Query 022202
Match_columns 301
No_of_seqs 142 out of 352
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 1.1E-89 3.7E-94 641.3 22.3 245 7-301 26-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 4.5E-87 1.5E-91 615.0 22.6 238 8-295 3-246 (246)
3 1zxu_A AT5G01750 protein; PFAM 37.4 1.2E+02 0.0043 25.7 8.1 52 45-99 83-137 (217)
4 2ypj_A Eccel5A, endoglucanase 19.1 71 0.0024 25.9 2.8 28 240-274 67-94 (155)
5 1lql_A OSMC, osmotical inducib 18.8 65 0.0022 26.6 2.7 14 281-294 64-77 (166)
6 4ba6_A Endoglucanase CEL5A; ca 18.4 76 0.0026 25.4 2.8 27 241-274 49-75 (144)
7 2ql8_A Putative redox protein; 16.8 84 0.0029 25.0 2.8 14 281-294 46-59 (143)
8 3cgm_A SLYD, peptidyl-prolyl C 16.3 1.6E+02 0.0056 24.1 4.6 24 260-283 100-123 (158)
9 2kr7_A FKBP-type peptidyl-prol 14.5 2.1E+02 0.0073 23.1 4.8 23 260-282 109-131 (151)
10 1zxu_A AT5G01750 protein; PFAM 14.0 2.7E+02 0.0091 23.6 5.5 43 240-292 154-204 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.1e-89 Score=641.25 Aligned_cols=245 Identities=40% Similarity=0.701 Sum_probs=186.9
Q ss_pred eeeeeCCCCCCceEEEEEEEeccC------CeEEEEeecccccCCCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCce
Q 022202 7 WLRILQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTY 80 (301)
Q Consensus 7 ~~~L~qP~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~y 80 (301)
.-+|+||+|+++++||+|+|+|+| ++|+||++ .++++|||||||+++++|+||+||+|++||||++++|
T Consensus 26 ~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~y 100 (276)
T 2fim_A 26 REFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENF 100 (276)
T ss_dssp TTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CE
T ss_pred HHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceE
Confidence 458999999999999999999998 59999995 4678999999999999999999999999999999999
Q ss_pred eeEeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCcc
Q 022202 81 LGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPAS 160 (301)
Q Consensus 81 vGKLRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~ 160 (301)
||||||||+||+|+|||+|.+++. ..+|+++.+|+|||+|.||+|+||++|||+|+|+||.+.
T Consensus 101 vGKLrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~-- 163 (276)
T 2fim_A 101 IGKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS-- 163 (276)
T ss_dssp EEEEEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC--
T ss_pred EEEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc--
Confidence 999999999999999999954321 124556678899999999999999999999999998542
Q ss_pred cccCCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeecccc
Q 022202 161 AIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASV 240 (301)
Q Consensus 161 ~i~~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSv 240 (301)
++++..|.+ +. ...|..+.++++...+++++|+||+|+|||++|||||||+||||+|||
T Consensus 164 --~~~~~~~~~----p~---------------~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSv 222 (276)
T 2fim_A 164 --AENERVPIR----PR---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASV 222 (276)
T ss_dssp --TTSCBCCCC----CS---------------STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCT
T ss_pred --cCCCEeccc----CC---------------CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeecccc
Confidence 222222210 00 011112222334456789999999999999999999999999999999
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCccccccC
Q 022202 241 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 301 (301)
Q Consensus 241 KNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd~KlaCe 301 (301)
||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||+|||||
T Consensus 223 KNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 223 KNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp TCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 999999974 678999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=4.5e-87 Score=614.99 Aligned_cols=238 Identities=39% Similarity=0.693 Sum_probs=191.4
Q ss_pred eeeeCCCCCCceEEEEEEEeccC------CeEEEEeecccccCCCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCcee
Q 022202 8 LRILQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYL 81 (301)
Q Consensus 8 ~~L~qP~P~~~~iqC~I~R~k~~------~~Y~Lyl~~~~~~~~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yv 81 (301)
-+|+||+|+|++|||+|+|||+| ++|+||++ .++++|||||||+++++||||+||+|++|+||++++||
T Consensus 3 ~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv 77 (246)
T 3c5n_A 3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 77 (246)
T ss_dssp TGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred hHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence 37999999999999999999998 58999985 45678999999999999999999999999999999999
Q ss_pred eEeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEEeccCCccc
Q 022202 82 GKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASA 161 (301)
Q Consensus 82 GKLRSNflGTkF~iYD~g~p~~~a~~~~~~~~~~~~~~~~sp~~~~~~~ela~V~Ye~Nvlg~rgPRkM~v~ip~Ip~~~ 161 (301)
|||||||+||+|+|||+|.+++. ..+|.++.+|+|||+|.||+|+||++|||+|+|+||.+.
T Consensus 78 GKLrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~--- 139 (246)
T 3c5n_A 78 GKLRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS--- 139 (246)
T ss_dssp EEEEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC---
T ss_pred EEEEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc---
Confidence 99999999999999999954321 124556678899999999999999999999999998542
Q ss_pred ccCCCCCCcceeeeccCCCCCCCccccccCcccccccccCCcccCCCceEEeecCCCccccccccEEeecCCeeeccccc
Q 022202 162 IESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVK 241 (301)
Q Consensus 162 i~~gg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~y~LnF~gRv~~aSvK 241 (301)
++++..|.+ +. ...|..+.++++...+++++|+||+|+|||++|||||||+||||+||||
T Consensus 140 -~~~~~~~~~----p~---------------~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvK 199 (246)
T 3c5n_A 140 -AENERVPIR----PR---------------NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVK 199 (246)
T ss_dssp -TTSCBCCCC----CS---------------STTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTT
T ss_pred -cCCCEeecc----CC---------------CccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccc
Confidence 223222210 00 0111122223344567899999999999999999999999999999999
Q ss_pred eeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEEEEccCCCCHHHHHHHHHHcCc
Q 022202 242 NFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 295 (301)
Q Consensus 242 NFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~lD~~~PlS~~QAFaiaLssfd 295 (301)
|||||+++ ++++||||||||++|.|+|||+|||||||||||||||||
T Consensus 200 NFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 200 NFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred eEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 99999974 678999999999999999999999999999999999998
No 3
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=37.39 E-value=1.2e+02 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCeEEEEEEeccCCCCceEEEEecCCCCCCCCCceeeEeeec--c-eecEEEEecCC
Q 022202 45 DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSN--F-LGTKFIVYDGQ 99 (301)
Q Consensus 45 ~~~kfLLaArKr~~~~tSnYiISld~~dlSr~s~~yvGKLRSN--f-lGTkF~iYD~g 99 (301)
..|+.|+.-|+...+-...|-|...... ....-||.+|.. + ++++|.|.+.+
T Consensus 83 ~~G~~l~~i~rk~~~~~~~~~v~~~~~~---~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 83 GSGTPVVTLREKMVSMHDRWQVFRGGST---DQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEEC------CEEEEEETTCC---CGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccccCcEEEEEcCCCC---CCCcEEEEEEEeccccCCCeEEEEECC
Confidence 4566666666544444456655432211 112357777754 3 46677777664
No 4
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=19.06 E-value=71 Score=25.89 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=21.4
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEE
Q 022202 240 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 274 (301)
Q Consensus 240 vKNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~ 274 (301)
-|||.+-.+- +...|||.|.|+.++.+.
T Consensus 67 nknfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 67 NKNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp TSCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 3899986531 356899999999998764
No 5
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=18.82 E-value=65 Score=26.58 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcC
Q 022202 281 ISAFQAFAICLSSF 294 (301)
Q Consensus 281 lS~~QAFaiaLssf 294 (301)
.+|.|.|+.||++|
T Consensus 64 ~nP~ELllaalaaC 77 (166)
T 1lql_A 64 FGPLAALLSGLAAC 77 (166)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 59999999999986
No 6
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=18.41 E-value=76 Score=25.45 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=21.0
Q ss_pred ceeEEEeCCCCCCCCCCCCeEEEEeeecCCCeEE
Q 022202 241 KNFQLVASPENGPAGLEHEKIILQFGKVGKDLFT 274 (301)
Q Consensus 241 KNFqLv~~~~~~~~~~~~~~ivlqfGK~~~~~F~ 274 (301)
|||.+-..- +...|||.|.|+.++.+.
T Consensus 49 knfeikvdy-------~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 49 KNFEIKVDY-------NGADIVLIFARWDKDIWA 75 (144)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899886531 356899999999998764
No 7
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=16.78 E-value=84 Score=25.02 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcC
Q 022202 281 ISAFQAFAICLSSF 294 (301)
Q Consensus 281 lS~~QAFaiaLssf 294 (301)
.+|.|.|+.||++|
T Consensus 46 ~nP~eLllaala~C 59 (143)
T 2ql8_A 46 TNPEQLLGLSLSTC 59 (143)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999986
No 8
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=16.32 E-value=1.6e+02 Score=24.15 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=18.8
Q ss_pred eEEEEeeecCCCeEEEEccCCCCH
Q 022202 260 KIILQFGKVGKDLFTMDYRYPISA 283 (301)
Q Consensus 260 ~ivlqfGK~~~~~F~lD~~~PlS~ 283 (301)
.+....=+++++..++||.+||..
T Consensus 100 ~~~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 100 PMPLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEEEECCCEEEEeCCccccC
Confidence 334446678999999999999963
No 9
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=14.45 E-value=2.1e+02 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.5
Q ss_pred eEEEEeeecCCCeEEEEccCCCC
Q 022202 260 KIILQFGKVGKDLFTMDYRYPIS 282 (301)
Q Consensus 260 ~ivlqfGK~~~~~F~lD~~~PlS 282 (301)
.+....=+++++.-++||.|||.
T Consensus 109 ~~~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 109 TIQAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEEEECCCEEEEECCCcCC
Confidence 34445667899999999999995
No 10
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=13.99 E-value=2.7e+02 Score=23.59 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=26.7
Q ss_pred cceeEEEeCCCCCCCCCCCCeEEEEeeec--------CCCeEEEEccCCCCHHHHHHHHHH
Q 022202 240 VKNFQLVASPENGPAGLEHEKIILQFGKV--------GKDLFTMDYRYPISAFQAFAICLS 292 (301)
Q Consensus 240 vKNFqLv~~~~~~~~~~~~~~ivlqfGK~--------~~~~F~lD~~~PlS~~QAFaiaLs 292 (301)
-.+|.++.. +.+.+|.+.-|- ++|.|.|++.--+- .||++||.
T Consensus 154 ~~~f~I~~~--------~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D--~aliialv 204 (217)
T 1zxu_A 154 ERSCVVYAG--------ESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVD--YAFIASLV 204 (217)
T ss_dssp TTCCEEEET--------TTCCEEEEEEEC--------CBCSEEEEECTTSB--HHHHHHHH
T ss_pred CCEEEEEEC--------CCCEEEEEEEeeeeccccccCCcEEEEEECCCCC--HHHHHHHH
Confidence 357777753 224666666663 66999999943233 36666654
Done!