+.|++.....++..++.++.|+++||+|+|+..... +...................+.
T Consensus 48 ~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ 122 (467)
T PRK09556 48 FKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFL----LILSAICMLGFGASLGSGSVSL 122 (467)
T ss_pred hhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHH----HHHHHHHHHHHHHHHhcccchH
Confidence 3444665 5568999999999999999999999999999999999987422110 0000111111111111112222
Q ss_pred HHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHH
Q 022198 209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLY 283 (301)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~ 283 (301)
...+.+ ...+.+.+ ...+.......+.. +++||.+.|+.+..+++|+.+++.+..++.++ .+|+..|.+.+++.
T Consensus 123 ~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~ 201 (467)
T PRK09556 123 GLMIALWALSGFFQS-TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA 201 (467)
T ss_pred HHHHHHHHHHHHHHh-ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 222222 11122111 11122233344444 46899999999999999999999888777664 25888887766555
Q ss_pred HHHHHHHHh
Q 022198 284 LVGTAVWNL 292 (301)
Q Consensus 284 ~v~~~~~~~ 292 (301)
++.++.+..
T Consensus 202 ~~~~i~~~~ 210 (467)
T PRK09556 202 LIIGFIGLR 210 (467)
T ss_pred HHHHHHHHH
Confidence 544443333
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.2e-07 Score=85.58 Aligned_cols=174 Identities=18% Similarity=0.109 Sum_probs=114.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI 190 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~ 190 (301)
..+.+.++.|+....=+....-+|.. .+++|.|..++|++...+.++..++.++-..++||+.||+....
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~--------- 83 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG--------- 83 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH---------
Confidence 45566666676666666677778774 56889999999999999999999999999999999987632111
Q ss_pred hhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 191 GFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
.+....+.........+-...+. =...+...+.|.. .......+. +|++++.+.+++++.-.++..+|..++.++-|
T Consensus 84 ~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~ 162 (394)
T COG2814 84 LLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ 162 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 11111111111112222222211 1112222222211 112223344 56799999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198 269 HGSWDDVFKVSVGLYLVGTAVWNLFST 295 (301)
Q Consensus 269 ~~~~~~~f~~~~~~~~v~~~~~~~~~~ 295 (301)
..||+..|+..+.+.+++.+.......
T Consensus 163 ~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 163 LFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988888877655544433
No 178
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.92 E-value=1.7e-10 Score=109.34 Aligned_cols=174 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc---------------------C-CchhHHhhhhhH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF---------------------G-WPSVFYSFGSLG 59 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~---------------------g-WR~~F~~~g~l~ 59 (301)
|...+|+=|..++|+-+..+|++++...+|+++|..+++.....| | |=.=|++.|.+.
T Consensus 160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~ 239 (539)
T PF03137_consen 160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL 239 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999999999887665321 2 545555555555
Q ss_pred HHHHHHHhhhccCCCCCC--CCCCH-HHHH---HHHhccCCCC-------CCCC--CChHHhhcChhHHHHHHHHHhhHH
Q 022198 60 TVWFTVWLSKAHSSPAED--PQLRP-AEKK---LIVSSCASKE-------PVKT--IPWGLILSKPPVWALIVSHFCHNW 124 (301)
Q Consensus 60 ~~~~~~~~~~~~~~p~~~--~~~~~-~~~~---~~~~~~~~~~-------~~~~--~~~~~ll~~~~~~~~~~~~~~~~~ 124 (301)
++..+..+.+-++.|+.+ ++.++ ++++ ...++..+++ ..++ ...+++++||.+....+...+...
T Consensus 240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 443322222212223221 00000 0000 0000000000 0011 124668999998887777777777
Q ss_pred HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHHH
Q 022198 125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLVS 175 (301)
Q Consensus 125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~~ 175 (301)
...++.+++|-|++++++.+++++.++.....+ ++++|.+++|++..|+.-
T Consensus 320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl 371 (539)
T PF03137_consen 320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL 371 (539)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence 888899999999999999999999998765554 778999999999999853
No 179
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.92 E-value=4.9e-08 Score=87.98 Aligned_cols=147 Identities=21% Similarity=0.217 Sum_probs=92.1
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
....+|. +++++|+|.++.++......++..++.++.|+++||+++|+. +. .+.+...+..... ..++.
T Consensus 19 ~~~~lp~-l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~--------~~-~~~~~~~~~~~~~-~~~~~ 87 (355)
T TIGR00896 19 VGPLLPQ-IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS--------VA-AGLLLIAAGILIR-SAPGT 87 (355)
T ss_pred CcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH--------HH-HHHHHHHHHHHHH-HhccH
Confidence 3456666 455789999999999999999999999999999999997631 11 1111111111111 22233
Q ss_pred HHHHHH-HHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccC--cchHHHHHHHHHHHH
Q 022198 209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLV 285 (301)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~--~~~~~f~~~~~~~~v 285 (301)
...+.. ...+.+.+.. .........+..|++++.+.++.+....+|..+++.+.+.+.++. +|+..|...++..++
T Consensus 88 ~~l~~~~~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 88 ALLFAGTALIGVGIAII-NVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHH-hccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 222211 1112222211 111122334455778899999999999999999999999988773 388888766555444
Q ss_pred HH
Q 022198 286 GT 287 (301)
Q Consensus 286 ~~ 287 (301)
+.
T Consensus 167 ~~ 168 (355)
T TIGR00896 167 AL 168 (355)
T ss_pred HH
Confidence 43
No 180
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.91 E-value=8.9e-08 Score=88.91 Aligned_cols=136 Identities=14% Similarity=0.041 Sum_probs=82.4
Q ss_pred cchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hhHHHHHHHHHhhccCCh-HHHHHHHHHHHhhh
Q 022198 145 LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSI-GFLGPAFFLTQLSHVDSP-AMAVLCMACSQGTD 222 (301)
Q Consensus 145 ~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (301)
..+.++......++..++.++.|+++||+|||+. .+... ......+.........+. ...+.-...+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~ 142 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-------LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-------HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 7899999999999999999999999999997631 11111 111111111111121111 11111122222222
Q ss_pred hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHh---hhhcccCcchHHHHHHHHHHHHHHH
Q 022198 223 AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAAT---GYILQHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 223 ~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~---g~l~~~~~~~~~f~~~~~~~~v~~~ 288 (301)
.. .+.......|.. +++|+.+.++.+....+|..+++.+. +...+..+|+..|.+.+...++..+
T Consensus 143 ~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 211 (481)
T TIGR00879 143 IA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211 (481)
T ss_pred HH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 11 122233344554 57899999999999999999999988 6666678899999886555544433
No 181
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.89 E-value=2e-07 Score=86.01 Aligned_cols=166 Identities=10% Similarity=0.048 Sum_probs=97.3
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 193 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~ 193 (301)
.....++...+........+|. +++++|+|..++++......++..++++..|++.||+|+|+. + ..+..
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~-~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~--------~-~~g~~ 76 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQ-FQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG--------I-LLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH--------H-HHHHH
Confidence 3333344333333333456665 478899999999999999999999999999999999997631 1 11221
Q ss_pred HHHHHHHHh---hccCChHHH-HHHHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 194 GPAFFLTQL---SHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
..++....+ ...++.... +.....+.+.+... +.......+. ++++++...++.+...++|..++|.+.+.+..
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLE-TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHH-hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111 111222222 22222233332221 1111222223 34678888899999999999999999887743
Q ss_pred c--------------------------CcchHHHHHHHHHHHHHHHHH
Q 022198 269 H--------------------------GSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 269 ~--------------------------~~~~~~f~~~~~~~~v~~~~~ 290 (301)
. .+|+..|.+.+++.++..+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 248888877766555544443
No 182
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.88 E-value=1.7e-07 Score=88.52 Aligned_cols=173 Identities=11% Similarity=0.062 Sum_probs=105.2
Q ss_pred hhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcH
Q 022198 106 ILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSV 180 (301)
Q Consensus 106 ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~ 180 (301)
..++|+.+......+.+....+....-+|.++++. |.|.++.+....+. ... ++.++.|.++||+ |||+
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~-g~~~~~ig~~~~~~-~~~-~~~~l~gpl~Dr~~~~~~Grrr--- 81 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVE-NIDLKTIGFFSLVG-QAY-VFKFLWSPLMDRYTPPFLGRRR--- 81 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHH-HHHHHHHHHHHcccccCCCCch---
Confidence 44556666666666666666677778899998765 99999999974332 222 6889999999999 6652
Q ss_pred HHHHHHHHHHhhHHHHHH--HHHhhc-cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhH
Q 022198 181 TTVRKIMQSIGFLGPAFF--LTQLSH-VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLA 255 (301)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lg 255 (301)
.++.. ..+..++. ...+.. .++..... .....+++. ........+...|.. +++|+.+.++.+...++|
T Consensus 82 ----~~ll~-~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~-a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG 155 (491)
T PRK11010 82 ----GWLLA-TQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS-ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLA 155 (491)
T ss_pred ----HHHHH-HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 22221 11111111 111111 12221111 111111111 111111223344554 478999999999999999
Q ss_pred HhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHH
Q 022198 256 GVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 256 g~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~ 290 (301)
..+++.+.+++.++ .||+..|.+.++..+++.+..
T Consensus 156 ~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~ 191 (491)
T PRK11010 156 MLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999994 689999998877766664443
No 183
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=4.1e-08 Score=94.29 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=118.7
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------------------CCchhHHhhhhhHHHH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------------------GWPSVFYSFGSLGTVW 62 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------------------gWR~~F~~~g~l~~~~ 62 (301)
|...+|+=|...+++-...+|++++...+|+++|..+++.....| -|..=|++.|.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999999999999998886421 2666677777766554
Q ss_pred HHHHhhhccCCCCCCCCCCHHHHHHHHhccC--CCCCC-----CCC--ChHHhhcChhHHHHHHHHHhhHHHHHHHHHhH
Q 022198 63 FTVWLSKAHSSPAEDPQLRPAEKKLIVSSCA--SKEPV-----KTI--PWGLILSKPPVWALIVSHFCHNWGTFILLTWM 133 (301)
Q Consensus 63 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wl 133 (301)
.+.++.+-++.|+..++.+.++.+....+.. .+++. ++. ..+++++||.+....+...+....+.++.+|+
T Consensus 336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFl 415 (735)
T KOG3626|consen 336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFL 415 (735)
T ss_pred HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhh
Confidence 4333322223333221111111111111110 00000 011 24668999998888888888888889999999
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHH-HHHHHHHHHHHHHHHHH
Q 022198 134 PTYYNQVLHFNLTESGLFCVLPWL-TMAFSANLGGWIADTLV 174 (301)
Q Consensus 134 p~~l~~~~g~s~~~~~~~~~~~~i-~~~~g~~~~G~l~Dr~~ 174 (301)
|-||++++|.+.+.+..+.....+ ++++|.+++|++..|+.
T Consensus 416 PKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 416 PKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 999999999999999998865554 66799999999998874
No 184
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.84 E-value=3.5e-08 Score=92.41 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=93.0
Q ss_pred HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH--hhccCChHHHHHHHH
Q 022198 139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ--LSHVDSPAMAVLCMA 216 (301)
Q Consensus 139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 216 (301)
.++|+|..+.|.+.....++..++.+++|+++||+++|.... ...+...+.... .....+....+. .-
T Consensus 69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~---------~~~~~~~~~~~~~~~~~~~~~~~l~~-~r 138 (465)
T TIGR00894 69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIG---------IGMFLSSVISIVIPWAAGGGIALVVF-CR 138 (465)
T ss_pred CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhH---------HHHHHHHHHHHHHHHHHHcCchHHHH-HH
Confidence 368999999999999999999999999999999999773211 111111111111 111111111111 11
Q ss_pred HHHhhh-hhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 217 CSQGTD-AFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 217 ~~~~~~-~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
...|.+ ....+.......+..| ++|+.+.++.+...++|..++|.+.+++.++ .+|+..|.+.++..++..+.+..+
T Consensus 139 ~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHH
Confidence 112221 1111222333445554 7899999999999999999999999999998 599999988777666655555444
No 185
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.84 E-value=3.7e-08 Score=91.20 Aligned_cols=168 Identities=17% Similarity=0.115 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH--H
Q 022198 122 HNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF--L 199 (301)
Q Consensus 122 ~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~--~ 199 (301)
.+........|++.|+++++|+|+.++|.+.....+...+..++.|+++||.++|.-++ |+++. .+....++. .
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr---r~~i~-~~~~~~~i~~~~ 86 (437)
T TIGR00792 11 NNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKF---RPWLL-IGAIPFSIVLVL 86 (437)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCc---chhHH-HhHHHHHHHHHH
Confidence 34455556789999999999999999999999999999999999999999854221000 12221 221111111 1
Q ss_pred HHhhccCC-h--HHHHHHHHHHHhhh-hhhhcchhhhhhcc--CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc-----
Q 022198 200 TQLSHVDS-P--AMAVLCMACSQGTD-AFSQSGLYSNHQDI--APRYSGVLLGLSNTAGVLAGVFGTAATGYILQ----- 268 (301)
Q Consensus 200 ~~~~~~~~-~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~----- 268 (301)
.......+ . ...........+.. .+...+..+...+. .+++|+...++.+..+.+|+.+++.+.+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 166 (437)
T TIGR00792 87 LFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG 166 (437)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111111 1 11111111111111 11111222333333 34678888888888888887777666655542
Q ss_pred --cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 269 --HGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 269 --~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
..+|...+.+.+++.++..+.....
T Consensus 167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 167 DDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 3578888877777666665544333
No 186
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.83 E-value=1.6e-07 Score=97.46 Aligned_cols=158 Identities=10% Similarity=0.080 Sum_probs=92.9
Q ss_pred HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcch--hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198 105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTE--SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 182 (301)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~--~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~ 182 (301)
.+++++.++..++..++..++..+...-+..++.+.++.+.+. .++...+..++..++.+++|+++||+|||+.....
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~ 83 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIV 83 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHH
Confidence 3677777777777776666665555555555666666665443 56667777888999999999999999987311110
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHH
Q 022198 183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
..+..+...+... .....+...++.+ ...+.+.+ +..+...+...+.. ++.++.+.|+.+....+|..+++
T Consensus 84 -----~~~~~~~~~~~~~-~~~~~~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~ 156 (1146)
T PRK08633 84 -----KLFEVGLTLLIVL-AYYLGWFWLAFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT 156 (1146)
T ss_pred -----HHHHHHHHHHHHH-HHHHccHHHHHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence 0000111111111 1111222222211 11122111 11222233444554 46899999999999999999999
Q ss_pred hHhhhhccc
Q 022198 261 AATGYILQH 269 (301)
Q Consensus 261 ~l~g~l~~~ 269 (301)
.+.+++.+.
T Consensus 157 ~l~~~l~~~ 165 (1146)
T PRK08633 157 ALFSFLFES 165 (1146)
T ss_pred HHHHHHHHh
Confidence 999998875
No 187
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.83 E-value=6.2e-08 Score=88.81 Aligned_cols=179 Identities=15% Similarity=0.195 Sum_probs=115.0
Q ss_pred HhhcCh-hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC----CCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCC
Q 022198 105 LILSKP-PVWALIVSHFCHNWGTFILLTWMPTYYNQVLH----FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGL 178 (301)
Q Consensus 105 ~ll~~~-~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g----~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~ 178 (301)
..+++| .++.++..-++--+.+|++-.-+-.|+..+.+ +|.+++.-......----...+++||++||+ |+|+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~- 93 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR- 93 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-
Confidence 366765 46667777788889999999888899998888 9988877766665544456889999999998 4432
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHhhcc--CCh-H--HHHHHHHHHHhhhhhhhcchhhh-hhccCCCchHHHHHHHhHHH
Q 022198 179 SVTTVRKIMQSIGFLGPAFFLTQLSHV--DSP-A--MAVLCMACSQGTDAFSQSGLYSN-HQDIAPRYSGVLLGLSNTAG 252 (301)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~g~a~g~~~~~~ 252 (301)
.+. .+.+..++-....... ..+ . ..+.++.++.|..-.+.+.+... .++..|| |-.+.++.+...
T Consensus 94 -------tI~-lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~i 164 (498)
T COG3104 94 -------TIV-LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGI 164 (498)
T ss_pred -------HHH-HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEe
Confidence 111 1122222211111111 112 1 22233333333222222222221 1222333 555667788889
Q ss_pred hhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 253 VLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 253 ~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
++|+.++|.+.+++.++.||+.+|..+++-..++++.+.+.
T Consensus 165 NiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 165 NIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred ehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999998888887776554
No 188
>PRK10133 L-fucose transporter; Provisional
Probab=98.81 E-value=8.4e-07 Score=82.62 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=84.5
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+.++............+|.+ ++++|.|..+.++......++..++.+..|+++||+|+|+. +. .+...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~--------l~-~g~~~ 100 (438)
T PRK10133 31 LCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--------II-TGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--------HH-HHHHH
Confidence 3444444445555566778775 88999999999999999999999999999999999997631 11 11211
Q ss_pred HHHHHHHh---hccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 195 PAFFLTQL---SHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 195 ~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.++..... ...++....+. ....+.+.+... ........+..|+ +++...+..+....+|..++|.+.+.+.
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~-~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 12223322222 222233332221 1112222344454 4455678888888999999998876543
No 189
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.81 E-value=1.3e-07 Score=72.52 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=78.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchh
Q 022198 152 CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLY 230 (301)
Q Consensus 152 ~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (301)
.....++..++.++.|++.||++||+. +. ......++........++....... ...+.+.+.. .+...
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 73 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPV--------LL-VGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA-LVAGA 73 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHH--------HH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHhHH
Confidence 345567888999999999999987631 11 1111111111111122233222221 1112222111 12223
Q ss_pred hhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 231 SNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 231 ~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
....|..| ++++...++.+...+++..++|.+.+.+.++.+|+..+.+.....+++.+....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444 6789999999999999999999999999998889888887776666665554443
No 190
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.78 E-value=3e-07 Score=82.84 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=86.3
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhhHHHHHH--HHHhh
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL-----VSKGLSVTTVRKIMQSIGFLGPAFF--LTQLS 203 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-----~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 203 (301)
.-+|.+++ +.|+|.++.++.... .+...+ .++.|+++||+ ||| |.++. ...+..++. ...+.
T Consensus 9 ~~~~~~~~-~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr-------~~~l~-~~~~~~~~~~~~l~~~ 77 (356)
T TIGR00901 9 NTLPYWLR-SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRR-------RSWLV-LTQVLLLSLLLILSFL 77 (356)
T ss_pred hHHHHHHH-HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCcc-------HHHHH-HHHHHHHHHHHHHHcC
Confidence 34566665 569999999998644 344444 88999999998 443 22222 111111111 11111
Q ss_pred ccCChHHHHHHHHHHHhhh-hhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc--------ch
Q 022198 204 HVDSPAMAVLCMACSQGTD-AFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS--------WD 273 (301)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~--------~~ 273 (301)
........+.......+.. ........+...|.. +++|+.+.++.....++|..+++.+.+.+.++.+ |+
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 1111111111111111111 111122223344544 5789999999998899999999999999988866 99
Q ss_pred HHHHHHHHHHHHHHHH
Q 022198 274 DVFKVSVGLYLVGTAV 289 (301)
Q Consensus 274 ~~f~~~~~~~~v~~~~ 289 (301)
..|.+.++..+++.+.
T Consensus 158 ~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 158 YIFFWTALLILPGLLV 173 (356)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998887777665544
No 191
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.75 E-value=3.8e-07 Score=85.22 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=99.8
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH----HHHcCCcHHHHHHHHHHHh
Q 022198 116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT----LVSKGLSVTTVRKIMQSIG 191 (301)
Q Consensus 116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr----~~~r~~~~~~~~~~~~~~~ 191 (301)
....+...+++.....+++.|++ ++|.+..+.+.+.....+.+.+..++.|+++|| +|||+. .+. .+
T Consensus 10 ~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-------~il-~g 80 (477)
T TIGR01301 10 ASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-------FIA-AG 80 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-------HHH-HH
Confidence 33334445555556788888875 679999999999999999999999999999994 887632 221 11
Q ss_pred hHHHHHHHHHhhccCC-------------hHHHHHHHHHHH---hhh-hhhhcchhhhhhccCC-Cc--hHHHHHHHhHH
Q 022198 192 FLGPAFFLTQLSHVDS-------------PAMAVLCMACSQ---GTD-AFSQSGLYSNHQDIAP-RY--SGVLLGLSNTA 251 (301)
Q Consensus 192 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p-~~--~g~a~g~~~~~ 251 (301)
....++.+..+....+ ....+.....++ -+. ...+.+.-+...|..| ++ ++.+.++.+..
T Consensus 81 ~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~ 160 (477)
T TIGR01301 81 AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF 160 (477)
T ss_pred HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence 2112222111211111 011111111111 001 1112223344556655 33 36888988888
Q ss_pred HhhHHhHHHhHhhhhc--cc-------------CcchHHHHHHHHHHHHHHHHHHhhcCC
Q 022198 252 GVLAGVFGTAATGYIL--QH-------------GSWDDVFKVSVGLYLVGTAVWNLFSTG 296 (301)
Q Consensus 252 ~~lgg~~~~~l~g~l~--~~-------------~~~~~~f~~~~~~~~v~~~~~~~~~~~ 296 (301)
.++|+.+++.+.++.. +. .+....|.+.+++.+++.+.-....+|
T Consensus 161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E 220 (477)
T TIGR01301 161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE 220 (477)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 8999999998887641 11 145678888777777766554444333
No 192
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.75 E-value=4.3e-07 Score=85.20 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=81.9
Q ss_pred CCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh-------ccCChH---HH
Q 022198 142 HFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS-------HVDSPA---MA 211 (301)
Q Consensus 142 g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~ 211 (301)
|.+..+.++......++..++.++.|+++||+|||+.... .........+.. .+. ...+.. ..
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~------~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~l 123 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI------AAVLFFISALGS-AWPEFGFTSIGPDNTGYVPEF 123 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH------HHHHHHHHHHHH-HhhccccccccccchhHHHHH
Confidence 8888999999999999999999999999999998732111 001111111111 110 001111 11
Q ss_pred HHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhc--------ccCcchHHHHHHHH
Q 022198 212 VLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYIL--------QHGSWDDVFKVSVG 281 (301)
Q Consensus 212 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~--------~~~~~~~~f~~~~~ 281 (301)
+.. ...+++.+.. .+...+...|..| ++|+.+.++.+....+|..+++.+.+.+. ++.||+..|.+.++
T Consensus 124 ~~~R~l~G~~~g~~-~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~ 202 (479)
T PRK10077 124 VIYRIIGGIGVGLA-SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAI 202 (479)
T ss_pred HHHHHHHhhhHhHH-hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHH
Confidence 111 1112222211 1222334445554 68999999988888888888876655443 34589999988766
Q ss_pred HHHHHHHH
Q 022198 282 LYLVGTAV 289 (301)
Q Consensus 282 ~~~v~~~~ 289 (301)
+.++..+.
T Consensus 203 ~~~~~~~~ 210 (479)
T PRK10077 203 PALLFLML 210 (479)
T ss_pred HHHHHHHH
Confidence 66655443
No 193
>PTZ00207 hypothetical protein; Provisional
Probab=98.73 E-value=1.1e-06 Score=84.01 Aligned_cols=156 Identities=10% Similarity=0.056 Sum_probs=87.7
Q ss_pred HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc
Q 022198 125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH 204 (301)
Q Consensus 125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (301)
..|++..+.|. +++++|+|..+.+.+.... .......+..|+++||+|+|... .++.+...+.......
T Consensus 42 ~~y~fsv~s~~-L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vl---------lig~ll~~iG~ll~al 110 (591)
T PTZ00207 42 FMYAFNLISGA-MQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIF---------VLSMTVFCLGTLLFAL 110 (591)
T ss_pred HHHHHHHHHHH-HHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHH---------HHHHHHHHHHHHHHHH
Confidence 45666666665 6788999999999887653 34445667789999999976321 1111111111111111
Q ss_pred c------CChHHHH-HHHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhH-HHhHhhhhcccCcchHHH
Q 022198 205 V------DSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVF-GTAATGYILQHGSWDDVF 276 (301)
Q Consensus 205 ~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~-~~~l~g~l~~~~~~~~~f 276 (301)
. .+..... .....+.+.+.+. ........+..|++||.+.|+......+|+++ ++...+++.+ +|...|
T Consensus 111 a~~~~i~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~f 187 (591)
T PTZ00207 111 TFQEVIEGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYF 187 (591)
T ss_pred HhcccccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHH
Confidence 1 1222211 1112222221111 11122233456889999999999999999986 4444444432 477777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 022198 277 KVSVGLYLVGTAVWNLFS 294 (301)
Q Consensus 277 ~~~~~~~~v~~~~~~~~~ 294 (301)
.+.++..++..+++..+.
T Consensus 188 l~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 188 FFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 777666666555555553
No 194
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.72 E-value=4.4e-07 Score=82.93 Aligned_cols=171 Identities=13% Similarity=0.015 Sum_probs=94.8
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh--hhhHHHHHHHHHHH-HHHHHHHHHcCCcHHHHHHHHHHHh
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC--VLPWLTMAFSANLG-GWIADTLVSKGLSVTTVRKIMQSIG 191 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~--~~~~i~~~~g~~~~-G~l~Dr~~~r~~~~~~~~~~~~~~~ 191 (301)
....++.+...+......+|.|+++. |+|.++.|++. .++.+...+.+++. ++.+||+|||+ .++....
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-------~~i~~~~ 77 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLRED-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-------SWVLPMQ 77 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-------hHHHHHH
Confidence 34455666666666778999999865 99999999973 55566666666666 55788887663 2211111
Q ss_pred hHHH--HHHHHHhhccCChHHHHHHHHHHHhhhhhhhcc-hhhh-hhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 192 FLGP--AFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSG-LYSN-HQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
+... ......+....+.............+....+.. .-+. .++..++.++...+.......+|..+++...+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 78 CLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111111112111111111111111111110 0111 12233445576666666666788888888888999
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 268 QHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 268 ~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
++.||+..|.+.+++.++..+....+
T Consensus 158 ~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 158 GKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99899999999887776655554333
No 195
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.70 E-value=1.4e-06 Score=80.49 Aligned_cols=133 Identities=14% Similarity=0.002 Sum_probs=83.0
Q ss_pred HhHHHHHHHHhCCCcch-hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChH
Q 022198 131 TWMPTYYNQVLHFNLTE-SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPA 209 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~-~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (301)
.+...++.+++|+|..+ .|.+......+..+..+.+|+++||+|.|+ .+. ...+...++........+..
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~--------vL~-l~~l~Wsl~t~L~~fa~Sl~ 116 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP--------VLV-LQALSFVCVWLLLLLGTSVW 116 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH--------HHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44556888899999999 999999999999999999999999998652 221 22221211111111111221
Q ss_pred HHHHH-HHHHHhhhhhhhcchhhhhh-ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHH
Q 022198 210 MAVLC-MACSQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDV 275 (301)
Q Consensus 210 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~ 275 (301)
.+.++ +..+.+-+.. . ..+.... -.++++|+.+.++.+....+|..+++.+.+++ ...||+.-
T Consensus 117 ~L~i~R~llGvaEA~~-~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y 181 (511)
T TIGR00806 117 HMQLMEVFYSVTMAAR-I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHH-H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhH
Confidence 11111 1112111111 1 2222222 34567899999999999999999999999994 45567753
No 196
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.70 E-value=1.2e-07 Score=86.31 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=95.0
Q ss_pred hcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q 022198 107 LSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKI 186 (301)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~ 186 (301)
+||+.+|.....+++..+.+-....+.|.+|++..|+|.+|+|.+.+...+...+.+++.|.++||.+.|+.....
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~---- 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF---- 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH----
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH----
Confidence 4677888777777766666666788899999988899999999999999999999999999999999876422111
Q ss_pred HHHHhhHHHHHHH-HHhhc--cCChHHHHHHHHHHHhhhhhhhcchhhhh---hccCCCchHHHHHHHhHHHhhHHhHHH
Q 022198 187 MQSIGFLGPAFFL-TQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYSNH---QDIAPRYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 187 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
.....+..+.+. ..+.. ..+.. +..+..+..++ +...+..... .|...++.+.-.|=.-..|.+|-+++.
T Consensus 80 -i~~l~~l~~pff~~v~~pll~~n~~--lg~iig~i~l~-~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s 155 (412)
T PF01306_consen 80 -IAILLLLFGPFFIYVFGPLLQSNFW--LGAIIGGIYLG-LVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIAS 155 (412)
T ss_dssp -HHHHHHTCHHHHHHTHHHHHHTT-H--HHHHHTTTTTT-TTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHH
Confidence 111111111111 11110 11111 11111111111 1111111111 111122334445556688889999999
Q ss_pred hHhhhhcccCcchHHHHHHHHHHHH
Q 022198 261 AATGYILQHGSWDDVFKVSVGLYLV 285 (301)
Q Consensus 261 ~l~g~l~~~~~~~~~f~~~~~~~~v 285 (301)
.+.|.+.+. +-+..|++..+..++
T Consensus 156 ~~~G~L~~i-~p~~~fwi~s~~~~i 179 (412)
T PF01306_consen 156 LLAGILFNI-NPNIIFWIASAAAII 179 (412)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhheeeee-CccHHHHHHHHHHHH
Confidence 999999876 234566655444333
No 197
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.68 E-value=1.8e-06 Score=79.94 Aligned_cols=60 Identities=23% Similarity=0.206 Sum_probs=49.5
Q ss_pred HHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 117 VSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 117 ~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
+..++....+-.....++.++++++|+|..+.|++.....++..++++..|+++||+++|
T Consensus 9 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~ 68 (418)
T TIGR00889 9 FMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSA 68 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444334444568899999999999999999999999999999999999999999764
No 198
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.66 E-value=3.4e-06 Score=78.34 Aligned_cols=148 Identities=13% Similarity=0.096 Sum_probs=75.9
Q ss_pred HHhHHHHHHHHhC---CCcchh---hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198 130 LTWMPTYYNQVLH---FNLTES---GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 203 (301)
Q Consensus 130 ~~wlp~~l~~~~g---~s~~~~---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
......++.++++ .+..+. +.......++..+|.+++|+++||+|||+. + .......++......
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~--------l-~~~~~~~~~~~~~~~ 111 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS--------M-LISVCMMCFGSLVIA 111 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--------H-HHHHHHHHHHHHHHh
Confidence 4555567777764 444432 233344456667999999999999997631 1 111211211111111
Q ss_pred ccCCh--------HHHHHH-HHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc------
Q 022198 204 HVDSP--------AMAVLC-MACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL------ 267 (301)
Q Consensus 204 ~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~------ 267 (301)
..++. ...+.+ ...+.+.+.. .+.......|. ++++|+...++.+.....|..+++.+...+.
T Consensus 112 ~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 190 (432)
T PRK10406 112 CLPGYETIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA 190 (432)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 11111 111111 1122222211 12222334454 4578898888776666566566655443332
Q ss_pred --ccCcchHHHHHHHHHHHHHH
Q 022198 268 --QHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 268 --~~~~~~~~f~~~~~~~~v~~ 287 (301)
+..||+..|.+.++..++..
T Consensus 191 ~~~~~gWr~~F~i~~~~~ll~~ 212 (432)
T PRK10406 191 ELREWGWRIPFALGAVLAVVAL 212 (432)
T ss_pred HHhccchHHHHHHHHHHHHHHH
Confidence 24689999988766665543
No 199
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.63 E-value=4.3e-06 Score=78.95 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=78.0
Q ss_pred HHhHHHHHHHHhCCCcchh-hhH-----hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198 130 LTWMPTYYNQVLHFNLTES-GLF-----CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 203 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~~-~~~-----~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
..+.-.++.++++.+.++. +.. .....++..+|.++.|+++||+|||+. + ....+..++......
T Consensus 35 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~--------l-~~~~~l~~i~~~~~a 105 (490)
T PRK10642 35 YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI--------L-AITIVIMSISTFCIG 105 (490)
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--------H-HHHHHHHHHHHHHHH
Confidence 3344456777776444331 221 244567889999999999999998731 1 122222222222122
Q ss_pred ccCChHH--------HHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc------
Q 022198 204 HVDSPAM--------AVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL------ 267 (301)
Q Consensus 204 ~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~------ 267 (301)
..++... .+.+ ...+++.+.. .+.......|.. +++||...++.+....+|..+++.+...+.
T Consensus 106 ~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~ 184 (490)
T PRK10642 106 LIPSYATIGIWAPILLLLCKMAQGFSVGGE-YTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA 184 (490)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhHhHhh-HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 2223211 1111 1112222211 122223344555 478899888887766666666665443332
Q ss_pred --ccCcchHHHHHHHHHHHHHHH
Q 022198 268 --QHGSWDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 268 --~~~~~~~~f~~~~~~~~v~~~ 288 (301)
++.||+..|.+.+...+++.+
T Consensus 185 ~~~~~gWR~~f~i~~~~~l~~~~ 207 (490)
T PRK10642 185 NFLDWGWRIPFFIALPLGIIGLY 207 (490)
T ss_pred HhcCccHHHHHHHHHHHHHHHHH
Confidence 246899999886655554433
No 200
>PRK09952 shikimate transporter; Provisional
Probab=98.62 E-value=6.3e-06 Score=76.69 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=77.8
Q ss_pred HHHhHHHHHHHHh--CCCcchhhhHh-----hhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHH
Q 022198 129 LLTWMPTYYNQVL--HFNLTESGLFC-----VLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQ 201 (301)
Q Consensus 129 ~~~wlp~~l~~~~--g~s~~~~~~~~-----~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (301)
+....|.++.+++ +.++.+ +... ....++..+|.++.|+++||+|||+ .+ .......++....
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~--------~l-~~~~~~~~~~~~~ 110 (438)
T PRK09952 41 YGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR--------ML-MLTVWMMGIATAL 110 (438)
T ss_pred HHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH--------HH-HHHHHHHHHHHHH
Confidence 3344555666655 677663 4432 2344567789999999999999762 11 1222222222222
Q ss_pred hhccCChH--------HHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcc---
Q 022198 202 LSHVDSPA--------MAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ--- 268 (301)
Q Consensus 202 ~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~--- 268 (301)
....++.. ..+.+ ...+.+.+.. .+.......|.. +++|+...+..+....+|..+++.+...+..
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~ 189 (438)
T PRK09952 111 IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGE-WGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTT 189 (438)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHhhhccc-HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22222321 11111 1112222211 111123334544 4678888888777777777777766655442
Q ss_pred -----cCcchHHHHHHHHHHHHH
Q 022198 269 -----HGSWDDVFKVSVGLYLVG 286 (301)
Q Consensus 269 -----~~~~~~~f~~~~~~~~v~ 286 (301)
+.||+..|.+.++..+++
T Consensus 190 ~~~~~~~gWr~~f~~~~~~~l~~ 212 (438)
T PRK09952 190 DEQFLSWGWRIPFLFSIVLVLIA 212 (438)
T ss_pred HHHhhccChHHHHHHHHHHHHHH
Confidence 358999998776554443
No 201
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.8e-08 Score=86.90 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=109.2
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
+.+.+..+..=-|.+-.-+ .=.++.+|.+.++.|++.....+...+.+|++|+++||+-|+.+.. ++...
T Consensus 38 l~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~---------vG~~i 107 (493)
T KOG1330|consen 38 LCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIA---------VGIFI 107 (493)
T ss_pred HHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEe---------eHHHH
Confidence 3444444433344443322 3467888999999999999999999999999999999997664322 22221
Q ss_pred HHHHHHHhhccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhccc-Cc
Q 022198 195 PAFFLTQLSHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQH-GS 271 (301)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~ 271 (301)
..+++...+.+..-+..+++ ...+.|-..+. +..-+...|..|+ +|+...++.|.+...|+++|-.....+.++ +.
T Consensus 108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~-~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~ 186 (493)
T KOG1330|consen 108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYS-PIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhc-ccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccc
Confidence 22222111122111122222 11122222221 2223455677774 799999999999999999887777777777 44
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198 272 WDDVFKVSVGLYLVGTAVWNLFSTGE 297 (301)
Q Consensus 272 ~~~~f~~~~~~~~v~~~~~~~~~~~~ 297 (301)
|+++|...+++.+++.++..++.+++
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP 212 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREP 212 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCc
Confidence 99999998888888877776775443
No 202
>PRK15075 citrate-proton symporter; Provisional
Probab=98.58 E-value=6.9e-06 Score=76.29 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=81.8
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHh-hhh-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFC-VLP-----WLTMAFSANLGGWIADTLVSKGLSVTTVRKIM 187 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~-~~~-----~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~ 187 (301)
..++..++..+-...+....| .++++++.+..+.+... ... .+...++.++.|+++||+|||+. .+
T Consensus 19 ~~~~~~~~~~~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-------l~ 90 (434)
T PRK15075 19 RVTSGNFLEMFDFFLFGFYAT-AIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG-------LI 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH-------HH
Confidence 334444444444445555666 56667898887754332 211 22234788999999999998731 11
Q ss_pred HHHhhHHHHHHHHHhhccCChHH--------HHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHh
Q 022198 188 QSIGFLGPAFFLTQLSHVDSPAM--------AVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGV 257 (301)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~ 257 (301)
.......+........++... .+.. ...+.+.+.. .+.......|.. +++|+.+.++.+...+++..
T Consensus 91 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 91 --VTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred --HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 111111111111222222211 1111 1111111111 111223344554 57899999998888887777
Q ss_pred HHHhHhhhhc--------ccCcchHHHHHHH
Q 022198 258 FGTAATGYIL--------QHGSWDDVFKVSV 280 (301)
Q Consensus 258 ~~~~l~g~l~--------~~~~~~~~f~~~~ 280 (301)
+++.+.+.+. ++.||+..|.+..
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 7777666552 4568999888643
No 203
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.56 E-value=5.9e-06 Score=78.84 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=92.5
Q ss_pred hhcChhHHHHHHHHHhhHHHHHH-HH--HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198 106 ILSKPPVWALIVSHFCHNWGTFI-LL--TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 182 (301)
Q Consensus 106 ll~~~~~~~~~~~~~~~~~~~~~-~~--~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~ 182 (301)
-+++|++...+....+.....|. +. .=..+++.++.|=+ .+..++.....++..++.++.|+++|.+|||-.
T Consensus 36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~---- 110 (599)
T PF06609_consen 36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF---- 110 (599)
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH----
Confidence 35677777654433322222222 21 22335666777776 556666777778999999999999999997621
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH-HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHH
Q 022198 183 VRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC-SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGT 260 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~ 260 (301)
...+.+...+-........+....+.-.++ +.+.+.. ........|..| |.|..+.++.....-.....+|
T Consensus 111 -----~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~ 183 (599)
T PF06609_consen 111 -----FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISP 183 (599)
T ss_pred -----HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccH
Confidence 111111111111111122333333322221 2221111 111222345555 6787776655543333334566
Q ss_pred hHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 261 AATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 261 ~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+...+..+.+|++.|++..+...++++...++
T Consensus 184 ~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 184 LIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 666556556789999988777777665554444
No 204
>TIGR00898 2A0119 cation transport protein.
Probab=98.50 E-value=1.2e-06 Score=82.85 Aligned_cols=145 Identities=10% Similarity=0.012 Sum_probs=87.5
Q ss_pred hHHHHHHHHhCCC---cchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 132 WMPTYYNQVLHFN---LTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 132 wlp~~l~~~~g~s---~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
..|+ +++++|++ ..+.++......++..++.++.|+++||+|||+. +. ...+..++.........+.
T Consensus 111 ~~~~-i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~--------~~-~~~~~~~i~~~~~~~~~~~ 180 (505)
T TIGR00898 111 FSST-IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV--------LL-LSTLVTAVSGVLTAFSPNY 180 (505)
T ss_pred cccc-EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH--------HH-HHHHHHHHHHHHHHHcccH
Confidence 4444 45678998 8889999999999999999999999999997621 11 1122122221111223333
Q ss_pred HHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198 209 AMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 286 (301)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~ 286 (301)
...+.+ ...+++.+.. .+.......|..| +.|+.+.++.+....+|..++|.+.+.+.+ |+..|.+.++..++.
T Consensus 181 ~~~~~~r~l~G~~~~~~-~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~ 256 (505)
T TIGR00898 181 TVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLF 256 (505)
T ss_pred HHHHHHHHHHHhhccch-HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH
Confidence 222222 1122222211 1222334445554 678998888877777788888877655433 888888877666665
Q ss_pred HHHH
Q 022198 287 TAVW 290 (301)
Q Consensus 287 ~~~~ 290 (301)
.+.+
T Consensus 257 ~~~~ 260 (505)
T TIGR00898 257 FLLS 260 (505)
T ss_pred HHHH
Confidence 5444
No 205
>PRK09669 putative symporter YagG; Provisional
Probab=98.48 E-value=1.2e-06 Score=81.54 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198 123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173 (301)
Q Consensus 123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~ 173 (301)
+.....+.+|++.|+.+++|+|+.++|.+..+.-+.-.+..++.|+++||.
T Consensus 22 ~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~ 72 (444)
T PRK09669 22 NLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRT 72 (444)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecC
Confidence 444556678999999999999999999999999999999999999999994
No 206
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.48 E-value=5.8e-06 Score=77.66 Aligned_cols=174 Identities=17% Similarity=0.132 Sum_probs=96.5
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 193 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~ 193 (301)
.....++++... +....-++.++++++|+|.++.+.+.....+...+ .++.|.++||+...+.+ ||..+.+..+
T Consensus 30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~r----Rr~~l~~~~~ 103 (468)
T TIGR00788 30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYT----KRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcc----chHHHHHHHH
Confidence 344456676666 66778888999999999999998888877777776 45599999999521110 2222222222
Q ss_pred HH-HHHHHHhhccCC-hHHHHHH-HHHHHhhhhh--hhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 194 GP-AFFLTQLSHVDS-PAMAVLC-MACSQGTDAF--SQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 194 ~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
.. +..........+ ......+ ....++.... ..-..+....+..++..+...+.......+|..+++.+.|.+.+
T Consensus 104 l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222222222222 2122211 1111111110 11112221111111222333333344445788999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 269 HGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 269 ~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.+|+..|.+.+++.++..+....+
T Consensus 184 ~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 184 KTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhc
Confidence 8889999988877777764443333
No 207
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.48 E-value=2.7e-06 Score=82.80 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=92.7
Q ss_pred HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc----------
Q 022198 135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH---------- 204 (301)
Q Consensus 135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 204 (301)
+-+++++|++.+++|++.+...++..++.++.+++.||.+||++..... .+..++.+..++.-.....
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~--ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC--AIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH--HHHHHHHHHHhChHHhcCCcccccccccc
Confidence 4577889999999999999999999999999999999998775433321 1112222211111100000
Q ss_pred -------------c-----------------C--ChHHHHHHHH-HHHhhhhh-hhcchhhhhhccC-CCchHHHHHHHh
Q 022198 205 -------------V-----------------D--SPAMAVLCMA-CSQGTDAF-SQSGLYSNHQDIA-PRYSGVLLGLSN 249 (301)
Q Consensus 205 -------------~-----------------~--~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-p~~~g~a~g~~~ 249 (301)
. . +....+.++. ...|++.. ..+...+...|.. ++.++...++.+
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 0 0 1011111111 11222211 1111223444544 568999999999
Q ss_pred HHHhhHHhHHHhHhhhhcccC----------------------cchHHHHHHHHHHHHHHHHHHhh
Q 022198 250 TAGVLAGVFGTAATGYILQHG----------------------SWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 250 ~~~~lgg~~~~~l~g~l~~~~----------------------~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
....+|..+|+.++|++.+.. .|...|.+.+++.++..+.+..+
T Consensus 215 ~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 215 SIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred HHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999987541 25556777666666554444444
No 208
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.46 E-value=2.2e-05 Score=74.45 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=78.0
Q ss_pred CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCC----hHHHHHH-HHH
Q 022198 143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDS----PAMAVLC-MAC 217 (301)
Q Consensus 143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 217 (301)
.+..+.+++.....++..++.++.|+++||+|||+.... ..+......+ ......... ....+.. ...
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~------~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM------ELIIMIIATV-ASGLSPGSSPKSVMATLCFWRFWL 125 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH------HHHHHHHHHH-HHHHccCcccchHHHHHHHHHHHH
Confidence 445566788888899999999999999999997631100 0111111111 111111111 1111111 122
Q ss_pred HHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc-----------------------cCcch
Q 022198 218 SQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ-----------------------HGSWD 273 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~-----------------------~~~~~ 273 (301)
+++.+.. .+.......|..| +.|+.+.++.+....+|..+++.+...+.. ..+|+
T Consensus 126 G~~~g~~-~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR 204 (502)
T TIGR00887 126 GVGIGGD-YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWR 204 (502)
T ss_pred HHHHhhh-hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHH
Confidence 2222221 1222334455554 789999999999999999888887765431 13699
Q ss_pred HHHHHHHHHHHHHHH
Q 022198 274 DVFKVSVGLYLVGTA 288 (301)
Q Consensus 274 ~~f~~~~~~~~v~~~ 288 (301)
..|.+.+...++..+
T Consensus 205 ~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 205 ILIGFGAVPALLALY 219 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888766555555433
No 209
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.41 E-value=3.9e-06 Score=78.36 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=100.2
Q ss_pred HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHh---hccCChHHHHHHH
Q 022198 139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQL---SHVDSPAMAVLCM 215 (301)
Q Consensus 139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 215 (301)
.++++|.+|.+++......|..++.+.+|++.||+|.|+. +. ...+..++..... .......+++.=.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v--------~~-~~~~~sa~~t~l~P~aa~~~~~~~~~~R~ 136 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRV--------FF-ISGLISALLTLLTPLAASIGFYLLLVLRF 136 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHH--------HH-HHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3688999999999999999999999999999999996632 11 1111122211111 1111111111111
Q ss_pred HHHHhhhhhhhcchhh-hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 216 ACSQGTDAFSQSGLYS-NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.-+++.+ ...+.... ..+-.+|++|+...++.....++|..++-.+.|++.+. .||+.+|.+.+++.++-.++|..+
T Consensus 137 lqGl~~g-~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 137 LQGLGQG-VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HhHHHHh-HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11111111 12345678999999999999899999999999999999 999999999999988888888888
Q ss_pred cCCccc
Q 022198 294 STGEKV 299 (301)
Q Consensus 294 ~~~~~~ 299 (301)
.+++++
T Consensus 216 ~~d~P~ 221 (466)
T KOG2532|consen 216 YSDSPS 221 (466)
T ss_pred hcCCcc
Confidence 666554
No 210
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.39 E-value=4.7e-06 Score=78.40 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198 120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173 (301)
Q Consensus 120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~ 173 (301)
+..+.....+.+|++.|+++..|+|+...|.+..+.-+.-++..++.|+++||.
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t 69 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNT 69 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcC
Confidence 334555666788999999999999999999999998899999999999999954
No 211
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.33 E-value=5.1e-05 Score=68.58 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=39.9
Q ss_pred hcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhc--------ccCcchHHHHHHHHHHHHHHHHH
Q 022198 234 QDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYIL--------QHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 234 ~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~--------~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
.|. ++++|+...++.+....+|..+++.+.+.+. +..+|+..|.+.+.+.+++....
T Consensus 122 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 187 (394)
T TIGR00883 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR 187 (394)
T ss_pred hhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 344 4568899999888888888888887765543 24578888887766665554443
No 212
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.31 E-value=2.1e-05 Score=69.64 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=97.7
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA 216 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (301)
+++++|+|.+.+|++..++.++..+.+++..+++.|+|..+ .......++......-. ....+.+...-..
T Consensus 38 Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er-------~l~~~Llli~~G~~iR~--~~~~~~L~~gt~l 108 (395)
T COG2807 38 IRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER-------SLFLALLLIAAGILIRS--LGGLPLLFLGTLL 108 (395)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH-------HHHHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 56788999999999999999999999999999999998652 11111111111111111 1111111111111
Q ss_pred HHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-CcchHHHHHHHHHHHHHHHHHHh
Q 022198 217 CSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~-~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
.+.+....+. -+-+..++..||+.+..+|+..+.-+.++++++.+.-.+.++ +||+..+.+.+...+++.++|.-
T Consensus 109 ~G~gIav~nV-LLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 109 AGAGIAVINV-LLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHhhHHHHHH-hhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 1222221111 112345677899999999999999999999999999888888 48999998888888888877743
No 213
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.29 E-value=2.8e-06 Score=78.75 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHH----HHHHcCCcHHHHHHHHHHHhhHHHH
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD----TLVSKGLSVTTVRKIMQSIGFLGPA 196 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D----r~~~r~~~~~~~~~~~~~~~~~~~~ 196 (301)
..+........|++.|+++..|+++...+.+.....+..++..|+.|+++| |+|||+.. +. .+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~-------~l-~g~i~~~ 83 (428)
T PF13347_consen 12 GYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW-------IL-IGAILLA 83 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE-------ee-hhhHHHH
Confidence 334445556779999999999999999999999888999999999999999 67766322 11 1111111
Q ss_pred HHH-HHh-h-c-cCCh---HHHHHHHHHHHhhh-hhhhcchhhhhhccCC--CchHHHHHHHhHHHhhHHhHHHhHhhhh
Q 022198 197 FFL-TQL-S-H-VDSP---AMAVLCMACSQGTD-AFSQSGLYSNHQDIAP--RYSGVLLGLSNTAGVLAGVFGTAATGYI 266 (301)
Q Consensus 197 ~~~-~~~-~-~-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p--~~~g~a~g~~~~~~~lgg~~~~~l~g~l 266 (301)
+.. ..+ . . ..+. ........+.+... .+...+..+...|..+ ++|....+..+....+|+.+...+.+.+
T Consensus 84 ~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l 163 (428)
T PF13347_consen 84 LSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL 163 (428)
T ss_pred HHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111 111 1 1 1111 11111111111111 1111222334445443 5788888887777777776666666666
Q ss_pred ccc-C------cchHHHHHHHHHHHHHHHHHHhhc
Q 022198 267 LQH-G------SWDDVFKVSVGLYLVGTAVWNLFS 294 (301)
Q Consensus 267 ~~~-~------~~~~~f~~~~~~~~v~~~~~~~~~ 294 (301)
.+. + +|.....+.+++.+++.++.....
T Consensus 164 ~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ 198 (428)
T PF13347_consen 164 VSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFV 198 (428)
T ss_pred hhhhccCccchHHHHHHHHHHHHHHHHhhhhhhee
Confidence 644 1 466666666666666655544443
No 214
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=4.2e-06 Score=74.83 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=93.2
Q ss_pred hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 022198 141 LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQG 220 (301)
Q Consensus 141 ~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (301)
++-+.++.|++.....+.+.+.+++.|.+.||+|+|- .+.+++.........+...++- ..+...=...+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~i---------pm~~Gl~vmf~sTilFafg~sy-~~l~vAR~LQg 170 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKI---------PMVAGLFVMFLSTILFAFGNSY-PMLFVARSLQG 170 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhcccc---------HHHHHHHHHHHHHHHHHHcchh-HHHHHHHHHhh
Confidence 3445678899888888999999999999999999662 2223333222222222222222 11111111222
Q ss_pred hh-hhhhcchhhhhhccCCC--chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH-HHHHhhcC
Q 022198 221 TD-AFSQSGLYSNHQDIAPR--YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT-AVWNLFST 295 (301)
Q Consensus 221 ~~-~~~~~~~~~~~~~~~p~--~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~-~~~~~~~~ 295 (301)
.+ ++....-.+...+.+|+ +|+.+.|+.-++..+|-.+||..+|.+-|..|...-|.+++++.++-. +.+..++.
T Consensus 171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 22 22222223444566664 579999999999999999999999999999999999999887777643 44444443
No 215
>PRK11462 putative transporter; Provisional
Probab=98.18 E-value=6.1e-05 Score=70.62 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=89.7
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHH-HHH
Q 022198 123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFF-LTQ 201 (301)
Q Consensus 123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ 201 (301)
+..+....+|++.|+.+..|+++..+|.+..+.-+-=++.-|+.|+++||...|- .+.|.++.. +.+..++. ...
T Consensus 22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~---Gr~rp~il~-g~i~~~i~~~ll 97 (460)
T PRK11462 22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRW---GKFRPWVLF-GALPFGIVCVLA 97 (460)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCC---CCcchhHhH-HHHHHHHHHHHH
Confidence 4445556789999999999999999999999888889999999999999752210 011333322 21111111 111
Q ss_pred h-hccCCh-HHHHHHHHH--HHhhh-hhhhcchhhhhhcc--CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc-----
Q 022198 202 L-SHVDSP-AMAVLCMAC--SQGTD-AFSQSGLYSNHQDI--APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH----- 269 (301)
Q Consensus 202 ~-~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~--~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~----- 269 (301)
+ ....+. ...+..... .+... .+...+..+...|. .+++|....++-...+.+|+.+++.+...+...
T Consensus 98 f~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~ 177 (460)
T PRK11462 98 YSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDN 177 (460)
T ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 1 111111 111111111 11111 11112223333343 356898888988888888887777765544432
Q ss_pred --CcchHHHHHHHHHHHHHHHH
Q 022198 270 --GSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 270 --~~~~~~f~~~~~~~~v~~~~ 289 (301)
.+|.....+.+++.+++.++
T Consensus 178 ~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 178 KPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 24555444555554454433
No 216
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.16 E-value=4.5e-06 Score=63.81 Aligned_cols=61 Identities=25% Similarity=0.409 Sum_probs=54.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHH
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVW 62 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~ 62 (301)
|....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..|||+.|++.+.+.++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999877766554
No 217
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.15 E-value=1.2e-05 Score=71.57 Aligned_cols=128 Identities=16% Similarity=0.077 Sum_probs=82.7
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
..-|.-.-..+..+-+...+|++-+.+.++..+.++..|.++||+|||. ++...+++.++.....+.+.+-
T Consensus 51 ~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp---------vll~c~~~va~s~ll~~~S~~F 121 (451)
T KOG2615|consen 51 MVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP---------VLLACLIGVALSYLLWALSRNF 121 (451)
T ss_pred hhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555556677888888889999999999999999999763 2223344444444444443332
Q ss_pred HHHHHHHHH--HHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 209 AMAVLCMAC--SQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 209 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
..+.+. ..|..-.+.+..-+...|+. +++|+.+++.++....+|-.+||.++|++..
T Consensus 122 ---~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 122 ---AAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ---HHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 112221 11111112222334455664 4789999999999999999999999999987
No 218
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.15 E-value=3.6e-05 Score=71.77 Aligned_cols=252 Identities=16% Similarity=0.136 Sum_probs=142.2
Q ss_pred chhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 3 AMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
.+.+++++....++|....|+.+.....+..+++.+++.+.+..|==.+|++..+..++.....+...||+-+ +++.++
T Consensus 132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~-~~~~~~ 210 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ-EKERSD 210 (463)
T ss_pred hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC-cccccc
Confidence 4568899999999999999999999999999999999999999888899998666655543333334444322 111111
Q ss_pred HHHHHHHhccCCCCCCCCCChHHh--h-cChhHHHHHHHHHhhHHHHHHHHH-hHHHHHHHHhCCCcchhhhHhhhhHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLI--L-SKPPVWALIVSHFCHNWGTFILLT-WMPTYYNQVLHFNLTESGLFCVLPWLT 158 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l--l-~~~~~~~~~~~~~~~~~~~~~~~~-wlp~~l~~~~g~s~~~~~~~~~~~~i~ 158 (301)
++.... .............++.. . .+|..+.+....+.....-.+-.. -++.|+...+|++..+.+.+.....+.
T Consensus 211 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~ 289 (463)
T KOG2816|consen 211 ATLREL-TPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSIL 289 (463)
T ss_pred cccccc-CCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHH
Confidence 000000 00000000000111111 1 223344434333333322221111 335678888999999999888888888
Q ss_pred HHHHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHH-HHHHHHHHHhhhhhhhcchhhhhh-c
Q 022198 159 MAFSANLGG-WIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAM-AVLCMACSQGTDAFSQSGLYSNHQ-D 235 (301)
Q Consensus 159 ~~~g~~~~G-~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 235 (301)
..++..+.. .+...++.|+ ....++..-.+....+.....++. ........+ ..+..+..-+... .
T Consensus 290 ~~i~~l~~~~~l~~~l~~~~---------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~--~~~~~pa~~s~~s~~ 358 (463)
T KOG2816|consen 290 GIISQLLLLPLLSSILGEKR---------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL--AGIVFPAIRAFASIL 358 (463)
T ss_pred HHHHHHHHHHHHHHHHhhhh---------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh--hcchhHHHHhHHHhh
Confidence 888888887 7777776552 222333222222222222222222 221221111 1122222222222 2
Q ss_pred cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 236 IAPRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 236 ~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
..++.+|.+.++...+..+.+.++|.+-+.+.
T Consensus 359 v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 359 VSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred cccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 35678899999999999999999998887764
No 219
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.12 E-value=0.00016 Score=66.58 Aligned_cols=61 Identities=25% Similarity=0.268 Sum_probs=48.9
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
+...+++....+-....++|.|+++ .|+|..|+|.+++...+...+++++.|+++||..++
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~ 67 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA 67 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 3334444444455567889999986 599999999999999999999999999999998643
No 220
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.07 E-value=2.4e-05 Score=54.20 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=48.7
Q ss_pred HHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 119 HFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 119 ~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
+++...+...+..++|.|+++ .|+|+.++|.+..+..+...+++++.|+++||.+++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~ 65 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR 65 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 344444555678899999986 699999999999999999999999999999999865
No 221
>PRK09848 glucuronide transporter; Provisional
Probab=98.03 E-value=0.00012 Score=68.17 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
..+........+++.|+++..|+++.++|.+..+..+...+..++.|+++||.++|
T Consensus 19 ~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~ 74 (448)
T PRK09848 19 ANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTR 74 (448)
T ss_pred HhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCC
Confidence 33445555667888899999999999999999999999999999999999997543
No 222
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.02 E-value=6.6e-05 Score=71.02 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=93.9
Q ss_pred HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH
Q 022198 135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC 214 (301)
Q Consensus 135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (301)
..++++++.+.++++++..+..-......++.+.+.||+|.|. .+ .++.++.+..+.......+.....+.
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~--------v~-i~G~~v~~~g~~lssF~~~i~~l~lt 140 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT--------VM-IAGGLVAALGLLLSSFATSLWQLYLT 140 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH--------HH-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3466788999999999988887788888999999999998662 22 22222222222222222333233333
Q ss_pred HHH--HHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 215 MAC--SQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
... +.|++....+.. .......++.|+.+.|+......+|..+-|.+.-++.+..||+..+++.+.+.+-++..
T Consensus 141 ~gvi~G~G~~~~~~pai-viv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~ 216 (509)
T KOG2504|consen 141 FGVIGGLGLGLIYLPAV-VILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVA 216 (509)
T ss_pred HHHHhhccchhhhcchh-hhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 222 222222112222 22234567899999999999888999999999999999999999888876666554443
No 223
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.97 E-value=3e-05 Score=72.08 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=47.7
Q ss_pred hhhHhhcc--CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHH
Q 022198 5 NNILSKWV--PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 63 (301)
Q Consensus 5 ~~~i~~~~--p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~ 63 (301)
.+++.|.. .|++||...+.....-.+|.+++..++|.+.+..+.|..|.+.+++..+..
T Consensus 108 Da~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 108 DALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred hHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 34555555 334489999999999999999999999999999999999998777765543
No 224
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.95 E-value=0.00012 Score=69.62 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=86.2
Q ss_pred HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHH-HH
Q 022198 139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCM-AC 217 (301)
Q Consensus 139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 217 (301)
+..+.+.....+...+..+|..+|+++.|.++||+|||.. ....+...+++-.....+.+....+.+= ..
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~---------~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV---------LLVSLLLFIIFGILTAFAPNYWMFLIFRFLS 181 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHH---------HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4556667777888888899999999999999999987621 1122222222222222333333322221 11
Q ss_pred HHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHH
Q 022198 218 SQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+++.... ....+....|. .|++|+.+..+ ......++.+++...+++.. +|+..+++.....++..+.+
T Consensus 182 G~~~~~~-~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~ 251 (521)
T KOG0255|consen 182 GFFGSGP-LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLW 251 (521)
T ss_pred Hhhccch-hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 2211111 11122333454 57899999988 77778889999999999988 69998888777776665553
No 225
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0011 Score=59.92 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=76.6
Q ss_pred hHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh---ccCCh
Q 022198 132 WMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS---HVDSP 208 (301)
Q Consensus 132 wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 208 (301)
-+-+.+++.+++|..|++++......+..+..+..|++.+|++.|+ ..+ +++...++....+. ...+.
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~-------gi~--lgL~l~avg~~lF~pAa~~~~y 104 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA-------GIV--LGLLLYAVGAALFWPAASSKSY 104 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH-------HHH--HHHHHHHHHHHHHhhhhhhhhH
Confidence 3344577899999999999999999999999999999999999762 121 22222222211121 22222
Q ss_pred HH-HHHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 209 AM-AVLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 209 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
.. +..+...+.|.+.. .+.......... |+....=.++.+.+..+|+.++|.+++++.++
T Consensus 105 ~~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 105 GFFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 12 12122222222221 111112222333 33445556678888899999999999998883
No 226
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.93 E-value=0.00035 Score=68.10 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=94.3
Q ss_pred HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH-HHHHHhh
Q 022198 125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA-FFLTQLS 203 (301)
Q Consensus 125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 203 (301)
.+|++..-+-.|+++.+|++.+++..+.....-...+..+++|+++|++-+| ++.+....++... ..+..+.
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~-------~~tIl~~~ii~~lG~~llai~ 74 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGK-------FKTILYLSIVYVVGHALLSFG 74 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHhc
Confidence 4677777777899988999988888877766666778889999999987543 1222111111111 1111111
Q ss_pred cc---C-Ch--H-HHHHHHHHHHhhhhhhhcchhhhhhccC----CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---
Q 022198 204 HV---D-SP--A-MAVLCMACSQGTDAFSQSGLYSNHQDIA----PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH--- 269 (301)
Q Consensus 204 ~~---~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~--- 269 (301)
.. . .. . ..+.+..+..|.+.+ .+.+-+...+.. ++.+-....+....+++|+.+++.+.+++.++
T Consensus 75 a~~~~~~~~~~~~~l~gLaLia~G~Ggi-Kp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 75 AIPSSGHPLHDLLDLLGLALIALGTGGI-KPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC 153 (654)
T ss_pred cCcccccchHHHHHHHHHHHHHhhcccc-ccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 0 01 1 111111112222221 111111111211 22467788888999999999999999998744
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHHh
Q 022198 270 ----GSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 270 ----~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
.+|..+|.+.++..+++.+++..
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 26889999988888888776644
No 227
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.0008 Score=62.87 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=84.2
Q ss_pred HHhHHHHHHHHhCCCcchh------hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198 130 LTWMPTYYNQVLHFNLTES------GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 203 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~~------~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
..|.-.-+.++||.+.++. +.......+|+.+|.++.++++||+|||+.... + .+..+..++.....-
T Consensus 38 ~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~--~----~~l~~~~~~~~~~s~ 111 (485)
T KOG0569|consen 38 KSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLL--S----NLLAVLAALLMGLSK 111 (485)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH--H----HHHHHHHHHHHHHHH
Confidence 3566556677888665553 334566678999999999999999998732111 1 111112222211111
Q ss_pred ccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh-hhhccc-CcchHHHHHH
Q 022198 204 HVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT-GYILQH-GSWDDVFKVS 279 (301)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~-g~l~~~-~~~~~~f~~~ 279 (301)
......+++.- +..+...+ ......-.+..|..| +.||......+....+|-.++..++ -.++++ ..|...+.+-
T Consensus 112 ~~~~~e~li~GR~i~Gl~~g-l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 112 SAPSFEMLILGRLIVGLACG-LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HhhhHHHHHHHHHHHHHHhH-HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 11222222211 11111111 111111123457777 5799988888888777777775544 345555 4588777766
Q ss_pred HHHHHHHHHHHHh
Q 022198 280 VGLYLVGTAVWNL 292 (301)
Q Consensus 280 ~~~~~v~~~~~~~ 292 (301)
.+..++..+.+..
T Consensus 191 ~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 191 LIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHhc
Confidence 6666655544433
No 228
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.90 E-value=0.00046 Score=59.05 Aligned_cols=139 Identities=13% Similarity=0.183 Sum_probs=78.9
Q ss_pred HHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh
Q 022198 124 WGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS 203 (301)
Q Consensus 124 ~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (301)
...|.+..|-|. +++++|+|.+|...+.....++..+| +..|.+.||++.|...... ......+.. .+......
T Consensus 16 Gt~Y~Fs~yS~~-Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG--~~~~~~GY~--~~~l~~~~ 89 (250)
T PF06813_consen 16 GTTYTFSAYSPQ-LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIG--AVLGFVGYG--LLWLAVSG 89 (250)
T ss_pred CcccchhhhhHH-HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHH--HHHHHHHHH--HHHHHHhC
Confidence 357778888876 66789999999999998888888875 8889999999865211110 011111111 11111111
Q ss_pred ccC-ChHHHHHHHHHHHh-hh-hhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 204 HVD-SPAMAVLCMACSQG-TD-AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 204 ~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
... .+.+. +++....+ .+ .+..+.......+..|++||.+.|+.-....+++++-..+--.+.+.
T Consensus 90 ~i~~~~~~~-~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 90 RIPSLPVWL-MCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ccCccchHH-HHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 112 23332 23222221 22 11112212222234688999999998888877777766665555444
No 229
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.82 E-value=0.00078 Score=62.27 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=94.4
Q ss_pred CcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHH---HHhhhcc-CCCCCC--CCCCHHHHH
Q 022198 13 PVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT---VWLSKAH-SSPAED--PQLRPAEKK 86 (301)
Q Consensus 13 p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~---~~~~~~~-~~p~~~--~~~~~~~~~ 86 (301)
++++..+..+.+---=.+--++||.+.+.+....|.+..-.+.+...++-.. .++.+.+ +.|+-. ++.++++..
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~ 222 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESS 222 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccc
Confidence 4555566666666666677888999999998888888777766655443321 1222221 222210 000000000
Q ss_pred HHHh--ccCCCCC-----------CCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhh
Q 022198 87 LIVS--SCASKEP-----------VKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCV 153 (301)
Q Consensus 87 ~~~~--~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~ 153 (301)
.... +..++.+ ....+|++-+++|-++......++. ....++..-+-+|+.++ |+|+...|.+-.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~ 300 (432)
T PF06963_consen 223 SDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRG 300 (432)
T ss_pred ccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHH
Confidence 0000 0000000 0012466667777666544433332 22344456677899866 999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHc
Q 022198 154 LPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 154 ~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
...+.+..|+.+..++.+|+|-.
T Consensus 301 ~gav~Gl~gT~~~p~l~~riGlv 323 (432)
T PF06963_consen 301 LGAVFGLLGTWVYPWLMKRIGLV 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcch
Confidence 88899999999999999999843
No 230
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0025 Score=59.03 Aligned_cols=58 Identities=24% Similarity=0.543 Sum_probs=48.5
Q ss_pred CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHH
Q 022198 2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGT 60 (301)
Q Consensus 2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~ 60 (301)
|+.-++++|.+|+++ |-...++++.+.++|+.++|.+.+++.+.+||+..|.+. .++.
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a-avGm 195 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA-AVGM 195 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH-HHHH
Confidence 566788899996543 577888899999999999999999999999999999974 4443
No 231
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0014 Score=60.78 Aligned_cols=175 Identities=13% Similarity=0.102 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH
Q 022198 121 CHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT 200 (301)
Q Consensus 121 ~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 200 (301)
..+..+-....|+.-|+.+..|+|+..+|.+..+.=+.=++.-|+-|.++||..+| .-+.|.++.........++..
T Consensus 23 ~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r---~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 23 ASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSR---WGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccc---cccccHHHHHHhHHHHHHHHH
Confidence 34455556778999999999999999999998888888899999999999975322 112233433221211112222
Q ss_pred Hhhcc----CCh--HHHHHHHHHHHhhhhhhhcchhhhhhc--cCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---
Q 022198 201 QLSHV----DSP--AMAVLCMACSQGTDAFSQSGLYSNHQD--IAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH--- 269 (301)
Q Consensus 201 ~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~--- 269 (301)
.+... ... +..+..+....+-...+ -+..+...+ ..|++|....++-..+..+|+.+...+.+.+...
T Consensus 100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vn-iPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVN-IPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred HHcCCCcccCcchHHHHHHHHHHHHHHHhee-CchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22111 111 12222222221111111 111222223 3467888877777777777767666666665543
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHHhhcCCcccc
Q 022198 270 ----GSWDDVFKVSVGLYLVGTAVWNLFSTGEKVV 300 (301)
Q Consensus 270 ----~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~ 300 (301)
.||.....+.+++.. ..+.++...++||..
T Consensus 179 ~~~~~g~~~~~~~~~vi~~-i~~l~~~~~v~ER~~ 212 (467)
T COG2211 179 GDKALGYQGTALVLGVIGV-ILLLFCFFNVKERVV 212 (467)
T ss_pred CcchhhHHHHHHHHHHHHH-HHHHHHHHHhhcccC
Confidence 234333333332222 245556778888865
No 232
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.38 E-value=0.0054 Score=58.38 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=73.7
Q ss_pred hhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHH-HHHHHhhhhhh
Q 022198 147 ESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLC-MACSQGTDAFS 225 (301)
Q Consensus 147 ~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 225 (301)
+.+++.....++..+|.++.|+++|++|||.... +..+.+....+.. ....+....... ...+++.+...
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~------~~~~~~~iG~ii~---~~a~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLL------LAVVLFLIGAIII---ALAPSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHHHHH---HHhhhHHHHHHHHHHhccchhhhh
Confidence 3478888899999999999999999999873111 1111111111111 112233222221 22233333222
Q ss_pred hcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccC--cchHHHHHHHHHHHHHHHH
Q 022198 226 QSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHG--SWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 226 ~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~--~~~~~f~~~~~~~~v~~~~ 289 (301)
.. .-.+..|..| +.||...+..+....+|-.++ .+.|+..++. +|+..+.+..+..++-.+.
T Consensus 161 ~~-~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 161 VL-APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred hc-chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 11 1123456666 589998888777776555555 6666666653 7997776655555544444
No 233
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.36 E-value=0.0029 Score=58.88 Aligned_cols=150 Identities=23% Similarity=0.228 Sum_probs=84.0
Q ss_pred HHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHH---HHHHHhhcc-CChHH
Q 022198 135 TYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPA---FFLTQLSHV-DSPAM 210 (301)
Q Consensus 135 ~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~ 210 (301)
.|+++++|+|+++...+.....+-. ...++.|.++|-+--++.+ ||..+.++.+..+ ..+...... .+...
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~r----r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~ 88 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYR----RKPYMIIGWLLGAVSALVLALLPASESSAAI 88 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCc----chHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence 4788999999999888776554433 4678899999976311110 3333333332221 112211121 11222
Q ss_pred HHHHHH-HHHhhhh--hhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198 211 AVLCMA-CSQGTDA--FSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 211 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
...++. ..++... ...-+.+.......|+.+|...+.......+|+.++..+.|.+.++.+.+..|.+.+.+.++..
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 222211 1111110 0111122222223344577777788888889999999999999999888888887766666554
Q ss_pred HH
Q 022198 288 AV 289 (301)
Q Consensus 288 ~~ 289 (301)
+.
T Consensus 169 ~~ 170 (433)
T PF03092_consen 169 IV 170 (433)
T ss_pred HH
Confidence 33
No 234
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.33 E-value=0.0098 Score=55.66 Aligned_cols=126 Identities=21% Similarity=0.146 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhcchhhhhhc
Q 022198 156 WLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFSQSGLYSNHQD 235 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (301)
++...+.++.-|.++||+|||.... +.....+.+.+...... ++...... ..+......+..++...|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~------~~~~~~~l~~~~~~~~~-----~~~~~~~~-l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLL------LPLFGTILPALCLLFQG-----YWFFLLLG-LSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHH------HHHHHHHHhHHHHHHHH-----HHHhhhcc-cccchhhhhhhhhhheee
Confidence 4567788899999999999874221 11222333332222111 12211111 111111112334455556
Q ss_pred cCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 236 IAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 236 ~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
... +.|....|+.+..-..++.++|.+.+.+....|...+|.+..+..++..+-...+
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~ 198 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF 198 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence 544 5799999999998889999999999999999899999998887777765554444
No 235
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.24 E-value=0.097 Score=48.03 Aligned_cols=169 Identities=11% Similarity=0.096 Sum_probs=90.0
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC--CchhHHhhhhhHHHHHHHHhhhccCCCCC---CCC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG--WPSVFYSFGSLGTVWFTVWLSKAHSSPAE---DPQ 79 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g--WR~~F~~~g~l~~~~~~~~~~~~~~~p~~---~~~ 79 (301)
++++-...|+++--|+.+...++..+|-.++..+|-.+....+ -+.++++ .......+.++..++|..++. ++.
T Consensus 115 ~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i-sl~~~~~a~~~~~fLP~~~~S~~f~r~ 193 (412)
T PF01770_consen 115 YSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI-SLASVSLALLIALFLPMPKRSLFFHRK 193 (412)
T ss_pred HHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHcCCCCcccceecc
Confidence 4677788899999999999999999999999888887766332 2333333 222222222332333432221 111
Q ss_pred CCH------HHHHHH---Hhcc--CCCCCCC-C-----------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHH
Q 022198 80 LRP------AEKKLI---VSSC--ASKEPVK-T-----------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY 136 (301)
Q Consensus 80 ~~~------~~~~~~---~~~~--~~~~~~~-~-----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~ 136 (301)
.++ .+.+.. .++. ..+++.. + .++++..++|.++.-.+-..+...+++-+.+|.-..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~L 273 (412)
T PF01770_consen 194 PPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSL 273 (412)
T ss_pred CccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 000 000000 0000 0000000 0 023445677765543333334455777788888777
Q ss_pred HHHH--hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198 137 YNQV--LHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174 (301)
Q Consensus 137 l~~~--~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~ 174 (301)
..+. .+-+..-=|.+-+...+.+.++.+..|++..++.
T Consensus 274 W~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~ 313 (412)
T PF01770_consen 274 WDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD 313 (412)
T ss_pred HHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence 7654 1222333455556666777888888888855554
No 236
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.21 E-value=0.0042 Score=57.92 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=75.1
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh------cCCch-------hHHhhhhhHHHHHHHHhhhcc
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR------FGWPS-------VFYSFGSLGTVWFTVWLSKAH 71 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~------~gWR~-------~F~~~g~l~~~~~~~~~~~~~ 71 (301)
-+|+++..-.++|.|+++....+..+|..+||.++..+... +.+.. +=|+..++.++..+......+
T Consensus 151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 36788888889999999999999999999998887666542 12211 113333333332222222344
Q ss_pred CCCCCCCCC--CHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198 72 SSPAEDPQL--RPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG 149 (301)
Q Consensus 72 ~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~ 149 (301)
|.+++..+- +++|+. +.+.++.+..+.+|. ..+..+...+..+......-+-.+.+....++++-+++-
T Consensus 231 E~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~------~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av 301 (488)
T KOG2325|consen 231 EVYRGIIDKKKRSVEEE---KSDIEKVKKPKLDWV------AVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAV 301 (488)
T ss_pred ecccCccccccccchhh---ccchhhhccCChhHH------HHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHH
Confidence 544322111 111000 000000011122232 222333444445555555566677777788899988877
Q ss_pred hHhhhhH
Q 022198 150 LFCVLPW 156 (301)
Q Consensus 150 ~~~~~~~ 156 (301)
.+.....
T Consensus 302 ~~~gi~~ 308 (488)
T KOG2325|consen 302 LYNGITL 308 (488)
T ss_pred HhhhhHH
Confidence 7665543
No 237
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.18 E-value=0.042 Score=51.78 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=36.3
Q ss_pred HHHHHHHhHHHhhHHhHHHhHhhhhc-ccC-------cchHHHHHHHHHHHHHHHHHHhhcCCc
Q 022198 242 GVLLGLSNTAGVLAGVFGTAATGYIL-QHG-------SWDDVFKVSVGLYLVGTAVWNLFSTGE 297 (301)
Q Consensus 242 g~a~g~~~~~~~lgg~~~~~l~g~l~-~~~-------~~~~~f~~~~~~~~v~~~~~~~~~~~~ 297 (301)
+..++.....|++|+.+.-.+.-.+. ... ..+.++.+.++..++..+.+.++.++.
T Consensus 187 ~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~ 250 (477)
T PF11700_consen 187 GRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDR 250 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77888888888888887765543332 221 235677777777777777766664333
No 238
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.16 E-value=0.024 Score=50.36 Aligned_cols=274 Identities=11% Similarity=0.113 Sum_probs=125.9
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhH--HhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVF--YSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F--~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
++++-+-.+|+++-|+.|.--+..-.|-..|..++-.++..-.|-.-- .+ ..-...+..++-.++|. |++....++
T Consensus 116 ysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~-v~rSl~f~~ 193 (433)
T KOG3810|consen 116 YSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPR-VKRSLYFHR 193 (433)
T ss_pred hheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCC-Cchhhhhhc
Confidence 466777889999999999999998888888888888777654333222 11 11111212222233343 322111111
Q ss_pred HHHHHHHhccCCCCCC-CC------------CChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhh
Q 022198 83 AEKKLIVSSCASKEPV-KT------------IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESG 149 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~------------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~ 149 (301)
.+.+....+.++.++. +. .++.+..+||++..=.+-..+...++|-..+|.-....+. . +....
T Consensus 194 ~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~-~--~~~~~ 270 (433)
T KOG3810|consen 194 LEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEV-A--PNPAN 270 (433)
T ss_pred ccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhh-C--CCchh
Confidence 1111101110000000 00 1234455777644322222344568888888888877755 2 22222
Q ss_pred hH----hhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhh
Q 022198 150 LF----CVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMACSQGTDAFS 225 (301)
Q Consensus 150 ~~----~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (301)
-+ =++..+.++++.++.|++.-++-|+ +..++.++.+.-+-.+.....+.+.++.-+.....-..-.+.
T Consensus 271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~-------g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~ 343 (433)
T KOG3810|consen 271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRW-------GDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLT 343 (433)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHheeeccchh-------hHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhh
Confidence 22 2333445666777777776554332 223333333322222222233333322111111100000111
Q ss_pred hc-chhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-----------chHHHHHHHHHHHHHHHHHHhh
Q 022198 226 QS-GLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-----------WDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 226 ~~-~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-----------~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+ .......+...+.-|...|++...+-+ +=..+.-.++|.-| +..-|.+.+++++++.....+.
T Consensus 344 itiA~~~iA~nL~~e~~gLvFGiNTFvAl~---lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 344 ITIATFQIARNLSSELFGLVFGINTFVALI---LQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred hhHHHHHHHHhhhhhhheeeeehHHHHHHH---HHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 11 011122334455567777875554432 22333334556422 3345677788888875543333
No 239
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.003 Score=59.56 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=90.3
Q ss_pred HHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHHH
Q 022198 138 NQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMAC 217 (301)
Q Consensus 138 ~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (301)
+++.++...+-+....+..++..++.+.++.+.||+.- .+.+....+....+........+-+..+..=...
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l--------s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL--------SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLL 144 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh--------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 36777888888888899999999999999999999861 2223222222222221111111112222111111
Q ss_pred HHhhhhhhhcchhhhhh-ccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcc------cCcchHHHHHHHHHHHHHHHHH
Q 022198 218 SQGTDAFSQSGLYSNHQ-DIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ------HGSWDDVFKVSVGLYLVGTAVW 290 (301)
Q Consensus 218 ~~~~~~~~~~~~~~~~~-~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~------~~~~~~~f~~~~~~~~v~~~~~ 290 (301)
+. +.....+....... -..++++|.-.|+-++..++|+++|..+...+.+ ..||++.|.+-+++.++..++.
T Consensus 145 Gl-~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~ 223 (495)
T KOG2533|consen 145 GL-FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVV 223 (495)
T ss_pred HH-HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheE
Confidence 11 11111222222222 3446789999999999999999999988877543 2689999999887777666554
Q ss_pred HhhcCCc
Q 022198 291 NLFSTGE 297 (301)
Q Consensus 291 ~~~~~~~ 297 (301)
.++-.+.
T Consensus 224 f~~lp~~ 230 (495)
T KOG2533|consen 224 FFFLPDN 230 (495)
T ss_pred EEEecCC
Confidence 4443333
No 240
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.11 E-value=0.046 Score=51.27 Aligned_cols=164 Identities=13% Similarity=0.107 Sum_probs=88.0
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------hcCCc----hhHHhhhhhHHHHHHHHhhhccC
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------RFGWP----SVFYSFGSLGTVWFTVWLSKAHS 72 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------~~gWR----~~F~~~g~l~~~~~~~~~~~~~~ 72 (301)
+.+++|.++.+|-.|-.++++.+.++|.++++.+..++.+ .-.|. ..+.+.++.+++......+..++
T Consensus 151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~ 230 (472)
T TIGR00769 151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRN 230 (472)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999988888763 12352 34444444443322222221111
Q ss_pred CCCCCCCCCHHHHHHHHhccCCCCCCC--CCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchh-
Q 022198 73 SPAEDPQLRPAEKKLIVSSCASKEPVK--TIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTES- 148 (301)
Q Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~- 148 (301)
...+|+..++++ ++ +++++.. ...++.++|+|+++...+...+.+.....+ ..|- ..+.+.+ -|+.+-
T Consensus 231 -~~~~~~~~~~~~----~~-~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k-~~v~~~~-p~~~~~~ 302 (472)
T TIGR00769 231 -VLTDPRSYNPAL----KE-KKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWK-SKLKAQY-PSPNEYS 302 (472)
T ss_pred -ccCCccccchhh----cc-ccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CCHHHHH
Confidence 111122111111 00 1111111 124677899999887665554443332222 3444 3344443 344332
Q ss_pred ---hhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 149 ---GLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 149 ---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
+.+....++...+..++++++.+|+|-+
T Consensus 303 ~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~ 333 (472)
T TIGR00769 303 AFMGDFSTWTGVVSVTMMLLSGNVIRKYGWL 333 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2233333444445566668888887744
No 241
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.10 E-value=0.019 Score=49.00 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=52.3
Q ss_pred chhHHHHHHHHhhhhhhHHHHhhhHHHH---hh--hcCCchhHHhhhhhHHHHHHHHhhhccC-CCCCCCCCCHHHHHHH
Q 022198 15 AERSRSLALVYSGMYLGSVTGLAFSPFL---IH--RFGWPSVFYSFGSLGTVWFTVWLSKAHS-SPAEDPQLRPAEKKLI 88 (301)
Q Consensus 15 ~~rg~a~~~~~~g~~lG~~~g~~l~~~l---~~--~~gWR~~F~~~g~l~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~ 88 (301)
|+|+....+-.-+.++|.++....--.- .+ .-.|++++-+.+++..+-.+++...-.| ++..+ + +++|+.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~-~-~k~~k~-- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSP-K-EKQEKE-- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCc-c-cccccc--
Confidence 6677777777778888887765331111 11 1249999998888775554444443111 11111 1 111110
Q ss_pred HhccCCCCCCCCCChHHhhcChhHHHHHHHHH
Q 022198 89 VSSCASKEPVKTIPWGLILSKPPVWALIVSHF 120 (301)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 120 (301)
+....++....+.+|++..|.-.+.+.
T Consensus 78 -----~~~~~~~~s~~~~LK~K~tw~w~~~Yg 104 (267)
T PF07672_consen 78 -----NSTLSKKPSYKSILKEKETWKWILIYG 104 (267)
T ss_pred -----cccccccchHHHHHccchHHHHHHHHH
Confidence 000111235678999999998655543
No 242
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.87 E-value=0.12 Score=46.39 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 139 QVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 139 ~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
+++|++..+++.+.........+...+.|.++||+|||
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk 99 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK 99 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 47899999999988888888889999999999999977
No 243
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.61 E-value=0.044 Score=50.38 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=69.0
Q ss_pred HHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-cCChHHHH
Q 022198 134 PTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-VDSPAMAV 212 (301)
Q Consensus 134 p~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 212 (301)
-.|.++.|| |.+.+.+...+..+..+...+.+-|+.||+|-|.... ...+... ++..+-+..... .++...--
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l--lgt~ln~---iGa~Ir~iss~p~v~~~f~~~ 141 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALL--LGTVLNG---IGAWIRLISSLPFVPPLFRRP 141 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHH--HHHHHHH---HHHHHhhhccCccccccchhh
Confidence 356777778 6677778888888899999999999999998652110 0111111 111111111111 11111111
Q ss_pred HHHHHHHhhhhhhhcchhh-----hhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 213 LCMACSQGTDAFSQSGLYS-----NHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
++ ..+....+.+++-+.. ...-.+|++|++|..+..+...+|.+++-.+...++.+
T Consensus 142 l~-~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 142 LT-HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hh-HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 11 1122222222221111 11235678898888887777778888776666666554
No 244
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.58 E-value=0.046 Score=48.94 Aligned_cols=145 Identities=16% Similarity=0.153 Sum_probs=76.1
Q ss_pred cCcchhHHHHHHHH-hhhhhhHHHHhhhHHHHhhhcCC--chhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCHHHHHHH
Q 022198 12 VPVAERSRSLALVY-SGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLI 88 (301)
Q Consensus 12 ~p~~~rg~a~~~~~-~g~~lG~~~g~~l~~~l~~~~gW--R~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 88 (301)
+|++..+.-.+... .+..+-.+.+..++.++++..|- ..+|....++.++..++.....+|...+..+.++..++.
T Consensus 155 ~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~- 233 (354)
T PF05631_consen 155 FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSF- 233 (354)
T ss_pred CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHH-
Confidence 34444444433333 23333345566677777777765 788887444433332233223344332211100000000
Q ss_pred HhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHH
Q 022198 89 VSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGG 167 (301)
Q Consensus 89 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G 167 (301)
+..++.+++||+.+.+-+...+....+|.+ ..|.|+.-.++ - .-.-|++..-..++..+|+-+..
T Consensus 234 -----------~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~--~-~~P~GlIFssFM~a~MlGS~lf~ 299 (354)
T PF05631_consen 234 -----------REAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDD--E-ELPLGLIFSSFMVAMMLGSSLFS 299 (354)
T ss_pred -----------HHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCC--C-CCCchHHHHHHHHHHHHHHHHHH
Confidence 112456788899988777666666666665 68999866222 1 22356666555566666766665
Q ss_pred HHHH
Q 022198 168 WIAD 171 (301)
Q Consensus 168 ~l~D 171 (301)
++..
T Consensus 300 ~l~s 303 (354)
T PF05631_consen 300 RLLS 303 (354)
T ss_pred HHHh
Confidence 5444
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.51 E-value=0.53 Score=43.76 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQS 189 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~ 189 (301)
+..+.++..+++.+++-=..-+-.|.|+.+.+.-|.--.+.+.....+...+..+..|...||..|.+ ..+......-
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~--~~~~~l~~Qn 79 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLK--VIRTSLVVQN 79 (432)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchh--hHHHHHHHHH
Confidence 34567888899888887777777889999887767666666666666777777888888889875432 1111111222
Q ss_pred HhhHHHHH-HHHHhhccCC----hHHHHHHHHH--HHh-hhh-hhhcchhhhhh-------ccCCCchHHHHHHHhHHHh
Q 022198 190 IGFLGPAF-FLTQLSHVDS----PAMAVLCMAC--SQG-TDA-FSQSGLYSNHQ-------DIAPRYSGVLLGLSNTAGV 253 (301)
Q Consensus 190 ~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~--~~~-~~~-~~~~~~~~~~~-------~~~p~~~g~a~g~~~~~~~ 253 (301)
.....++. +...+..... ......+... ..+ ..- .+.....+... +-.++.....++.+.-+=.
T Consensus 80 ~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL 159 (432)
T PF06963_consen 80 LSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDL 159 (432)
T ss_pred HHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHH
Confidence 22222222 2222222111 1111111111 111 111 11111111111 1123334444444444445
Q ss_pred hHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHH
Q 022198 254 LAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 254 lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~ 287 (301)
+.-.++|.++|.+.+..|......+.++..++..
T Consensus 160 ~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~ 193 (432)
T PF06963_consen 160 FCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV 193 (432)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 6788999999999998777766666666666554
No 246
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.012 Score=54.17 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198 143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
++....+.......++-.+|.++.||+.||+|||+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 45566777778888999999999999999999873
No 247
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.44 E-value=0.033 Score=52.08 Aligned_cols=64 Identities=19% Similarity=0.077 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHH-HhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQ-VLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~-~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~ 174 (301)
..|...+..+.....+..+..=+=+|+++ +++-+.+..|+..+...++..+++++.|+-+.|.+
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~ 99 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG 99 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC
Confidence 34444444444333222222223357764 35777888999999999999999999999999876
No 248
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.38 E-value=0.097 Score=47.70 Aligned_cols=136 Identities=14% Similarity=0.054 Sum_probs=76.2
Q ss_pred HHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH-----HcCCcHHHHHHHHHHHhhHHHHHHHHHhhc-----c
Q 022198 136 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV-----SKGLSVTTVRKIMQSIGFLGPAFFLTQLSH-----V 205 (301)
Q Consensus 136 ~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 205 (301)
.+..|+++...-.+.+..+..+.+ ...+..|+.||+.. ||..-++. .......+............. .
T Consensus 5 VMIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~-G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 5 VMIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWG-GTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred hHHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHH-HHHHHHHHHHHHHHHHHHHcccccccc
Confidence 345677888777777776665444 46899999999986 44332221 111222222222222222222 0
Q ss_pred CChHHH-----HHHHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchH
Q 022198 206 DSPAMA-----VLCMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDD 274 (301)
Q Consensus 206 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~ 274 (301)
.+.... +.+...+.+.. .+++...+...|.. |++|+.+.++....--+|-.++..+.|.++|.++-..
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~-~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r 156 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVH-ASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER 156 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHh-HhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 112111 11222222222 22344455556665 4688999999888877888999999999999865443
No 249
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=96.36 E-value=0.085 Score=47.61 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCCh
Q 022198 129 LLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSP 208 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (301)
+...+-.-+++.-|.+..+..++..-...++.+++...|.++||+|||.. .. ..+.+....-.....+.+.
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~--------f~-~T~l~t~v~~~is~~spnf 166 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKG--------FN-LTFLVTGVFGVISGASPNF 166 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchh--------hh-hhHHHHHHHHHhhcCCCCe
Confidence 34445556777778888888888888889999999999999999998732 11 1111111111111222222
Q ss_pred HHHHHHH-HHHHhhhhhhhcchhhhhhccCCC-chHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHH
Q 022198 209 AMAVLCM-ACSQGTDAFSQSGLYSNHQDIAPR-YSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVG 286 (301)
Q Consensus 209 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~-~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~ 286 (301)
..+..+- ..+++++.. +...+...|.-|. +++.-+ ++.....+|..+...+.=.+..+.||++-.........+.
T Consensus 167 ~~L~~f~~l~~~g~gg~--pv~~~~yle~lp~~~r~~~~-V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~ 243 (528)
T KOG0253|consen 167 ASLCVFRALWGFGVGGL--PVDSAIYLEFLPSSHRWLLT-VMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA 243 (528)
T ss_pred ehhhHHHHHHhccCCCc--cHhHHHHHHhccCcCCCcch-hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 2222222 223444432 2222222344443 333322 2224455555555555444455678987766665444443
Q ss_pred HHHHHhhcCCccc
Q 022198 287 TAVWNLFSTGEKV 299 (301)
Q Consensus 287 ~~~~~~~~~~~~~ 299 (301)
+.+..+..+.+.
T Consensus 244 -a~f~~w~~ESpR 255 (528)
T KOG0253|consen 244 -ARFLVWVYESPR 255 (528)
T ss_pred -HHHHhhcccCcc
Confidence 444555544443
No 250
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.02 E-value=0.06 Score=37.80 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHH
Q 022198 123 NWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTL 173 (301)
Q Consensus 123 ~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~ 173 (301)
..+.+.+..-+|. ++++.++|.++.+++.....++..+|.+...++.++.
T Consensus 5 GigRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~ 54 (85)
T PF06779_consen 5 GIGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS 54 (85)
T ss_pred hhHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466777777766 5567899999999999999999999999999888864
No 251
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.02 E-value=1.4 Score=41.66 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=86.2
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh---------hcCCchhHH----hhhhhHHHHHHHHhhhcc
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH---------RFGWPSVFY----SFGSLGTVWFTVWLSKAH 71 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~---------~~gWR~~F~----~~g~l~~~~~~~~~~~~~ 71 (301)
+.+.+|.++.+|-.|.-++++.+.++|.+++..+...+.+ .-.|...+. +....+++..... +...
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~-~~~~ 244 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLY-RYMN 244 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4577899999999999999999999999999988888877 234764442 2222232221111 1111
Q ss_pred CCCCCCCCCCHHHHHHHHhccCCCCC-CCCCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcch-h
Q 022198 72 SSPAEDPQLRPAEKKLIVSSCASKEP-VKTIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTE-S 148 (301)
Q Consensus 72 ~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~-~ 148 (301)
+...++++..++++ +++.++++ .-...++.++|+|++....+...+......-+ ..|- ..+++.+ -|+.+ +
T Consensus 245 ~~vl~~~~~~~~~~----~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK-~~lk~~~-~~~~~ys 318 (491)
T PF03219_consen 245 KNVLTDPRFYPSAK----KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWK-SQLKQLY-PDPNDYS 318 (491)
T ss_pred HHccCccccchhhh----cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CCchHHH
Confidence 11111111111100 00001111 11124566889999887666554443333222 2444 3344433 34433 2
Q ss_pred ---hhHhhhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 149 ---GLFCVLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 149 ---~~~~~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
|.+....++...+-.++++.+.+|+|.+
T Consensus 319 afmG~~~~~tGivtii~~~l~~~iir~~GW~ 349 (491)
T PF03219_consen 319 AFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR 349 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2233344444555556667777776644
No 252
>PRK03612 spermidine synthase; Provisional
Probab=96.01 E-value=0.98 Score=43.17 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=31.2
Q ss_pred HhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH
Q 022198 131 TWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT 172 (301)
Q Consensus 131 ~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr 172 (301)
.|. .++...+|-+..+.+.+...+..+..+|+.+++++.++
T Consensus 36 ~~~-r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 36 LLG-TLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHH-HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444 45666778888888888888888888888888877643
No 253
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=95.97 E-value=0.091 Score=49.50 Aligned_cols=174 Identities=13% Similarity=0.050 Sum_probs=89.3
Q ss_pred HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198 105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR 184 (301)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~ 184 (301)
+++.++.....++.......+.-.+.+++==++ +++|-.+.--|.....-..+=.+.-++.+++..|+|+-+..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~----- 439 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVM----- 439 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccccee-----
Confidence 456666655444433333334434455553334 45665555555443333344556667788889888854311
Q ss_pred HHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhh-hccCCCchHHHHHHHhHHH-hhHHhHHHh
Q 022198 185 KIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNH-QDIAPRYSGVLLGLSNTAG-VLAGVFGTA 261 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~p~~~g~a~g~~~~~~-~lgg~~~~~ 261 (301)
..++.+-..=+.......+|+..+-.-. -+.....+- ....++. +..+|+.++++.++....- .+|-.+|..
T Consensus 440 ----~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW-aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gsl 514 (618)
T KOG3762|consen 440 ----YLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW-AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSL 514 (618)
T ss_pred ----eehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH-HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhh
Confidence 1122111111122233445543321111 111111111 1112232 3346778888888765443 256779999
Q ss_pred HhhhhcccCcchHHHHHHHHHHHHHHHH
Q 022198 262 ATGYILQHGSWDDVFKVSVGLYLVGTAV 289 (301)
Q Consensus 262 l~g~l~~~~~~~~~f~~~~~~~~v~~~~ 289 (301)
++|.+.++.+-+..|...++..++.++.
T Consensus 515 IGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 515 IGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 9999999988888887765555544433
No 254
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.92 E-value=0.00026 Score=65.89 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=67.0
Q ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccC---ChHHHHHH-HHHHHhhhh
Q 022198 148 SGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVD---SPAMAVLC-MACSQGTDA 223 (301)
Q Consensus 148 ~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~ 223 (301)
.++......++..+|.+++|+++||+|||..... . .....+......... +....... ...+++.+.
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~-------~--~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALII-------S--ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccc-------c--cccccccccccccccccccccccccccccccccccc
Confidence 4667777889999999999999999998843211 1 111111111111112 22222111 112222221
Q ss_pred hhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhccc---CcchHHHHHHHHHHHHHH
Q 022198 224 FSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYILQH---GSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 224 ~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~---~~~~~~f~~~~~~~~v~~ 287 (301)
. ......+..|.. ++.|+....+.+....+|..++..+.-.+.+. .+|+..+.+..+..++..
T Consensus 119 ~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~ 185 (451)
T PF00083_consen 119 A-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL 185 (451)
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 111223345654 46888888877776666655555443222221 348877766655554433
No 255
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.78 E-value=0.51 Score=43.33 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=35.5
Q ss_pred hhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCC--chhHHhhhhhHHHHH
Q 022198 9 SKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGW--PSVFYSFGSLGTVWF 63 (301)
Q Consensus 9 ~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gW--R~~F~~~g~l~~~~~ 63 (301)
++.+|+ ..++-+.+|...|.++|...-..+.. .|+ |..+.....++++..
T Consensus 137 t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~ 188 (402)
T PF02487_consen 137 THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFL 188 (402)
T ss_pred HHhcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHH
Confidence 345554 46788888888888888877666666 777 667877777775543
No 256
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.59 E-value=1.1 Score=37.95 Aligned_cols=142 Identities=20% Similarity=0.238 Sum_probs=70.9
Q ss_pred HHHhHHHHHHHHhCCCc--chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hHHHHHHHHHhhcc
Q 022198 129 LLTWMPTYYNQVLHFNL--TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG-FLGPAFFLTQLSHV 205 (301)
Q Consensus 129 ~~~wlp~~l~~~~g~s~--~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 205 (301)
.....|.+.. +.+.+. ...++......+...++.++.|+++||+|||+ ....... .....+ ...+...
T Consensus 21 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~-~~~~~~~ 91 (338)
T COG0477 21 LSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-------VLIIGLLLFLLGTL-LLALAPN 91 (338)
T ss_pred HHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-------HHHHHHHHHHHHHH-HHHhCcc
Confidence 3345555554 445554 46778778888888888899999999997651 1111111 111111 1111111
Q ss_pred CChHHHHHHHH-HHHhhhhhhhcchhhhhhccCCC--chHHHHHHHhH-HHhhHHhHHHhHhhhhccc--CcchHHHHHH
Q 022198 206 DSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAPR--YSGVLLGLSNT-AGVLAGVFGTAATGYILQH--GSWDDVFKVS 279 (301)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~--~~g~a~g~~~~-~~~lgg~~~~~l~g~l~~~--~~~~~~f~~~ 279 (301)
......+.... .+.+.+. ..+...+...+..|+ .++...+.... ...++..++|.+.+.+.+. .+|...|...
T Consensus 92 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (338)
T COG0477 92 VGLALLLILRLLQGLGGGG-LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLA 170 (338)
T ss_pred chHHHHHHHHHHHHhhhHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11212211111 1121111 111222333444553 66777776666 4666777777666666554 4577655444
Q ss_pred H
Q 022198 280 V 280 (301)
Q Consensus 280 ~ 280 (301)
.
T Consensus 171 ~ 171 (338)
T COG0477 171 A 171 (338)
T ss_pred H
Confidence 3
No 257
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=95.10 E-value=0.3 Score=44.74 Aligned_cols=159 Identities=19% Similarity=0.109 Sum_probs=76.6
Q ss_pred HHhHHHHHHHHhCC---Ccchh----hhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHH-HHHH
Q 022198 130 LTWMPTYYNQVLHF---NLTES----GLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAF-FLTQ 201 (301)
Q Consensus 130 ~~wlp~~l~~~~g~---s~~~~----~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (301)
.+..|.|+++..+- ++.+. ++...+..+...+-.++-|.++|+.|+|+ +.......+.... +...
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk-------~~~~~f~~i~i~~~~~L~ 107 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRK-------KFFGFFTAIGIISTFLLW 107 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc-------hHHHHHHHHHHHHHHHHH
Confidence 35677888766555 55443 33334445556666778889999998773 2221111111111 1111
Q ss_pred hhcc-CChHHHHHHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHh--hhhc----------
Q 022198 202 LSHV-DSPAMAVLCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAAT--GYIL---------- 267 (301)
Q Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~--g~l~---------- 267 (301)
+... ......+.+++.......++.....+...+..+ +..+..++.....+++|+.+.-..+ +...
T Consensus 108 ~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l 187 (438)
T COG2270 108 FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIIL 187 (438)
T ss_pred HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEe
Confidence 1222 223333333332111111111111233334433 3445555666667777666543332 1111
Q ss_pred ------ccCcchHHHHHHHHHHHHHHHHHHhhcC
Q 022198 268 ------QHGSWDDVFKVSVGLYLVGTAVWNLFST 295 (301)
Q Consensus 268 ------~~~~~~~~f~~~~~~~~v~~~~~~~~~~ 295 (301)
|...-+.++.+.++.+++..+.+.+..+
T Consensus 188 ~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~ 221 (438)
T COG2270 188 LGLPPADGEDVRITGLLAALWWLLFALPMILNVH 221 (438)
T ss_pred eccCccccccchhHHHHHHHHHHHHHhHHHhccc
Confidence 1122456777788888887777666543
No 258
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=95.06 E-value=3.1 Score=39.09 Aligned_cols=164 Identities=10% Similarity=0.052 Sum_probs=83.7
Q ss_pred hhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhh-c---------CCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 6 NILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHR-F---------GWPSVFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 6 ~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~-~---------gWR~~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
....|.+..+|-.|-.++++.+.+++..++..+..++.+. . .=+..|.+.+..+++......+..+.-++
T Consensus 171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~ 250 (509)
T COG3202 171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLT 250 (509)
T ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567888899999999999999999999988887777651 1 13344555555554432222222222222
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCC-CCChHHhhcChhHHHHHHHHHhhHHHHHHH-HHhHHHHHHHHhCCCcchhhhH--
Q 022198 76 EDPQLRPAEKKLIVSSCASKEPVK-TIPWGLILSKPPVWALIVSHFCHNWGTFIL-LTWMPTYYNQVLHFNLTESGLF-- 151 (301)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~wlp~~l~~~~g~s~~~~~~~-- 151 (301)
++... .++.+ +++.++...+ ...++-++|+|+++...+...+.+....-+ .+|-.- .++.+-.+.....++
T Consensus 251 ~~~f~-~~~~~---kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~-ik~~~~~~~~~~~f~~~ 325 (509)
T COG3202 251 DPLFY-LRAKK---KKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSG-IKELYPTTNEYTAFMGR 325 (509)
T ss_pred Ccchh-HHHhc---ccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHhcCChhHHHHHHHH
Confidence 22111 11110 0000111100 113555788999888766655544433332 355433 222333332333333
Q ss_pred -hhhhHHH-HHHHHHHHHHHHHHHH
Q 022198 152 -CVLPWLT-MAFSANLGGWIADTLV 174 (301)
Q Consensus 152 -~~~~~i~-~~~g~~~~G~l~Dr~~ 174 (301)
....++. .++....++-+..|.|
T Consensus 326 ~~~~tgvv~~v~~~~~~s~~ir~~G 350 (509)
T COG3202 326 FQIWTGVVSLVVFLFPGSNLIRRVG 350 (509)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhh
Confidence 3333333 3445566666666665
No 259
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=94.95 E-value=4.2 Score=40.09 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=46.9
Q ss_pred CchhhhHhhccCcc---hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhc-------CCchhHHhhhhhHHHH
Q 022198 2 PAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRF-------GWPSVFYSFGSLGTVW 62 (301)
Q Consensus 2 p~~~~~i~~~~p~~---~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~-------gWR~~F~~~g~l~~~~ 62 (301)
|+..+...|-++++ +|-+...++..+.++|+.++.++.+++.+.. ||...|.+.+++-++.
T Consensus 104 p~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 104 PCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred cCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence 56667778888654 4678888889999999999999998887443 6999999866654443
No 260
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=94.73 E-value=0.025 Score=53.14 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=44.9
Q ss_pred HHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCC
Q 022198 125 GTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGL 178 (301)
Q Consensus 125 ~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~ 178 (301)
..-.+...+++|.. ++|+++.+.|.++..-.+..+++.++.|+++||+.+|+.
T Consensus 26 ~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~ 78 (618)
T KOG3762|consen 26 RFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRP 78 (618)
T ss_pred cccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 34446678888887 569999999999988899999999999999999976643
No 261
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=93.18 E-value=3.7 Score=37.51 Aligned_cols=165 Identities=15% Similarity=0.012 Sum_probs=82.4
Q ss_pred hHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHH
Q 022198 103 WGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTT 182 (301)
Q Consensus 103 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~ 182 (301)
++++++-|....+.......-.++.+--.-.+.-+. ++|++..+-+++..+..-...+.....|+.+. +.|.+....
T Consensus 258 l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLl-e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~l 334 (510)
T KOG3574|consen 258 LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLL-EHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFL 334 (510)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHH-HcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHH
Confidence 456777787776666555555565555566666666 56999988887764433344444444443332 123333222
Q ss_pred HHHHH-HHHhhHHHHHHHHHhhccCC-----hHHHHHHHHHHHhh-hhhhhcch---hhhhhc-cCCCchHHHHHHHhHH
Q 022198 183 VRKIM-QSIGFLGPAFFLTQLSHVDS-----PAMAVLCMACSQGT-DAFSQSGL---YSNHQD-IAPRYSGVLLGLSNTA 251 (301)
Q Consensus 183 ~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~p~~~g~a~g~~~~~ 251 (301)
.+... ...+....+ .......... +...-++..+...+ +.+..+.. ++.... ..|+..|+-+.+.|+.
T Consensus 335 ka~~~R~~~~~~~t~-Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTL 413 (510)
T KOG3574|consen 335 KAVPYRLGGGLVQTA-LVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTL 413 (510)
T ss_pred HhhhHHHHHHHHHHH-HHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHH
Confidence 11111 111111111 1111111111 11111111111111 11111111 112222 3467889999999999
Q ss_pred HhhHHhHHHhHhhhhcccCc
Q 022198 252 GVLAGVFGTAATGYILQHGS 271 (301)
Q Consensus 252 ~~lgg~~~~~l~g~l~~~~~ 271 (301)
.++||.--..+.+++.|..+
T Consensus 414 snLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 414 SNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHhcCCcHHHHHHHhcccCc
Confidence 99999999999999988633
No 262
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=92.67 E-value=1.2 Score=40.37 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 238 PRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 238 p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
++.+.....+.....++|+.+++.+.+++-++.||...|.+.++..+++.+.+..
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 3456778888999999999999999999999999999999999888888777644
No 263
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=92.67 E-value=9.2 Score=36.12 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=31.5
Q ss_pred hhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc
Q 022198 229 LYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL 267 (301)
Q Consensus 229 ~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~ 267 (301)
.|+...|.. +++..+-.++...++++|..+++.+..++.
T Consensus 150 FW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 150 FWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554 467888999999999999999999998876
No 264
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=90.83 E-value=10 Score=36.71 Aligned_cols=172 Identities=15% Similarity=0.098 Sum_probs=93.6
Q ss_pred HhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHH
Q 022198 120 FCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFL 199 (301)
Q Consensus 120 ~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~ 199 (301)
.+...++|++..=+-+|+.+++|.+...+........-......+++++++|-+-.|-..+... -.+..++..+..+..
T Consensus 47 ~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~-s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 47 VLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIG-SLISLLGLFGLTLSA 125 (571)
T ss_pred HHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455667777666668999999999877777666555456677789999999885541111100 001111111111111
Q ss_pred HHhhc-------------cC--ChHHH-HHHHHHH-Hhhhhhhh-cchhhhhhcc----CCC---chHHHHHHHhHHHhh
Q 022198 200 TQLSH-------------VD--SPAMA-VLCMACS-QGTDAFSQ-SGLYSNHQDI----APR---YSGVLLGLSNTAGVL 254 (301)
Q Consensus 200 ~~~~~-------------~~--~~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~----~p~---~~g~a~g~~~~~~~l 254 (301)
..... .. +.... +...... .+.+.... +.+.+...|. .|+ ....-..+.....+.
T Consensus 126 ~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~ 205 (571)
T KOG1237|consen 126 MIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNG 205 (571)
T ss_pred HhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHH
Confidence 10000 00 11111 1111110 11111110 1111221222 122 234677777888888
Q ss_pred HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 255 AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 255 gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
|..++..+.-+.-|+.+|..+|.+..++.+++.+++..
T Consensus 206 g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 206 GALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred HHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 99999999999988889999999988888887766543
No 265
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=87.56 E-value=1.2 Score=37.59 Aligned_cols=60 Identities=30% Similarity=0.567 Sum_probs=46.7
Q ss_pred CchhhhHhhccCc-chhHHHHHHHHh-hhhhhHHHHhhhHHHHhhh--cCCchhHHhhhhhHHH
Q 022198 2 PAMNNILSKWVPV-AERSRSLALVYS-GMYLGSVTGLAFSPFLIHR--FGWPSVFYSFGSLGTV 61 (301)
Q Consensus 2 p~~~~~i~~~~p~-~~rg~a~~~~~~-g~~lG~~~g~~l~~~l~~~--~gWR~~F~~~g~l~~~ 61 (301)
|....+++|++|+ ++|+...+.... ...+|..+++.+++.+... .+||..|.........
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 113 PVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5667889999998 789999999998 5778888888777666554 7899988775555533
No 266
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=87.37 E-value=0.84 Score=41.44 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=47.4
Q ss_pred CchhhhHhhccCcc---hhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhH
Q 022198 2 PAMNNILSKWVPVA---ERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG 59 (301)
Q Consensus 2 p~~~~~i~~~~p~~---~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~ 59 (301)
|+..++.+|-++++ +|.+.-.+++.+.++|..++..+.+++-+.+||...|.+.++.-
T Consensus 52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~ 112 (372)
T PF00854_consen 52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM 112 (372)
T ss_dssp HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH
Confidence 45667788888655 56778888999999999999999999999999999999855543
No 267
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=87.31 E-value=5.3 Score=37.26 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred chhhhHhhccCcchhHH-HHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHH
Q 022198 3 AMNNILSKWVPVAERSR-SLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFY 53 (301)
Q Consensus 3 ~~~~~i~~~~p~~~rg~-a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~ 53 (301)
++-++++|.+.+++|-+ +.++...-..+|..+|..+++ ..|||-.|-
T Consensus 162 p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~~ 209 (498)
T KOG0637|consen 162 PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIFP 209 (498)
T ss_pred hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEee
Confidence 35578899997777776 999999999999999888776 557776653
No 268
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=86.93 E-value=5.3 Score=38.26 Aligned_cols=33 Identities=12% Similarity=0.304 Sum_probs=24.2
Q ss_pred CCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022198 143 FNLTESGLFCVLPWLTMAFSANLGGWIADTLVS 175 (301)
Q Consensus 143 ~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~ 175 (301)
+++...|.+.....+..++++.++|+.+-|.-+
T Consensus 290 ~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 290 LSPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred ccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455656666666667788888888888888754
No 269
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=86.75 E-value=5 Score=35.43 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=40.4
Q ss_pred CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc----------------CcchHHHHHHHHHHHHHHHHHHhh
Q 022198 237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH----------------GSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~----------------~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+++.++...++.+.+..+|..++|.+.+.+... ..|+..+...+.+.++..+.+...
T Consensus 40 ~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~ 112 (310)
T TIGR01272 40 PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFL 112 (310)
T ss_pred CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678888999999999999999999988743 246677775555544444444443
No 270
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.03 E-value=38 Score=31.88 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.0
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhh
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAF 38 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l 38 (301)
..+++|+.++|++.|..++.=+-...+..+|..+
T Consensus 124 G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 124 GGYLTSNSTRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 3578999999999999998877777777776543
No 271
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=82.41 E-value=2.6 Score=36.12 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=34.1
Q ss_pred hhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhH
Q 022198 4 MNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLG 59 (301)
Q Consensus 4 ~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~ 59 (301)
+.....+.||+ +||+++|+.-+...+++.+=..+...+-+.-.-+..+++ +..+
T Consensus 117 ~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~l-a~~~ 170 (250)
T PF06813_consen 117 SLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFL-AVLP 170 (250)
T ss_pred HHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHH-HHHH
Confidence 34556688985 899999999998888766655554444443234444443 4433
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=81.78 E-value=49 Score=31.53 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCCchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 237 APRYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 237 ~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
.|...|+-+.+.|+..|+||.-...++-+++|.
T Consensus 435 DP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 435 DPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred CcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 578899999999999999999998888888774
No 273
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=81.17 E-value=2.4 Score=37.22 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=43.9
Q ss_pred hhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC---CchhHHh
Q 022198 5 NNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG---WPSVFYS 54 (301)
Q Consensus 5 ~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g---WR~~F~~ 54 (301)
+..++...|+++-|++-|++++..++|..+-+.+.+.+.+.-| |-.+|++
T Consensus 374 WP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl 426 (459)
T KOG4686|consen 374 WPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFL 426 (459)
T ss_pred hhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHH
Confidence 4567788999999999999999999999999999999988644 8888876
No 274
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=79.27 E-value=29 Score=27.36 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHHhHHHHHHHHhCCC----cchhhhHh-hhhHHHHHHHHHHHHHHHHHHHHc
Q 022198 125 GTFILLTWMPTYYNQVLHFN----LTESGLFC-VLPWLTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 125 ~~~~~~~wlp~~l~~~~g~s----~~~~~~~~-~~~~i~~~~g~~~~G~l~Dr~~~r 176 (301)
++.+..+-.-+.+++.+.-+ ....|+.. .+......++.++...+.+|+|.|
T Consensus 11 af~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K 67 (156)
T PF05978_consen 11 AFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPK 67 (156)
T ss_pred HHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Confidence 33334344444554443322 12345543 444566778888889999998854
No 275
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=78.99 E-value=1.2 Score=41.34 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH----HHHcCC
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT----LVSKGL 178 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr----~~~r~~ 178 (301)
.....+...+++-.=.+++|+|+++ .|.+.+..+.+-....+.+.+..++.|..+|| +||||.
T Consensus 37 v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP 103 (498)
T KOG0637|consen 37 VASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP 103 (498)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccc
Confidence 3333444445555557999999985 59999888888777778888999999999996 455543
No 276
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=75.29 E-value=0.85 Score=43.79 Aligned_cols=50 Identities=8% Similarity=-0.073 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022198 126 TFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVS 175 (301)
Q Consensus 126 ~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~ 175 (301)
.+++..=.-+-++++++++.+++|.+....-++..+..++..++.+|..|
T Consensus 18 ~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hr 67 (539)
T PF03137_consen 18 VSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHR 67 (539)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 33433333356889999999999999999999999999999999888543
No 277
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=73.12 E-value=51 Score=30.47 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHH-----HHHHcC
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIAD-----TLVSKG 177 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~D-----r~~~r~ 177 (301)
.++.+...+..+. .-+++..-+|.+++ ..|.|-++.+.+..... =.--.++...+.| |+|||+
T Consensus 32 ~illLl~LYllQG-iP~GL~~~iP~lL~-ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Grrk 99 (510)
T KOG3574|consen 32 SILLLLFLYLLQG-IPLGLIGAIPLLLQ-AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRK 99 (510)
T ss_pred hHHHHHHHHHHcC-CchhHhhhhHHHhc-CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccc
Confidence 4445555555554 34566667887776 66999888777654331 1123567778888 888763
No 278
>COG1288 Predicted membrane protein [Function unknown]
Probab=69.92 E-value=33 Score=31.88 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=19.0
Q ss_pred cCCchhHHhhhhhHHHHHH-HHhhhccCCCCC
Q 022198 46 FGWPSVFYSFGSLGTVWFT-VWLSKAHSSPAE 76 (301)
Q Consensus 46 ~gWR~~F~~~g~l~~~~~~-~~~~~~~~~p~~ 76 (301)
.+||.+.++...+.-++.. .+.++.+++|+.
T Consensus 216 ~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~~ 247 (481)
T COG1288 216 MGLRIVVWVVFTLISIIYVYWYASKVKKDPTL 247 (481)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5899999986665444333 333455555653
No 279
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=69.26 E-value=97 Score=28.75 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=32.9
Q ss_pred HhHHHHHHHH-hCCCcchhhhHhhhhH-HHHHHHHHHHHHHHHHHHHc
Q 022198 131 TWMPTYYNQV-LHFNLTESGLFCVLPW-LTMAFSANLGGWIADTLVSK 176 (301)
Q Consensus 131 ~wlp~~l~~~-~g~s~~~~~~~~~~~~-i~~~~g~~~~G~l~Dr~~~r 176 (301)
.++..|+.+. +|++..|...-..+.. -...+..+....++|..+.|
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk 71 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK 71 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677888876 8999888776544443 34556667778899988654
No 280
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.54 E-value=46 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022198 156 WLTMAFSANLGGWIADTLVS 175 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~~~ 175 (301)
.+++.+.....||+.||+..
T Consensus 52 fIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45556666678999999853
No 281
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=56.53 E-value=1.7e+02 Score=27.15 Aligned_cols=59 Identities=14% Similarity=0.018 Sum_probs=28.1
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLV 174 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~ 174 (301)
..++........+..+.+=-+-|.++..+.+. +-.+.....+.+-+..++.-.+--|..
T Consensus 22 i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~ 80 (406)
T KOG1479|consen 22 IFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLN 80 (406)
T ss_pred HHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444566666656555555445554 333344444444444444444444443
No 282
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.41 E-value=1.7e+02 Score=29.47 Aligned_cols=50 Identities=8% Similarity=-0.038 Sum_probs=39.6
Q ss_pred HHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198 128 ILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 128 ~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
++..-.-+-++++++++.+++|.+....-++..+...+..+...|..|.+
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr 163 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR 163 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccc
Confidence 44444556688999999999999998888888888888888888865443
No 283
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=53.08 E-value=62 Score=29.89 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHhCCCcch---hhhHhhh-hHHHHHHHHHHHHHHHH
Q 022198 130 LTWMPTYYNQVLHFNLTE---SGLFCVL-PWLTMAFSANLGGWIAD 171 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~---~~~~~~~-~~i~~~~g~~~~G~l~D 171 (301)
.+-.|.+..+.++-...+ +...... .++.-.+|.+...+.-+
T Consensus 263 LsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~ 308 (406)
T KOG1479|consen 263 LSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW 308 (406)
T ss_pred eEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC
Confidence 345677777665443321 2222333 45566666666555544
No 284
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=49.77 E-value=1.7e+02 Score=25.20 Aligned_cols=18 Identities=6% Similarity=-0.335 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHh
Q 022198 124 WGTFILLTWMPTYYNQVL 141 (301)
Q Consensus 124 ~~~~~~~~wlp~~l~~~~ 141 (301)
...|+....-..|++++.
T Consensus 192 GvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 192 GVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred HHHHhcccchHHHHHhCc
Confidence 346666666667777653
No 285
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=46.25 E-value=8.6 Score=33.59 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198 136 YYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 136 ~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
|+.+.||+...+++.+.....-...+...+.|-++||.|||+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKr 103 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKR 103 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccc
Confidence 455788999999888655443344556667788999999875
No 286
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=44.27 E-value=85 Score=25.50 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcC
Q 022198 153 VLPWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 153 ~~~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
.+..+...+++++|+++..|.-+|+
T Consensus 159 ~~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 159 IIIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334566677788888888776653
No 287
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=41.60 E-value=24 Score=25.80 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=19.2
Q ss_pred hhhcCCchhHHhhhhhHHHHHHHHhhhccC
Q 022198 43 IHRFGWPSVFYSFGSLGTVWFTVWLSKAHS 72 (301)
Q Consensus 43 ~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~ 72 (301)
-+..+|+.+|++.-.+++++..+++.+.||
T Consensus 54 ~d~e~we~~~f~~~~~~~v~~~~~~~y~PD 83 (105)
T PF10183_consen 54 RDWEGWELPFFFGFSGSLVFGGVFLAYKPD 83 (105)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356799999998555555554555555444
No 288
>PRK11588 hypothetical protein; Provisional
Probab=40.38 E-value=2.6e+02 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=16.7
Q ss_pred cCCchhHHhhhhh-HHHHHHHHhhhccCCCCCC
Q 022198 46 FGWPSVFYSFGSL-GTVWFTVWLSKAHSSPAED 77 (301)
Q Consensus 46 ~gWR~~F~~~g~l-~~~~~~~~~~~~~~~p~~~ 77 (301)
.+||.+.++.... ++.....+.++.+++|++.
T Consensus 229 ~~~R~i~~~v~~~i~i~yv~~YA~kVkkdP~kS 261 (506)
T PRK11588 229 SGLRIVMWVIFTLIGLIFTMVYASRVKKNPLLS 261 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4799888764332 2333233344555556543
No 289
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.10 E-value=91 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=23.1
Q ss_pred CchHHHHHHHhHHHhhHHhHHHhHhhhhccc
Q 022198 239 RYSGVLLGLSNTAGVLAGVFGTAATGYILQH 269 (301)
Q Consensus 239 ~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~ 269 (301)
+..+.+.++-...=.++|.+-...+||++|+
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~llD~ 68 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDK 68 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665666667888888889999998
No 290
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=39.70 E-value=2.1e+02 Score=23.32 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcC
Q 022198 155 PWLTMAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~r~ 177 (301)
..+...+++++|+++..|.-+|+
T Consensus 164 ~~~~t~v~~~iG~~iG~kllkKH 186 (189)
T TIGR02185 164 MIVLTAVAGIAGVLIGKKLLKKH 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777777776653
No 291
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=38.02 E-value=51 Score=18.11 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=11.9
Q ss_pred hHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 51 VFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 51 ~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
.|+..+.++++.+.+. .+|+|+
T Consensus 7 tfll~~tlgiiFFAIf---FRepPr 28 (31)
T PRK11875 7 ILILTLALVTLFFAIA---FRDPPK 28 (31)
T ss_pred HHHHHHHHHHHHHhhh---ccCCCC
Confidence 4566666666654343 345554
No 292
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=37.57 E-value=1.6e+02 Score=21.54 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH
Q 022198 111 PVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADT 172 (301)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr 172 (301)
...++......+.+|+-....|+.+++.+.+. .-+..++... -...-++-|.++||
T Consensus 50 Fi~Rt~~FIlicAFGYGll~v~~tP~l~~~L~--~~~~~~l~~~----vl~~F~~iG~lAqR 105 (106)
T PF11872_consen 50 FILRTLAFILICAFGYGLLIVWLTPLLARQLA--QLPNYWLAPV----VLLSFILIGVLAQR 105 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHH----HHHHHHHHHHHhcc
Confidence 34444444445566776778999888876532 2222332221 11223455777776
No 293
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=35.02 E-value=2.1e+02 Score=24.08 Aligned_cols=19 Identities=26% Similarity=0.245 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 022198 159 MAFSANLGGWIADTLVSKG 177 (301)
Q Consensus 159 ~~~g~~~~G~l~Dr~~~r~ 177 (301)
..+...+.|++..|+.+++
T Consensus 180 ~~~~L~~~G~~~~~~~~~~ 198 (225)
T cd02434 180 VAFTLFLLGSFKSKLYNGK 198 (225)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 4556666777777776554
No 294
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=33.86 E-value=71 Score=27.90 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=35.3
Q ss_pred HHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHH---------HHHHHHc
Q 022198 130 LTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWI---------ADTLVSK 176 (301)
Q Consensus 130 ~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l---------~Dr~~~r 176 (301)
.+|+-.|+++. |.++++....+....+.-.+.+++.|.. .||+|||
T Consensus 37 FTYlllfltqi-glsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~ 91 (412)
T KOG4830|consen 37 FTYLLLFLTQI-GLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRR 91 (412)
T ss_pred HHHHHHHHHHh-cCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcce
Confidence 45565678765 9999999888888888888888888643 4788765
No 295
>PF15192 TMEM213: TMEM213 family
Probab=33.69 E-value=36 Score=22.86 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 40 PFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 40 ~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
||+....||..-|+..-.++ +--.+...||+||
T Consensus 46 GWIAAAVGWSLwFLTLILLC---vdKlmKLtPdepK 78 (82)
T PF15192_consen 46 GWIAAAVGWSLWFLTLILLC---VDKLMKLTPDEPK 78 (82)
T ss_pred hHHHHHHhHHHHHHHHHHHH---HHHHhccCCCCcc
Confidence 67777778877776422222 1234445566654
No 296
>CHL00031 psbT photosystem II protein T
Probab=32.79 E-value=59 Score=18.19 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=11.8
Q ss_pred hHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 51 VFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 51 ~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
.|+..+.++++.+.+. .+|+|+
T Consensus 7 tfll~~tlgilFFAI~---FRePPr 28 (33)
T CHL00031 7 TFLLVSTLGIIFFAIF---FREPPK 28 (33)
T ss_pred HHHHHHHHHHHHHhhe---ecCCCC
Confidence 4565566666644333 345554
No 297
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=29.67 E-value=1.1e+02 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=16.3
Q ss_pred cCCchhHHhhhhhHHHHHHHH
Q 022198 46 FGWPSVFYSFGSLGTVWFTVW 66 (301)
Q Consensus 46 ~gWR~~F~~~g~l~~~~~~~~ 66 (301)
-|||..-++.|.++++.+.++
T Consensus 3 rg~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 3 RGWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred ccccchhhHHHHHHHHHHHHh
Confidence 489999998888887765443
No 298
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=29.31 E-value=4.8e+02 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHhCC
Q 022198 124 WGTFILLTWMPTYYNQVLHF 143 (301)
Q Consensus 124 ~~~~~~~~wlp~~l~~~~g~ 143 (301)
+++..+.+ .|.|+++.+-.
T Consensus 10 ~pWN~fit-A~~Yf~~~y~~ 28 (437)
T TIGR00939 10 LPWNAFIT-APQYFIEYYKY 28 (437)
T ss_pred chhHHHhh-HHHHHHHHhcc
Confidence 34455555 66677655443
No 299
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=29.01 E-value=3e+02 Score=21.93 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 022198 157 LTMAFSANLGGWIADTLVSKGL 178 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~ 178 (301)
+...+.-.+.|++..|+.++++
T Consensus 124 ~~~~~~L~ilG~~~a~~s~~~~ 145 (169)
T TIGR00267 124 LLTLIALLVLGVYLGRISRENI 145 (169)
T ss_pred HHHHHHHHHHHHHHHHHcCCcH
Confidence 4455666677888888875543
No 300
>PRK10263 DNA translocase FtsK; Provisional
Probab=28.32 E-value=8.1e+02 Score=26.73 Aligned_cols=14 Identities=21% Similarity=-0.130 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 022198 156 WLTMAFSANLGGWI 169 (301)
Q Consensus 156 ~i~~~~g~~~~G~l 169 (301)
+.++.+|..+...+
T Consensus 62 Nl~GiVGA~LAD~L 75 (1355)
T PRK10263 62 NLGGMPGAWLADTL 75 (1355)
T ss_pred cccchHHHHHHHHH
Confidence 34444444443333
No 301
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=27.55 E-value=99 Score=22.01 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022198 155 PWLTMAFSANLGGWIADTLVS 175 (301)
Q Consensus 155 ~~i~~~~g~~~~G~l~Dr~~~ 175 (301)
......+.+.+.|.+.||..|
T Consensus 84 ~~~~~l~va~v~g~l~~~~r~ 104 (105)
T PF13493_consen 84 TFAVFLVVALVTGYLADRYRR 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 345677788899999999854
No 302
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=25.46 E-value=4e+02 Score=22.26 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 022198 157 LTMAFSANLGGWIADTLVSKGL 178 (301)
Q Consensus 157 i~~~~g~~~~G~l~Dr~~~r~~ 178 (301)
+...+.-.+.|++..|+.++++
T Consensus 172 ~~~~~aL~~~G~~~a~~~~~~~ 193 (218)
T cd02432 172 IATLLALALTGYVSARLGGASV 193 (218)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH
Confidence 4466666777777777766544
No 303
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.17 E-value=1.2e+02 Score=17.13 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022198 154 LPWLTMAFSANLGGWIADT 172 (301)
Q Consensus 154 ~~~i~~~~g~~~~G~l~Dr 172 (301)
.+.+++.+.+++.+|+-+|
T Consensus 16 AP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 16 APIIAGIIASLIVGWLRNR 34 (35)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 4456677777777776554
No 304
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=22.71 E-value=22 Score=30.89 Aligned_cols=61 Identities=8% Similarity=0.179 Sum_probs=38.5
Q ss_pred CCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHH
Q 022198 100 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMA 160 (301)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~ 160 (301)
+.+|...|++-.++...+.+.+.-.-...-..|+|-|..++..++.+...+.-.+..++..
T Consensus 191 Rm~W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF 251 (412)
T KOG4830|consen 191 RMHWTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSF 251 (412)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhh
Confidence 3467777777777776666665544444445788888888878877666554444444433
No 305
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=21.35 E-value=2.9e+02 Score=24.96 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhHHHHhhhHHHHhh--hcCCchhHHhhhhhHHHHHHHHh
Q 022198 20 SLALVYSGMYLGSVTGLAFSPFLIH--RFGWPSVFYSFGSLGTVWFTVWL 67 (301)
Q Consensus 20 a~~~~~~g~~lG~~~g~~l~~~l~~--~~gWR~~F~~~g~l~~~~~~~~~ 67 (301)
.++-|++|...+.++|..--..+.+ .++=|...++.-.++++.+..++
T Consensus 147 ~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf 196 (409)
T KOG3880|consen 147 VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYF 196 (409)
T ss_pred eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHH
Confidence 4455566655555555543333433 24556677776667765544333
No 306
>COG0701 Predicted permeases [General function prediction only]
Probab=21.22 E-value=4.2e+02 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=15.6
Q ss_pred HHHHhHHHHHHHH-hCCCcchhhhHhhh
Q 022198 128 ILLTWMPTYYNQV-LHFNLTESGLFCVL 154 (301)
Q Consensus 128 ~~~~wlp~~l~~~-~g~s~~~~~~~~~~ 154 (301)
.+..|+|....++ .|-+.-.+..++..
T Consensus 211 ~i~~~vp~~~l~~~~G~~~~~s~~~a~~ 238 (317)
T COG0701 211 AIQVYLPQDILLSYLGSNGIFSVLLAVL 238 (317)
T ss_pred HHHhccCHHHHHHHhcCCchHHHHHHHH
Confidence 3567888876655 56664444444433
No 307
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.55 E-value=86 Score=18.53 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhcCCcccc
Q 022198 279 SVGLYLVGTAVWNLFSTGEKVV 300 (301)
Q Consensus 279 ~~~~~~v~~~~~~~~~~~~~~~ 300 (301)
.+++.+++.+++..|..|+|.+
T Consensus 19 lv~i~iva~~iYRKw~aRkr~l 40 (43)
T PF08114_consen 19 LVGIGIVALFIYRKWQARKRAL 40 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888988888887764
No 308
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=20.41 E-value=1e+02 Score=16.71 Aligned_cols=15 Identities=33% Similarity=0.890 Sum_probs=7.6
Q ss_pred hHHhhhhhHHHHHHH
Q 022198 51 VFYSFGSLGTVWFTV 65 (301)
Q Consensus 51 ~F~~~g~l~~~~~~~ 65 (301)
.|...+.++++.+.+
T Consensus 7 ~~ll~~tlgilffAI 21 (29)
T PF01405_consen 7 TFLLIGTLGILFFAI 21 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 455555566554333
No 309
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=20.00 E-value=7.2e+02 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=15.8
Q ss_pred hhccCcchhHHHHHHHHhhhhhhHHHHhhh
Q 022198 9 SKWVPVAERSRSLALVYSGMYLGSVTGLAF 38 (301)
Q Consensus 9 ~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l 38 (301)
+..+|++ .+..+++|..++.+++..+
T Consensus 131 a~~fp~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 131 AGVFPST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred cccCCHH----HHHHHHhcchhHHHHHHHH
Confidence 4456653 5666667777776665543
Done!