Query 022200
Match_columns 301
No_of_seqs 312 out of 4579
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 5.9E-39 2E-43 270.8 17.1 203 13-224 6-234 (253)
2 2dzn_A Probable 26S proteasome 100.0 3.3E-38 1.1E-42 261.5 20.4 197 17-222 2-217 (228)
3 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-38 4.3E-43 270.1 17.4 195 16-223 2-209 (261)
4 1oy3_D Transcription factor in 100.0 1.5E-38 5.1E-43 271.7 17.6 205 13-224 5-269 (282)
5 3b7b_A Euchromatic histone-lys 100.0 9.5E-38 3.2E-42 260.4 20.4 201 14-224 8-221 (237)
6 3aji_A 26S proteasome non-ATPa 100.0 2E-37 6.8E-42 257.4 21.6 198 16-223 5-215 (231)
7 1k1a_A B-cell lymphoma 3-encod 100.0 2E-37 6.9E-42 258.8 20.8 200 13-223 5-226 (241)
8 3d9h_A CDNA FLJ77766, highly s 100.0 6.2E-37 2.1E-41 263.0 20.2 197 13-222 55-264 (285)
9 1s70_B 130 kDa myosin-binding 100.0 2.3E-37 8E-42 266.8 17.3 204 12-226 35-278 (299)
10 4b93_B Ankyrin repeat domain-c 100.0 9.4E-38 3.2E-42 265.9 14.1 202 14-223 8-228 (269)
11 1wdy_A 2-5A-dependent ribonucl 100.0 1.6E-36 5.5E-41 258.9 20.3 232 16-263 4-262 (285)
12 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-36 9.6E-41 265.1 22.3 204 13-227 54-327 (351)
13 1n11_A Ankyrin; clathrin, BAND 100.0 3.5E-36 1.2E-40 273.1 20.7 200 13-223 10-222 (437)
14 2xai_A ASB-9, ankyrin repeat a 100.0 2E-36 6.8E-41 256.5 17.2 197 13-222 32-247 (261)
15 3d9h_A CDNA FLJ77766, highly s 100.0 4.2E-36 1.4E-40 257.9 16.5 236 10-262 8-263 (285)
16 3ljn_A Hypothetical protein; a 100.0 3.3E-36 1.1E-40 267.0 15.8 203 9-224 12-255 (364)
17 1n11_A Ankyrin; clathrin, BAND 100.0 1.9E-35 6.4E-40 268.3 20.7 199 14-223 44-255 (437)
18 1wdy_A 2-5A-dependent ribonucl 100.0 5.1E-35 1.7E-39 249.6 21.5 200 14-224 36-264 (285)
19 2f8y_A Notch homolog 1, transl 100.0 3.2E-35 1.1E-39 242.8 19.2 179 14-202 22-201 (223)
20 2rfa_A Transient receptor pote 100.0 5.3E-35 1.8E-39 243.0 19.7 182 16-207 2-219 (232)
21 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-35 6E-40 249.5 16.7 179 14-202 54-233 (253)
22 4g8k_A 2-5A-dependent ribonucl 100.0 5.6E-35 1.9E-39 256.4 20.3 200 15-223 23-283 (337)
23 4gpm_A Engineered protein OR26 100.0 6.2E-35 2.1E-39 231.1 17.2 158 19-187 6-164 (169)
24 3utm_A Tankyrase-1; tankyrase, 100.0 7.9E-35 2.7E-39 255.8 19.4 229 15-262 22-321 (351)
25 3aji_A 26S proteasome non-ATPa 100.0 8.2E-35 2.8E-39 241.6 18.2 179 13-202 36-215 (231)
26 3eu9_A Huntingtin-interacting 100.0 1.1E-34 3.7E-39 241.6 18.5 201 13-223 5-220 (240)
27 2dzn_A Probable 26S proteasome 100.0 9.3E-35 3.2E-39 240.7 16.8 182 13-202 32-218 (228)
28 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-36 3.9E-41 254.0 5.1 201 12-222 3-228 (236)
29 3b7b_A Euchromatic histone-lys 100.0 1.5E-34 5.1E-39 241.0 17.2 180 13-202 40-220 (237)
30 2fo1_E LIN-12 protein; beta-ba 100.0 4.3E-35 1.5E-39 260.9 14.6 199 15-223 123-356 (373)
31 3hra_A Ankyrin repeat family p 100.0 3.9E-34 1.3E-38 232.5 19.0 179 14-202 2-188 (201)
32 2f8y_A Notch homolog 1, transl 100.0 7.9E-35 2.7E-39 240.4 14.9 188 28-224 2-202 (223)
33 3ljn_A Hypothetical protein; a 100.0 1.8E-34 6.3E-39 255.8 18.1 199 13-224 49-300 (364)
34 4b93_B Ankyrin repeat domain-c 100.0 1.7E-35 5.9E-40 251.9 10.2 178 14-202 49-228 (269)
35 1oy3_D Transcription factor in 100.0 2.2E-34 7.5E-39 245.8 15.5 179 14-202 42-268 (282)
36 4g8k_A 2-5A-dependent ribonucl 100.0 2E-33 6.7E-38 246.6 21.3 203 16-224 58-312 (337)
37 1k1a_A B-cell lymphoma 3-encod 100.0 5.5E-34 1.9E-38 237.9 15.3 180 13-202 42-226 (241)
38 2etb_A Transient receptor pote 100.0 3.5E-34 1.2E-38 241.8 14.1 177 17-202 2-231 (256)
39 2pnn_A Transient receptor pote 100.0 2.7E-34 9.2E-39 244.8 12.2 194 11-211 7-260 (273)
40 3kea_A K1L; tropism, ANK repea 100.0 9.3E-34 3.2E-38 243.3 15.3 176 13-202 27-205 (285)
41 3eu9_A Huntingtin-interacting 100.0 1.4E-32 4.7E-37 228.9 17.9 179 14-202 39-220 (240)
42 3v30_A DNA-binding protein rfx 100.0 9.8E-33 3.4E-37 219.0 16.2 169 17-195 2-171 (172)
43 3jxi_A Vanilloid receptor-rela 100.0 2.1E-33 7.3E-38 237.4 11.7 187 14-207 2-247 (260)
44 4gpm_A Engineered protein OR26 100.0 2.2E-32 7.6E-37 216.4 16.5 140 55-202 6-146 (169)
45 2rfa_A Transient receptor pote 100.0 5.8E-32 2E-36 224.6 17.8 167 52-224 2-208 (232)
46 2fo1_E LIN-12 protein; beta-ba 100.0 1.6E-32 5.6E-37 244.3 15.1 180 13-202 162-356 (373)
47 1sw6_A Regulatory protein SWI6 100.0 1.2E-32 4.1E-37 240.9 10.3 170 14-200 128-324 (327)
48 1s70_B 130 kDa myosin-binding 100.0 2E-32 6.9E-37 235.9 11.4 180 13-202 69-275 (299)
49 3v30_A DNA-binding protein rfx 100.0 3E-31 1E-35 210.3 16.2 157 53-216 2-171 (172)
50 4hbd_A KN motif and ankyrin re 100.0 6E-32 2.1E-36 230.9 12.3 178 17-202 76-260 (276)
51 3v31_A Ankyrin repeat family A 100.0 3.8E-31 1.3E-35 208.7 15.4 155 16-175 2-157 (167)
52 3hra_A Ankyrin repeat family p 100.0 9.7E-31 3.3E-35 212.4 17.8 165 52-223 4-188 (201)
53 2rfm_A Putative ankyrin repeat 100.0 3.6E-31 1.2E-35 213.7 15.2 158 13-175 31-189 (192)
54 3kea_A K1L; tropism, ANK repea 100.0 3.2E-31 1.1E-35 227.4 15.2 184 25-224 7-206 (285)
55 2y1l_E Darpin-8.4; hydrolase-i 100.0 1E-30 3.4E-35 206.9 16.2 157 14-175 11-168 (169)
56 1sw6_A Regulatory protein SWI6 100.0 6.4E-32 2.2E-36 236.3 9.6 186 20-222 100-325 (327)
57 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-31 5E-36 223.0 11.2 178 13-200 41-227 (236)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.1E-31 1.4E-35 207.3 13.0 155 15-175 3-159 (162)
59 2vge_A RELA-associated inhibit 100.0 2.8E-33 9.7E-38 232.7 0.3 185 33-225 1-200 (229)
60 1awc_B Protein (GA binding pro 100.0 1.4E-30 4.7E-35 202.7 14.5 150 17-172 2-152 (153)
61 2rfm_A Putative ankyrin repeat 100.0 2.8E-30 9.5E-35 208.5 15.4 143 52-202 34-177 (192)
62 3f6q_A Integrin-linked protein 100.0 1E-30 3.5E-35 208.8 12.8 167 16-192 4-171 (179)
63 3v31_A Ankyrin repeat family A 100.0 4.4E-30 1.5E-34 202.6 16.2 143 52-202 2-145 (167)
64 2etb_A Transient receptor pote 100.0 8.9E-31 3E-35 220.9 12.2 161 13-175 39-243 (256)
65 2pnn_A Transient receptor pote 100.0 1.9E-30 6.6E-35 220.9 14.0 176 14-197 51-272 (273)
66 3twr_A Tankyrase-2; ankyrin re 100.0 1.7E-30 5.9E-35 204.6 11.3 157 14-175 5-162 (165)
67 1ycs_B 53BP2, P53BP2; ankyrin 100.0 2.9E-31 1E-35 221.9 7.0 184 15-222 3-190 (239)
68 1bd8_A P19INK4D CDK4/6 inhibit 100.0 9.2E-30 3.2E-34 198.4 14.8 152 17-175 2-155 (156)
69 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.8E-29 6E-34 199.8 15.5 143 52-202 13-156 (169)
70 2vge_A RELA-associated inhibit 100.0 8.7E-32 3E-36 223.7 0.2 175 14-202 18-198 (229)
71 1awc_B Protein (GA binding pro 100.0 2.8E-29 9.5E-34 195.3 14.3 141 53-202 2-143 (153)
72 3jxi_A Vanilloid receptor-rela 100.0 8.1E-30 2.8E-34 215.4 11.9 159 15-175 44-247 (260)
73 3f6q_A Integrin-linked protein 100.0 2.1E-29 7.1E-34 201.1 13.5 144 52-202 4-148 (179)
74 4hbd_A KN motif and ankyrin re 100.0 2.2E-29 7.6E-34 215.0 14.0 158 13-175 107-272 (276)
75 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.6E-29 9.1E-34 197.0 13.1 141 53-202 5-147 (162)
76 3twr_A Tankyrase-2; ankyrin re 100.0 1.1E-29 3.8E-34 199.9 10.4 144 52-202 7-151 (165)
77 3t8k_A Uncharacterized protein 100.0 2.7E-29 9.1E-34 201.9 12.4 153 17-175 6-176 (186)
78 1bd8_A P19INK4D CDK4/6 inhibit 100.0 6.5E-29 2.2E-33 193.6 13.3 141 53-202 2-143 (156)
79 1bi7_B P16INK4A, MTS1, multipl 99.9 3.2E-28 1.1E-32 190.0 8.3 139 52-199 11-151 (156)
80 2aja_A Ankyrin repeat family p 99.9 1.8E-28 6.1E-33 217.5 3.6 151 16-175 91-247 (376)
81 1d9s_A Cyclin-dependent kinase 99.9 3.9E-27 1.3E-31 179.5 9.5 121 52-175 11-133 (136)
82 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2E-27 6.9E-32 198.5 7.5 157 52-217 4-176 (239)
83 3t8k_A Uncharacterized protein 99.9 2.2E-27 7.5E-32 190.7 6.9 141 53-202 6-164 (186)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 7.8E-27 2.7E-31 182.1 8.5 141 14-160 9-151 (156)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-25 4.9E-30 167.8 14.0 121 53-175 2-123 (126)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 7.7E-26 2.6E-30 172.3 12.4 122 52-175 13-135 (136)
87 1d9s_A Cyclin-dependent kinase 99.9 8.1E-26 2.8E-30 172.2 8.4 127 13-145 8-136 (136)
88 3ui2_A Signal recognition part 99.9 2.5E-25 8.6E-30 186.4 9.4 141 13-175 41-182 (244)
89 3deo_A Signal recognition part 99.9 4.3E-25 1.5E-29 176.8 10.3 140 13-174 40-180 (183)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 2E-24 6.9E-29 164.4 12.8 125 14-143 11-136 (136)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.4E-24 8.3E-29 161.0 12.6 125 16-145 1-126 (126)
92 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-24 4.8E-29 187.4 12.8 136 54-202 152-296 (301)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-24 4.2E-29 165.7 8.7 119 53-173 10-129 (137)
94 2b0o_E UPLC1; arfgap, structur 99.9 2.1E-24 7E-29 186.3 10.0 142 17-166 151-299 (301)
95 3aaa_C Myotrophin, protein V-1 99.9 2.4E-24 8.2E-29 161.0 8.9 106 53-160 7-113 (123)
96 3ui2_A Signal recognition part 99.9 1.5E-25 5.3E-30 187.7 2.3 154 17-202 15-170 (244)
97 3ehr_A Osteoclast-stimulating 99.9 1.3E-24 4.3E-29 179.3 7.6 133 52-192 72-206 (222)
98 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-24 9.1E-29 163.8 8.5 127 13-144 6-133 (137)
99 3aaa_C Myotrophin, protein V-1 99.9 8E-24 2.7E-28 158.2 10.3 112 84-202 4-116 (123)
100 3deo_A Signal recognition part 99.9 3.5E-23 1.2E-27 165.7 11.8 126 84-222 41-168 (183)
101 2aja_A Ankyrin repeat family p 99.9 1.1E-24 3.7E-29 193.2 2.7 165 19-207 67-247 (376)
102 3ehr_A Osteoclast-stimulating 99.9 1.1E-23 3.6E-28 173.7 8.3 135 14-153 70-206 (222)
103 3lvq_E ARF-GAP with SH3 domain 99.9 1.6E-22 5.5E-27 186.3 14.9 136 53-202 132-277 (497)
104 3jue_A Arfgap with coiled-coil 99.9 1.1E-22 3.7E-27 179.8 12.7 145 53-202 199-347 (368)
105 3lvq_E ARF-GAP with SH3 domain 99.9 7.8E-22 2.7E-26 181.7 12.8 137 18-162 133-276 (497)
106 1dcq_A PYK2-associated protein 99.9 1.9E-21 6.6E-26 165.8 13.5 162 13-175 62-260 (278)
107 2l6b_A NR1C; ankyrin, consensu 99.9 5.9E-22 2E-26 146.1 8.3 107 83-196 5-112 (115)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.7E-21 9.4E-26 137.0 10.0 88 87-175 2-90 (93)
109 1dcq_A PYK2-associated protein 99.9 3.5E-21 1.2E-25 164.2 12.4 125 19-145 132-263 (278)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.3E-21 1.5E-25 136.0 10.4 91 17-111 2-92 (93)
111 3jue_A Arfgap with coiled-coil 99.8 2.8E-21 9.5E-26 170.7 10.5 145 17-164 199-348 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 5.8E-21 2E-25 140.7 8.4 103 52-156 8-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.7E-18 6E-23 126.5 7.9 88 84-172 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.1E-17 3.8E-22 122.2 8.6 84 53-138 24-108 (110)
115 3mkq_B Coatomer subunit alpha; 88.9 6.4 0.00022 30.1 11.2 133 15-175 6-140 (177)
116 3zrh_A Ubiquitin thioesterase 52.3 28 0.00097 30.3 6.0 52 23-74 28-90 (454)
117 1gp8_A Protein (scaffolding pr 43.0 17 0.00056 19.9 2.0 19 19-37 15-33 (40)
118 3zrh_A Ubiquitin thioesterase 27.8 1.2E+02 0.0042 26.4 6.0 51 59-109 28-91 (454)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.9e-39 Score=270.81 Aligned_cols=203 Identities=20% Similarity=0.200 Sum_probs=157.9
Q ss_pred cccCCCHHHHHHHHhC-------------CHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch
Q 022200 13 IKSRTDQRLNEAAQAG-------------NVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF 79 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 79 (301)
.+..|.||||+|+..| +.++++.|++.|+++....+. .|+||||+|+..|+.+++++|++.++++
T Consensus 6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 83 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR--TGETALHLAARYSRSDAAKRLLEASADA 83 (253)
T ss_dssp ----------------------------------------------CCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 3577999999999988 899999999999998765444 5999999999999999999999999876
Q ss_pred hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHH
Q 022200 80 ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALY 158 (301)
Q Consensus 80 ~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh 158 (301)
+.+|..|.||||+|+..|+.+++++|++.++..++.++..|.||||+|+.. ...++++|++.|++++.+|..|+||||
T Consensus 84 -~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~ 162 (253)
T 1yyh_A 84 -NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162 (253)
T ss_dssp -TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 788999999999999999999999999999855999999999999999999 888999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200 159 VAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI 224 (301)
Q Consensus 159 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~ 224 (301)
+|+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|+++ .+|..|+||+++|+...
T Consensus 163 ~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 234 (253)
T 1yyh_A 163 WAAAVNNVDAAVVLLKN------GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 234 (253)
T ss_dssp HHHHHTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence 99999999999999996 999999999999999999998 67776 78999999999996653
No 2
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-38 Score=261.52 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=180.5
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhC--CchhhhcCCCCCcHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK--PSFARKQNQYGCSPLHLA 94 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpLh~A 94 (301)
|+||||.|++.|+.++++.|++.+++.....+. .|+||||+|+..|+.+++++|++.+ .+.....+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ--DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCC--CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 679999999999999999999999987664444 5999999999999999999999998 555443789999999999
Q ss_pred HHCCCHHHHHHHhhcC--CccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 95 LQNSHTQMVLRLIDVD--RNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 95 ~~~~~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+..|+.+++++|++.| ++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999998 77 889999999999999999 8889999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcc-cccccccCCCCcHHHHHHHH-------HHH-hh-----hhhCCCCchhhhhhh
Q 022200 172 MLGWLRYVNKD-DIINRKDDEGSILLHISISR-------KLE-ST-----VRNFGGREGSSLATV 222 (301)
Q Consensus 172 Ll~~~~~~~~~-~~~~~~d~~g~tpLh~A~~~-------~Ll-~~-----~~n~~g~tpl~~a~~ 222 (301)
|+++ | ++++.+|..|+||||+|+.. +|+ +. .+|.+|+||+++|..
T Consensus 159 Ll~~------g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 159 LCGL------GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHTT------TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred HHhc------CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 9986 7 99999999999999999988 677 54 889999999999954
No 3
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=270.07 Aligned_cols=195 Identities=20% Similarity=0.126 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
.|.||||+|++.|+.++++.|++.|.+++.... .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA---DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 478999999999999999999999988765443 4999999999999999999999998876 788999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
..|+.+++++|++.|++ ++. +..|.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCC-SSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999998 654 55699999999999 8889999999999999999999999999999999999999999
Q ss_pred hhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 175 WLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 175 ~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
+ |++++. |..|+||||+|+.. +|++. .+|.+|+||+|+|...
T Consensus 156 ~------g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 156 S------GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209 (261)
T ss_dssp H------TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred c------CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccc
Confidence 7 899985 89999999999998 67776 8899999999999743
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-38 Score=271.66 Aligned_cols=205 Identities=18% Similarity=0.100 Sum_probs=171.3
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..|.||||+|++.|+.++|+.|++.+++.......+..|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~ 83 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALH 83 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 4678999999999999999999999998874322222336999999999999999999999999887 788999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCc----------------------------------------------cceecCCCCCchhH
Q 022200 93 LALQNSHTQMVLRLIDVDRN----------------------------------------------LVRVQGREGVTPLH 126 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~----------------------------------------------~~~~~d~~g~tpLh 126 (301)
+|+..|+.+++++|++.+++ .++.+|..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 99999999999999997754 15667889999999
Q ss_pred HHHhc-HHHHHHHHHhCCcchhccccC-CCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH--
Q 022200 127 YVAEN-VDLLYKFLTACPKSILQVTIR-KETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-- 202 (301)
Q Consensus 127 ~A~~~-~~~~~~lL~~~~~~~~~~d~~-g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-- 202 (301)
+|+.. ...++++|++.|++++..+.. |+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA------GADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHTSSC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc------CCCCcccccCCCCHHHHHHHcCC
Confidence 99999 889999999999999999865 99999999999999999999996 999999999999999999988
Q ss_pred -----HHHhh-----hhhCCCCchhhhhhhhh
Q 022200 203 -----KLEST-----VRNFGGREGSSLATVEI 224 (301)
Q Consensus 203 -----~Ll~~-----~~n~~g~tpl~~a~~~~ 224 (301)
+|+++ .+|..|.||+++|....
T Consensus 238 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 238 PILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHHHTTCCCCCCC--------------
T ss_pred cHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 67777 88999999999996544
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.5e-38 Score=260.37 Aligned_cols=201 Identities=22% Similarity=0.196 Sum_probs=185.0
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||.|+..|+.++++.|++.|.+++.... .|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE---DQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL 83 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC---CCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence 46689999999999999999999999998765443 4999999999999999999999998876 7789999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.++..++..+..|.||||+|+.. ..+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 99999999999999999444899999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200 173 LGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI 224 (301)
Q Consensus 173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~ 224 (301)
+++ |++++.+|..|.||||+|+.. +|+++ .+|.+|+||+|+|+...
T Consensus 164 l~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 164 LAA------KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp HTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred HHc------CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence 986 999999999999999999998 66666 78999999999996653
No 6
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-37 Score=257.43 Aligned_cols=198 Identities=26% Similarity=0.314 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
.++++||.|++.|+++.++.|++.++......+. .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCC--CCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence 4678999999999999999999998876554444 5999999999999999999999998876 778999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999 899999999999999999 8889999999999999999999999999999999999999999
Q ss_pred hhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 175 WLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 175 ~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
+ |++++.+|..|+||||+|+.. +|+++ .+|..|+||+++|...
T Consensus 161 ~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 215 (231)
T 3aji_A 161 Y------KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215 (231)
T ss_dssp T------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHH
T ss_pred c------CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhh
Confidence 6 999999999999999999988 67776 7899999999999654
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2e-37 Score=258.79 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=181.1
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHH----cChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIW----EDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC 88 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 88 (301)
.+..|.||||+|++.|+.++++.|++ .+.+++.... .|.||||+|+..|+.+++++|++.++++ +.++..|.
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 80 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN---LRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ 80 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc---cCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence 46789999999999999999999997 4555443332 5999999999999999999999999876 77899999
Q ss_pred cHHHHHHHCCCHHHHHHHhhcCC----ccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHHH
Q 022200 89 SPLHLALQNSHTQMVLRLIDVDR----NLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAAK 162 (301)
Q Consensus 89 tpLh~A~~~~~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~~ 162 (301)
||||+|+..|+.+++++|++.++ + ++..|..|.||||+|+.. ..+++++|++.|++++..+ ..|.||||+|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLD-LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCcccc-ccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 99999999999999999999987 5 888999999999999999 8899999999999999998 889999999999
Q ss_pred cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 163 NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 163 ~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
.|+.+++++|+++ |++++.+|..|+||||+|+.. +|+++ .+|..|+||+|+|...
T Consensus 160 ~~~~~~v~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 226 (241)
T 1k1a_A 160 NNSLSMVQLLLQH------GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226 (241)
T ss_dssp TTCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence 9999999999996 999999999999999999998 67766 7899999999999654
No 8
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=263.04 Aligned_cols=197 Identities=19% Similarity=0.116 Sum_probs=180.1
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..|.||||+|+..|+.++++.|++.|.+++.... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus 55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~ 130 (285)
T 3d9h_A 55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA---DHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLF 130 (285)
T ss_dssp SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT---TCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHH
T ss_pred CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence 356788999999999999999999999988765443 4999999999999999999999998876 788999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.+++ ++. +..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~-~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGAS-VQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKK 208 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-SSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 99999999999999999998 665 44599999999999 8889999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhh
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATV 222 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~ 222 (301)
|++. |++++. |..|+||||+|+.. +|+++ .+|.+|+||+|+|+.
T Consensus 209 Ll~~------ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 209 LLES------GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp HHHT------TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred HHHC------CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence 9996 889984 99999999999988 67766 789999999999974
No 9
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-37 Score=266.81 Aligned_cols=204 Identities=23% Similarity=0.188 Sum_probs=178.2
Q ss_pred ccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200 12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPL 91 (301)
Q Consensus 12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 91 (301)
.++..+.++|+.|+..|+.++|+.|++.|++++.... .|.||||+|+..|+.+++++|++.++++ +.+|..|.|||
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL 110 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV---DGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPL 110 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT---TCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence 3445678999999999999999999999998765443 4999999999999999999999999876 78899999999
Q ss_pred HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHH-HHHhCCcchhc---------------------
Q 022200 92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYK-FLTACPKSILQ--------------------- 148 (301)
Q Consensus 92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~-lL~~~~~~~~~--------------------- 148 (301)
|+|+..|+.+++++|++.|++ ++..|..|.||||+|+.. ...+++ ++...+.+++.
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC
Confidence 999999999999999999999 899999999999999988 444444 44455555543
Q ss_pred -----cccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhC
Q 022200 149 -----VTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNF 211 (301)
Q Consensus 149 -----~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~ 211 (301)
.+..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|+++ .+|.
T Consensus 190 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~ 263 (299)
T 1s70_B 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263 (299)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence 456899999999999999999999986 999999999999999999998 67777 7899
Q ss_pred CCCchhhhhhhhhhh
Q 022200 212 GGREGSSLATVEIAD 226 (301)
Q Consensus 212 ~g~tpl~~a~~~~~~ 226 (301)
.|+||+|+|......
T Consensus 264 ~g~t~l~~A~~~~~~ 278 (299)
T 1s70_B 264 VGQTAFDVADEDILG 278 (299)
T ss_dssp TSCCTTTSCCSGGGH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999765433
No 10
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=265.88 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=157.8
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhh-----cCCCCCChHHHHHHHcCCH-HHHHHHHHhCCchhhhcCCCC
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQI-----DQVPFVDTHLHIAASMGHV-NFALEIMRLKPSFARKQNQYG 87 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g 87 (301)
+.++.++|+.||+.|++++|+.||+.+.+..... .....|.||||.|+..++. .++++|++.|.++ +.+|.+|
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G 86 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG 86 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence 3445689999999999999999999887643211 1122589999999988876 4788999998876 8889999
Q ss_pred CcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCH
Q 022200 88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL 166 (301)
Q Consensus 88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 166 (301)
+||||+|+..|+.+++++|++.+++ ++.++..|.||+|+|+.. ...++++|++.|++++.+|..|+||||+|+..|+.
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~ 165 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH 165 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 9999999999999999999999999 999999999999999999 88899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 167 KVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 167 ~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
+++++|+++ |++++.+|..|+||||+|+.. +|+++ .+|.+|+||||+|+..
T Consensus 166 ~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 166 ELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp GGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTT
T ss_pred HHHHHHHHC------CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhC
Confidence 999999996 999999999999999999998 77777 8899999999999754
No 11
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-36 Score=258.90 Aligned_cols=232 Identities=21% Similarity=0.141 Sum_probs=184.1
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
++.++|+.|++.|+.++++.|++.|++++...+. .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 4678999999999999999999998887655333 4889999999999999999999988776 677888999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhcc----------ccCCCcHHHHHHHcC
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQV----------TIRKETALYVAAKND 164 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~----------d~~g~t~Lh~A~~~g 164 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.. +..|.||||+|+..|
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 99999999999999988 888899999999999988 788888888898888876 777889999999999
Q ss_pred CHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-----------HHHhh-----hhhCCCCchhhhhhhhhhhhh
Q 022200 165 KLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-----------KLEST-----VRNFGGREGSSLATVEIADYL 228 (301)
Q Consensus 165 ~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-----------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~ 228 (301)
+.+++++|++. .+++++.+|..|+||||+|+.. +|++. .+|..|+||||+|+..... .
T Consensus 160 ~~~~v~~Ll~~-----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-~ 233 (285)
T 1wdy_A 160 HVEVLKILLDE-----MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL-G 233 (285)
T ss_dssp CHHHHHHHHHT-----SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH-H
T ss_pred CHHHHHHHHHh-----cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH-H
Confidence 99999999873 3888888999999999998865 45555 6788899999998765322 1
Q ss_pred hhhhhhhhhhhhhhhccccchhhhcchhHHHHHHH
Q 022200 229 KRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAIL 263 (301)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~l 263 (301)
....++.+ .+......+..+.|++++|+.
T Consensus 234 ~v~~Ll~~------~g~~~~~~~~~g~t~l~~A~~ 262 (285)
T 1wdy_A 234 LVQRLLEQ------EHIEINDTDSDGKTALLLAVE 262 (285)
T ss_dssp HHHHHHHS------SSCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHhc------cCCCccccCCCCCcHHHHHHH
Confidence 12222221 223334445667788888764
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-36 Score=265.09 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=182.3
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++|+.|++.|.+++.... .|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~ 129 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK---GGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLH 129 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC---CCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence 356788999999999999999999999998765543 4999999999999999999999998877 778999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecC------------------------------------------------------
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQG------------------------------------------------------ 118 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d------------------------------------------------------ 118 (301)
+|+..|+.+++++|++.|++ ++..+
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 130 EAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence 99999999999999999987 55443
Q ss_pred CCCCchhHHHHhc----HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCc
Q 022200 119 REGVTPLHYVAEN----VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSI 194 (301)
Q Consensus 119 ~~g~tpLh~A~~~----~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~t 194 (301)
..|.||||+|+.. ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+|
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------ga~~n~~d~~g~t 282 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH------GAKMNALDSLGQT 282 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCC
Confidence 5567889988876 57899999999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhhh
Q 022200 195 LLHISISR-------KLEST-----VRNFGGREGSSLATVEIADY 227 (301)
Q Consensus 195 pLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~~ 227 (301)
|||+|+.. +|+++ .+|..|+||+++|......+
T Consensus 283 ~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~~~~~ 327 (351)
T 3utm_A 283 ALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQI 327 (351)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhHHHHHH
Confidence 99999998 67777 88999999999996554443
No 13
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.5e-36 Score=273.06 Aligned_cols=200 Identities=26% Similarity=0.240 Sum_probs=154.4
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..|.||||+|+..|+.++|++|++.|.+++.... .|.||||+|+..|+.+++++|++.++++ +.++..|.||||
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~---~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 85 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLH 85 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS---CCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHH
Confidence 456678888888888888888888888877654433 4788888888888888888888887766 677888888888
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.|++ ++..+..|.||||+|+.. ..+++++|++.+++++..+..|.||||+|+..|+.+++++
T Consensus 86 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 86 CAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 88888888888888888888 788888888888888887 7777777777888877778888888888888888888888
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
|++. +++++..|..|.||||+|+.. +|++. ..+.+|.||+|+|+..
T Consensus 165 Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 222 (437)
T 1n11_A 165 LLER------DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ 222 (437)
T ss_dssp HHHT------TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT
T ss_pred HHhC------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence 8875 777788888888888888776 45544 4456677777777543
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=256.54 Aligned_cols=197 Identities=19% Similarity=0.153 Sum_probs=179.1
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++++.|++.|.+++.... .|.||||+|+..|+.+++++|++.++++ +. +..|.||||
T Consensus 32 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~ 106 (261)
T 2xai_A 32 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA---DWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIH 106 (261)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CC-CCCCCCHHH
Confidence 356789999999999999999999999988765543 4999999999999999999999999876 33 566999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++. +..|.||||+|+..|+.+++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~ 184 (261)
T 2xai_A 107 EAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACL 184 (261)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHH
Confidence 99999999999999999999 999999999999999999 88899999999999995 8899999999999999999999
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH-----HHHhh-------------hhhCCCCchhhhhhh
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR-----KLEST-------------VRNFGGREGSSLATV 222 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-----~Ll~~-------------~~n~~g~tpl~~a~~ 222 (301)
|+++ |++++.+|.+|+||||+|+.. .|+++ .+|..|+||+|.+.+
T Consensus 185 Ll~~------gad~~~~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~ 247 (261)
T 2xai_A 185 LMDF------GADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247 (261)
T ss_dssp HHHT------TCCTTCCCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGG
T ss_pred HHHc------CCCCCCcCCCCCChhhhccccccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcc
Confidence 9996 999999999999999999866 44443 789999999999854
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=257.86 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=166.5
Q ss_pred ccccccCCCHHHHHHHHhCCHHHHHHHHHcChhh--------hhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhh
Q 022200 10 HQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYL--------IDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR 81 (301)
Q Consensus 10 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 81 (301)
++.+...+.|+||+|+..|+.+.+..++..++.. .........|+||||+|+..|+.+++++|++.+.++ +
T Consensus 8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~ 86 (285)
T 3d9h_A 8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-N 86 (285)
T ss_dssp ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-C
T ss_pred ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-C
Confidence 3455678999999999999998888877665431 011112236999999999999999999999998876 7
Q ss_pred hcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200 82 KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVA 160 (301)
Q Consensus 82 ~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A 160 (301)
.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.. ..|.||||+|
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A 164 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEA 164 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHH
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHH
Confidence 8899999999999999999999999999999 999999999999999999 888999999999998864 4599999999
Q ss_pred HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh----hhhCCCCchhhhhhhhhhhhhh
Q 022200 161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST----VRNFGGREGSSLATVEIADYLK 229 (301)
Q Consensus 161 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~----~~n~~g~tpl~~a~~~~~~~~~ 229 (301)
+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|++. ..|..|.||||+|+..... ..
T Consensus 165 ~~~g~~~~v~~Ll~~------g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~-~~ 237 (285)
T 3d9h_A 165 ARRGHVECVNSLIAY------GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASE-EL 237 (285)
T ss_dssp HHHTCHHHHHHHHHT------TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCH-HH
T ss_pred HHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH-HH
Confidence 999999999999996 999999999999999999988 66666 4578999999999765332 22
Q ss_pred hhhhhhhhhhhhhhccccchhhhcchhHHHHHH
Q 022200 230 RGLIWRQKVLLFFYRSSLSITDENRNAPLVVAI 262 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~ 262 (301)
...++. .+......+..+.|++++|+
T Consensus 238 v~~Ll~-------~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 238 ACLLMD-------FGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHHHH-------TTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHHH-------CCCCCCCcCCCCCCHHHHhc
Confidence 222222 23334444556666666653
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.3e-36 Score=267.02 Aligned_cols=203 Identities=21% Similarity=0.199 Sum_probs=180.0
Q ss_pred cccccccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCC
Q 022200 9 QHQKIKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGC 88 (301)
Q Consensus 9 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 88 (301)
.....+..+.||||+|+..|+.++|+.|++.|.+++.... .|.||||+|+..|+.+++++|++.+++. .+..|.
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~ 85 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR---FGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQ 85 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTB
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC---CCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCC
Confidence 3444567789999999999999999999999988765443 5999999999999999999999999844 345899
Q ss_pred cHHHHHHHCCCHHHHHHHhhc----CCcccee-----------------cCCCCCchhHHHHhc---HHHHHHHHHhCCc
Q 022200 89 SPLHLALQNSHTQMVLRLIDV----DRNLVRV-----------------QGREGVTPLHYVAEN---VDLLYKFLTACPK 144 (301)
Q Consensus 89 tpLh~A~~~~~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~tpLh~A~~~---~~~~~~lL~~~~~ 144 (301)
||||+|+..|+.+++++|++. +++ ++. +|..|.||||+|+.. ..+++++|++.|+
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga 164 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence 999999999999999999998 666 555 888999999999987 5789999999999
Q ss_pred chhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccc-----cccccCCCCcHHHHHHHH-------HHHhh-----
Q 022200 145 SILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-----INRKDDEGSILLHISISR-------KLEST----- 207 (301)
Q Consensus 145 ~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~-----~~~~d~~g~tpLh~A~~~-------~Ll~~----- 207 (301)
+++..|..|+||||+|+..|+.+++++|+++ +++ ++.+|..|+||||+|+.. +|+++
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~ 238 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDT------VPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN 238 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------CSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhc------ccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999997 777 999999999999999988 67776
Q ss_pred hhhCCCCchhhhhhhhh
Q 022200 208 VRNFGGREGSSLATVEI 224 (301)
Q Consensus 208 ~~n~~g~tpl~~a~~~~ 224 (301)
.+|..|+||||+|+...
T Consensus 239 ~~d~~g~tpL~~A~~~g 255 (364)
T 3ljn_A 239 MEDNEHTVPLYLSVRAA 255 (364)
T ss_dssp CCCTTSCCHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHhC
Confidence 78999999999997753
No 17
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-35 Score=268.31 Aligned_cols=199 Identities=24% Similarity=0.281 Sum_probs=160.4
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||.|++.|+.+++++|++.|++++.... .|+||||+|+..|+.+++++|+++++++ +..+..|.||||+
T Consensus 44 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~ 119 (437)
T 1n11_A 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK---DDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHI 119 (437)
T ss_dssp SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT---TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC---CCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence 45678899999999999999999998887654433 4889999999999999999999988776 6778888888888
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.+++ .+..+..|.||||+|+.. ...++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus 120 A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 198 (437)
T 1n11_A 120 AAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198 (437)
T ss_dssp HHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8888888888888888887 777788888888888888 77788888888888888888888888888888888888888
Q ss_pred HHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 173 LGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
++. +++++.++..|.||||+|+.. .|++. ..+..|.||||+|+..
T Consensus 199 l~~------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 255 (437)
T 1n11_A 199 LPR------GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255 (437)
T ss_dssp GGG------TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HhC------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC
Confidence 875 777777777788888888776 45554 4566777777777553
No 18
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-35 Score=249.59 Aligned_cols=200 Identities=18% Similarity=0.138 Sum_probs=181.6
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||+|+..|+.++++.|++.|.++..... .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 111 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK---NGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFME 111 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHH
Confidence 45678999999999999999999999988765443 4999999999999999999999999876 7889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceec----------CCCCCchhHHHHhc-HHHHHHHHHhC-CcchhccccCCCcHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQ----------GREGVTPLHYVAEN-VDLLYKFLTAC-PKSILQVTIRKETALYVAA 161 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~-~~~~~~lL~~~-~~~~~~~d~~g~t~Lh~A~ 161 (301)
|+..|+.+++++|++.|++ ++.. +..|.||||+|+.. ..+++++|++. |++++..|..|.||||+|+
T Consensus 112 A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 9999999999999999998 7766 78899999999999 77788888876 9999999999999999999
Q ss_pred HcCC----HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHh-h-----hhhCCCCchhhhhhhhh
Q 022200 162 KNDK----LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLES-T-----VRNFGGREGSSLATVEI 224 (301)
Q Consensus 162 ~~g~----~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~-~-----~~n~~g~tpl~~a~~~~ 224 (301)
..++ .+++++|+++ |++++.+|..|+||||+|+.. +|++ . .+|.+|+||+|+|+...
T Consensus 191 ~~~~~~~~~~i~~~Ll~~------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~ 264 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264 (285)
T ss_dssp HCSCTTTHHHHHHHHHHT------TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred HccccchHHHHHHHHHHc------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence 9999 8999999996 999999999999999999998 6776 3 78899999999997653
No 19
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.2e-35 Score=242.81 Aligned_cols=179 Identities=22% Similarity=0.163 Sum_probs=168.1
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||+|++.|+.++++.|++.|.++..... .|+||||+|+..|+.+++++|++.++...+.++..|.||||+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 98 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 98 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence 56789999999999999999999999988765433 599999999999999999999999886668889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.+++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 99 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 177 (223)
T 2f8y_A 99 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999 999999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 173 LGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+++ |++++.+|..|.||||+|+..
T Consensus 178 l~~------ga~~~~~~~~g~t~l~~A~~~ 201 (223)
T 2f8y_A 178 LDH------FANRDITDHMDRLPRDIAQER 201 (223)
T ss_dssp HHT------TCCTTCCCTTCCCHHHHHHHT
T ss_pred HHc------CCCCccccccCCCHHHHHHHh
Confidence 996 999999999999999999988
No 20
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.3e-35 Score=243.04 Aligned_cols=182 Identities=20% Similarity=0.217 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHc-ChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchh----hhcCCCCCcH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWE-DAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFA----RKQNQYGCSP 90 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~tp 90 (301)
.|.||||.|++.|+.++++.|++. |.+++.... .|+||||+|+..|+.+++++|++.+++.. +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGA---MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC---CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 478999999999999999999998 777655433 59999999999999999999999988753 4457799999
Q ss_pred HHHHHHCCCHHHHHHHhhcCCccceecCC-------------CCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcH
Q 022200 91 LHLALQNSHTQMVLRLIDVDRNLVRVQGR-------------EGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETA 156 (301)
Q Consensus 91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~ 156 (301)
||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+.. ..+++++|++.|++++.+|..|+||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 9999999999999999999998 777665 799999999999 8899999999999999999999999
Q ss_pred HHHHHHcCCHHHH----HHHHHhhhhcCccccc------ccccCCCCcHHHHHHHH-------HHHhh
Q 022200 157 LYVAAKNDKLKVL----KVMLGWLRYVNKDDII------NRKDDEGSILLHISISR-------KLEST 207 (301)
Q Consensus 157 Lh~A~~~g~~~~~----~~Ll~~~~~~~~~~~~------~~~d~~g~tpLh~A~~~-------~Ll~~ 207 (301)
||+|+..|+.+++ ++|+++ |+++ +.+|..|+||||+|+.. +|+++
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~------g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSY------DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHT------TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhc------CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999999999988 888886 7766 68999999999999988 56665
No 21
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-35 Score=249.54 Aligned_cols=179 Identities=22% Similarity=0.163 Sum_probs=169.5
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||+|++.|+.++|+.|++.|++++.... .|+||||+|+..|+.+++++|++.++...+.++..|.||||+
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence 57789999999999999999999999998765543 499999999999999999999999986668889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 131 A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L 209 (253)
T 1yyh_A 131 AARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209 (253)
T ss_dssp HHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999 999999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 173 LGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 173 l~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+++ |++++.+|..|+||||+|+..
T Consensus 210 l~~------ga~~~~~d~~g~tpl~~A~~~ 233 (253)
T 1yyh_A 210 LDH------FANRDITDHMDRLPRDIAQER 233 (253)
T ss_dssp HHT------TCCTTCCCTTCCCHHHHHHHT
T ss_pred HHc------CCCccccccCCCCHHHHHHHc
Confidence 997 999999999999999999988
No 22
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.6e-35 Score=256.44 Aligned_cols=200 Identities=19% Similarity=0.157 Sum_probs=145.3
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch---------------
Q 022200 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--------------- 79 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------- 79 (301)
.+++|+||.||+.|++++|+.||+.|++++...+. .|+||||+|+..|+.++|++|+++|+++
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~--~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE--GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC--CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence 44678999999999999999999999998765443 4899999999999999999999998754
Q ss_pred -----------------hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCcccee----------cCCCCCchhHHHHhc-
Q 022200 80 -----------------ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRV----------QGREGVTPLHYVAEN- 131 (301)
Q Consensus 80 -----------------~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~----------~d~~g~tpLh~A~~~- 131 (301)
++.+|..|.||||+|+..|+.+++++|++.|++ ++. .+..|.||||+|+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCC
Confidence 234556677777777777777777777777766 433 234567777777776
Q ss_pred HHHHHHHHH-hCCcchhccccCCCcHHHHHHHcCC----HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH----
Q 022200 132 VDLLYKFLT-ACPKSILQVTIRKETALYVAAKNDK----LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR---- 202 (301)
Q Consensus 132 ~~~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~---- 202 (301)
..+++++|+ +.|++++.+|..|.|++|.++..+. ..++++|+++ |++++.+|..|+||||+|+..
T Consensus 180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~------gad~n~~d~~g~t~L~~a~~~~~~~ 253 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH------GADVNVRGERGKTPLILAVEKKHLG 253 (337)
T ss_dssp CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT------TCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHhhhhH
Confidence 555556555 4577777777777777776665433 3466666664 777777777777777777766
Q ss_pred ---HHHhh------hhhCCCCchhhhhhhh
Q 022200 203 ---KLEST------VRNFGGREGSSLATVE 223 (301)
Q Consensus 203 ---~Ll~~------~~n~~g~tpl~~a~~~ 223 (301)
.|++. .+|.+|+||||+|+..
T Consensus 254 ~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~ 283 (337)
T 4g8k_A 254 LVQRLLEQEHIEINDTDSDGKTALLLAVEL 283 (337)
T ss_dssp HHHHHHTSTTCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHHHHhcCCcccCcCCCCCCHHHHHHHc
Confidence 44432 5667777777777654
No 23
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=6.2e-35 Score=231.15 Aligned_cols=158 Identities=28% Similarity=0.317 Sum_probs=144.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCC
Q 022200 19 QRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNS 98 (301)
Q Consensus 19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~ 98 (301)
++|+.||+.|+.++|+.||+.|++++.... .|+||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~---~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDS---DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence 579999999999999999999999866544 5999999999999999999999999887 888999999999999999
Q ss_pred CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhh
Q 022200 99 HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLR 177 (301)
Q Consensus 99 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~ 177 (301)
+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 82 ~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-- 158 (169)
T 4gpm_A 82 HKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-- 158 (169)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC--
Confidence 99999999999999 999999999999999999 88999999999999999999999999999999999999999996
Q ss_pred hcCccccccc
Q 022200 178 YVNKDDIINR 187 (301)
Q Consensus 178 ~~~~~~~~~~ 187 (301)
|++++.
T Consensus 159 ----GA~ie~ 164 (169)
T 4gpm_A 159 ----GGWLEH 164 (169)
T ss_dssp ----------
T ss_pred ----CCCcCC
Confidence 888764
No 24
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=7.9e-35 Score=255.85 Aligned_cols=229 Identities=22% Similarity=0.201 Sum_probs=191.8
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHHHc-ChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 15 SRTDQRLNEAAQAGNVDALYELIWE-DAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
..+.++|+.|++.|+.+.|+.|+.. +.+++.. +. .|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 97 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DG--RKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHN 97 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-ST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHH
Confidence 4567899999999999999999976 4443333 22 5999999999999999999999999876 8889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc----------------------
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT---------------------- 150 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d---------------------- 150 (301)
|+..|+.+++++|++.|++ ++..|..|.||||+|+.. ..+++++|++.|++++..+
T Consensus 98 A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~ 176 (351)
T 3utm_A 98 ACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence 9999999999999999999 999999999999999999 8889999999999887644
Q ss_pred --------------------------------cCCCcHHHHHHHc---CCHHHHHHHHHhhhhcCcccccccccCCCCcH
Q 022200 151 --------------------------------IRKETALYVAAKN---DKLKVLKVMLGWLRYVNKDDIINRKDDEGSIL 195 (301)
Q Consensus 151 --------------------------------~~g~t~Lh~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tp 195 (301)
..|.||||+|+.. +..+++++|++. |++++.+|..|+||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~------g~~~~~~~~~g~t~ 250 (351)
T 3utm_A 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK------GANVNEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHT------TCCTTCCCTTCCCH
T ss_pred hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHc------CCCcCCcCCCCCCH
Confidence 4577999999998 557899999996 99999999999999
Q ss_pred HHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhhhhhhhhhhhhhhhhhhhhhccccchhhhcchhHHHHHH
Q 022200 196 LHISISR-------KLEST-----VRNFGGREGSSLATVEIADYLKRGLIWRQKVLLFFYRSSLSITDENRNAPLVVAI 262 (301)
Q Consensus 196 Lh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~va~ 262 (301)
||+|+.. +|+++ .+|..|+||||+|+.... ......++. .+......+..+.|++.+|.
T Consensus 251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~-~~~v~~Ll~-------~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH-LQTCRLLLS-------YGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC-HHHHHHHHH-------TTCCTTCCCTTSCCHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc-HHHHHHHHH-------cCCCCCCcCCCCCChhhhhh
Confidence 9999998 67766 689999999999976532 222333333 34445555667778777763
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.2e-35 Score=241.63 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=168.0
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++++.|++.|.+++.... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 111 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD---AGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLH 111 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC---CCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 357789999999999999999999999988755433 4999999999999999999999999876 778999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 112 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 112 YAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence 99999999999999999999 899999999999999999 8889999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|+++ |++++.+|..|.||||+|+..
T Consensus 191 Ll~~------ga~~~~~~~~g~t~l~~A~~~ 215 (231)
T 3aji_A 191 LVTQ------GASIYIENKEEKTPLQVAKGG 215 (231)
T ss_dssp HHHT------TCCSCCCCTTSCCHHHHSCHH
T ss_pred HHHC------CCCCCCCCCCCCCHHHHHHhh
Confidence 9996 999999999999999999876
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=241.57 Aligned_cols=201 Identities=19% Similarity=0.203 Sum_probs=183.4
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
++..+.++|+.|++.|+.++++.|++.|.++..... .|.||||+|+..|+.+++++|++.++......+..|.||||
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK---ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC---CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence 456678899999999999999999999988755433 59999999999999999999999999886676777999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC-HHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK-LKVLK 170 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~~~ 170 (301)
+|+..|+.+++++|++.|++ ++.++..|.||||+|+.. ...++++|++.|++++..+..|.||||+|+..++ .++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 99999999999999999999 899999999999999999 8889999999999999999999999999997766 89999
Q ss_pred HHHHhhhhcCcccccccccC-CCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 171 VMLGWLRYVNKDDIINRKDD-EGSILLHISISR-------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 171 ~Ll~~~~~~~~~~~~~~~d~-~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
+|++. +++++..+. .|+||||+|+.. +|+++ .+|..|+||+++|...
T Consensus 161 ~L~~~------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 220 (240)
T 3eu9_A 161 LLLTF------NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220 (240)
T ss_dssp HHHHT------TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHhc------CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 99986 999999997 999999999998 67776 7889999999999665
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.3e-35 Score=240.69 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=164.9
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhC--CchhhhcCCCCCcH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLK--PSFARKQNQYGCSP 90 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tp 90 (301)
.+..+.||||+|+..|+.++++.|++.+++..........|.||||+|+..|+.+++++|++.+ +++ +.++..|.||
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCH
Confidence 4577899999999999999999999999443222212235999999999999999999999997 554 7789999999
Q ss_pred HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCCHHH
Q 022200 91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDKLKV 168 (301)
Q Consensus 91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~~~~ 168 (301)
||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.| ++++.+|..|+||||+|+..|+.++
T Consensus 111 L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 9999999999999999999999 999999999999999999 888999999999 9999999999999999999999999
Q ss_pred HHHHH-HhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 169 LKVML-GWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 169 ~~~Ll-~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+++|+ ++ |++++.+|..|.||||+|+..
T Consensus 190 v~~Ll~~~------ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 190 AVLLVEKY------GAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHHHH------CCCSCCBCTTSCBGGGGCSST
T ss_pred HHHHHHhc------CCCCCccCCCCCcHHHHHHHH
Confidence 99999 65 999999999999999999765
No 28
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-36 Score=254.00 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=173.9
Q ss_pred ccccCCCHHHHHHHHhCCHHHHHHHHHcChh----hhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCC
Q 022200 12 KIKSRTDQRLNEAAQAGNVDALYELIWEDAY----LIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYG 87 (301)
Q Consensus 12 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g 87 (301)
..+..|.||||+|+..|+.++++.|++.+.. ++.. + ..|+||||+|+..|+.+++++|++.++++ +.+|..|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 78 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-N--NLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRG 78 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-C--TTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-C--CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCC
Confidence 4578899999999999999999999988764 3222 2 25999999999999999999999998876 7789999
Q ss_pred CcHHHHHHHCCCHHHHHHHhhcCCc-----cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhcccc-CCCcHHHHH
Q 022200 88 CSPLHLALQNSHTQMVLRLIDVDRN-----LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTI-RKETALYVA 160 (301)
Q Consensus 88 ~tpLh~A~~~~~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~-~g~t~Lh~A 160 (301)
.||||+|+..|+.+++++|++.+++ .++..+..|.||||+|+.. ...++++|++.|++++.++. .|.||||+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999864 2577888999999999999 88899999999999999998 999999999
Q ss_pred HHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-------hhhCCCCchhhhhhh
Q 022200 161 AKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-------VRNFGGREGSSLATV 222 (301)
Q Consensus 161 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-------~~n~~g~tpl~~a~~ 222 (301)
+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|+++ ..+.+|.||.+.+..
T Consensus 159 ~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKC------GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp HHTTCHHHHHHHHTT------TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred HHcCCHHHHHHHHHc------CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 999999999999996 999999999999999999987 66666 678899999998743
No 29
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-34 Score=240.98 Aligned_cols=180 Identities=22% Similarity=0.253 Sum_probs=168.3
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++++.|++.|.++..... .|.||||+|+..|+.+++++|++.++...+.++..|.||||
T Consensus 40 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~ 116 (237)
T 3b7b_A 40 CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA---EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT---TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC---CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHH
Confidence 356788999999999999999999999988655433 49999999999999999999999986666888999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++
T Consensus 117 ~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (237)
T 3b7b_A 117 WATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL 195 (237)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH
Confidence 99999999999999999999 899999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|+++ |++++.+|.+|+||||+|+..
T Consensus 196 Ll~~------gad~~~~d~~g~t~l~~A~~~ 220 (237)
T 3b7b_A 196 FLSR------DSDVTLKNKEGETPLQCASLN 220 (237)
T ss_dssp HHTT------TCCTTCCCTTSCCHHHHSCTT
T ss_pred HHHc------CCCCCccCCCCCCHHHHHHHH
Confidence 9986 999999999999999999876
No 30
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.3e-35 Score=260.93 Aligned_cols=199 Identities=19% Similarity=0.169 Sum_probs=179.0
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHH--------HcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC
Q 022200 15 SRTDQRLNEAAQAGNVDALYELI--------WEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY 86 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 86 (301)
..+.||||+|+..|+.++++.|+ +.|.+++.... .|.||||+|+..|+.+++++|++.++++ +.+|..
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~---~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~ 198 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC---DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKS 198 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC---CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCC
Confidence 56889999999999998887776 67877755433 5999999999999999999999999887 788999
Q ss_pred CCcHHHHHHHCCCHHHHHHHhhcC---CccceecCCCCCchhHHHHhc----HHHHHHHHHhCCcchhc--------ccc
Q 022200 87 GCSPLHLALQNSHTQMVLRLIDVD---RNLVRVQGREGVTPLHYVAEN----VDLLYKFLTACPKSILQ--------VTI 151 (301)
Q Consensus 87 g~tpLh~A~~~~~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh~A~~~----~~~~~~lL~~~~~~~~~--------~d~ 151 (301)
|.||||+|+..|+.+++++|++.+ ++ ++..|..|.||||+|+.. ...++++|++.|++++. .|.
T Consensus 199 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~ 277 (373)
T 2fo1_E 199 ERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY 277 (373)
T ss_dssp CCCHHHHHHHTTCHHHHHHHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHhcCccccC-hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccc
Confidence 999999999999999999999988 56 889999999999999976 67899999999999886 577
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200 152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSL 219 (301)
Q Consensus 152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~ 219 (301)
.|.||||+|+..|+.+++++|++. .+++++.+|..|+||||+|+.. +|+++ .+|..|+||+++
T Consensus 278 ~g~t~Lh~A~~~g~~~~v~~Ll~~-----~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~ 352 (373)
T 2fo1_E 278 KGRTALHYAAQVSNMPIVKYLVGE-----KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352 (373)
T ss_dssp CCCCTHHHHHSSCCHHHHHHHHHH-----SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhCCHHHHHHHHHh-----cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHH
Confidence 899999999999999999999985 2499999999999999999998 67776 789999999999
Q ss_pred hhhh
Q 022200 220 ATVE 223 (301)
Q Consensus 220 a~~~ 223 (301)
|+..
T Consensus 353 A~~~ 356 (373)
T 2fo1_E 353 AQAN 356 (373)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9764
No 31
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.9e-34 Score=232.54 Aligned_cols=179 Identities=19% Similarity=0.126 Sum_probs=162.6
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
+..+.++||.|+..|+.+.++.|++.++ +++.. +. .|.||||+|+..|+.+++++|++.++++ +.++..|.||||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~ 77 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DT--EGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYL 77 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CT--TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 4568899999999999999999999887 54333 32 5999999999999999999999999877 788999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC-cchhccccCCCcHHHHHHHcCC-----
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP-KSILQVTIRKETALYVAAKNDK----- 165 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~-~~~~~~d~~g~t~Lh~A~~~g~----- 165 (301)
+|+..|+.+++++|++.+...++.+|..|.||||+|+.. ...++++|++.| ++++.+|..|+||||+|+..++
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 999999999999999665544999999999999999999 888888888888 9999999999999999999998
Q ss_pred HHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 166 LKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 166 ~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 158 ~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 158 QDIVKLLMEN------GADQSIKDNSGRTAMDYANQK 188 (201)
T ss_dssp HHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHC------CCCCCccCCCCCCHHHHHHHc
Confidence 9999999996 999999999999999999988
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.9e-35 Score=240.43 Aligned_cols=188 Identities=20% Similarity=0.219 Sum_probs=170.6
Q ss_pred CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHh
Q 022200 28 GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLI 107 (301)
Q Consensus 28 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 107 (301)
|+.+++++|++.|+++....+. .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDR--TGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTT--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCC--CCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 6788899999999988765444 5999999999999999999999998876 778999999999999999999999999
Q ss_pred hcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccc
Q 022200 108 DVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIIN 186 (301)
Q Consensus 108 ~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~ 186 (301)
+.++..++.++..|.||||+|+.. ..+++++|++.|++++..|..|.||||+|+..|+.+++++|+++ |++++
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~ 152 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN------GANKD 152 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT------TCCTT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCC
Confidence 999855899999999999999999 88899999999999999999999999999999999999999996 99999
Q ss_pred cccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhhhhhhh
Q 022200 187 RKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSLATVEI 224 (301)
Q Consensus 187 ~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~a~~~~ 224 (301)
.+|..|+||||+|+.. +|+++ .+|..|+||+++|+...
T Consensus 153 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 202 (223)
T 2f8y_A 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM 202 (223)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhc
Confidence 9999999999999998 67766 77899999999997653
No 33
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.8e-34 Score=255.76 Aligned_cols=199 Identities=14% Similarity=0.049 Sum_probs=179.9
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh----CCchhhh------
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL----KPSFARK------ 82 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~------ 82 (301)
.+..+.||||+|+..|+.++|+.|++.|++... ..|.||||+|+..|+.+++++|++. +..+ +.
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~ 122 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-----WHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECD 122 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-----BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-----cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcc
Confidence 456789999999999999999999999995432 1499999999999999999999998 6655 44
Q ss_pred -----------cCCCCCcHHHHHHHCC--CHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc---
Q 022200 83 -----------QNQYGCSPLHLALQNS--HTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS--- 145 (301)
Q Consensus 83 -----------~~~~g~tpLh~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~--- 145 (301)
+|..|.||||+|+..| +.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++
T Consensus 123 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 201 (364)
T 3ljn_A 123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201 (364)
T ss_dssp CCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSS
T ss_pred hHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 7889999999999999 99999999999999 999999999999999999 88999999999988
Q ss_pred --hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh---------
Q 022200 146 --ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST--------- 207 (301)
Q Consensus 146 --~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~--------- 207 (301)
++..|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|+++
T Consensus 202 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 275 (364)
T 3ljn_A 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275 (364)
T ss_dssp CCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTC
T ss_pred ccccccCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcC
Confidence 999999999999999999999999999996 999999999999999999998 66665
Q ss_pred --------hhhCCCCchhhhhhhhh
Q 022200 208 --------VRNFGGREGSSLATVEI 224 (301)
Q Consensus 208 --------~~n~~g~tpl~~a~~~~ 224 (301)
..+..|.||++.|+...
T Consensus 276 ~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 276 PYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp TTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred cccCcccccccccccccchhhhhcc
Confidence 26778899998886543
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=251.89 Aligned_cols=178 Identities=19% Similarity=0.173 Sum_probs=144.7
Q ss_pred ccCCCHHHHHHHHhCCHH-HHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 14 KSRTDQRLNEAAQAGNVD-ALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
+..+.+||+.|+..++.+ +++.|++.|.+++.... +|+||||+|+..|+.+++++|++.++++ +.++..|.||+|
T Consensus 49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~---~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~ 124 (269)
T 4b93_B 49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ---DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLH 124 (269)
T ss_dssp --------------------------CCCCTTCCCT---TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred CccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC---CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccc
Confidence 345778999999988765 78999999998865543 5999999999999999999999999877 778999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++..+..|+||||+|+..|+.+++++
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred cccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999999 999999999999999999 8889999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 172 MLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 172 Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|+++ |++++.+|.+|+||||+|+++
T Consensus 204 Ll~~------Gad~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 204 LLLH------GASVQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp HHHT------TCCSCCCCTTSCCSGGGSCTT
T ss_pred HHHC------CCCCCCcCCCCCCHHHHHHhC
Confidence 9996 999999999999999999876
No 35
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-34 Score=245.76 Aligned_cols=179 Identities=20% Similarity=0.150 Sum_probs=152.7
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc---------------
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS--------------- 78 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--------------- 78 (301)
+..+.||||+|+..|+.++++.|++.|+++..... .|+||||+|+..|+.+++++|++.++.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 118 (282)
T 1oy3_D 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER---GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118 (282)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT---TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccc
Confidence 46789999999999999999999999998765443 599999999999999999999997754
Q ss_pred -------------------------------hhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCC-CCCchhH
Q 022200 79 -------------------------------FARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLH 126 (301)
Q Consensus 79 -------------------------------~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh 126 (301)
.++.++..|.||||+|+..|+.+++++|++.|++ ++.++. .|+||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~ 197 (282)
T 1oy3_D 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLH 197 (282)
T ss_dssp -------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHH
T ss_pred cCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHH
Confidence 1356788999999999999999999999999999 888875 4999999
Q ss_pred HHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 127 YVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 127 ~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+|+.. ...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.|||++|...
T Consensus 198 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH------GAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHT------TCCCCCCC-------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHc------CCCcCcCCCcccccccccCCc
Confidence 99999 88999999999999999999999999999999999999999997 999999999999999999654
No 36
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2e-33 Score=246.62 Aligned_cols=203 Identities=17% Similarity=0.116 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhh------------------------------cCCCCCChHHHHHHHcCC
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQI------------------------------DQVPFVDTHLHIAASMGH 65 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~------------------------------~~~~~g~t~Lh~A~~~g~ 65 (301)
.|.||||+|++.|+.++|+.||+.|+++.... ..+..|.||||+|+..|+
T Consensus 58 ~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~ 137 (337)
T 4g8k_A 58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137 (337)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence 47899999999999999999999987653211 122358999999999999
Q ss_pred HHHHHHHHHhCCchh---------hhcCCCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHhc----
Q 022200 66 VNFALEIMRLKPSFA---------RKQNQYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAEN---- 131 (301)
Q Consensus 66 ~~~v~~Ll~~~~~~~---------~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~---- 131 (301)
.+++++|++.++++. ...+..|.||||+|+..|+.+++++||+. |++ ++.+|..|.||||.++..
T Consensus 138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~ 216 (337)
T 4g8k_A 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDS 216 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTT
T ss_pred HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcc
Confidence 999999999987652 23456799999999999999999999975 788 999999999999988765
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------H
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------K 203 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~ 203 (301)
...++++|++.|++++.+|..|+||||+|+..|+.+++++|++. .+++++.+|.+|+||||+|++. +
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~-----~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~ 291 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-----EHIEINDTDSDGKTALLLAVELKLKKIAEL 291 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh-----cCCcccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 56789999999999999999999999999999999999999974 4899999999999999999998 7
Q ss_pred HHhhhhhCCCCchhhhhhhhh
Q 022200 204 LESTVRNFGGREGSSLATVEI 224 (301)
Q Consensus 204 Ll~~~~n~~g~tpl~~a~~~~ 224 (301)
|+++--|.++++||++|+...
T Consensus 292 Ll~~GAd~n~~~~L~~A~~~~ 312 (337)
T 4g8k_A 292 LCKRGASTDCGDLVMTARRNY 312 (337)
T ss_dssp HHTTSCSSTTCCHHHHHHHTT
T ss_pred HHHCCCCCCCCCHHHHHHHcC
Confidence 777755778889999997653
No 37
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.5e-34 Score=237.88 Aligned_cols=180 Identities=16% Similarity=0.124 Sum_probs=166.6
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc---hhhhcCCCCCc
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS---FARKQNQYGCS 89 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t 89 (301)
.+..+.||||+|+..|+.++++.|++.|.++..... .|.||||+|+..|+.+++++|++.++. ..+.++..|.|
T Consensus 42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t 118 (241)
T 1k1a_A 42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCc
Confidence 346688999999999999999999999988765533 599999999999999999999999872 34778899999
Q ss_pred HHHHHHHCCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHH
Q 022200 90 PLHLALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLK 167 (301)
Q Consensus 90 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~ 167 (301)
|||+|+..|+.+++++|++.|++ ++..+ ..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus 119 ~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 197 (241)
T 1k1a_A 119 ALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP 197 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999999999 78888 8899999999999 889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 168 VLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 168 ~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
++++|+++ |++++.+|..|+||||+|+..
T Consensus 198 ~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~ 226 (241)
T 1k1a_A 198 LVRTLVRS------GADSSLKNCHNDTPLMVARSR 226 (241)
T ss_dssp HHHHHHHT------TCCTTCCCTTSCCTTTTCSSH
T ss_pred HHHHHHhc------CCCCCCcCCCCCCHHHHHHhc
Confidence 99999996 999999999999999999877
No 38
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.5e-34 Score=241.78 Aligned_cols=177 Identities=19% Similarity=0.227 Sum_probs=156.9
Q ss_pred CCHHHHHHHHhCCHH----HHHHHHHcChhhhh---hhcCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhh-----
Q 022200 17 TDQRLNEAAQAGNVD----ALYELIWEDAYLID---QIDQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFAR----- 81 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~----~v~~Ll~~~~~~~~---~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~----- 81 (301)
|.||||.|++.|+.+ ++++|++.|.+++. ..+. .|+||||+|+.. |+.+++++|++.+++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~--~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS--TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT--TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC--CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 679999999999997 55666678888765 1222 599999999999 999999999999765421
Q ss_pred -----hcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCC-------------CCchhHHHHhc-HHHHHHHHHh-
Q 022200 82 -----KQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-------------GVTPLHYVAEN-VDLLYKFLTA- 141 (301)
Q Consensus 82 -----~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~-------------g~tpLh~A~~~-~~~~~~lL~~- 141 (301)
.+|..|.||||+|+..|+.+++++|++.|++ ++.+|.. |.||||+|+.. ..+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 2347899999999999999999999999999 8888876 99999999999 8899999999
Q ss_pred --CCcchhccccCCCcHHHHHHH--cCCHH-------HHHHHHHhhhhcCccccc-------ccccCCCCcHHHHHHHH
Q 022200 142 --CPKSILQVTIRKETALYVAAK--NDKLK-------VLKVMLGWLRYVNKDDII-------NRKDDEGSILLHISISR 202 (301)
Q Consensus 142 --~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------~~~~Ll~~~~~~~~~~~~-------~~~d~~g~tpLh~A~~~ 202 (301)
.|++++.+|..|+||||+|+. .++.+ ++++|+++ |+++ +.+|..|+||||+|+..
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM------GARLCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc------CCCcccccccccccCCCCCCHHHHHHHh
Confidence 999999999999999999999 88888 99999997 8888 89999999999999987
No 39
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.7e-34 Score=244.81 Aligned_cols=194 Identities=16% Similarity=0.134 Sum_probs=161.6
Q ss_pred cccccCCCHHHHHHHHhCCHHHHHHHHHcCh----hhhhhh-cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCch---
Q 022200 11 QKIKSRTDQRLNEAAQAGNVDALYELIWEDA----YLIDQI-DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSF--- 79 (301)
Q Consensus 11 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~--- 79 (301)
...+..+.|+||.|++.|+.++|+.|++.+. ++.... .....|+||||+|+.. |+.+++++|++.+++.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 4467789999999999999999999998543 322110 1123599999999987 9999999999997542
Q ss_pred ---hhh----cCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCC--------------CCCchhHHHHhc-HHHHHH
Q 022200 80 ---ARK----QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR--------------EGVTPLHYVAEN-VDLLYK 137 (301)
Q Consensus 80 ---~~~----~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~--------------~g~tpLh~A~~~-~~~~~~ 137 (301)
++. +|..|.||||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+.. ..++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 165 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence 122 567899999999999999999999999999 888887 799999999999 888999
Q ss_pred HHHh---CCcchhccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhcCcccccc-------cccCCCCcHHHH
Q 022200 138 FLTA---CPKSILQVTIRKETALYVAAKNDK---------LKVLKVMLGWLRYVNKDDIIN-------RKDDEGSILLHI 198 (301)
Q Consensus 138 lL~~---~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~~~~Ll~~~~~~~~~~~~~-------~~d~~g~tpLh~ 198 (301)
+|++ .|++++.+|..|+||||+|+..|+ .+++++|+++ |++++ .+|..|+||||+
T Consensus 166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL------GAKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh------hhhcccccccccccCCCCCCHHHH
Confidence 9999 999999999999999999999998 7999999997 88886 589999999999
Q ss_pred HHHH-------HHHhh-hhhC
Q 022200 199 SISR-------KLEST-VRNF 211 (301)
Q Consensus 199 A~~~-------~Ll~~-~~n~ 211 (301)
|+.. +|+++ .+|.
T Consensus 240 A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 240 AASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp HHHTTCHHHHHHHHHHHTC--
T ss_pred HHHhChHHHHHHHHHCCCCCc
Confidence 9988 66666 4343
No 40
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.3e-34 Score=243.26 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=162.8
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..|.||||+|+..|+.++|+.|++.|++++.. +|+||||+|+..|+.+++++|+++++++ +.+|..|.||||
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~ 100 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-----ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALY 100 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC-----TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-----CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHH
Confidence 3567899999999999999999999999987554 3899999999999999999999999886 778999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCC-CchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREG-VTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLK 170 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~ 170 (301)
+|+..|+.+++++|++.|++ ++.+|..| .||||+|+.. ..+++++|++.|+++... ..|.||||+|+..|+.++++
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHH
Confidence 99999999999999999999 99999999 7999999999 889999999999876332 28999999999999999999
Q ss_pred HHHHhhhhcCcccccccccCCCCcH-HHHHHHH
Q 022200 171 VMLGWLRYVNKDDIINRKDDEGSIL-LHISISR 202 (301)
Q Consensus 171 ~Ll~~~~~~~~~~~~~~~d~~g~tp-Lh~A~~~ 202 (301)
+|+++ |++++.+|..|+|| ||+|+..
T Consensus 179 ~Ll~~------gad~n~~~~~g~t~~L~~A~~~ 205 (285)
T 3kea_A 179 LLLDY------MTSTNTNNSLLFIPDIKLAIDN 205 (285)
T ss_dssp HHHHH------HHHTCTTCCCBCCTTHHHHHHH
T ss_pred HHHHc------CCCCCcccCCCCChHHHHHHHc
Confidence 99997 99999999999998 9999998
No 41
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=228.86 Aligned_cols=179 Identities=24% Similarity=0.267 Sum_probs=166.8
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.||||.|++.|+.++++.|++.+++.....+. .|.||||+|+..|+.+++++|++.++++ +.++..|.||||+
T Consensus 39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGD--LNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHL 115 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTT--TTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCC--cCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence 467889999999999999999999999987655443 4899999999999999999999998877 7789999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--HHHHHHHHHhCCcchhcccc-CCCcHHHHHHHcCCHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTI-RKETALYVAAKNDKLKVLK 170 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~~~ 170 (301)
|+..|+.+++++|++.|++ ++.++..|.||||+|+.. ...++++|++.|++++..+. .|.||||+|+..|+.++++
T Consensus 116 A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 9999999999999999999 999999999999999976 57899999999999999997 8999999999999999999
Q ss_pred HHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 171 VMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+|+++ |++++.+|..|+||||+|+..
T Consensus 195 ~Ll~~------g~~~~~~~~~g~t~l~~A~~~ 220 (240)
T 3eu9_A 195 LLLEA------GANVDAQNIKGESALDLAKQR 220 (240)
T ss_dssp HHHHH------TCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHc------CCCCCCcCCCCCCHHHHHHHc
Confidence 99997 999999999999999999988
No 42
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=9.8e-33 Score=218.95 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=149.9
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ 96 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 96 (301)
+.+|||.|+..|+.+.++.|++.++......+. .|+||||+|+..|+.+++++|++.++++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE--RGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT--TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence 457999999999999999999999875554443 5999999999999999999999999876 7889999999999999
Q ss_pred CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
.|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999999 999999999999999999 88899999999999999999999999999999999999999997
Q ss_pred hhhcCcccccccccCCCCcH
Q 022200 176 LRYVNKDDIINRKDDEGSIL 195 (301)
Q Consensus 176 ~~~~~~~~~~~~~d~~g~tp 195 (301)
++++..++..|.||
T Consensus 158 ------~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ------ILKLFQSNLVPADP 171 (172)
T ss_dssp ------HHHHSCC-------
T ss_pred ------HHHHhcccCCCCCC
Confidence 88888888888887
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=2.1e-33 Score=237.40 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=160.3
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHH----cChhhhhhhc-CCCCCChHHHHHH---HcCCHHHHHHHHHhCCch------
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIW----EDAYLIDQID-QVPFVDTHLHIAA---SMGHVNFALEIMRLKPSF------ 79 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~-~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~------ 79 (301)
+..+.++||.|++.|+.+.++.|++ .+.++..... ....|+||||+|+ ..|+.+++++|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 3457899999999999996665555 7777654431 1125999999999 679999999999986432
Q ss_pred ----hhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecC--------------CCCCchhHHHHhc-HHHHHHHHH
Q 022200 80 ----ARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQG--------------REGVTPLHYVAEN-VDLLYKFLT 140 (301)
Q Consensus 80 ----~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~-~~~~~~lL~ 140 (301)
.+..|..|.||||+|+..|+.+++++|++.|++ ++.++ ..|.||||+|+.. ..+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 233456899999999999999999999999999 88888 6899999999999 889999999
Q ss_pred h---CCcchhccccCCCcHHHHHHHcCC---------HHHHHHHHHhhhhcCccccc-------ccccCCCCcHHHHHHH
Q 022200 141 A---CPKSILQVTIRKETALYVAAKNDK---------LKVLKVMLGWLRYVNKDDII-------NRKDDEGSILLHISIS 201 (301)
Q Consensus 141 ~---~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~~~~Ll~~~~~~~~~~~~-------~~~d~~g~tpLh~A~~ 201 (301)
+ .|++++.+|..|+||||+|+..++ .+++++|+++ |+++ +.+|..|+||||+|+.
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~ 234 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK------CAKLFPDTNLEALLNNDGLSPLMMAAK 234 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH------HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh------CcccccccchhhcccCCCCCHHHHHHH
Confidence 9 999999999999999999999888 7999999997 8888 7799999999999998
Q ss_pred H-------HHHhh
Q 022200 202 R-------KLEST 207 (301)
Q Consensus 202 ~-------~Ll~~ 207 (301)
. +|+++
T Consensus 235 ~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 235 TGKIGIFQHIIRR 247 (260)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh
Confidence 8 66665
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.2e-32 Score=216.45 Aligned_cols=140 Identities=26% Similarity=0.334 Sum_probs=135.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HH
Q 022200 55 THLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VD 133 (301)
Q Consensus 55 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~ 133 (301)
++|+.||+.|+.++|+.|++.|+++ +.+|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+.. ..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence 4799999999999999999999887 88899999999999999999999999999999 999999999999999999 88
Q ss_pred HHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 134 LLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 134 ~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+..
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK------GADVNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999999999996 999999999999999999987
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.8e-32 Score=224.64 Aligned_cols=167 Identities=25% Similarity=0.241 Sum_probs=149.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccc----eecCCCCCchhHH
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLV----RVQGREGVTPLHY 127 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh~ 127 (301)
.|+||||+|+..|+.+++++|++..+..++.+|..|+||||+|+..|+.+++++|++.+++.. +.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 389999999999999999999998334448889999999999999999999999999998822 6678899999999
Q ss_pred HHhc-HHHHHHHHHhCCcchhcccc-------------CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCC
Q 022200 128 VAEN-VDLLYKFLTACPKSILQVTI-------------RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGS 193 (301)
Q Consensus 128 A~~~-~~~~~~lL~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~ 193 (301)
|+.. ..+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++ |++++.+|..|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~d~~g~ 155 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH------GADIRAQDSLGN 155 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT------TCCTTCCCTTSC
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCCCCCCC
Confidence 9999 88999999999999998866 799999999999999999999996 999999999999
Q ss_pred cHHHHHHHH-----------HHHhh-----------hhhCCCCchhhhhhhhh
Q 022200 194 ILLHISISR-----------KLEST-----------VRNFGGREGSSLATVEI 224 (301)
Q Consensus 194 tpLh~A~~~-----------~Ll~~-----------~~n~~g~tpl~~a~~~~ 224 (301)
||||+|+.. +|++. .+|..|+||+|+|+...
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g 208 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence 999999976 44443 35789999999997653
No 46
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-32 Score=244.27 Aligned_cols=180 Identities=15% Similarity=0.138 Sum_probs=162.4
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCC--chhhhcCCCCCcH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKP--SFARKQNQYGCSP 90 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g~tp 90 (301)
.+..+.||||+|+..|+.++|+.|++.|++++.... .|.||||+|+..|+.+++++|++.+. ..++..|..|.||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 238 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK---SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC---CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence 356799999999999999999999999998765443 59999999999999999999999862 2337789999999
Q ss_pred HHHHHHCC---CHHHHHHHhhcCCcccee--------cCCCCCchhHHHHhc-HHHHHHHHHhC-CcchhccccCCCcHH
Q 022200 91 LHLALQNS---HTQMVLRLIDVDRNLVRV--------QGREGVTPLHYVAEN-VDLLYKFLTAC-PKSILQVTIRKETAL 157 (301)
Q Consensus 91 Lh~A~~~~---~~~~v~~Ll~~~~~~~~~--------~d~~g~tpLh~A~~~-~~~~~~lL~~~-~~~~~~~d~~g~t~L 157 (301)
||+|+..+ +.+++++|++.|++ ++. .|..|.||||+|+.. ..+++++|++. |++++.+|..|+|||
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence 99999998 89999999999988 665 677999999999999 77778888765 499999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 158 YVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 158 h~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|+|+..|+.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 318 ~~A~~~g~~~iv~~Ll~~------gad~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 318 MLAAQEGRIEVVMYLIQQ------GASVEAVDATDHTARQLAQAN 356 (373)
T ss_dssp HHHHHHTCHHHHHHHHHT------TCCSSCCCSSSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc------CCCccCCCCCCCCHHHHHHHc
Confidence 999999999999999996 999999999999999999987
No 47
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.2e-32 Score=240.90 Aligned_cols=170 Identities=10% Similarity=0.084 Sum_probs=95.2
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCC---HHHHHHHHHhCCchhhhcCCCCCcH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGH---VNFALEIMRLKPSFARKQNQYGCSP 90 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tp 90 (301)
+..|.||||+|+..|+.++|+.||+.|++++.... .|+||||+|+..|+ .++++.|++.+...++.+|..|+||
T Consensus 128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~---~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp 204 (327)
T 1sw6_A 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 204 (327)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT---TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence 44566666666666666666666666665543322 36666666666665 4555555555433345566666666
Q ss_pred HHHHHH----CCCHHHHHHHhhc--------------------CCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcch
Q 022200 91 LHLALQ----NSHTQMVLRLIDV--------------------DRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSI 146 (301)
Q Consensus 91 Lh~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~ 146 (301)
||+|+. .|+.+++++|++. +++ ++.+|..|.||||+|+. +++|++. ++
T Consensus 205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~-----~~~Ll~~--~~ 276 (327)
T 1sw6_A 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD-----LKWIIAN--ML 276 (327)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS-----HHHHHHH--TT
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH-----HHHHHHh--CC
Confidence 666666 5666666666655 444 55666666666666654 3444443 45
Q ss_pred hccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHH
Q 022200 147 LQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISI 200 (301)
Q Consensus 147 ~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~ 200 (301)
+.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+|+||||+|+
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDY------GADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHT------TCCTTCCCTTSCCGGGGTC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcccCCCCCCHHHHHH
Confidence 66666666666666666666666666664 6666666666666666664
No 48
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=2e-32 Score=235.87 Aligned_cols=180 Identities=18% Similarity=0.129 Sum_probs=161.3
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++++.|++.|++++.... .|.||||+|+..|+.+++++|+++++++ +.++..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~ 144 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN---EGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLD 144 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHH
Confidence 356789999999999999999999999998765543 4999999999999999999999999876 778999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccc--------------------------eecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200 93 LALQNSHTQMVLRLIDVDRNLV--------------------------RVQGREGVTPLHYVAEN-VDLLYKFLTACPKS 145 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~--------------------------~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~ 145 (301)
+|+..++.+++++++......+ ...+..|.||||+|+.. ...++++|++.|++
T Consensus 145 ~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d 224 (299)
T 1s70_B 145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224 (299)
T ss_dssp HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred HHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence 9999999999998776432212 23567899999999999 88899999999999
Q ss_pred hhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 146 ILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 146 ~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 225 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 225 VNIKDYDGWTPLHAAAHWGKEEACRILVEN------LCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTTTSCCSG
T ss_pred CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHH
Confidence 999999999999999999999999999996 999999999999999999766
No 49
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=3e-31 Score=210.33 Aligned_cols=157 Identities=16% Similarity=0.202 Sum_probs=141.1
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
+.||||.|+..|+.++++.|++.++...+.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 468999999999999999999999987799999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KL 204 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~L 204 (301)
..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+.. +|
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR------GADLTTEADSGYTPMDLAVALGYRKVQQVI 154 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHhCcHHHHHHH
Confidence 88999999999999999999999999999999999999999996 999999999999999999998 56
Q ss_pred Hhh-----hhhCCCCch
Q 022200 205 EST-----VRNFGGREG 216 (301)
Q Consensus 205 l~~-----~~n~~g~tp 216 (301)
+++ .+|..|.||
T Consensus 155 ~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 155 ENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHSCC-------
T ss_pred HHHHHHHhcccCCCCCC
Confidence 665 556666666
No 50
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=6e-32 Score=230.92 Aligned_cols=178 Identities=18% Similarity=0.181 Sum_probs=159.9
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhh-hhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLI-DQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
..+++|.|+..|+.+.++.+++.+.+.. +..+ ..|+||||+|+..|+.+++++|++.++..++.++..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d--~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIAD--SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC--TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 4467889999999999999998876632 2222 259999999999999999999999998566889999999999999
Q ss_pred -----HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200 96 -----QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169 (301)
Q Consensus 96 -----~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~ 169 (301)
..++.+++++|++.|.. .+..|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 55889999999999988 888999999999999999 88999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
++|++. .|++++.+|..|+||||+|+..
T Consensus 233 ~~Ll~~-----~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 233 GLLLAV-----PSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp HHHHTS-----TTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHhc-----CCCCCcCcCCCCCCHHHHHHHc
Confidence 999982 3999999999999999999988
No 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.8e-31 Score=208.73 Aligned_cols=155 Identities=19% Similarity=0.086 Sum_probs=142.2
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
.+.||||.|+..|+.++++.|++.+.+++.... .|.||||+|+..|+.+++++|++.++++ +.++..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE---EGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 477899999999999999999999887654433 5999999999999999999999998776 777999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999 899999999999999999 8889999999999999999999999999999999999999998
Q ss_pred h
Q 022200 175 W 175 (301)
Q Consensus 175 ~ 175 (301)
+
T Consensus 157 ~ 157 (167)
T 3v31_A 157 H 157 (167)
T ss_dssp H
T ss_pred H
Confidence 7
No 52
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=9.7e-31 Score=212.39 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=152.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
++.||||.|+..|+.+.++.|+..++..++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence 5899999999999999999999998866688899999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHH-hCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcc-cccccccCCCCcHHHHHHHH------
Q 022200 132 -VDLLYKFLT-ACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKD-DIINRKDDEGSILLHISISR------ 202 (301)
Q Consensus 132 -~~~~~~lL~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~-~~~~~~d~~g~tpLh~A~~~------ 202 (301)
..+++++|+ ..+.+++..|..|.||||+|+..|+.+++++|++. + ++++.+|..|+||||+|+..
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED------GREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH------CCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc------CCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 677777777 78889999999999999999999999999999996 6 89999999999999999942
Q ss_pred ------HHHhh-----hhhCCCCchhhhhhhh
Q 022200 203 ------KLEST-----VRNFGGREGSSLATVE 223 (301)
Q Consensus 203 ------~Ll~~-----~~n~~g~tpl~~a~~~ 223 (301)
+|++. .+|..|+||+|+|+..
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence 66666 7899999999999765
No 53
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.6e-31 Score=213.71 Aligned_cols=158 Identities=20% Similarity=0.121 Sum_probs=123.4
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||+|+..|+.++++.|++.+.++..... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI---EGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc---cCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 356677888888888888888888887776544332 4788888888888888888888887665 667778888888
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 88888888888888888877 777888888888888877 6777777778888888888888888888888888888888
Q ss_pred HHHh
Q 022200 172 MLGW 175 (301)
Q Consensus 172 Ll~~ 175 (301)
|+++
T Consensus 186 Ll~~ 189 (192)
T 2rfm_A 186 FTEV 189 (192)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8775
No 54
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=3.2e-31 Score=227.42 Aligned_cols=184 Identities=15% Similarity=0.021 Sum_probs=158.3
Q ss_pred HHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHH
Q 022200 25 AQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVL 104 (301)
Q Consensus 25 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~ 104 (301)
++..+.+.+..+|..+ +++.. + ..|+||||+|+..|+.+++++|++.++++ +.+ +|.||||+|+..|+.++++
T Consensus 7 i~~~~~~~v~~lL~~~-~~~~~-d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK-DTFKA-D--VHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHST-TTTCC-C--TTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhC-CCCcc-C--CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHH
Confidence 4456666677776654 33222 2 25999999999999999999999998776 444 5999999999999999999
Q ss_pred HHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC-CcHHHHHHHcCCHHHHHHHHHhhhhcCcc
Q 022200 105 RLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK-ETALYVAAKNDKLKVLKVMLGWLRYVNKD 182 (301)
Q Consensus 105 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~ 182 (301)
+|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++..+..| .||||+|+..|+.+++++|+++ +
T Consensus 80 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~------g 152 (285)
T 3kea_A 80 ILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE------I 152 (285)
T ss_dssp HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT------S
T ss_pred HHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC------C
Confidence 99999999 999999999999999999 8899999999999999999999 8999999999999999999986 6
Q ss_pred cccccccC-CCCcHHHHHHHH-------HHHhh-----hhhCCCCch-hhhhhhhh
Q 022200 183 DIINRKDD-EGSILLHISISR-------KLEST-----VRNFGGREG-SSLATVEI 224 (301)
Q Consensus 183 ~~~~~~d~-~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tp-l~~a~~~~ 224 (301)
++. .|. .|+||||+|+.. +|+++ .+|..|+|| ||+|+...
T Consensus 153 ~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 153 PST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp CTT--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred Ccc--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence 555 333 899999999988 67766 788999998 99997643
No 55
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1e-30 Score=206.94 Aligned_cols=157 Identities=24% Similarity=0.228 Sum_probs=143.1
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
...+.++|+.|++.|+.++|+.|++.|.+++.... .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA---SGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 34566799999999999999999999988755433 4999999999999999999999998876 7789999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999 899999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHh
Q 022200 173 LGW 175 (301)
Q Consensus 173 l~~ 175 (301)
+++
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 874
No 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=6.4e-32 Score=236.25 Aligned_cols=186 Identities=14% Similarity=0.105 Sum_probs=148.3
Q ss_pred HHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCC
Q 022200 20 RLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSH 99 (301)
Q Consensus 20 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~ 99 (301)
.+|.|+..+..++++.|++.|.+++...+. .|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDE--HGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCCST--TCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence 357788888888899999999988763333 5999999999999999999999999887 7889999999999999998
Q ss_pred ---HHHHHHHhhcCCccceecCCCCCchhHHHHh----c-HHHHHHHHHhC--------------------Ccchhcccc
Q 022200 100 ---TQMVLRLIDVDRNLVRVQGREGVTPLHYVAE----N-VDLLYKFLTAC--------------------PKSILQVTI 151 (301)
Q Consensus 100 ---~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~----~-~~~~~~lL~~~--------------------~~~~~~~d~ 151 (301)
.++++.|++.+...++.+|..|+||||+|+. . ...++++|++. |++++.++.
T Consensus 177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 256 (327)
T 1sw6_A 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256 (327)
T ss_dssp HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence 7888888888743499999999999999998 5 66777777665 889999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh-----hhhCCCCchhhh
Q 022200 152 RKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST-----VRNFGGREGSSL 219 (301)
Q Consensus 152 ~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~-----~~n~~g~tpl~~ 219 (301)
.|.||||.|+. +++|+++ +++.+|..|+||||+|+.. +|+++ .+|.+|+||||+
T Consensus 257 ~g~t~L~~a~~------~~~Ll~~--------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~ 322 (327)
T 1sw6_A 257 ERKDSILENLD------LKWIIAN--------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322 (327)
T ss_dssp ---CHHHHHCS------HHHHHHH--------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred cCCChhHHHHH------HHHHHHh--------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 99999999986 8899874 5899999999999999998 77777 889999999999
Q ss_pred hhh
Q 022200 220 ATV 222 (301)
Q Consensus 220 a~~ 222 (301)
|+.
T Consensus 323 A~~ 325 (327)
T 1sw6_A 323 GAG 325 (327)
T ss_dssp TCC
T ss_pred HHh
Confidence 964
No 57
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.5e-31 Score=222.95 Aligned_cols=178 Identities=16% Similarity=0.080 Sum_probs=160.8
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCc-----hhhhcCCCC
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPS-----FARKQNQYG 87 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g 87 (301)
.+..+.||||+|+..|+.++++.|++.|.++..... .|.||||+|+..|+.+++++|++.++. ..+..+..|
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g 117 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF---RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCC
Confidence 346688999999999999999999999988765433 599999999999999999999999753 357788999
Q ss_pred CcHHHHHHHCCCHHHHHHHhhcCCccceecCC-CCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200 88 CSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR-EGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK 165 (301)
Q Consensus 88 ~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~ 165 (301)
.||||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+.. ...++++|++.|++++.+|..|.||||+|+..|+
T Consensus 118 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 118 HTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence 9999999999999999999999999 889887 999999999999 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcccccc--cccCCCCcHHHHHH
Q 022200 166 LKVLKVMLGWLRYVNKDDIIN--RKDDEGSILLHISI 200 (301)
Q Consensus 166 ~~~~~~Ll~~~~~~~~~~~~~--~~d~~g~tpLh~A~ 200 (301)
.+++++|+++ |++.. .++..|.||.+.+.
T Consensus 197 ~~~~~~Ll~~------ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 197 TRIQQQLGQL------TLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp HHHHHHHHTT------SCGGGSSCCCCCTTTCCCCC-
T ss_pred hHHHHHHHHc------chhhhhcCCccchHHHHhhhc
Confidence 9999999997 77766 78899999876543
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=4.1e-31 Score=207.34 Aligned_cols=155 Identities=20% Similarity=0.254 Sum_probs=142.0
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA 94 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 94 (301)
....++||.|++.|+.++++.|++.|.+++.... .|+||||+|+. |+.+++++|++.+.++ +.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG---FGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT---TSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc---cCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 3467899999999999999999999988755433 59999999999 9999999999998876 78899999999999
Q ss_pred HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc-hhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS-ILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~-~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++ ++..|..|.||||+|+..|+.+++++|
T Consensus 78 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 999999999999999999 999999999999999999 88899999999987 699999999999999999999999999
Q ss_pred HHh
Q 022200 173 LGW 175 (301)
Q Consensus 173 l~~ 175 (301)
+++
T Consensus 157 l~~ 159 (162)
T 1ihb_A 157 QAN 159 (162)
T ss_dssp HHT
T ss_pred HHh
Confidence 996
No 59
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.8e-33 Score=232.66 Aligned_cols=185 Identities=15% Similarity=0.055 Sum_probs=138.3
Q ss_pred HHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCc
Q 022200 33 LYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRN 112 (301)
Q Consensus 33 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~ 112 (301)
++.||+++.+..........|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 35677777766544444345778888888888888888888887765 67788888888888888888888888888888
Q ss_pred cceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHH--HHcCCHHHHHHHHHhhhhcCcccccccc
Q 022200 113 LVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVA--AKNDKLKVLKVMLGWLRYVNKDDIINRK 188 (301)
Q Consensus 113 ~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~ 188 (301)
++.+|..|+||||+|+.. ..+++++|++.|++++..+ ..|+||||+| +..|+.+++++|++. |++++.+
T Consensus 80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~------ga~~~~~ 152 (229)
T 2vge_A 80 -VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV------EQSMGLM 152 (229)
T ss_dssp -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH------HHHTTTS
T ss_pred -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc------CCCcccc
Confidence 888888888888888888 7788888888888888876 5888888888 888888888888886 8888888
Q ss_pred cCCCCcHHHHHHHH----HHHhh-------hhhCCCCchhhhhhhhhh
Q 022200 189 DDEGSILLHISISR----KLEST-------VRNFGGREGSSLATVEIA 225 (301)
Q Consensus 189 d~~g~tpLh~A~~~----~Ll~~-------~~n~~g~tpl~~a~~~~~ 225 (301)
|..|.||+|.++.. .|++. .+|.+|+||||+|+....
T Consensus 153 ~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 153 NSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp GGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred cCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCC
Confidence 88888888855444 44444 567788999998866543
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=1.4e-30 Score=202.68 Aligned_cols=150 Identities=22% Similarity=0.280 Sum_probs=135.0
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ 96 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 96 (301)
..++|+.|++.|+.++++.|++.|++... ...|.||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFTT----DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCCC----CTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCCc----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 35789999999999999999999886531 225899999999999999999999988776 7788999999999999
Q ss_pred CCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 97 NSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 97 ~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
.|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999998 899999999999999998 88899999999999999999999999999999999999886
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.8e-30 Score=208.52 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=137.4
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 111 (192)
T 2rfm_A 34 YNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIF 111 (192)
T ss_dssp TCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Confidence 5999999999999999999999998776 77899999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 112 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~ 177 (192)
T 2rfm_A 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL------GADISARDLTGLTAEASARIF 177 (192)
T ss_dssp TCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT------TCCTTCBCTTSCBHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCCCCcCCCCCCHHHHHHHh
Confidence 88899999999999999999999999999999999999999996 999999999999999999887
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1e-30 Score=208.76 Aligned_cols=167 Identities=18% Similarity=0.135 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
+..++|+.|++.|+.+.|+.|++.++......+. .|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD--HGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC--CCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 4567899999999999999999986543333333 5899999999999999999999998776 777899999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|.||||+|+..++.+++++|++
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 899999999999999998 8888999999999999999999999999999999999999998
Q ss_pred hhhhcCcccccccccCCC
Q 022200 175 WLRYVNKDDIINRKDDEG 192 (301)
Q Consensus 175 ~~~~~~~~~~~~~~d~~g 192 (301)
+ |++++..+..+
T Consensus 160 ~------g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 M------GQNLNRIPYKD 171 (179)
T ss_dssp T------TCCCSCBCCCC
T ss_pred h------hcCcccCCccc
Confidence 6 88888766544
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=4.4e-30 Score=202.60 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=137.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.|.||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 4899999999999999999999998765 88899999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
...++++|++.|++++..|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~ 145 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES------GADPTIETDSGYNSMDLAVAL 145 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHc
Confidence 88899999999999999999999999999999999999999996 999999999999999999988
No 64
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=8.9e-31 Score=220.86 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=144.8
Q ss_pred cccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhhhh--------cCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhh
Q 022200 13 IKSRTDQRLNEAAQA---GNVDALYELIWEDAYLIDQI--------DQVPFVDTHLHIAASMGHVNFALEIMRLKPSFAR 81 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 81 (301)
.+..+.||||+|+.. |+.++++.|++.|++..... +....|.||||+|+..|+.+++++|++.++++ +
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~ 117 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-H 117 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-T
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-C
Confidence 356789999999999 99999999999998865322 11235999999999999999999999999876 6
Q ss_pred hcCCC-------------CCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHh--c-HHH-------H
Q 022200 82 KQNQY-------------GCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAE--N-VDL-------L 135 (301)
Q Consensus 82 ~~~~~-------------g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~--~-~~~-------~ 135 (301)
.++.. |.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+. . ..+ +
T Consensus 118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i 196 (256)
T 2etb_A 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHM 196 (256)
T ss_dssp CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence 66765 9999999999999999999999 8999 99999999999999998 4 555 9
Q ss_pred HHHHHhCCcch-------hccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 136 YKFLTACPKSI-------LQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 136 ~~lL~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
+++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++
T Consensus 197 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp HHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 99999999999 99999999999999999999999999997
No 65
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.9e-30 Score=220.91 Aligned_cols=176 Identities=19% Similarity=0.151 Sum_probs=143.6
Q ss_pred ccCCCHHHHHHHHh---CCHHHHHHHHHcChhhhh------h--hcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhh
Q 022200 14 KSRTDQRLNEAAQA---GNVDALYELIWEDAYLID------Q--IDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARK 82 (301)
Q Consensus 14 ~~~~~~~L~~A~~~---g~~~~v~~Ll~~~~~~~~------~--~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 82 (301)
+..+.||||+|+.. |+.++|+.|++.|++... . .+.+..|+||||+|+..|+.+++++|++.++++ +.
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~ 129 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QA 129 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Cc
Confidence 56799999999987 999999999999876321 1 112235999999999999999999999998877 66
Q ss_pred cCC--------------CCCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHhc-H---------HHH
Q 022200 83 QNQ--------------YGCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAEN-V---------DLL 135 (301)
Q Consensus 83 ~~~--------------~g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~-~---------~~~ 135 (301)
++. .|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+.. . .++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 665 79999999999999999999999 8999 999999999999999985 3 688
Q ss_pred HHHHHhCCcchh-------ccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCccc-ccccccCCCCcHHH
Q 022200 136 YKFLTACPKSIL-------QVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDD-IINRKDDEGSILLH 197 (301)
Q Consensus 136 ~~lL~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~-~~~~~d~~g~tpLh 197 (301)
+++|++.|++++ .+|..|+||||+|+..|+.+++++|+++ |+ ++......+.+|-|
T Consensus 209 v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~------ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR------EIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH------HTC--------------
T ss_pred HHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC------CCCCchhhhhhhhhccC
Confidence 999999999996 4899999999999999999999999997 77 78888777777654
No 66
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=1.7e-30 Score=204.56 Aligned_cols=157 Identities=23% Similarity=0.236 Sum_probs=137.7
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
++++.++|+.|++.|+.+.++.|++.++......+ ..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE--GRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc--cCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence 35577899999999999999999986553322222 25889999999999999999999998876 7789999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|.||||+|+. |+.+++++|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 9999999999999999999 899999999999999999 8889999999999999999999999999766 899999999
Q ss_pred HHh
Q 022200 173 LGW 175 (301)
Q Consensus 173 l~~ 175 (301)
++.
T Consensus 160 ~~~ 162 (165)
T 3twr_A 160 RGD 162 (165)
T ss_dssp HTC
T ss_pred hhc
Confidence 874
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=2.9e-31 Score=221.87 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=133.8
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA 94 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 94 (301)
..|.||||.|++.|+.+.++.|+++|.++... +.|.||||.|+..|+.+++++|++.++++ +.+|..|.||||+|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~----~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA 77 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC----chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 45889999999999999999999999988643 25899999999999999999999999865 88899999999999
Q ss_pred HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCC-cHHHHH--HHcCCHHHHH
Q 022200 95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKE-TALYVA--AKNDKLKVLK 170 (301)
Q Consensus 95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~~~~ 170 (301)
+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ...++++|++.|++++..+..|. ||||+| +..|+.++++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence 999999999999999999 999999999999999999 88999999999999999998877 999999 7889999999
Q ss_pred HHHHhhhhcCcccccccccCCCCcHHHHHHHHHHHhhhhhCCCCchhhhhhh
Q 022200 171 VMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATV 222 (301)
Q Consensus 171 ~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~~Ll~~~~n~~g~tpl~~a~~ 222 (301)
+|+++ +++++..+..+.++++ +..+++|.+++..
T Consensus 157 ~Ll~~------~a~~~~~~~~~~~al~------------d~~~~~~~eLa~~ 190 (239)
T 1ycs_B 157 FLYGV------QEKMGIMNKGVIYALW------------DYEPQNDDELPMK 190 (239)
T ss_dssp HHHHH------HHHTTTTGGGEEEESS------------CBCCSSTTBCCBC
T ss_pred HHHHh------hhcccccccceEEEEe------------ccCCCCCCccccc
Confidence 99997 8888777665555543 5666666666633
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=9.2e-30 Score=198.43 Aligned_cols=152 Identities=23% Similarity=0.341 Sum_probs=137.8
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
+.++|+.|++.|+.+.++.|++... +++.. + ..|.||||+ +..|+.+++++|++.++++ +.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~--~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-N--RFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-C--TTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-C--CCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence 4689999999999999999999821 33332 2 259999999 9999999999999998876 788999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++. ++++.+|..|.||||+|+..|+.+++++|++
T Consensus 77 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999999999 999999999999999999 88889999988 9999999999999999999999999999997
Q ss_pred h
Q 022200 175 W 175 (301)
Q Consensus 175 ~ 175 (301)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.8e-29 Score=199.75 Aligned_cols=143 Identities=24% Similarity=0.266 Sum_probs=137.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.+.++||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 90 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALF 90 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence 4789999999999999999999998876 78899999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
...++++|++.|++++..|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~g~t~l~~A~~~ 156 (169)
T 2y1l_E 91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN------GADVNAQDKFGKTAFDISIDN 156 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHh
Confidence 88999999999999999999999999999999999999999996 999999999999999999887
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.7e-32 Score=223.67 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=154.3
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
+..+.++||.|+..|+.++|+.|++.|++++.... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~ 93 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE---EGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC 93 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence 34566799999999999999999999998765433 5999999999999999999999998876 8889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecC-CCCCchhHHH--Hhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYV--AEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~ 169 (301)
|+..|+.+++++|++.|++ ++.++ ..|+||||+| +.. ..+++++|++.|++++..|..|.||++.++.....
T Consensus 94 A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--- 169 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD--- 169 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---
T ss_pred HHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---
Confidence 9999999999999999999 78876 6999999999 777 89999999999999999999999999966555433
Q ss_pred HHHHHhhhhcCcccc--cccccCCCCcHHHHHHHH
Q 022200 170 KVMLGWLRYVNKDDI--INRKDDEGSILLHISISR 202 (301)
Q Consensus 170 ~~Ll~~~~~~~~~~~--~~~~d~~g~tpLh~A~~~ 202 (301)
++|++. |++ ++.+|.+|+||||+|+..
T Consensus 170 ~~ll~~------ga~~~~~~~d~~G~TpL~~A~~~ 198 (229)
T 2vge_A 170 ELSFRE------GESVTVLRRDGPEETDWWWAALH 198 (229)
T ss_dssp BCCBCT------TCEEEEEESSCTTCSSEEEEEET
T ss_pred ccCccc------cccccccccCCCcccHHHHHHHc
Confidence 455654 777 778999999999999776
No 71
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=2.8e-29 Score=195.29 Aligned_cols=141 Identities=22% Similarity=0.251 Sum_probs=134.0
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
..|+||.|+..|+.+++++|++.+++. + .+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 468999999999999999999998865 3 588999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY------GADVHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCccccCCCCCCHHHHHHHc
Confidence 88899999999999999999999999999999999999999996 999999999999999999876
No 72
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=8.1e-30 Score=215.38 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=141.3
Q ss_pred cCCCHHHHHHH---HhCCHHHHHHHHHcChhhhhh--------hcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhc
Q 022200 15 SRTDQRLNEAA---QAGNVDALYELIWEDAYLIDQ--------IDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQ 83 (301)
Q Consensus 15 ~~~~~~L~~A~---~~g~~~~v~~Ll~~~~~~~~~--------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 83 (301)
..+.||||+|+ +.|+.++++.|++.|.+.... ...+..|+||||+|+..|+.+++++|++.++++ +.+
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~ 122 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQ 122 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Ccc
Confidence 66999999999 779999999999998764221 111125999999999999999999999999877 666
Q ss_pred C--------------CCCCcHHHHHHHCCCHHHHHHHhh---cCCccceecCCCCCchhHHHHhc-H---------HHHH
Q 022200 84 N--------------QYGCSPLHLALQNSHTQMVLRLID---VDRNLVRVQGREGVTPLHYVAEN-V---------DLLY 136 (301)
Q Consensus 84 ~--------------~~g~tpLh~A~~~~~~~~v~~Ll~---~~~~~~~~~d~~g~tpLh~A~~~-~---------~~~~ 136 (301)
+ ..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+.. . .+++
T Consensus 123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v 201 (260)
T 3jxi_A 123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201 (260)
T ss_dssp CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence 6 689999999999999999999999 8999 999999999999999964 2 5899
Q ss_pred HHHHhCCcch-------hccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 137 KFLTACPKSI-------LQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 137 ~lL~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++
T Consensus 202 ~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 247 (260)
T 3jxi_A 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247 (260)
T ss_dssp HHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999 77999999999999999999999999996
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.1e-29 Score=201.14 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=135.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
++.++||.|+..|+.+++++|++.++..++.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 4789999999999999999999997777789999999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
..+++++|++.|++++..|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~tpl~~A~~~ 148 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN------GALVSICNKYGEMPVDKAKAP 148 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT------TCCSSBCCTTSCCGGGGSCHH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC------CCCcchhccCCCCcHHHHHHH
Confidence 88999999999999999999999999999999999999999996 999999999999999999877
No 74
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=214.97 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=145.0
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcCh-hhhhhhcCCCCCChHHHHHH-----HcCCHHHHHHHHHhCCchhhhcCCC
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDA-YLIDQIDQVPFVDTHLHIAA-----SMGHVNFALEIMRLKPSFARKQNQY 86 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~ 86 (301)
.+..|.||||+|+..|+.++|+.|++.|+ +++.. +. .|+||||+|+ ..++.++++.|++.+... +..+..
T Consensus 107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~--~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~ 182 (276)
T 4hbd_A 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NR--AGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQA 182 (276)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CT--TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTT
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CC--CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCC
Confidence 35779999999999999999999999998 54433 32 5999999999 668899999999998655 677889
Q ss_pred CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHh-CCcchhccccCCCcHHHHHHHcC
Q 022200 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTA-CPKSILQVTIRKETALYVAAKND 164 (301)
Q Consensus 87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~-~~~~~~~~d~~g~t~Lh~A~~~g 164 (301)
|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ...++++|++ .|++++.+|..|+||||+|+..|
T Consensus 183 g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g 261 (276)
T 4hbd_A 183 GQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG 261 (276)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999 999999999999999999 8888999998 89999999999999999999999
Q ss_pred CHHHHHHHHHh
Q 022200 165 KLKVLKVMLGW 175 (301)
Q Consensus 165 ~~~~~~~Ll~~ 175 (301)
+.+++++|+++
T Consensus 262 ~~~iv~~Ll~~ 272 (276)
T 4hbd_A 262 QSEIASMLYSR 272 (276)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999985
No 75
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=2.6e-29 Score=196.98 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=134.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
..||||.|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 679999999999999999999998776 7889999999999999 999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccc-cccccCCCCcHHHHHHHH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDI-INRKDDEGSILLHISISR 202 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~d~~g~tpLh~A~~~ 202 (301)
...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ +++ ++.+|..|.||||+|+..
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------g~~~~~~~~~~g~t~l~~A~~~ 147 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH------TASNVGHRNHKGDTACDLARLY 147 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------SCCCTTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------cCCCCCCcCCCCCcHHHHHHHc
Confidence 88899999999999999999999999999999999999999997 776 689999999999999987
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.1e-29 Score=199.94 Aligned_cols=144 Identities=21% Similarity=0.250 Sum_probs=135.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
+|.||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHc
Confidence 4889999999999999999999987766677888999999999999999999999999999 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..
T Consensus 86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~a~~~ 151 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH------GADPTKKNRDGNTPLDLVKDG 151 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCTTSCCTGGGSCTT
T ss_pred CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCCcccCCCCCChhHhHhcC
Confidence 88899999999999999999999999999999999999999996 999999999999999887554
No 77
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=2.7e-29 Score=201.87 Aligned_cols=153 Identities=13% Similarity=0.113 Sum_probs=138.0
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCH----HHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHV----NFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
+.++|+.|++.|+.+.++.++..+.+.... . .|+||||+|+..|+. +++++|++.|+++ +.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~--~--~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKES--V--LKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHHH--H--HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccccc--c--CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 457899999999999999999888654331 1 399999999999985 5899999999887 888999999999
Q ss_pred HHHHCCC------HHHHHHHhhcCCccceecCCCCC-chhHHHHhc------HHHHHHHHHh-CCcchhccccCCCcHHH
Q 022200 93 LALQNSH------TQMVLRLIDVDRNLVRVQGREGV-TPLHYVAEN------VDLLYKFLTA-CPKSILQVTIRKETALY 158 (301)
Q Consensus 93 ~A~~~~~------~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~~------~~~~~~lL~~-~~~~~~~~d~~g~t~Lh 158 (301)
+|+..++ .+++++|++.|++ ++.+|..|+ ||||+|+.. ...++++|++ .|++++.+|..|+||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence 9999887 6889999999999 999999999 999999983 4578899999 99999999999999999
Q ss_pred HHHHcCCHHHHHHHHHh
Q 022200 159 VAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 159 ~A~~~g~~~~~~~Ll~~ 175 (301)
+|++.|+.+++++|+++
T Consensus 160 ~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 160 FVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHTTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999999987
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=6.5e-29 Score=193.61 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=132.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
+.||||.|+..|+.+++++|++..+...+.+|..|.||||+ +..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC
Confidence 57999999999999999999999544558889999999999 999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
..+++++|++.|++++.+|..|+||||+|+..|+.+++++|++ .++++.+|..|.||||+|+..
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------~~~~~~~~~~g~t~l~~A~~~ 143 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-------ESDLHRRDARGLTPLELALQR 143 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-------TSCTTCCCTTSCCHHHHHHHS
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHh-------ccCCCCcCCCCCCHHHHHHHc
Confidence 8889999999999999999999999999999999999999998 378999999999999999987
No 79
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=3.2e-28 Score=189.95 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=112.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCc-hhHHHHh
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT-PLHYVAE 130 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~A~~ 130 (301)
.|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+ .|+.+++++|++.|++ ++.+|..|+| |||+|+.
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVHDAAR 87 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHH
Confidence 4899999999999999999999988766 778899999999985 8999999999999998 8999999999 9999999
Q ss_pred c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHH
Q 022200 131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHIS 199 (301)
Q Consensus 131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A 199 (301)
. ..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.||.+.+
T Consensus 88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA------AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC------C-----------------
T ss_pred CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc------CCCCCccCcCcCcccccC
Confidence 8 88888999999999999999999999999999999999999986 999999999999988754
No 80
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.8e-28 Score=217.49 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=125.0
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--hhhcCCCCCcHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--ARKQNQYGCSPLHL 93 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~ 93 (301)
.+.||||.|++.|+.++|+.|++.|.........+..|.||||+|+..|+.++|++|++++++. .+..+.+ .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 4569999999999999999999998722111111113789999999999999999999999742 1222223 999999
Q ss_pred HHHCCCHHHHHHHhhcCCcccee--cCCCCCchhHHHH-hc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHH
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRV--QGREGVTPLHYVA-EN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVL 169 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~ 169 (301)
|+..|+.+++++|++.|++ ++. .|..|.||||+|+ .. ..+++++|++.|++ |.||||+|+..|+.+++
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv 241 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVN 241 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHH
T ss_pred HHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHH
Confidence 9999999999999999998 776 8889999999999 88 88999999987743 88999999999999999
Q ss_pred HHHHHh
Q 022200 170 KVMLGW 175 (301)
Q Consensus 170 ~~Ll~~ 175 (301)
++|++.
T Consensus 242 ~lL~~~ 247 (376)
T 2aja_A 242 PFIARH 247 (376)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999987
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.9e-27 Score=179.53 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=114.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCC-CCchhHHHHh
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE-GVTPLHYVAE 130 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~ 130 (301)
.|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+. |+.+++++|++.|++ ++.+|.. |.||||+|+.
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~ 87 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTRPVHDAAR 87 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHH
Confidence 5999999999999999999999998776 7889999999999999 999999999999999 8999999 9999999999
Q ss_pred c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
. ..+++++|++.|++++.+|..|+||||+|+..++.+++++|+++
T Consensus 88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9 88899999999999999999999999999999999999999986
No 82
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2e-27 Score=198.52 Aligned_cols=157 Identities=15% Similarity=0.046 Sum_probs=111.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.|.||||.|+..|+.+.++.|+++|.++ +. +..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 3899999999999999999999999876 43 47889999999999999999999999998 999999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCC-cHHHHH--HHH-----
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGS-ILLHIS--ISR----- 202 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~-tpLh~A--~~~----- 202 (301)
...++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|. ||||+| +..
T Consensus 81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~------ga~~~~~~~~~~~t~l~~a~~~~~g~~~~ 154 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES------GAAVFAMTYSDMQTAADKCEEMEEGYTQC 154 (239)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT------TCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc------CCCcceecCCCCcchHHHHHHhhhccHHH
Confidence 88899999999999999999999999999999999999999996 999999998887 999999 333
Q ss_pred --HHHhh-----hhhCCCCchh
Q 022200 203 --KLEST-----VRNFGGREGS 217 (301)
Q Consensus 203 --~Ll~~-----~~n~~g~tpl 217 (301)
+|++. ..+..+.+++
T Consensus 155 ~~~Ll~~~a~~~~~~~~~~~al 176 (239)
T 1ycs_B 155 SQFLYGVQEKMGIMNKGVIYAL 176 (239)
T ss_dssp HHHHHHHHHHTTTTGGGEEEES
T ss_pred HHHHHHhhhcccccccceEEEE
Confidence 66666 3444444444
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=2.2e-27 Score=190.67 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=126.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCH----HHHHHHhhcCCccceecCCCCCchhHHH
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHT----QMVLRLIDVDRNLVRVQGREGVTPLHYV 128 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 128 (301)
++++|+.|++.|+.+.++.++..+.+. ..+..|+||||+|+..|+. +++++|++.|++ ++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 578999999999999999999887543 2236799999999999975 599999999999 999999999999999
Q ss_pred Hhc-H------HHHHHHHHhCCcchhccccCCC-cHHHHHHHcCC-----HHHHHHHHH-hhhhcCcccccccccCCCCc
Q 022200 129 AEN-V------DLLYKFLTACPKSILQVTIRKE-TALYVAAKNDK-----LKVLKVMLG-WLRYVNKDDIINRKDDEGSI 194 (301)
Q Consensus 129 ~~~-~------~~~~~lL~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~~~~~Ll~-~~~~~~~~~~~~~~d~~g~t 194 (301)
+.. . .+++++|++.|++++.+|..|+ ||||+|+..+. .+++++|++ + |++++.+|..|+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~------gad~~~~d~~G~T 156 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS------GLQLLIKDKWGLT 156 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST------TCCTTCCCTTSCC
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc------CCCCcccCCCCCC
Confidence 986 2 5789999999999999999999 99999999553 569999998 6 9999999999999
Q ss_pred HHHHHHHH
Q 022200 195 LLHISISR 202 (301)
Q Consensus 195 pLh~A~~~ 202 (301)
|||+|+..
T Consensus 157 pL~~A~~~ 164 (186)
T 3t8k_A 157 ALEFVKRC 164 (186)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 99999887
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=7.8e-27 Score=182.07 Aligned_cols=141 Identities=15% Similarity=0.121 Sum_probs=114.5
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCc-HHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCS-PLH 92 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pLh 92 (301)
...+.||||+|++.|+.++|+.|++.|.+++.... .|+||||+|+ .|+.+++++|++.+.++ +.+|..|.| |||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNS---YGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH 83 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS---SSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC---CCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 46688999999999999999999999988765543 5999999985 99999999999998876 888999999 999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVA 160 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A 160 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++++.++..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999 999999999999999999 88999999999999999999999998743
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=1.4e-25 Score=167.76 Aligned_cols=121 Identities=30% Similarity=0.430 Sum_probs=112.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
|+||||+|+..|+.+++++|++.+.++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcC
Confidence 889999999999999999999998776 77788999999999999999999999999998 889999999999999998
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 88889999999999999999999999999999999999999986
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=7.7e-26 Score=172.29 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=113.7
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.+.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 90 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFI 90 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHc
Confidence 4789999999999999999999998776 77899999999999999999999999999998 899999999999999999
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 88899999999999999999999999999999999999999974
No 87
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=8.1e-26 Score=172.18 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=116.7
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCC-CCcHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQY-GCSPL 91 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL 91 (301)
.+..+.||||.|++.|+.++++.|++.|.+++.... .|+||||+|+. |+.+++++|++.++++ +.+|.. |.|||
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR---FGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---TCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC---CCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 456789999999999999999999999988765543 59999999999 9999999999999886 778888 99999
Q ss_pred HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200 92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS 145 (301)
Q Consensus 92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~ 145 (301)
|+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999 999999999999999999 88899999988764
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=2.5e-25 Score=186.42 Aligned_cols=141 Identities=20% Similarity=0.224 Sum_probs=124.7
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcC-CCCCcHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQN-QYGCSPL 91 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL 91 (301)
++.++.||||.|++.|+.++++.|++ +.+++.... .|+||||+|+..|+.+++++|+++++++ +.++ ..|.|||
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L 115 (244)
T 3ui2_A 41 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTAL 115 (244)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT---TSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHH
Confidence 44578899999999999999999999 777655433 5999999999999999999999999887 5556 8899999
Q ss_pred HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
|+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. .....+.||||+|+..|+.+++++
T Consensus 116 ~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~----------------~~~~~~~~~l~~a~~~g~~~iv~~ 178 (244)
T 3ui2_A 116 HMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI----------------LKTTPKGNPMQFGRRIGLEKVINV 178 (244)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH----------------HTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHH----------------HhccCCCCHHHHHHHcChHHHHHH
Confidence 999999999999999999999 999999999999999753 122568999999999999999999
Q ss_pred HHHh
Q 022200 172 MLGW 175 (301)
Q Consensus 172 Ll~~ 175 (301)
|++.
T Consensus 179 L~~~ 182 (244)
T 3ui2_A 179 LEGQ 182 (244)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=4.3e-25 Score=176.82 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=123.9
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcC-CCCCcHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQN-QYGCSPL 91 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~tpL 91 (301)
.+.++.||||.|++.|+.++++.|++ +.+++.... .|+||||+|+..|+.+++++|++.++++ +.++ ..|+|||
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL 114 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE---NGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHH
Confidence 34578899999999999999999999 777655433 5999999999999999999999999887 5566 8999999
Q ss_pred HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhcHHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHH
Q 022200 92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAENVDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKV 171 (301)
Q Consensus 92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~ 171 (301)
|+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. .....+.++|++|+..|+.+++++
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~----------------~~~~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREI----------------LKTTPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH----------------HHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHh----------------ccCcccccHHHHHHHcCHHHHHHH
Confidence 999999999999999999999 999999999999999864 011457899999999999999999
Q ss_pred HHH
Q 022200 172 MLG 174 (301)
Q Consensus 172 Ll~ 174 (301)
|.+
T Consensus 178 L~~ 180 (183)
T 3deo_A 178 LEG 180 (183)
T ss_dssp HHT
T ss_pred HHH
Confidence 976
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=2e-24 Score=164.37 Aligned_cols=125 Identities=24% Similarity=0.277 Sum_probs=113.5
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHL 93 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~ 93 (301)
...+.|+||+|++.|+.++++.|++.|.+++.... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 86 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE---YGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL 86 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 35577899999999999999999999988765433 5999999999999999999999998876 7889999999999
Q ss_pred HHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCC
Q 022200 94 ALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACP 143 (301)
Q Consensus 94 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~ 143 (301)
|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999 999999999999999999 888899998765
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=2.4e-24 Score=161.03 Aligned_cols=125 Identities=26% Similarity=0.357 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 16 RTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 16 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
+|.||||.|++.|+.++++.|++.+.++..... .|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT---TSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC---CCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence 478999999999999999999999988755433 4999999999999999999999998876 788999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS 145 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~ 145 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999 899999999999999999 88999999998874
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=187.37 Aligned_cols=136 Identities=21% Similarity=0.152 Sum_probs=110.9
Q ss_pred ChHHHHHHHcCCHHHHHHHHHhCCchhhh-----cCCCCCcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchh
Q 022200 54 DTHLHIAASMGHVNFALEIMRLKPSFARK-----QNQYGCSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPL 125 (301)
Q Consensus 54 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpL 125 (301)
.++|+.|+..|+.+.++.|+..++++... .+..|.||||+|+.. |+.+++++|++.|++ ++.+|..|+|||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~TpL 230 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL 230 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCHH
Confidence 46789999999999998888888776322 578889999999987 888999999999888 888888999999
Q ss_pred HHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 126 HYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 126 h~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|+|+.. ..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ +++ .|.||||+|+..
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~------ga~------~g~tpLh~A~~~ 296 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA------QAG------TFAFPLHVDYSW 296 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH------HHH------TTSSCCC-----
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh------cCC------CCCChhHHHHhc
Confidence 999888 77888888888999999999999999999999999999999886 544 578888888754
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.2e-24 Score=165.69 Aligned_cols=119 Identities=23% Similarity=0.214 Sum_probs=63.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 87 (137)
T 3c5r_A 10 GETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNG 87 (137)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHHHcC
Confidence 555555555555555555555555443 44455555555555555555555555555555 555555555555555555
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVML 173 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll 173 (301)
..+++++|++.|++++.+|..|.||||+|+..+..+++++|.
T Consensus 88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 444555555555555555555555555555544444444443
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=186.31 Aligned_cols=142 Identities=15% Similarity=0.077 Sum_probs=120.0
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSP 90 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tp 90 (301)
..++|+.|+..|+++.++.|++.|++++... .....|+||||+|+.. |+.+++++|+++++++ +.+|..|.||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 3467999999999999999999999876521 0122599999999997 8999999999999876 8889999999
Q ss_pred HHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCH
Q 022200 91 LHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKL 166 (301)
Q Consensus 91 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 166 (301)
||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++ .|.||||+|+..|+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 9999999999999999999999 999999999999999999 88899999988775 589999999998864
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=2.4e-24 Score=161.01 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=50.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcC
Confidence 444555555555555555555444433 44444455555555555555555555544444 444444444444444444
Q ss_pred HHHHHHHHHhCCcchhccccCCCcHHHHH
Q 022200 132 VDLLYKFLTACPKSILQVTIRKETALYVA 160 (301)
Q Consensus 132 ~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A 160 (301)
..+++++|++.|++++.+|..|.||||+|
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 44444444444444444444444444444
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=1.5e-25 Score=187.70 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=119.1
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ 96 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 96 (301)
+.++++.++..|+.+.+..+...+.+.+. .|.||||+|+..|+.++++.|++ +.++ +.+|..|.||||+|+.
T Consensus 15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~ 86 (244)
T 3ui2_A 15 GAMEYLIEWKDGHSPSWVPSSYIAADVVS------EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG 86 (244)
T ss_dssp TEEEEEEEESSCCCCEEEEGGGSCHHHHH------HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHH
T ss_pred CccHHHHHHHcCCCccccccccccccccc------CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHH
Confidence 44455555555655555444444444332 37899999999999999999998 6554 7788889999999999
Q ss_pred CCCHHHHHHHhhcCCccceecC-CCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHH
Q 022200 97 NSHTQMVLRLIDVDRNLVRVQG-REGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLG 174 (301)
Q Consensus 97 ~~~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~ 174 (301)
.|+.+++++|++.|++ ++.++ ..|+||||+|+.. ...++++|++.|++++.+|..|.||||+|+.. .
T Consensus 87 ~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------~- 155 (244)
T 3ui2_A 87 LGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------L- 155 (244)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH---------H-
T ss_pred CCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH---------H-
Confidence 9999999999999988 77777 7789999999888 78888888888999998899999999988751 1
Q ss_pred hhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 175 WLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 175 ~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
....+.||||+|+..
T Consensus 156 -------------~~~~~~~~l~~a~~~ 170 (244)
T 3ui2_A 156 -------------KTTPKGNPMQFGRRI 170 (244)
T ss_dssp -------------TTCCCSSHHHHHHHH
T ss_pred -------------hccCCCCHHHHHHHc
Confidence 124578899998887
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=1.3e-24 Score=179.31 Aligned_cols=133 Identities=23% Similarity=0.224 Sum_probs=108.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhc-CCccceecCCCCCchhHHHHh
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDV-DRNLVRVQGREGVTPLHYVAE 130 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~ 130 (301)
.|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++. |++ ++.+|..|+||||+|+.
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHHHHHHH
Confidence 4889999999999999999999988776 77899999999999999999999999998 777 89999999999999999
Q ss_pred c-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCC
Q 022200 131 N-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEG 192 (301)
Q Consensus 131 ~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g 192 (301)
. ..+++++|++.|++++.+|..|.||||+|+..++.++++.|++. ++..+..+.+|
T Consensus 150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~------~~~~~~~~~~~ 206 (222)
T 3ehr_A 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT------DAVRTLSNAED 206 (222)
T ss_dssp HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc------chhhhccchhh
Confidence 8 88899999999999999999999999999999999999999885 77766665544
No 98
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.6e-24 Score=163.84 Aligned_cols=127 Identities=20% Similarity=0.207 Sum_probs=111.4
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
.+..+.||||.|+..|+.++++.|++.|.+++.... .|+||||+|+..|+.+++++|++.+.++ +.+|..|.||||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH---AGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC---CCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 357799999999999999999999999988755433 5999999999999999999999998876 788999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCc
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPK 144 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~ 144 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++.++.+.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 99999999999999999999 999999999999999988 7777777665443
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=8e-24 Score=158.16 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=104.5
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHH
Q 022200 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAK 162 (301)
Q Consensus 84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~ 162 (301)
+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.. ...++++|++.|++++.+|..|+||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 46788999999999999999999999998 999999999999999999 8889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 163 NDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 163 ~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
.|+.+++++|+++ |++++.+|..|+||||+|...
T Consensus 83 ~~~~~~v~~Ll~~------ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 83 EGHVSCVKLLLSK------GADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHCCCH
T ss_pred cCCHHHHHHHHHc------CCCCCCcCCCCCCHHHHhCCH
Confidence 9999999999996 999999999999999998654
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=3.5e-23 Score=165.66 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=88.0
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccc-cCCCcHHHHHH
Q 022200 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVT-IRKETALYVAA 161 (301)
Q Consensus 84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d-~~g~t~Lh~A~ 161 (301)
+..|.||||+|+..|+.+++++|++ +++ ++.+|..|+||||+|+.. ...++++|++.|++++..+ ..|+||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3456677777777777777777776 665 666677777777777766 6666667777777777666 66777777777
Q ss_pred HcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHHHHHhhhhhCCCCchhhhhhh
Q 022200 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISRKLESTVRNFGGREGSSLATV 222 (301)
Q Consensus 162 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~~Ll~~~~n~~g~tpl~~a~~ 222 (301)
..|+.+++++|+++ |++++.+|..|+||||+|+.. .....+.+|+++++.
T Consensus 119 ~~~~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~-----~~~~~~~~~l~~a~~ 168 (183)
T 3deo_A 119 GYVRPEVVEALVEL------GADIEVEDERGLTALELAREI-----LKTTPKGNPMQFGRR 168 (183)
T ss_dssp HTTCHHHHHHHHHH------TCCTTCCCTTSCCHHHHHHHH-----HHTCCCCSHHHHHHH
T ss_pred hcCcHHHHHHHHHc------CCCCcCCCCCCCCHHHHHHHh-----ccCcccccHHHHHHH
Confidence 77777777777775 777777777777777777653 223456777777754
No 101
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=1.1e-24 Score=193.16 Aligned_cols=165 Identities=14% Similarity=0.034 Sum_probs=132.9
Q ss_pred HHHHHHHH-hCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCch--hhhcCCCCCcHHHHHH
Q 022200 19 QRLNEAAQ-AGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSF--ARKQNQYGCSPLHLAL 95 (301)
Q Consensus 19 ~~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpLh~A~ 95 (301)
++++.|.. .++.+.++.+++.|.+ ++||||+|+..|+.+++++|++.++.. ....+..|.||||+|+
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 35666655 4777788888776653 569999999999999999999997622 1133556889999999
Q ss_pred HCCCHHHHHHHhhcCCcc--ceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhc--cccCCCcHHHHHH-HcCCHHHH
Q 022200 96 QNSHTQMVLRLIDVDRNL--VRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQ--VTIRKETALYVAA-KNDKLKVL 169 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~~ 169 (301)
..|+.++|++|++.|++. .+..+.+ .||||+|+.. ..+++++|++.|++++. .|..|.||||+|+ ..|+.+++
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 999999999999999741 1222222 9999999999 88999999999999888 8999999999999 99999999
Q ss_pred HHHHHhhhhcCcccccccccCCCCcHHHHHHHH-------HHHhh
Q 022200 170 KVMLGWLRYVNKDDIINRKDDEGSILLHISISR-------KLEST 207 (301)
Q Consensus 170 ~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~-------~Ll~~ 207 (301)
++|++. |+ .|.||||+|+.. +|++.
T Consensus 216 ~~Ll~~------ga-------~~~taL~~Aa~~g~~evv~lL~~~ 247 (376)
T 2aja_A 216 NFLLDC------PV-------MLAYAEIHEFEYGEKYVNPFIARH 247 (376)
T ss_dssp HHHTTS------HH-------HHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred HHHHhC------CC-------ccchHHHHHHHCCCHHHHHHHHhc
Confidence 999985 43 289999999988 66666
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=1.1e-23 Score=173.75 Aligned_cols=135 Identities=19% Similarity=0.134 Sum_probs=109.3
Q ss_pred ccCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHh-CCchhhhcCCCCCcHHH
Q 022200 14 KSRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRL-KPSFARKQNQYGCSPLH 92 (301)
Q Consensus 14 ~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpLh 92 (301)
+..+.||||+|+..|+.++|+.|++.|.+++.... .|+||||+|+..|+.+++++|++. +.++ +.+|..|.||||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~ 145 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK---AGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALH 145 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCC---CCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHH
Confidence 34678999999999999999999999988765433 599999999999999999999998 5554 888999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCC
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRK 153 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g 153 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...+++.|+..+++.+..+..+
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99999999999999999999 999999999999999998 8889999999999887766554
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=1.6e-22 Score=186.28 Aligned_cols=136 Identities=21% Similarity=0.152 Sum_probs=114.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhc------CCCCCcHHHHHHH---CCCHHHHHHHhhcCCccceecCCCCCc
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQ------NQYGCSPLHLALQ---NSHTQMVLRLIDVDRNLVRVQGREGVT 123 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------~~~g~tpLh~A~~---~~~~~~v~~Ll~~~~~~~~~~d~~g~t 123 (301)
..+.||.|+..|+.++++.|++.|+++ +.+ |..|.||||+||. .|+.+++++|++.|++ ++.+|..|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCc
Confidence 347899999999999999999999876 544 7899999999976 8999999999999999 9999999999
Q ss_pred hhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 124 PLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 124 pLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
|||+|+.. ..+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ |++++. ||+|.+...
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~------ga~~~~------~~~h~~~~~ 277 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA------QAGTFA------FPLHVDYSW 277 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT------CC-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh------CCCCCC------Ccceeeccc
Confidence 99999999 88999999999999999999999999999999999999999997 888776 677776554
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.1e-22 Score=179.75 Aligned_cols=145 Identities=13% Similarity=0.026 Sum_probs=114.8
Q ss_pred CChHHHHHHHc-CCHHHHHHHHHhCCchhhhcC--CCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHH
Q 022200 53 VDTHLHIAASM-GHVNFALEIMRLKPSFARKQN--QYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVA 129 (301)
Q Consensus 53 g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 129 (301)
+.|+||.|+.. |+.++++.|++.++++ +..+ ..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence 56899999999 9999999999999877 6666 8999999999999999999999999999 9999999999999999
Q ss_pred hc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHhhhhcCcccccccccCCCCcHHHHHHHH
Q 022200 130 EN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILLHISISR 202 (301)
Q Consensus 130 ~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpLh~A~~~ 202 (301)
.. ...++++|++.|++++.+|..|.||||+|+..|+.+++++|++.... .......+..+.|+++.+...
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~---~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR---EAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccCCCCCCHHHHHHHH
Confidence 99 88899999999999999999999999999999999999999986322 344444556677777665444
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=7.8e-22 Score=181.71 Aligned_cols=137 Identities=16% Similarity=0.111 Sum_probs=114.4
Q ss_pred CHHHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHH---cCCHHHHHHHHHhCCchhhhcCCCCCcHH
Q 022200 18 DQRLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAAS---MGHVNFALEIMRLKPSFARKQNQYGCSPL 91 (301)
Q Consensus 18 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 91 (301)
.+.||.|+..|+.+.|+.|++.|++++... +....|.||||+|+. .|+.+++++|+++|+++ +.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcHH
Confidence 367999999999999999999999876541 112369999999976 89999999999999887 88899999999
Q ss_pred HHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHH
Q 022200 92 HLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAK 162 (301)
Q Consensus 92 h~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~ 162 (301)
|+|+..|+.+++++||++|++ ++.+|..|+||||+|+.. ...++++|++.|++++. +|+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 999999999999999999999 999999999999999999 88999999999999876 46665543
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.9e-21 Score=165.84 Aligned_cols=162 Identities=17% Similarity=0.042 Sum_probs=132.8
Q ss_pred cccCCCHHHHHHHHhCCHHHHHHHHHcChh-------hh-------------hhhcC---C-----CCCChHHHHHHHcC
Q 022200 13 IKSRTDQRLNEAAQAGNVDALYELIWEDAY-------LI-------------DQIDQ---V-----PFVDTHLHIAASMG 64 (301)
Q Consensus 13 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~~~~-------~~-------------~~~~~---~-----~~g~t~Lh~A~~~g 64 (301)
.+..+.++|+.+...|+....+.+...-+. .. ..... . ....++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 455677889999999997666555322110 00 00000 0 01247899999999
Q ss_pred CHHHHHHHHHhCCch-----hhhcCCCCCcHHHHHHHC---CCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHH
Q 022200 65 HVNFALEIMRLKPSF-----ARKQNQYGCSPLHLALQN---SHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLL 135 (301)
Q Consensus 65 ~~~~v~~Ll~~~~~~-----~~~~~~~g~tpLh~A~~~---~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~ 135 (301)
+.+.++.++..+.++ ++..|..|.||||+|+.. |+.+++++|++.|++ ++.+|..|+||||+|+.. ..++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence 999999999998875 244488999999999999 899999999999999 999999999999999999 8889
Q ss_pred HHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHHHHh
Q 022200 136 YKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVMLGW 175 (301)
Q Consensus 136 ~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~Ll~~ 175 (301)
+++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999999999999999997
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=5.9e-22 Score=146.07 Aligned_cols=107 Identities=25% Similarity=0.303 Sum_probs=85.3
Q ss_pred cCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHH
Q 022200 83 QNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAA 161 (301)
Q Consensus 83 ~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~ 161 (301)
+|..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+.. ..+++++|++.|++++.+|..|+||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 577788888888888888888888888877 777888888888888877 777778888888888888888888888888
Q ss_pred HcCCHHHHHHHHHhhhhcCcccccccccCCCCcHH
Q 022200 162 KNDKLKVLKVMLGWLRYVNKDDIINRKDDEGSILL 196 (301)
Q Consensus 162 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~d~~g~tpL 196 (301)
..|+.+++++|+++ |++++.++..|.||-
T Consensus 84 ~~~~~~~~~~Ll~~------ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAK------GADVNARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTT------SSSHHHHSCCCC---
T ss_pred HCCCHHHHHHHHHc------CCCCCcCCccccccc
Confidence 88888888888875 888888888887773
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=2.7e-21 Score=137.01 Aligned_cols=88 Identities=33% Similarity=0.470 Sum_probs=49.7
Q ss_pred CCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCC
Q 022200 87 GCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAKNDK 165 (301)
Q Consensus 87 g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~ 165 (301)
|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.. ..+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 45555555555555555555555555 555555555555555555 4455555555555555555566666666666666
Q ss_pred HHHHHHHHHh
Q 022200 166 LKVLKVMLGW 175 (301)
Q Consensus 166 ~~~~~~Ll~~ 175 (301)
.+++++|+++
T Consensus 81 ~~~~~~Ll~~ 90 (93)
T 1n0q_A 81 LEVVKLLLEA 90 (93)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666666653
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=3.5e-21 Score=164.19 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=112.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHcChhhhhhh---cCCCCCChHHHHHHHc---CCHHHHHHHHHhCCchhhhcCCCCCcHHH
Q 022200 19 QRLNEAAQAGNVDALYELIWEDAYLIDQI---DQVPFVDTHLHIAASM---GHVNFALEIMRLKPSFARKQNQYGCSPLH 92 (301)
Q Consensus 19 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh 92 (301)
++|+.|++.|+++.++.+++.|.+++... .....|+||||+|+.. |+.+++++|+++++++ +.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence 58999999999999999999999865432 1122599999999999 8999999999999887 888999999999
Q ss_pred HHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcc
Q 022200 93 LALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKS 145 (301)
Q Consensus 93 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~ 145 (301)
+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ..+++++|++.|++
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999 999999999999999999 88899999988773
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=4.3e-21 Score=136.02 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=46.8
Q ss_pred CCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHH
Q 022200 17 TDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQ 96 (301)
Q Consensus 17 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~ 96 (301)
|.||||+|++.|+.++++.|++.|.+++.... .|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~---~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK---NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT---TSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC---CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 44555555555555555555555554433222 2555555555555555555555555443 4445555555555555
Q ss_pred CCCHHHHHHHhhcCC
Q 022200 97 NSHTQMVLRLIDVDR 111 (301)
Q Consensus 97 ~~~~~~v~~Ll~~~~ 111 (301)
.|+.+++++|++.|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 555555555555544
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.85 E-value=2.8e-21 Score=170.73 Aligned_cols=145 Identities=16% Similarity=0.083 Sum_probs=112.4
Q ss_pred CCHHHHHHHHh-CCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHH
Q 022200 17 TDQRLNEAAQA-GNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLAL 95 (301)
Q Consensus 17 ~~~~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~ 95 (301)
+.++||.|+.. |++++++.|++.|++++.... ...|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~-~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNG-GQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCcccc-ccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 34699999999 999999999999998865431 125999999999999999999999999877 788999999999999
Q ss_pred HCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCc---chhccccCCCcHHHHHHHcC
Q 022200 96 QNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPK---SILQVTIRKETALYVAAKND 164 (301)
Q Consensus 96 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~---~~~~~d~~g~t~Lh~A~~~g 164 (301)
..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|+..+. +....+..+.|+++.+....
T Consensus 277 ~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 277 ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999 999999999999999999 7788888876553 33455667888888776543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=5.8e-21 Score=140.73 Aligned_cols=103 Identities=25% Similarity=0.337 Sum_probs=76.6
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc
Q 022200 52 FVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN 131 (301)
Q Consensus 52 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 131 (301)
.|+||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~~ 85 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKN 85 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHC
Confidence 4777777777777777777777777664 66677777777777777777777777777777 777777777777777777
Q ss_pred -HHHHHHHHHhCCcchhccccCCCcH
Q 022200 132 -VDLLYKFLTACPKSILQVTIRKETA 156 (301)
Q Consensus 132 -~~~~~~lL~~~~~~~~~~d~~g~t~ 156 (301)
...++++|+++|++++..+..|.+|
T Consensus 86 ~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 86 GHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp TCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CCHHHHHHHHHcCCCCCcCCcccccc
Confidence 6677777777777777777777765
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=1.7e-18 Score=126.46 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-HHHHHHHHHhCCcchhccccCCCcHHHHHHH
Q 022200 84 NQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN-VDLLYKFLTACPKSILQVTIRKETALYVAAK 162 (301)
Q Consensus 84 ~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~ 162 (301)
|.+|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+.. ...++++|++.|++++.+|..|+||||+|+.
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 99 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence 44555555555555555555555555554 455555555555555555 4445555555555555555555555555555
Q ss_pred cCCHHHHHHH
Q 022200 163 NDKLKVLKVM 172 (301)
Q Consensus 163 ~g~~~~~~~L 172 (301)
.|+.+++++|
T Consensus 100 ~~~~~~~~~L 109 (110)
T 2zgd_A 100 NGNEDLAEIL 109 (110)
T ss_dssp HTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 5555555544
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1.1e-17 Score=122.16 Aligned_cols=84 Identities=25% Similarity=0.338 Sum_probs=43.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHHHHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc-
Q 022200 53 VDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN- 131 (301)
Q Consensus 53 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~- 131 (301)
|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~ 101 (110)
T 2zgd_A 24 LGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNG 101 (110)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHHHHHHHcC
Confidence 455555555555555555555554433 44455555555555555555555555555555 455555555555555554
Q ss_pred HHHHHHH
Q 022200 132 VDLLYKF 138 (301)
Q Consensus 132 ~~~~~~l 138 (301)
..+++++
T Consensus 102 ~~~~~~~ 108 (110)
T 2zgd_A 102 NEDLAEI 108 (110)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444443
No 115
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.94 E-value=6.4 Score=30.12 Aligned_cols=133 Identities=17% Similarity=0.097 Sum_probs=88.7
Q ss_pred cCCCHHHHHHHHhCCHHHHHHHHHcChhhhhhhcCCCCCChHHHHHHHcCCHHHHHHHHHhCCchhhhcCCCCCcHHHHH
Q 022200 15 SRTDQRLNEAAQAGNVDALYELIWEDAYLIDQIDQVPFVDTHLHIAASMGHVNFALEIMRLKPSFARKQNQYGCSPLHLA 94 (301)
Q Consensus 15 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpLh~A 94 (301)
.+.++.+-.|...|+++....+.+...+... ....=..|...|+.++++....+-.+... .+.+.
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~-------Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--------L~~Ly 70 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKLNDSIT-------WERLIQEALAQGNASLAEMIYQTQHSFDK--------LSFLY 70 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------HHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHhCCHHH-------HHHHHHHHHHcCChHHHHHHHHHhCCHHH--------HHHHH
Confidence 4456789999999999998887664321111 23344567789999999999988665522 24555
Q ss_pred HHCCCHHHHHHHhhcCCccceecCCCCCchhHHHHhc--HHHHHHHHHhCCcchhccccCCCcHHHHHHHcCCHHHHHHH
Q 022200 95 LQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYVAEN--VDLLYKFLTACPKSILQVTIRKETALYVAAKNDKLKVLKVM 172 (301)
Q Consensus 95 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~--~~~~~~lL~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~~~~L 172 (301)
...|+.+-++.+.+... ...+....++.+... .+.++++|.+.|--. -+...|-.+|..++.+.+
T Consensus 71 ~~tg~~e~L~kla~iA~-----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~--------eA~~~A~t~g~~~~a~~~ 137 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQ-----TREDFGSMLLNTFYNNSTKERSSIFAEGGSLP--------LAYAVAKANGDEAAASAF 137 (177)
T ss_dssp HHHTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH--------HHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH-----HCccHHHHHHHHHHcCCHHHHHHHHHHCCChH--------HHHHHHHHcCcHHHHHHH
Confidence 55688887776654321 122233456665544 888999887764322 245677789999999999
Q ss_pred HHh
Q 022200 173 LGW 175 (301)
Q Consensus 173 l~~ 175 (301)
++.
T Consensus 138 ~~~ 140 (177)
T 3mkq_B 138 LEQ 140 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=52.31 E-value=28 Score=30.29 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=35.5
Q ss_pred HHHHhCCHHHHHHHHHcChhhhhh-----------hcCCCCCChHHHHHHHcCCHHHHHHHHH
Q 022200 23 EAAQAGNVDALYELIWEDAYLIDQ-----------IDQVPFVDTHLHIAASMGHVNFALEIMR 74 (301)
Q Consensus 23 ~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~ 74 (301)
..+..|+...|+.-+..|.++... .+....|.|.+|+|++..+-+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 345679999999999988875322 1222346777777777777777766665
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=42.98 E-value=17 Score=19.88 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCHHHHHHHH
Q 022200 19 QRLNEAAQAGNVDALYELI 37 (301)
Q Consensus 19 ~~L~~A~~~g~~~~v~~Ll 37 (301)
..++.||..|+.+.++.|-
T Consensus 15 QqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 3578888888888888764
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.84 E-value=1.2e+02 Score=26.39 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=38.2
Q ss_pred HHHHcCCHHHHHHHHHhCCchhhh-------------cCCCCCcHHHHHHHCCCHHHHHHHhhc
Q 022200 59 IAASMGHVNFALEIMRLKPSFARK-------------QNQYGCSPLHLALQNSHTQMVLRLIDV 109 (301)
Q Consensus 59 ~A~~~g~~~~v~~Ll~~~~~~~~~-------------~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 109 (301)
+.+..|+...|+.-+..|++.... .-..|.|.+|+|++..+.+++-.|+..
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 345678888888777776644211 124699999999999999999999973
Done!