BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022200
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 55 THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
T LH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 112 NLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170
+ V + + G TPLH A N L + K L + T L++AA+N L+V+K
Sbjct: 60 D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 171 VML 173
++L
Sbjct: 119 LLL 121
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKS 145
G +PLHLA +N H ++V L++ + V + + G TPLH A N L + K L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS 199
+ T L++AA+N L+V+K++L D +N KD G LH++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL----EAGAD--VNAKDKNGRTPLHLA 108
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 55 THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV 109
T LH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 70 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 15 SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
S +RL EAA+ GN D + +L+ D D + P LH AA GH EI
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTP-----LHYAAENGHK----EI 52
Query: 73 MRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 127
++L K + ++ G +PLH A +N H ++V L+ D N GR TPLHY
Sbjct: 53 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHY 109
Query: 128 VAEN 131
AEN
Sbjct: 110 AAEN 113
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Query: 55 THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID--V 109
T LH AA GH EI++L K + ++ G +PLH A +N H ++V L+
Sbjct: 72 TPLHYAAENGHK----EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 110 DRNLVRVQGREGVTPL-----HYVAENVDLLYK 137
D N GR TPL H E V LL K
Sbjct: 128 DPNTSDSDGR---TPLDLAREHGNEEIVKLLEK 157
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 94 ALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACPKSILQVT 150
A +N + V L++ D N GR TPLHY AEN + K L +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR---TPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 151 IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
T L+ AA+N +++K++L +K N KD +G LH
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL------SKGADPNAKDSDGRTPLH 108
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 15 SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
S ++L EAA+AG D + L+ D D + P LH+AA GH+ +E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTP-----LHLAAKTGHLEI-VEV 65
Query: 73 MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--- 129
+ + + YG +PLHLA N H ++V L+ + V + EG TPLH A
Sbjct: 66 LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDG 124
Query: 130 --ENVDLLYKF 138
E V++L K+
Sbjct: 125 HLEIVEVLLKY 135
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV 114
T LHIAA V A +++ S A ++ G +PLHLA Q H +MV L+ N
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G 271
Query: 115 RVQGREGVTPLHYVAEN-----VDLLYKFLTACPKSILQVTIRKE-TALYVAAKNDKLKV 168
+ + G+TPLH VA+ D+L K ++ T R T L+VA+ +K+
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKL 326
Query: 169 LKVML 173
+K +L
Sbjct: 327 VKFLL 331
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 20/166 (12%)
Query: 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQI--DQVPFVDTHLHIAASMGHVNFALEIM 73
+ + L+ AA+AG+ + L+ A + + DQ P LH AA +GH N ++
Sbjct: 46 KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-----LHCAARIGHTNMVKLLL 100
Query: 74 R--LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE- 130
P+ A G +PLH+A + H + VL L++ + + + ++G TPLH A+
Sbjct: 101 ENNANPNLA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMT-KKGFTPLHVAAKY 156
Query: 131 ---NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
V L A P + + + T L+VA ++ L ++K++L
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGL---TPLHVAVHHNNLDIVKLLL 199
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 21 LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
L+ AQ G+V + +++ + ++D ++ + T LH+A+ G++ +++ +
Sbjct: 282 LHLVAQEGHVP-VADVLIKHGVMVDATTRMGY--TPLHVASHYGNIKLVKFLLQHQADVN 338
Query: 81 RKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLT 140
K + G SPLH A Q HT +V L+ + V +G TPL +A+ L Y +T
Sbjct: 339 AK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPL-AIAKR--LGYISVT 393
Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196
+L+V + ET+ + + ++ + + D+I++ +DEG L+
Sbjct: 394 ----DVLKV-VTDETSFVLVSDKHRMSFPETV---------DEILDVSEDEGEELI 435
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 50/201 (24%)
Query: 55 THLHIAASMGHVNFALEIMRLKPS--------------FARK----------QNQYGC-- 88
T LH+A+ MGH+ +++ S AR QN+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 89 ------SPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAE--NVDLLYKF 138
+PLH A + HT MV L++ + NL G TPLH A +V+ +
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH---TPLHIAAREGHVETVLAL 132
Query: 139 LTACPKSILQVTIRKE--TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196
L K Q + K+ T L+VAAK K++V +++L +D N G L
Sbjct: 133 LE---KEASQACMTKKGFTPLHVAAKYGKVRVAELLL------ERDAHPNAAGKNGLTPL 183
Query: 197 HISISRKLESTVRNFGGREGS 217
H+++ V+ R GS
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGS 204
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A + DQ T LH+AA +GH +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+ ++ G +PLHLA N H ++V L+ + V Q G+TPLH A+
Sbjct: 68 KHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLHLAAD 122
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
T LH+AA GH+ +E++ + Q+ YG +PLHLA H ++V L+
Sbjct: 82 TPLHLAADNGHLEI-VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTA 141
+ G +PLHLA H ++V L+ + V + +G TPLH A+N L + + L
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 142 CPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+ T L++AA L++++V+L VN D +
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGK 147
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EAA+AG D + L+ A ++ D+ + T LH+AA GH+ +E++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 71
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+++ G +PLHLA + H ++V L+ + V + ++G TPLH A
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 121
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EAA+AG D + L+ A ++ D+ + T LH+AA GH+ +E++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 59
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+++ G +PLHLA + H ++V L+ + V + ++G TPLH A
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 55 THLHIAASMGHVNFALEIMRL--KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
T LH A GH++ +++M+ PS + GCS +HLA Q HT +V LI ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 113 LVRVQGREGVTPLHYVA---ENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169
V + + G+TPL + A +VD LT L K TAL+ A V+
Sbjct: 135 -VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 170 KVML 173
++L
Sbjct: 194 SLLL 197
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + LI A ++ +D T LH+AA GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGAD-VNAVDNTGL--TPLHLAAVSGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA----- 129
+ + YG +PLHLA H ++V L+ + V G TPLH A
Sbjct: 68 KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHL 126
Query: 130 ENVDLLYKF 138
E V++L K+
Sbjct: 127 EIVEVLLKY 135
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EAA+AG D + L+ A ++ D+ + T LH+AA GH+ +E++ +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-VNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGA 59
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+++ G +PLHLA + H ++V L+ + V + ++G TPLH A
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAA 109
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKS 145
G +PLHLA +N H ++V L++ + V + + G TPLH A N L + K L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVML 173
+ T L++AA+N L+V+K++L
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 55 THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
T LH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 112 NLVRVQGREGVTPLHYVAEN 131
+ V + + G TPLH A N
Sbjct: 60 D-VNAKDKNGRTPLHLAARN 78
Score = 32.0 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 55 THLHIAASMGHVNFALEIMRL---KPSFARKQNQYGCSPLHLALQNSHTQMVLRLID 108
T LH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 37 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EAA+AG D + L+ A D + + DT LH+AA +GH+ +E++ +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEI-VEVLLKNGA 71
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-----ENVD 133
+ G +PLHLA + H ++V L+ + V G TPLH A E V+
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIVE 130
Query: 134 LLYKF 138
+L K+
Sbjct: 131 VLLKY 135
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVA-----ENVDLL 135
++ YG +PLHLA + H ++V L+ +N V + G TPLH A E V++L
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVL 99
Query: 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
K+ + T L++AA L++++V+L + VN D +
Sbjct: 100 LKY----GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGK 147
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 14/131 (10%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ D V + T LH+AA GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAADVVGW--TPLHLAAYWGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVA--- 129
+ + G +PLHLA H ++V L+ +N V ++ G+TPLH A
Sbjct: 68 KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANRG 124
Query: 130 --ENVDLLYKF 138
E V++L K+
Sbjct: 125 HLEIVEVLLKY 135
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACPKS 145
G +PLH A +N H ++V LI + V + +G TPLH+ AEN + K L +
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+ T L+ AA+N +V+K+++ VN D R
Sbjct: 96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 94 ALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACPKSILQVT 150
A +N + V LI+ D N GR TPLH+ AEN + K L + +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR---TPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 151 IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
T L+ AA+N +V+K++ ++K +N KD +G LH
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLL------ISKGADVNAKDSDGRTPLH 108
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ D V + T LH+AA GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNASDHVGW--TPLHLAAYFGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ + G +PLHLA H ++V L+ + V G TPLH A
Sbjct: 68 KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAA 121
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVD-THLHIAASMGHVNFALEIM 73
S ++L EAA+AG D + L+ A ++ F T LH+AA GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGA----DVNARDFTGWTPLHLAAHFGHLEI-VEVL 66
Query: 74 RLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+ ++ G +PLHLA + H ++V L+ + V G TPLH A+
Sbjct: 67 LKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAK 122
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMV 103
T LH+AA GH+ +E++ + + +G +PLHLA + H ++V
Sbjct: 82 TPLHLAARRGHLEI-VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIV 129
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 86 YGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-----ENVDLLYKFLT 140
+G +PLHL + N H +++ L+ + V + G TPLH A E V++L K+
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKY-- 102
Query: 141 ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+ + + T L++AA++ L++++V+L + VN D +
Sbjct: 103 --GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A D F T LH+ + GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGA---DVNANDWFGITPLHLVVNNGHLEI-IEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--- 131
+ ++ G +PLHLA H ++V L+ + V +G TPLH AE+
Sbjct: 68 KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-VNAMDYQGYTPLHLAAEDGHL 126
Query: 132 --VDLLYKF 138
V++L K+
Sbjct: 127 EIVEVLLKY 135
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 19 QRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK 76
++L EAA+AG D + L+ DA D + P LH+AA++GH+ +E++
Sbjct: 4 KKLLEAARAGQDDEVRILMANGADANAYDHYGRTP-----LHMAAAVGHLEI-VEVLLRN 57
Query: 77 PSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ + G +PLHLA H ++V L+ + V + G+TPL+ A
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLYLAA 109
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 72 IMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVA 129
I+ + A + YG +PLH+A H ++V L+ RN V + G TPLH A
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAA 76
Query: 130 -----ENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI 184
E V++L K+ + T LY+AA L++++V+L VN D
Sbjct: 77 SLGHLEIVEVLLKY----GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132
Query: 185 INR 187
+
Sbjct: 133 FGK 135
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
T LH+AAS+GH+ +E++ + ++ G +PL+LA H ++V L+
Sbjct: 70 TPLHLAASLGHLEI-VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ D + T LH+AAS GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNATDNDGY--TPLHLAASNGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+ + G +PLHLA H ++V L+ + V +G TPLH A+
Sbjct: 68 KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAK 122
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVAENVDL-LYKFLTACP 143
G +PLHLA N H ++V L+ +N V + G+TPLH A L + + L
Sbjct: 47 GYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 144 KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
+ T L++AAK L++++V+L VN D
Sbjct: 104 ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQD 143
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 87 GCSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVAENV-DLLYKFLTACP 143
G +PLHLA +N H ++V L+ D N + +G TPLH AEN + K L +
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 144 KSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+T L++AA+N +V+K++L N D R
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGR 137
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 114 VRVQGREGVTPLHYVAENV-DLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172
V +G TPLH AEN + K L + +T L++AA+N +V+K++
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 173 LGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVR 209
L ++ N KD +G LH++ + V+
Sbjct: 90 L------SQGADPNAKDSDGKTPLHLAAENGHKEVVK 120
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 15 SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
S ++L EAA+AG D + L+ D D P LH+AA GH+ +E+
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTP-----LHLAAYSGHLEI-VEV 65
Query: 73 MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+ + + +G +PLHLA H ++V L+ + V +G+TPLH A+
Sbjct: 66 LLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAK 122
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 87 GCSPLHLALQNSHTQMVLRLI----DVDRNLVRVQGREGVTPLHYVA-----ENVDLLYK 137
G +PLHLA + H ++V L+ DVD + V G TPLH A E V++L K
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF-----GYTPLHLAAYWGHLEIVEVLLK 101
Query: 138 FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+ + T L++AAK L++++V+L VN D +
Sbjct: 102 ----NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-ENVDLLYKFLTACPKS 145
G +PLH A + H ++V LI + V + +G TPLHY A E + K L +
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
+ T L+ AAK +++K+++ VN D R
Sbjct: 96 VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGR 137
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 94 ALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHYVA-ENVDLLYKFLTACPKSILQVT 150
A +N + V LI+ D N GR TPLHY A E + K L + +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR---TPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 151 IRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
T L+ AAK +++K++ ++K +N KD +G LH
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLL------ISKGADVNAKDSDGRTPLH 108
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDL-LYKFLTACPKS 145
G +PLH A +N H + V +L+ + V + ++G TPLH A+N + K L A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 146 ILQVTIRKETALYVAAKNDKLKVLKVM 172
+ + T ++A KN +++K++
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 54 DTHLHIAASMGHVNFALEIMRL--KPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDR 111
+T LH AA GH A E+ +L K + +++ G +PLHLA +N H ++V +L+
Sbjct: 10 NTPLHNAAKNGH---AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 112 NLVRVQGREGVTPLHYVAEN 131
V + ++G TP H +N
Sbjct: 66 ADVNARSKDGNTPEHLAKKN 85
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 21 LNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA 80
L+ AA+ G+ + + +L+ + A D + +T LH+AA GH ++++ K +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHAEI-VKLLLAKGADV 68
Query: 81 RKQNQYGCSPLHLALQNSHTQMVLRLIDV 109
+++ G +P HLA +N H ++V +L+D
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIV-KLLDA 96
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ +D+ T LH+AA +GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNALDEDGL--TPLHLAAQLGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMV 103
+ ++ +G +PLHLA H ++V
Sbjct: 68 KYGADVNAEDNFGITPLHLAAIRGHLEIV 96
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EAA AG D + L+ A ++ D T LH+AA+ G + +E++ +
Sbjct: 8 KKLLEAAAAGQDDEVRILMANGAD-VNATDDNGL--TPLHLAAANGQLEI-VEVLLKNGA 63
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ G +PLHLA + H ++V L+ + V R G TPLH A
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAA 113
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ D T LH+AA+ GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGL--TPLHLAATYGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA 129
+ + G +PLHLA H ++V L+ D N V G TPLH A
Sbjct: 68 KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD---TPLHLAA 121
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 87 GCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA-----ENVDLLYKFL 139
G +PLHLA H ++V L+ D N + + G TPLH A E V++L K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS---TPLHLAALIGHLEIVEVLLKH- 102
Query: 140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
+ V +T L++AA L++++V+L VN D
Sbjct: 103 ---GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQM 102
DT LH+AA MGH+ +E++ + Q+++G + +++ N + +
Sbjct: 114 DTPLHLAAIMGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EAA+AG D + L+ A ++ D T LH+AA+ GH+ +E++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNATDASGL--TPLHLAATYGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA 129
+ + G +PLHLA H ++V L+ D N V G TPLH A
Sbjct: 68 KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD---TPLHLAA 121
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 87 GCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA-----ENVDLLYKFL 139
G +PLHLA H ++V L+ D N + + G TPLH A E V++L K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS---TPLHLAALIGHLEIVEVLLKH- 102
Query: 140 TACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD 183
+ V +T L++AA L++++V+L VN D
Sbjct: 103 ---GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQM 102
DT LH+AA MGH+ +E++ + Q+++G + +++ N + +
Sbjct: 114 DTPLHLAAIMGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 8 LQHQKIKSRTDQ----RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM 63
L + + +RTDQ L+ A AG+ + + E + + ++ D + + LHIAAS
Sbjct: 27 LADKSLATRTDQDSRTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGW--SPLHIAASA 83
Query: 64 GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
G + ++ + +K + NQ GC+PLH A + ++ + L++ N
Sbjct: 84 G-XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 8 LQHQKIKSRTDQ----RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM 63
L + + +RTDQ L+ A AG+ + + E + + ++ D + + LHIAAS
Sbjct: 27 LADKSLATRTDQDSRTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGW--SPLHIAASA 83
Query: 64 GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112
G ++ + +K + NQ GC+PLH A + ++ + L++ N
Sbjct: 84 GRDEI-VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
DT LH+AA GH+ +E++ + + YG +PLHLA H ++V L+
Sbjct: 81 DTPLHLAALYGHLEI-VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTAC 142
++ G +PLHLA H ++V L+ + V + G TPLH A LY L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAA-----LYGHL--- 93
Query: 143 PKSILQVTIRKE-----------TALYVAAKNDKLKVLKVMLGWLRYVNKDDIINR 187
I++V ++ T L++AA L++++V+L + VN D +
Sbjct: 94 --EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGK 147
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 6 YTLQHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYL--IDQIDQVPFVDTHLHIAASM 63
+ ++HQ +S L+ AA+AG+VD + L+ A + + + P ++ AA
Sbjct: 4 FKMEHQNKRSP----LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME-----AAEN 54
Query: 64 GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT 123
H+ A++ + + ++ G + LHLA + H ++V L+ + V Q G T
Sbjct: 55 NHLE-AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113
Query: 124 PLHYVAE--NVDLLYKFLT 140
P+ + E +VDL+ L+
Sbjct: 114 PMIWATEYKHVDLVKLLLS 132
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 123 TPLHYVAE--NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVN 180
+PLH AE +VD+ + + A +I + + T L AA+N+ L+ +K + +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYL------IK 65
Query: 181 KDDIINRKDDEGSILLHISISR 202
+++ KD EGS LH++ +
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKK 87
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 57 LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
LH AA G V+ A EI+ N +G SPLH+A + + V+ + D + V +
Sbjct: 148 LHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTL 205
Query: 117 QGREGVTPLHYVAEN 131
+ +EG TPL + N
Sbjct: 206 KNKEGETPLQCASLN 220
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 8 LQHQKIKSRTDQ----RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM 63
L + + +RTDQ L+ A AG+ + + E + + ++ D + + LHIAAS
Sbjct: 28 LADKSLATRTDQDSRTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGW--SPLHIAASA 84
Query: 64 GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT 123
G ++ K + NQ GC+PLH A + ++ + L++ N E T
Sbjct: 85 GRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-AT 142
Query: 124 PLHYVAE--NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
+H A N+ +++ L + +Q T T L++A ++++ K+++
Sbjct: 143 AMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLV 193
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 8 LQHQKIKSRTDQ----RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASM 63
L + + +RTDQ L+ A AG+ + + E + + ++ D + + LHIAAS
Sbjct: 27 LADKSLATRTDQDSRTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGW--SPLHIAASA 83
Query: 64 GHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT 123
G ++ K + NQ GC+PLH A + ++ + L++ N E T
Sbjct: 84 GRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE-AT 141
Query: 124 PLHYVAE--NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173
+H A N+ +++ L + +Q T T L++A ++++ K+++
Sbjct: 142 AMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACDEERVEEAKLLV 192
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EA +AG D + L+ A ++ +D T LH+AA GH+ +E++ +
Sbjct: 16 KKLLEATRAGQDDEVRILMANGAD-VNAMDDAGV--TPLHLAAKRGHLEI-VEVLLKHGA 71
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
+ +G +PLHLA H ++V L++ + V Q + G T +N
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDN 123
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA 129
+++ G +PLHLA N H ++V L+ D N + G TPLH VA
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE---TPLHLVA 88
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
++L EA +AG D + L+ A ++ +D T LH+AA GH+ +E++ +
Sbjct: 16 KKLLEATRAGQDDEVRILMANGAD-VNAMDDAGV--TPLHLAAKRGHLEI-VEVLLKHGA 71
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLID 108
++ +G +PLHLA H ++V L++
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 84 NQYGCSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLHYVA 129
+ G +PLHLA + H ++V L+ D N + GR TPLH A
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR---TPLHLAA 88
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 51 PFV----DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRL 106
PF +T LHIA+ G + ++E + S ++ G +PLH A + H ++V L
Sbjct: 4 PFTNHRGETLLHIASIKGDIP-SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 107 IDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLT 140
+ + LV G + +PLH A+N VD++ L+
Sbjct: 63 LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S ++L EA +AG D + L+ A ++ +D T LH+AA GH+ +E++
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGAD-VNAMDDAGV--TPLHLAAKRGHLEI-VEVLL 67
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
+ + +G +PLHLA H ++V L++ + V Q + G T +N
Sbjct: 68 KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDISIDN 123
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-------GVTPLHY-VAE 130
A + ++ G +PLH+A+ + V RL+ NL + GRE TPLH V
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLV----NLFQQGGRELDIYNNLRQTPLHLAVIT 56
Query: 131 NVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDD 190
+ + + L S + + +TA ++A ++ L+ +L D + ++
Sbjct: 57 TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNY 114
Query: 191 EGSILLHISISRKLESTVR 209
+G LH++++ + + TV+
Sbjct: 115 DGLTALHVAVNTECQETVQ 133
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
DT LH+AAS GH + ++++ K N++G PLH A Q+ L+ + L
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-ANGAL 130
Query: 114 VRVQGREGVTPL 125
V + + G P+
Sbjct: 131 VSICNKYGEMPV 142
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 57 LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
LH A G + +E++ ++ + N+ +PLHLA + H +V +L+ ++ V
Sbjct: 43 LHWACREGR-SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 117 QGREGVTPLHYVA 129
G PLHY
Sbjct: 102 N-EHGNVPLHYAC 113
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 54 DTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNL 113
DT LH+AAS GH + ++++ K N++G PLH A Q+ L+ + L
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-ANGAL 125
Query: 114 VRVQGREGVTPL 125
V + + G P+
Sbjct: 126 VSICNKYGEMPV 137
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 57 LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
LH A G + +E++ ++ + N+ +PLHLA + H +V +L+ ++ V
Sbjct: 38 LHWACREGR-SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96
Query: 117 QGREGVTPLHYVA 129
G PLHY
Sbjct: 97 N-EHGNVPLHYAC 108
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 89 SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA--ENVDLLYKFLTACPKSI 146
SPL LA + + Q + +L+ + V +G G T LH A +N++ + A P+ +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 147 LQVTIRK----ETALYVAAKNDKLKVLKVML 173
+ + +TAL++A N + +++ +L
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALL 95
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA-----ENVDLLYK 137
++ G +PLHLA N H ++V L+ ++ V G+TPL A E V++L K
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIVEVLLK 101
Query: 138 FLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLH 197
+ + T L++AA L++++V+L N D +N +D G
Sbjct: 102 ----NGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-----KNGAD-VNAQDKFGKTAFD 151
Query: 198 ISISRKLE 205
ISI E
Sbjct: 152 ISIDNGNE 159
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 33 LYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92
+ E++ ++ ++ +D T L +AA GH+ +E++ + + G +PLH
Sbjct: 62 IVEVLLKNGADVNAVDHAGM--TPLRLAALFGHLEI-VEVLLKNGADVNANDMEGHTPLH 118
Query: 93 LALQNSHTQMV 103
LA H ++V
Sbjct: 119 LAAMFGHLEIV 129
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLHYVA 129
+++YG +PL+LA + H ++V L+ +N V + G TPLH A
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAA 88
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 33 LYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92
+ E++ ++ ++ +D + F T LH+AA +GH+ A E++ + Q+++G +
Sbjct: 62 IVEVLLKNGADVNAVDAIGF--TPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFD 118
Query: 93 LALQNSHTQM 102
+++ N + +
Sbjct: 119 ISIGNGNEDL 128
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+N G +PLH+A+ + +MV L D +L + + G TPLH E
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE 130
+N G +PLH+A+ + +MV L D +L + + G TPLH E
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 15 SRTDQRLNEAAQAGNVDALYELI--WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEI 72
S ++L EAA+AG D + L D D P LH+AA +GH+ +E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTP-----LHLAAMLGHLEI-VEV 65
Query: 73 MRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
+ + G +PLHLA H ++V L+
Sbjct: 66 LLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 86 YGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+G +PLHLA H ++V L+ + V G G TPLH A
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAA 88
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 42/205 (20%)
Query: 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS 78
Q EA A + + +A ++D + + +TH + + G + L
Sbjct: 158 QSFPEAYSAAKKHGMKVIYGLEANIVDDGVPIAYNETHRRLGSGSGPFHVTL-------- 209
Query: 79 FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREG----------------V 122
QN+ G L + SH Q R+ + R+++ V+ R+G +
Sbjct: 210 --LAQNETGLKNLFKLVSLSHIQYFHRVPRIPRSVL-VKHRDGLLVGSGCDKGELFDNLI 266
Query: 123 TPLHYVAENVDLLYKFLTACPKSILQVTIR----------KETALYVAAKNDKLKVLKVM 172
E++ Y FL P + + I K + A +KL + V
Sbjct: 267 QKAPEEVEDIARFYDFLEVHPPDVYKPLIEMDYVKDEEMIKNIIRSIVALGEKLDIPVVA 326
Query: 173 LGWLRYVNKDDIINRKDDEGSILLH 197
G + Y+N +D I RK IL+H
Sbjct: 327 TGNVHYLNPEDKIYRK-----ILIH 346
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 45 DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL 104
D+ +Q+P LH AAS+G + + L S Q++ G +PL AL H +
Sbjct: 137 DKFNQIP-----LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 105 RLID 108
L++
Sbjct: 192 LLVE 195
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 45 DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL 104
D+ +Q+P LH AAS+G + + L S Q++ G +PL AL H +
Sbjct: 137 DKFNQIP-----LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 105 RLID 108
L++
Sbjct: 192 LLVE 195
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 45 DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL 104
D+ +Q+P LH AAS+G + + L S Q++ G +PL AL H +
Sbjct: 137 DKFNQIP-----LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191
Query: 105 RLID 108
L++
Sbjct: 192 LLVE 195
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 46 QIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLR 105
++D+ P LH+AAS GH N +E++ + ++ + LH A +++H ++V
Sbjct: 65 KVDRTP-----LHMAASEGHANI-VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
Query: 106 LI 107
LI
Sbjct: 119 LI 120
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 87 GCSPLHLALQNSH---TQMVLRLIDVDRNLVRVQGREGVTPLHYVA-ENVDLLYKFLTAC 142
G SPLHLA Q H T+++LR V R+ R TPLH A E + + L
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLR-AGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKH 89
Query: 143 PKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175
+ + K TAL+ A +++ +V+++++ +
Sbjct: 90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S D++L EAA+AG+V+ + +L + I+ T LH AA V+ +E +
Sbjct: 10 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ--STPLHFAAGYNRVSV-VEYLL 66
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ +++ G PLH A H + V L+ +V V TPLH A
Sbjct: 67 QHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAA 120
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S D++L EAA+AG+V+ + +L + I+ T LH AA V+ +E +
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ--STPLHFAAGYNRVSV-VEYLL 64
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ +++ G PLH A H + V L+ +V V TPLH A
Sbjct: 65 QHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAA 118
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMR 74
S D++L EAA+AG+V+ + +L + I+ T LH AA V+ +E +
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQ--STPLHFAAGYNRVSV-VEYLL 62
Query: 75 LKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
+ +++ G PLH A H + V L+ +V V TPLH A
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAA 116
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 18 DQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP 77
D L+EAA+ GN+ L E + ++ ++ +D+ T L+ A GH + +E + +P
Sbjct: 74 DNPLHEAAKRGNLSWLRECL-DNRVGVNGLDKAG--STALYWACHGGHKDI-VEXLFTQP 129
Query: 78 SFA-RKQNQYGCSPLHLALQNSHTQMVLRLI 107
+ +QN+ G + LH A + +V L+
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLLYKFLTA 141
N G + LH A+ HT++V L+ N V +G TPLH A NV + KFL
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVC-KFLVE 124
Query: 142 CPKSILQVT 150
++ +T
Sbjct: 125 SGAAVFAMT 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAE--NVDLLYKFLTA 141
N G + LH A+ HT++V L+ N V +G TPLH A NV + KFL
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVC-KFLVE 124
Query: 142 CPKSILQVT 150
++ +T
Sbjct: 125 SGAAVFAMT 133
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 57 LHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV 116
LH+AA G + + ++ + A +N PLHLA Q H Q+V L+D + +
Sbjct: 90 LHVAALHGRADL-IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK- 147
Query: 117 QGREGVTPLHYVA 129
+ G TPL Y
Sbjct: 148 KDLSGNTPLIYAC 160
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129
++ G +PLHLA H ++V L+ + V +G TPLH A
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGAD-VNAHDNDGSTPLHLAA 88
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-----VDLLYKFLTA 141
G P+HLA+Q HT V+ + + +L R R G+TPL + VD+L + A
Sbjct: 107 GALPIHLAVQEGHT-AVVSFLAAESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHMVA 164
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131
+++ G +PLHLA +N H ++V L++ + V Q + G T +N
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDN 100
>pdb|2Y6P|A Chain A, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|B Chain B, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
pdb|2Y6P|C Chain C, Evidence For A Two-Metal-Ion-Mechanism In The
Kdo-Cytidylyltransferase Kdsb
Length = 234
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 89 SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQ 148
+P L + V+R +DVD ++ QG E P Y E++ L+++ L + +
Sbjct: 66 TPSDLPSGSDRVLYVVRDLDVDL-IINYQGDE---PFVY-EEDIKLIFRELEKGERVV-- 118
Query: 149 VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-INRKDDEGSILLHISISRKLEST 207
RK+ Y + + +KV+ G+ Y ++ I RK+D L H+ I + T
Sbjct: 119 TLARKDKEAY--ERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKET 176
Query: 208 VRNFGGREGSSLATVEIADYLK 229
+ FG S L +E + L+
Sbjct: 177 LMEFGAMPPSKLEQIEGLEQLR 198
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPL 125
G P+HLA+Q HT V+ + + +L R R G+TPL
Sbjct: 101 GALPIHLAVQEGHT-AVVSFLAAESDLHRRDAR-GLTPL 137
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA----------ENVDLLY 136
G + LH ++ +++ +V +L+D V Q R G +P+ A E V L+
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 137 KFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196
+ K+ + +TAL +A + ++ V+K +L + +N +DD+GS L
Sbjct: 171 RLGNINAKA----SQAGQTALMLAVSHGRVDVVKALLAC------EADVNVQDDDGSTAL 220
>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
pdb|4EUT|B Chain B, Structure Of Bx-795 Complexed With Unphosphorylated Human
Tbk1 Kinase- Uld Domain
Length = 396
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 104 LRLIDV---DRNLVRVQGREGVTPLHYVAENVDLLYKFLTA--CPKSILQVTIRKETALY 158
LR +DV + +++ + + L + E +K L CP L + + + Y
Sbjct: 48 LRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAY 107
Query: 159 VAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195
+++ L VL+ ++G + ++ ++ I++R G+I+
Sbjct: 108 GLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIM 144
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107
T LH AA + + ++ K S KQ++ G +P+ LA Q ++V LI
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,039,932
Number of Sequences: 62578
Number of extensions: 301430
Number of successful extensions: 833
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 154
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)