Query 022198
Match_columns 301
No_of_seqs 124 out of 1444
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:32:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.6E-26 5.5E-31 212.4 21.8 283 2-293 138-433 (451)
2 3o7q_A L-fucose-proton symport 99.9 2E-24 6.7E-29 197.8 21.6 263 2-288 136-427 (438)
3 2gfp_A EMRD, multidrug resista 99.9 7.3E-24 2.5E-28 190.5 5.5 256 2-280 107-363 (375)
4 2cfq_A Lactose permease; trans 99.9 1.6E-21 5.3E-26 178.5 16.1 276 5-299 122-405 (417)
5 4aps_A DI-OR tripeptide H+ sym 99.8 4E-20 1.4E-24 171.9 17.2 286 2-293 127-471 (491)
6 4gc0_A D-xylose-proton symport 99.8 1.2E-18 4.2E-23 161.7 19.2 291 2-300 145-471 (491)
7 2xut_A Proton/peptide symporte 99.6 2.5E-15 8.5E-20 140.7 13.8 62 2-63 128-192 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 1.3E-12 4.6E-17 121.0 19.3 173 110-292 13-195 (491)
9 2xut_A Proton/peptide symporte 99.4 5.1E-12 1.7E-16 118.2 15.9 172 110-291 12-196 (524)
10 3o7q_A L-fucose-proton symport 99.3 3.4E-10 1.2E-14 102.9 19.8 167 115-292 31-228 (438)
11 1pw4_A Glycerol-3-phosphate tr 99.3 5.4E-11 1.8E-15 108.6 14.2 170 112-293 30-206 (451)
12 2cfq_A Lactose permease; trans 99.2 2.2E-12 7.5E-17 117.6 0.4 173 105-285 2-179 (417)
13 2gfp_A EMRD, multidrug resista 99.2 9.2E-11 3.1E-15 104.8 10.3 162 116-288 6-169 (375)
14 4gc0_A D-xylose-proton symport 98.2 4.7E-05 1.6E-09 69.9 15.7 113 146-268 55-187 (491)
15 3arc_T Photosystem II reaction 33.0 46 0.0016 17.7 2.7 22 51-75 7-28 (32)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.6e-26 Score=212.35 Aligned_cols=283 Identities=16% Similarity=0.228 Sum_probs=193.8
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcC-CchhHHhhhhhHHHHHHHHhhhccCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQL 80 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~g-WR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~ 80 (301)
|+..++++|++|+|+|+++.++.+.+.++|..+|+.+++.+.+.+| ||++|++.+++.++..++.....+|+|++....
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence 5678899999999999999999999999999999999999999999 999999988877665444444566666532111
Q ss_pred CHHHH-----HHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhh
Q 022198 81 RPAEK-----KLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLP 155 (301)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~ 155 (301)
++++. ....++.+++...++..+++++|+|.++...+..++...+.++...|+|.|+++.+|+|..+++.+....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 218 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 11100 0000000001111111246788999999988888888888889999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHHHhhHHHHHHHHHhhcc--CChHHHHHH-HHHHHhhhhhhhcchh
Q 022198 156 WLTMAFSANLGGWIADTL--VSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHV--DSPAMAVLC-MACSQGTDAFSQSGLY 230 (301)
Q Consensus 156 ~i~~~~g~~~~G~l~Dr~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (301)
.++..++.++.|+++||+ ++| +.+.....+..++........ .+......+ ...+.+... ..+...
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~ 368 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG-PVMLIG 368 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc-hHHHHH
Confidence 999999999999999998 644 222111111111222222222 233222222 222222221 112223
Q ss_pred hhhhccCC-CchHHHHHHHhHHHhh-HHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 231 SNHQDIAP-RYSGVLLGLSNTAGVL-AGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 231 ~~~~~~~p-~~~g~a~g~~~~~~~l-gg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
....+..| +.++++.|+.+...++ ++.++|.+.|++.|+.|+...|.+.+++.+++.+.....
T Consensus 369 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 369 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 6799999999999999 999999999999999889999988877777766554443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2e-24 Score=197.84 Aligned_cols=263 Identities=9% Similarity=0.060 Sum_probs=180.5
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHh-hhcC-------------------------CchhHHhh
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HRFG-------------------------WPSVFYSF 55 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~-~~~g-------------------------WR~~F~~~ 55 (301)
|+..++++|++|+|+|++++++.+.+.++|..+++.+++.+. +..+ ||+.|++.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 567889999999999999999999999999999999999998 5554 99999887
Q ss_pred hhhHHHHHHHHhh-hccCCCCCCCCCCHHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHH
Q 022198 56 GSLGTVWFTVWLS-KAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMP 134 (301)
Q Consensus 56 g~l~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp 134 (301)
+.+..+...++.. ..||+++++ +++ ++++..+.++++++|+|.++...+..++.....+....|+|
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSDN---HSD----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLI 282 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTC---CCC----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccccc---ccc----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766554333332 222222111 000 01111123567899999999988888877777888899999
Q ss_pred HH-HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHH
Q 022198 135 TY-YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVL 213 (301)
Q Consensus 135 ~~-l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (301)
.| +++.+|+|..+++.+.....++..++.+++|+++||+++|+ .+. ...+..++.........+....+.
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 353 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--------VLA-AYALIAMALCLISAFAGGHVGLIA 353 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------HHH-HHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99 88888999999999999999999999999999999998652 111 111112222221222223322222
Q ss_pred HHHHHHhhhhhhhcchhhhhhccCCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCc-chHHHHHHHHHHHHHHH
Q 022198 214 CMACSQGTDAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGS-WDDVFKVSVGLYLVGTA 288 (301)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~-~~~~f~~~~~~~~v~~~ 288 (301)
+...+++.+. ..+..++...+..|++++.+.++.+ .+.+++.++|.+.|++.|+.| ++..|.+.+++.++..+
T Consensus 354 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 354 LTLCSAFMSI-QYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2222222221 1233344444555655888888766 678999999999999999966 88888876655555443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.88 E-value=7.3e-24 Score=190.54 Aligned_cols=256 Identities=9% Similarity=0.023 Sum_probs=177.6
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLR 81 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~ 81 (301)
|...+++.|++|+|+|+++.+..+.+.++|..+++.+++++.+.+|||+.|++.+++.++..+......||+|+++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP-- 184 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--
Confidence 566789999999999999999999999999999999999999999999999987777655433233334443322110
Q ss_pred HHHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHH
Q 022198 82 PAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAF 161 (301)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~ 161 (301)
+++ .+.++++++|+|.++...+..++...+.+...+|.|.|+++.+|+|+.+.+.+.....++..+
T Consensus 185 ------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 185 ------------RTR--LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp ------------CCC--TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ------------ccc--HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 001 123456799999999888888887888888999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHH-HHHHHHHHhhhhhhhcchhhhhhccCCCc
Q 022198 162 SANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMA-VLCMACSQGTDAFSQSGLYSNHQDIAPRY 240 (301)
Q Consensus 162 g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 240 (301)
+.++.++++||.+++ ... .....................+.... +.....+++.+. ..+.......|..|++
T Consensus 251 ~~~~~~~l~~r~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~ 323 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTL--MWQ----SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFPFL 323 (375)
T ss_dssp HHHHHHTTTTHHHHH--HHH----HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCCcc
Confidence 999999999998752 000 00000000000001001011112211 111222222222 1233334445555688
Q ss_pred hHHHHHHHhHHHhhHHhHHHhHhhhhcccCcchHHHHHHH
Q 022198 241 SGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV 280 (301)
Q Consensus 241 ~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~ 280 (301)
++++.|+.+..+++|+.++|.+.|.+.++.++...+.+.+
T Consensus 324 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 324 AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999999988877777766543
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=1.6e-21 Score=178.46 Aligned_cols=276 Identities=11% Similarity=0.038 Sum_probs=167.8
Q ss_pred hhhHhhccCc--chhHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCCCCCCCCCCH
Q 022198 5 NNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRP 82 (301)
Q Consensus 5 ~~~i~~~~p~--~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~ 82 (301)
...+.++.++ |+|++..|....+.++|..+++.+++++.+ ++||+.|++.+++.++..+.+. ..+|+|++.++ +
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~--~ 197 (417)
T 2cfq_A 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLF-FAKTDAPSSAT--V 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSC-SSCCCCSCSSC--S
T ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHH-HcCcccccccc--c
Confidence 3445566554 466777888888889999999999999887 6999999987666544332322 22332211110 0
Q ss_pred HHHHHHHhccCCCCCCCCCChHHhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCC---CcchhhhHhhhhHHHH
Q 022198 83 AEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHF---NLTESGLFCVLPWLTM 159 (301)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~---s~~~~~~~~~~~~i~~ 159 (301)
+|+ ++ .++++....++++++|+|+++...+..++....++...+|+|.|+++.++. +..+.++...+..++.
T Consensus 198 ~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 272 (417)
T 2cfq_A 198 ANA----VG-ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272 (417)
T ss_dssp SSS----SS-SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHH
T ss_pred ccc----cc-cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 000 00 001110112356789999988776665554455666778999999766542 2344566666777788
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhhccCChHHHHHHHH-HHHhhhhhhhcchhhhhhccCC
Q 022198 160 AFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLSHVDSPAMAVLCMA-CSQGTDAFSQSGLYSNHQDIAP 238 (301)
Q Consensus 160 ~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p 238 (301)
.++.++.|+++||++||+ .+. .+....++.........+....+.... .+.+...+ ....+....|..|
T Consensus 273 ~~~~~~~g~l~dr~g~~~--------~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p 342 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKN--------ALL-LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL-LVGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHHHHHHHHCHHH--------HHH-HHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHH-HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcHHH--------HHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCC
Confidence 899999999999998762 111 222222222222223333332222111 11111111 1222334455555
Q ss_pred -CchHHHHHHH-hHHHhhHHhHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHHhhcCCccc
Q 022198 239 -RYSGVLLGLS-NTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 299 (301)
Q Consensus 239 -~~~g~a~g~~-~~~~~lgg~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 299 (301)
+.+|++.+.. +..+++|+.++|.+.|++.|+.|+...|.+.+++.+++.+......+++++
T Consensus 343 ~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 6789999984 888889999999999999998788888988888888777665454444443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=4e-20 Score=171.92 Aligned_cols=286 Identities=12% Similarity=0.053 Sum_probs=165.3
Q ss_pred CchhhhHhhccCcch--hHHHHHHHHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHHHHHhhhccCC-CC--C
Q 022198 2 PAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS-PA--E 76 (301)
Q Consensus 2 p~~~~~i~~~~p~~~--rg~a~~~~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~~~~~~~~~~~-p~--~ 76 (301)
|+..++++|++|+++ |+++.+.++.+.++|..+|+.+++.+.+.+|||++|++.++..++..+.+....++. ++ +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 567889999999988 788888899999999999999999999999999999987665544322222111111 11 1
Q ss_pred CCC--CCHHHHHHHHhc------------------cCCCC-----------------------CCCCCChHHhhcChhHH
Q 022198 77 DPQ--LRPAEKKLIVSS------------------CASKE-----------------------PVKTIPWGLILSKPPVW 113 (301)
Q Consensus 77 ~~~--~~~~~~~~~~~~------------------~~~~~-----------------------~~~~~~~~~ll~~~~~~ 113 (301)
+++ .++++.+...+. ...+. ..++.+..+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 111 122222110000 00000 00000001111222233
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhH
Q 022198 114 ALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFL 193 (301)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~ 193 (301)
...+..++....+....+++|.|+++..+.+..+.+.+.....++..++.++.|+++||++||+.... ++. ..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~--~~~--~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP--TKF--AVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH--HHH--HHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch--HHH--HHHHH
Confidence 33434444334455567889999998889998888998888899999999999999999987743221 111 11111
Q ss_pred HHHHHH--HHhhc-------cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhH
Q 022198 194 GPAFFL--TQLSH-------VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAA 262 (301)
Q Consensus 194 ~~~~~~--~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l 262 (301)
..++.. ..... ..+....+ .....+.+.+. ..+..+....|..| +.++++.|+.+...++|+.++|.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~ 441 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11100 11222222 22222222221 12223344455555 678999999999999999999999
Q ss_pred hhhhcccCcchHHHHHHHHHHHHHHHHHHhh
Q 022198 263 TGYILQHGSWDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 263 ~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
.+++.|. +....|.+.+++.+++.+....+
T Consensus 442 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 442 VTLYNAK-SEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp GGGGGGS-STTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998876 46667776666666655544443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.81 E-value=1.2e-18 Score=161.73 Aligned_cols=291 Identities=14% Similarity=0.071 Sum_probs=170.3
Q ss_pred CchhhhHhhccCcchhHHHHHHHHhhhhhhHHHHhhhHHHHhh--------hcCCchhHHhhhhhHHHHHHHHhhhccCC
Q 022198 2 PAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH--------RFGWPSVFYSFGSLGTVWFTVWLSKAHSS 73 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~~~~g~~lG~~~g~~l~~~l~~--------~~gWR~~F~~~g~l~~~~~~~~~~~~~~~ 73 (301)
|.+..+++|+.|+++|++..++.+.+..+|.+++..++..+.. .++||..+.+..+..++. .+.....||+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peS 223 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCC
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCC
Confidence 5677899999999999999999999999999999888877654 346888888755554443 4455567888
Q ss_pred CCCC--CCCCHHHHHHHHh---c-----------cCCCCCCCCCChHHhhcChhHHHHHH-HHHhhHHHHHHHHHhHHHH
Q 022198 74 PAED--PQLRPAEKKLIVS---S-----------CASKEPVKTIPWGLILSKPPVWALIV-SHFCHNWGTFILLTWMPTY 136 (301)
Q Consensus 74 p~~~--~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~wlp~~ 136 (301)
|+.. ++.+++.++..++ + ...++.++.......++.++...... ..+.+..+.+.+..|.|.+
T Consensus 224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 8631 1111111110000 0 00000000111223444454444333 3334444566666777666
Q ss_pred HHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHH-HhhccCChHHHHHHH
Q 022198 137 YNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLT-QLSHVDSPAMAVLCM 215 (301)
Q Consensus 137 l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 215 (301)
.+ ..+.+..+......+..+...++.++++++.||+|||+.... .........+.+. ...........+..+
T Consensus 304 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 304 FK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII------GALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH------HHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc------chHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 55 568888777777778888999999999999999987632111 1111111111111 111222222222222
Q ss_pred HHH-HhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhccc------CcchHHHHHHHHHHHHHH
Q 022198 216 ACS-QGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQH------GSWDDVFKVSVGLYLVGT 287 (301)
Q Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~------~~~~~~f~~~~~~~~v~~ 287 (301)
... .++.....+..+....|..| +.|+++.|+.+..+++++.+++.+.+.+.+. .++...|.+.+++.+++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 111 11111111223445567777 6799999999999999999999888777654 234456677667777665
Q ss_pred HHHHh--hcCCcccc
Q 022198 288 AVWNL--FSTGEKVV 300 (301)
Q Consensus 288 ~~~~~--~~~~~~~~ 300 (301)
+.... .+|++|++
T Consensus 457 i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 457 LFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHCCCCTTCCH
T ss_pred HHHHheecCCCCCCH
Confidence 54433 38888875
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.63 E-value=2.5e-15 Score=140.71 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=54.1
Q ss_pred CchhhhHhhccCcchhHHHHHH---HHhhhhhhHHHHhhhHHHHhhhcCCchhHHhhhhhHHHHH
Q 022198 2 PAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWF 63 (301)
Q Consensus 2 p~~~~~i~~~~p~~~rg~a~~~---~~~g~~lG~~~g~~l~~~l~~~~gWR~~F~~~g~l~~~~~ 63 (301)
|+..++++|++|+++|+++.+. .+.+.++|..+|+.+++.+.+.+|||++|++.+++.++..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 5678899999999999887777 9999999999999999999999999999998777665543
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.50 E-value=1.3e-12 Score=121.02 Aligned_cols=173 Identities=10% Similarity=0.080 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH-----hCCCcchhhhHhhhhHHHHHHHHHHHHHHHHH-HHHcCCcHHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQV-----LHFNLTESGLFCVLPWLTMAFSANLGGWIADT-LVSKGLSVTTV 183 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~-----~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr-~~~r~~~~~~~ 183 (301)
+..+...+..++..+++|+...++|.|++++ +|+|..+.+++.....++..++.+++|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 3566677777778889999999999999998 99999999999999999999999999999999 78762
Q ss_pred HHHHHHHhhHHHHHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCc--hHHHHHHHhHHHhhHHhHH
Q 022198 184 RKIMQSIGFLGPAFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRY--SGVLLGLSNTAGVLAGVFG 259 (301)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~--~g~a~g~~~~~~~lgg~~~ 259 (301)
.+ ..+.+..++........++....+. ....+.+.+.. .+...+...|.. +++ |+.+.++.+...++|..++
T Consensus 87 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 162 (491)
T 4aps_A 87 --AV-FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA 162 (491)
T ss_dssp --HH-HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence 11 1222222222222223333333222 22222322222 122233334443 445 7888888899999999999
Q ss_pred HhHhhhhcccCcchHHHHHHHHHHHHHHHHHHh
Q 022198 260 TAATGYILQHGSWDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 260 ~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~~ 292 (301)
|.+.|++.++.+|+..|.+.++..+++.+.+..
T Consensus 163 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 163 PLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999889999999887777766655443
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.40 E-value=5.1e-12 Score=118.15 Aligned_cols=172 Identities=14% Similarity=0.064 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhC------CCcchhhhHhhhhHHHHHHHHHHHHHHHHHH-HHcCCcHHH
Q 022198 110 PPVWALIVSHFCHNWGTFILLTWMPTYYNQVLH------FNLTESGLFCVLPWLTMAFSANLGGWIADTL-VSKGLSVTT 182 (301)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g------~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~-~~r~~~~~~ 182 (301)
|.+|...+..++...++|+...++|.|+++++| +|..+.+++.....++..++.+++|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 455666677777788899999999999999999 9999999999999999999999999999999 8652
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccC-ChHHHHH-HHHHHHhhhhhhhcchhhhhhccC-CCchHHHHHH---HhHHHhhHH
Q 022198 183 VRKIMQSIGFLGPAFFLTQLSHVD-SPAMAVL-CMACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGL---SNTAGVLAG 256 (301)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~---~~~~~~lgg 256 (301)
.+. .+.+..++......... +....+. ....+.+.+.. .+...+...|.. +++|+.+.+. .+...++|+
T Consensus 87 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 87 ---TIL-WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp ---HHH-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred ---HHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 111 12222222221122223 3332222 22222222211 122233344444 4566655444 888899999
Q ss_pred hHHHhHhhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 022198 257 VFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWN 291 (301)
Q Consensus 257 ~~~~~l~g~l~~~~~~~~~f~~~~~~~~v~~~~~~ 291 (301)
.++|.+.|++.++.+|+..|.+.+++.+++.+.+.
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988899999888777776655543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.27 E-value=3.4e-10 Score=102.92 Aligned_cols=167 Identities=11% Similarity=0.108 Sum_probs=106.2
Q ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHH
Q 022198 115 LIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLG 194 (301)
Q Consensus 115 ~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~ 194 (301)
..+..++...........+|. +++++|+|..+.+++.....++..++.++.|+++||+|||+. + ..+.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~--------l-~~~~~~ 100 (438)
T 3o7q_A 31 LCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG--------I-ITGLFL 100 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH--------H-HHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH--------H-HHHHHH
Confidence 344444444455556666766 567889999999999999999999999999999999997621 1 111211
Q ss_pred HHHHHHHh---hccCChHHHHHH-HHHHHhhhhhhhcchhhhhhccC-CCchHHHHHHHhHHHhhHHhHHHhHhhhhc-c
Q 022198 195 PAFFLTQL---SHVDSPAMAVLC-MACSQGTDAFSQSGLYSNHQDIA-PRYSGVLLGLSNTAGVLAGVFGTAATGYIL-Q 268 (301)
Q Consensus 195 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~-~ 268 (301)
.++..... ...++....+.. ...+.+.+.. .+...+...|.. +++|+.+.++.+....+|..++|.+.+.+. +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22111111 233344333222 2222222222 122233444554 578999999999999999999999999998 6
Q ss_pred cCc-------------------------chHHHHHHHHHHHHHHHHHHh
Q 022198 269 HGS-------------------------WDDVFKVSVGLYLVGTAVWNL 292 (301)
Q Consensus 269 ~~~-------------------------~~~~f~~~~~~~~v~~~~~~~ 292 (301)
..+ |+..|.+.++..++..+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 544 888887766655555444433
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.27 E-value=5.4e-11 Score=108.59 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=109.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 022198 112 VWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIG 191 (301)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~ 191 (301)
++...+..++.....+.....+|.+.+ ++ .|..+.+++.....++..++.++.|+++||+|||+ .+. .+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~--------~l~-~~ 98 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV--------FLP-AG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------HHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH--------HHH-HH
Confidence 344444455555555556677777665 56 99999999999999999999999999999999762 111 11
Q ss_pred hHHHHHHHHHhhc----cCChHHHH-HHHHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhh
Q 022198 192 FLGPAFFLTQLSH----VDSPAMAV-LCMACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGY 265 (301)
Q Consensus 192 ~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~ 265 (301)
.+..++....... ..+....+ .....+.+.+.. .+...+...|..| ++|+.+.++.+....+|..++|.+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 22332222 222222222211 1222344455554 789999999999999999999999999
Q ss_pred hcccCc-chHHHHHHHHHHHHHHHHHHhh
Q 022198 266 ILQHGS-WDDVFKVSVGLYLVGTAVWNLF 293 (301)
Q Consensus 266 l~~~~~-~~~~f~~~~~~~~v~~~~~~~~ 293 (301)
+.++.+ |+..|.+.+++.++..+....+
T Consensus 178 l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 178 GMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877 9999988877776655544333
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.19 E-value=2.2e-12 Score=117.60 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=104.7
Q ss_pred HhhcChhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Q 022198 105 LILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVR 184 (301)
Q Consensus 105 ~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~ 184 (301)
+.+|+|++|......++...++.....++|.|+++++|+|..+.+++.....++..++.++.|+++||+|||+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~-- 79 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI-- 79 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH--
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH--
Confidence 368999999887777666666666788999999988999999999999999999999999999999999987421110
Q ss_pred HHHHHHhhHHHHHHHHHhhc--cCChHHHHHHHHHHHhhhhhhhcchhhhhhcc---CCCchHHHHHHHhHHHhhHHhHH
Q 022198 185 KIMQSIGFLGPAFFLTQLSH--VDSPAMAVLCMACSQGTDAFSQSGLYSNHQDI---APRYSGVLLGLSNTAGVLAGVFG 259 (301)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~g~a~g~~~~~~~lgg~~~ 259 (301)
.................. ....... ....+...+.. .+.......+. .++.++.+.|..+..+.+|+.++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 80 --ITGMLVMFAPFFIFIFGPLLQYNILVG--SIVGGIYLGFC-FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG 154 (417)
T ss_dssp --HHHTTSCHHHHHHHTHHHHHHTTCCHH--HHGGGSSTTHH-HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 000000000010000000 0000000 00000001100 00001111111 12345666777788889999999
Q ss_pred HhHhhhhcccCcchHHHHHHHHHHHH
Q 022198 260 TAATGYILQHGSWDDVFKVSVGLYLV 285 (301)
Q Consensus 260 ~~l~g~l~~~~~~~~~f~~~~~~~~v 285 (301)
|.+.|++.+. +|+..|++.++..++
T Consensus 155 ~~l~~~l~~~-~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 155 ASIVGIMFTI-NNQFVFWLGSGCALI 179 (417)
T ss_dssp HHHHHHHHHH-CSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHh-chhHHHHHHHHHHHH
Confidence 9999999875 688888765544333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.17 E-value=9.2e-11 Score=104.77 Aligned_cols=162 Identities=12% Similarity=0.020 Sum_probs=104.3
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHhCCCcchhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHH
Q 022198 116 IVSHFCHNWGTFILLTWMPTYYNQVLHFNLTESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGP 195 (301)
Q Consensus 116 ~~~~~~~~~~~~~~~~wlp~~l~~~~g~s~~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~ 195 (301)
.+..++...........+|.+ .+++|.|..+.++......++..++.++.|+++||+|||+...... ......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~------~~~~~~ 78 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM------SIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH------HHHHHH
Confidence 344444445555566667765 4578999999999999999999999999999999999876543211 111111
Q ss_pred HHHHHHhhccCChHHHHH-HHHHHHhhhhhhhcchhhhhhcc-CCCchHHHHHHHhHHHhhHHhHHHhHhhhhcccCcch
Q 022198 196 AFFLTQLSHVDSPAMAVL-CMACSQGTDAFSQSGLYSNHQDI-APRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWD 273 (301)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~p~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~~~~~~ 273 (301)
.+.. . ..++....+. ....+.+.+.. .+...+...|. ++++|+.+.+..+....+|..++|.+.+++.++.+|+
T Consensus 79 ~~~~-~--~~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 79 TLVA-V--TTSSLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHH-H--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHH-H--HhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 1111 1 1112222221 11122222211 12222333344 3578899999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHH
Q 022198 274 DVFKVSVGLYLVGTA 288 (301)
Q Consensus 274 ~~f~~~~~~~~v~~~ 288 (301)
..|.+.++..++..+
T Consensus 155 ~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887777766655
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.17 E-value=4.7e-05 Score=69.92 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=61.6
Q ss_pred chhhhHhhhhHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhHHHHHHHHHhh------------------ccCC
Q 022198 146 TESGLFCVLPWLTMAFSANLGGWIADTLVSKGLSVTTVRKIMQSIGFLGPAFFLTQLS------------------HVDS 207 (301)
Q Consensus 146 ~~~~~~~~~~~i~~~~g~~~~G~l~Dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 207 (301)
.+.+++.+...++..+|.++.|+++||+|||+. +. +..+...+...... ...+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~--------l~-~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDS--------LK-IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH--------HH-HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--------HH-HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh
Confidence 345677777889999999999999999998731 11 11111111111000 1122
Q ss_pred hHHHHHH-HHHHHhhhhhhhcchhhhhhccCC-CchHHHHHHHhHHHhhHHhHHHhHhhhhcc
Q 022198 208 PAMAVLC-MACSQGTDAFSQSGLYSNHQDIAP-RYSGVLLGLSNTAGVLAGVFGTAATGYILQ 268 (301)
Q Consensus 208 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~a~g~~~~~~~lgg~~~~~l~g~l~~ 268 (301)
....+.. ...+++.+... +.......|..| +.|+...+..+....+|..+++.+...+.+
T Consensus 126 ~~~l~~~R~l~G~g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 2222221 22233332211 122234456654 689999998888777777777666655543
No 15
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=32.95 E-value=46 Score=17.75 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=11.2
Q ss_pred hHHhhhhhHHHHHHHHhhhccCCCC
Q 022198 51 VFYSFGSLGTVWFTVWLSKAHSSPA 75 (301)
Q Consensus 51 ~F~~~g~l~~~~~~~~~~~~~~~p~ 75 (301)
.|...+.++++.+.+. .+|+|+
T Consensus 7 t~ll~~tlgiiFFAI~---FRePPr 28 (32)
T 3arc_T 7 VFIFACIIALFFFAIF---FREPPR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHH---TSCCCC
T ss_pred HHHHHHHHHHHHHhhh---hcCCCC
Confidence 4555566665543333 346564
Done!