Query 022202
Match_columns 301
No_of_seqs 142 out of 352
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 1.9E-99 4E-104 716.0 23.1 252 6-301 102-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 1.6E-85 3.5E-90 606.2 17.8 245 13-295 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.5E-20 3.4E-25 184.8 4.3 78 209-296 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.5 2E-05 4.3E-10 76.5 21.2 58 233-296 287-344 (346)
5 PF04525 Tub_2: Tubby C 2; In 54.3 69 0.0015 28.0 7.8 79 18-99 62-145 (187)
6 PF08512 Rtt106: Histone chape 22.5 1.1E+02 0.0024 24.2 3.4 58 209-273 20-78 (95)
7 TIGR03562 osmo_induc_OsmC pero 17.7 99 0.0021 26.1 2.3 14 281-294 42-55 (135)
8 PF03803 Scramblase: Scramblas 17.6 4.7E+02 0.01 23.2 6.8 25 75-99 112-138 (221)
9 cd08695 C2_Dock-B C2 domains f 17.6 2E+02 0.0044 26.0 4.3 18 209-226 57-74 (189)
10 PRK15095 FKBP-type peptidyl-pr 16.3 2.2E+02 0.0047 24.6 4.1 25 259-283 107-131 (156)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.9e-99 Score=715.97 Aligned_cols=252 Identities=59% Similarity=0.931 Sum_probs=226.6
Q ss_pred EeeeeeCCCCCCceEEEEEEEeccCCeEEEEeecccccC--CCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCceeeE
Q 022202 6 VWLRILQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK 83 (301)
Q Consensus 6 ~~~~L~qP~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~--~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yvGK 83 (301)
.|++|+||||+|.++||+|+|||+|++|+||+.|++++. |++||||||||+|++||+|||||+|++||||++++||||
T Consensus 102 ~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGk 181 (355)
T KOG2502|consen 102 FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGK 181 (355)
T ss_pred hhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeee
Confidence 499999999999999999999999999999999998764 779999999999999999999999999999999999999
Q ss_pred eeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCccccc
Q 022202 84 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIE 163 (301)
Q Consensus 84 LRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~i~ 163 (301)
|||||+||||||||+|.+. ++.++ ++|.+++|||+|+||+||||+||||||+|+||.||.++
T Consensus 182 lRSN~lGTKFtVyD~g~~~----------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~-- 243 (355)
T KOG2502|consen 182 LRSNLLGTKFTVYDNGVNP----------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA-- 243 (355)
T ss_pred eecccccceEEEecCCCCc----------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--
Confidence 9999999999999998321 12222 57889999999999999999999999999999999877
Q ss_pred CCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeecccccee
Q 022202 164 SGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNF 243 (301)
Q Consensus 164 ~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNF 243 (301)
++|..|.|++..+. ..+..+++...+++++|+||.|+||+++||||||||||||+||||||
T Consensus 244 ~~~~v~~q~~~~~~-------------------~~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNF 304 (355)
T KOG2502|consen 244 PGGRVPVQPENDHP-------------------SLLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNF 304 (355)
T ss_pred CCCccccccccccc-------------------chhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecce
Confidence 78888876655331 11223334446899999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022202 244 QLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301 (301)
Q Consensus 244 qLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~KlaCe 301 (301)
|||+.. ++++|||||||||+|.|||||+||||+||||||||||||+|||||
T Consensus 305 QLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 305 QLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE 355 (355)
T ss_pred EEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence 999984 679999999999999999999999999999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=1.6e-85 Score=606.18 Aligned_cols=245 Identities=56% Similarity=0.920 Sum_probs=184.3
Q ss_pred CCCCCceEEEEEEEeccCCeEEEEeecccccC-CCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCceeeEeeecceec
Q 022202 13 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNALA-DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 91 (301)
Q Consensus 13 P~P~~~~iqC~I~R~k~~~~Y~Lyl~~~~~~~-~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yvGKLRSNflGT 91 (301)
|||++++|||+|+|||+|.++.||+.|+.++. ++++|||||||+++++||||+||++++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999987767776666544 89999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCcccccCCCCCCcc
Q 022202 92 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQ 171 (301)
Q Consensus 92 kF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~i~~gg~~p~~ 171 (301)
+|+|||+|.+++.+. ..+|+.+..|+|||+|.||+||||++|||||+|+||.|+.+..++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999996554332 1245667789999999999999999999999999999987766555544322
Q ss_pred eeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeeccccceeEEEeCCCC
Q 022202 172 TEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN 251 (301)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNFqLv~~~~~ 251 (301)
|. ....+...........+++++|+||+|+||+++++|+|||+|||++|||||||||++.
T Consensus 148 --------------p~----~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~-- 207 (246)
T PF01167_consen 148 --------------PL----NQEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS-- 207 (246)
T ss_dssp ---------------S----S-CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT--
T ss_pred --------------cc----ccccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC--
Confidence 00 0001111122223456799999999999999999999999999999999999999973
Q ss_pred CCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022202 252 GPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 295 (301)
Q Consensus 252 ~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd 295 (301)
+.+++||||||+++|.|+|||+|||||+|||||||||||
T Consensus 208 -----~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 208 -----DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -----BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 688999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.80 E-value=1.5e-20 Score=184.80 Aligned_cols=78 Identities=42% Similarity=0.731 Sum_probs=72.8
Q ss_pred ceEEeecCCCccccccccEEeecCCeeeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHH
Q 022202 209 GALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFA 288 (301)
Q Consensus 209 ~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFa 288 (301)
.+.++.||+|.|||..|-|+|||.||||+.|.||||+-.. .+.|||||+++.+.|++||+||||+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 4569999999999999999999999999999999999764 588999999999999999999999999999
Q ss_pred HHHHcCcc
Q 022202 289 ICLSSFDT 296 (301)
Q Consensus 289 iaLssfd~ 296 (301)
+||++.--
T Consensus 555 valanvtq 562 (565)
T KOG2503|consen 555 VALANVTQ 562 (565)
T ss_pred HHHhhhhh
Confidence 99998643
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.53 E-value=2e-05 Score=76.51 Aligned_cols=58 Identities=21% Similarity=0.452 Sum_probs=47.1
Q ss_pred CeeeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCcc
Q 022202 233 GRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDT 296 (301)
Q Consensus 233 gRv~~aSvKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~ 296 (301)
.+...+.-+=|.|.... ..++..+|-+--+.++.|.+||+..||+||||+||++-.+.
T Consensus 287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 44555567778888753 23444899999999999999999999999999999987764
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=54.26 E-value=69 Score=28.04 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=31.3
Q ss_pred ceEEEEEEEeccC--CeEEEEeecccccCCCCeEEEEEEeccC-CCCceEEEEecCC-CC-CCCCCceeeEeeecceecE
Q 022202 18 YLLQCFIKRNRST--QTYHLYLSLTNALADDGKFLLAARKCRR-ATCTDYIISLHSD-DM-SKGSSTYLGKLRSNFLGTK 92 (301)
Q Consensus 18 ~~iqC~I~R~k~~--~~Y~Lyl~~~~~~~~~~kfLLaArKr~~-~~tSnYiISld~~-dl-Sr~s~~yvGKLRSNflGTk 92 (301)
|..-..|+|..-+ ++|..|.+.. .++.+.+...||... ....+..+.+.+. .. .-.+...-=+|+.||++.+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 4455677774333 5899998521 223457787877621 2223333333322 11 0112233346899999999
Q ss_pred EEEecCC
Q 022202 93 FIVYDGQ 99 (301)
Q Consensus 93 F~iYD~g 99 (301)
|+|||.+
T Consensus 139 ~~I~~~~ 145 (187)
T PF04525_consen 139 FTIYDSG 145 (187)
T ss_dssp -EEEECC
T ss_pred EEEEEcC
Confidence 9999743
No 6
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=22.48 E-value=1.1e+02 Score=24.16 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=35.5
Q ss_pred ceEEe-ecCCCccccccccEEeecCCeeeccccceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeE
Q 022202 209 GALVL-RNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLF 273 (301)
Q Consensus 209 ~~~~l-~~k~P~w~~~~~~y~LnF~gRv~~aSvKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F 273 (301)
+.+.+ ..|||.+=.-..--.++| .||...+.|+|.|+-.- .+.+....+|.-|.++.+
T Consensus 20 ~~l~f~~~kP~~~i~~~dI~~v~f-eRv~~~~~ktFDl~v~~------k~~~~~~~~fs~I~~~e~ 78 (95)
T PF08512_consen 20 KCLLFGLEKPPFVIPLDDIESVEF-ERVSSFSSKTFDLVVIL------KDYEGPPHEFSSIDREEY 78 (95)
T ss_dssp SEEEEECSSS-EEEEGGGEEEEEE-E--ESSSSSEEEEEEEE------TT-TS-EEEEEEEEGGGH
T ss_pred ceEEEecCCCeEEEEhhHeeEEEE-EecccCcceEEEEEEEE------ecCCCCcEEEeeECHHHH
Confidence 45555 778776655444444555 46688999999999763 123467788888876654
No 7
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=17.72 E-value=99 Score=26.09 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHcC
Q 022202 281 ISAFQAFAICLSSF 294 (301)
Q Consensus 281 lS~~QAFaiaLssf 294 (301)
.+|.|.|+.||++|
T Consensus 42 ~nPeeLLlaAlaaC 55 (135)
T TIGR03562 42 TNPEELIAAAHAGC 55 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999987
No 8
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=17.57 E-value=4.7e+02 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCCCceeeEeee--cceecEEEEecCC
Q 022202 75 KGSSTYLGKLRS--NFLGTKFIVYDGQ 99 (301)
Q Consensus 75 r~s~~yvGKLRS--NflGTkF~iYD~g 99 (301)
...+.+||+++. ++.+.+|.|+|.+
T Consensus 112 ~p~g~~iG~I~q~~~~~~~~f~I~d~~ 138 (221)
T PF03803_consen 112 SPPGNLIGSIRQPFSCCRPNFDIFDAN 138 (221)
T ss_pred cCCCcEEEEEEEcCcccceEEEEEECC
Confidence 456789999998 5579999999986
No 9
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=17.56 E-value=2e+02 Score=25.98 Aligned_cols=18 Identities=28% Similarity=0.779 Sum_probs=14.2
Q ss_pred ceEEeecCCCcccccccc
Q 022202 209 GALVLRNKAPRWHEQLQC 226 (301)
Q Consensus 209 ~~~~l~~k~P~w~~~~~~ 226 (301)
..+..+++.|.|+|..+-
T Consensus 57 S~V~yH~~~P~W~EtiKi 74 (189)
T cd08695 57 SFVLYHNNSPRWNETIKL 74 (189)
T ss_pred EEEEEcCCCCCCceeEEE
Confidence 557778999999997544
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=16.34 E-value=2.2e+02 Score=24.62 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=20.3
Q ss_pred CeEEEEeeecCCCeEEEEccCCCCH
Q 022202 259 EKIILQFGKVGKDLFTMDYRYPISA 283 (301)
Q Consensus 259 ~~ivlqfGK~~~~~F~lD~~~PlS~ 283 (301)
+.+....-+++++..++||.|||..
T Consensus 107 ~~~~~~V~~i~~~~v~vD~NHPLAG 131 (156)
T PRK15095 107 SEMPGVIREINGDSITVDFNHPLAG 131 (156)
T ss_pred CEEEEEEEEEcCCEEEEECCCcCCC
Confidence 4455567789999999999999963
Done!