Query 022205
Match_columns 301
No_of_seqs 403 out of 3683
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3060 Uncharacterized conser 100.0 6.8E-36 1.5E-40 230.5 30.3 286 1-300 1-288 (289)
2 KOG4626 O-linked N-acetylgluco 100.0 2E-27 4.3E-32 204.1 17.2 227 55-285 243-471 (966)
3 KOG4626 O-linked N-acetylgluco 99.9 5.5E-25 1.2E-29 189.2 23.0 193 57-253 313-505 (966)
4 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-21 2.9E-26 180.4 31.3 212 36-258 344-562 (615)
5 TIGR00990 3a0801s09 mitochondr 99.9 2E-21 4.4E-26 179.3 30.4 174 59-235 326-499 (615)
6 KOG1126 DNA-binding cell divis 99.9 1.8E-23 3.9E-28 181.4 15.3 194 60-257 417-610 (638)
7 KOG1126 DNA-binding cell divis 99.9 4E-23 8.7E-28 179.2 14.8 222 63-288 352-609 (638)
8 KOG1125 TPR repeat-containing 99.9 1.7E-21 3.6E-26 166.8 18.4 184 69-256 290-516 (579)
9 TIGR02521 type_IV_pilW type IV 99.9 3.2E-20 6.9E-25 150.3 25.3 188 62-253 29-218 (234)
10 KOG1155 Anaphase-promoting com 99.9 4.9E-21 1.1E-25 159.9 20.1 212 70-285 336-556 (559)
11 COG3063 PilF Tfp pilus assembl 99.9 1.8E-20 3.8E-25 143.8 21.3 188 62-253 33-222 (250)
12 PRK12370 invasion protein regu 99.9 2.5E-20 5.3E-25 169.4 25.6 192 58-253 289-490 (553)
13 PRK15174 Vi polysaccharide exp 99.9 8.6E-20 1.9E-24 168.6 28.9 195 60-258 106-338 (656)
14 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.4E-24 167.9 27.7 211 36-257 55-303 (656)
15 PRK12370 invasion protein regu 99.9 4.7E-20 1E-24 167.6 23.8 216 78-296 275-501 (553)
16 PRK09782 bacteriophage N4 rece 99.9 5.1E-19 1.1E-23 167.7 31.0 178 66-248 544-721 (987)
17 KOG1155 Anaphase-promoting com 99.9 1.8E-19 3.8E-24 150.7 24.2 194 60-257 258-485 (559)
18 PRK11189 lipoprotein NlpI; Pro 99.9 5.4E-19 1.2E-23 148.3 26.8 195 40-242 43-275 (296)
19 PRK11447 cellulose synthase su 99.9 4.2E-19 9.1E-24 174.1 27.7 207 36-253 282-544 (1157)
20 KOG0547 Translocase of outer m 99.8 8.8E-20 1.9E-24 153.4 18.1 198 57-258 353-557 (606)
21 PRK11788 tetratricopeptide rep 99.8 1.1E-18 2.4E-23 152.8 25.9 172 60-234 65-245 (389)
22 TIGR02917 PEP_TPR_lipo putativ 99.8 1E-18 2.2E-23 167.9 27.9 204 37-253 649-852 (899)
23 PRK09782 bacteriophage N4 rece 99.8 2.4E-18 5.3E-23 163.1 29.0 206 37-256 490-695 (987)
24 PRK11447 cellulose synthase su 99.8 2E-18 4.3E-23 169.3 29.1 191 60-254 381-687 (1157)
25 TIGR02917 PEP_TPR_lipo putativ 99.8 9.1E-19 2E-23 168.2 26.1 191 60-254 461-651 (899)
26 TIGR02521 type_IV_pilW type IV 99.8 5.6E-18 1.2E-22 137.1 24.6 190 35-234 43-234 (234)
27 PRK11788 tetratricopeptide rep 99.8 9.4E-18 2E-22 147.0 27.6 190 63-257 106-301 (389)
28 PLN02789 farnesyltranstransfer 99.8 1.1E-17 2.3E-22 140.5 24.9 216 23-250 38-267 (320)
29 KOG1173 Anaphase-promoting com 99.8 1.2E-18 2.6E-23 149.0 18.5 196 60-259 308-510 (611)
30 TIGR03302 OM_YfiO outer membra 99.8 1E-17 2.2E-22 136.6 21.4 174 58-234 27-234 (235)
31 KOG1125 TPR repeat-containing 99.8 3.3E-18 7.2E-23 146.8 18.9 191 60-253 315-557 (579)
32 KOG1173 Anaphase-promoting com 99.8 9.4E-18 2E-22 143.6 18.7 185 57-245 339-530 (611)
33 KOG0547 Translocase of outer m 99.8 7.6E-18 1.7E-22 141.9 17.3 210 23-235 344-569 (606)
34 PRK15359 type III secretion sy 99.8 7.1E-18 1.5E-22 126.1 15.2 120 87-209 16-135 (144)
35 PRK15359 type III secretion sy 99.8 8.9E-18 1.9E-22 125.5 15.7 128 118-252 13-140 (144)
36 PLN02789 farnesyltranstransfer 99.8 6.7E-17 1.4E-21 135.7 22.7 223 60-283 33-268 (320)
37 PF13429 TPR_15: Tetratricopep 99.8 2E-18 4.3E-23 144.3 13.4 193 60-258 74-268 (280)
38 PF13429 TPR_15: Tetratricopep 99.8 3.4E-18 7.3E-23 143.0 13.9 166 64-232 110-277 (280)
39 PRK11189 lipoprotein NlpI; Pro 99.8 3.2E-16 7E-21 131.6 24.9 154 77-234 39-196 (296)
40 PRK10370 formate-dependent nit 99.8 2.6E-16 5.5E-21 123.9 19.1 151 71-235 23-176 (198)
41 KOG1129 TPR repeat-containing 99.7 4.7E-17 1E-21 131.0 14.3 188 63-254 255-445 (478)
42 KOG1129 TPR repeat-containing 99.7 4.5E-17 9.8E-22 131.1 10.8 183 60-246 286-471 (478)
43 KOG2002 TPR-containing nuclear 99.7 1.2E-15 2.6E-20 138.0 21.0 189 63-255 563-767 (1018)
44 TIGR03302 OM_YfiO outer membra 99.7 9.3E-16 2E-20 124.9 18.5 158 95-255 30-220 (235)
45 PRK15179 Vi polysaccharide bio 99.7 3.1E-15 6.7E-20 137.2 23.7 159 80-242 68-226 (694)
46 PRK10370 formate-dependent nit 99.7 1E-15 2.2E-20 120.5 17.6 125 77-201 52-179 (198)
47 COG3063 PilF Tfp pilus assembl 99.7 6.6E-15 1.4E-19 113.4 21.4 173 60-235 65-239 (250)
48 PRK10049 pgaA outer membrane p 99.7 5.5E-15 1.2E-19 139.4 24.7 165 70-238 278-461 (765)
49 PRK10049 pgaA outer membrane p 99.7 7E-15 1.5E-19 138.7 25.1 179 73-255 246-444 (765)
50 PRK14574 hmsH outer membrane p 99.7 4.6E-15 1E-19 138.4 22.7 191 58-253 28-218 (822)
51 KOG2003 TPR repeat-containing 99.7 7E-15 1.5E-19 123.4 20.9 195 60-258 486-680 (840)
52 KOG2002 TPR-containing nuclear 99.7 8.7E-15 1.9E-19 132.6 22.2 192 60-254 160-358 (1018)
53 COG2956 Predicted N-acetylgluc 99.7 2.4E-14 5.1E-19 115.4 21.8 209 36-255 48-266 (389)
54 TIGR02552 LcrH_SycD type III s 99.7 4.6E-15 1E-19 110.1 16.2 114 119-235 4-117 (135)
55 KOG1840 Kinesin light chain [C 99.7 1.7E-14 3.8E-19 126.6 21.5 194 57-253 192-424 (508)
56 KOG2076 RNA polymerase III tra 99.7 3.7E-14 8E-19 127.7 23.7 208 38-256 154-501 (895)
57 COG5010 TadD Flp pilus assembl 99.7 1.2E-14 2.6E-19 114.2 18.0 180 80-264 49-228 (257)
58 KOG0624 dsRNA-activated protei 99.7 1.3E-14 2.7E-19 117.9 18.5 196 37-235 36-255 (504)
59 PRK10747 putative protoheme IX 99.7 2.1E-13 4.6E-18 119.4 27.3 177 69-253 158-376 (398)
60 TIGR02552 LcrH_SycD type III s 99.7 5.7E-15 1.2E-19 109.6 14.8 119 85-203 4-122 (135)
61 COG5010 TadD Flp pilus assembl 99.7 2.1E-14 4.5E-19 112.9 18.4 167 60-230 63-229 (257)
62 cd05804 StaR_like StaR_like; a 99.7 2.2E-14 4.9E-19 124.1 20.6 168 63-234 42-217 (355)
63 KOG2003 TPR repeat-containing 99.7 4.4E-14 9.6E-19 118.7 20.9 189 61-253 521-709 (840)
64 COG2956 Predicted N-acetylgluc 99.6 2E-13 4.4E-18 110.0 23.4 212 18-235 48-281 (389)
65 PRK15179 Vi polysaccharide bio 99.6 4.9E-14 1.1E-18 129.4 21.4 143 60-202 82-224 (694)
66 KOG0624 dsRNA-activated protei 99.6 1E-13 2.2E-18 112.7 20.1 192 60-255 34-240 (504)
67 KOG1174 Anaphase-promoting com 99.6 1E-13 2.2E-18 115.2 20.4 181 66-251 302-518 (564)
68 KOG0550 Molecular chaperone (D 99.6 1.6E-14 3.4E-19 119.8 14.6 172 61-235 166-353 (486)
69 PRK15363 pathogenicity island 99.6 1.6E-14 3.4E-19 106.4 13.1 105 126-233 28-133 (157)
70 KOG0548 Molecular co-chaperone 99.6 1.1E-13 2.4E-18 118.4 20.1 170 70-251 304-473 (539)
71 KOG0553 TPR repeat-containing 99.6 1.6E-14 3.5E-19 115.6 13.4 115 101-215 84-198 (304)
72 KOG4162 Predicted calmodulin-b 99.6 1.3E-13 2.9E-18 122.3 20.2 196 55-254 469-770 (799)
73 cd05804 StaR_like StaR_like; a 99.6 4.1E-13 8.8E-18 116.2 23.1 195 60-258 2-206 (355)
74 PRK10747 putative protoheme IX 99.6 1.1E-12 2.3E-17 115.0 25.4 167 60-233 183-391 (398)
75 PRK14720 transcript cleavage f 99.6 1.7E-13 3.7E-18 127.0 20.9 186 58-250 25-269 (906)
76 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.9E-17 114.9 25.5 180 69-253 158-385 (409)
77 KOG0495 HAT repeat protein [RN 99.6 7.7E-13 1.7E-17 115.7 23.2 206 36-253 563-768 (913)
78 KOG0495 HAT repeat protein [RN 99.6 6.1E-13 1.3E-17 116.3 22.2 185 64-252 651-865 (913)
79 PRK15363 pathogenicity island 99.6 8.5E-14 1.8E-18 102.5 14.4 109 89-197 25-134 (157)
80 KOG0553 TPR repeat-containing 99.6 3.5E-14 7.5E-19 113.7 13.1 118 134-255 83-200 (304)
81 COG4783 Putative Zn-dependent 99.6 2E-12 4.2E-17 110.0 24.1 154 61-234 303-456 (484)
82 TIGR00540 hemY_coli hemY prote 99.6 3.2E-12 7E-17 112.5 26.3 239 35-285 96-385 (409)
83 KOG2076 RNA polymerase III tra 99.6 1.6E-12 3.4E-17 117.4 23.6 164 66-232 141-309 (895)
84 KOG3060 Uncharacterized conser 99.6 4E-12 8.6E-17 99.4 21.8 153 61-213 83-238 (289)
85 KOG0548 Molecular co-chaperone 99.5 7E-13 1.5E-17 113.6 18.5 191 65-260 225-448 (539)
86 KOG1840 Kinesin light chain [C 99.5 1.7E-12 3.6E-17 114.2 20.9 194 60-256 237-468 (508)
87 COG4783 Putative Zn-dependent 99.5 6.2E-12 1.3E-16 107.0 23.3 180 51-235 261-440 (484)
88 PLN03088 SGT1, suppressor of 99.5 5.2E-13 1.1E-17 114.7 16.2 105 71-175 9-113 (356)
89 KOG1156 N-terminal acetyltrans 99.5 4.6E-12 1E-16 110.7 21.7 198 41-249 25-264 (700)
90 PLN03088 SGT1, suppressor of 99.5 5.7E-13 1.2E-17 114.5 16.0 112 137-252 7-118 (356)
91 PRK14574 hmsH outer membrane p 99.5 2.8E-11 6.1E-16 113.4 28.4 192 26-228 37-228 (822)
92 KOG1127 TPR repeat-containing 99.5 1.2E-12 2.7E-17 119.1 18.5 192 58-253 486-679 (1238)
93 KOG4162 Predicted calmodulin-b 99.5 9.7E-13 2.1E-17 116.9 15.8 132 69-200 655-788 (799)
94 KOG1174 Anaphase-promoting com 99.5 4.6E-12 9.9E-17 105.5 18.3 181 71-255 205-385 (564)
95 KOG0550 Molecular chaperone (D 99.5 8.3E-13 1.8E-17 109.8 13.1 153 100-256 171-339 (486)
96 PRK10866 outer membrane biogen 99.5 4.1E-11 9E-16 97.3 22.6 162 63-227 31-236 (243)
97 KOG1156 N-terminal acetyltrans 99.5 2.3E-11 4.9E-16 106.5 21.0 167 64-233 7-173 (700)
98 PF13525 YfiO: Outer membrane 99.5 2.4E-11 5.1E-16 96.4 19.5 157 63-222 4-197 (203)
99 KOG1128 Uncharacterized conser 99.5 4.2E-12 9.1E-17 112.4 16.3 183 60-255 394-604 (777)
100 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.7E-11 3.8E-16 88.5 14.1 100 101-200 5-110 (119)
101 COG4235 Cytochrome c biogenesi 99.4 2.4E-11 5.1E-16 98.2 15.9 120 113-235 137-259 (287)
102 cd00189 TPR Tetratricopeptide 99.4 1.3E-11 2.8E-16 84.7 12.0 98 134-234 2-99 (100)
103 PF13414 TPR_11: TPR repeat; P 99.4 3E-12 6.5E-17 83.1 8.1 67 165-234 2-69 (69)
104 PF09976 TPR_21: Tetratricopep 99.4 6E-11 1.3E-15 88.9 16.3 117 75-192 22-144 (145)
105 TIGR02795 tol_pal_ybgF tol-pal 99.4 3.2E-11 7E-16 87.1 13.8 103 132-238 2-110 (119)
106 COG4235 Cytochrome c biogenesi 99.4 4.8E-11 1E-15 96.4 15.8 121 80-200 138-261 (287)
107 PF13414 TPR_11: TPR repeat; P 99.4 5E-12 1.1E-16 82.0 8.4 67 131-197 2-69 (69)
108 KOG1127 TPR repeat-containing 99.4 2.3E-11 5E-16 111.0 15.3 173 78-254 472-646 (1238)
109 cd00189 TPR Tetratricopeptide 99.4 1.9E-11 4.2E-16 83.9 11.8 99 100-198 2-100 (100)
110 PF04733 Coatomer_E: Coatomer 99.4 5.5E-11 1.2E-15 98.9 16.3 165 63-235 101-268 (290)
111 PF13525 YfiO: Outer membrane 99.3 9.8E-11 2.1E-15 92.8 16.8 155 96-253 3-193 (203)
112 CHL00033 ycf3 photosystem I as 99.3 5.1E-11 1.1E-15 91.7 14.4 103 133-235 36-152 (168)
113 KOG1128 Uncharacterized conser 99.3 4.5E-11 9.7E-16 106.0 14.9 149 95-256 395-571 (777)
114 PRK11906 transcriptional regul 99.3 1.2E-10 2.6E-15 99.7 17.1 162 68-232 259-436 (458)
115 PF09976 TPR_21: Tetratricopep 99.3 2E-10 4.4E-15 86.1 16.6 117 110-230 23-145 (145)
116 PRK02603 photosystem I assembl 99.3 1.2E-10 2.5E-15 90.1 15.6 90 97-186 34-126 (172)
117 PLN03218 maturation of RBCL 1; 99.3 3.1E-09 6.7E-14 102.5 28.4 185 64-253 542-734 (1060)
118 PF12569 NARP1: NMDA receptor- 99.3 6E-10 1.3E-14 99.3 22.0 66 167-235 195-260 (517)
119 PRK10153 DNA-binding transcrip 99.3 3.3E-10 7.1E-15 101.5 20.3 140 92-235 331-485 (517)
120 PLN03218 maturation of RBCL 1; 99.3 3.2E-09 7E-14 102.4 27.9 185 64-252 472-663 (1060)
121 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.3E-15 90.0 14.7 122 79-200 14-154 (168)
122 PRK10866 outer membrane biogen 99.3 5.6E-10 1.2E-14 90.7 19.2 155 96-253 30-227 (243)
123 PRK10153 DNA-binding transcrip 99.3 2.4E-10 5.1E-15 102.4 18.3 139 61-201 337-488 (517)
124 PRK15331 chaperone protein Sic 99.3 9.1E-11 2E-15 86.9 12.1 103 127-232 32-134 (165)
125 PF12895 Apc3: Anaphase-promot 99.3 2E-11 4.4E-16 82.4 7.9 81 145-229 2-84 (84)
126 PRK02603 photosystem I assembl 99.3 1.2E-10 2.6E-15 90.0 13.3 108 128-235 31-152 (172)
127 PF12569 NARP1: NMDA receptor- 99.3 1.1E-08 2.3E-13 91.4 27.0 117 134-253 196-320 (517)
128 PF12895 Apc3: Anaphase-promot 99.3 2.2E-11 4.7E-16 82.3 7.4 81 111-192 2-84 (84)
129 PRK14720 transcript cleavage f 99.3 1.5E-10 3.2E-15 107.9 15.0 134 93-232 26-178 (906)
130 PF13432 TPR_16: Tetratricopep 99.3 3E-11 6.5E-16 77.3 7.3 60 139-198 4-63 (65)
131 PRK15331 chaperone protein Sic 99.2 2.4E-10 5.2E-15 84.7 12.1 99 96-194 35-133 (165)
132 PRK10803 tol-pal system protei 99.2 7.6E-10 1.6E-14 90.6 16.2 103 99-201 143-252 (263)
133 PRK11906 transcriptional regul 99.2 2E-09 4.4E-14 92.3 18.5 132 101-235 258-404 (458)
134 KOG0543 FKBP-type peptidyl-pro 99.2 6.4E-10 1.4E-14 93.1 15.0 131 101-234 211-357 (397)
135 PRK10803 tol-pal system protei 99.2 5.7E-09 1.2E-13 85.4 20.4 106 64-169 142-254 (263)
136 COG3071 HemY Uncharacterized e 99.2 5.1E-08 1.1E-12 81.4 25.8 180 66-253 155-376 (400)
137 PF13432 TPR_16: Tetratricopep 99.2 1E-10 2.2E-15 74.9 7.9 64 103-166 2-65 (65)
138 PLN03081 pentatricopeptide (PP 99.2 2.2E-09 4.9E-14 101.0 20.2 161 63-230 289-453 (697)
139 PLN03081 pentatricopeptide (PP 99.2 3.3E-09 7.1E-14 99.9 20.9 248 37-300 304-559 (697)
140 PF04733 Coatomer_E: Coatomer 99.2 2.2E-10 4.7E-15 95.4 11.4 177 68-253 70-250 (290)
141 KOG1130 Predicted G-alpha GTPa 99.2 3.6E-11 7.8E-16 100.3 6.0 185 69-256 100-333 (639)
142 KOG0543 FKBP-type peptidyl-pro 99.2 6.7E-10 1.5E-14 93.0 13.3 116 134-253 210-340 (397)
143 KOG1130 Predicted G-alpha GTPa 99.1 3.5E-11 7.6E-16 100.3 4.4 199 63-264 54-301 (639)
144 PF12688 TPR_5: Tetratrico pep 99.1 3.3E-09 7.1E-14 75.8 13.8 96 99-194 2-103 (120)
145 PF14938 SNAP: Soluble NSF att 99.1 1.4E-08 2.9E-13 84.9 19.4 169 63-235 34-228 (282)
146 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 4.2E-09 9E-14 90.6 16.5 110 77-189 182-291 (395)
147 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 5E-09 1.1E-13 90.2 16.8 120 104-229 175-294 (395)
148 COG4105 ComL DNA uptake lipopr 99.1 4.8E-08 1E-12 77.6 20.8 169 63-235 33-235 (254)
149 KOG4340 Uncharacterized conser 99.1 4.1E-09 9E-14 84.8 14.6 155 75-232 21-207 (459)
150 PLN03077 Protein ECB2; Provisi 99.1 9.2E-08 2E-12 92.3 26.4 220 66-300 457-722 (857)
151 KOG1915 Cell cycle control pro 99.1 2.6E-07 5.7E-12 78.9 24.9 202 37-246 336-548 (677)
152 KOG3785 Uncharacterized conser 99.1 3.9E-08 8.4E-13 81.1 18.9 158 75-235 33-217 (557)
153 PF14559 TPR_19: Tetratricopep 99.1 6.4E-10 1.4E-14 71.8 7.0 64 144-207 3-66 (68)
154 KOG2376 Signal recognition par 99.1 1.2E-07 2.6E-12 82.9 22.8 187 35-235 24-256 (652)
155 COG3071 HemY Uncharacterized e 99.1 1.2E-07 2.6E-12 79.3 21.9 167 59-232 182-390 (400)
156 KOG2376 Signal recognition par 99.0 2.4E-08 5.2E-13 87.1 17.7 178 72-256 20-242 (652)
157 PLN03077 Protein ECB2; Provisi 99.0 2.3E-08 5.1E-13 96.4 19.3 173 70-253 530-706 (857)
158 PF13371 TPR_9: Tetratricopept 99.0 2.3E-09 5E-14 70.2 8.6 67 139-205 2-68 (73)
159 KOG4648 Uncharacterized conser 99.0 7.1E-10 1.5E-14 90.7 6.7 180 68-252 101-315 (536)
160 KOG4234 TPR repeat-containing 99.0 1.5E-08 3.2E-13 77.0 13.1 98 135-235 98-200 (271)
161 PF14559 TPR_19: Tetratricopep 99.0 1.6E-09 3.4E-14 69.9 7.0 65 109-173 2-66 (68)
162 COG1729 Uncharacterized protei 99.0 2.3E-08 4.9E-13 80.1 14.6 103 101-203 144-252 (262)
163 KOG4340 Uncharacterized conser 99.0 3.2E-08 7E-13 79.7 15.1 182 36-227 23-265 (459)
164 COG0457 NrfG FOG: TPR repeat [ 99.0 2.6E-07 5.6E-12 73.9 21.0 169 63-234 94-267 (291)
165 PF13512 TPR_18: Tetratricopep 99.0 2.7E-08 5.9E-13 72.3 13.3 85 63-147 9-99 (142)
166 COG4785 NlpI Lipoprotein NlpI, 99.0 8.7E-08 1.9E-12 73.8 16.5 169 62-234 63-268 (297)
167 KOG1070 rRNA processing protei 99.0 5.8E-07 1.3E-11 85.6 24.9 182 63-251 1499-1683(1710)
168 PF12688 TPR_5: Tetratrico pep 99.0 3.3E-08 7.1E-13 70.7 12.9 96 133-231 2-103 (120)
169 COG0457 NrfG FOG: TPR repeat [ 98.9 9.1E-07 2E-11 70.7 22.3 182 64-249 59-247 (291)
170 PF13371 TPR_9: Tetratricopept 98.9 1E-08 2.2E-13 67.1 8.5 65 106-170 3-67 (73)
171 PF13512 TPR_18: Tetratricopep 98.9 8.1E-08 1.8E-12 69.8 13.6 104 97-200 9-133 (142)
172 COG4785 NlpI Lipoprotein NlpI, 98.9 1.6E-07 3.6E-12 72.3 15.7 149 97-253 64-212 (297)
173 KOG1915 Cell cycle control pro 98.9 1.4E-06 3.1E-11 74.6 22.6 183 64-251 73-255 (677)
174 KOG4648 Uncharacterized conser 98.9 1.2E-08 2.7E-13 83.5 9.0 109 101-209 100-208 (536)
175 KOG4234 TPR repeat-containing 98.9 5.9E-08 1.3E-12 73.8 11.8 105 103-207 100-209 (271)
176 KOG3081 Vesicle coat complex C 98.9 1.9E-06 4.2E-11 68.5 20.7 160 66-235 110-274 (299)
177 PF06552 TOM20_plant: Plant sp 98.9 5.5E-08 1.2E-12 73.0 11.5 94 114-207 7-121 (186)
178 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.6E-08 3.5E-13 86.7 9.5 70 127-196 70-142 (453)
179 COG1729 Uncharacterized protei 98.9 7.2E-08 1.5E-12 77.3 12.5 98 135-235 144-247 (262)
180 COG4700 Uncharacterized protei 98.8 1.4E-06 3E-11 65.7 17.9 149 77-230 69-220 (251)
181 PF14938 SNAP: Soluble NSF att 98.8 1.6E-07 3.6E-12 78.4 14.3 171 62-234 73-268 (282)
182 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.2E-08 6.9E-13 85.0 9.7 70 93-162 70-142 (453)
183 COG4105 ComL DNA uptake lipopr 98.8 1.2E-06 2.6E-11 69.8 17.7 155 96-253 32-219 (254)
184 PF06552 TOM20_plant: Plant sp 98.8 6.5E-08 1.4E-12 72.6 9.9 98 148-246 7-122 (186)
185 KOG2047 mRNA splicing factor [ 98.8 5.9E-06 1.3E-10 73.3 22.9 179 63-242 386-589 (835)
186 KOG3785 Uncharacterized conser 98.7 8.1E-07 1.8E-11 73.5 15.1 150 66-215 59-234 (557)
187 KOG2796 Uncharacterized conser 98.7 3.7E-06 8.1E-11 66.9 17.7 133 100-235 179-318 (366)
188 PF13424 TPR_12: Tetratricopep 98.7 3.1E-08 6.7E-13 65.7 5.4 62 167-231 6-74 (78)
189 COG4700 Uncharacterized protei 98.7 3.4E-06 7.3E-11 63.7 16.6 139 105-247 63-204 (251)
190 KOG1070 rRNA processing protei 98.7 6.4E-06 1.4E-10 78.8 22.2 182 60-246 1454-1642(1710)
191 KOG3081 Vesicle coat complex C 98.7 2.4E-05 5.3E-10 62.4 22.1 206 37-253 39-256 (299)
192 KOG2796 Uncharacterized conser 98.7 4.7E-06 1E-10 66.3 17.4 173 71-260 129-308 (366)
193 PRK04841 transcriptional regul 98.7 4.6E-06 1E-10 81.2 21.1 164 67-233 412-603 (903)
194 KOG1941 Acetylcholine receptor 98.7 7.9E-06 1.7E-10 67.9 18.8 191 63-256 82-304 (518)
195 PF13424 TPR_12: Tetratricopep 98.7 3.5E-08 7.5E-13 65.5 4.4 67 129-195 2-75 (78)
196 KOG2610 Uncharacterized conser 98.6 2.2E-06 4.7E-11 70.5 15.0 157 71-230 110-274 (491)
197 PF05843 Suf: Suppressor of fo 98.6 1.3E-06 2.9E-11 72.7 14.4 131 101-234 4-138 (280)
198 KOG1586 Protein required for f 98.6 4.4E-05 9.5E-10 59.8 20.7 218 62-282 32-279 (288)
199 KOG4555 TPR repeat-containing 98.6 2.7E-06 5.8E-11 60.3 12.4 92 104-195 49-144 (175)
200 KOG4555 TPR repeat-containing 98.6 4.5E-06 9.8E-11 59.2 13.0 101 135-239 46-150 (175)
201 PRK04841 transcriptional regul 98.6 8.2E-06 1.8E-10 79.5 19.8 167 65-234 453-643 (903)
202 PF13281 DUF4071: Domain of un 98.6 8.3E-05 1.8E-09 63.5 23.0 169 63-235 140-337 (374)
203 KOG4642 Chaperone-dependent E3 98.6 2.1E-07 4.5E-12 72.7 6.8 91 71-161 17-107 (284)
204 KOG2053 Mitochondrial inherita 98.6 4.4E-06 9.5E-11 76.7 16.1 137 74-211 19-155 (932)
205 PF13428 TPR_14: Tetratricopep 98.5 2.4E-07 5.2E-12 53.8 5.1 42 167-208 2-43 (44)
206 PF05843 Suf: Suppressor of fo 98.5 6.3E-06 1.4E-10 68.7 14.8 138 66-203 3-144 (280)
207 KOG4642 Chaperone-dependent E3 98.5 3.8E-07 8.3E-12 71.3 6.7 93 103-195 15-107 (284)
208 PF04184 ST7: ST7 protein; In 98.5 2.1E-05 4.5E-10 68.3 17.2 168 69-239 173-381 (539)
209 KOG2053 Mitochondrial inherita 98.5 2.6E-05 5.6E-10 71.8 18.5 173 110-292 21-194 (932)
210 PF13428 TPR_14: Tetratricopep 98.4 6.5E-07 1.4E-11 52.0 5.3 42 133-174 2-43 (44)
211 KOG2047 mRNA splicing factor [ 98.4 0.00018 4E-09 64.2 20.5 182 60-246 345-554 (835)
212 PF13281 DUF4071: Domain of un 98.3 0.00037 7.9E-09 59.6 21.3 197 5-207 121-346 (374)
213 KOG2610 Uncharacterized conser 98.3 0.00011 2.4E-09 60.7 17.1 152 102-256 107-265 (491)
214 KOG3617 WD40 and TPR repeat-co 98.3 0.0012 2.6E-08 60.9 25.1 181 36-228 839-1105(1416)
215 PF13431 TPR_17: Tetratricopep 98.3 8.1E-07 1.8E-11 48.2 3.1 31 155-185 2-32 (34)
216 KOG2471 TPR repeat-containing 98.3 7.3E-06 1.6E-10 70.6 10.3 144 71-214 213-383 (696)
217 KOG0376 Serine-threonine phosp 98.3 1.8E-06 4E-11 74.2 6.7 109 68-176 8-116 (476)
218 KOG1941 Acetylcholine receptor 98.3 3.4E-05 7.5E-10 64.2 13.4 211 36-253 19-261 (518)
219 KOG0376 Serine-threonine phosp 98.3 1.8E-06 3.9E-11 74.2 6.1 110 104-213 10-119 (476)
220 PF00515 TPR_1: Tetratricopept 98.2 2.6E-06 5.7E-11 46.3 4.4 32 167-198 2-33 (34)
221 COG3118 Thioredoxin domain-con 98.2 0.00018 3.9E-09 58.6 16.0 154 71-228 141-297 (304)
222 PF13431 TPR_17: Tetratricopep 98.2 2E-06 4.4E-11 46.7 3.2 33 188-223 1-33 (34)
223 PF07719 TPR_2: Tetratricopept 98.2 5.4E-06 1.2E-10 45.0 5.0 32 167-198 2-33 (34)
224 KOG0545 Aryl-hydrocarbon recep 98.2 4.9E-05 1.1E-09 60.0 11.8 67 166-235 230-296 (329)
225 KOG0545 Aryl-hydrocarbon recep 98.2 3.8E-05 8.3E-10 60.6 10.8 104 99-202 179-300 (329)
226 KOG1585 Protein required for f 98.1 0.00081 1.7E-08 53.3 17.7 167 63-232 30-219 (308)
227 PF10300 DUF3808: Protein of u 98.1 6E-05 1.3E-09 67.5 13.1 118 77-194 246-375 (468)
228 PF10300 DUF3808: Protein of u 98.1 0.00024 5.3E-09 63.6 17.0 154 77-233 201-377 (468)
229 KOG2471 TPR repeat-containing 98.1 3E-05 6.5E-10 67.0 9.8 145 105-253 213-384 (696)
230 KOG0551 Hsp90 co-chaperone CNS 98.0 8.3E-05 1.8E-09 61.3 10.8 97 135-234 84-184 (390)
231 COG3898 Uncharacterized membra 98.0 0.0022 4.7E-08 54.4 19.2 167 64-235 120-295 (531)
232 KOG1914 mRNA cleavage and poly 98.0 0.0012 2.6E-08 58.0 17.9 173 80-255 309-489 (656)
233 PF07719 TPR_2: Tetratricopept 97.9 3.3E-05 7.1E-10 41.8 5.0 33 133-165 2-34 (34)
234 PF03704 BTAD: Bacterial trans 97.9 0.00067 1.4E-08 50.7 13.4 112 105-232 13-125 (146)
235 KOG1586 Protein required for f 97.9 0.00095 2.1E-08 52.6 14.0 171 62-233 72-266 (288)
236 PF00515 TPR_1: Tetratricopept 97.9 3.4E-05 7.3E-10 41.8 4.4 33 200-235 1-33 (34)
237 PF03704 BTAD: Bacterial trans 97.9 0.00091 2E-08 50.0 13.7 116 67-194 9-124 (146)
238 KOG0551 Hsp90 co-chaperone CNS 97.8 9.7E-05 2.1E-09 60.9 8.3 97 100-196 83-183 (390)
239 KOG0530 Protein farnesyltransf 97.8 0.0094 2E-07 47.9 18.6 184 23-214 44-236 (318)
240 PF02259 FAT: FAT domain; Int 97.8 0.013 2.8E-07 50.6 21.7 150 128-281 142-337 (352)
241 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0037 8E-08 53.3 17.7 145 86-233 7-184 (321)
242 PF04184 ST7: ST7 protein; In 97.8 0.0023 5E-08 56.0 16.1 136 106-247 176-339 (539)
243 COG2976 Uncharacterized protei 97.8 0.0032 7E-08 48.3 14.8 95 136-234 93-190 (207)
244 KOG3617 WD40 and TPR repeat-co 97.8 0.0013 2.7E-08 60.8 14.7 164 64-232 757-996 (1416)
245 PF02259 FAT: FAT domain; Int 97.7 0.013 2.9E-07 50.5 20.7 189 38-235 124-341 (352)
246 KOG1308 Hsp70-interacting prot 97.7 1.2E-05 2.7E-10 66.3 1.6 92 105-196 121-212 (377)
247 PF13181 TPR_8: Tetratricopept 97.7 6.7E-05 1.5E-09 40.6 4.1 30 168-197 3-32 (34)
248 KOG1308 Hsp70-interacting prot 97.7 3.9E-05 8.5E-10 63.4 4.3 93 71-163 121-213 (377)
249 COG2976 Uncharacterized protei 97.7 0.0057 1.2E-07 47.0 15.3 128 71-200 60-193 (207)
250 PF04910 Tcf25: Transcriptiona 97.7 0.0052 1.1E-07 53.1 17.2 157 75-235 21-225 (360)
251 KOG2300 Uncharacterized conser 97.7 0.013 2.9E-07 51.1 19.1 168 65-235 324-517 (629)
252 KOG1585 Protein required for f 97.7 0.011 2.5E-07 47.0 17.3 186 100-288 33-246 (308)
253 COG3118 Thioredoxin domain-con 97.7 0.0058 1.3E-07 50.1 16.0 132 98-235 134-268 (304)
254 KOG4507 Uncharacterized conser 97.7 0.00022 4.8E-09 63.1 8.2 102 105-206 614-716 (886)
255 COG0790 FOG: TPR repeat, SEL1 97.6 0.016 3.4E-07 48.7 19.0 162 66-234 75-268 (292)
256 COG3898 Uncharacterized membra 97.6 0.032 7E-07 47.6 25.3 126 72-197 162-294 (531)
257 PRK15180 Vi polysaccharide bio 97.6 0.00072 1.6E-08 58.7 9.7 130 74-203 299-428 (831)
258 COG0790 FOG: TPR repeat, SEL1 97.5 0.042 9E-07 46.2 19.9 162 75-245 52-230 (292)
259 KOG0530 Protein farnesyltransf 97.5 0.021 4.6E-07 46.0 16.3 175 74-249 53-232 (318)
260 KOG2396 HAT (Half-A-TPR) repea 97.5 0.0025 5.3E-08 55.7 11.9 91 82-172 89-180 (568)
261 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0044 9.5E-08 46.3 11.7 86 63-148 9-94 (160)
262 KOG2396 HAT (Half-A-TPR) repea 97.5 0.0021 4.4E-08 56.2 11.1 91 116-206 89-180 (568)
263 PF09613 HrpB1_HrpK: Bacterial 97.4 0.012 2.6E-07 44.0 13.7 81 135-215 13-93 (160)
264 PF13181 TPR_8: Tetratricopept 97.4 0.00043 9.3E-09 37.3 4.5 30 134-163 3-32 (34)
265 PF14561 TPR_20: Tetratricopep 97.4 0.0027 5.9E-08 43.0 9.2 65 151-215 7-73 (90)
266 PF13176 TPR_7: Tetratricopept 97.4 0.00035 7.6E-09 38.3 3.9 25 169-193 2-26 (36)
267 PF13174 TPR_6: Tetratricopept 97.3 0.00062 1.3E-08 36.3 4.5 30 169-198 3-32 (33)
268 PF04910 Tcf25: Transcriptiona 97.3 0.051 1.1E-06 47.1 18.4 128 124-254 32-194 (360)
269 KOG1550 Extracellular protein 97.3 0.029 6.3E-07 51.6 17.9 147 80-234 228-395 (552)
270 PF04781 DUF627: Protein of un 97.3 0.0045 9.8E-08 43.0 9.5 45 151-195 63-107 (111)
271 PF07079 DUF1347: Protein of u 97.3 0.099 2.1E-06 45.6 21.1 74 173-253 469-545 (549)
272 PF08424 NRDE-2: NRDE-2, neces 97.3 0.044 9.6E-07 46.7 17.4 118 80-197 47-185 (321)
273 PF13174 TPR_6: Tetratricopept 97.3 0.0006 1.3E-08 36.4 3.9 31 134-164 2-32 (33)
274 PRK10941 hypothetical protein; 97.2 0.0074 1.6E-07 49.7 11.1 75 135-209 184-258 (269)
275 KOG1258 mRNA processing protei 97.2 0.17 3.7E-06 45.6 21.2 148 66-214 333-489 (577)
276 PRK10941 hypothetical protein; 97.2 0.0069 1.5E-07 49.9 10.8 65 168-235 183-247 (269)
277 PF04781 DUF627: Protein of un 97.1 0.01 2.3E-07 41.2 9.5 105 105-232 3-107 (111)
278 KOG0529 Protein geranylgeranyl 97.1 0.088 1.9E-06 45.3 16.9 164 36-206 42-235 (421)
279 TIGR02561 HrpB1_HrpK type III 97.1 0.017 3.6E-07 42.5 10.9 86 63-148 9-94 (153)
280 KOG1550 Extracellular protein 97.0 0.13 2.9E-06 47.4 19.0 159 64-231 244-425 (552)
281 KOG1258 mRNA processing protei 97.0 0.24 5.2E-06 44.7 20.5 183 57-243 290-480 (577)
282 PF13176 TPR_7: Tetratricopept 97.0 0.0018 3.9E-08 35.5 4.3 25 135-159 2-26 (36)
283 KOG4507 Uncharacterized conser 97.0 0.0069 1.5E-07 54.0 9.9 132 119-253 200-335 (886)
284 smart00028 TPR Tetratricopepti 97.0 0.0016 3.4E-08 33.9 3.9 30 168-197 3-32 (34)
285 PRK15180 Vi polysaccharide bio 96.9 0.0065 1.4E-07 53.0 8.7 129 110-242 301-429 (831)
286 KOG3824 Huntingtin interacting 96.9 0.005 1.1E-07 50.6 7.5 65 142-206 126-190 (472)
287 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0075 1.6E-07 36.1 6.4 34 169-202 4-37 (53)
288 PF14561 TPR_20: Tetratricopep 96.9 0.025 5.3E-07 38.3 9.8 64 84-147 8-73 (90)
289 COG5191 Uncharacterized conser 96.9 0.0026 5.7E-08 52.3 5.7 85 87-171 96-181 (435)
290 KOG3824 Huntingtin interacting 96.9 0.006 1.3E-07 50.2 7.7 69 173-245 123-191 (472)
291 COG2909 MalT ATP-dependent tra 96.8 0.22 4.7E-06 47.1 18.4 117 64-180 415-551 (894)
292 COG3914 Spy Predicted O-linked 96.8 0.11 2.4E-06 46.7 15.8 101 105-205 74-181 (620)
293 TIGR02561 HrpB1_HrpK type III 96.7 0.035 7.5E-07 40.9 10.0 76 140-215 18-93 (153)
294 COG5191 Uncharacterized conser 96.6 0.0039 8.4E-08 51.3 4.9 87 120-206 95-182 (435)
295 PF14853 Fis1_TPR_C: Fis1 C-te 96.6 0.017 3.6E-07 34.6 6.3 40 67-106 4-43 (53)
296 PF08631 SPO22: Meiosis protei 96.6 0.37 7.9E-06 40.3 21.9 175 74-253 3-207 (278)
297 KOG1839 Uncharacterized protei 96.5 0.058 1.3E-06 52.8 12.6 164 66-232 934-1128(1236)
298 KOG0985 Vesicle coat protein c 96.5 0.57 1.2E-05 45.3 18.4 171 63-251 1103-1326(1666)
299 KOG2422 Uncharacterized conser 96.4 0.66 1.4E-05 41.9 17.9 157 78-235 252-451 (665)
300 COG4976 Predicted methyltransf 96.4 0.0081 1.8E-07 47.4 5.4 58 142-199 5-62 (287)
301 COG4976 Predicted methyltransf 96.4 0.0061 1.3E-07 48.0 4.7 60 107-166 4-63 (287)
302 smart00028 TPR Tetratricopepti 96.4 0.0067 1.4E-07 31.4 3.6 30 134-163 3-32 (34)
303 KOG2300 Uncharacterized conser 96.3 0.69 1.5E-05 40.9 20.8 204 76-285 287-540 (629)
304 PF12968 DUF3856: Domain of Un 96.2 0.27 5.8E-06 34.8 12.0 62 168-232 57-129 (144)
305 PF12968 DUF3856: Domain of Un 96.1 0.13 2.8E-06 36.3 9.4 84 111-194 22-128 (144)
306 COG3914 Spy Predicted O-linked 96.0 0.32 7E-06 43.9 14.0 113 70-182 73-192 (620)
307 PF10345 Cohesin_load: Cohesin 96.0 1.3 2.9E-05 41.4 20.5 80 82-162 39-129 (608)
308 PF09986 DUF2225: Uncharacteri 96.0 0.1 2.2E-06 41.6 10.1 83 112-194 91-193 (214)
309 KOG1310 WD40 repeat protein [G 96.0 0.034 7.3E-07 49.3 7.7 89 77-165 387-478 (758)
310 PF10602 RPN7: 26S proteasome 95.9 0.16 3.5E-06 39.2 10.6 97 133-232 37-142 (177)
311 KOG1310 WD40 repeat protein [G 95.9 0.029 6.4E-07 49.6 7.1 90 111-200 387-479 (758)
312 PF10602 RPN7: 26S proteasome 95.9 0.18 3.9E-06 38.9 10.8 95 100-194 38-141 (177)
313 KOG3364 Membrane protein invol 95.8 0.1 2.2E-06 37.7 8.3 70 66-135 34-108 (149)
314 PRK13184 pknD serine/threonine 95.8 2.2 4.8E-05 41.7 19.4 175 72-253 483-703 (932)
315 PF13374 TPR_10: Tetratricopep 95.7 0.03 6.5E-07 31.3 4.5 29 167-195 3-31 (42)
316 COG4649 Uncharacterized protei 95.7 0.64 1.4E-05 35.4 15.2 119 75-193 69-194 (221)
317 KOG0985 Vesicle coat protein c 95.7 2 4.3E-05 41.8 18.1 132 96-249 1102-1260(1666)
318 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1.1 2.3E-05 39.5 15.2 87 144-233 409-496 (660)
319 KOG3364 Membrane protein invol 95.6 0.6 1.3E-05 33.9 11.3 70 134-203 34-108 (149)
320 KOG4814 Uncharacterized conser 95.5 0.17 3.8E-06 46.0 10.4 91 104-194 360-456 (872)
321 PF08631 SPO22: Meiosis protei 95.5 1.2 2.6E-05 37.2 19.7 122 109-233 4-151 (278)
322 PF09986 DUF2225: Uncharacteri 95.5 0.18 4E-06 40.2 9.6 28 134-161 167-194 (214)
323 KOG4814 Uncharacterized conser 95.4 0.28 6.1E-06 44.7 11.3 95 135-232 357-457 (872)
324 PF10345 Cohesin_load: Cohesin 95.3 2.5 5.5E-05 39.7 19.2 150 43-193 37-206 (608)
325 COG5107 RNA14 Pre-mRNA 3'-end 95.3 0.89 1.9E-05 40.0 13.4 162 85-253 289-481 (660)
326 COG2912 Uncharacterized conser 95.3 0.27 5.8E-06 40.2 9.9 62 141-202 190-251 (269)
327 PF07079 DUF1347: Protein of u 95.3 0.91 2E-05 39.9 13.4 128 102-232 10-157 (549)
328 KOG1914 mRNA cleavage and poly 95.2 2.3 4.9E-05 38.4 19.7 71 89-160 11-81 (656)
329 COG2909 MalT ATP-dependent tra 95.2 3.1 6.6E-05 39.8 22.8 167 66-235 460-650 (894)
330 PF07720 TPR_3: Tetratricopept 95.0 0.12 2.5E-06 28.2 4.9 30 168-197 3-34 (36)
331 PF04053 Coatomer_WDAD: Coatom 94.9 0.69 1.5E-05 41.3 12.4 129 74-230 271-400 (443)
332 PF13374 TPR_10: Tetratricopep 94.8 0.089 1.9E-06 29.3 4.6 30 133-162 3-32 (42)
333 COG2912 Uncharacterized conser 94.8 0.32 7E-06 39.8 9.1 69 102-170 185-253 (269)
334 PRK13184 pknD serine/threonine 94.8 0.25 5.4E-06 48.0 9.7 98 105-203 482-589 (932)
335 KOG2581 26S proteasome regulat 94.6 2.1 4.5E-05 37.1 13.7 130 71-200 133-281 (493)
336 PF12862 Apc5: Anaphase-promot 94.6 0.31 6.7E-06 33.2 7.5 31 201-234 42-72 (94)
337 PF15015 NYD-SP12_N: Spermatog 94.5 0.34 7.3E-06 42.0 8.9 57 135-191 231-287 (569)
338 PF15015 NYD-SP12_N: Spermatog 94.5 0.25 5.5E-06 42.7 8.1 58 170-230 232-289 (569)
339 PF12862 Apc5: Anaphase-promot 94.5 0.5 1.1E-05 32.2 8.3 27 135-161 44-70 (94)
340 KOG2422 Uncharacterized conser 94.4 3.8 8.2E-05 37.3 15.7 137 60-197 280-450 (665)
341 KOG2041 WD40 repeat protein [G 94.4 1.3 2.7E-05 41.2 12.6 153 64-228 692-877 (1189)
342 PF10373 EST1_DNA_bind: Est1 D 94.3 1.4 2.9E-05 36.6 12.3 62 151-212 1-62 (278)
343 KOG3807 Predicted membrane pro 94.2 3.1 6.6E-05 35.2 16.4 165 69-235 189-394 (556)
344 PF11207 DUF2989: Protein of u 93.9 0.97 2.1E-05 35.3 9.6 73 113-186 121-198 (203)
345 COG3629 DnrI DNA-binding trans 93.9 0.87 1.9E-05 37.7 9.9 63 166-231 153-215 (280)
346 COG4649 Uncharacterized protei 93.8 2.3 5E-05 32.5 16.1 121 108-231 68-195 (221)
347 KOG1839 Uncharacterized protei 93.8 0.74 1.6E-05 45.5 10.6 138 57-194 966-1127(1236)
348 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.14 3E-06 28.3 3.5 28 168-195 3-30 (38)
349 COG1747 Uncharacterized N-term 93.7 5 0.00011 36.1 20.7 159 74-235 76-291 (711)
350 KOG0890 Protein kinase of the 93.7 11 0.00025 40.2 22.7 153 58-212 1664-1858(2382)
351 COG3629 DnrI DNA-binding trans 93.6 0.98 2.1E-05 37.4 9.8 62 133-194 154-215 (280)
352 PF04053 Coatomer_WDAD: Coatom 93.6 5.2 0.00011 35.8 15.8 131 67-229 298-428 (443)
353 KOG0890 Protein kinase of the 93.6 3.5 7.6E-05 43.7 15.2 170 60-234 1628-1835(2382)
354 COG5536 BET4 Protein prenyltra 93.5 3.7 8E-05 33.8 14.0 183 36-228 45-256 (328)
355 COG4941 Predicted RNA polymera 93.5 4.3 9.2E-05 34.4 15.1 152 80-235 212-397 (415)
356 KOG0529 Protein geranylgeranyl 93.3 5 0.00011 34.9 17.2 166 76-242 40-233 (421)
357 PF10373 EST1_DNA_bind: Est1 D 93.3 0.43 9.2E-06 39.7 7.6 62 117-178 1-62 (278)
358 PF07721 TPR_4: Tetratricopept 93.3 0.12 2.7E-06 25.7 2.6 17 171-187 6-22 (26)
359 COG3947 Response regulator con 93.3 1.5 3.3E-05 36.3 10.0 57 102-158 283-339 (361)
360 PF10255 Paf67: RNA polymerase 93.1 5.8 0.00013 34.9 15.2 102 60-161 69-193 (404)
361 KOG3616 Selective LIM binding 93.1 1.5 3.3E-05 41.0 10.9 145 69-226 666-847 (1636)
362 KOG4014 Uncharacterized conser 93.0 3.3 7.1E-05 32.0 13.5 148 77-232 48-233 (248)
363 PF10579 Rapsyn_N: Rapsyn N-te 92.9 1.3 2.9E-05 28.8 7.5 48 142-189 16-66 (80)
364 KOG3807 Predicted membrane pro 92.8 3.1 6.6E-05 35.3 11.3 119 105-228 191-336 (556)
365 PF10579 Rapsyn_N: Rapsyn N-te 92.4 0.9 1.9E-05 29.6 6.3 59 171-232 11-72 (80)
366 PF07720 TPR_3: Tetratricopept 92.1 0.73 1.6E-05 25.0 4.9 21 134-154 3-23 (36)
367 smart00386 HAT HAT (Half-A-TPR 91.9 0.52 1.1E-05 24.3 4.2 22 149-170 4-25 (33)
368 PF07721 TPR_4: Tetratricopept 91.7 0.31 6.7E-06 24.2 2.9 25 201-228 2-26 (26)
369 COG3947 Response regulator con 91.7 0.96 2.1E-05 37.4 7.1 58 170-230 283-340 (361)
370 PF11817 Foie-gras_1: Foie gra 91.6 2.8 6.1E-05 34.3 10.1 80 147-229 153-244 (247)
371 KOG4014 Uncharacterized conser 91.4 5.5 0.00012 30.8 15.0 133 96-233 32-198 (248)
372 KOG1463 26S proteasome regulat 91.3 8.4 0.00018 32.8 13.5 171 69-242 133-324 (411)
373 PF10516 SHNi-TPR: SHNi-TPR; 91.0 0.48 1E-05 26.1 3.5 31 201-234 2-32 (38)
374 PF09670 Cas_Cas02710: CRISPR- 91.0 5.8 0.00013 34.8 12.0 60 69-128 136-199 (379)
375 smart00386 HAT HAT (Half-A-TPR 91.0 0.76 1.6E-05 23.6 4.3 30 180-209 1-30 (33)
376 KOG1464 COP9 signalosome, subu 90.7 8.4 0.00018 31.8 14.0 52 75-126 38-93 (440)
377 COG5536 BET4 Protein prenyltra 90.2 6.5 0.00014 32.5 10.5 164 81-245 49-234 (328)
378 PF10255 Paf67: RNA polymerase 89.7 0.84 1.8E-05 40.0 5.6 59 135-193 125-191 (404)
379 KOG2041 WD40 repeat protein [G 89.6 12 0.00027 35.1 12.8 30 162-191 848-877 (1189)
380 KOG3616 Selective LIM binding 89.5 4.7 0.0001 38.0 10.2 120 101-233 768-912 (1636)
381 COG1747 Uncharacterized N-term 89.5 16 0.00035 33.1 14.9 135 64-200 99-293 (711)
382 PF00244 14-3-3: 14-3-3 protei 88.6 12 0.00025 30.5 13.3 162 67-232 4-198 (236)
383 PF13226 DUF4034: Domain of un 87.7 15 0.00032 30.6 11.5 34 182-215 115-148 (277)
384 PF04190 DUF410: Protein of un 87.1 16 0.00034 30.2 18.4 189 63-252 9-242 (260)
385 KOG4279 Serine/threonine prote 87.0 10 0.00022 35.9 10.8 168 63-235 200-398 (1226)
386 PF12854 PPR_1: PPR repeat 87.0 1.8 3.8E-05 23.0 3.9 26 132-157 7-32 (34)
387 PF11817 Foie-gras_1: Foie gra 86.9 6.8 0.00015 32.1 9.0 81 113-193 153-245 (247)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 86.9 9.6 0.00021 27.5 12.5 107 119-230 6-126 (126)
389 PF12854 PPR_1: PPR repeat 86.8 2.1 4.5E-05 22.7 4.1 27 165-191 6-32 (34)
390 KOG0546 HSP90 co-chaperone CPR 86.5 1.5 3.2E-05 37.3 4.9 70 137-206 280-349 (372)
391 PF13041 PPR_2: PPR repeat fam 86.2 4.8 0.0001 23.3 6.3 27 168-194 5-31 (50)
392 PF09797 NatB_MDM20: N-acetylt 86.2 5.7 0.00012 34.6 8.7 41 116-156 201-241 (365)
393 TIGR03504 FimV_Cterm FimV C-te 85.6 2.1 4.6E-05 24.4 3.8 25 170-194 3-27 (44)
394 KOG3783 Uncharacterized conser 85.4 15 0.00032 33.4 10.6 91 81-173 250-344 (546)
395 PF09670 Cas_Cas02710: CRISPR- 85.4 25 0.00054 30.9 12.2 60 102-161 135-198 (379)
396 KOG2581 26S proteasome regulat 85.1 26 0.00056 30.8 15.5 125 108-235 136-279 (493)
397 KOG0128 RNA-binding protein SA 84.9 38 0.00082 32.6 13.5 120 112-232 93-219 (881)
398 PF11207 DUF2989: Protein of u 84.9 17 0.00037 28.6 15.6 71 149-223 123-198 (203)
399 KOG0686 COP9 signalosome, subu 84.4 13 0.00029 32.5 9.6 96 63-158 149-255 (466)
400 KOG1538 Uncharacterized conser 84.4 23 0.0005 33.1 11.5 112 105-230 710-831 (1081)
401 KOG2114 Vacuolar assembly/sort 84.2 14 0.00031 35.3 10.4 52 74-126 344-396 (933)
402 KOG0687 26S proteasome regulat 84.2 20 0.00044 30.4 10.3 99 97-195 103-210 (393)
403 PF13041 PPR_2: PPR repeat fam 83.8 6.4 0.00014 22.8 6.1 30 132-161 3-32 (50)
404 COG4455 ImpE Protein of avirul 83.6 21 0.00046 28.6 13.0 58 108-165 11-68 (273)
405 COG4455 ImpE Protein of avirul 83.5 7.1 0.00015 31.2 7.0 61 140-200 9-69 (273)
406 TIGR03504 FimV_Cterm FimV C-te 83.3 3.2 6.9E-05 23.7 3.9 22 104-125 5-26 (44)
407 KOG4279 Serine/threonine prote 82.8 15 0.00032 34.9 9.8 134 77-211 256-411 (1226)
408 PF14863 Alkyl_sulf_dimr: Alky 82.7 5.6 0.00012 29.4 6.1 45 68-112 74-118 (141)
409 PF14863 Alkyl_sulf_dimr: Alky 82.0 8.5 0.00018 28.4 6.7 50 166-215 70-119 (141)
410 PHA02537 M terminase endonucle 81.6 4.3 9.4E-05 32.7 5.5 34 202-235 171-210 (230)
411 PF04190 DUF410: Protein of un 81.1 30 0.00065 28.6 16.0 140 76-232 2-170 (260)
412 PF01535 PPR: PPR repeat; Int 80.3 3.4 7.4E-05 20.7 3.2 23 170-192 4-26 (31)
413 PF12739 TRAPPC-Trs85: ER-Golg 78.9 47 0.001 29.6 15.8 153 65-234 209-401 (414)
414 KOG0276 Vesicle coat complex C 78.9 20 0.00043 33.2 9.1 98 75-194 597-694 (794)
415 PF09797 NatB_MDM20: N-acetylt 78.8 16 0.00036 31.8 8.7 68 125-192 170-243 (365)
416 COG5187 RPN7 26S proteasome re 78.2 40 0.00086 28.3 10.8 99 98-196 115-222 (412)
417 PF10952 DUF2753: Protein of u 77.8 23 0.0005 25.4 7.5 59 169-230 4-77 (140)
418 KOG0546 HSP90 co-chaperone CPR 76.1 2.5 5.4E-05 36.0 2.7 75 102-176 279-353 (372)
419 TIGR00756 PPR pentatricopeptid 75.5 7.6 0.00017 19.8 3.8 25 169-193 3-27 (35)
420 cd02682 MIT_AAA_Arch MIT: doma 75.3 14 0.00031 23.9 5.5 11 192-202 39-49 (75)
421 PF09205 DUF1955: Domain of un 74.1 29 0.00062 25.5 7.2 30 72-101 10-39 (161)
422 PHA02537 M terminase endonucle 74.0 6.7 0.00015 31.6 4.5 22 178-199 190-211 (230)
423 PF11846 DUF3366: Domain of un 73.9 15 0.00033 28.6 6.6 45 152-197 131-175 (193)
424 KOG2758 Translation initiation 73.2 58 0.0013 27.8 21.0 171 57-232 122-317 (432)
425 KOG2114 Vacuolar assembly/sort 72.9 76 0.0016 30.8 11.4 31 62-92 366-396 (933)
426 COG5159 RPN6 26S proteasome re 72.7 57 0.0012 27.4 14.8 171 69-242 130-322 (421)
427 cd02681 MIT_calpain7_1 MIT: do 72.3 10 0.00022 24.6 4.3 17 178-194 18-34 (76)
428 cd02682 MIT_AAA_Arch MIT: doma 71.9 24 0.00052 22.8 7.5 21 104-124 12-32 (75)
429 PF13812 PPR_3: Pentatricopept 71.3 12 0.00026 19.1 4.4 27 66-92 3-29 (34)
430 PF13226 DUF4034: Domain of un 71.2 60 0.0013 27.1 10.5 112 72-183 8-150 (277)
431 cd02680 MIT_calpain7_2 MIT: do 71.1 11 0.00025 24.3 4.3 14 180-193 20-33 (75)
432 cd00280 TRFH Telomeric Repeat 71.0 47 0.001 25.8 13.8 115 28-145 21-157 (200)
433 KOG4151 Myosin assembly protei 70.9 16 0.00036 34.6 6.8 98 105-202 60-163 (748)
434 cd02680 MIT_calpain7_2 MIT: do 70.8 9.8 0.00021 24.6 3.9 18 144-161 18-35 (75)
435 PF12753 Nro1: Nuclear pore co 70.7 9.3 0.0002 33.3 4.9 54 180-235 332-394 (404)
436 PF11846 DUF3366: Domain of un 70.6 23 0.00049 27.6 6.9 49 183-235 128-176 (193)
437 PF09477 Type_III_YscG: Bacter 70.2 34 0.00075 23.9 11.5 87 66-157 8-94 (116)
438 cd00280 TRFH Telomeric Repeat 69.5 36 0.00078 26.4 7.2 69 40-109 86-155 (200)
439 smart00299 CLH Clathrin heavy 69.3 41 0.00089 24.4 15.0 47 75-122 18-64 (140)
440 PF12739 TRAPPC-Trs85: ER-Golg 68.5 87 0.0019 27.9 11.4 95 134-232 210-329 (414)
441 PRK15490 Vi polysaccharide bio 68.2 1E+02 0.0023 28.7 13.0 78 145-227 21-98 (578)
442 COG4259 Uncharacterized protei 68.0 37 0.0008 23.4 6.3 37 132-168 72-108 (121)
443 KOG1497 COP9 signalosome, subu 67.6 78 0.0017 27.0 10.4 94 99-193 104-211 (399)
444 COG5600 Transcription-associat 67.4 57 0.0012 28.4 8.7 83 46-130 157-252 (413)
445 COG4941 Predicted RNA polymera 67.3 82 0.0018 27.1 14.3 127 80-207 272-406 (415)
446 COG5159 RPN6 26S proteasome re 66.2 79 0.0017 26.6 13.0 159 69-230 8-192 (421)
447 PF14852 Fis1_TPR_N: Fis1 N-te 65.1 14 0.00031 19.8 3.3 32 202-233 3-34 (35)
448 PF08238 Sel1: Sel1 repeat; I 64.3 20 0.00043 19.1 4.0 15 218-232 23-37 (39)
449 PF02184 HAT: HAT (Half-A-TPR) 64.2 19 0.0004 19.0 3.4 14 183-196 4-17 (32)
450 PF04090 RNA_pol_I_TF: RNA pol 64.1 70 0.0015 25.2 10.6 66 63-128 40-106 (199)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 64.0 52 0.0011 23.7 12.7 43 116-158 81-125 (126)
452 KOG3677 RNA polymerase I-assoc 63.7 1.1E+02 0.0023 27.2 11.1 56 135-194 238-300 (525)
453 KOG0276 Vesicle coat complex C 62.6 1.4E+02 0.003 28.1 12.5 106 106-232 645-750 (794)
454 PRK15490 Vi polysaccharide bio 62.5 72 0.0016 29.7 9.1 78 77-156 21-98 (578)
455 TIGR02710 CRISPR-associated pr 62.4 1.1E+02 0.0024 26.9 12.5 54 70-123 136-196 (380)
456 KOG2561 Adaptor protein NUB1, 62.3 48 0.001 29.5 7.5 95 67-161 166-296 (568)
457 smart00671 SEL1 Sel1-like repe 62.3 20 0.00043 18.6 3.7 13 219-231 21-33 (36)
458 PF07219 HemY_N: HemY protein 62.2 51 0.0011 23.0 6.8 44 171-214 64-107 (108)
459 cd02677 MIT_SNX15 MIT: domain 61.7 16 0.00035 23.6 3.7 14 180-193 20-33 (75)
460 PF04840 Vps16_C: Vps16, C-ter 61.4 1.1E+02 0.0023 26.3 10.5 99 108-226 187-285 (319)
461 PF09205 DUF1955: Domain of un 61.1 64 0.0014 23.7 14.7 50 144-193 98-147 (161)
462 PF07219 HemY_N: HemY protein 61.0 34 0.00073 23.8 5.5 23 71-93 66-88 (108)
463 PF02064 MAS20: MAS20 protein 60.4 27 0.00058 25.1 4.9 28 171-198 68-95 (121)
464 PF04090 RNA_pol_I_TF: RNA pol 60.3 83 0.0018 24.8 10.7 59 105-163 48-107 (199)
465 PF02064 MAS20: MAS20 protein 59.9 55 0.0012 23.5 6.4 30 203-235 66-95 (121)
466 PF14929 TAF1_subA: TAF RNA Po 58.4 1.6E+02 0.0034 27.4 16.9 167 79-253 273-470 (547)
467 cd02684 MIT_2 MIT: domain cont 58.0 28 0.0006 22.5 4.3 14 180-193 20-33 (75)
468 KOG4151 Myosin assembly protei 56.9 68 0.0015 30.7 8.1 103 139-245 60-168 (748)
469 KOG0686 COP9 signalosome, subu 56.3 1.5E+02 0.0032 26.4 17.1 94 134-230 152-256 (466)
470 PF04212 MIT: MIT (microtubule 54.2 41 0.00088 21.1 4.6 14 179-192 18-31 (69)
471 KOG0128 RNA-binding protein SA 53.2 2.3E+02 0.0049 27.7 19.4 136 60-196 109-261 (881)
472 KOG2063 Vacuolar assembly/sort 51.9 2.5E+02 0.0055 27.8 15.7 163 66-231 506-712 (877)
473 PF05053 Menin: Menin; InterP 51.4 1.1E+02 0.0024 28.4 8.1 45 149-193 296-345 (618)
474 PF15469 Sec5: Exocyst complex 51.4 1.1E+02 0.0024 23.5 7.9 18 109-126 97-114 (182)
475 smart00299 CLH Clathrin heavy 51.1 91 0.002 22.5 12.6 105 108-228 17-121 (140)
476 cd02683 MIT_1 MIT: domain cont 50.4 68 0.0015 20.8 6.5 13 180-192 20-32 (77)
477 PF14689 SPOB_a: Sensor_kinase 50.1 59 0.0013 20.0 4.7 28 166-193 23-50 (62)
478 KOG3677 RNA polymerase I-assoc 49.8 1.9E+02 0.0041 25.8 11.5 101 105-209 242-352 (525)
479 KOG2561 Adaptor protein NUB1, 49.4 1.1E+02 0.0025 27.3 7.7 93 136-231 167-295 (568)
480 PF15297 CKAP2_C: Cytoskeleton 49.0 60 0.0013 28.0 5.9 49 82-130 121-172 (353)
481 PF04212 MIT: MIT (microtubule 48.8 46 0.001 20.8 4.2 25 205-232 10-34 (69)
482 COG5600 Transcription-associat 48.6 71 0.0015 27.8 6.3 63 136-198 181-252 (413)
483 cd02683 MIT_1 MIT: domain cont 47.5 51 0.0011 21.4 4.3 8 185-192 6-13 (77)
484 KOG2063 Vacuolar assembly/sort 46.8 2.9E+02 0.0062 27.5 10.7 111 101-211 507-637 (877)
485 cd02681 MIT_calpain7_1 MIT: do 45.7 39 0.00085 21.9 3.5 25 205-232 11-35 (76)
486 TIGR02710 CRISPR-associated pr 45.6 2.1E+02 0.0046 25.2 12.8 54 104-157 136-196 (380)
487 KOG3783 Uncharacterized conser 45.6 2.5E+02 0.0054 25.9 22.2 206 22-235 266-523 (546)
488 PF12583 TPPII_N: Tripeptidyl 45.6 1E+02 0.0023 22.4 5.8 32 143-174 87-118 (139)
489 KOG0687 26S proteasome regulat 45.5 2E+02 0.0043 24.8 13.7 102 131-235 103-213 (393)
490 PF05053 Menin: Menin; InterP 45.3 2.6E+02 0.0056 26.1 11.3 86 63-160 256-346 (618)
491 PF10952 DUF2753: Protein of u 45.1 1.2E+02 0.0025 22.0 7.1 34 167-200 51-88 (140)
492 PF00244 14-3-3: 14-3-3 protei 45.1 1.7E+02 0.0036 23.8 13.2 177 101-283 4-203 (236)
493 KOG4056 Translocase of outer m 44.8 1.2E+02 0.0027 22.2 6.5 29 204-235 85-113 (143)
494 PRK10564 maltose regulon perip 44.4 1.1E+02 0.0025 25.8 6.8 47 57-103 250-296 (303)
495 KOG1920 IkappaB kinase complex 42.0 4.1E+02 0.0088 27.4 14.7 57 172-231 958-1027(1265)
496 PF10037 MRP-S27: Mitochondria 41.9 2.6E+02 0.0057 25.1 11.9 89 105-195 73-167 (429)
497 KOG1538 Uncharacterized conser 41.6 3.2E+02 0.007 26.1 14.6 88 67-157 588-695 (1081)
498 smart00101 14_3_3 14-3-3 homol 40.4 2.1E+02 0.0045 23.5 17.5 159 69-231 6-199 (244)
499 TIGR02508 type_III_yscG type I 40.1 1.3E+02 0.0027 21.0 8.6 74 78-156 19-92 (115)
500 KOG0292 Vesicle coat complex C 39.7 4E+02 0.0086 26.6 10.9 29 67-95 994-1022(1202)
No 1
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.8e-36 Score=230.48 Aligned_cols=286 Identities=49% Similarity=0.773 Sum_probs=268.8
Q ss_pred CcchhHHHHHhHHHhhhhcCCccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCCh
Q 022205 1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCL 80 (301)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 80 (301)
|||+.+.-..++++.+.+ .||+...++++++++++..++...... .++|+.|.++.++.++.+..|+.
T Consensus 1 ~~t~~~~~~~~~l~~~~~-----------~wr~~~~rnseevv~l~~~~~~~~k~~-~~g~e~w~l~EqV~IAAld~~~~ 68 (289)
T KOG3060|consen 1 MVTELEDVSWEELRDQMR-----------KWREETVRNSEEVVQLGSEVLNYSKSG-ALGDEIWTLYEQVFIAALDTGRD 68 (289)
T ss_pred CcchHHHHHHHHHHHHHH-----------HHHhccccCHHHHHHHHHHHHHHhhhc-ccCchHHHHHHHHHHHHHHhcch
Confidence 789999999998888644 789999999999999999999773333 68999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
+.|..+++++.+.+|++.++..+.|..+...|++++|+++|+..++.+|.+..++.+...+...+|+..+|++.+...++
T Consensus 69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (301)
Q Consensus 161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (301)
.+++|+++|..++.+|+..|+|++|.-|+++++-+.|.++..+..+|.+++-.|-.+|+.-|.++|.++++++|. +.++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ra 227 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRA 227 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHH
Confidence 999999999999999999999999999999999999999999999999999999888899999999999999995 9999
Q ss_pred hhhHHHHHHHHHhhhccCCccccc--chHHHHHHHHHHHHHHHhhCChhhhHHHHHHhhccC
Q 022205 241 LFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAPAKLLLLTSALKSLKT 300 (301)
Q Consensus 241 ~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 300 (301)
++|+.+|...+.+..++..+.+++ ..++.+++...+.++| +..+.+..-|...+..+||
T Consensus 228 l~GI~lc~~~la~~sk~~~k~~K~~a~~~l~~~aas~l~r~~-q~s~~~~d~i~~~l~~lKi 288 (289)
T KOG3060|consen 228 LFGIYLCGSALAQISKAELKRKKDVAAPDLISLAASQLERIS-QKSKNKLDLITAALENLKI 288 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHhHHHHHHHHH-HhccchhhHHHHHHHHhcc
Confidence 999999999999999988888888 8999999999999999 6666777778888888876
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2e-27 Score=204.05 Aligned_cols=227 Identities=18% Similarity=0.160 Sum_probs=209.5
Q ss_pred CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205 55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (301)
Q Consensus 55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 134 (301)
++.+++|....+|.++|.++-..+.++.|+.++.+++...|.++.++-.+|.+|..+|..+-|+..|+++++..|..+++
T Consensus 243 eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 243 EAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred HhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
+.++|..+...|+..+|..+|++++.++|+++++.++||.+|..+|.++.|...|.++++..|....++.++|.+|..+|
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--chHHHHHHHHHHHHHHHhhCC
Q 022205 215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 285 (301)
+ +++|+.+|+.+++++|. ...++.+++..+..+++...+.....+. ++.-...|-.+|.-+|+..|+
T Consensus 403 n---l~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 403 N---LDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred c---HHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 9 99999999999999995 9999999999999999877666555544 344455566678889988877
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5.5e-25 Score=189.20 Aligned_cols=193 Identities=23% Similarity=0.261 Sum_probs=173.5
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
..+.|..+.+|.++|.++-+.|+..+|..++.+++...|..+++...+|.++..+|.+++|...|.+++...|....++.
T Consensus 313 l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 313 LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 34478888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 216 (301)
++|.+|..+|++++|+.+|++++++.|..++++.++|..|-.+|+.+.|+.+|.+++.++|...+++.++|.+|...|+
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn- 471 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN- 471 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
..+|+..|+.+++++|+ ...++-++..|...+.+
T Consensus 472 --i~~AI~sY~~aLklkPD-fpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 472 --IPEAIQSYRTALKLKPD-FPDAYCNLLHCLQIVCD 505 (966)
T ss_pred --cHHHHHHHHHHHccCCC-CchhhhHHHHHHHHHhc
Confidence 99999999999999996 88888888888887776
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.4e-21 Score=180.42 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=163.5
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
.++.++++......+.. +|.....|..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 344 ~g~~~eA~~~~~kal~l-------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 344 KGKHLEALADLSKSIEL-------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred cCCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 44555555555555544 66777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
+|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++.+
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHH------HHHHHHHHH-HcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 196 QPTVPLY------HLAYADVLY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 196 ~p~~~~~------~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
+|.+... +...+.+++ ..|+ +++|...|++++.++|+ +..++..++.++...|+...+.
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 7764322 222233333 3577 88888888888888885 7777788888888777755443
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2e-21 Score=179.26 Aligned_cols=174 Identities=14% Similarity=-0.002 Sum_probs=169.4
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
..|....++..+|.+++..|++++|+..+++++..+|++...+..+|.++...|++++|+..|++++..+|+++.++..+
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 405 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR 405 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 218 (301)
|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--- 482 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK--- 482 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 022205 219 ILLAKKYYASTIDLTGG 235 (301)
Q Consensus 219 ~~~A~~~~~~al~~~p~ 235 (301)
+++|+..|++++.++|.
T Consensus 483 ~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHHHhcCCc
Confidence 99999999999999985
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.8e-23 Score=181.42 Aligned_cols=194 Identities=16% Similarity=0.085 Sum_probs=187.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+|..+..|..+|.++--+++++.|+++|+++++++|....++.++|.-+.....++.|..+|++++..+|.+-.+|+.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 77778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.+++ +
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~---~ 573 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR---Y 573 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG 257 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~ 257 (301)
++|+..+++.-++.|+ +.-+++.++.++.++++...+
T Consensus 574 ~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 574 VEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHH
Confidence 9999999999999996 999999999999999985543
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4e-23 Score=179.25 Aligned_cols=222 Identities=16% Similarity=0.115 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------------------------hCCCchhhHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------------------------QFPESKRVGRLEGILL 108 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------------------------~~p~~~~~~~~~a~~~ 108 (301)
..-+..++|.+|+..++|++|..+|+.+.+ .+|..|..|..+|.|+
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcf 431 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCF 431 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchh
Confidence 345777999999999999999999977666 4466778999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (301)
Q Consensus 109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 188 (301)
.-+++++.|+++|++++..+|....+|..+|.-+.....+|.|..+|+.++..+|.+-.+|+.+|.+|.++++++.|.-.
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--ch
Q 022205 189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SP 266 (301)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~ 266 (301)
|++|+.++|.+......+|.++.++|+ .++|+..|++|+.++|. ++-..|.-+.++..+++..++....++- ..
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999999999999999 99999999999999996 8888888888888777755443222211 11
Q ss_pred HHHHHHHHHHHHHHHhhCChhh
Q 022205 267 ELQSLAAAALEKDYKQRAPAKL 288 (301)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~ 288 (301)
..-..+-.-+.++|++.++.++
T Consensus 588 P~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred cchHHHHHHHHHHHHHHccchH
Confidence 1122233357888888887554
No 8
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=166.82 Aligned_cols=184 Identities=17% Similarity=0.137 Sum_probs=171.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 148 (301)
..|..+++.|++.+|.-+|+.+++.+|.+..+|..+|.+....++=..|+..++++++.+|++..++..||..|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 34888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHhc-----------------------------------------C--CCHHHHHHHHHHHHHcccHHHH
Q 022205 149 PTAIEWLNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 149 ~~A~~~~~~~l~~~-----------------------------------------p--~~~~~~~~lg~~~~~~~~~~~A 185 (301)
.+|...+.+.+... | .++++...||.+|...|+|++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888888765432 4 4577888999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
+.||+.||...|+|...|..||-.+....+ ..+|+..|++|+++.|+ ++|++|++|+++.++|.+.+
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHH
Confidence 999999999999999999999999999999 99999999999999996 99999999999999997554
No 9
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=3.2e-20 Score=150.28 Aligned_cols=188 Identities=14% Similarity=0.137 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
.....+..+|..++..|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 142 AKAQGNFPTAIEWLNKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
+...|++++|+..+++++... |..+..+..+|.++...|++++|...+.+++..+|+++.++..+|.++...|+ +
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence 999999999999999999854 45677899999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
++|..++++++...|. +...++.++.++...++
T Consensus 186 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 186 KDARAYLERYQQTYNQ-TAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhh
Confidence 9999999999999775 77777777776666665
No 10
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.9e-21 Score=159.90 Aligned_cols=212 Identities=19% Similarity=0.094 Sum_probs=172.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 149 (301)
+|..+.-.++.+.|+.+|+++++.+|....+|.++|.-|..+++...|++.|++|++.+|.+-.+|+.+|++|.-++...
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 35556666788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
-|+-+|++++..-|+|+..|..||.||.+.++.++|++||.+++.....+..++..+|.+|..+++ .++|..+|.+.
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek~ 492 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998889999999999999999 99999999999
Q ss_pred hcc-------cCCCchhHhhhHHHHHHHHHhhhccCCcc--cccchHHHHHHHHHHHHHHHhhCC
Q 022205 230 IDL-------TGGKNTKALFGICLCSSAIAQLTKGRNKE--DKESPELQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 230 l~~-------~p~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 285 (301)
++. +|. ...+..-|+.-..++.+..++..-. .-......+.+..-++++-+.++|
T Consensus 493 v~~~~~eg~~~~~-t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~p 556 (559)
T KOG1155|consen 493 VEVSELEGEIDDE-TIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQAP 556 (559)
T ss_pred HHHHHhhcccchH-HHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 983 443 4444444665555555544322100 001234445555666666555543
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.88 E-value=1.8e-20 Score=143.77 Aligned_cols=188 Identities=15% Similarity=0.122 Sum_probs=172.3
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
....+..++|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++.+|++.+++++.|..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 142 AKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
++.+|++++|...|++++.. .|..+.+|.++|.|..+.|+++.|..+|+++++++|+++.....++..++..|+ +
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y 189 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---Y 189 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---c
Confidence 99999999999999999974 456678999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
-.|..++++....-+ .....++-.......+|+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 999999999888766 366666544444455554
No 12
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.5e-20 Score=169.44 Aligned_cols=192 Identities=12% Similarity=-0.025 Sum_probs=163.1
Q ss_pred cCCchhHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022205 58 ALGPDVWTLYEQVSIAAMDC---------QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN 128 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 128 (301)
.++|+...++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+
T Consensus 289 ~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 289 NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33788788888888766532 447899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 022205 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYA 207 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 207 (301)
|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++.++..+|
T Consensus 369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 99999999999999999999999999999999999988777777777888899999999999988775 77888889999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.++...|+ +++|...+.+.....|. ...++..++..+...++
T Consensus 449 ~~l~~~G~---~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 449 MFLSLKGK---HELARKLTKEISTQEIT-GLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHhCCC---HHHHHHHHHHhhhccch-hHHHHHHHHHHHhccHH
Confidence 99999999 99999999988887774 66667777766666553
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=8.6e-20 Score=168.56 Aligned_cols=195 Identities=13% Similarity=-0.022 Sum_probs=144.7
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH----
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH---- 135 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---- 135 (301)
+|+...++..+|..+...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666655555544433
Q ss_pred ------------------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH-
Q 022205 136 ------------------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ- 184 (301)
Q Consensus 136 ------------------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~- 184 (301)
..++.++...|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 2235566667788888888888888888888888888888888888875
Q ss_pred ---HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 185 ---AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 185 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
|+..|++++.++|+++.++..+|.++...|+ +++|+..+++++.++|+ +..++..++.++...++...+.
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ---NEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 7888888888888888888888888888888 88888888888888885 7778888888887777755443
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.1e-19 Score=167.87 Aligned_cols=211 Identities=10% Similarity=-0.027 Sum_probs=181.6
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
.++...+..+...++.. .|..+.++..++.+.+..|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 55 ~g~~~~A~~l~~~~l~~-------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT-------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred cCCcchhHHHhHHHHHh-------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 34455555555555555 78888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH------------------------
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------------------------ 171 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------------------------ 171 (301)
+|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998888877665533
Q ss_pred ----------HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhcccCCCc
Q 022205 172 ----------LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL----AKKYYASTIDLTGGKN 237 (301)
Q Consensus 172 ----------lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~----A~~~~~~al~~~p~~~ 237 (301)
++.++...|++++|+..|++++..+|+++.++..+|.++...|+ +++ |+..|++++.++|+ +
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCC-C
Confidence 34566677888888888888888888888888899999999998 775 78999999999996 8
Q ss_pred hhHhhhHHHHHHHHHhhhcc
Q 022205 238 TKALFGICLCSSAIAQLTKG 257 (301)
Q Consensus 238 ~~~~~~l~~~~~~l~~~~~~ 257 (301)
..++..++.++...++...+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHH
Confidence 88888888888877765544
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=4.7e-20 Score=167.63 Aligned_cols=216 Identities=13% Similarity=-0.058 Sum_probs=176.7
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 148 (301)
+++++|+.++++++..+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++.++|.++..+..++.+++..|+ +++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777888888999 9999999999
Q ss_pred HhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccc--hHHHHHHHHHHHHHHHhhCChhhhHHHHHHh
Q 022205 229 TIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKES--PELQSLAAAALEKDYKQRAPAKLLLLTSALK 296 (301)
Q Consensus 229 al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 296 (301)
++...|..+..++..++.++..+|+..++.....+.. ..-...+...+...|...+..-.+.|..+++
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9988632377788889999988887665444332211 1112223334555555555433444555444
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=5.1e-19 Score=167.68 Aligned_cols=178 Identities=13% Similarity=-0.051 Sum_probs=154.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.+..+|.++...|++++|+.+++++++..|+.......++......|++++|+..|++++..+|+ +.++..+|.++...
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l 622 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence 45677888888999999999999999988888777666666667779999999999999999996 88899999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY 225 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~ 225 (301)
|++++|+..|++++..+|+++.++.++|.++...|++++|+.+|+++++++|+++.++.++|.++...|+ +++|+.+
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcccCCCchhHhhhHHHHH
Q 022205 226 YASTIDLTGGKNTKALFGICLCS 248 (301)
Q Consensus 226 ~~~al~~~p~~~~~~~~~l~~~~ 248 (301)
|++++.++|+ .....+..+...
T Consensus 700 l~~Al~l~P~-~a~i~~~~g~~~ 721 (987)
T PRK09782 700 ARLVIDDIDN-QALITPLTPEQN 721 (987)
T ss_pred HHHHHhcCCC-CchhhhhhhHHH
Confidence 9999999996 666665555433
No 17
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.8e-19 Score=150.72 Aligned_cols=194 Identities=17% Similarity=0.147 Sum_probs=173.6
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---h-------------------------------hHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---R-------------------------------VGRLEG 105 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~-------------------------------~~~~~a 105 (301)
-|....+-.+.|.+.....++++|+..|+.+.+.+|-.. . ....+|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeeh
Confidence 345555666778888888999999999999998888221 1 222346
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A 185 (301)
+.|.-.++.++|+.+|+++++.+|....+|..+|.-|..+.+...|+..|+++++.+|.|-.+|+.||.+|.-++.+.=|
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Ya 417 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYA 417 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHH
Confidence 66777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG 257 (301)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~ 257 (301)
+-+|++|++..|.|+..|..+|.||.++++ .++|+++|.+++.... .+..+++.|+..+.++.+..++
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999 9999999999999987 4889999999999999886553
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=5.4e-19 Score=148.32 Aligned_cols=195 Identities=15% Similarity=0.024 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHH
Q 022205 40 DKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE 118 (301)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 118 (301)
+..+.....++.. .+++| .....|.++|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 43 e~~i~~~~~~l~~----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 43 EVILARLNQILAS----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHcc----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4444444445533 23444 457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--
Q 022205 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-- 196 (301)
Q Consensus 119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 196 (301)
..|+++++.+|++..++.++|.++...|++++|+..|+++++.+|+++.... ...+....+++++|+..|.+++...
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999974211 1122334567777777776554332
Q ss_pred -----------------------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205 197 -----------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL 241 (301)
Q Consensus 197 -----------------------------------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (301)
|..+.+|+.+|.++...|+ +++|+.+|++++..+|..++...
T Consensus 198 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 198 EQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred cccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCchHHHHH
Confidence 2223456666777777777 77777777777777653234333
Q ss_pred h
Q 022205 242 F 242 (301)
Q Consensus 242 ~ 242 (301)
+
T Consensus 275 ~ 275 (296)
T PRK11189 275 Y 275 (296)
T ss_pred H
Confidence 3
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=4.2e-19 Score=174.06 Aligned_cols=207 Identities=14% Similarity=0.043 Sum_probs=174.0
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh--------------H
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV--------------G 101 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~ 101 (301)
.++.++++......+.. +|++..++..+|.+++..|++++|+.+|+++++.+|++... .
T Consensus 282 ~g~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred CCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 34455555555555544 77788899999999999999999999999999998865431 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH------
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI------ 175 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~------ 175 (301)
...|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 34577888999999999999999999999999999999999999999999999999999999988776655544
Q ss_pred ------------------------------------HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 176 ------------------------------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 176 ------------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
+...|++++|+.+|+++++++|+++.+++.+|.++...|+ +
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---~ 511 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---R 511 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---H
Confidence 4457899999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
++|+..|+++++.+|+ +..+++.+++.+...++
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCC
Confidence 9999999999999996 88888888776665544
No 20
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.8e-20 Score=153.39 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=179.2
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
..++|.....|..++..+++..+..+....|.++.+++|.++.+++.+|.+++-.+++++|+..|+++++++|.+..++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 44466666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVL 210 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 210 (301)
.++.+.+++++++++...|+.+++.+|++++++...|.++..+++|++|++.|.+++.+.|. ++..+.+-|.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998 655555555544
Q ss_pred HH-cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 211 YT-LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 211 ~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
.+ .++ +..|+..+++|+++||. .-.++-+++....+.++..++.
T Consensus 513 ~qwk~d---~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 513 LQWKED---INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hchhhh---HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence 43 355 99999999999999996 8888999998888888765544
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.1e-18 Score=152.82 Aligned_cols=172 Identities=13% Similarity=0.049 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH 135 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 135 (301)
+|+++.++..+|..+...|++++|+.+++.++...+.. ..++..+|.++...|++++|+..|++++..+|.+..++
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 34444444555555555555555555555444421111 12344445555555555555555555555444444455
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
..++.++...|++++|+..+++++...|.+. ..+..+|.++...|++++|+.+|++++..+|++..++..+|.++
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 224 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHH
Confidence 5555555555555555555555544444331 12334444445555555555555555555555444555555555
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccC
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
...|+ +++|+..|++++..+|
T Consensus 225 ~~~g~---~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 225 LAQGD---YAAAIEALERVEEQDP 245 (389)
T ss_pred HHCCC---HHHHHHHHHHHHHHCh
Confidence 55555 5555555555554444
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=1e-18 Score=167.87 Aligned_cols=204 Identities=21% Similarity=0.169 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (301)
++.+.+.......+.. +|+....+..++..+...|++++|+.+++.+....|.++..+..+|.++...|++++
T Consensus 649 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 649 KNYAKAITSLKRALEL-------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred CCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 4444555444444433 334444444444444555555555555555544444444444444555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
|+..|++++...|++ ..+..++.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+.+|+++++.+
T Consensus 722 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 722 AIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 555555554444444 3334444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|+++.++..+|.++...|+ . +|+.++++++.+.|+ +...+..++.++...++
T Consensus 801 p~~~~~~~~l~~~~~~~~~---~-~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD---P-RALEYAEKALKLAPN-IPAILDTLGWLLVEKGE 852 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc---H-HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence 4444444444444444444 2 244444444444443 44444444444444443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.4e-18 Score=163.08 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=179.4
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (301)
....+++......+.. .|+.+. ...++..+...|++++|+..++++....|. ...+..+|.++...|++++
T Consensus 490 ~~~~eAi~a~~~Al~~-------~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 490 TLPGVALYAWLQAEQR-------QPDAWQ-HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred CCcHHHHHHHHHHHHh-------CCchHH-HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHH
Confidence 3555555544444433 344443 555677778999999999999998776554 4557788999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
|+.+|++++..+|.+...+..++......|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+.+|++++.++
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999888887777778889999999999999999996 9999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
|+++.++.++|.++...|+ +++|+..|+++++++|+ +..+++.++.++..+++...
T Consensus 640 Pd~~~a~~nLG~aL~~~G~---~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGD---IAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999 99999999999999996 99999999999999888554
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=2e-18 Score=169.33 Aligned_cols=191 Identities=16% Similarity=0.099 Sum_probs=142.4
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH---------------------------------
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI--------------------------------- 106 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~--------------------------------- 106 (301)
+|....++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 67777788889999999999999999999999999987766554443
Q ss_pred ---------HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH------
Q 022205 107 ---------LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE------ 171 (301)
Q Consensus 107 ---------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------ 171 (301)
++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+++..++.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999998888877655443
Q ss_pred --------------------------------------------------------------------HHHHHHHcccHH
Q 022205 172 --------------------------------------------------------------------LAEIYVSLQMYK 183 (301)
Q Consensus 172 --------------------------------------------------------------------lg~~~~~~~~~~ 183 (301)
+|.++...|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 455555556666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
+|+.+|++++..+|+++.++..+|.++...|+ +++|+..|++++...|+ +..++..++.++..+++.
T Consensus 621 ~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 621 AARAAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCH
Confidence 66666666666666666666666666666666 66666666666666664 555555555555554443
No 25
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=9.1e-19 Score=168.23 Aligned_cols=191 Identities=16% Similarity=0.122 Sum_probs=120.7
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|..+..+..+|.++...|++++|+.++++++...|++..++..+|.++...|++++|+..|++++..+|.+..++..++
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 540 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++.++..+|.++...|+ +
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 617 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD---L 617 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---H
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666666 6
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
++|+..|+++++.+|. +..+++.++.++...++.
T Consensus 618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 6666666666666553 555555555555554443
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=5.6e-18 Score=137.05 Aligned_cols=190 Identities=19% Similarity=0.185 Sum_probs=171.5
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (301)
..++.+.+.......+.. +|.....+..+|..+...|++++|+..+++++...|.+..++..+|.++...|++
T Consensus 43 ~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEH-------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 355667777776666654 5677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 115 AEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 115 ~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|+++.++..+|.++...|++++|+.+++++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999853 5567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
+...|.++..+..++.++...|+ .++|..+.+.+....|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 196 QQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhCc
Confidence 99999999999999999999999 9999998887766543
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=9.4e-18 Score=146.95 Aligned_cols=190 Identities=13% Similarity=0.028 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKR 137 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~ 137 (301)
....+..+|..+...|+++.|+.++.++++..|.+..++..++.++...|++++|+..+++++..+|.+.. .+..
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 34678899999999999999999999999988988999999999999999999999999999998876532 5667
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGV 216 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~ 216 (301)
+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+ ..++..++.++...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~- 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD- 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-
Confidence 89999999999999999999999999999999999999999999999999999999998876 4567889999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG 257 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~ 257 (301)
+++|...++++++..|+ . .....++..+...++...+
T Consensus 265 --~~~A~~~l~~~~~~~p~-~-~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 265 --EAEGLEFLRRALEEYPG-A-DLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred --HHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHhCCHHHH
Confidence 99999999999999995 4 3346677777776664443
No 28
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.1e-17 Score=140.50 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=181.5
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhH
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
.++.+++.+..... .++.++.....++.. +|.+.++|...+.++...| ++++++..+++++..+|++..+|
T Consensus 38 ~a~~~~ra~l~~~e-~serAL~lt~~aI~l-------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 38 EAMDYFRAVYASDE-RSPRALDLTADVIRL-------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 57778887765554 566777777777765 8888999998888888888 67999999999999999999999
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 102 RLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 102 ~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
..++.++...|+. ++++.++.++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|+..|.+....
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999998888874 67899999999999999999999999999999999999999999999999999999999888765
Q ss_pred ---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205 180 ---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS 248 (301)
Q Consensus 180 ---~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~ 248 (301)
|.+ +.++.+..+++..+|++..+|..++.++.. +++ ..+|...+.+++..+|. ...++--|+.++
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~---~~~~~~~~~~~~~~~~~-s~~al~~l~d~~ 265 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS---DPEVSSVCLEVLSKDSN-HVFALSDLLDLL 265 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc---chhHHHHHHHhhcccCC-cHHHHHHHHHHH
Confidence 323 578888889999999999999999998887 344 67799999998888885 777777777777
Q ss_pred HH
Q 022205 249 SA 250 (301)
Q Consensus 249 ~~ 250 (301)
..
T Consensus 266 ~~ 267 (320)
T PLN02789 266 CE 267 (320)
T ss_pred Hh
Confidence 65
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.2e-18 Score=149.04 Aligned_cols=196 Identities=13% Similarity=0.008 Sum_probs=147.2
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|..+-.|+.+|..|+..|++.+|..+|.++...+|....+|...|..+...|..++|+..|..|-+.-|........+|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 67777788888888888899999999999999999998889998888888888888888888888877777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC----C---CCHHHHHHHHHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----P---TVPLYHLAYADVLYT 212 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p---~~~~~~~~la~~~~~ 212 (301)
.-|...++++-|.++|.+++.+.|++|-....+|.+.+..+.|.+|..+|+.++..- + .-...+.++|.++.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777666221 1 123346667777777
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCC
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN 259 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~ 259 (301)
++. +++|+.+|++++.+.|. +...+-.+|.++..+|++.++..
T Consensus 468 l~~---~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 468 LNK---YEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred Hhh---HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH
Confidence 777 77777777777777774 67777777777777666555443
No 30
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.81 E-value=1e-17 Score=136.55 Aligned_cols=174 Identities=17% Similarity=0.053 Sum_probs=155.1
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV- 133 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~- 133 (301)
+..+.....++.+|..++..|+++.|+..+++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34566888999999999999999999999999999999776 57899999999999999999999999999998876
Q ss_pred --HHHHHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccHHHHH
Q 022205 134 --LHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA 186 (301)
Q Consensus 134 --~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~ 186 (301)
+++.+|.++... |++++|+..|++++..+|++..++ ..+|.+++..|++.+|+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 688999999876 889999999999999999986543 36788899999999999
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 187 FCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 187 ~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
..|++++...|+. +.+++.+|.++..+|+ +++|..+++......|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 9999999997764 5799999999999999 9999998887766554
No 31
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.3e-18 Score=146.79 Aligned_cols=191 Identities=15% Similarity=0.174 Sum_probs=172.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----------
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---------- 129 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------- 129 (301)
+|++..+|..||.+...+++-..|+..+.++++++|++..++..+|..|...|.-.+|+.++.+-+...|
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 8999999999999999999999999999999999999999999999999999999999999888875332
Q ss_pred ---------------------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 130 ---------------------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 130 ---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
.++++...||.+|...|+|++|+.+|+.++...|++...|..||-.+
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 35778999999999999999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC----Cc-----hhHhhhHHHH
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG----KN-----TKALFGICLC 247 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~-----~~~~~~l~~~ 247 (301)
....+..+|+..|++|+++.|....+++++|.++..+|. |++|+++|-.||.+.+. .. -.+|-.|-++
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~a 551 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLA 551 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999998764 11 1345555555
Q ss_pred HHHHHh
Q 022205 248 SSAIAQ 253 (301)
Q Consensus 248 ~~~l~~ 253 (301)
.+.+++
T Consensus 552 ls~~~~ 557 (579)
T KOG1125|consen 552 LSAMNR 557 (579)
T ss_pred HHHcCC
Confidence 555544
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.4e-18 Score=143.58 Aligned_cols=185 Identities=18% Similarity=0.171 Sum_probs=168.4
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
..++|.....|...|..+.-.|..++|+.++..+.+..|++......+|.-|.+++++..|..+|..++.+.|.++.++.
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~ 418 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLH 418 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhh
Confidence 44577788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETF----M---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~----p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
.+|.+.+..+.|.+|..+|+.++..- + .-.+.+.+||.++.+.+.+++|+.+|+++|.+.|.++.++..+|.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 99999999999999999999998432 2 2245689999999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
|..+|+ ++.|+++|.+++-++|+ +.-+---|.
T Consensus 499 y~llgn---ld~Aid~fhKaL~l~p~-n~~~~~lL~ 530 (611)
T KOG1173|consen 499 YHLLGN---LDKAIDHFHKALALKPD-NIFISELLK 530 (611)
T ss_pred HHHhcC---hHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 999999 99999999999999997 543333333
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.6e-18 Score=141.86 Aligned_cols=210 Identities=17% Similarity=0.065 Sum_probs=188.3
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCC---------CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ 93 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 93 (301)
++..-++.....+++.....+..+........ .+..++|+++.+|+..|+..+-.+++++|+.-|++++.+
T Consensus 344 ~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 344 GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66677777778888888877777766554321 346779999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHH
Q 022205 94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHD 167 (301)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~ 167 (301)
+|++..++..++....+++++++++..|+.+....|+.++++...|.++..+++|++|++.|..++++.|. ++.
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 666
Q ss_pred HHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 168 AWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 168 ~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+...|.+..+ .+++..|+..++++++++|....++..+|.+...+|+ .++|+++|++++.+...
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLART 569 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 66666665544 5899999999999999999999999999999999999 99999999999988653
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=7.1e-18 Score=126.08 Aligned_cols=120 Identities=14% Similarity=0.038 Sum_probs=57.0
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (301)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (301)
+++++..+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++
T Consensus 16 ~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 16 LKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44444444432 223444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
.+++++|.++...|++++|+..|++++.+.|+++..+..+|.+
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=8.9e-18 Score=125.54 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
...|+++++.+|++ +..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999985 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+++.+++++|.++..+|+ +++|+..|++++.++|+ +...+...+.+...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999996 8888877777666554
No 36
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=6.7e-17 Score=135.70 Aligned_cols=223 Identities=14% Similarity=-0.001 Sum_probs=180.2
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.|+...++..+-.++...+..++|+..+.+++..+|++..+|..++.++...| ++++++..+.+++..+|.+..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34445555555555677889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--
Q 022205 139 VAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-- 214 (301)
Q Consensus 139 ~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 214 (301)
+.+....|+. ++++.++.++++.+|++..+|...|.++...|++++|+.++.++++.+|.+..+|...+.+....|
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 9999999874 788999999999999999999999999999999999999999999999999999999999988763
Q ss_pred -CC-CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH----hhhccCCccc--ccchHHHHHHHHHHHHHHHhh
Q 022205 215 -GV-DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA----QLTKGRNKED--KESPELQSLAAAALEKDYKQR 283 (301)
Q Consensus 215 -~~-~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~----~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 283 (301)
.. ...++++.+..+++.++|+ +..+|..++-++...+ ....+...-. -.....+..+...|.++|...
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 31 1135788999999999996 8889987777766521 1110000000 012233445666788888753
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=2e-18 Score=144.34 Aligned_cols=193 Identities=19% Similarity=0.086 Sum_probs=120.7
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKR 137 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 137 (301)
++.....+..++.. ...+++++|+.++..+.+.++ ++..+.....++...++++++...++++.... +.++.+|..
T Consensus 74 ~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 151 (280)
T PF13429_consen 74 DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLA 151 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 44555566666666 688999999999988887654 46666677778889999999999999977644 678889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 217 (301)
+|.++...|++++|+..++++++.+|+++.++..++.++...|+++++...+.......|+++..+..+|.++..+|+
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-- 229 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-- 229 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--
Confidence 999999999999999999999999999999999999999999999999888888888888888899999999999999
Q ss_pred cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
+++|+.+|+++++.+|+ +...+..++.++...|+...+.
T Consensus 230 -~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 230 -YEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------
T ss_pred -ccccccccccccccccc-cccccccccccccccccccccc
Confidence 99999999999999996 9999999999999988855443
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=3.4e-18 Score=142.96 Aligned_cols=166 Identities=25% Similarity=0.264 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
...+...+..+...++++++...++.+.... |.++.++..+|.++...|++++|+..|++++..+|+++.+...++.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445556677889999999999999987654 57889999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
+...|+.+++...+.......|.++..|..+|.++...|++++|+.+|++++..+|+++..+..+|.++...|+ .++
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~ 266 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDE 266 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---ccc
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcc
Q 022205 222 AKKYYASTIDL 232 (301)
Q Consensus 222 A~~~~~~al~~ 232 (301)
|...++++++.
T Consensus 267 A~~~~~~~~~~ 277 (280)
T PF13429_consen 267 ALRLRRQALRL 277 (280)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99999998764
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=3.2e-16 Score=131.57 Aligned_cols=154 Identities=17% Similarity=0.059 Sum_probs=134.9
Q ss_pred CCChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (301)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566788889999996444 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
..|+++++++|++..+|.++|.++...|++++|+..|++++..+|+++.... ...+....++ +++|+..|.+++..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCC---HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999984222 2233445677 99999999887755
Q ss_pred cC
Q 022205 233 TG 234 (301)
Q Consensus 233 ~p 234 (301)
.+
T Consensus 195 ~~ 196 (296)
T PRK11189 195 LD 196 (296)
T ss_pred CC
Confidence 33
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.75 E-value=2.6e-16 Score=123.86 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=130.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
+..|+..|+++.......... .|..+ +...++.++++..+++++..+|++...|..+|.++...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~~---------~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLHQ---------FASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Ccccc---------ccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 446778899887654432221 12111 1125778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH-HHccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|.+++..|+ +++|+.+|+
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999999999975 67787 5999999999999999999999999999999999 999999999
Q ss_pred HHhcccCC
Q 022205 228 STIDLTGG 235 (301)
Q Consensus 228 ~al~~~p~ 235 (301)
+++++.|.
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99999986
No 41
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.7e-17 Score=130.97 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
.++.+..++.+|.+..+...|+..+...++.+|.+.......++++..++++++|.++|+.+++.+|.+.++...+|.-|
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCCCcH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~~ 219 (301)
+.-++++-|+.+|++.+...-.+|+.+.++|.|++..++++-++.+|++++.... .-.++|+++|.+..-.|+ +
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~ 411 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---F 411 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---h
Confidence 9999999999999999999999999999999999999999999999999997653 236799999999999999 9
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
.-|..+|+-++.-+|+ +..++.+|++...+-|+.
T Consensus 412 nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCch
Confidence 9999999999999996 999999999887776653
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4.5e-17 Score=131.08 Aligned_cols=183 Identities=14% Similarity=0.033 Sum_probs=169.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|.+.+.....|.++-..++.++|.++++.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+...-.+++.+.++|
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig 365 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG 365 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence 67788888888989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 216 (301)
.|.+..++++-++..|++++..-.+. .++|+++|.+....|++.-|..+|+-++..+|++..++.++|.+..+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~- 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD- 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-
Confidence 99999999999999999999875432 68999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
.++|..++..+-.+.|+ -....++++.
T Consensus 445 --i~~Arsll~~A~s~~P~-m~E~~~Nl~~ 471 (478)
T KOG1129|consen 445 --ILGARSLLNAAKSVMPD-MAEVTTNLQF 471 (478)
T ss_pred --hHHHHHHHHHhhhhCcc-ccccccceeE
Confidence 99999999999999996 6666666554
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.2e-15 Score=138.02 Aligned_cols=189 Identities=17% Similarity=0.142 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHc------------CCHHHHHHHHHHHHhcC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAK------------GLWAEAEKAYSSLLEDN 128 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~------------~~~~~A~~~~~~al~~~ 128 (301)
++.++..+|..++....+.-|..-|+.+++.-. .++.+...+|+++++. +.+++|+..|.+++..+
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 334444445555555555555554444444322 2334445555555433 46789999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 022205 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAY 206 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 206 (301)
|.|..+-..+|.++...|++.+|+.+|.++.+.-.+++++|.++|+||+.+|+|..|+..|+.+++.. .+++.++..|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 99999999999999999999999999999999887789999999999999999999999999999654 3568899999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
|.+++..|. +.+|...+.+|+.+.|. +.-..++++++..++....
T Consensus 723 ara~y~~~~---~~eak~~ll~a~~~~p~-~~~v~FN~a~v~kkla~s~ 767 (1018)
T KOG2002|consen 723 ARAWYEAGK---LQEAKEALLKARHLAPS-NTSVKFNLALVLKKLAESI 767 (1018)
T ss_pred HHHHHHhhh---HHHHHHHHHHHHHhCCc-cchHHhHHHHHHHHHHHHH
Confidence 999999999 99999999999999996 8889999999999888644
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=9.3e-16 Score=124.94 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=141.7
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---H
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---A 168 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~ 168 (301)
+..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45677899999999999999999999999999999876 57899999999999999999999999999998876 7
Q ss_pred HHHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHHHHH
Q 022205 169 WRELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 169 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~~~~A~ 223 (301)
++.+|.++... |++++|+..|++++..+|++..++ ..+|.+++..|+ +.+|+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHH
Confidence 89999999886 899999999999999999986542 357888999999 99999
Q ss_pred HHHHHHhcccCC--CchhHhhhHHHHHHHHHhhh
Q 022205 224 KYYASTIDLTGG--KNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 224 ~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~~~ 255 (301)
..|+++++..|+ ....+++.++.++..+++..
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 999999999875 35689999999999998744
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.72 E-value=3.1e-15 Score=137.22 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=146.9
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (301)
..+++.-+......+|.++.+++++|.+..+.|.+++|...++.+++..|++..++..++.++.+.+++++|...+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 34455555556667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (301)
..+|+++.+.+.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+ .++|...|+++++...+ -.+
T Consensus 148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~~ 223 (694)
T PRK15179 148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GAR 223 (694)
T ss_pred hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-chH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999998775 445
Q ss_pred Hhh
Q 022205 240 ALF 242 (301)
Q Consensus 240 ~~~ 242 (301)
.+.
T Consensus 224 ~~~ 226 (694)
T PRK15179 224 KLT 226 (694)
T ss_pred HHH
Confidence 543
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.71 E-value=1e-15 Score=120.51 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=118.1
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hhHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE 153 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~ 153 (301)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|++++..+|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
.++++++.+|+++.+++.+|.+++..|++++|+.+|+++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887654
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=6.6e-15 Score=113.39 Aligned_cols=173 Identities=20% Similarity=0.070 Sum_probs=161.3
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--DNPLDPVLHKR 137 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 137 (301)
+|....+|.-+|..|...|+.+.|.+.|++++...|++..++.+.|..+..+|++++|...|++++. ..|..+.++.+
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 8889999999999999999999999999999999999999999999999999999999999999998 33556779999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 217 (301)
+|.|..+.|+++.|..+|+++++.+|+.+.+...++..++..|++-.|..++++.....+-....+.....+....|+
T Consensus 145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd-- 222 (250)
T COG3063 145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD-- 222 (250)
T ss_pred hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999999999999999999999999999999998888788887777888999999
Q ss_pred cHHHHHHHHHHHhcccCC
Q 022205 218 NILLAKKYYASTIDLTGG 235 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p~ 235 (301)
-+.|-++=.+..+..|.
T Consensus 223 -~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 223 -RAAAQRYQAQLQRLFPY 239 (250)
T ss_pred -HHHHHHHHHHHHHhCCC
Confidence 88888888787888885
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=5.5e-15 Score=139.43 Aligned_cols=165 Identities=10% Similarity=-0.062 Sum_probs=142.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--------------- 130 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------------- 130 (301)
++..++..|++++|+.+|++++...|.+ ......++.++...|++++|+..++++...+|.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778889999999999999988877755 234556677788889999999999998887762
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
...++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 23467788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTGGKNT 238 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (301)
...|+ +++|...++++++..|+ +.
T Consensus 438 l~~~~---~~~A~~~~~~ll~~~Pd-~~ 461 (765)
T PRK10049 438 LDLQE---WRQMDVLTDDVVAREPQ-DP 461 (765)
T ss_pred HHhCC---HHHHHHHHHHHHHhCCC-CH
Confidence 99999 99999999999999996 44
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.70 E-value=7e-15 Score=138.70 Aligned_cols=179 Identities=13% Similarity=-0.015 Sum_probs=156.7
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCC
Q 022205 73 AAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGN 147 (301)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~ 147 (301)
.++..|++++|+..|+++++..|..| .+...+|.++...|++++|+..|++++..+|.+ ......++.++...|+
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 44677999999999999998864332 234446999999999999999999999988876 3567778888999999
Q ss_pred hhHHHHHHHHHHHhcCC-------------C--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 148 FPTAIEWLNKYLETFMA-------------D--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~-------------~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
+++|+..++++...+|. + ..++..+|.++...|++++|+..+++++...|+++.++..+|.++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999998773 2 35678899999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
.|+ +++|+..+++++.++|+ +...++..+.+...+++..
T Consensus 406 ~g~---~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 406 RGW---PRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWR 444 (765)
T ss_pred cCC---HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHH
Confidence 999 99999999999999996 9999999999888877633
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=4.6e-15 Score=138.43 Aligned_cols=191 Identities=10% Similarity=-0.060 Sum_probs=163.4
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
.+.|..+...+..+...++.|+++.|+..|.++++.+|.++....-+..++...|+.++|+.++++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 44667777888889999999999999999999999999986444477888888999999999999999444555555555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 217 (301)
+|.++...|++++|+..|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~-- 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR-- 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch--
Confidence 68899999999999999999999999999999999999999999999999999999999986665 555666655666
Q ss_pred cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
..+|+..|+++++.+|+ +...++.+..+...++-
T Consensus 185 -~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 185 -NYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRI 218 (822)
T ss_pred -HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 77799999999999996 88888887777666554
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=7e-15 Score=123.44 Aligned_cols=195 Identities=16% Similarity=-0.007 Sum_probs=157.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+..++.+..+.|...+.+|+++.|...++.++..+..+..+++.+|..+..+|+.++|+.+|-+.-..--++..++..++
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33456666677777788888888888888888888888888888888888888888888888888777777888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
.+|..+.+..+|++++-++..+-|++|..+..||.+|-+.|+-.+|..|+-......|.+.+..-.+|..|....- +
T Consensus 566 niye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~ 642 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---S 642 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---H
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888887777 8
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
++|+.+|+++--+.|+ ...-...++.|..+.|+..++.
T Consensus 643 ekai~y~ekaaliqp~-~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPN-QSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HHHHHHHHHHHhcCcc-HHHHHHHHHHHHHhcccHHHHH
Confidence 8888888888888884 5544566777777777755543
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=8.7e-15 Score=132.58 Aligned_cols=192 Identities=15% Similarity=0.061 Sum_probs=136.5
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.|++.-.+.-.|...+..|+|-.|+.+|..++...|. -+.....+|.|+..+|+.+.|+..|.++++.+|++..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 5666666666677777788888888888888888874 345667778888888888888888888888888888877777
Q ss_pred HHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q 022205 139 VAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYT 212 (301)
Q Consensus 139 ~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 212 (301)
|.+-....+ +..+...+.++...+|.+|.+...|+..++..|+|+.+......++...... ...++.+|.+|..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 776665543 5567777777777777777777777777777777776666666666554322 2346666777777
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
+|+ +++|..+|.+++..+|++.+-.++|++..+...+++
T Consensus 320 ~Gd---~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 320 QGD---FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred hcc---HHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 777 777777777777666653366666666666665553
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.4e-14 Score=115.35 Aligned_cols=209 Identities=14% Similarity=0.121 Sum_probs=131.9
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEA 110 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~ 110 (301)
...++.+++....++.. +|+...+...+|..+-+.|..+.|+.+-..++. .|+. ..+...+|.-|+.
T Consensus 48 s~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH
Confidence 44555566666665554 566666666667777777777777766655554 2422 2345566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcccHHHH
Q 022205 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~lg~~~~~~~~~~~A 185 (301)
.|-++.|...|.........-..+...+..+|....+|++|+..-++...+.|.. +..+..|+..+....+++.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 6777777777766655444444566666677777777777777777666666544 34556666666666667777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
+..+.++++.+|++..+-..+|.++...|+ ++.|++.++.+++.||+.-....-.|..||..+|+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 777777777777776666677777777777 7777777777777766522334445666666666533
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.68 E-value=4.6e-15 Score=110.11 Aligned_cols=114 Identities=19% Similarity=0.138 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
..+++++..+|++..+...+|..+...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++..++.+|.++...|+ +++|+..|+++++++|+
T Consensus 84 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE---PESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 88888888888888888 88888888888888885
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.67 E-value=1.7e-14 Score=126.59 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=158.8
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-- 126 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-- 126 (301)
....|..+.+...++..|...|+++.|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3447788888889999999999999999999999997 444444555689999999999999999999997
Q ss_pred ------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 127 ------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 127 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
.+|.-..++.+|+.+|...|++++|..++++++++.. .-+..+.+++.++...+++++|+.+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3455566899999999999999999999999998742 22456788999999999999999999999
Q ss_pred HhhC-----CCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-------CchhHhhhHHHHHHHHHh
Q 022205 193 ILSQ-----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-------KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 193 l~~~-----p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~l~~~~~~l~~ 253 (301)
+++- +++ +..+.++|.+|+.+|+ +++|.+.|++|+.+... .....++.++..+.++..
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk---~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGK---YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 9653 333 5688999999999999 99999999999988532 123344556665555544
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=3.7e-14 Score=127.68 Aligned_cols=208 Identities=16% Similarity=0.150 Sum_probs=143.7
Q ss_pred ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (301)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (301)
+-+++.++...++.. +|.++.+|..+|.++-+.|+.+++...+-.+-..+|.+...|..++.....+|++.+|
T Consensus 154 ~~eeA~~i~~EvIkq-------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQ-------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred CHHHHHHHHHHHHHh-------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 344455555555544 5555666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------------
Q 022205 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------------------------------- 164 (301)
Q Consensus 118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------------- 164 (301)
.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++..+|.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666666666666666655555555554443331
Q ss_pred --------------------------------------------------------------------------------
Q 022205 165 -------------------------------------------------------------------------------- 164 (301)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (301)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred --------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCCC
Q 022205 165 --------------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAYADVLYTLGGVD 217 (301)
Q Consensus 165 --------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~ 217 (301)
+++.+..++.++...|++..|+.+|..+....+ .+..+|+.+|.||..+|.
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-- 464 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-- 464 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh--
Confidence 123344678888888999999999988887655 335689999999999999
Q ss_pred cHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 218 NILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
++.|+.+|.+++.+.|+ +..+...|+..+..+|+.++
T Consensus 465 -~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 465 -YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEK 501 (895)
T ss_pred -HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHH
Confidence 99999999999999996 89999999999998888654
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.67 E-value=1.2e-14 Score=114.22 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=158.9
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (301)
...+...+-......|++..+ ..++..+...|+-+.+..+..++...+|.+..+...+|...+..|++..|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 344666666777788999888 8888899999999999999999888899999988889999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (301)
...|+++.+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..++..|+ ++.|..++..+...-+. +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d~~ 203 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-DSR 203 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-chH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999887664 888
Q ss_pred HhhhHHHHHHHHHhhhccCCccccc
Q 022205 240 ALFGICLCSSAIAQLTKGRNKEDKE 264 (301)
Q Consensus 240 ~~~~l~~~~~~l~~~~~~~~~~~~~ 264 (301)
+--+++++....+++..+.+...++
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999988877655544333
No 58
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=1.3e-14 Score=117.85 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=170.3
Q ss_pred CChHHHHHHHHHHhcCCCCc---------CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKR---------SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGIL 107 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~ 107 (301)
.+.+.-++++..++...+.. ...+|++..+++..|.+|+..|+-..|+.-+.+++..-|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 33445556677666544332 345888999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH---HHH------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPV---LHK------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~---~~~------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (301)
++.+|.+++|...|..++..+|++.. +.. .....++..|+..-++......++..|-++..+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 99999999999999999999996532 222 223344567899999999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+.||...|+...||..++.+-++..++...++.++.+++..|+ .+.++...+.+++++|+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999999999999999999 99999999999999997
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2.1e-13 Score=119.37 Aligned_cols=177 Identities=12% Similarity=0.054 Sum_probs=141.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---------------------- 126 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------------------- 126 (301)
..+..+...|+++.|+..++++.+..|+++.++..++.++...|++++|+..+....+
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4477788888888888888888888888888888888888888888888855554442
Q ss_pred --------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHH
Q 022205 127 --------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 186 (301)
Q Consensus 127 --------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~ 186 (301)
..|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al 314 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLE 314 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHH
Confidence 22345666777788888888889999998888884 4456544444444 348889999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
...++.++..|+++..+..+|.++...++ +++|.++|+++++..|+ ...+..++.++...|+
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPD--AYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999 99999999999999984 4455678888888776
No 60
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.66 E-value=5.7e-15 Score=109.61 Aligned_cols=119 Identities=18% Similarity=0.054 Sum_probs=111.8
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (301)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (301)
..+++++...|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
++..++.+|.++...|++++|+..|+++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999887643
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.66 E-value=2.1e-14 Score=112.86 Aligned_cols=167 Identities=14% Similarity=0.042 Sum_probs=156.8
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+|+...+ ..++..+...|+-+.+..+..++...+|.+..+....|...++.|+|.+|+..++++....|+++.+|..+|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 6777777 888899999999999999999999889999888888999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.+.-..|+ +
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~---~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD---F 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---h
Confidence 9999999999999999999999999999999999999999999999999999999888899999999999999999 9
Q ss_pred HHHHHHHHHHh
Q 022205 220 LLAKKYYASTI 230 (301)
Q Consensus 220 ~~A~~~~~~al 230 (301)
++|...-.+-+
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99987765433
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=2.2e-14 Score=124.08 Aligned_cols=168 Identities=15% Similarity=0.017 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW----AEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
........+..+...|++++|...+++++..+|++..++.. +..+...|++ ..+...+......+|....+...+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34455556777888888888888888888888888766654 4444444443 444444443335667777777788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcC
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLG 214 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~ 214 (301)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.++++++...|.++ ..+..+|.++...|
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 88888899999999999999999998888888899999999999999999999888876443 24567888888999
Q ss_pred CCCcHHHHHHHHHHHhcccC
Q 022205 215 GVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p 234 (301)
+ +++|+..|++++...|
T Consensus 201 ~---~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 201 D---YEAALAIYDTHIAPSA 217 (355)
T ss_pred C---HHHHHHHHHHHhcccc
Confidence 9 9999999988877666
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.4e-14 Score=118.71 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=176.7
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
.....+++++|..+-..|+.++|+.+|-++....-++..+++.++.+|..+.+..+|++++.++...-|+++.++..+|.
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 34567888889999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
+|-+.|+-.+|.+++-...+.+|.+.++.--||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+ |+
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yq 677 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQ 677 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HH
Confidence 999999999999999999999999999999999999999999999999999999999999989999999999999 99
Q ss_pred HHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 221 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.|...|+..-+..|. +...+--|......+|-
T Consensus 678 ka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 999999999999996 88888777777777764
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2e-13 Score=110.04 Aligned_cols=212 Identities=15% Similarity=0.070 Sum_probs=175.1
Q ss_pred hcCCccHHHHHHHHHHhccCCh----------------HHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChH
Q 022205 18 DNGGGGAWEYLCLVKKLKVRRP----------------DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLD 81 (301)
Q Consensus 18 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 81 (301)
.++++-|.+.+-.+-..++... +.++.+...++.. ++-...+..-+..++|.-|+..|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3455556666555554444333 3444444444433 12223356778889999999999999
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
.|..+|..+.+...--..+...+..+|....+|++|++..++..+..+.. +..+..++..+....+.+.|...+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999998655567788899999999999999999999999988765 3467888888899999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++++.+|++..+-..+|.++...|+|+.|++.++.+++.+|+. +.+.-.+..||..+|+ .++...++.++.+..++
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~---~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK---PAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999987 5688889999999999 99999999999998875
No 65
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.64 E-value=4.9e-14 Score=129.36 Aligned_cols=143 Identities=8% Similarity=-0.084 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|....++..+|......|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999999999999999999999999999999999887655544
No 66
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.63 E-value=1e-13 Score=112.68 Aligned_cols=192 Identities=15% Similarity=0.018 Sum_probs=173.5
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+|....-...+|..++-.|++..|+..|..++..+|++-.+++..|.+|..+|+..-|+..+.++++..|+...+....|
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 56677778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH------------HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADH---DAWR------------ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~------------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
.++.++|.+++|+..|+.++..+|++. ++.. .....++..|++..|+.+..+.+++.|=+...+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~ 193 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ 193 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence 999999999999999999999999652 2222 2333445668999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
..+.||...|+ ...|+..++.+-++..+ +...+|-+...+..+++..
T Consensus 194 ~Rakc~i~~~e---~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 194 ARAKCYIAEGE---PKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHHHHhcCc---HHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHH
Confidence 99999999999 99999999999999986 8899998888888887744
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1e-13 Score=115.17 Aligned_cols=181 Identities=17% Similarity=0.090 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
-|+--+...+..+++..|+.+-++.++.+|.+..++.+.|.++...|+.++|+-.|+.+....|.....|..+..+|...
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 34444666788889999999999999999999999999999999999999999999999999999988888888888887
Q ss_pred CChhHH------------------------------------HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205 146 GNFPTA------------------------------------IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 146 g~~~~A------------------------------------~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 189 (301)
|++.+| .++++++++++|....+...++.++...|.+.+++..+
T Consensus 382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 775554 45555566667777777778888899999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
++.+...|+ ...+..+|.++...+. +++|+.+|..|++++|. +.++.-|+-..--..
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhcc
Confidence 999988775 4568899999999999 99999999999999996 888888887544443
No 68
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.6e-14 Score=119.82 Aligned_cols=172 Identities=16% Similarity=0.059 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV------- 133 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 133 (301)
|.....-...+.++...|++++|....-.++++++.+..++++.|.++...++.+.|+..|++++..+|+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 3344444455788888999999999999999999999999999999999999999999999999999998643
Q ss_pred -----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 134 -----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 134 -----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
.+..-|.-.++.|++..|.+.|..+|.++|++ ...|.+.|.+....|+..+|+..+..++.++|....++.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 66777888899999999999999999999987 446788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..|.|+..+++ |++|++.|+++++...+
T Consensus 326 ~ra~c~l~le~---~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALEK---WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence 99999999999 99999999999998764
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.62 E-value=1.6e-14 Score=106.36 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=91.2
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 126 EDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 126 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
... ++..+..+.+|..+...|++++|+..|+-+...+|.++..|++||.++...|+|++|+.+|.+++.++|++|.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 6677788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
+.|.|++..|+ .+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 88888888888 888888888888876
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-13 Score=118.37 Aligned_cols=170 Identities=18% Similarity=0.115 Sum_probs=141.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 149 (301)
+|..+...++++.|+.++.+++..+-. ..+.......++++.......-.+|.-..-...-|..++..|+|.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 344555556677777777776654322 344445555666666666666677777777777899999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
.|+..|.+++..+|+++..|.+.|.||...|.+..|++..+.+++++|+....|.+-|.++..+.+ |+.|.+.|+++
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hcccCCCchhHhhhHHHHHHHH
Q 022205 230 IDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 230 l~~~p~~~~~~~~~l~~~~~~l 251 (301)
++++|. +..+.-++..|...+
T Consensus 453 le~dp~-~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 453 LELDPS-NAEAIDGYRRCVEAQ 473 (539)
T ss_pred HhcCch-hHHHHHHHHHHHHHh
Confidence 999996 888888888888765
No 71
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.6e-14 Score=115.60 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=104.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
+..-|.-+...++|.+|+..|.++|..+|.++..|.+.+.+|.++|.++.|++.++.++.++|+...+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
++++|+..|+++|.++|++..++.+|..+-..++.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998888888877777
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-13 Score=122.28 Aligned_cols=196 Identities=15% Similarity=0.056 Sum_probs=171.9
Q ss_pred CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 022205 55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-- 131 (301)
Q Consensus 55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-- 131 (301)
.....+|.++.+.+.++..+...++.+.|....+.+++.++ +++.+|.+++.++..++++.+|+.....++...|+|
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 34455777888899999999999999999999999999954 788999999999999999999998887776544431
Q ss_pred --------------------------------------------------------------------------------
Q 022205 132 -------------------------------------------------------------------------------- 131 (301)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (301)
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence
Q ss_pred ---------------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205 132 ---------------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 190 (301)
Q Consensus 132 ---------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 190 (301)
...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|++.+|...|.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 12455677777888889999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH--HHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK--YYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 191 ~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
.++.++|+++.....+|.++...|+ ..-|.+ .+..+++++|. +..+||++|-+....|+.
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccch
Confidence 9999999999999999999999998 666666 99999999996 999999999999998873
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=4.1e-13 Score=116.23 Aligned_cols=195 Identities=14% Similarity=-0.005 Sum_probs=154.3
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
+|+.+..+..+|..+...|+.+.+...+.++....|.+ .......+.++...|++++|...+++++..+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888889999988888899999888888888877743 445677888889999999999999999999999887766
Q ss_pred HHHHHHHHcCC----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 137 RRVAIAKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 137 ~l~~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
. +..+...|+ ...+...+......+|..+..+..+|.++...|++++|+..+++++.++|+++.++..+|.+++.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 555554444 44444444443355667777778888999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHHHHHhhhccC
Q 022205 213 LGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
.|+ +++|+.++++++...|. .....++.++.++...|+...+.
T Consensus 161 ~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 161 QGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 999 99999999999988763 22345678888888877766543
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.1e-12 Score=114.98 Aligned_cols=167 Identities=13% Similarity=0.040 Sum_probs=139.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH------------------------------------------hCCCc
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK------------------------------------------QFPES 97 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------------------------------~~p~~ 97 (301)
+|+++.++..++..+...|++++|+.++..+.+ ..|++
T Consensus 183 ~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 183 APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence 677777788888888888888888755554442 22456
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
+.+...++..+...|+.++|...++++++..| ++......+.+ ..++.++++..+++.++.+|+++..+..+|.++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66777889999999999999999999999544 55544444443 4599999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
..++|++|..+|+++++..|++.. +..++.++...|+ .++|..+|++++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~---~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK---PEEAAAMRRDGLMLT 391 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence 999999999999999999998655 5689999999999 999999999998875
No 75
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=1.7e-13 Score=126.99 Aligned_cols=186 Identities=11% Similarity=-0.009 Sum_probs=159.7
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----- 132 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 132 (301)
..+|.+..++..++..+...+++++|+.+++.+++.+|+...+++..|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 447889999999999999999999999999999999999999999999999999887777665 5555544444
Q ss_pred --------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---
Q 022205 133 --------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--- 195 (301)
Q Consensus 133 --------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--- 195 (301)
.+++.+|.||..+|+.++|...++++++.+|+++.+..++|..|... +.++|+.++.+|+..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999 999999999988754
Q ss_pred -----------------CCCCHHH--------HHHHH------------HHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205 196 -----------------QPTVPLY--------HLAYA------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (301)
Q Consensus 196 -----------------~p~~~~~--------~~~la------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (301)
+|++... ...++ ..|...++ |++++..+..+++.+|. |.
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n~ 257 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-NN 257 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-ch
Confidence 3444322 12223 55666667 99999999999999996 99
Q ss_pred hHhhhHHHHHHH
Q 022205 239 KALFGICLCSSA 250 (301)
Q Consensus 239 ~~~~~l~~~~~~ 250 (301)
.+.++++.|+..
T Consensus 258 ~a~~~l~~~y~~ 269 (906)
T PRK14720 258 KAREELIRFYKE 269 (906)
T ss_pred hhHHHHHHHHHH
Confidence 999999999984
No 76
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.3e-12 Score=114.86 Aligned_cols=180 Identities=13% Similarity=0.066 Sum_probs=134.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL----------------------- 125 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------------------- 125 (301)
..+..++..|+++.|...++.+.+..|+++.++..++.++...|++++|...+.+..
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 346666666777777777777666667666666666666666666666665554444
Q ss_pred ---------------hcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHcccHHH
Q 022205 126 ---------------EDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMYKQ 184 (301)
Q Consensus 126 ---------------~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~lg~~~~~~~~~~~ 184 (301)
...| +++.++..++..+...|++++|...++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 3344 4677788888888999999999999999999999887532 223333444678889
Q ss_pred HHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCCCcHHHHHHHHH--HHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 185 AAFCYEELILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 185 A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
++..++++++..|+++ .....+|.+++..|+ +++|.++|+ .+++..|+ .. .+..++.++..+|+
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~-~~-~~~~La~ll~~~g~ 385 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD-AN-DLAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC-HH-HHHHHHHHHHHcCC
Confidence 9999999999999999 888899999999999 999999999 57778885 43 35588888888776
No 77
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=7.7e-13 Score=115.68 Aligned_cols=206 Identities=12% Similarity=0.026 Sum_probs=172.7
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
.+.-++...+....+.. .|.....|...+......|+...|..++..+++..|++..+|+..-.+.+....++
T Consensus 563 hgt~Esl~Allqkav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred cCcHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence 33444555555555544 56666677777888888899999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.|..+|.++-...|+ ..+|+..+.+...+++.++|+.+++++++.+|+.+..|..+|.++.+.++.+.|...|...++.
T Consensus 636 raR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 636 RARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998886665 5678888888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.|..+..|..++.+-...|. .-.|...+.++.-.+|. +...|......-.+.|+
T Consensus 715 cP~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK-NALLWLESIRMELRAGN 768 (913)
T ss_pred CCCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCC
Confidence 99999999999999999998 99999999999999996 77777766655555554
No 78
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=6.1e-13 Score=116.29 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
..+|+.-+......++.++|+.+++.+++.+|+.+..|.++|.++.++++.+.|...|...++..|..+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 34566666667778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH----------------------
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---------------------- 201 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------------- 201 (301)
..|..-.|...+.++.-.||.++..|...-.+-.+.|+.+.|.....+||+..|.+..
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988776543
Q ss_pred --------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 202 --------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 202 --------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
++...|..++.... ++.|.+.|.++++.+|+ +..+|..+..-+...|
T Consensus 811 kkce~dphVllaia~lfw~e~k---~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKK---IEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG 865 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHH---HHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence 55567778888888 99999999999999997 5555544444444444
No 79
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.59 E-value=8.5e-14 Score=102.50 Aligned_cols=109 Identities=14% Similarity=-0.015 Sum_probs=92.1
Q ss_pred HHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH
Q 022205 89 VLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 167 (301)
Q Consensus 89 ~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 167 (301)
.+.... ++.....+.+|..+...|++++|...|+-+...+|.+...|++||.++..+|++.+|+..|.+++.++|++|.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 344455 6677777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
.++++|.|++..|+.+.|.++|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 888888888888888888888888887763
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.5e-14 Score=113.70 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
-+..-|.-+...++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|.++|.+|+.+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 45667888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 214 GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
|+ +++|+..|+++++++|+ +...+-+|..+...+++..
T Consensus 163 gk---~~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GK---YEEAIEAYKKALELDPD-NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred Cc---HHHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhcCCC
Confidence 99 99999999999999996 8877888888888887744
No 81
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=2e-12 Score=109.96 Aligned_cols=154 Identities=21% Similarity=0.156 Sum_probs=133.3
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
|.....++-.|...+..|+++.|+..+..+++..|+++..+...+.+++..++..+|.+.+++++..+|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34566777778888899999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
++...|++.+|+..++..+..+|+++..|..||..|..+|+..+|. ...++.++..|+ ++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~---~~ 442 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGR---LE 442 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCC---HH
Confidence 9999999999999999999999999999999999998888877664 456778888888 99
Q ss_pred HHHHHHHHHhcccC
Q 022205 221 LAKKYYASTIDLTG 234 (301)
Q Consensus 221 ~A~~~~~~al~~~p 234 (301)
+|+..+.++-+...
T Consensus 443 ~A~~~l~~A~~~~~ 456 (484)
T COG4783 443 QAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999988887753
No 82
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=3.2e-12 Score=112.45 Aligned_cols=239 Identities=9% Similarity=-0.084 Sum_probs=175.8
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCC
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGL 113 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~ 113 (301)
..++++.+.......... .|.....+...|.+....|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~-------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH-------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 455555555555443332 444444555668889999999999999999999999875 566667999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------------------------------
Q 022205 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-------------------------------- 161 (301)
Q Consensus 114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------------------------------- 161 (301)
++.|...++...+..|+++.++..++.++...|++++|...+.+..+.
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999999999999887777665432
Q ss_pred ------cC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 162 ------FM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH--LAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 162 ------~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
.| +++..+..+|..+...|++++|...++++++..|++.... ..........++ ...+.+.++++
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHH
Confidence 23 3667777888888999999999999999999999887532 222222333456 88899999999
Q ss_pred hcccCCCch--hHhhhHHHHHHHHHhhhccCCcccc--cc--hHHHHHHHHHHHHHHHhhCC
Q 022205 230 IDLTGGKNT--KALFGICLCSSAIAQLTKGRNKEDK--ES--PELQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 230 l~~~p~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~~~ 285 (301)
++..|+ +. .....+|.++.+.++..++.....+ .. ...... ...+.+.+.+.+.
T Consensus 326 lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~ 385 (409)
T TIGR00540 326 AKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD 385 (409)
T ss_pred HHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC
Confidence 999996 77 6777888888887776655543331 10 111112 2356666666555
No 83
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=1.6e-12 Score=117.43 Aligned_cols=164 Identities=18% Similarity=0.094 Sum_probs=148.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.+...|...+-.|++++|..++..+++.+|.++.+|..+|.+|...|+.++|...+-.|-..+|.+...|..++.....+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 33444777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCCCcHH
Q 022205 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-----LYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~~~ 220 (301)
|++++|+-+|.+++..+|.+....+..+.+|.+.|+...|...|.+++...|... ..-...+..+...++ -+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e 297 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RE 297 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HH
Confidence 9999999999999999999999999999999999999999999999999998321 233445777888888 89
Q ss_pred HHHHHHHHHhcc
Q 022205 221 LAKKYYASTIDL 232 (301)
Q Consensus 221 ~A~~~~~~al~~ 232 (301)
.|.+.+..++..
T Consensus 298 ~a~~~le~~~s~ 309 (895)
T KOG2076|consen 298 RAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHhh
Confidence 999999999884
No 84
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4e-12 Score=99.41 Aligned_cols=153 Identities=17% Similarity=0.086 Sum_probs=136.3
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
|....+....|..+-..|++++|+++++..+..+|.+..++-..-.+...+|+.-+|++.+...++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55555555567777778999999999999999999998888887788888999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
+|...|+|.+|.-++++.+-.+|.++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+..+....
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 577899999999999998888887775554433
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=7e-13 Score=113.58 Aligned_cols=191 Identities=16% Similarity=0.056 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHH
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-------LHKR 137 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~ 137 (301)
.....+|...+...++..|+..+..++..+ .+...+...+.+++..|.+.+++..+.++++....... +...
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345577899999999999999999999999 88888889999999999999999999998886654322 4445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCC--------------------------CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMA--------------------------DHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
+|..+...++++.++.+|.+++..... -...-..-|..++..|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 677888889999999999998875432 122333569999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCc
Q 022205 192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 260 (301)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~ 260 (301)
++..+|+++..+.+.|-||.++|. +..|+.....+++++|+ +.++|..-+.|+..+.+..++...
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGE---YPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999995 999999999999999987765433
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.54 E-value=1.7e-12 Score=114.23 Aligned_cols=194 Identities=18% Similarity=0.141 Sum_probs=158.7
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---- 127 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 127 (301)
.|........+|..+...+++++|+.+|++++... |....++..+|..|...|++++|..++++++++
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 45555566678999999999999999999999853 334557888999999999999999999999873
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.|.-...+..++.++..++++++|+.++++++++. |.-+..+.+||.+|+.+|++++|..+|++++.+
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 23334578889999999999999999999998763 233567899999999999999999999999976
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc----CC--CchhHhhhHHHHHHHHHhhhc
Q 022205 196 Q--------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT----GG--KNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 196 ~--------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~----p~--~~~~~~~~l~~~~~~l~~~~~ 256 (301)
. +........+|..+...++ +.+|...|.+++.+. |+ +-...+.+|+-+|..+|+.++
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~---~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKK---YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence 4 3335678899999999999 999999998887662 22 245667799999999998443
No 87
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.54 E-value=6.2e-12 Score=106.96 Aligned_cols=180 Identities=18% Similarity=0.062 Sum_probs=150.2
Q ss_pred cCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022205 51 NDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (301)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 130 (301)
.........++.............+....-..+-..+-+..+ |....+++..+..+...|.+++|+..++..+...|+
T Consensus 261 ~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~ 338 (484)
T COG4783 261 EQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD 338 (484)
T ss_pred HhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC
Confidence 333344444444444444444433333333333333333333 778889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
|+..+...+.++...|+.++|.+.+++++..+|+.+..+.++|.++++.|++.+|+..+...+..+|+++..|..+|..|
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay 418 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY 418 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..+|+ ..+|...+-+...+..+
T Consensus 419 ~~~g~---~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 419 AELGN---RAEALLARAEGYALAGR 440 (484)
T ss_pred HHhCc---hHHHHHHHHHHHHhCCC
Confidence 99999 99999999999888763
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=5.2e-13 Score=114.72 Aligned_cols=105 Identities=15% Similarity=-0.006 Sum_probs=47.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
|..++..|+++.|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEI 175 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~ 175 (301)
|+..|+++++++|+++.+...++.+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4444444444444444444333333
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=4.6e-12 Score=110.72 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=167.9
Q ss_pred HHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 022205 41 KVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKA 120 (301)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 120 (301)
.-+.....++.. .|+....+...|..+...|+-++|..+...++..++.+...|..+|.++....+|++|+++
T Consensus 25 kgLK~~~~iL~k-------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 25 KGLKLIKQILKK-------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred hHHHHHHHHHHh-------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345555666665 6777778888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---C
Q 022205 121 YSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ---P 197 (301)
Q Consensus 121 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p 197 (301)
|+.|+..+|+|..++..++.+..++|+++-....-.+.++..|..-..|..++..+.-.|++..|....+...+.. |
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877666443 2
Q ss_pred CCHH---------------------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205 198 TVPL---------------------------------------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (301)
Q Consensus 198 ~~~~---------------------------------------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (301)
+... .....|.++..+++ +++|...|...+..+|+ +.
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rnPd-n~ 253 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERNPD-NL 253 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhCch-hH
Confidence 2111 22234667777778 99999999999999996 88
Q ss_pred hHhhhHHHHHH
Q 022205 239 KALFGICLCSS 249 (301)
Q Consensus 239 ~~~~~l~~~~~ 249 (301)
..+.++-.|+.
T Consensus 254 ~Yy~~l~~~lg 264 (700)
T KOG1156|consen 254 DYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHHH
Confidence 88888777775
No 90
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=5.7e-13 Score=114.52 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 216 (301)
..|...+..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.+++.+|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~- 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE- 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-
Confidence 3455555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+++|+.+|+++++++|+ +..+...+..|...+.
T Consensus 86 --~~eA~~~~~~al~l~P~-~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 86 --YQTAKAALEKGASLAPG-DSRFTKLIKECDEKIA 118 (356)
T ss_pred --HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 66666666666666664 5555555555555553
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.52 E-value=2.8e-11 Score=113.42 Aligned_cols=192 Identities=14% Similarity=0.020 Sum_probs=156.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHH
Q 022205 26 EYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG 105 (301)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a 105 (301)
.+...+.....++...++.....++.. +|........++..+...|+.++|+.++++++...|........+|
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~-------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKA-------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh-------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 344555555666677777777777766 6655322226777778889999999999999943344444455558
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A 185 (301)
.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHH
Confidence 899999999999999999999999999999999999999999999999999999999985554 5566666667777779
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
+..+++++..+|++..++..+..++...|- ...|.+...+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~ 228 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHh
Confidence 999999999999999999999999999999 8888876665
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=1.2e-12 Score=119.06 Aligned_cols=192 Identities=15% Similarity=0.063 Sum_probs=172.3
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHH
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLH 135 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~ 135 (301)
.+++....+|..+|..|....+...|.++|.++...+|.+..+.-..+..|....+++.|....-.+-+..|-.. ..|
T Consensus 486 rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 447778888889999998888889999999999999999999999999999999999999998777766666543 356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|.
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+.+|+..+...+..... ...+.-|++.|+.++..
T Consensus 646 ---Ykeald~l~~ii~~~s~-e~~~q~gLaE~~ir~ak 679 (1238)
T KOG1127|consen 646 ---YKEALDALGLIIYAFSL-ERTGQNGLAESVIRDAK 679 (1238)
T ss_pred ---HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 99999999999988875 88888999999888765
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=9.7e-13 Score=116.95 Aligned_cols=132 Identities=27% Similarity=0.276 Sum_probs=74.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 148 (301)
..+..+...++.++|..++.++-..+|..+.++++.|.++...|.+.+|.+.|..++..+|+++.....+|.++...|+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~ 734 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP 734 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHH--HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 149 PTAIE--WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 149 ~~A~~--~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
.-|.. .+..+++.+|.++.+|+.+|.++...|+.++|..||+.++++.+.+|
T Consensus 735 ~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 735 RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 44444 55555555555555555555555555555555555555555555443
No 94
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.6e-12 Score=105.47 Aligned_cols=181 Identities=13% Similarity=0.031 Sum_probs=151.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
|+++.-...+..+..++-......|++......+|.+++..|++++|+..|+++...+|.+.......|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 44444334444555556666667789999999999999999999999999999999999999988888999999999988
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
-..+....+........-|+.-|...+..+++..|+.+-++++..+|.+..++...|.++..+|+ .++|+-+|+.|.
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hHHHHHHHHHHH
Confidence 88888888888777777888888888888999999999999999999998888889999999999 999999999999
Q ss_pred cccCCCchhHhhhHHHHHHHHHhhh
Q 022205 231 DLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 231 ~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
.+.|- ..+.|-||.-||...+.+.
T Consensus 362 ~Lap~-rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 362 MLAPY-RLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hcchh-hHHHHHHHHHHHHhhchHH
Confidence 99884 8888888888887766543
No 95
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.3e-13 Score=109.76 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------------H
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------D 167 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~ 167 (301)
+..+.+.|+...|++++|.+.--..++.++.+.++++-.|.++...++.+.|+..|++++.++|++. .
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence 4445566777778888888888888888888888888889999999999999999999999988773 3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 243 (301)
.|-.-|.-.++.|++..|.++|..+|.++|++. ..|.+.|.+...+|+ ..+|+.....++.++|. ++.++..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yikall~ 326 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKALLR 326 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHHHHH
Confidence 566778888888999999999999999998763 467888888889999 99999999999999985 8999999
Q ss_pred HHHHHHHHHhhhc
Q 022205 244 ICLCSSAIAQLTK 256 (301)
Q Consensus 244 l~~~~~~l~~~~~ 256 (301)
-+.|+.-++++..
T Consensus 327 ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 327 RANCHLALEKWEE 339 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887543
No 96
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.47 E-value=4.1e-11 Score=97.27 Aligned_cols=162 Identities=14% Similarity=0.007 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK 136 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 136 (301)
.+..++..|...+..|++++|+..|+.++..+|..+.+. +.+|.++...+++++|+..+++.++.+|+++. +++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 455677789999999999999999999999999876554 88999999999999999999999999888754 788
Q ss_pred HHHHHHHHcC---------------C---hhHHHHHHHHHHHhcCCCHH---H--------------HHHHHHHHHHccc
Q 022205 137 RRVAIAKAQG---------------N---FPTAIEWLNKYLETFMADHD---A--------------WRELAEIYVSLQM 181 (301)
Q Consensus 137 ~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~---~--------------~~~lg~~~~~~~~ 181 (301)
.+|.++...+ + ..+|+..|++.++..|++.- + -+..|..|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 8888765443 1 24688999999999998832 1 1357888999999
Q ss_pred HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 182 YKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 182 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
|..|+.-++.++...|+. +.++..++.+|..+|. .++|.....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~ 236 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVAK 236 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHH
Confidence 999999999999988866 4688889999999999 888877654
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=2.3e-11 Score=106.49 Aligned_cols=167 Identities=15% Similarity=0.143 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
-..++..+.-++..++|...++.++.+++.+|+++....+.|..+..+|+-++|....+.++..++.+...|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34566668888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
...+|++|+++|+.|+...|+|...|..++.+..++++++.....-.+.++..|.....|..++..+...|+ +..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhccc
Q 022205 224 KYYASTIDLT 233 (301)
Q Consensus 224 ~~~~~al~~~ 233 (301)
...+...+..
T Consensus 164 ~il~ef~~t~ 173 (700)
T KOG1156|consen 164 EILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHhh
Confidence 8887776654
No 98
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.45 E-value=2.4e-11 Score=96.38 Aligned_cols=157 Identities=20% Similarity=0.164 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK 136 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 136 (301)
....++..|...+..|++.+|+..|+.+...+|.+ +.+.+.+|.++...|+++.|+..+++.+...|+++. +++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45567788999999999999999999999999854 567889999999999999999999999999988754 788
Q ss_pred HHHHHHHHcC-----------ChhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHHcccHHHHHHH
Q 022205 137 RRVAIAKAQG-----------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAFC 188 (301)
Q Consensus 137 ~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~ 188 (301)
.+|.++.... ...+|+..|+..+...|+++.+ -+.+|..|++.|.|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876543 3458999999999999998322 23568888888888888888
Q ss_pred HHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHH
Q 022205 189 YEELILSQPTVP---LYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 189 ~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A 222 (301)
++.+++..|+.+ .++..++.++..+|. .+.|
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~---~~~a 197 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGL---KQAA 197 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCC---hHHH
Confidence 888888888775 467888888888888 6643
No 99
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.45 E-value=4.2e-12 Score=112.43 Aligned_cols=183 Identities=15% Similarity=0.088 Sum_probs=141.8
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK--- 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--- 136 (301)
-|..|..-..++..++..|-..+|+.++++.-. |.....||...|+..+|.....+-++. |.++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem--------w~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM--------WDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH--------HHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhh
Confidence 456677777777777777777777777766543 334455666666666666666666663 33333333
Q ss_pred -------------------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 137 -------------------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 137 -------------------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
.+|......++|.++...++..++++|-.+..|+.+|.+..+.++++.|..+|..
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 3333344468899999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
++.++|++..+|.+++.+|...++ -.+|...+++|++-+-. +...|-+..++....+.++
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHH
Confidence 999999999999999999999999 99999999999998864 8888877777777766544
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.40 E-value=1.7e-11 Score=88.52 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE 174 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~ 174 (301)
++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|+.++..+|++ +.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444444444444444444444444333 2334444444444444444444444444444432 333444444
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
++...|++++|+.++.+++...|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 44444444444444444444444443
No 101
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.4e-11 Score=98.19 Aligned_cols=120 Identities=16% Similarity=0.011 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHH
Q 022205 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCY 189 (301)
Q Consensus 113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~ 189 (301)
..+.-+.-++..+..+|++..-|..||.+|+.+|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35566677788888999999999999999999999999999999999999999999999998877653 356888899
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++++..+|++..+.+.+|..++..|+ +.+|+..++..++..|.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999 99999999999998885
No 102
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.38 E-value=1.3e-11 Score=84.75 Aligned_cols=98 Identities=23% Similarity=0.259 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|+.+|++++...|.++.++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34566666666677777777777777666666666667777777777777777777777776676666667777777777
Q ss_pred CCCCcHHHHHHHHHHHhcccC
Q 022205 214 GGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 214 ~~~~~~~~A~~~~~~al~~~p 234 (301)
|+ ++.|..++.++++.+|
T Consensus 82 ~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GK---YEEALEAYEKALELDP 99 (100)
T ss_pred Hh---HHHHHHHHHHHHccCC
Confidence 77 7777777777666655
No 103
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=3e-12 Score=83.09 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcccC
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p 234 (301)
++..|..+|.+++..|++++|+.+|+++++++|+++.+++++|.++..+| + +++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 34555556666666666666666666666666666666666666666655 5 5666666666665555
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.38 E-value=6e-11 Score=88.95 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=66.9
Q ss_pred HhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCh
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNF 148 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~ 148 (301)
+..++...+...++.+...+|++ ..+.+.+|.++...|++++|...|+.++...|+. ..+..+++.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34566666666666666666655 3344556666666666666666666666655443 22555566666666666
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
++|+..++. +...+..+.++..+|+++...|++++|+..|+++
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666644 2223333445555666666666666666666554
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.37 E-value=3.2e-11 Score=87.10 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHH
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLA 205 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 205 (301)
+..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+.+|+.++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999999877 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205 206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (301)
Q Consensus 206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (301)
+|.++...|+ +++|..+|.++++..|+ +.
T Consensus 82 ~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~ 110 (119)
T TIGR02795 82 LGMSLQELGD---KEKAKATLQQVIKRYPG-SS 110 (119)
T ss_pred HHHHHHHhCC---hHHHHHHHHHHHHHCcC-Ch
Confidence 9999999999 99999999999999996 44
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.8e-11 Score=96.42 Aligned_cols=121 Identities=20% Similarity=0.064 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN---FPTAIEWLN 156 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 156 (301)
.+.-+.-++..+..+|++..-|.++|.+|+.+|+++.|...|.++++..|++++++..+|.++....+ ..++...|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 45666778888889999999999999999999999999999999999999999999999998887643 568999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
+++..+|.++.+.+.||..++..|+|.+|+..++..+...|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999887654
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=5e-12 Score=82.03 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCC
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP 197 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p 197 (301)
++.+|..+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56778888888888888888888888888888888888888888888888 68888888888888877
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=2.3e-11 Score=110.98 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 022205 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (301)
.+...|...|-++++.+|....++..+|.+|....+...|..+|+++.+.|+.+..++...+..|....+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHhcCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 158 YLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 158 ~l~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+-+..|.. ...|..+|..|...+++.+|+..|+.++..+|.+.+.|..+|.+|...|+ +..|++.|.++..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence 66666643 45678899999999999999999999999999999999999999999999 99999999999999996
Q ss_pred CchhHhhhHHHHHHHHHhh
Q 022205 236 KNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 236 ~~~~~~~~l~~~~~~l~~~ 254 (301)
..-+.|-.+.....+|+.
T Consensus 629 -s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhH
Confidence 777777777777766663
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.36 E-value=1.9e-11 Score=83.87 Aligned_cols=99 Identities=25% Similarity=0.214 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46678888888899999999999999888888888888999999999999999999999998888888889999999999
Q ss_pred ccHHHHHHHHHHHHhhCCC
Q 022205 180 QMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~ 198 (301)
|+++.|..++.+++...|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999988887763
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.36 E-value=5.5e-11 Score=98.91 Aligned_cols=165 Identities=15% Similarity=0.040 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
+..+..-.|.+++..|++++|++++... ++.....+...++..+++++.|.+.++.+-+.+.+...+...-+.+.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3344445566777778888888877653 55667777778888888888888888888777766665555555555
Q ss_pred HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH-
Q 022205 143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI- 219 (301)
Q Consensus 143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~- 219 (301)
...| .+.+|..+|++....+|.++..++.++.++..+|+|++|...+++++..+|.++.++.+++.+...+|+ .
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~ 252 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PT 252 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TC
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---Ch
Confidence 5555 578888888888877777888888888888888888888888888888888888888888888888888 6
Q ss_pred HHHHHHHHHHhcccCC
Q 022205 220 LLAKKYYASTIDLTGG 235 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~ 235 (301)
+.+.+++.+.-..+|+
T Consensus 253 ~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHCHHHTTT
T ss_pred hHHHHHHHHHHHhCCC
Confidence 4555666666666774
No 111
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.35 E-value=9.8e-11 Score=92.84 Aligned_cols=155 Identities=18% Similarity=0.172 Sum_probs=123.9
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW 169 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 169 (301)
.++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.++...|++++|+..+++.++.+|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 356778899999999999999999999999988875 4589999999999999999999999999999988 4678
Q ss_pred HHHHHHHHHcc-----------cHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCCCcHHH
Q 022205 170 RELAEIYVSLQ-----------MYKQAAFCYEELILSQPTVPLY-----------------HLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 170 ~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~-----------------~~~la~~~~~~~~~~~~~~ 221 (301)
+.+|.+++... ...+|+..|+..+...|+++.+ -+.+|..|++.|. +..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~a 159 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHH
Confidence 88898876543 3569999999999999988531 2346888999999 999
Q ss_pred HHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205 222 AKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 222 A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~ 253 (301)
|+..++.+++.-|+ ....+++.+..++..+|.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 99999999999997 334677778888888876
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.34 E-value=5.1e-11 Score=91.74 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
.++..+|.++...|++++|+..|++++...|++ +.++.++|.++...|++++|+.+|++++.++|.....+..+|.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 345555666666666666666666665554442 23566666666666666666666666666666666656566655
Q ss_pred HH-------HcCCC----CcHHHHHHHHHHHhcccCC
Q 022205 210 LY-------TLGGV----DNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 210 ~~-------~~~~~----~~~~~A~~~~~~al~~~p~ 235 (301)
+. ..|+. ..+++|+.+|++++..+|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55 44440 0133666666677777775
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=4.5e-11 Score=106.04 Aligned_cols=149 Identities=17% Similarity=0.098 Sum_probs=125.9
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
|........++.++...|-...|+..|++.- .|.....||...|+..+|..+..+-++ .|.++..|..+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 5556667889999999999999999999854 456677888888888888888888888 4445554444433
Q ss_pred ----------------------------HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 175 ----------------------------IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 175 ----------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
.....++|.++.++++..++++|-....|+.+|.+..++++ ++.|..+|
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek---~q~av~aF 542 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK---EQAAVKAF 542 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh---hHHHHHHH
Confidence 33455889999999999999999999999999999999999 99999999
Q ss_pred HHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 227 ASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 227 ~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
.+++.++|+ +..+|.+++-++..+++..+
T Consensus 543 ~rcvtL~Pd-~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 543 HRCVTLEPD-NAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred HHHhhcCCC-chhhhhhhhHHHHHHhhhHH
Confidence 999999996 99999999999999987544
No 114
>PRK11906 transcriptional regulator; Provisional
Probab=99.33 E-value=1.2e-10 Score=99.71 Aligned_cols=162 Identities=10% Similarity=-0.059 Sum_probs=135.6
Q ss_pred HHHHHHHHhCC---ChHHHHHHHHHHH---HhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCH
Q 022205 68 EQVSIAAMDCQ---CLDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDP 132 (301)
Q Consensus 68 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 132 (301)
+..|...+..+ ..+.|+.+|.+++ ..+|+...++..++.+++.. ....+|....+++++.+|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 33466655554 3567899999999 89999999999999998765 245678899999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV-LY 211 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 211 (301)
.++..+|.+....|+++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..+++++.++|.-..+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876543333333 44
Q ss_pred HcCCCCcHHHHHHHHHHHhcc
Q 022205 212 TLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 212 ~~~~~~~~~~A~~~~~~al~~ 232 (301)
.... .++|++.|-+--+.
T Consensus 419 ~~~~---~~~~~~~~~~~~~~ 436 (458)
T PRK11906 419 VPNP---LKNNIKLYYKETES 436 (458)
T ss_pred cCCc---hhhhHHHHhhcccc
Confidence 5556 88899988765443
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.33 E-value=2e-10 Score=86.07 Aligned_cols=117 Identities=23% Similarity=0.191 Sum_probs=103.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~ 183 (301)
..++...+...++..+..+|+. ..+.+.+|.++...|++++|+..|+.++...|+. +.+.+.||.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5789999999999999999998 4578889999999999999999999999988665 457889999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
+|+..++. +.-.+..+.++..+|.++...|+ +++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 99999966 33445567788999999999999 999999999885
No 116
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.33 E-value=1.2e-10 Score=90.10 Aligned_cols=90 Identities=22% Similarity=0.197 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 173 (301)
...+++.+|.++...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++..+|+++..+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34445556666666666666666666666544432 345666666666666666666666666666666666666666
Q ss_pred HHHHHcccHHHHH
Q 022205 174 EIYVSLQMYKQAA 186 (301)
Q Consensus 174 ~~~~~~~~~~~A~ 186 (301)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666665544433
No 117
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.33 E-value=3.1e-09 Score=102.53 Aligned_cols=185 Identities=11% Similarity=0.025 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR 138 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 138 (301)
...|..+...+.+.|++++|..++..+... .| +...+..+...|.+.|++++|...|+.+.+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 345555666666667777777766666542 23 23445555556666677777777777666654 3445566666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 215 (301)
...|.+.|++++|+.+|.+..+. .| +..+|..+...|...|++++|..++..+.+.. +.+...+..+...|.+.|+
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 66777777777777777666654 33 24566666666667777777777776666543 2345566666677777777
Q ss_pred CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+++|...|++.......++...|..+...+.+.++
T Consensus 700 ---~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 700 ---WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 77777777766543221245555555555555444
No 118
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=6e-10 Score=99.27 Aligned_cols=66 Identities=21% Similarity=0.136 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+++.++..|-..|++++|+.++.+++...|+.+..+...|.++-..|+ +.+|...+..|-.+|+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChh
Confidence 3557889999999999999999999999999999999999999999999 99999999999998874
No 119
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.32 E-value=3.3e-10 Score=101.50 Aligned_cols=140 Identities=13% Similarity=0.053 Sum_probs=114.3
Q ss_pred HhCCCchhh--HHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHH
Q 022205 92 KQFPESKRV--GRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN--------FPTAIEWLNKY 158 (301)
Q Consensus 92 ~~~p~~~~~--~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~ 158 (301)
...|.++.+ +++.|.-+...++ +..|+.+|+++++.+|+++.++..++.++..... ...+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344566555 4566776666544 7789999999999999999999888887765422 33455555665
Q ss_pred HHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 159 LET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 159 l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+.. +|.++.++..+|......|++++|...+++++.++| +..+|..+|.++...|+ +++|...|++|+.++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence 553 777888999999999999999999999999999999 58899999999999999 99999999999999996
No 120
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.32 E-value=3.2e-09 Score=102.41 Aligned_cols=185 Identities=12% Similarity=0.013 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAI 141 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 141 (301)
...|..+...|.+.|++++|..+|+.+..... .+...|..+...|.+.|++++|+..|....... .-+...|..+...
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555566666677777777777777665442 245566666666777777777777776665432 1234566666666
Q ss_pred HHHcCChhHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCC
Q 022205 142 AKAQGNFPTAIEWLNKYLET----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 216 (301)
+.+.|++++|..+|.+.... .| +..+|..+..+|.+.|++++|...|+...+.+ +.++..|..+...|.+.|+
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~- 629 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD- 629 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-
Confidence 66677777777776666542 23 24556666666666666666666666666554 3345566666666666666
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+++|...|.+..+..-.++...+..+..++.+.+
T Consensus 630 --~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 630 --WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6666666666655421123334444444444433
No 121
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.31 E-value=1.1e-10 Score=89.97 Aligned_cols=122 Identities=17% Similarity=0.109 Sum_probs=92.3
Q ss_pred ChHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 022205 79 CLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
++..+...+...++..+.+ ...++.+|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555554444433 5567888888888899999999999998776653 4578889999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-------HcccHH-------HHHHHHHHHHhhCCCCH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP 200 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 200 (301)
.+++++..+|..+..+..+|.++. ..|+++ +|+.+|++++..+|.+.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999988888888888888888 666665 66666667777787654
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.31 E-value=5.6e-10 Score=90.71 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=130.6
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW 169 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 169 (301)
.++..++..|......|++++|+..|++++...|..+.+ .+.+|.++...+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456678889999999999999999999999999998765 4899999999999999999999999999988 5678
Q ss_pred HHHHHHHHHcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcC
Q 022205 170 RELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLG 214 (301)
Q Consensus 170 ~~lg~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~ 214 (301)
+.+|.++...+ ...+|+..|+..+...|+... --+..|..|++.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88898764443 135788999999999998753 1234677899999
Q ss_pred CCCcHHHHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205 215 GVDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~ 253 (301)
. +..|+.-++.+++.-|+ ....+++.+..++..+|.
T Consensus 190 ~---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 190 A---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred c---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 9 99999999999999887 556777788888887775
No 123
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.30 E-value=2.4e-10 Score=102.38 Aligned_cols=139 Identities=16% Similarity=0.117 Sum_probs=115.3
Q ss_pred chhHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--------CHHHHHHHHHHHHh--c
Q 022205 61 PDVWTLYEQVSIAAMDCQC---LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--------LWAEAEKAYSSLLE--D 127 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~--~ 127 (301)
++.+..|.. |..++..++ ...|+.+|+++++.+|+++.++..++.++.... +...+.....+++. .
T Consensus 337 ~~Ay~~~lr-g~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQ-AHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 344444433 666665544 789999999999999999999998888776542 24456666666655 3
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
+|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 777888999999999999999999999999999999 5889999999999999999999999999999999875
No 124
>PRK15331 chaperone protein SicA; Provisional
Probab=99.28 E-value=9.1e-11 Score=86.94 Aligned_cols=103 Identities=9% Similarity=-0.126 Sum_probs=86.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
..++..+..+..|.-++..|++++|...|+-....+|.++..|..||.++...++|++|+..|..+..+++++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 44555667777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
|.|+..+|+ ...|+..|..++..
T Consensus 112 gqC~l~l~~---~~~A~~~f~~a~~~ 134 (165)
T PRK15331 112 GQCQLLMRK---AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHhC
Confidence 888888888 88888888888873
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=2e-11 Score=82.44 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205 145 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A 222 (301)
.|+++.|+.+++++++..|. +...++.+|.+++..|++++|+.++++ ...+|.++..++.+|.+++.+|+ +++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 45666666666666666663 344555566666666666666666666 55566666666666666666666 6666
Q ss_pred HHHHHHH
Q 022205 223 KKYYAST 229 (301)
Q Consensus 223 ~~~~~~a 229 (301)
+.+|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 6666553
No 126
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.28 E-value=1.2e-10 Score=89.98 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
++....+++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+.++++++...|.++..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34566689999999999999999999999999987764 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC----C-------cHHHHHHHHHHHhcccCC
Q 022205 205 AYADVLYTLGGV----D-------NILLAKKYYASTIDLTGG 235 (301)
Q Consensus 205 ~la~~~~~~~~~----~-------~~~~A~~~~~~al~~~p~ 235 (301)
.+|.++...|+. + .+++|..++++++.++|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 999999988861 1 146788888888888886
No 127
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=1.1e-08 Score=91.41 Aligned_cols=117 Identities=16% Similarity=0.023 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
+++.+++.|...|++++|+.+.+++|+..|..++.+...|.++-..|++.+|..+++.+-.+++.|-.+-...+..+.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 56788999999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred CCCCcHHHHHHHHHHHhccc--CCCch---h-Hhh--hHHHHHHHHHh
Q 022205 214 GGVDNILLAKKYYASTIDLT--GGKNT---K-ALF--GICLCSSAIAQ 253 (301)
Q Consensus 214 ~~~~~~~~A~~~~~~al~~~--p~~~~---~-~~~--~l~~~~~~l~~ 253 (301)
|+ .++|...+....+-+ |..+. . .|| ..|.++.+.|+
T Consensus 276 ~~---~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 276 GR---IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CC---HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99 999999988766554 22221 1 333 45566666665
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.26 E-value=2.2e-11 Score=82.28 Aligned_cols=81 Identities=28% Similarity=0.317 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205 111 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 188 (301)
+|+++.|+..+++++..+|. +...++.+|.+++..|++++|+.++++ ...+|.++...+.+|.+++.+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888888888888888875 455677788888888888888888888 777777777777888888888888888888
Q ss_pred HHHH
Q 022205 189 YEEL 192 (301)
Q Consensus 189 ~~~a 192 (301)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.26 E-value=1.5e-10 Score=107.85 Aligned_cols=134 Identities=15% Similarity=0.025 Sum_probs=122.0
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------ 166 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------ 166 (301)
..|.+..++..+...+...+++++|+..++.++..+|+...+++.+|.++...+++.++..+ .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34788999999999999999999999999999999999999999999999999888777665 5555555554
Q ss_pred -------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 167 -------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 167 -------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... + +++|+.++.+|+..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999 8 99999999999876
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.26 E-value=3e-11 Score=77.32 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++..+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 333344444444444444444444444444444444444444444444444444444433
No 131
>PRK15331 chaperone protein SicA; Provisional
Probab=99.23 E-value=2.4e-10 Score=84.73 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=64.3
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 175 (301)
+.....+..|.-+...|++++|...|+-+...+|.++..|..||.++..++++++|+..|..+..+++++|...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34445555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcccHHHHHHHHHHHHh
Q 022205 176 YVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~ 194 (301)
++..|+.+.|..+|+.++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6666666666666666665
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.23 E-value=7.6e-10 Score=90.58 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=63.5
Q ss_pred hhHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHH
Q 022205 99 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE 171 (301)
Q Consensus 99 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~ 171 (301)
...+..|..+ ...|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++..+|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444443 34566666666666666666665 3466666666666666666666666666666553 556666
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
+|.++...|++++|+.+|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666666666666666666666666666543
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=99.22 E-value=2e-09 Score=92.31 Aligned_cols=132 Identities=13% Similarity=-0.035 Sum_probs=119.2
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCC
Q 022205 101 GRLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 101 ~~~~a~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~ 165 (301)
.++.|.-....+ ....|+..|.+++ ..+|+...++..++.++... ....+|....+++++++|.|
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 367777776655 3467999999999 89999999999999998764 23457889999999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+ .++|....+++++++|.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999 99999999999999995
No 134
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.4e-10 Score=93.13 Aligned_cols=131 Identities=19% Similarity=0.139 Sum_probs=106.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
....|..+++.|+|..|...|++++..-. .+ ..++.+++.++.++++|.+|+..++++|+.+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 34668888999999999999998877322 11 2277888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhcccC
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL-LAKKYYASTIDLTG 234 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~-~A~~~~~~al~~~p 234 (301)
..+++..|.++...|+|+.|+..|++++++.|.|-.+...+..+..+... +. ...+.|.+.+...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999998888888877776665 44 44778888777654
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.21 E-value=5.7e-09 Score=85.45 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=94.3
Q ss_pred HHHHHHHHHHH-HhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHH
Q 022205 64 WTLYEQVSIAA-MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL---DPVLHK 136 (301)
Q Consensus 64 ~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 136 (301)
....+..|..+ +..|++++|+..|+..++.+|++ +.+++.+|.+++..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35566667765 66799999999999999999987 579999999999999999999999999988777 467999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (301)
.+|.++...|++++|+..|+++++.+|++..+-
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999987543
No 136
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=5.1e-08 Score=81.39 Aligned_cols=180 Identities=13% Similarity=0.049 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN----------------- 128 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------- 128 (301)
+....+...+..|+++.|..-+.++....|.++.+..+...+|...|++......+.+.-+..
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555555555555555555555555443210
Q ss_pred -------C------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 129 -------P------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 129 -------p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
+ .++.+...++.-+...|+.++|.+...++++..-+ +.....+ -...-++..
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~--~~l~~~d~~ 311 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLI--PRLRPGDPE 311 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHH--hhcCCCCch
Confidence 0 11223333444444455555555555555544322 2211111 112334455
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.=++..++.++..|++|..+..+|..+++.+. |.+|..+|+.+++..| ....+..++.++..+|+
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~--s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRP--SASDYAELADALDQLGE 376 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHcCC
Confidence 55555556666678889999999999999999 9999999999999988 45566677777777776
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.21 E-value=1e-10 Score=74.88 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (301)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (301)
.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567777777777777777777777777777777777777777777777777777777777664
No 138
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.20 E-value=2.2e-09 Score=101.03 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVA 140 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 140 (301)
+...|..+...+...|++++|+.+|+.+.... ..+...+..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 34455566666666777777777776665532 1233345555555555666666666665555543 334445555556
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCCCc
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAYADVLYTLGGVDN 218 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~ 218 (301)
.|.+.|++++|..+|++..+ | +..+|..+...|.+.|+.++|+..|++..... |+ ...+..+..++...|.
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~--- 441 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGL--- 441 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCc---
Confidence 66666666666666655432 2 34455566666666666666666666554422 22 2333344444444444
Q ss_pred HHHHHHHHHHHh
Q 022205 219 ILLAKKYYASTI 230 (301)
Q Consensus 219 ~~~A~~~~~~al 230 (301)
.++|..+|....
T Consensus 442 ~~~a~~~f~~m~ 453 (697)
T PLN03081 442 SEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHHHH
Confidence 455554444443
No 139
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.20 E-value=3.3e-09 Score=99.91 Aligned_cols=248 Identities=11% Similarity=0.024 Sum_probs=171.6
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~ 115 (301)
++.++++.+....... .+.|+ ...|..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|+++
T Consensus 304 g~~~eA~~lf~~M~~~-----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 304 GYSEEALCLYYEMRDS-----GVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred CCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 4455555555554432 22333 3467778888999999999999999998876 567778888899999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
+|...|++... | +...|..+...|...|+.++|+.+|++..+. .| +..++..+..++...|..++|..+|+...
T Consensus 378 ~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999998754 2 5668899999999999999999999998764 34 46678888888999999999999999887
Q ss_pred hhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc--chHHH
Q 022205 194 LSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE--SPELQ 269 (301)
Q Consensus 194 ~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~ 269 (301)
+..+- +...|..+..++.+.|+ +++|.+.+++. ...| +...|..+..++...++...+.....+- .....
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~---~~eA~~~~~~~-~~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGL---LDEAYAMIRRA-PFKP--TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCC---HHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 64322 33467778888999999 99999988764 2344 4556666666665555433221110000 00000
Q ss_pred HHHHHHHHHHHHhhCC-hhhhHHHHHHhhccC
Q 022205 270 SLAAAALEKDYKQRAP-AKLLLLTSALKSLKT 300 (301)
Q Consensus 270 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 300 (301)
...-..+..+|.+.+. +...++...|+.-++
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 0122346667777766 556666666665543
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=2.2e-10 Score=95.38 Aligned_cols=177 Identities=16% Similarity=0.061 Sum_probs=136.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhC-C-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQF-P-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
..++..+...++-+.++..++..+... + .++.+....|.++...|++++|+..+.+. .+.+.......++..+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~ 144 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKM 144 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHc
Confidence 344444433345556666555544332 2 34556677788888899999999887754 6778888889999999
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
++++.|.+.++...+.+.++.-+....+.+.+..| .+.+|..+|+......|.++..+..+|.++..+|+ +++|.
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eAe 221 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEAE 221 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHHH
Confidence 99999999999999888776666666666666655 58999999999888888899999999999999999 99999
Q ss_pred HHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 224 KYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
..+.+++..+|+ +...+.+++.|...+|+
T Consensus 222 ~~L~~al~~~~~-~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 222 ELLEEALEKDPN-DPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHCCC-CC-HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccC-CHHHHHHHHHHHHHhCC
Confidence 999999999996 99999999999999886
No 141
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.18 E-value=3.6e-11 Score=100.29 Aligned_cols=185 Identities=16% Similarity=0.059 Sum_probs=123.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYS 122 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~ 122 (301)
++|..+-..|.|++|+.++.+-+.... ...++++.+|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 344555555666666666555444221 234566667777666542 233444444
Q ss_pred HHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHH
Q 022205 123 SLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYE 190 (301)
Q Consensus 123 ~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~ 190 (301)
.-++.... ...++.++|..|+..|+|+.|+..-+.-+.+.... -.++.++|.++.-.|+++.|+++|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 44332211 12356677777778888888888877666554322 3477899999999999999999999
Q ss_pred HHHhh----CCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC----C-CchhHhhhHHHHHHHHHhhhc
Q 022205 191 ELILS----QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG----G-KNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 191 ~al~~----~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~~~l~~~~~~l~~~~~ 256 (301)
..+.+ .... ....+.+|..|....+ ++.|+.|+++-+.+.. . ...|+.|.|+.++..++...+
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 87744 2222 3467889999999999 9999999998776532 1 688999999999999987443
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6.7e-10 Score=92.99 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.....|..+++.|+|..|...|++++..-+.+ ..++.+++.|+.+++.|..|+..+.++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 34567899999999999999999988764322 346889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|..++++.|.++..+|+ ++.|+..|++++++.|+ |..+...|..|..++..
T Consensus 290 N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGE---YDLARDDFQKALKLEPS-NKAARAELIKLKQKIRE 340 (397)
T ss_pred chhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999996 88888888888887765
No 143
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.14 E-value=3.5e-11 Score=100.34 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------C
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP------L 130 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~ 130 (301)
...+|.++|.+|+..++|.+|+++-..-+.. .-..+...-.+|.++-..|.|++|+.++.+-+.... .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 5668999999999999999999875432221 124456667889999999999999999998876432 2
Q ss_pred CHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHH
Q 022205 131 DPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQ 184 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~ 184 (301)
...+++++|.+|...|+ ++.|.++|..-+++.... ..++-+||..|+-.|+|++
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 35689999999998775 233445555444443222 3467789999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC----C-CchhHhhhHHHHHHHHHh
Q 022205 185 AAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG----G-KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 185 A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p----~-~~~~~~~~l~~~~~~l~~ 253 (301)
|+..-+.=+.+.... -.++.++|.++.-+|+ ++.|.++|.+.+.+.- . ......|.|+-.|.-+.+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e 290 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKE 290 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHH
Confidence 999988777665333 3478999999999999 9999999999776532 1 456667888888888877
Q ss_pred hhccCCccccc
Q 022205 254 LTKGRNKEDKE 264 (301)
Q Consensus 254 ~~~~~~~~~~~ 264 (301)
..++..-+.+.
T Consensus 291 ~~kAI~Yh~rH 301 (639)
T KOG1130|consen 291 VQKAITYHQRH 301 (639)
T ss_pred HHHHHHHHHHH
Confidence 77766655544
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.14 E-value=3.3e-09 Score=75.79 Aligned_cols=96 Identities=19% Similarity=0.059 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---CHHHHHHH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWREL 172 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 172 (301)
.+++.+|.++-..|+.++|+..|++++...++. ..++..+|..+...|++++|+..+++.+..+|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 466778888888888888888888888865544 347778888888888888888888888888787 66777778
Q ss_pred HHHHHHcccHHHHHHHHHHHHh
Q 022205 173 AEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~ 194 (301)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877664
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.13 E-value=1.4e-08 Score=84.93 Aligned_cols=169 Identities=19% Similarity=0.177 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC---
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD--- 131 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~--- 131 (301)
....|...|..+-..|++++|..+|.++....- .....+...+.++.. .++++|+.+|++++... ..+
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456788889999999999999999999877542 223445556666655 49999999999999842 222
Q ss_pred -HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC----
Q 022205 132 -PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---- 199 (301)
Q Consensus 132 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---- 199 (301)
..++..+|.+|... |++++|+.+|+++++..... ...+..+|.++...|+|++|+..|+++....-++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 34788999999999 99999999999999875432 3467789999999999999999999998653221
Q ss_pred H---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 200 P---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 200 ~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
. ..+...+.|+...|+ +..|...+++....+|.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTT
T ss_pred hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 1 345677889999999 99999999999999986
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.13 E-value=4.2e-09 Score=90.63 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
.++++.|+.+++++...+|+ +...++.++...++-.+|+..+.+++..+|.+...+...+..+...++++.|+.+.+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444455555444444432 333344444444444445555555554444444444444444444455555555555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 189 (301)
+++...|++...|+.|+.+|...|+++.|+..+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555544445555555555555555444433
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.12 E-value=5e-09 Score=90.16 Aligned_cols=120 Identities=19% Similarity=0.073 Sum_probs=110.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+++++..+|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 345566679999999999999998876 55668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
.|+.+.++++...|++...|..|+.+|..+|+ ++.|+..+..+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999877643
No 148
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.12 E-value=4.8e-08 Score=77.60 Aligned_cols=169 Identities=14% Similarity=0.065 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK 136 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 136 (301)
....+++-|...++.|++++|.+.|+.+...+|.. ..+...++..+...+++++|+...++.+...|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 45677888999999999999999999999999844 567888999999999999999999999999988765 677
Q ss_pred HHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHHcccHHHHHHHHHH
Q 022205 137 RRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 137 ~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
..|.+++.. .....|+..|+..+...|++.- --..+|..|.+.|.+..|+.-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 777776653 2245788899999999999821 113578999999999999999999
Q ss_pred HHhhCCCC---HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 192 LILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 192 al~~~p~~---~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+++..|+. .+++..+..+|+.+|- .++|.+. .++|..++.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl---~~~a~~~-~~vl~~N~p 235 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGL---TDEAKKT-AKVLGANYP 235 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCC---hHHHHHH-HHHHHhcCC
Confidence 99887765 4678889999999998 7777665 456766654
No 149
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=4.1e-09 Score=84.76 Aligned_cols=155 Identities=15% Similarity=0.045 Sum_probs=117.9
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (301)
+...+|..|+.++..-....|.+...+..+|.||....+|..|-.+|++.-...|.........++.+...+.+..|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55566777777777777777766667777777777777777777777777777776666666666666666666666554
Q ss_pred HHHH------------------------------HHhcC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 155 LNKY------------------------------LETFM--ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 155 ~~~~------------------------------l~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.... ++.-| +++....+.|-+.++.|+++.|++-|+.+++...-++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll 180 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL 180 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence 4432 11223 456778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
-++++-+++..|+ +..|+++..+.++.
T Consensus 181 AYniALaHy~~~q---yasALk~iSEIieR 207 (459)
T KOG4340|consen 181 AYNLALAHYSSRQ---YASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence 9999999999999 99999998887765
No 150
>PLN03077 Protein ECB2; Provisional
Probab=99.10 E-value=9.2e-08 Score=92.33 Aligned_cols=220 Identities=12% Similarity=-0.005 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhh----------------------------------HHHHHHHHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRV----------------------------------GRLEGILLEA 110 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~----------------------------------~~~~a~~~~~ 110 (301)
.|..+...+...|+.++|+.+|+++.... |+.... ...+-..|.+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 44555566677777777777777776432 322211 2223366777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFC 188 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~ 188 (301)
.|++++|...|+.. +.+...|..+...|...|+.++|+.+|++..+. .|+ ..++..+-..+...|.+++|..+
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHH
Confidence 88888888888775 456778889999999999999999999988764 454 44566666778888999999999
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccch
Q 022205 189 YEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP 266 (301)
Q Consensus 189 ~~~al~~~p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 266 (301)
|+......+ .+...+..+..++.+.|+ +++|.+.+++. ...| +...|-.|..++..-++...+. ....
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~---~~eA~~~~~~m-~~~p--d~~~~~aLl~ac~~~~~~e~~e----~~a~ 681 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGK---LTEAYNFINKM-PITP--DPAVWGALLNACRIHRHVELGE----LAAQ 681 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHC-CCCC--CHHHHHHHHHHHHHcCChHHHH----HHHH
Confidence 998874432 234677888889999999 99999988874 3455 4555555444443222111000 0000
Q ss_pred HHH------HHHHHHHHHHHHhhCC-hhhhHHHHHHhhccC
Q 022205 267 ELQ------SLAAAALEKDYKQRAP-AKLLLLTSALKSLKT 300 (301)
Q Consensus 267 ~~~------~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 300 (301)
++. ...-..+..+|...+. +....+...|++-++
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 110 0112234567777776 677778888877654
No 151
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=2.6e-07 Score=78.94 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=158.4
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHH----H-HHHHhCCChHHHHHHHHHHHHhCC----CchhhHHHHHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV----S-IAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGIL 107 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----a-~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~ 107 (301)
++.+.+.+.....+.. .++......|.-|..+ + ..-+...+.+.+.++++.++++-| ..+.+|.+.|..
T Consensus 336 g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 5666666665555544 2222222345433322 2 233457899999999999999988 457889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
..++.+...|...+-.++...|.+. .+.....+..+.++++.+..+|++.++..|.+..+|...|.+-..+|+++.|..
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999865 455667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC-HH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 188 CYEELILSQPTV-PL-YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 188 ~~~~al~~~p~~-~~-~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
+|+-|+....-+ |. .|..+-..-...|. ++.|...|++.++..+ +...|..++.
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerlL~rt~--h~kvWisFA~ 548 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERLLDRTQ--HVKVWISFAK 548 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHHHHhcc--cchHHHhHHH
Confidence 999999765433 32 45555566667788 9999999999999987 5667766664
No 152
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=3.9e-08 Score=81.06 Aligned_cols=158 Identities=13% Similarity=0.039 Sum_probs=98.7
Q ss_pred HhCCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
+...+|..|+.+++-....+.+. .....-+|.|+++.|+|++|...|..+...+.-+...+.+++.+++..|.|.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 33455555555555444333211 12333345555555555555555555555444444455555555555555555544
Q ss_pred HHHHHH--------------Hhc------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 154 WLNKYL--------------ETF------------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 154 ~~~~~l--------------~~~------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
...++- +++ .+..+-...|+.+.+..-.|++|+.+|.+++.-+|.....-..+|
T Consensus 113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A 192 (557)
T KOG3785|consen 113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA 192 (557)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence 433320 000 112344556788888888899999999999998888888888899
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
-||+++.- ++.+.+.+.--++..|+
T Consensus 193 LCyyKlDY---ydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 193 LCYYKLDY---YDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHhcch---hhhHHHHHHHHHHhCCC
Confidence 99999999 99998888888888886
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.07 E-value=6.4e-10 Score=71.79 Aligned_cols=64 Identities=31% Similarity=0.411 Sum_probs=31.8
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555555555555555555555555555555555555555555555444444433
No 154
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-07 Score=82.85 Aligned_cols=187 Identities=17% Similarity=0.038 Sum_probs=126.8
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (301)
.....++++..+-.++.. .|+..+++.....+.++.+.|++|+.+.+.-......+ ...+..+.|.++.++.
T Consensus 24 ~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccH
Confidence 344455666666666655 56666666666667777777777775544333211111 1115667777777777
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------------------------------CC
Q 022205 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------------------------------MA 164 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------------------p~ 164 (301)
++|+..++ ..++.+..+....+++++++|+|++|..+|+..++.+ |.
T Consensus 96 Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 96 DEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred HHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 77777776 3444445555666777777777777777777654332 22
Q ss_pred -CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 165 -DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 165 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
+.+.+++.+-++...|+|.+|++.+++++.+. ..+ ..+...++.++..+|+ .++|...|..
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~~ 249 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYVD 249 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHHH
Confidence 34567899999999999999999999995331 111 2367889999999999 9999999999
Q ss_pred HhcccCC
Q 022205 229 TIDLTGG 235 (301)
Q Consensus 229 al~~~p~ 235 (301)
.++.+|.
T Consensus 250 ~i~~~~~ 256 (652)
T KOG2376|consen 250 IIKRNPA 256 (652)
T ss_pred HHHhcCC
Confidence 9999885
No 155
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.07 E-value=1.2e-07 Score=79.27 Aligned_cols=167 Identities=16% Similarity=0.056 Sum_probs=136.4
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------------------------------------------C
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------------------------------------------E 96 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------------------------------------~ 96 (301)
+.|.+..+..-...+|+..|++.+...++.++.+..- .
T Consensus 182 ~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 182 MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 3667777777778899999999999999999887221 1
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
++.+....+.-+...|+.++|.+....+++..-+.. ....++ ...-++...-++..++.++..|++|..+..||..+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 233334455667788999999999999999775543 222122 23568889999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
++.+.|.+|..+|+.+++..|+ ...+..+|.++..+|+ ...|...++.++.+
T Consensus 339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~ 390 (400)
T COG3071 339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE---PEEAEQVRREALLL 390 (400)
T ss_pred HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 9999999999999999998875 5557889999999999 99999999999854
No 156
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.4e-08 Score=87.13 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=137.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 151 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 151 (301)
..+...|+|++|.+...+++...|++..+.+..-.++.+.++|++|+...+.-......+ ...+..+.|+++.+..++|
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHH
Confidence 345678999999999999999999999999999999999999999995555433222222 2236889999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-------------------------------CH
Q 022205 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------------------------------VP 200 (301)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------------------~~ 200 (301)
+..++ ..++.+.......|.+++++|+|++|+.+|+..++.+.+ +.
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 99999 566777778888999999999999999999998543221 34
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc------CCCc---h-----hHhhhHHHHHHHHHhhhc
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GGKN---T-----KALFGICLCSSAIAQLTK 256 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~---~-----~~~~~l~~~~~~l~~~~~ 256 (301)
..+++.|.++...|+ |.+|++.+++++++. .+.+ + -....++.++..+|+..+
T Consensus 176 el~yN~Ac~~i~~gk---y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 176 ELLYNTACILIENGK---YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 578899999999999 999999999994431 1111 1 123456667777776444
No 157
>PLN03077 Protein ECB2; Provisional
Probab=99.03 E-value=2.3e-08 Score=96.39 Aligned_cols=173 Identities=11% Similarity=0.084 Sum_probs=130.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAKAQGN 147 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 147 (301)
+...|.+.|++++|...|+.. +.+...|..+...|...|+.++|+..|++.... .|+ ...+..+...+.+.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcCh
Confidence 345677788888888888775 456677888888888899999999999988774 354 3445666677888899
Q ss_pred hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205 148 FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY 225 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~ 225 (301)
+++|..+|+...+..+- +...|..+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+ .+.+...
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~---~e~~e~~ 679 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH---VELGELA 679 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHH
Confidence 99999999988754332 3567888889999999999999888875 34454 5667677667777788 8888888
Q ss_pred HHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 226 YASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 226 ~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.++.++++|+ +...+.-++-.|...|+
T Consensus 680 a~~l~~l~p~-~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 680 AQHIFELDPN-SVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHhhCCC-CcchHHHHHHHHHHCCC
Confidence 8888899885 77777777666665554
No 158
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.03 E-value=2.3e-09 Score=70.19 Aligned_cols=67 Identities=24% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA 205 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 205 (301)
..+|...+++++|+.++++++..+|+++..|..+|.++...|++++|+..|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3455566666666666666666666666666666666666666666666666666666665554433
No 159
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.01 E-value=7.1e-10 Score=90.68 Aligned_cols=180 Identities=9% Similarity=-0.027 Sum_probs=134.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 147 (301)
-..|..|+.+|.|++|++||.+.+..+|.++..+.++|..|++..+|..|...+..++.++.....+|.+.|..-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHH-----------------------------------HHHHHHcccHHHHHHHHHHH
Q 022205 148 FPTAIEWLNKYLETFMADHDAWREL-----------------------------------AEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~l-----------------------------------g~~~~~~~~~~~A~~~~~~a 192 (301)
..+|.+.++.++++.|++.+..-.+ |..+...|.++.++.++-..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~ 260 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP 260 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence 9999999999999999875543322 22333334444444444433
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+....++...-.+ +..+.+..+ ++.++....+++..+|. ...+..+-+-+...++
T Consensus 261 ~A~~~~~~~L~~~-~~~~~KI~~---~~~~~~~~~~~~~~~~s-~~~~~s~~~~A~T~~~ 315 (536)
T KOG4648|consen 261 RATIDDSNQLRIS-DEDIDKIFN---SNCGIIEEVKKTNPKPT-PMPDTSGPPKAETIAK 315 (536)
T ss_pred ccccCccccCccc-HHHHHHHhh---cchhHHHHHHhcCCCCC-cCcccCCCchhHHHHh
Confidence 3333222222222 555566666 77888888888777774 5555544444444433
No 160
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=1.5e-08 Score=76.98 Aligned_cols=98 Identities=14% Similarity=0.064 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
+..-|.-++..|+|.+|..-|..++...|..+ -.+.+.|.++.+++.++.|+..+.++++++|.+..++.+.|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557778888889999999999998888764 3577889999999999999999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 210 LYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|.++.. +++|+..|.+.++.+|.
T Consensus 178 yek~ek---~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcc
Confidence 999988 99999999999999996
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.01 E-value=1.6e-09 Score=69.91 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=40.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (301)
Q Consensus 109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 173 (301)
+..|++++|+..|++++..+|++..++..++.++...|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34566666666666666666666666666666666666666666666666666666555555444
No 162
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=2.3e-08 Score=80.14 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE 174 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~ 174 (301)
.+..|.-+...|+|..|...|...++..|++ +.++++||.+++.+|+++.|...|..+++..|.+ |++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4666677777788888888888888777765 4477888888888888888888888888877665 677888888
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
+...+|+.++|..+|+++++..|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888888888888776654
No 163
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3.2e-08 Score=79.74 Aligned_cols=182 Identities=17% Similarity=0.107 Sum_probs=142.8
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
..+...+++........ +|.....+..+|.||+...+|..|-.+++++-..+|......+..+..+...+.+.
T Consensus 23 d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 23 DARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 34445566655555544 66667778889999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHHh------------------------------cCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205 116 EAEKAYSSLLE------------------------------DNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (301)
Q Consensus 116 ~A~~~~~~al~------------------------------~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (301)
.|+........ .-| ++.....+.|.+.++.|+++.|++-|+.+++...
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 87776543321 223 4566788899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----CCCC----------------H---------HHHHHHHHHHHHcC
Q 022205 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILS----QPTV----------------P---------LYHLAYADVLYTLG 214 (301)
Q Consensus 164 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~----------------~---------~~~~~la~~~~~~~ 214 (301)
-+|..-++++.++++.|++..|+++....+.. .|.. + .+....+.++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 99999999999999999999999988887754 2321 1 14455677888888
Q ss_pred CCCcHHHHHHHHH
Q 022205 215 GVDNILLAKKYYA 227 (301)
Q Consensus 215 ~~~~~~~A~~~~~ 227 (301)
+ ++.|.+.+.
T Consensus 256 n---~eAA~eaLt 265 (459)
T KOG4340|consen 256 N---YEAAQEALT 265 (459)
T ss_pred c---HHHHHHHhh
Confidence 8 877776654
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=2.6e-07 Score=73.94 Aligned_cols=169 Identities=21% Similarity=0.179 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-LLEAKGLWAEAEKAYSSLLEDNP---LDPVLHKRR 138 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l 138 (301)
....+...+......+++..++..+..+....+.........+. ++...|+++.|...+.+++..+| .........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 173 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLAL 173 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHh
Confidence 33344444444444444555555555555444433333333333 44445555555555555544333 223333333
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCC
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 217 (301)
+..+...++++.++..+.+++...+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 251 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR-- 251 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC--
Confidence 34444445555555555555555544 344455555555555555555555555555544444444444444444444
Q ss_pred cHHHHHHHHHHHhcccC
Q 022205 218 NILLAKKYYASTIDLTG 234 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p 234 (301)
++.+...+.+++...|
T Consensus 252 -~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 252 -YEEALEALEKALELDP 267 (291)
T ss_pred -HHHHHHHHHHHHHhCc
Confidence 5555555555555444
No 165
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.99 E-value=2.7e-08 Score=72.27 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHK 136 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 136 (301)
....++.-|...++.|+|.+|++.|+.+...+|. ...+.+.++.+++..+++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3445666788888888888888888888888873 4567778888888888888888888888888887754 677
Q ss_pred HHHHHHHHcCC
Q 022205 137 RRVAIAKAQGN 147 (301)
Q Consensus 137 ~l~~~~~~~g~ 147 (301)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=8.7e-08 Score=73.81 Aligned_cols=169 Identities=17% Similarity=0.094 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
+....++..|..|-..|-+.-|..-|.+++.+.|+-+.+...+|..+...|+|+.|.+.|...++.||.+-.+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 46677778888888889899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHH--HHHHH--------------HHHH--------------HHcccHHHHHHHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHD--AWREL--------------AEIY--------------VSLQMYKQAAFCYEE 191 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--------------g~~~--------------~~~~~~~~A~~~~~~ 191 (301)
+..-|++.-|...+.+.-..+|++|- .|..+ ..-+ +..|+..+ ...+++
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~-e~l~~~ 221 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE-ETLMER 221 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH-HHHHHH
Confidence 99999999999999888888888863 33322 1111 11122111 112333
Q ss_pred HHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 192 LILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 192 al~~~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
+..-..++ .+.++.+|.-+...|+ .++|...|.-++.-+-
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~---~~~A~~LfKLaiannV 268 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGD---LDEATALFKLAVANNV 268 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhH
Confidence 33322233 3467888888899999 9999999988887543
No 167
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=5.8e-07 Score=85.60 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=156.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
.|.+|.++-..| |.-+...+.|+++.+.. +...++..+..+|...+.+++|.++++..++...+...+|..++..+
T Consensus 1499 iWiA~lNlEn~y---G~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1499 IWIAYLNLENAY---GTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHhHHHhh---CcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 555555554443 77788888999988753 34557778889999999999999999999998888899999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
+.+++-+.|..++.+++..-|. +.......|.+.++.|+.+.+...|+..+.-.|.-...|..+...-.+.|+ .+
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~ 1651 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IK 1651 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HH
Confidence 9999999999999999999998 778888999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHhcccCC-CchhHhhhHHHHHHHH
Q 022205 221 LAKKYYASTIDLTGG-KNTKALFGICLCSSAI 251 (301)
Q Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l 251 (301)
.++..|++++.+.=. ...+.+|..-+.|.+-
T Consensus 1652 ~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 999999999876422 4777777766666553
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.96 E-value=3.3e-08 Score=70.66 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY 206 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 206 (301)
.+++.++.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467899999999999999999999999976554 568899999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
+.++...|+ .++|+..+-.++.
T Consensus 82 Al~L~~~gr---~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGR---PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHH
Confidence 999999999 9999999988775
No 169
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.93 E-value=9.1e-07 Score=70.72 Aligned_cols=182 Identities=21% Similarity=0.210 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHH--hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA- 140 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~- 140 (301)
.......+..+...+++..+...+..... ..+.....+...+......+++..++..+..++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 55667778888999999999999999987 678888899999999999999999999999999988887666666666
Q ss_pred HHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCC
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 216 (301)
++...|+++.|...+.+++..+| .........+..+...++++.|+..+.+++...|. ....+..++..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK- 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc-
Confidence 89999999999999999988777 34666777777788899999999999999999999 69999999999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 217 DNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
+..|...+..++...|. ....+..++..+.
T Consensus 218 --~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 247 (291)
T COG0457 218 --YEEALEYYEKALELDPD-NAEALYNLALLLL 247 (291)
T ss_pred --HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHH
Confidence 99999999999999985 4455555554444
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.92 E-value=1e-08 Score=67.15 Aligned_cols=65 Identities=28% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 170 (301)
.++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666555443
No 171
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.92 E-value=8.1e-08 Score=69.83 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=68.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR 170 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~ 170 (301)
.+..++..|.-.+..|+|.+|++.|+.+....|.. ..+...++.+|+..|++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34556666777777777777777777777766654 33666777777777777777777777777777663 4566
Q ss_pred HHHHHHHHccc---------------HHHHHHHHHHHHhhCCCCH
Q 022205 171 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 171 ~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~ 200 (301)
..|.+++.+.. ...|...|++.+...|++.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 66666666544 4555555555555555543
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.6e-07 Score=72.33 Aligned_cols=149 Identities=19% Similarity=0.083 Sum_probs=118.7
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
.+..++.+|.+|-..|-+.-|.-.|.+++...|+.+.+++.+|..+...|+++.|...|...++++|..--+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+--|+++-|..-+.+-.+.+|++|.--..+-..- ..-+ ..+|...+.+-.+... +.+||..++..-+|+
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~d---P~~A~tnL~qR~~~~d----~e~WG~~iV~~yLgk 212 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLD---PKQAKTNLKQRAEKSD----KEQWGWNIVEFYLGK 212 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCC---HHHHHHHHHHHHHhcc----HhhhhHHHHHHHHhh
Confidence 9999999999999999999999985322221111 2223 7777776654433322 234555555555544
No 173
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.4e-06 Score=74.58 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
...|...|+--..++++..|..++++++..+..+...|...+.+-+.......|...+.+++..-|.--..|+....+.-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34455566667778999999999999999998899999999999999999999999999999999999899999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
.+|+..-|.++|++.++..|+ ..+|......-.+-+.++.|..+|++-+-..|+ ...|...+..-.+.|+ ..-|.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHHH
Confidence 999999999999999999995 788888888888889999999999999988875 6678889999999999 99999
Q ss_pred HHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 224 KYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
..|.+|++.-.+.......-.+.+....
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999875542333333334333333
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.87 E-value=1.2e-08 Score=83.53 Aligned_cols=109 Identities=20% Similarity=0.132 Sum_probs=100.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
.-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++...|..|...++.++.++.....+|...|.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
+..+|.+.++.+|.+.|.+.+....++.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999999999987766555544
No 175
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=5.9e-08 Score=73.76 Aligned_cols=105 Identities=28% Similarity=0.272 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
.-|.-++..|+|.+|..-|..++...|..+. .|.+.|.+..+++.++.|+..+.++++++|....++...+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3466777778888888888888887776543 56677778888888888888888888888888888888888888
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
+...|++|+..|.++++.+|....+....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 888888888888888888887665544443
No 176
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.9e-06 Score=68.54 Aligned_cols=160 Identities=13% Similarity=-0.024 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA- 144 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 144 (301)
....-|..++..|++++|++.... ..+..+..+-..++.++.+++-|...+++....+.+ ..+..|+..+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence 333447788888999999888765 334556667778888889999999988888776643 344556665554
Q ss_pred ---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 145 ---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 145 ---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
.+.+.+|.-+|++.-+..|..+......+.|+..+|+|++|...++.++..++++|..+.++-.+-...|. ..+
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~~ 259 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DAE 259 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---ChH
Confidence 35578888899998887888888899999999999999999999999999999999999999888888887 555
Q ss_pred HHHHH-HHHhcccCC
Q 022205 222 AKKYY-ASTIDLTGG 235 (301)
Q Consensus 222 A~~~~-~~al~~~p~ 235 (301)
+..-+ .+.....|.
T Consensus 260 ~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 260 VTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHhcCCc
Confidence 54444 444444554
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.86 E-value=5.5e-08 Score=72.99 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc--
Q 022205 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-- 181 (301)
Q Consensus 114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-- 181 (301)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+...++..+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666666666666655554422 3456666666677777777777777777665532
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 182 ---------YKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 182 ---------~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
|++|..+|++|...+|++..+...|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56667777777777777665544443
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=1.6e-08 Score=86.71 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=64.8
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
.+|+++.+++++|.+|...|++++|+..|+++++++|+++.+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999854 9999999999999999999999999973
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.85 E-value=7.2e-08 Score=77.33 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYAD 208 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~ 208 (301)
.+..+.-+...|+|..|...|...++..|++ +.+++-||.+++.+|++++|...|..+.+-.|++ |++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6888889999999999999999999999987 6789999999999999999999999999988766 688999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 209 VLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 209 ~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+...+|+ .++|...|+++++.-|+
T Consensus 224 ~~~~l~~---~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGN---TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcC---HHHHHHHHHHHHHHCCC
Confidence 9999999 99999999999999997
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.83 E-value=1.4e-06 Score=65.72 Aligned_cols=149 Identities=19% Similarity=0.110 Sum_probs=114.6
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEWL 155 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (301)
.=|.+....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. ....++..+..+++..+..+++..|...+
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 69 KLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred hcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555555555555533 3456778888899999999999998887 55677888888999999999999999999
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 156 NKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 156 ~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
++..+.+|. +|+....+|.++...|.+.+|...|+.++...|+ +.+...++..+..+|+ ..+|..-|....
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v~ 220 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAVV 220 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHHH
Confidence 999988874 4777888899999999999999999999988875 5666778888888887 666665555443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.82 E-value=1.6e-07 Score=78.43 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC--CC-
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LD- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~- 131 (301)
.....|...+.++.+. ++++|+.++++++..+- .-...+..+|.+|... |++++|++.|++++.... +.
T Consensus 73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 3455666666665554 99999999999998652 2245678899999998 999999999999998432 12
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-
Q 022205 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP- 200 (301)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~- 200 (301)
..++..+|.++...|+|++|+..|++.....-++ ...++..+.|++..|++..|...+++....+|...
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2377889999999999999999999998754221 23566788899999999999999999999988552
Q ss_pred --H--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 201 --L--YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 201 --~--~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
+ ....+-. .+..|+.+.+..|+..|...-+++|
T Consensus 232 s~E~~~~~~l~~-A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 232 SREYKFLEDLLE-AYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp SHHHHHHHHHHH-HHHTT-CCCHHHHCHHHTTSS---H
T ss_pred cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHcccCccHH
Confidence 2 2333323 3466777779999999998888877
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.81 E-value=3.2e-08 Score=84.97 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=66.1
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (301)
.+|+++..++.+|..+...|+|++|+..|++++..+|++..+ |+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999999854 9999999999999999999999999973
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=1.2e-06 Score=69.76 Aligned_cols=155 Identities=16% Similarity=0.190 Sum_probs=127.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AW 169 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~ 169 (301)
..+..++..|...+..|++++|+..|+.+...+|..+. +...++.++.+.+++++|+...++.+.++|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 34567888899999999999999999999998887654 8889999999999999999999999999998854 56
Q ss_pred HHHHHHHHHc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHcCCCCcHHHHHH
Q 022205 170 RELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKK 224 (301)
Q Consensus 170 ~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~~~~A~~ 224 (301)
+..|.+++.. .-...|+..|+..+...|+... --...|..|.+.|. +..|+.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~n 188 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAIN 188 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHH
Confidence 7777777654 2356889999999999998742 12346788999999 999999
Q ss_pred HHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205 225 YYASTIDLTGG--KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 225 ~~~~al~~~p~--~~~~~~~~l~~~~~~l~~ 253 (301)
.++.+++.-|+ ....++..+..++..+|-
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 99999998776 345666777777777775
No 184
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=6.5e-08 Score=72.59 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc----------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 022205 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ----------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG-- 215 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-- 215 (301)
|+.|.+.++.....+|.+++.+++.|.++..+. .+++|+.-|+.++.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578889999999999999999999999988763 35788999999999999999999999999988764
Q ss_pred --C----CcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 216 --V----DNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 216 --~----~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
. +.|++|..+|++|...+|+ +.-..-.|-+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~-ne~Y~ksLe~ 122 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN-NELYRKSLEM 122 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 1 3489999999999999996 5444334433
No 185
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=5.9e-06 Score=73.34 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------- 130 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------- 130 (301)
.-..|..+|..|-..|+.+.|..+|+++.+.. + +-..+|...|..-.+..+++.|+.+.+++...-..
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 45677788999999999999999999999864 3 33678889999999999999999999998762211
Q ss_pred ----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CC
Q 022205 131 ----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT 198 (301)
Q Consensus 131 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~ 198 (301)
+..+|..++...-..|-++....+|++.+++.--.|....+.|..+.....+++|.+.|++.+.+. |.
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 234788888888899999999999999999999999999999999999999999999999999875 44
Q ss_pred CHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205 199 VPLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (301)
Q Consensus 199 ~~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (301)
-..+|..+-.-+.. .|. -..+.|...|++|++..|..+.+..|
T Consensus 546 v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~Cpp~~aKtiy 589 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDGCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566554333322 221 12999999999999999974555544
No 186
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.1e-07 Score=73.46 Aligned_cols=150 Identities=13% Similarity=0.003 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------------cC---
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--------------DN--- 128 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~--- 128 (301)
.-.-+|.+++..|+|++|+..+.-+...+.-+...+..+|.+++..|.|.+|.....++-+ .+
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 3444788999999999999999999987767778899999999999999999887766522 01
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 129 ---------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 129 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
.+..+-...++.++...-.|.+|+.+|.+++..+|+-.....+++.||++..-++-+.+.+.-.+...|+.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 01122344566677777789999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 022205 200 PLYHLAYADVLYTLGG 215 (301)
Q Consensus 200 ~~~~~~la~~~~~~~~ 215 (301)
+.+....+..++++=+
T Consensus 219 tiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9998888888877644
No 187
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.7e-06 Score=66.87 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c--CCCHHHHHHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----F--MADHDAWREL 172 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~l 172 (301)
+.+.+..++...|.|.-.+..+.++++.+ |.++.....+|.+.++.|+.+.|..+|+++-+. + .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44455555555566666666666666555 444555555666666666666665555532221 1 1223344455
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+.+|.-.+++..|...|.+++..+|.++.+-.+.|-|...+|+ ...|++..+.++...|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence 5555556666666666666666666666666666666666666 66666666666666665
No 188
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.71 E-value=3.1e-08 Score=65.72 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQ---P-T---VPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p-~---~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
.++.++|.+|...|++++|+.+|++++.+. + + ...++.++|.++...|+ +++|+.+|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Confidence 344444444444444444444444444321 1 1 12234445555555555 5555555555444
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.71 E-value=3.4e-06 Score=63.68 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=116.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcccHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
+....+.=+.+....-..+.+...|.... .+.+|......|++.+|...|++++. .+-+++..+..++.+.+..+++.
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 34444445666666666666777776544 67899999999999999999999886 56788999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205 184 QAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC 247 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~ 247 (301)
.|...+++..+.+|.. |..+..+|..+...|. +.+|...|+.++..-|+...+++|+--++
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~---~a~Aesafe~a~~~ypg~~ar~~Y~e~La 204 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK---YADAESAFEVAISYYPGPQARIYYAEMLA 204 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC---chhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999988744 6778889999999999 99999999999999998778888875543
No 190
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=6.4e-06 Score=78.83 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=152.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-C----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 134 (301)
+|+....|.+.....++.++.+.|..++++++..- + .-..+|..+-++...-|.-+...+.|++|.+.. +-..+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHH
Confidence 56666777777778899999999999999999743 3 223455555555555577777888999988754 23557
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT 212 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 212 (301)
+..|..+|...+.+++|.++|+..++.+......|..+|..++.+++-+.|...+.+|++.-|. +.......|++-++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999999999988999999999999999999999999999999998 67788889999999
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
.|+ .+.++..|+-.+.-.|. -...|.-+..
T Consensus 1613 ~GD---aeRGRtlfEgll~ayPK-RtDlW~VYid 1642 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPK-RTDLWSVYID 1642 (1710)
T ss_pred cCC---chhhHHHHHHHHhhCcc-chhHHHHHHH
Confidence 999 99999999999999996 5555554443
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.4e-05 Score=62.43 Aligned_cols=206 Identities=16% Similarity=0.056 Sum_probs=146.5
Q ss_pred CChHHHHHHHHHHhcCCCCcCcC---Cch---hHHHHHHHHHHHHhCCChHHHHHHHHHHHH-hCCC-chhhHHHHHHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSAL---GPD---VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK-QFPE-SKRVGRLEGILL 108 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~~a~~~ 108 (301)
+..+..+.+++..+..++....+ .+. ...+...++...-.-++.++-+.-+...+. .... +.-....-|.++
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 55566666777766554432221 111 122222333333333444444444443333 2223 334555667889
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHH
Q 022205 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQ 184 (301)
Q Consensus 109 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~ 184 (301)
.+.|++++|+..... ..+.++...-..++.++.+++-|.+.+++....+. -.+...||..+... +.+.+
T Consensus 119 ~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 119 MHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred hcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhh
Confidence 999999999987776 34566666667888999999999999999988764 34455566655543 46899
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|..+|+..-...|..+......+.|+..+|+ +++|...++.++..+++ +...+.++..|....|.
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 9999999998888899999999999999999 99999999999999996 99999999999988885
No 192
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.7e-06 Score=66.30 Aligned_cols=173 Identities=9% Similarity=0.037 Sum_probs=93.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
|...-..|+..+.+.-+..+.... ..+-.........+..+..+++-+. .+.+.+..++...|.|.-
T Consensus 129 Ae~~~~lgnpqesLdRl~~L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~i 195 (366)
T KOG2796|consen 129 AELQQYLGNPQESLDRLHKLKTVV-------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVL 195 (366)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHH-------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhh
Confidence 333444566666655554444311 1111222222223445555555433 244555566666666666
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 151 AIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 151 A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
....+.+.++.+ |.+|.....||.+-++.|+.+.|..+|+.+-+.+ ..+..++.+.+.+|.-.++ +..|.
T Consensus 196 S~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn---~a~a~ 272 (366)
T KOG2796|consen 196 SVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN---FAEAH 272 (366)
T ss_pred hHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc---hHHHH
Confidence 666666666665 4556666666666666666666666666443322 1223345555555666666 66666
Q ss_pred HHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCc
Q 022205 224 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNK 260 (301)
Q Consensus 224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~ 260 (301)
..|.+++..||. ++.+..+-++|..-+++..++.+.
T Consensus 273 r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 273 RFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHH
Confidence 666666666663 666666666666666655544433
No 193
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=4.6e-06 Score=81.25 Aligned_cols=164 Identities=12% Similarity=0.049 Sum_probs=118.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----- 132 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----- 132 (301)
....+..++..|++++|...+..+....+. .......++.++...|++++|...++.++...|...
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 344566777888889888888877664331 123344567778888999999999998887544322
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--------
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------- 198 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------- 198 (301)
.+...+|.++...|++++|...+.+++...... ..++..+|.++...|+++.|...+++++.....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 255677888888999999999988888654321 235567888888899999999988888865221
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
....+..+|.+++..|+ +++|...+.+++...
T Consensus 572 ~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~ 603 (903)
T PRK04841 572 HEFLLRIRAQLLWEWAR---LDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHhHHhh
Confidence 12345567888888898 999999988887763
No 194
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.66 E-value=7.9e-06 Score=67.93 Aligned_cols=191 Identities=14% Similarity=0.087 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 131 (301)
...++.+++..+-...++.+++.+-+.-+..-..+ ..+...+|..+..++.++++++.|+.++.....+
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 45667777877777778888888877666543222 2566778999999999999999999999854332
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-----
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----D------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ----- 196 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 196 (301)
..++..+|.++....++++|.-+..++.++..+ + ..+.+.++..+...|..-+|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 237889999999999999999999998876432 2 3456788999999999999999999998764
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----CchhHhhhHHHHHHHHHhhhc
Q 022205 197 -PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 197 -p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~l~~~~~~l~~~~~ 256 (301)
|........+|++|...|+ .+.|..-|+.|...... ..+.++-|.+.|...+.-..+
T Consensus 242 ra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k 304 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNK 304 (518)
T ss_pred hHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 2234567789999999999 99999999999876332 467788888888888766444
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=3.5e-08 Score=65.47 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---C----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---M----ADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
|+-..++..+|.++...|++++|+.+|+++++.. + ..+.++.++|.++...|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556789999999999999999999999999762 2 22567899999999999999999999999976
No 196
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=2.2e-06 Score=70.47 Aligned_cols=157 Identities=11% Similarity=-0.113 Sum_probs=131.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcC
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQG 146 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~g 146 (301)
+...+-.|++.+|-..++++++.+|.+.-++...-..++..|+...-...+++.+.. +|+- ..+...++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344556788899999999999999999999888889999999999999999999987 6665 456667788888999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCCCcHHHH
Q 022205 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~~~~A 222 (301)
-+++|.+.-.+++++||.+..+...++.++...|++.++.++..+.-....... .-|...|.++...+. ++.|
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~a 266 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKA 266 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHH
Confidence 999999999999999999999999999999999999999998877543332221 135566777888888 9999
Q ss_pred HHHHHHHh
Q 022205 223 KKYYASTI 230 (301)
Q Consensus 223 ~~~~~~al 230 (301)
++.|.+-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 99998865
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.64 E-value=1.3e-06 Score=72.72 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
|..+.....+.+..+.|..+|.++....+....+|...|.+.... ++.+.|..+|+.+++..|.++..|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 334444444444455555555555544444455555555554442 3333355555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 180 QMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
++.+.|...|++++..-|... .+|..+...-...|+ .+...+.+.++.+..|
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFP 138 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhh
Confidence 555555555555555444333 345555555555555 5555555555555544
No 198
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=4.4e-05 Score=59.85 Aligned_cols=218 Identities=17% Similarity=0.063 Sum_probs=145.3
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--- 133 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 133 (301)
+....+.+-|..+--..+|+.|=..|-++-+..- ++....+.-+.-.++.++..+|+.++++++++..+...
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455666666666667777777777766655431 22333334444444557999999999999986654433
Q ss_pred ---HHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH--
Q 022205 134 ---LHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-- 201 (301)
Q Consensus 134 ---~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 201 (301)
.+..+|.+|..- .++++|+.+|+++-+..... -..+...+..-...++|.+|+..|+++....-+++.
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 344677777654 88999999999998876543 234556677777889999999999999877666643
Q ss_pred -----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhhHHHHHHHHHhhhc----cCCcccccchHHHHH
Q 022205 202 -----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIAQLTK----GRNKEDKESPELQSL 271 (301)
Q Consensus 202 -----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l~~~~~----~~~~~~~~~~~~~~~ 271 (301)
..+.-|.|++...+ .-.+...+++-.+++|. ...|-.--+......+..... ...+......+|..|
T Consensus 192 ys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W 268 (288)
T KOG1586|consen 192 YSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQW 268 (288)
T ss_pred hHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHH
Confidence 34556788888888 88888888888899997 555554444443333332110 111122336778888
Q ss_pred HHHHHHHHHHh
Q 022205 272 AAAALEKDYKQ 282 (301)
Q Consensus 272 ~~~~l~~~~~~ 282 (301)
....|..|-+.
T Consensus 269 ~ttiLlkiK~s 279 (288)
T KOG1586|consen 269 KTTILLKIKKS 279 (288)
T ss_pred HHHHHHHHHHH
Confidence 88877777553
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.59 E-value=2.7e-06 Score=60.31 Aligned_cols=92 Identities=22% Similarity=0.144 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSL 179 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~ 179 (301)
.|..+...|+.+.|++.|.+++...|..+.+|++.++.+.-+|+.++|+..+++++++.... ..++...|.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555555555555555555555555555555553322 22344445555555
Q ss_pred ccHHHHHHHHHHHHhh
Q 022205 180 QMYKQAAFCYEELILS 195 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~ 195 (301)
|+-+.|...|+.+-++
T Consensus 129 g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQL 144 (175)
T ss_pred CchHHHHHhHHHHHHh
Confidence 5555555555444443
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.57 E-value=4.5e-06 Score=59.20 Aligned_cols=101 Identities=11% Similarity=0.010 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVL 210 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~ 210 (301)
+-.-|.+....|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+.++|+..+.+++++..+.. .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999999875443 3688899999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccCCCchh
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (301)
...|+ -+.|...|+.+-++.+. ..+
T Consensus 126 Rl~g~---dd~AR~DFe~AA~LGS~-FAr 150 (175)
T KOG4555|consen 126 RLLGN---DDAARADFEAAAQLGSK-FAR 150 (175)
T ss_pred HHhCc---hHHHHHhHHHHHHhCCH-HHH
Confidence 99999 99999999999998763 443
No 201
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=8.2e-06 Score=79.52 Aligned_cols=167 Identities=15% Similarity=0.057 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHH
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------DPV 133 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 133 (301)
.....++..+...|+++.|...++.++...|... .+...+|.++...|++++|...+++++..... ...
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 3444567888899999999999999988655322 34567888899999999999999999874322 123
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----CH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----VP 200 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~ 200 (301)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+++++..... ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 5677899999999999999999998886321 1234567899999999999999999999875321 24
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
..+..+|.++...|+ ++.|...+.++..+.+
T Consensus 613 ~~~~~la~~~~~~G~---~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 613 QCLAMLAKISLARGD---LDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence 456678999999999 9999999999977643
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.56 E-value=8.3e-05 Score=63.48 Aligned_cols=169 Identities=14% Similarity=-0.003 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHH---cCCHHHHHHHHHH-HHhcCCCCHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVL 134 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~ 134 (301)
...+..++-.+|-+..+|+.-+.+.+.+-.. .++.+.+..+.|.++-+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4556678888899999999999999988876 45677888899999999 8999999999999 55677888999
Q ss_pred HHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH-H------H-hh--
Q 022205 135 HKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE-L------I-LS-- 195 (301)
Q Consensus 135 ~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-a------l-~~-- 195 (301)
+..+|.+|... ...++|+..|.++.+.+|+. ..-.+++.++...|.-.....-.++ . + +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 99999998652 24789999999999999643 3344566666666542222111111 1 1 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 196 --QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 196 --~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.-.+...+..++.+....|+ +++|..++++++++.|.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence 12344556778888999999 99999999999999885
No 203
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.1e-07 Score=72.68 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=59.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
|..|+....|+.|+.+|.+++..+|..+..+...+.++++..+++.+....+++++.+|+...+.+.+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 55555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHh
Q 022205 151 AIEWLNKYLET 161 (301)
Q Consensus 151 A~~~~~~~l~~ 161 (301)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666443
No 204
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.55 E-value=4.4e-06 Score=76.65 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=119.3
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
.++.+++..|+....++++.+|+.+.+..+.|.+++++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 36779999999999999999999999999999999999999999999988888888888899999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (301)
+|++++..+|+ -.....+-++|.+.+.|.+-.+.--+..+..|.++........+.+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 99999999999 8888889999999999887666666666677887765544444433
No 205
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.53 E-value=2.4e-07 Score=53.83 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
.+|..+|.+|...|++++|+.+|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345555555555555555555555555555555555555543
No 206
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.50 E-value=6.3e-06 Score=68.72 Aligned_cols=138 Identities=11% Similarity=0.057 Sum_probs=112.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 144 (301)
+|..+.....+.+..+.|..+|.++.+..+.+..+|...|.+... .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455556666777779999999999996556678888888888666 5677779999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 145 QGNFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
.|+.+.|..+|++++..-|... ..|......-...|+.+...++.+++.+..|.+....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 9999999999999998877655 5888888888889999999999999999988865543
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.8e-07 Score=71.26 Aligned_cols=93 Identities=14% Similarity=-0.007 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (301)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~ 182 (301)
-.|..++...+|+.|+..|.++|..+|..+..|.+.+.++++..+++.+.....+++++.|+.....+.+|.+......|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34667777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 022205 183 KQAAFCYEELILS 195 (301)
Q Consensus 183 ~~A~~~~~~al~~ 195 (301)
+.|+.+++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999654
No 208
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.47 E-value=2.1e-05 Score=68.27 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=123.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------C-----
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--------------P----- 129 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------p----- 129 (301)
.+.+...+..+.+.-++...++++.+|+++.++.+++.- ......+|..+|+++++.. +
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 445556788999999999999999999999999888752 2234567777777776511 0
Q ss_pred ----C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCH
Q 022205 130 ----L--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVP 200 (301)
Q Consensus 130 ----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~ 200 (301)
. ...+..+++.+..+.|+.++|++.++..++.+|. +..+..+|..++...+.|.++...+.+.=.+ -|...
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 0 1335678999999999999999999999998875 3568899999999999999999888875433 24555
Q ss_pred HHHHHHHHHHHHc-CC------------CCcHHHHHHHHHHHhcccCCCchh
Q 022205 201 LYHLAYADVLYTL-GG------------VDNILLAKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 201 ~~~~~la~~~~~~-~~------------~~~~~~A~~~~~~al~~~p~~~~~ 239 (301)
...+.-|-+-.+. ++ ...-..|++...+|++.||. -..
T Consensus 331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH-Vp~ 381 (539)
T PF04184_consen 331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH-VPK 381 (539)
T ss_pred HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC-Cch
Confidence 5555544433321 11 11134578999999999995 443
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.46 E-value=2.6e-05 Score=71.77 Aligned_cols=173 Identities=13% Similarity=0.048 Sum_probs=128.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 189 (301)
..+++.+|+....+.++.+|+...+...-|.++.++|+.++|..+++..-...+++..+.-.+-.+|..++++++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44889999999999999999999999999999999999999998888887888888889999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccchHHH
Q 022205 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQ 269 (301)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (301)
++++..+|. ......+=.+|.+-++ |.+=.+.--+..+..|. + ++|-+..+...+......... ....+.
T Consensus 101 e~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk-~--~yyfWsV~Slilqs~~~~~~~---~~~i~l 170 (932)
T KOG2053|consen 101 ERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK-R--AYYFWSVISLILQSIFSENEL---LDPILL 170 (932)
T ss_pred HHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc-c--cchHHHHHHHHHHhccCCccc---ccchhH
Confidence 999999999 7777777788888887 76554444444456664 3 344444444433321111111 114566
Q ss_pred HHHHHHHHHHHHhhCC-hhhhHHH
Q 022205 270 SLAAAALEKDYKQRAP-AKLLLLT 292 (301)
Q Consensus 270 ~~~~~~l~~~~~~~~~-~~~~~~~ 292 (301)
..|.....+.....|+ +..+|+.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHH
Confidence 6777777777776643 3344433
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.44 E-value=6.5e-07 Score=52.00 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345566666666666666666666666666666666666553
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.35 E-value=0.00018 Score=64.22 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=148.6
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-CC-----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-- 131 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-- 131 (301)
+|.+...|.... -+..|+..+-+..+..+++. +| .-...|...|..|...|+.+.|...|+++....-..
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 777777776643 35568888888888888764 45 334678899999999999999999999999865322
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
..+|..-|.......+++.|.++++++...-.. +...|..+++.....|-++.....|.+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 568999999999999999999999998754211 245788899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
.+.+.--.|..-.++|..+....- +++|.+.|++.+.+.|-+++--.|...+
T Consensus 503 iidLriaTPqii~NyAmfLEeh~y---feesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKY---FEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHH---HHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 999998999999999999999999 9999999999999987545544444443
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.33 E-value=0.00037 Score=59.62 Aligned_cols=197 Identities=15% Similarity=0.016 Sum_probs=131.9
Q ss_pred hHHHHHhHHHhhhhcCCc---c-HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHh---C
Q 022205 5 TEETQLNRLENQVDNGGG---G-AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD---C 77 (301)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~---~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~ 77 (301)
+...+|.+++.++..... + ...++-.+ .+.++.+..+.++..+-.-+. .. .+....+-++.|.++.+ .
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSy--RdiqdydamI~Lve~l~~~p~--~~-~~~~~~i~~~yafALnRrn~~ 195 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSY--RDIQDYDAMIKLVETLEALPT--CD-VANQHNIKFQYAFALNRRNKP 195 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHh--hhhhhHHHHHHHHHHhhccCc--cc-hhcchHHHHHHHHHHhhcccC
Confidence 344556666666554222 1 23333333 345677778877777554311 11 34566777888999999 8
Q ss_pred CChHHHHHHHHH-HHHhCCCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205 78 QCLDVAKDCIKV-LQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (301)
Q Consensus 78 ~~~~~A~~~~~~-~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 147 (301)
|+.+.|+.++.. +....+.+++.+.+.|.+|-.. ...++|+.+|.++...+|+ ...-.+++.++...|.
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 999999999999 4455568899999999988543 3578999999999999965 4445677777777776
Q ss_pred hhHHHHHHHHHH--------Hh----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 148 FPTAIEWLNKYL--------ET----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 148 ~~~A~~~~~~~l--------~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
..+....+++.. +. .-.+-+....++.+..-.|++++|+..+++++...|..+.....+.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ 346 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLE 346 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHH
Confidence 444433333222 11 1123344556788888899999999999999999887765444333
No 213
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00011 Score=60.71 Aligned_cols=152 Identities=18% Similarity=0.038 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHH---HHHHHHHHHH
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHD---AWRELAEIYV 177 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~---~~~~lg~~~~ 177 (301)
...+.+....|++.+|...+.+.+...|.+..++..--.+++.+|+.......+++.+.. +|+-|- +.-.++-.+.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 344566777899999999999999999999999999999999999999999999999977 666543 3345667778
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHHHHHhh
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~~l~~~ 254 (301)
..|-|++|.+...++++++|.+..+....+.++...|+ ++++.++..+.-..-.. -....||-.++++.+-+..
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 89999999999999999999999999999999999999 99999998775432111 1233456777777765554
Q ss_pred hc
Q 022205 255 TK 256 (301)
Q Consensus 255 ~~ 256 (301)
.+
T Consensus 264 e~ 265 (491)
T KOG2610|consen 264 EK 265 (491)
T ss_pred hH
Confidence 43
No 214
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=0.0012 Score=60.94 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=118.9
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHH----------HHhCC----------
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVL----------QKQFP---------- 95 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~----------~~~~p---------- 95 (301)
...+.+++++++.- + .-..-..|++.|..+-..++.+.|+.+|+++ +..+|
T Consensus 839 ~g~w~eA~eiAE~~-------D--RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 839 QGMWSEAFEIAETK-------D--RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred cccHHHHHHHHhhc-------c--ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 45566666665531 1 1134567888888888889999999998754 33444
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------cCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (301)
.++..|.-.|.++...|+.+.|+.+|..+-. ....+..+.+.+|..|...|++.+|+.+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455677789999999999999999988743 2345667889999999999999999999
Q ss_pred HHHHHH------hcCCC--------------HHHHHHHHHHHHHcc-cHHHHHHHHHHH------H--------------
Q 022205 155 LNKYLE------TFMAD--------------HDAWRELAEIYVSLQ-MYKQAAFCYEEL------I-------------- 193 (301)
Q Consensus 155 ~~~~l~------~~p~~--------------~~~~~~lg~~~~~~~-~~~~A~~~~~~a------l-------------- 193 (301)
|.++-. +...+ +.-....+..|...| +++.|+..|-+| +
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 887543 32211 111112233344443 444454444332 1
Q ss_pred ---hhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 194 ---LSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 194 ---~~~p-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.++| .+|....+-+..+....+ |++|+..+-.
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~~ 1105 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLCL 1105 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence 2244 457777777888877778 9988876543
No 215
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=8.1e-07 Score=48.22 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205 155 LNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A 185 (301)
|+++++++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444444444444
No 216
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=7.3e-06 Score=70.60 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=118.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRVAI 141 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~l~~~ 141 (301)
...++...+...+..-.+.++....+++.+..+.+..+...|++.+|.+.+... +...|. .-..|.++|.+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 344566677788888888888887889999999999999999999999887654 333333 22367899999
Q ss_pred HHHcCChhHHHHHHHHHHHh---------cC---------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLET---------FM---------ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~---------~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
++..|.+.-+..+|.++++. .| ......++.|..|...|+.-.|..||.++....-.+|..|
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 99999999999999999961 11 2356788999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 022205 204 LAYADVLYTLG 214 (301)
Q Consensus 204 ~~la~~~~~~~ 214 (301)
.++|+|.....
T Consensus 373 LRlAEcCima~ 383 (696)
T KOG2471|consen 373 LRLAECCIMAL 383 (696)
T ss_pred HHHHHHHHHHh
Confidence 99999987553
No 217
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.29 E-value=1.8e-06 Score=74.17 Aligned_cols=109 Identities=20% Similarity=0.077 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 147 (301)
-..+...+..+.|+.|+..+.++++++|+++..+-.++..+...+++..|+..+.++++.+|....+|...|.+....+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34466667778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 148 FPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
+.+|...|+......|+++.+...+-.|-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 88888888888888888887776665553
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.27 E-value=3.4e-05 Score=64.24 Aligned_cols=211 Identities=11% Similarity=-0.040 Sum_probs=149.8
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLE 109 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~ 109 (301)
..+.+.++..|...+.... + .-..+..+..+..+..+.|.+++++.+.-..++.+- .-..++..++..+.
T Consensus 19 s~~~~~al~~w~~~L~~l~--~--~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLS--D--LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred CchHHHHHHHHHHHHHHHH--H--HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666554311 0 113455666677788888999888776555444332 12346778888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVS 178 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~ 178 (301)
...++.+++.+....+..-...+ .+...+|..+..++.++++++.|+.+++.-.++ ..++..||..|..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 88999999998888877543333 467778999999999999999999999875433 3478899999999
Q ss_pred cccHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----CchhHhhh
Q 022205 179 LQMYKQAAFCYEELILSQP----TVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFG 243 (301)
Q Consensus 179 ~~~~~~A~~~~~~al~~~p----~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~ 243 (301)
..++++|+-+..++.++.. ++. .+++.++..+..+|. .-.|.++.+++.++.-. ...+...-
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999999987642 222 367888999999999 99999999998876322 23444445
Q ss_pred HHHHHHHHHh
Q 022205 244 ICLCSSAIAQ 253 (301)
Q Consensus 244 l~~~~~~l~~ 253 (301)
++..|...++
T Consensus 252 ~aDIyR~~gd 261 (518)
T KOG1941|consen 252 FADIYRSRGD 261 (518)
T ss_pred HHHHHHhccc
Confidence 5555555554
No 219
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.26 E-value=1.8e-06 Score=74.25 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=96.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
.+.-.+..+.|+.|+..|.++++++|+++..+...+..+.+.+++..|+.-+.++++.+|....+|+..|.++...+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 35556667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
+|...|+....+.|+++.+...+..|-...
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999888777764433
No 220
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=2.6e-06 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555666666666666666666666666554
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.00018 Score=58.59 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=110.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChh
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFP 149 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~ 149 (301)
+...+..|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+... ........+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 566788899999999999999999999999999999999999999998777654332222211 1111122333333333
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
+ +..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..+..+- .+..+...+-.++...|. -+.+...|+
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~~R 296 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLAYR 296 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence 2 2346667778999999999999999999999999999888887653 446677777788887776 444444444
Q ss_pred H
Q 022205 228 S 228 (301)
Q Consensus 228 ~ 228 (301)
+
T Consensus 297 R 297 (304)
T COG3118 297 R 297 (304)
T ss_pred H
Confidence 4
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=2e-06 Score=46.65 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
+|+++++++|+++.+|+++|.+|...|+ +++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence 4789999999999999999999999999 98886
No 223
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.19 E-value=5.4e-06 Score=45.01 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.9e-05 Score=60.01 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
...+.+++.|++..|+|-++++....++...|++..+++..|.++...=+ ..+|...|.++++++|.
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence 44567788888888888888888888888888888888888888888777 88888888888888885
No 225
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.8e-05 Score=60.60 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLE--------DNPLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
.++...|+-++..|+|.+|...|+.++. ..|.++ ..+.++++|+...|++-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4566778888899999999999988874 234433 3677888999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.+|.+..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 999999999999999888888899999999999998876543
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00081 Score=53.32 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----PLD 131 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~ 131 (301)
....|..-+.++-..++|++|..++.++.+-...+ ..++-..+.+......+.++..+|+++.... |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45678887888888899999999999999654432 2344556677777889999999999998743 444
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh----C--CCC
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILS----Q--PTV 199 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~ 199 (301)
...-...+--....-++++|+++|++++.....+ .+.+...+.++.+...|.+|-..+.+-... + |+.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 3333344444556778999999999998875444 345567788899999999998888765422 2 232
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
...+.....+|....+ |..|...|+.+.+.
T Consensus 190 ~k~~va~ilv~L~~~D---yv~aekc~r~~~qi 219 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHD---YVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHHHhhHHH---HHHHHHHhcchhcC
Confidence 3344444455666668 99999999987765
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.13 E-value=6e-05 Score=67.45 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAI 152 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 152 (301)
..+.+.|..++....+.+|+..-..+..|+++...|+.++|++.|++++.....- ...++.++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456677788888888888877777788888888888888888888777432221 225667777777788888888
Q ss_pred HHHHHHHHhcCCCHHH-HHHHHHHHHHcccH-------HHHHHHHHHHHh
Q 022205 153 EWLNKYLETFMADHDA-WRELAEIYVSLQMY-------KQAAFCYEELIL 194 (301)
Q Consensus 153 ~~~~~~l~~~p~~~~~-~~~lg~~~~~~~~~-------~~A~~~~~~al~ 194 (301)
.+|.+..+.+.-+... .+..|.++...|+. ++|...|.++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8887777766554333 34456666677777 666666666543
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.13 E-value=0.00024 Score=63.61 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=102.7
Q ss_pred CCChHHHHHHHHHHHHhCC-Cchhh-HHHHHH-------HHH--HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 77 CQCLDVAKDCIKVLQKQFP-ESKRV-GRLEGI-------LLE--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p-~~~~~-~~~~a~-------~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.||-+.++..+..+.+... ..+-+ +.+++. +-. .....+.|...+.......|+.....+..|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 4777888888887766221 11111 111111 011 234567788888888888888888888888888888
Q ss_pred CChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcH-
Q 022205 146 GNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNI- 219 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~- 219 (301)
|+.++|+..|++++..... ..-.++.+|.++..+++|++|..+|.+.++.+.-. ..+.+..|.|+...|+ .
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~ 357 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE 357 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence 8888888888887742221 13356778888888888888888888888765432 3455666788888887 5
Q ss_pred ------HHHHHHHHHHhccc
Q 022205 220 ------LLAKKYYASTIDLT 233 (301)
Q Consensus 220 ------~~A~~~~~~al~~~ 233 (301)
++|...|.++-.+.
T Consensus 358 ~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 67777776665543
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.09 E-value=3e-05 Score=66.95 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=115.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HHhcCC--------CHHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWRELAEI 175 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~lg~~ 175 (301)
...+..+.+..-+..-.+.+.....+.+.+....++.++..|++.+|.+.+... +...|. ..-+|+++|-+
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence 334555566666666666666667788888899999999999999999987653 333333 23468899999
Q ss_pred HHHcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc
Q 022205 176 YVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN 237 (301)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (301)
+++.|.|.-+..+|.+|+. . .| ....+.++.|..|...|+ .-.|..+|.+++..... +
T Consensus 293 h~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh~-n 368 (696)
T KOG2471|consen 293 HYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFHR-N 368 (696)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHhc-C
Confidence 9999999999999999995 1 11 224588999999999999 99999999999999885 9
Q ss_pred hhHhhhHHHHHHHHHh
Q 022205 238 TKALFGICLCSSAIAQ 253 (301)
Q Consensus 238 ~~~~~~l~~~~~~l~~ 253 (301)
++.|..++.|+.--.+
T Consensus 369 PrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 369 PRLWLRLAECCIMALQ 384 (696)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999876443
No 230
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8.3e-05 Score=61.27 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
+..-|+-|+...+|..|+..|.+.+...-.+ ...|.+.+.+.+..|+|..|+.-+.+++.++|++..++++-|.|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 3344555666666666666666666554333 334566666666677777777777777777777777777777777
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccC
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
+.+.+ +.+|+...+..+..+.
T Consensus 164 ~eLe~---~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 164 LELER---FAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHH---HHHHHHHHhhhhhhhH
Confidence 77777 7777777666666554
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.0022 Score=54.38 Aligned_cols=167 Identities=14% Similarity=0.020 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGIL--LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
+-+...-++..+-.|+++.|.+-|+.++. +|+.- ..-+.|.+ ..+.|..+.|..+-+.+....|.-+.++...-..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 33444457788889999999999988875 45322 22233333 3467999999999999999999999988888888
Q ss_pred HHHcCChhHHHHHHHHHHHhc---CCCH---HHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 142 AKAQGNFPTAIEWLNKYLETF---MADH---DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~---p~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
.+..|+|+.|+++........ ++-. .+-..-+..... .-+...|...-..++++.|+....-..-+..++..|
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 899999999999988755432 2211 111111221111 234667777778888888888777777778888888
Q ss_pred CCCcHHHHHHHHHHHhcccCC
Q 022205 215 GVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~ 235 (301)
+ ..++-..++.+.+..|.
T Consensus 278 ~---~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 278 N---LRKGSKILETAWKAEPH 295 (531)
T ss_pred c---hhhhhhHHHHHHhcCCC
Confidence 8 88888888888888774
No 232
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.00 E-value=0.0012 Score=58.04 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHH
Q 022205 80 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~ 154 (301)
-+++..++++++.... .+...++.++..-...-+ ++.....+++++.....++. +|..+...-.+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4677778888776443 344445555554443333 66777788888775443333 556666666667778888999
Q ss_pred HHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc-
Q 022205 155 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL- 232 (301)
Q Consensus 155 ~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~- 232 (301)
|.++.+.-.....++..-|.+ |.-.++..-|..+|+-.++..++.+..-..+...+..+|+ -..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhcc
Confidence 999887644333455444444 4557899999999999999999999998888899999999 88999999999987
Q ss_pred -cCCCchhHhhhHHHHHHHHHhhh
Q 022205 233 -TGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 233 -~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
.|+...+.|-.+..--++.|++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHH
Confidence 55545566655555455555543
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.93 E-value=3.3e-05 Score=41.82 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
.+++.+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566666666666666666666666666653
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.90 E-value=0.00067 Score=50.70 Aligned_cols=112 Identities=17% Similarity=0.018 Sum_probs=70.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA-IEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
|......++...++..+++++.........-.. ...|-.. ...++.. ...+...++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 444556677788888888887754322110000 0111111 1112111 2345667888888899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.|+..+++++..+|.+..++..+-.++...|+ ...|+..|+++.+.
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99998888887543
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00095 Score=52.56 Aligned_cols=171 Identities=13% Similarity=0.064 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh------hHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC---
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD--- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~--- 131 (301)
+..+.|.. +.-+++.++..+|..+++++++++.+-.+ .+.-+|.+|... .++++|+.+|+.+-+.....
T Consensus 72 Daat~Yve-A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 72 DAATTYVE-AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hHHHHHHH-HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 34556666 44456677999999999999998764433 344788888876 89999999999997743322
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
-..+...+..-...++|.+|+..|+++....-+++ ..++.-|.|++-..+.-.+...+++...++|....
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 22455566677788999999999999988766664 24556677888778888888889999999997654
Q ss_pred H--HHHHHHHHHH--cCCCCcHHHHHHHHHHHhccc
Q 022205 202 Y--HLAYADVLYT--LGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 202 ~--~~~la~~~~~--~~~~~~~~~A~~~~~~al~~~ 233 (301)
. ...+..+... .++.+.+.+++..|...-+++
T Consensus 231 sREckflk~L~~aieE~d~e~fte~vkefDsisrLD 266 (288)
T KOG1586|consen 231 SRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLD 266 (288)
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHH
Confidence 2 2223332222 223233566666665554444
No 236
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=3.4e-05 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+.+|+++|.++..+|+ +++|+.+|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD---YEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCC---chHHHHHHHHHHHHCcC
Confidence 3578999999999999 99999999999999995
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.88 E-value=0.00091 Score=49.96 Aligned_cols=116 Identities=14% Similarity=0.045 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 146 (301)
+...+......++...++..+.+++....+..-.-... ..-.......++.. ...+...++..+...|
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 33446666778999999999999999875332111000 01111122222222 2345677888888999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
++++|+..+.+++..+|.+-.+|..+-.++...|+...|+..|++...
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887753
No 238
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=9.7e-05 Score=60.87 Aligned_cols=97 Identities=21% Similarity=0.163 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 175 (301)
.+.--|+-|+..++|..|+..|.+.|...-.+ ...|.+.+.+....|+|..|+.-+.+++..+|.+..+++.=+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34455777777788888888888887754333 33677777788888888888888888888888888888888888
Q ss_pred HHHcccHHHHHHHHHHHHhhC
Q 022205 176 YVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~~~ 196 (301)
++.+.++..|+..++..+.++
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 888888888877777776554
No 239
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0094 Score=47.94 Aligned_cols=184 Identities=11% Similarity=0.144 Sum_probs=142.0
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHhCCCchhhH
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDC-QCLDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
.++++++.+...+. .+..++.+....+.- +|.+.++|...-.+.-.. .+..+-+.++..++..+|++-.+|
T Consensus 44 ~~m~YfRAI~~~~E-~S~RAl~LT~d~i~l-------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW 115 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNE-KSPRALQLTEDAIRL-------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW 115 (318)
T ss_pred HHHHHHHHHHhccc-cCHHHHHHHHHHHHh-------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence 45667776655544 445566666666654 777777776554443333 467788999999999999999999
Q ss_pred HHHHHHHHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c
Q 022205 102 RLEGILLEAKGLWA-EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-L 179 (301)
Q Consensus 102 ~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~ 179 (301)
..+-.+....|++. .-+++.+.++..+..+-.+|...-.+....+.++.-+.+..+.++.+-.+-.+|...--+... .
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~ 195 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK 195 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence 99999999999888 888999999999999999999999999999999999999999999988777777643222111 1
Q ss_pred -----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC
Q 022205 180 -----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG 214 (301)
Q Consensus 180 -----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~ 214 (301)
-..+.-+.+..+.+.+.|++..+|..|.-++.. .|
T Consensus 196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 234556778888899999999999999887775 44
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.81 E-value=0.013 Score=50.63 Aligned_cols=150 Identities=18% Similarity=0.122 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-C-C---
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-P-T--- 198 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-~--- 198 (301)
.......|..++.+....|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+... . .
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 445566788889999999999999999988887652 246777788888999999999999888877611 1 0
Q ss_pred ----------------------C-------HHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205 199 ----------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (301)
Q Consensus 199 ----------------------~-------~~~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 243 (301)
. ..++..+|...... +. .+++...|.++++++|. ..++|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~ 297 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHS 297 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHH
Confidence 1 12455555555555 55 99999999999999996 8889999
Q ss_pred HHHHHHHHHhhhccCCccc--ccchHHHHHHHHHHHHHHH
Q 022205 244 ICLCSSAIAQLTKGRNKED--KESPELQSLAAAALEKDYK 281 (301)
Q Consensus 244 l~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 281 (301)
++..+..+-.......... ....+....+...+.+...
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~ 337 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALS 337 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHh
Confidence 9998888876444322211 1334444444444444433
No 241
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.80 E-value=0.0037 Score=53.29 Aligned_cols=145 Identities=12% Similarity=0.018 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHcC------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 86 CIKVLQKQFPESKRVGRLEGILLEAKG------------LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
-+++.++.+|.+..+|..+.......- -.+.-+.+|++|++.+|++...+..+-.+.....+.++...
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 356666677777777766655433321 13556777888888888888777777777777777777777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHHH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLYT 212 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~~ 212 (301)
-+++++..+|+++..|...-..... .-.+......|.+++..-. . -..+..+++.....
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777654443332 2245666666666663210 0 01245556666777
Q ss_pred cCCCCcHHHHHHHHHHHhccc
Q 022205 213 LGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~ 233 (301)
.|- .+.|+..++-.++++
T Consensus 167 aG~---~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 167 AGY---TERAVALWQALLEFN 184 (321)
T ss_pred CCc---hHHHHHHHHHHHHHH
Confidence 777 888888888877763
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.79 E-value=0.0023 Score=56.00 Aligned_cols=136 Identities=18% Similarity=0.018 Sum_probs=101.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------------------- 164 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------- 164 (301)
.-..+..+...-++.-++|++.+|+.+.+|.-++.- ......++..+++++++....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 344566889999999999999999999988777652 233456777777777654210
Q ss_pred C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc-CCCc
Q 022205 165 D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT-GGKN 237 (301)
Q Consensus 165 ~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (301)
+ +.+...+|+|..+.|+.++|++.|+..++..|. +..++.++..++..++. +.++...+.+--+.. |. .
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~---Yad~q~lL~kYdDi~lpk-S 329 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA---YADVQALLAKYDDISLPK-S 329 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC---HHHHHHHHHHhccccCCc-h
Confidence 0 224457999999999999999999999988775 46789999999999999 999999988854332 32 4
Q ss_pred hhHhhhHHHH
Q 022205 238 TKALFGICLC 247 (301)
Q Consensus 238 ~~~~~~l~~~ 247 (301)
....|.-++.
T Consensus 330 Ati~YTaALL 339 (539)
T PF04184_consen 330 ATICYTAALL 339 (539)
T ss_pred HHHHHHHHHH
Confidence 4444554543
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.0032 Score=48.31 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
..++..+...|++++|+..++.++....+. +-+-..||.+....|.+++|+..+...-.. .-.+......|+++..
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~ 171 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence 344555556666666666666655432221 223445666666666666666555432210 0012223445666666
Q ss_pred cCCCCcHHHHHHHHHHHhcccC
Q 022205 213 LGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p 234 (301)
.|+ -++|+..|.+++...+
T Consensus 172 kg~---k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 172 KGD---KQEARAAYEKALESDA 190 (207)
T ss_pred cCc---hHHHHHHHHHHHHccC
Confidence 666 6666666666666544
No 244
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0013 Score=60.78 Aligned_cols=164 Identities=16% Similarity=0.141 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHH--------HH---hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVL--------QK---QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--- 129 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~--------~~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--- 129 (301)
-.+|.++|..+....+.+-|.-++-.+ ++ .+|+ ..-...|.+....|..++|...|++.-+.+-
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNK 834 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNK 834 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777666554221 11 1222 1222334444555666666666655533110
Q ss_pred ---------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHH----------HHhcC----------CCHHH
Q 022205 130 ---------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKY----------LETFM----------ADHDA 168 (301)
Q Consensus 130 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------l~~~p----------~~~~~ 168 (301)
.-...|++.+.-+...++.+.|+++|+++ +.-+| .++..
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 01236778888888889999999999883 22233 23556
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhh---------------------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILS---------------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
|.-.|......|+.+.|+.+|..|-.. ...+-.+.+.+|..|...|+ +.+|+.+|.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~Av~FfT 991 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD---VVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH---HHHHHHHHH
Confidence 667888888999999999999887522 23455688899999999999 999999998
Q ss_pred HHhcc
Q 022205 228 STIDL 232 (301)
Q Consensus 228 ~al~~ 232 (301)
+|-..
T Consensus 992 rAqaf 996 (1416)
T KOG3617|consen 992 RAQAF 996 (1416)
T ss_pred HHHHH
Confidence 86443
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.74 E-value=0.013 Score=50.52 Aligned_cols=189 Identities=16% Similarity=0.017 Sum_probs=120.2
Q ss_pred ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC----CchhhHHHHHHHHHHcCC
Q 022205 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGL 113 (301)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~ 113 (301)
.++.++..-..++... ....+....+...+..+...|.++.|...+.++....+ ..+.+.+..+.++...|+
T Consensus 124 ~~~~il~~R~~~l~~~----~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 124 VWEPILSLRRLVLSLI----LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC
Confidence 4455555544455421 22335667788889999999999999999998887653 256777888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------ccH
Q 022205 114 WAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL------QMY 182 (301)
Q Consensus 114 ~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~------~~~ 182 (301)
..+|+..++..+....... .....+...... ............ ......++..+|...... +..
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~ 274 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESS 274 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccH
Confidence 9999999988887222211 000001000000 000000000000 011145667777777776 788
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC--------------CcHHHHHHHHHHHhcccCC
Q 022205 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV--------------DNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--------------~~~~~A~~~~~~al~~~p~ 235 (301)
++++..|..++..+|....+|..+|..+...-+. +-...|+..|-+++...|.
T Consensus 275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999998888888888777654220 1135699999999999885
No 246
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=1.2e-05 Score=66.31 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=59.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 184 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~ 184 (301)
+.-.+..|.++.|++.|..++..+|.....+...+.++..++++..|+.-+..+++++|+...-+-..|.+...+|+|++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33444556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhC
Q 022205 185 AAFCYEELILSQ 196 (301)
Q Consensus 185 A~~~~~~al~~~ 196 (301)
|...+..+++++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 666666666554
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.74 E-value=6.7e-05 Score=40.60 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+|+.+|.+|...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555554444
No 248
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.72 E-value=3.9e-05 Score=63.39 Aligned_cols=93 Identities=15% Similarity=-0.034 Sum_probs=61.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (301)
+...+..|.++.|+..+..++.++|.....+..++.++...++...|+..|..++.++|+....+...|.....+|+|.+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 44455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcC
Q 022205 151 AIEWLNKYLETFM 163 (301)
Q Consensus 151 A~~~~~~~l~~~p 163 (301)
|...+..+++++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 6666666666553
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.0057 Score=47.01 Aligned_cols=128 Identities=12% Similarity=0.010 Sum_probs=95.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchh---hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKA 144 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 144 (301)
+......+.. +......+....+|.+.. +...++..+...+++++|+..++.++....+. ..+-.+++.+...
T Consensus 60 ~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q 138 (207)
T COG2976 60 AIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ 138 (207)
T ss_pred HHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 3333444544 666667777777765543 34567888899999999999999998744433 2367789999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
.|.+++|+..+......+- .+......|+++...|+-++|+..|++++...++.+
T Consensus 139 ~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 139 QKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999887543221 133455689999999999999999999999875543
No 250
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.70 E-value=0.0052 Score=53.10 Aligned_cols=157 Identities=15% Similarity=0.035 Sum_probs=115.5
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh---------c-----C------------
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE---------D-----N------------ 128 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~-----~------------ 128 (301)
...+|.+.-+ ..++.+|-+..++..++.++..+|+...|-+.+++++= . +
T Consensus 21 v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 21 VQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 4445555433 34578899999999999999999999999999888862 1 1
Q ss_pred CCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCC-----C
Q 022205 129 PLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQP-----T 198 (301)
Q Consensus 129 p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p-----~ 198 (301)
+.|.. +.+.......+.|-+..|.++++-.+.++|. ||-.... +-....+.++|+--+..++....... .
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 12222 5666777888999999999999999999998 7755444 44445567888877877776554211 1
Q ss_pred CHHHHHHHHHHHHHcCCC------------CcHHHHHHHHHHHhcccCC
Q 022205 199 VPLYHLAYADVLYTLGGV------------DNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~------------~~~~~A~~~~~~al~~~p~ 235 (301)
-|...+..+-+++..++. ++.+.|...+.+|+...|.
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 345667788888888881 1128999999999999995
No 251
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.013 Score=51.13 Aligned_cols=168 Identities=11% Similarity=0.034 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhC---CC-------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CH-
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF---PE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP- 132 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~- 132 (301)
..++.++.+-+-.|++.+|+..+..+.+.. |. .+.+++++|......+.++.|...|..+.+.... +.
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 344566777788899999998888777643 53 4567788999999999999999999999885432 22
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205 133 -VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----- 199 (301)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 199 (301)
.+..+++..|.+.|+-+.--+.++..-..+.+. ..+++..|...+.++++.+|.....+.++.....
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHH
Confidence 255678999999887665555554432222111 3466777888889999999999999999875211
Q ss_pred -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.-.+..+|.+....|+ ..++....+-++.+...
T Consensus 484 ~a~~LvLLs~v~lslgn---~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGN---TVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHhcc---hHHHHhccchHHHHHhc
Confidence 2256678999999999 99999888888876443
No 252
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.011 Score=47.01 Aligned_cols=186 Identities=10% Similarity=-0.012 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhc-----CCCHHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETF-----MADHDA 168 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~ 168 (301)
.+..-+.++...++|++|...+.++.+-..++. .++-..+.+......+.++..+++++.... |+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 344456677778999999999999986433332 256667788888899999999999998874 333333
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-----Cc
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KN 237 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~ 237 (301)
-...+-=.....+.++|+..|++++.+-..+ .+.+...+.++.+... +.+|-..+.+-...... .-
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k---f~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK---FTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH---hhHHHHHHHHhhhHHHHHhhcccH
Confidence 3444444567788999999999998764333 2345566778888888 99998888775433211 24
Q ss_pred hhHhhhHHHHHHHHHhhhccCCcccc------cchHHHHHHHHHHHHHHHhhCChhh
Q 022205 238 TKALFGICLCSSAIAQLTKGRNKEDK------ESPELQSLAAAALEKDYKQRAPAKL 288 (301)
Q Consensus 238 ~~~~~~l~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (301)
.+.+.+..+++....+...+..-..+ ....-...+.++|.+.|.+..++.+
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 45566766766665554332221111 1222233456678888887766543
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0058 Score=50.07 Aligned_cols=132 Identities=17% Similarity=0.042 Sum_probs=99.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HH--H
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LA--E 174 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg--~ 174 (301)
...-+..+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+...=...... .+.. .+ .
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHHHH
Confidence 33445566777888999999999999999999999999999999999999999988887632211111 1111 11 2
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+.+.....+. ..++..+..+|++..+-+.+|..+...|+ .+.|.+++-..++.+-+
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 22222222221 33566678899999999999999999999 99999999999988765
No 254
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.66 E-value=0.00022 Score=63.07 Aligned_cols=102 Identities=16% Similarity=0.102 Sum_probs=74.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
|.+....|+...|+.++..++...|.... ...+++++..+.|-...|-.++.+++.++...|-.++.+|.++....+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 34444567777788888777777775443 45667777777777777777777777777777777777788888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHH
Q 022205 184 QAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~l 206 (301)
.|++.|+.|++.+|+++.....+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHH
Confidence 88888888888777777654444
No 255
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.63 E-value=0.016 Score=48.75 Aligned_cols=162 Identities=13% Similarity=-0.020 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhC----CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC-HHHHH
Q 022205 66 LYEQVSIAAMDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHK 136 (301)
Q Consensus 66 ~~~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~ 136 (301)
....++..+... .+...|..++..+.. ...+.+.+.+|.++.. ..+..+|..+|+++....... ..+..
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 344444444432 457778888874443 5667777788888876 348888888888888876444 34467
Q ss_pred HHHHHHHHcC-------ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205 137 RRVAIAKAQG-------NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLA 205 (301)
Q Consensus 137 ~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~ 205 (301)
.+|.++..-. +...|...|.++-... ++.+.+.+|.+|.. ..++.+|+..|.++-+... ...++.
T Consensus 153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~ 228 (292)
T COG0790 153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN 228 (292)
T ss_pred HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence 7777776642 2236788888777665 67888888877755 2478888888888887765 777788
Q ss_pred HHHHHHHcCCC------------CcHHHHHHHHHHHhcccC
Q 022205 206 YADVLYTLGGV------------DNILLAKKYYASTIDLTG 234 (301)
Q Consensus 206 la~~~~~~~~~------------~~~~~A~~~~~~al~~~p 234 (301)
++ +++..|.. .+...|...+..+....+
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 88 66666520 126677777777666654
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.032 Score=47.56 Aligned_cols=126 Identities=12% Similarity=-0.041 Sum_probs=69.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHH----HHHHHHHHHHH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLDPV----LHKRRVAIAKA 144 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~----~~~~l~~~~~~ 144 (301)
......|+.+.|+.+.+.+....|.-+.++...-......|+|+.|++..+..... .++... ++..---....
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 33445677777777777777777777766666656666677777777776554431 121111 01000001111
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
..+...|...-.++.++.|+...+-..-+..++..|+..++-.+++.+.+..|
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 23344555555555555555555555555555555555555555555555555
No 257
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.56 E-value=0.00072 Score=58.68 Aligned_cols=130 Identities=11% Similarity=0.103 Sum_probs=106.7
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
.+..|+.-.|-.-+..++...|.+|....+.+.+....|.|+.|...+..+-..-.....+...+.......|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 46679999999999999999999999999999999999999999988876655444444455666677788999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
...-.+...-.+++....-+..-...|-+++|..++++.+.++|.....|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 99988887777888776666666778899999999999999988654433
No 258
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.50 E-value=0.042 Score=46.19 Aligned_cols=162 Identities=13% Similarity=-0.011 Sum_probs=121.4
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cC
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QG 146 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g 146 (301)
...+++..+...+..+.. -.++.....++.++... .+..+|..+|+.+ ....++.+.+.+|.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 455778888888877776 23346677777777664 4688899999954 445577788899999987 45
Q ss_pred ChhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCC
Q 022205 147 NFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVD 217 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~ 217 (301)
+..+|..+|+++.+..-.. ..+.+.+|.+|..-. +...|+..|.++-... ++.+...+|.+|..- |-..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 8999999999999875333 234788888887642 2347999999988765 788899999887654 4344
Q ss_pred cHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 218 NILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 218 ~~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
++++|..+|.++.+... ..+++.++
T Consensus 206 d~~~A~~wy~~Aa~~g~---~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD---GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHH
Confidence 69999999999998853 66677776
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.021 Score=45.97 Aligned_cols=175 Identities=14% Similarity=0.070 Sum_probs=140.9
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh-HH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TA 151 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~-~A 151 (301)
......-+.|+.+...++..+|.+-.+|..+-.++..+ .+..+-++++...+..+|.+-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 44556678899999999999999888888777777665 46788899999999999999999999999999999888 88
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCC--CCcHHHHHHHHHH
Q 022205 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGG--VDNILLAKKYYAS 228 (301)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~--~~~~~~A~~~~~~ 228 (301)
+.+.+.++..+..+-.+|...-.+...-+.|+.-+.+....++.+-.+-.+|...-.+... .|- ....+.-+.+..+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999887777766554222111 121 0125666788888
Q ss_pred HhcccCCCchhHhhhHHHHHH
Q 022205 229 TIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 229 al~~~p~~~~~~~~~l~~~~~ 249 (301)
.+.+.|+ |..+|-.|.-.+.
T Consensus 213 ~I~~vP~-NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 213 KILLVPN-NESAWNYLKGLLE 232 (318)
T ss_pred HHHhCCC-CccHHHHHHHHHH
Confidence 9999996 8888876664444
No 260
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.48 E-value=0.0025 Score=55.68 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHH
Q 022205 82 VAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLE 160 (301)
Q Consensus 82 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~ 160 (301)
.-..+++.+...++.++..|........+.+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678888899999999998888888887889999999999999999999999988888777766 8889999999999
Q ss_pred hcCCCHHHHHHH
Q 022205 161 TFMADHDAWREL 172 (301)
Q Consensus 161 ~~p~~~~~~~~l 172 (301)
.+|++|..|...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999887643
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.47 E-value=0.0044 Score=46.28 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+..+....+..++.+.+..++..+.-..|..+.+...-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44556666677777788888888888888888888888888888888888888888888888888888887777777777
Q ss_pred HHcCCh
Q 022205 143 KAQGNF 148 (301)
Q Consensus 143 ~~~g~~ 148 (301)
...|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 777764
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0021 Score=56.15 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL 194 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~ 194 (301)
.-...|+.++...+.++..|........+.+.+.+-..+|.+++..+|++|+.|..-|.-.+..+. ++.|...|.+++.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678889999999999999998888888889999999999999999999999999988888765 9999999999999
Q ss_pred hCCCCHHHHHHH
Q 022205 195 SQPTVPLYHLAY 206 (301)
Q Consensus 195 ~~p~~~~~~~~l 206 (301)
.+|+++..|..+
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396|consen 169 FNPDSPKLWKEY 180 (568)
T ss_pred cCCCChHHHHHH
Confidence 999999877654
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.45 E-value=0.012 Score=44.02 Aligned_cols=81 Identities=17% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
+..+..+-...++.+++...+....-+.|+.+..-..-|.++...|+|.+|+..++.+....|..+.+.-.++.|++.+|
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33444444555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred C
Q 022205 215 G 215 (301)
Q Consensus 215 ~ 215 (301)
+
T Consensus 93 D 93 (160)
T PF09613_consen 93 D 93 (160)
T ss_pred C
Confidence 6
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.42 E-value=0.00043 Score=37.31 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (301)
+|+.+|.++...|++++|+..|+++++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455556666666666666666666666555
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.41 E-value=0.0027 Score=42.96 Aligned_cols=65 Identities=23% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCC
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG 215 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~ 215 (301)
.+..+++.+..+|+++.+.+.+|..+...|++++|+..+-.++..+++. ..+...+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556677777777777777777777777777777777777777776654 4555556666666665
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.38 E-value=0.00035 Score=38.35 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
|.+||.+|...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.33 E-value=0.00062 Score=36.31 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455555555555555555555544443
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.33 E-value=0.051 Score=47.06 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=92.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------------C------------CCH---HHHHHHHH
Q 022205 124 LLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------------M------------ADH---DAWRELAE 174 (301)
Q Consensus 124 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------------p------------~~~---~~~~~lg~ 174 (301)
.+..+|.+.+++..++.++..+|+...|..++++++-.. + .|- .+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 356899999999999999999999999999988876321 1 111 23445567
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC----chhHhhhHHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPT-VPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK----NTKALFGICLCS 248 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~l~~~~ 248 (301)
.+.+.|.+.-|.++++-.+.++|. ||.. ...+-....+.++ ++--+..++......... -...-|+.++++
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~---y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ---YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC---HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 778899999999999999999998 7654 3444444456666 777777777655421110 124667888888
Q ss_pred HHHHhh
Q 022205 249 SAIAQL 254 (301)
Q Consensus 249 ~~l~~~ 254 (301)
..+++.
T Consensus 189 ~~l~~~ 194 (360)
T PF04910_consen 189 FRLEKE 194 (360)
T ss_pred HHhcCc
Confidence 888874
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.33 E-value=0.029 Score=51.65 Aligned_cols=147 Identities=18% Similarity=0.033 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcC-
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLE-------DNPLDPVLHKRRVAIAKAQG- 146 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g- 146 (301)
...|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.. .. .+.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCC
Confidence 45677778777763 4566666777777654 588999999998877 33 4557788999998854
Q ss_pred ----ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCCCc
Q 022205 147 ----NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN 218 (301)
Q Consensus 147 ----~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~ 218 (301)
+...|..++.++-... ++.+.+.+|.++.... ++..|.++|..|... .+..+.+++|.+|..- |-.-+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 5677999999888765 5777888899988755 678999999998764 5678888888887644 22345
Q ss_pred HHHHHHHHHHHhcccC
Q 022205 219 ILLAKKYYASTIDLTG 234 (301)
Q Consensus 219 ~~~A~~~~~~al~~~p 234 (301)
...|..+|.++.+..+
T Consensus 380 ~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHHHccC
Confidence 8999999999998863
No 270
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.32 E-value=0.0045 Score=43.00 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
+++.|.++..+.|..+..++.+|.-+-....|++++.-.+++|.+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 456677777777777666666666666566666666666666654
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.31 E-value=0.099 Score=45.58 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC---CchhHhhhHHHHHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLCSS 249 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~l~~~~~ 249 (301)
|..++..|+|.++..+-.-..++.| .+.++..+|.+++...+ |++|-.++.. +-|+ .+....-.+++|+-
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQK---LPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence 4456788999999999999999999 89999999999999999 9999999874 3333 45566678888887
Q ss_pred HHHh
Q 022205 250 AIAQ 253 (301)
Q Consensus 250 ~l~~ 253 (301)
.+.+
T Consensus 542 h~~k 545 (549)
T PF07079_consen 542 HLPK 545 (549)
T ss_pred hhhh
Confidence 7654
No 272
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.044 Score=46.74 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHH
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLN 156 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 156 (301)
.+.-+.++++|++.+|++...+..+-.+.....+.++....+++++..+|++...|..+-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 35677889999999999999988888888888899999999999999999999988766554433 234667777887
Q ss_pred HHHHhcCCC------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 157 KYLETFMAD------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 157 ~~l~~~p~~------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+++..-... ...+..+.......|..+.|+..++..++.+=
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 777542110 23455677777889999999999999998863
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.26 E-value=0.0006 Score=36.37 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (301)
+++.+|.++...|++++|+..|+++++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666665
No 274
>PRK10941 hypothetical protein; Provisional
Probab=97.17 E-value=0.0074 Score=49.75 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
..++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 345556677777777777777777777777777777777777777777777777777777777777665444433
No 275
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.17 E-value=0.17 Score=45.61 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 144 (301)
.|...+.-....|+.+-|...+..+.+.+ |+.+.+...-+......|++..|...+++..+..|+...+-.....+..+
T Consensus 333 fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 333 FWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR 412 (577)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH
Confidence 34444444444588888888887777766 67777777888888888888888888888888778888877777888888
Q ss_pred cCChhHHHH---HHHHHHHhcCCC----HHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 145 QGNFPTAIE---WLNKYLETFMAD----HDAWRELAEIY-VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 145 ~g~~~~A~~---~~~~~l~~~p~~----~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
.|+.+.+.. ++..... ...+ ...+...+... .-.++.+.|...+.+++...|++...+..+-.+....+
T Consensus 413 ~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 413 KGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888887774 2222211 1111 22334444443 33577888888888888888888877777776666555
No 276
>PRK10941 hypothetical protein; Provisional
Probab=97.16 E-value=0.0069 Score=49.91 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
...++-.+|...++++.|+.+.+..+.+.|+++.-+.-.|.+|..+|. +..|...++..++..|+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence 456788899999999999999999999999999999999999999999 99999999999999996
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.10 E-value=0.01 Score=41.24 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=66.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 184 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~ 184 (301)
+.-++..|++-+|++..+..+..++++..+| .++..+|.. +++.+-.....+....+. -.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~----~lh~~QG~i-----f~~lA~~ten~d~k~~yL-----------l~ 62 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSW----LLHRLQGTI-----FYKLAKKTENPDVKFRYL-----------LG 62 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchH----HHHHHHhHH-----HHHHHHhccCchHHHHHH-----------HH
Confidence 4556777777888888877777777666433 122223321 223333332222333333 35
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
++.+|.++..+.|..+..++.+|.-+-.... |++++...++++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~---Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKY---YKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhcc
Confidence 8899999999999998888888776555555 78888888877765
No 278
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.088 Score=45.28 Aligned_cols=164 Identities=12% Similarity=0.133 Sum_probs=118.8
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHH------------HHhCCChHHHHHHHHHHHHhCCCchhhHHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIA------------AMDCQCLDVAKDCIKVLQKQFPESKRVGRL 103 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 103 (301)
.....+.+.+...++.. +|+...+|...-.+ .....-+++-+.+...+++.+|++-.+|..
T Consensus 42 ~~yd~e~l~lt~~ll~~-------npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 42 KEYDEEHLELTSELLEK-------NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred cccchHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 44557788888888877 77655554422111 111224566778889999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 104 EGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 104 ~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
+..++.+.+ ++..=+..++++++.+|.+..+|...-.+..... ...+-+.+..+++..++.+-.+|.....+..
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 999998775 4678899999999999999888776555544432 2567788899999999999999988776665
Q ss_pred H------ccc------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 178 S------LQM------YKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 178 ~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
. .|+ ...-+..-..|+-.+|++..+|+..
T Consensus 195 ~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 195 TLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 2 231 3345566677788899998877663
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.08 E-value=0.017 Score=42.49 Aligned_cols=86 Identities=21% Similarity=0.199 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+.......+..++++++..++..+.-..|+.+.+...-|.++...|+|.+|+..++...+..+..+...-.++.|+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 34445555666667888899988888888888999888888899999999999999999998887777777777777777
Q ss_pred HHcCCh
Q 022205 143 KAQGNF 148 (301)
Q Consensus 143 ~~~g~~ 148 (301)
..+|+.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 777764
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.03 E-value=0.13 Score=47.38 Aligned_cols=159 Identities=15% Similarity=0.018 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhC-----CChHHHHHHHHHHHHh-----CCCchhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhcC
Q 022205 64 WTLYEQVSIAAMDC-----QCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAKG-----LWAEAEKAYSSLLEDN 128 (301)
Q Consensus 64 ~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~ 128 (301)
......++.++..- .|.+.|+.++..+... .-..+.+.+.+|.+|.... +...|+.+|.++-...
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 34444556655543 5889999999988771 1125567788999998853 7788999999997766
Q ss_pred CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHH
Q 022205 129 PLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~ 201 (301)
++.+.+.+|.++..-. ++..|..+|..+... .+..+.+.+|.+|..- .+...|..+|.++...+ ++.
T Consensus 324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~ 397 (552)
T KOG1550|consen 324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS 397 (552)
T ss_pred --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence 4556688898888766 567999999998875 4788899999998753 47889999999999887 556
Q ss_pred HHHHHHHHHHHc-CCCCcHHHHHHHHHHHhc
Q 022205 202 YHLAYADVLYTL-GGVDNILLAKKYYASTID 231 (301)
Q Consensus 202 ~~~~la~~~~~~-~~~~~~~~A~~~~~~al~ 231 (301)
+.+.++..+... +. +..+.-.+.....
T Consensus 398 A~~~~~~~~~~g~~~---~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 398 AAYLLGAFYEYGVGR---YDTALALYLYLAE 425 (552)
T ss_pred hHHHHHHHHHHcccc---ccHHHHHHHHHHH
Confidence 566666555433 44 5555444444333
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.02 E-value=0.24 Score=44.71 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=139.9
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLDPVLH 135 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 135 (301)
.++++.....|..........|+++...-.+++.+--.......|...+......|+.+-|-..+..+.+. .|+.+.+.
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 44555566667776777788899999999999998866678889999999999999999999888888874 47777777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHH
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADV 209 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~---~~~~al~~~p~~---~~~~~~la~~ 209 (301)
..-+...-..|+++.|...+++..+..|+...+-..........|+.+.+.. .+.....-..+. ...+...+..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 7778888889999999999999999889888888888888888999988874 222222111111 2334444544
Q ss_pred HH-HcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205 210 LY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (301)
Q Consensus 210 ~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 243 (301)
.+ -.++ .+.|...+.+++...|. +...+..
T Consensus 450 ~~~i~~d---~~~a~~~l~~~~~~~~~-~k~~~~~ 480 (577)
T KOG1258|consen 450 RYKIRED---ADLARIILLEANDILPD-CKVLYLE 480 (577)
T ss_pred HHHHhcC---HHHHHHHHHHhhhcCCc-cHHHHHH
Confidence 33 4456 99999999999999996 5554443
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.02 E-value=0.0018 Score=35.48 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYL 159 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l 159 (301)
+..+|.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666644
No 283
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.01 E-value=0.0069 Score=54.03 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
.....+++.+|.++..+..-+..+...|+..+|..++..++-..|... -....+|.++.+.|...+|--++..|+.-.
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 344555666776666655555555666777777777777776665442 356667777777777777776776666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~ 253 (301)
|.....++.+|.++..+++ +...+.+|..+.+.+|. .....--....|+.++-+
T Consensus 280 ~~~t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~ 335 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQ 335 (886)
T ss_pred ccccccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHH
Confidence 6555557777777777777 77777777777777775 112222334445555443
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.97 E-value=0.0016 Score=33.95 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
++..+|.++...|+++.|+.+|++++++.|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.91 E-value=0.0065 Score=52.98 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=106.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 189 (301)
..|+.-.|-.....++...|.++......+.+....|.|+.+...+..+-..-.....+...+-...+..|+++.|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 45889999999999999999999988889999999999999999887766554444555556667778899999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (301)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (301)
.-.+.-.-.++++...-+.....+|- +++|..++.+.+.++|. .-.+|.
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~-~~~g~v 429 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE-TQSGWV 429 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh-hcccce
Confidence 88887777788887777777788888 99999999999999996 444443
No 286
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.89 E-value=0.005 Score=50.62 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
....|+.++|..+|+.++.+.|.+++++..+|......++.-+|-.||-+|+.++|.+..++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34455666666666666666666666666666665555556666666666666666665554443
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.88 E-value=0.0075 Score=36.14 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.+.+|..+++.|+|+.|..+.+.+++++|++..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3444444555555555555555555555554443
No 288
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.88 E-value=0.025 Score=38.28 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 022205 84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGN 147 (301)
Q Consensus 84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 147 (301)
+.-++..+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344566666777777777777777777777777777777777766554 3333344444444433
No 289
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.87 E-value=0.0026 Score=52.27 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=63.7
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
+.++...+|.++..|...+......|.+.+--..|..++..+|.+.+.|.. ...-+...++++.+...|.++++.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555677788888877777777777888888888888888888887765 3445566778888888888888888888
Q ss_pred HHHHHH
Q 022205 166 HDAWRE 171 (301)
Q Consensus 166 ~~~~~~ 171 (301)
|..|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 777754
No 290
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.86 E-value=0.006 Score=50.17 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=60.8
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
+.-....|+.++|...|+.|+.+.|+++.++..+|.....-++ .-+|-.+|-+|+.++|. +..++.+-.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~-nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPG-NSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCC-chHHHhhhh
Confidence 3334567999999999999999999999999999999988888 99999999999999996 877776543
No 291
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.84 E-value=0.22 Score=47.05 Aligned_cols=117 Identities=16% Similarity=0.065 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-- 132 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 132 (301)
+......++.....+++++|..++.++...-|. .....-+.|.+....|++++|+...+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 334444577788889999999999888775543 123455678888899999999999999999777653
Q ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHH--HHHHHHHHHcc
Q 022205 133 ---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAW--RELAEIYVSLQ 180 (301)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~--~~lg~~~~~~~ 180 (301)
.+...+|.+..-.|++++|..+..++.+.... ....| ...+.++..+|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 36778888999999999999999888776322 22223 34466666777
No 292
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.11 Score=46.70 Aligned_cols=101 Identities=18% Similarity=-0.013 Sum_probs=46.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HHHhcCCCHHHHHHH------HHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YLETFMADHDAWREL------AEIYV 177 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~~~l------g~~~~ 177 (301)
...+...+....+......++..+|.+..++.+++......|..-.+...+.. +....|++..+...+ |....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555544444443333333322 444444444333322 44444
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLA 205 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~ 205 (301)
..|+..++....+++..+.|.++.+...
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 4444455555555555555554443333
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.72 E-value=0.035 Score=40.89 Aligned_cols=76 Identities=17% Similarity=-0.016 Sum_probs=51.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
..-...++.+++...+....-+.|+.+..-..-|.++...|+|.+|+..++....-.+..+...-.++.|++.+|+
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3334466666777777666666777777766677777777777777777777766666666666667777777776
No 294
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.60 E-value=0.0039 Score=51.32 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 120 AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 120 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.|.++....|+++..|...+..-...|.+.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455566788899999998888888899999999999999999999999976 444567789999999999999999999
Q ss_pred CHHHHHHH
Q 022205 199 VPLYHLAY 206 (301)
Q Consensus 199 ~~~~~~~l 206 (301)
+|..|..+
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 99877654
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.57 E-value=0.017 Score=34.64 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI 106 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~ 106 (301)
++.+|..+++.|+|+.|..+++.+++..|++..+..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4455666666666666666666666666666665554433
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.56 E-value=0.37 Score=40.27 Aligned_cols=175 Identities=12% Similarity=-0.000 Sum_probs=112.9
Q ss_pred HHhCCChHHHHHHHHHHHHhC-CCc-------hhhHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CC---CC------
Q 022205 74 AMDCQCLDVAKDCIKVLQKQF-PES-------KRVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD------ 131 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~~------ 131 (301)
....|+++.|..++.++-... ..+ ...++..|......+ +++.|..+++++++. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356799999999999887755 222 345677788888888 999999999999875 21 11
Q ss_pred -HHHHHHHHHHHHHcCChh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHH
Q 022205 132 -PVLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPLYHLAY 206 (301)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 206 (301)
..++..++.++...+.++ +|..+++.+-...|+.+..+..--.+....++.+.+.+.+.+++..-+ .....-..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 226677888888877654 566666667677788787775555555558889999999999887544 222222222
Q ss_pred HHHHH-HcCCCCcHHHHHHHHHHHhcc--cCCCchhHhhhHHHHHHHHHh
Q 022205 207 ADVLY-TLGGVDNILLAKKYYASTIDL--TGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 207 a~~~~-~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~l~~~~~~l~~ 253 (301)
..+.. .... ...|...+...+.. .|. .-. |....++..-+..
T Consensus 163 ~~i~~l~~~~---~~~a~~~ld~~l~~r~~~~-~~~-~~e~~vl~~~~~~ 207 (278)
T PF08631_consen 163 HHIKQLAEKS---PELAAFCLDYLLLNRFKSS-EDQ-WLEKLVLTRVLLT 207 (278)
T ss_pred HHHHHHHhhC---cHHHHHHHHHHHHHHhCCC-hhH-HHHHHHHHHHHHH
Confidence 22211 1123 56677777666643 342 222 6666666555543
No 297
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.49 E-value=0.058 Score=52.77 Aligned_cols=164 Identities=15% Similarity=0.030 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhCCChHHHHH------HHHHHH-HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCC
Q 022205 66 LYEQVSIAAMDCQCLDVAKD------CIKVLQ-KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE--------DNPL 130 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~------~~~~~~-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~ 130 (301)
-..+-+...+..|.+.+|.. ++.... .+.|+....+..++.++.+.|++++|+..-.++.- ..|+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34445777777888887777 555333 35678889999999999999999999999887754 2355
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-----
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP----- 197 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----- 197 (301)
....+.+++...+..++...|...+.++... .|.-.....+++.++...++++.|+++.+.|+..+.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 6678888999999999999999999988765 344455667899999999999999999999997542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 198 ---TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 198 ---~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.....+..++..+...++ +..|+.+......+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~d---fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKD---FRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHH---HHHHHHHHhhHHHH
Confidence 223456667777777777 77777766665544
No 298
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.57 Score=45.25 Aligned_cols=171 Identities=9% Similarity=-0.038 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-------------- 128 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------- 128 (301)
.+.+|.++|.+.++.|...+|++.|-+ .++|..+...-.+..+.|.|++-+.++.-+-+..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 466788889899999999998888744 3566667777777888888888888776654321
Q ss_pred --------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 129 --------------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 129 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
|+.+. ....|.-++..|.|+.|.-+|. +...|..|+..+...|+|+.|+...++|-.
T Consensus 1178 kt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 22221 1234444444455554444443 345577888899999999999888877632
Q ss_pred hC-----------CC--------------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 195 SQ-----------PT--------------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 195 ~~-----------p~--------------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
.. .. +..-+-.+...|...|- |++-+..++.++-+.-. +...+..|+..|+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy---FeElIsl~Ea~LGLERA-HMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY---FEELISLLEAGLGLERA-HMGMFTELAILYS 1324 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc---HHHHHHHHHhhhchhHH-HHHHHHHHHHHHH
Confidence 11 00 01123345555667777 88888888888777653 6666666777776
Q ss_pred HH
Q 022205 250 AI 251 (301)
Q Consensus 250 ~l 251 (301)
+.
T Consensus 1325 ky 1326 (1666)
T KOG0985|consen 1325 KY 1326 (1666)
T ss_pred hc
Confidence 54
No 299
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.66 Score=41.86 Aligned_cols=157 Identities=16% Similarity=0.054 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHhC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Q 022205 78 QCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------------------- 126 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------------------- 126 (301)
..|++|...|.-+.... |.+...+..++.+...+|+.+-|-...++++=
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 45677777776666533 45567788899999999999988888877762
Q ss_pred --cCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-HcccHHHHHHHHHHH-----Hh
Q 022205 127 --DNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYV-SLQMYKQAAFCYEEL-----IL 194 (301)
Q Consensus 127 --~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~-~~~~~~~A~~~~~~a-----l~ 194 (301)
..|.|-. +.+.....+.+.|-+..|.++++-.+.++|. +|.+...+-++|. +..+|.=-+..++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 1233333 3334445566789999999999999999998 8877666666654 456777667666655 23
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.-|+.+. -..+|..|.........+.|...+.+|+...|.
T Consensus 412 ~~PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3454433 344555555555533578899999999999884
No 300
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.40 E-value=0.0081 Score=47.36 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
....++.+.+.+.|.+++++-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666677777777777666677777777777777777777777777776655
No 301
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.40 E-value=0.0061 Score=48.00 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=53.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 022205 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (301)
Q Consensus 107 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (301)
.....++.+.|.+.|.+++...|.....|+++|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445678899999999999999999999999999999999999999999999999999773
No 302
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.35 E-value=0.0067 Score=31.35 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (301)
++..+|.++...|++++|+..++++++.+|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555555444
No 303
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.69 Score=40.93 Aligned_cols=204 Identities=13% Similarity=0.067 Sum_probs=129.6
Q ss_pred hCCChHHHHHHHHHHHHhCC------Cchhh--------HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-------C
Q 022205 76 DCQCLDVAKDCIKVLQKQFP------ESKRV--------GRLEGILLEAKGLWAEAEKAYSSLLE---DNPL-------D 131 (301)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p------~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~-------~ 131 (301)
..|-+++|.++-++++.... ....+ +-.+..|-.-.|++.+|+.....+.. ..|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 45778888888888876432 12222 22345566667999999988877765 3444 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-C--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---------
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-D--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--------- 199 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------- 199 (301)
+.+..-+|......|.++.|...|..+.+.-.. + .-...++|..|...|+-+.-.+.. -.+.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~l---d~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKAL---DLIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHH---HhcCCCCCCcchHHHH
Confidence 345666777777788899999999999876432 2 234467899999987755443333 3445553
Q ss_pred -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh-----hhHHHHHHHHHhhhccCCccccc--------c
Q 022205 200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL-----FGICLCSSAIAQLTKGRNKEDKE--------S 265 (301)
Q Consensus 200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~~l~~~~~~l~~~~~~~~~~~~~--------~ 265 (301)
..+++..|-..+..++ +.+|...+.+.++.....+..-+ .-|+.+...+|+...+.+-.... -
T Consensus 444 ~a~~~~v~glfaf~qn~---lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQND---LNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 2367778888899999 99999999999998532111111 12233333444433333222111 2
Q ss_pred hHHHHHHHHHHHHHHHhhCC
Q 022205 266 PELQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~ 285 (301)
....-|+...+.++|+..+.
T Consensus 521 i~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 521 IPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred chHHHHHHHHHHHHHHHhCc
Confidence 33455777788888887766
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.19 E-value=0.27 Score=34.78 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-------hhCCCCHH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELI-------LSQPTVPL----YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al-------~~~p~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
++-.|+.++..+|+|++++....++| +++.+... +.+..|..+..+|+ .++|+..|+.+.++
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEM 129 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence 34445555555666655555555444 33344433 23455677777777 77777777777654
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.09 E-value=0.13 Score=36.30 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHH-------HhcCCCHH----
Q 022205 111 KGLWAEAEKAYSSLLEDNPL------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYL-------ETFMADHD---- 167 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~---- 167 (301)
.|-|++|...++++.....+ +..++..|+..+..+|+|++++..-..++ +++.+...
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 35566666666666553211 12245556666677777766655544444 34444444
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+.+..|..+...|+.++|+..|+.+-+
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345678888889999999999988764
No 306
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.32 Score=43.85 Aligned_cols=113 Identities=15% Similarity=-0.054 Sum_probs=83.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCHHHHHHH------HHHH
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS-SLLEDNPLDPVLHKRR------VAIA 142 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~-~al~~~p~~~~~~~~l------~~~~ 142 (301)
+.......++...+.-.+...+..+|.+..+...++......|....+...+. .+....|++..+...+ +...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 45666667788788888888888888888888888887777766666555544 4777888888766666 7777
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~ 182 (301)
...|+..++...+.++....|.++.....+.....+...|
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 7788888888888999998888877666555554444433
No 307
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.03 E-value=1.3 Score=41.45 Aligned_cols=80 Identities=19% Similarity=0.054 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCC----CchhhHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--CCCHH----HHHHHHHHHHHcCChhH
Q 022205 82 VAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDN--PLDPV----LHKRRVAIAKAQGNFPT 150 (301)
Q Consensus 82 ~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~--p~~~~----~~~~l~~~~~~~g~~~~ 150 (301)
.|+.+++.+.+..+ ....+++.+|.++. ...+++.|..++++++... ++..+ +...++.++...+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555555553222 22334455555544 4555666666666555433 22221 2223344444444444
Q ss_pred HHHHHHHHHHhc
Q 022205 151 AIEWLNKYLETF 162 (301)
Q Consensus 151 A~~~~~~~l~~~ 162 (301)
|...+++.++..
T Consensus 118 a~~~l~~~I~~~ 129 (608)
T PF10345_consen 118 ALKNLDKAIEDS 129 (608)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 308
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.03 E-value=0.1 Score=41.64 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCChhHH-------HHHHHHHHHhcCC--C----HHHHHH
Q 022205 112 GLWAEAEKAYSSLLED----NP---LDPVLHKRRVAIAKAQGNFPTA-------IEWLNKYLETFMA--D----HDAWRE 171 (301)
Q Consensus 112 ~~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A-------~~~~~~~l~~~p~--~----~~~~~~ 171 (301)
..+++|+..|.-++-. .. .-+..+..++.+|...|+.+.. ...|.++++.... . ....+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4566666666655531 11 1134666777777777774433 3333333332211 1 234455
Q ss_pred HHHHHHHcccHHHHHHHHHHHHh
Q 022205 172 LAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+|.+..+.|++++|+..|.+++.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHc
Confidence 56666666666666666666554
No 309
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=0.034 Score=49.27 Aligned_cols=89 Identities=15% Similarity=0.005 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
.+....++..+.+++...|.....+...+.++... |+.-.|+.....+++.+|....+++.|+.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34455566666666666666665555555555543 444555666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCC
Q 022205 154 WLNKYLETFMAD 165 (301)
Q Consensus 154 ~~~~~l~~~p~~ 165 (301)
+...+...+|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 666666555543
No 310
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.94 E-value=0.16 Score=39.20 Aligned_cols=97 Identities=5% Similarity=-0.071 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHH----HH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----YH 203 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~~ 203 (301)
.++..+|..|...|+.+.|++.|.++....... .+.++.+..+.+..++|.....+..++-..- +.++. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356677777777777777777777766654332 3456666677777777777777777665432 22222 22
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 204 LAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
..-|..+...++ |..|...|..+..-
T Consensus 117 ~~~gL~~l~~r~---f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRD---FKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhch---HHHHHHHHHccCcC
Confidence 334555666777 88888888766543
No 311
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.029 Score=49.61 Aligned_cols=90 Identities=23% Similarity=0.141 Sum_probs=77.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
.+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....+++++|....+|+.|+.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 35677899999999999999999999988888875 566678888888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCH
Q 022205 188 CYEELILSQPTVP 200 (301)
Q Consensus 188 ~~~~al~~~p~~~ 200 (301)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9888877777553
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.92 E-value=0.18 Score=38.92 Aligned_cols=95 Identities=15% Similarity=0.011 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCHH----HHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADHD----AWR 170 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~----~~~ 170 (301)
++..+|..|.+.|++++|++.|.++....... .+.+..+..+....|++.....++.++-..-. .++. .-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44455555555555555555555554433221 22444555555555666665555555443321 1121 223
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
.-|..++..++|..|...|-.+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 446666777888888877766653
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.84 E-value=0.1 Score=37.68 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCC---ChHHHHHHHHHHHH-hCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205 66 LYEQVSIAAMDCQ---CLDVAKDCIKVLQK-QFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH 135 (301)
Q Consensus 66 ~~~~la~~~~~~~---~~~~A~~~~~~~~~-~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 135 (301)
..+++|+++.... +..+.+.+++.+++ ..| ......+.++.-+.+.++|+.++.+.+..++..|++..+.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4556677777664 45677888888886 445 3445667788888888888888888888888888887764
No 314
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.75 E-value=2.2 Score=41.75 Aligned_cols=175 Identities=17% Similarity=0.128 Sum_probs=113.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
.+++..+.|+.|+..|+++...+|+.. .+.+..|.....+ | .+++|+..|++... .|.-|--|...+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence 345666889999999999999999554 4566667665543 2 57888888887543 56667778888999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHhhCCCCHHHH---HHHH------
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYH---LAYA------ 207 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~---~~la------ 207 (301)
|.++|++++-++.+.-+++..|++|..-...-.+.+++. +-..|....--++...|.....- ..+-
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQ 641 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc
Confidence 999999999999999999999999764333222222221 22344455555555555432210 0000
Q ss_pred ----------------------HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 208 ----------------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 208 ----------------------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.+.+..|. ..--...++++..+.| .++......|...+|+
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 703 (932)
T PRK13184 642 QATLFCQLDKTPLQFRSSKMELFLSFWSGF---TPFLPELFQRAWDLRD---YRALADIFYVACDLGN 703 (932)
T ss_pred cCCceeeccCchhhhhhhhHHHHHHHHhcC---chhhHHHHHHHhhccc---HHHHHHHHHHHHHhcc
Confidence 11223333 4444556777777654 3777777777777776
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.73 E-value=0.03 Score=31.34 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34566666666666666666666666644
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.64 Score=35.38 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=50.6
Q ss_pred HhCCChHHHHHHHHHHHHhCCC-ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--H--HHHHHHHHHHHHcCCh
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPE-SK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--P--VLHKRRVAIAKAQGNF 148 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~--~~~~~l~~~~~~~g~~ 148 (301)
...+..++|+.-|..+.+..-. .| -+.+..|.+....|+...|+..|..+-...|-- . .+...-+.++...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555555555555443321 11 223334445555555555555555544432211 0 1223334444445555
Q ss_pred hHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 149 PTAIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 149 ~~A~~~~~~~l-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
++-....+..- ..+|--..+.-.||..-++.|++.+|.+.|....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 44444333221 1122223334444555555555555555554443
No 317
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=2 Score=41.79 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=94.2
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----------
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------- 165 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---------- 165 (301)
+.+.+|..+|....+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++..+.+.-...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 56778999999999999999999888765 456667778888888999999988888776542111
Q ss_pred -----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 166 -----------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 166 -----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
..-.-..|+-++..|.|+.|.-+|.. ..-|..++..+..+|+ |+.|+..-++
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge---yQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE---YQGAVDAARK 1245 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH---HHHHHHHhhh
Confidence 11122456777777788877766643 3346778888999999 9999888776
Q ss_pred HhcccCCCchhHhhhHHHHHH
Q 022205 229 TIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 229 al~~~p~~~~~~~~~l~~~~~ 249 (301)
|- +.+.|-..+.++.
T Consensus 1246 An------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1246 AN------STKTWKEVCFACV 1260 (1666)
T ss_pred cc------chhHHHHHHHHHh
Confidence 53 4455555555443
No 318
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.69 E-value=1.1 Score=39.48 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=57.5
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A 222 (301)
+..-.+.|..+|-++.+.--..+.++..-|.+ +...|++.-|..+|+-.+...|+++.....+-..+...|+ -..|
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~na 485 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENA 485 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHH
Confidence 33445556666666555432333333333333 4457888888888888888888888777777777778888 8888
Q ss_pred HHHHHHHhccc
Q 022205 223 KKYYASTIDLT 233 (301)
Q Consensus 223 ~~~~~~al~~~ 233 (301)
...|++++..-
T Consensus 486 raLFetsv~r~ 496 (660)
T COG5107 486 RALFETSVERL 496 (660)
T ss_pred HHHHHHhHHHH
Confidence 88888777553
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.56 E-value=0.6 Score=33.87 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcC---ChhHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 134 LHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 134 ~~~~l~~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
..++++.++.+.. +..+.+.+++..++ ..|.. -+..+.|+..+++.++|+.++.+....++..|++..+.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4445555554432 34456666666664 33322 34455666666666666666666666666666665543
No 320
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.17 Score=45.97 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=64.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
-|.-+++..+|..++++|...+..-|.+. .....++.||....+.|.|.++++++-+.+|.++-.....-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 34556666777778887777777555442 255667777777777888888888887777777777777777777
Q ss_pred HcccHHHHHHHHHHHHh
Q 022205 178 SLQMYKQAAFCYEELIL 194 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~ 194 (301)
..|+-++|+.+..+...
T Consensus 440 ~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKS 456 (872)
T ss_pred HhcchHHHHHHHHHHHh
Confidence 77777777777766653
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.53 E-value=1.2 Score=37.17 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=88.9
Q ss_pred HHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhc----C---CC-------
Q 022205 109 EAKGLWAEAEKAYSSLLEDN----PLD----PVLHKRRVAIAKAQG-NFPTAIEWLNKYLETF----M---AD------- 165 (301)
Q Consensus 109 ~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~----p---~~------- 165 (301)
..+|+++.|..++.++-... |+. ...+++.|......+ +++.|..+++++.+.. + ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999986644 332 236778888888899 9999999999998873 1 11
Q ss_pred HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 166 HDAWRELAEIYVSLQMYK---QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
..++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.+....++ .+.+.+.+.+.+.--
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~---~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD---EEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC---hhHHHHHHHHHHHhc
Confidence 235678899999887755 55555555656678877776444455555777 888888888887653
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.48 E-value=0.18 Score=40.17 Aligned_cols=28 Identities=18% Similarity=0.390 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
+.+.+|.+..+.|++++|+.+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555555555555555555555443
No 323
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.28 Score=44.70 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
+.+-+.-+++..+|..+++.|...+..-|.| ......++.||....+.+.|.++++.|-+.+|.++......-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3345666778899999999999999988776 3456789999999999999999999999999999998888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 209 VLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 209 ~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
+....|. -++|+.+..+....
T Consensus 437 ~~~~E~~---Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDK---SEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcc---hHHHHHHHHHHHhh
Confidence 8888888 88898888776544
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.33 E-value=2.5 Score=39.65 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHhCCC--c----hhhHHHHHHHHHHcCCH
Q 022205 43 LRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAM-DCQCLDVAKDCIKVLQKQFPE--S----KRVGRLEGILLEAKGLW 114 (301)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~~a~~~~~~~~~ 114 (301)
+..+...+.......++.| ....++.++|..++ ...+++.|..++.+++..... . .....+++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3344444443334556666 46778888998887 678999999999999877632 2 22345678888887766
Q ss_pred HHHHHHHHHHHhcCCC----CHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhc--CCCHHHHH----HHHHHHHHcccH
Q 022205 115 AEAEKAYSSLLEDNPL----DPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETF--MADHDAWR----ELAEIYVSLQMY 182 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~----~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~----~lg~~~~~~~~~ 182 (301)
. |...+++.++...+ .+...+.+. ......+++..|+..++...... +.++.+.. .-|.+....+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 6 99999998885443 122222222 12222357777777777766654 23433221 223334444445
Q ss_pred HHHHHHHHHHH
Q 022205 183 KQAAFCYEELI 193 (301)
Q Consensus 183 ~~A~~~~~~al 193 (301)
+++++..+++.
T Consensus 196 ~d~~~~l~~~~ 206 (608)
T PF10345_consen 196 DDVLELLQRAI 206 (608)
T ss_pred hhHHHHHHHHH
Confidence 55555555443
No 325
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.27 E-value=0.89 Score=39.96 Aligned_cols=162 Identities=11% Similarity=-0.099 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh---
Q 022205 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--- 161 (301)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--- 161 (301)
-++++++.-.|-.+.+|+-........++-+.|+...++++...|. ....++.+|...++-+....+|+++...
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 4578888888999999999999999999999999999998887776 4455666666555544444444443221
Q ss_pred ---------------cCC-CH-----------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHc
Q 022205 162 ---------------FMA-DH-----------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD-VLYTL 213 (301)
Q Consensus 162 ---------------~p~-~~-----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~ 213 (301)
+|. .+ -+|..+-..-.+..-.+.|...|-++-+..--.+.++..-|. -|+..
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 110 01 123333333344455678888888876654233333333333 36677
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 214 GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|+ +.-|-..|+-.+...|+ ..-..+-...-...+++
T Consensus 446 ~d---~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~ind 481 (660)
T COG5107 446 GD---RATAYNIFELGLLKFPD-STLYKEKYLLFLIRIND 481 (660)
T ss_pred CC---cchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCc
Confidence 88 99999999999998885 33233333334445555
No 326
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.27 Score=40.20 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+..|++.++..+...|+++.+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34444555555555555555555555555555555555555555555555555555555443
No 327
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.27 E-value=0.91 Score=39.89 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
...|.++..++++.+|...|.+......+.+. ++.++....+-.++.+.-...+-..-+..|+++......|.+.
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 34455666666666666666666554433322 2222222223344555555555555555666666666666666
Q ss_pred HHcccHHHHHHHHHHHHhhC----C-----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 177 VSLQMYKQAAFCYEELILSQ----P-----------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~----p-----------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
++.+.+.+|+..+..--..- | ++...-...|.++..+|+ +.+++..+.+.+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~---f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR---FSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHH
Confidence 66666666665544332210 0 011122345777888888 88888888877653
No 328
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.20 E-value=2.3 Score=38.37 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=35.0
Q ss_pred HHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205 89 VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 89 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
+-++.+|.+..+|..+-.-+..+ -+++..+.|++.+...|..+.+|...........+|+...++|.+++.
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444455555555444444333 455555555555555555555555555555555555555555555443
No 329
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.19 E-value=3.1 Score=39.80 Aligned_cols=167 Identities=14% Similarity=-0.007 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHH--H
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPV--L 134 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~--~ 134 (301)
.-.-.|.+....|+++.|.++.+.++..-|.+ ..+....|.+..-.|++++|..+...+.+. +..... +
T Consensus 460 ~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~ 539 (894)
T COG2909 460 FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWS 539 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33345778888999999999999999988744 345667788888899999999999888775 222222 3
Q ss_pred HHHHHHHHHHcCChh--HHHHHHHHHH----HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----CCCC--HH-
Q 022205 135 HKRRVAIAKAQGNFP--TAIEWLNKYL----ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS----QPTV--PL- 201 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~--~A~~~~~~~l----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~--~~- 201 (301)
....+.++..+|+.. +....|...- ...|.+.......+.++...-+++.+..-....++. .|.. ..
T Consensus 540 ~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~ 619 (894)
T COG2909 540 LLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRL 619 (894)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHH
Confidence 444567788888433 3333333322 223443333333344443333366555555555543 2322 22
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+...++.+.+..|+ +++|.....+...+-.+
T Consensus 620 ~~~~LA~l~~~~Gd---l~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 620 ALSMLAELEFLRGD---LDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcC
Confidence 23478999999999 99999999988776443
No 330
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.96 E-value=0.12 Score=28.18 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcccHHHHHHH--HHHHHhhCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFC--YEELILSQP 197 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~--~~~al~~~p 197 (301)
.|+.+|-.+...|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555 224444443
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.94 E-value=0.69 Score=41.33 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=73.6
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (301)
.+..++++++....... +..|.- .......+..+..+|-++.|+...+ ++... -.+....|+.+.|.
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~r---FeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHR---FELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHH---HHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHH---hHHHHhcCCHHHHH
Confidence 45678888877776411 122322 2234556677778888888875322 23333 34456788888887
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
+..++ .+++..|..||...+..|+++-|..||+++-. +..+.-+|...|+ .+.-.+....|.
T Consensus 339 ~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~---~~~L~kl~~~a~ 400 (443)
T PF04053_consen 339 EIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD---REKLSKLAKIAE 400 (443)
T ss_dssp HHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT----HHHHHHHHHHHH
T ss_pred HHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC---HHHHHHHHHHHH
Confidence 76543 34678899999999999999999888887532 3345566667777 544444444433
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.83 E-value=0.089 Score=29.32 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (301)
.++.++|.+|...|++++|+.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 466788888888888888888888887653
No 333
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.32 Score=39.75 Aligned_cols=69 Identities=28% Similarity=0.219 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 170 (301)
.++-..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|++.++..++..|+++.+-.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 344556788899999999999999999999999999999999999999999999999999999877654
No 334
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.75 E-value=0.25 Score=48.01 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=77.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc----C---ChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
.+++...+.|+.|+..|++.-..-|...+ +.++.|.....+ | .+++|+..|++.. -.|.-|--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence 45667778999999999999998887654 777888777653 3 3566777766543 34666778888999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
+|.+.|++++-+++|.-|++..|..|..-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 99999999999999999999999987643
No 335
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=2.1 Score=37.14 Aligned_cols=130 Identities=13% Similarity=0.024 Sum_probs=92.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCC-C--------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-CHHHH
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFP-E--------SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLH 135 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p-~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~ 135 (301)
...++...++.+|..+-+..+.... . ....|+.+..++...|+...-...+...+.. +.. .....
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 3445566889999888777665321 1 2345667777888888877776666666542 222 23356
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhc--CC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETF--MA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
+.+-..|...+.|+.|.....+..--. .+ .+..++.+|.+..-+++|..|.++|-.|+...|.+.
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 667788889999999998887765211 11 245678899999999999999999999999999753
No 336
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.57 E-value=0.31 Score=33.21 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
.+..++|.++...|+ +++|+..+++++++..
T Consensus 42 ~all~lA~~~~~~G~---~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 42 YALLNLAELHRRFGH---YEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHH
Confidence 345666777777777 7777777777776644
No 337
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.54 E-value=0.34 Score=42.01 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
-..+..||.++++.+-|+....+.+-++|..+..+..-|.++..+.+|.+|...+--
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777777777777777666666666666666666666554443
No 338
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.50 E-value=0.25 Score=42.74 Aligned_cols=58 Identities=19% Similarity=0.063 Sum_probs=52.9
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
..|..||+..++.+-|+...-+.+.++|.++.-|...|.++..+.+ |.+|.+.+.-+.
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeR---y~eAarSamia~ 289 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLER---YSEAARSAMIAD 289 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999 999988776654
No 339
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.45 E-value=0.5 Score=32.17 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
...++.++...|++++|+..+++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444445555555555555554443
No 340
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=3.8 Score=37.27 Aligned_cols=137 Identities=18% Similarity=0.069 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh-----CC----------------CchhhHHHH---HHHHHHcCCHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-----FP----------------ESKRVGRLE---GILLEAKGLWA 115 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p----------------~~~~~~~~~---a~~~~~~~~~~ 115 (301)
.|.....+.+++..+..+|+.+-|..++.+++=. .| .+-..+..+ -..+.+.|-+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 5778888999999999999998888777766531 12 222222222 22345569999
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHccc---HHHH
Q 022205 116 EAEKAYSSLLEDNPL-DPVLHKRRVAIAK-AQGNFPTAIEWLNKYL-----ETFMADHDAWRELAEIYVSLQM---YKQA 185 (301)
Q Consensus 116 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l-----~~~p~~~~~~~~lg~~~~~~~~---~~~A 185 (301)
-|.++++-.++.+|. ++.+...+..+|. +..+|.=-|..++..- ..-|+- ..-..++..|..... -+.|
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHH
Confidence 999999999999998 8887666666664 4566666666666652 233432 233345666666554 4678
Q ss_pred HHHHHHHHhhCC
Q 022205 186 AFCYEELILSQP 197 (301)
Q Consensus 186 ~~~~~~al~~~p 197 (301)
...+.+|+...|
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 888999998877
No 341
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.38 E-value=1.3 Score=41.20 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh---------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR---------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 134 (301)
+..|..+|...+..-.++.|...|-+.-. +|.-.- --...+.+-..-|+|++|...|-.+-+.+ ..
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---LA- 766 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---LA- 766 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---hh-
Confidence 44555555555555555555555433221 111100 01233444455588888887775442211 11
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHH--------------------
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEEL-------------------- 192 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------------------- 192 (301)
..++...|+|-...++++..-.-..+ -..+|.++|..+..+..|++|.++|...
T Consensus 767 ----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE 842 (1189)
T KOG2041|consen 767 ----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELE 842 (1189)
T ss_pred ----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHH
Confidence 12233344443333333321111100 0234555555555555555555554432
Q ss_pred --HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 193 --ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 193 --l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
...-|++...+-.+|..+...|- -++|++.|.+
T Consensus 843 ~la~~Lpe~s~llp~~a~mf~svGM---C~qAV~a~Lr 877 (1189)
T KOG2041|consen 843 VLARTLPEDSELLPVMADMFTSVGM---CDQAVEAYLR 877 (1189)
T ss_pred HHHHhcCcccchHHHHHHHHHhhch---HHHHHHHHHh
Confidence 12247777777778888888888 8888877765
No 342
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.25 E-value=1.4 Score=36.63 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
|..+|.+|+.+.|.++..++.||.++...|+.=.|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888886654457777888777766
No 343
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.19 E-value=3.1 Score=35.25 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=99.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-------------------- 128 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------- 128 (301)
.+.+...+..+..+-++....++..+|++..++.+++.-- ..-..+|...++++++..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 3455567778888888999999999999999998887532 234556677777666411
Q ss_pred ---CCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCH
Q 022205 129 ---PLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVP 200 (301)
Q Consensus 129 ---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~ 200 (301)
..+. .+-.+++.|..++|+..+|++.++...+..|-.. ...-+|-.++....-|.+....+-+.=.+ .|...
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 0112 2445789999999999999999999988877331 23344555555544333332222221111 13332
Q ss_pred HHHHHHH-------------HHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 201 LYHLAYA-------------DVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 201 ~~~~~la-------------~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
...+.-+ +...+.|-...-..|++...++++.+|.
T Consensus 347 ~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 347 AICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence 2222111 1112222212245788899999999995
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.87 E-value=0.97 Score=35.35 Aligned_cols=73 Identities=22% Similarity=0.167 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcccHHHHH
Q 022205 113 LWAEAEKAYSSLLED-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAA 186 (301)
Q Consensus 113 ~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~lg~~~~~~~~~~~A~ 186 (301)
.-+.|...|-++-.. .-+++...+.+|..|. ..+.++++.++.+++++.+. +++.+..|+.++...|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445677666655442 2356777888887776 56788999999999988644 3888999999999999999884
No 345
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.85 E-value=0.87 Score=37.75 Aligned_cols=63 Identities=19% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+ ...|+..|.+.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHHHH
Confidence 45666788888888888888888888888888888888888888888888 8888888877655
No 346
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=2.3 Score=32.48 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=89.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHccc
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQM 181 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~~~ 181 (301)
+.+.+..++|+..|...-+.+-.. ..+..+.+.+....|+...|+..|.++-...|-. -.+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345688899999998877654332 3467788999999999999999999987765432 1234556677788899
Q ss_pred HHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 182 YKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 182 ~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
|++-..-.+..- .-+|--..+.-.||...++.|+ +..|.+.|.....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 988765554332 2234445577789999999999 9999999998876
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.76 E-value=0.74 Score=45.53 Aligned_cols=138 Identities=15% Similarity=0.059 Sum_probs=107.1
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-- 126 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-- 126 (301)
..+.|+....|..++..+...|+.++|+..-.++.-.. |+....+..++...+..++...|...+.++..
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 44567888889999999999999999998877665422 35566777888888888888999998888875
Q ss_pred ------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 127 ------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 127 ------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
.+|.-.....+++.++...++++.|+.+++.++..+-. ....+..++..+...+++..|+...+..
T Consensus 1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 35666667788999999999999999999999986421 2345666777777778887777766665
Q ss_pred Hh
Q 022205 193 IL 194 (301)
Q Consensus 193 l~ 194 (301)
+.
T Consensus 1126 ~~ 1127 (1236)
T KOG1839|consen 1126 YG 1127 (1236)
T ss_pred HH
Confidence 53
No 348
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.75 E-value=0.14 Score=28.28 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
++..||.+-...++|++|+.-|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555566666666666555543
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.74 E-value=5 Score=36.11 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=106.4
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
+-++..+.-...++.+++.. ..+..+++.++.+|... ..++=...+++.++.+-++...-..++..|.. ++-..+..
T Consensus 76 f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~ 152 (711)
T COG1747 76 FGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAE 152 (711)
T ss_pred hccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHH
Confidence 33444455555666666654 55666777888888876 45666778888888887777777777777666 67777777
Q ss_pred HHHHHHHhc--------------------CCCHHHHH--------------------HHHHHHHHcccHHHHHHHHHHHH
Q 022205 154 WLNKYLETF--------------------MADHDAWR--------------------ELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 154 ~~~~~l~~~--------------------p~~~~~~~--------------------~lg~~~~~~~~~~~A~~~~~~al 193 (301)
+|.+++... |++.+..+ .+-.-|....+|.+|+.+....+
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 777765432 22322211 11233445578999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHc-------------CC----CCcHHHHHHHHHHHhcccCC
Q 022205 194 LSQPTVPLYHLAYADVLYTL-------------GG----VDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~-------------~~----~~~~~~A~~~~~~al~~~p~ 235 (301)
+.+..+..+..++...+... .+ ..++-.++.-|++.+..+.+
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 99988887776666555440 00 12489999999999998876
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=11 Score=40.21 Aligned_cols=153 Identities=13% Similarity=0.053 Sum_probs=107.1
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 131 (301)
..+......|.+.|......|.++.|...+-.+.+.. -+.+....|..+..+|+-..|+..++..++.+-.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 5566788899999999999999999999888877754 56788899999999999999999999999644222
Q ss_pred -----H------HHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------------cccHHH--
Q 022205 132 -----P------VLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVS------------LQMYKQ-- 184 (301)
Q Consensus 132 -----~------~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~------------~~~~~~-- 184 (301)
. .+...++......|++ +.-++.|..+.+..|..-..++.+|..|.+ .|++..
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence 1 1233333444445553 456788999999999777777777755432 355555
Q ss_pred -HHHHHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 022205 185 -AAFCYEELILSQPTV--------PLYHLAYADVLYT 212 (301)
Q Consensus 185 -A~~~~~~al~~~p~~--------~~~~~~la~~~~~ 212 (301)
++..|.+++.-...+ ...|.-+|.....
T Consensus 1822 ~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred HHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 666677777554322 2345555544444
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.62 E-value=0.98 Score=37.45 Aligned_cols=62 Identities=23% Similarity=0.172 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35556666666777777777777777777777777777777777777777777777766654
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.58 E-value=5.2 Score=35.84 Aligned_cols=131 Identities=15% Similarity=-0.025 Sum_probs=78.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 146 (301)
...++..+.+.|-.+.|+.+. .++...+ .+..+.|+++.|.+.. ...+++..|..+|.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rF---eLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRF---ELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHH---HHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHh---HHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcC
Confidence 334455556667777777663 3444444 3446789999987643 34457889999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
+++-|..+|.++-. +..|..+|...|+.+.-.+....+...... ...-.+++.+|+ .++.+..+
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd---~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAALLLGD---VEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT----HHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHHHHcCC---HHHHHHHH
Confidence 99999999987532 334556666677765555555444433221 112234555666 66666665
Q ss_pred HHH
Q 022205 227 AST 229 (301)
Q Consensus 227 ~~a 229 (301)
.++
T Consensus 426 ~~~ 428 (443)
T PF04053_consen 426 IET 428 (443)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.56 E-value=3.5 Score=43.67 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=114.3
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH---hCC----CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK---QFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP 132 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 132 (301)
+.++|......-..+++ ..+-+-.+++..- ..| .....|...|++....|+++.|....-++.+.. -+
T Consensus 1628 ~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~ 1702 (2382)
T KOG0890|consen 1628 NSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LP 1702 (2382)
T ss_pred cchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cc
Confidence 44567666655555544 3344433444332 222 456789999999999999999999988887766 46
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHHcccH--HHHHHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----------------HDAWRELAEIYVSLQMY--KQAAFCYEELI 193 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~lg~~~~~~~~~--~~A~~~~~~al 193 (301)
.++...+..+...|+...|+.++++.++.+-.+ ..+...++......+++ ++-+++|+.+.
T Consensus 1703 ~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ 1782 (2382)
T KOG0890|consen 1703 EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAK 1782 (2382)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 678899999999999999999999999764222 12334445555555654 36678899999
Q ss_pred hhCCCCHHHHHHHHHHHHHcC-----C----CCcHHH---HHHHHHHHhcccC
Q 022205 194 LSQPTVPLYHLAYADVLYTLG-----G----VDNILL---AKKYYASTIDLTG 234 (301)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~~-----~----~~~~~~---A~~~~~~al~~~p 234 (301)
++.|.....++.+|..|.+.- + .+.+.. ++.+|.+++....
T Consensus 1783 ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1783 AILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGN 1835 (2382)
T ss_pred HHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcc
Confidence 999977666667764433221 0 111444 6777778877654
No 354
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=3.7 Score=33.84 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=121.3
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHH----HhC----CChHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAA----MDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGIL 107 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~ 107 (301)
..-+..++.+...++.. +|+...+|...-... +.. .-++.-++.+..+++.+|.+-.+|...-.+
T Consensus 45 keys~~aLklt~elid~-------npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~ 117 (328)
T COG5536 45 KEYSVRALKLTQELIDK-------NPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWM 117 (328)
T ss_pred hhcCHHHHHHhHHHHhh-------CHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 44556677777777766 677665555332211 111 224556778899999999999999888887
Q ss_pred HHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHHhcCCCHHHHHHH---HHHH
Q 022205 108 LEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIY 176 (301)
Q Consensus 108 ~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---g~~~ 176 (301)
+... .++..-....++.++.||.|-.+|...-.+. .....+..-.++-..++..++.+..+|... -...
T Consensus 118 Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 118 LELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred HHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 7765 6788888889999999999987765443333 333445555667778888999999998776 3333
Q ss_pred HHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Q 022205 177 VSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYAS 228 (301)
Q Consensus 177 ~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~ 228 (301)
+..|+ +++-+.+.-.++-.+|++..+|..+-.+.-. .-. +.+-++.+.+
T Consensus 198 ~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~---~~e~v~~L~k 256 (328)
T COG5536 198 FNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVM---IGEKVEDLGK 256 (328)
T ss_pred HhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHH---HHHHHHHHHh
Confidence 33443 4566677777777899998877665433222 223 5566666644
No 355
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=93.46 E-value=4.3 Score=34.45 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc--------------------------CCHHHHHHHHHHHHhcCC-CCH
Q 022205 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDNP-LDP 132 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~al~~~p-~~~ 132 (301)
-++|+.+-.-+....|..+.++-+.+.+.++. +-.+++...+.+++.... .--
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 36788888888899999999888777766554 235677777777776543 222
Q ss_pred HHHHHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 022205 133 VLHKRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA 205 (301)
Q Consensus 133 ~~~~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 205 (301)
...-.++.++... -+|..-..+|.-.....| +|.+-.|.+.+..+..-...++...+..... -.....++..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~ 370 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA 370 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence 2333344444332 345555555555555565 4666667777777777777787777766654 2344567788
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 206 YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.|..+.++|+ .++|...|++++.+.++
T Consensus 371 RadlL~rLgr---~~eAr~aydrAi~La~~ 397 (415)
T COG4941 371 RADLLARLGR---VEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence 8999999999 99999999999999886
No 356
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=5 Score=34.94 Aligned_cols=166 Identities=17% Similarity=0.106 Sum_probs=119.0
Q ss_pred hCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 76 DCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 76 ~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
..|.+ .+++..-..++..+|+...+|...-.++.. +.-+++-+.+...++..+|+.-.+|.....++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444 467777788888888877776554333322 22456777888999999999999999999999
Q ss_pred HHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q 022205 143 KAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL--- 213 (301)
Q Consensus 143 ~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 213 (301)
.+.+. +..-+.+++++++.+|.+..+|...-.+.... ....+=+.+..+++..++.|..+|.....++-.+
T Consensus 120 ~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 120 QKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred HhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 88765 57889999999999999988886554444332 3356778899999999999999988876665522
Q ss_pred ---CC---CCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205 214 ---GG---VDNILLAKKYYASTIDLTGGKNTKALF 242 (301)
Q Consensus 214 ---~~---~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (301)
|+ .+....-+..-..|+-.+|+ +.-+|+
T Consensus 200 ~~~g~~~~~~~l~sEle~v~saiFTdp~-DqS~Wf 233 (421)
T KOG0529|consen 200 EADGNFMPKELLQSELEMVHSAIFTDPE-DQSCWF 233 (421)
T ss_pred cccCccCCHHHHHHHHHHHHHHHhcCcc-ccceee
Confidence 21 11245556666778888996 555553
No 357
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.29 E-value=0.43 Score=39.66 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 178 (301)
|..+|.+|+...|++...++.+|.++...|+.-.|+-+|-+++-...-.+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999886654458888898888877
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.25 E-value=0.12 Score=25.67 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=6.7
Q ss_pred HHHHHHHHcccHHHHHH
Q 022205 171 ELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~ 187 (301)
.+|.++...|++++|..
T Consensus 6 ~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 6 ALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33334444444443333
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.25 E-value=1.5 Score=36.31 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (301)
...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+++.+++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345566677777777777777777777777777777777777777766666666654
No 360
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.09 E-value=5.8 Score=34.91 Aligned_cols=102 Identities=14% Similarity=-0.018 Sum_probs=65.5
Q ss_pred CchhHHHHHHH--HHHHHhCCChHHHHHHHHHHHHhC-----CCchhh--------HHHHHHHHHHcCCHHHHHHHHHHH
Q 022205 60 GPDVWTLYEQV--SIAAMDCQCLDVAKDCIKVLQKQF-----PESKRV--------GRLEGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 60 ~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~--------~~~~a~~~~~~~~~~~A~~~~~~a 124 (301)
+|+.|..+.-+ -..+....++.+-+...+.....+ .+...+ ...+.+++.-.|+|..|++.++..
T Consensus 69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 46777776644 344555566666555544421110 012222 334556778889999999988654
Q ss_pred Hh--------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 125 LE--------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 125 l~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
-- ..+-....++..|.+|+.+++|.+|+..|...+-.
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12234558899999999999999999999987753
No 361
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.06 E-value=1.5 Score=40.99 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=76.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH------H----hCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQ------K----QFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLED---------- 127 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~------~----~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------- 127 (301)
..|..+-+..+++.|+.+|++.- + .+|.. ...-...|.-+...|+++.|+..|-.+-..
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 33445555567777777765432 2 23422 122233456666677777777666433110
Q ss_pred --------------CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 128 --------------NP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 128 --------------~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
+. .-...|-.++.-|...|+++-|..+|.++-. +..--+.|-+.|+|++|.+.-.+.
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHh
Confidence 00 0111344455666666777777776665321 222345566777777776665554
Q ss_pred HhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 193 ILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 193 l~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
. .|.. ...+...+.-+-..|+ |.+|...|
T Consensus 818 ~--~~e~t~~~yiakaedldehgk---f~eaeqly 847 (1636)
T KOG3616|consen 818 H--GPEATISLYIAKAEDLDEHGK---FAEAEQLY 847 (1636)
T ss_pred c--CchhHHHHHHHhHHhHHhhcc---hhhhhhee
Confidence 3 2433 3345555666666676 65555544
No 362
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.04 E-value=3.3 Score=31.95 Aligned_cols=148 Identities=12% Similarity=0.047 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-----G 146 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----g 146 (301)
..+|++|..+|..-.+.+ ..+...+-+|..++. .++...|+..+..+.. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 367888888877666543 345566667766553 2578889998888766 45677777777776542 3
Q ss_pred C--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------------------ccHHHHHHHHHHHHhhCCCCH
Q 022205 147 N--FPTAIEWLNKYLETFMADHDAWRELAEIYVSL------------------------QMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 147 ~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~------------------------~~~~~A~~~~~~al~~~p~~~ 200 (301)
+ ..+|..++.++..++ +..+.+.|...|+.- .+.+.|..+--+|.++ +++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CCh
Confidence 3 668899999887765 455566666555443 3445555555555443 344
Q ss_pred HHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhcc
Q 022205 201 LYHLAYADVLYTLGG--VDNILLAKKYYASTIDL 232 (301)
Q Consensus 201 ~~~~~la~~~~~~~~--~~~~~~A~~~~~~al~~ 232 (301)
.+..++...| .+|+ .++.++|..+-.+|.++
T Consensus 201 ~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 201 QACANVSRMY-KLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHhhHHHHH-HccCCCCccHHHHHHHHHHHHHH
Confidence 4555554443 3333 23455666655555554
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.90 E-value=1.3 Score=28.78 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHcccHHHHHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRE---LAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---lg~~~~~~~~~~~A~~~~ 189 (301)
++...+..+|+..++++++..++.+.-|.. +..+|...|+|.+++.+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554444333322 233344445555554443
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.76 E-value=3.1 Score=35.26 Aligned_cols=119 Identities=15% Similarity=-0.071 Sum_probs=64.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------------------
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------------------- 165 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------------------- 165 (301)
-....+..+..+-++....+++.+|....++..++.- ..--..+|.+.|+++++.-..+
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r 268 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR 268 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence 3344455666667777777778888777776665542 2223556777777776642110
Q ss_pred ----HH--HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 166 ----HD--AWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 166 ----~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.. .-..|++|-.++|+..+|++.++...+-.|-. ..++-++-..+..+.- |......+-+
T Consensus 269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA---YADvqavLak 336 (556)
T KOG3807|consen 269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA---YADVQAVLAK 336 (556)
T ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 00 11245666666666666666666655554422 2344455555555554 4444444433
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.45 E-value=0.9 Score=29.57 Aligned_cols=59 Identities=7% Similarity=-0.094 Sum_probs=44.9
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH---LAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.-|.-++..++.++|+..++++++..++.+.-+ ..+..+|...|+ +.+++++-.+-+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345455677889999999999999888776544 445567888888 99998887766554
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.10 E-value=0.73 Score=25.05 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHcCChhHHHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~ 154 (301)
.+..+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.85 E-value=0.52 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHH
Q 022205 149 PTAIEWLNKYLETFMADHDAWR 170 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~ 170 (301)
+.+..+|++++...|.++..|.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~ 25 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWL 25 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 3344444444444444444443
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.72 E-value=0.31 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.+...+|.++...|+ +++|...+++
T Consensus 2 ~a~~~la~~~~~~G~---~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGD---PDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHhC
Confidence 467889999999999 9999988763
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.65 E-value=0.96 Score=37.41 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
...+..|...|.+.+|+.+.++++.++|-+...+..+-.++..+|+ --.|.++|++.-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHH
Confidence 3456777788888889988888888888888888888888888888 777777776543
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.59 E-value=2.8 Score=34.30 Aligned_cols=80 Identities=21% Similarity=0.055 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC
Q 022205 147 NFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLG 214 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~ 214 (301)
.....+.+++++.+.+... ......+|.-|+..|+|++|+.+|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445667777777655422 2345578899999999999999999886543322 345667788888888
Q ss_pred CCCcHHHHHHHHHHH
Q 022205 215 GVDNILLAKKYYAST 229 (301)
Q Consensus 215 ~~~~~~~A~~~~~~a 229 (301)
+ .+..+...-+.
T Consensus 233 ~---~~~~l~~~leL 244 (247)
T PF11817_consen 233 D---VEDYLTTSLEL 244 (247)
T ss_pred C---HHHHHHHHHHH
Confidence 8 77666654443
No 371
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.36 E-value=5.5 Score=30.78 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=95.2
Q ss_pred CchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHhcCCCHHHH
Q 022205 96 ESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAW 169 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (301)
..|....++|..+.. +.+|++|..+|..-...+. .+...+.+|..++. .++...|+..+..+.. -+++.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 567888889988765 5789999999988766553 34555666665543 4568889999998876 4578888
Q ss_pred HHHHHHHHHc-----cc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------CCC----------CcHHH
Q 022205 170 RELAEIYVSL-----QM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTL-----------GGV----------DNILL 221 (301)
Q Consensus 170 ~~lg~~~~~~-----~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~----------~~~~~ 221 (301)
..+|.++..- ++ .++|..++.++..++ +..+.+.|...|..- |.. .+.+.
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdk 186 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDK 186 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHH
Confidence 8888887643 23 679999999998664 556666666555543 111 34788
Q ss_pred HHHHHHHHhccc
Q 022205 222 AKKYYASTIDLT 233 (301)
Q Consensus 222 A~~~~~~al~~~ 233 (301)
|..+-.+|.+++
T Consensus 187 a~qfa~kACel~ 198 (248)
T KOG4014|consen 187 ALQFAIKACELD 198 (248)
T ss_pred HHHHHHHHHhcC
Confidence 888888888875
No 372
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=8.4 Score=32.83 Aligned_cols=171 Identities=15% Similarity=0.051 Sum_probs=113.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHH--HH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPV--LH 135 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~ 135 (301)
.++..+++.++|.+|+.....++.... .-..++..-...|....+..+|...+..+-.. .|.... .=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 457788999999999998887776432 12345566677888888888888777665431 122222 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC---CCHHHHH---HHHHHHHHcccHH--HHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHDAWR---ELAEIYVSLQMYK--QAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~---~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la 207 (301)
..-|.++..-.+|..|-.+|-++++-+. .+..+.. .+-.|-...+..+ .++-.-+.+++....+..+....+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 2346666777899999999999988542 1233332 2223333344444 455555667777777888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (301)
.++.+.. ..+|+.|+..|..-+..+| -++.++
T Consensus 293 eA~~nRS-LkdF~~AL~~yk~eL~~D~--ivr~Hl 324 (411)
T KOG1463|consen 293 EAFGNRS-LKDFEKALADYKKELAEDP--IVRSHL 324 (411)
T ss_pred HHhcCCc-HHHHHHHHHHhHHHHhcCh--HHHHHH
Confidence 8876442 2339999999999998888 444443
No 373
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.05 E-value=0.48 Score=26.10 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
.++..+|.+-...++ |++|+..|++++++..
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 467889999999999 9999999999998743
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=91.01 E-value=5.8 Score=34.79 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchh--hHH--HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--VGR--LEGILLEAKGLWAEAEKAYSSLLEDN 128 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~--~~a~~~~~~~~~~~A~~~~~~al~~~ 128 (301)
..+..++..++|..|..++..+...-|.... .+. ..|.-+...-++.+|.+.++..+...
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4577888999999999999999987554443 222 33445566789999999999988753
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.96 E-value=0.76 Score=23.60 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
|+++.|...|++++...|.++.+|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777778888887777777777766543
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.73 E-value=8.4 Score=31.79 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=37.5
Q ss_pred HhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~ 126 (301)
+...+.++|+..|.++++..|... .++-..-.+.+++++|++-+..|.+.+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344578888888888888877543 3445566678888888888887777654
No 377
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=6.5 Score=32.47 Aligned_cols=164 Identities=13% Similarity=0.033 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChhH
Q 022205 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT 150 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--g~~~~ 150 (301)
..|++.-...+..+|..-.+|...-.+... ..-++.-+.++..++..+|.+-.+|...-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 357777777777778776676665555444 12345667888999999999999999888777765 66788
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH------HHcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHcCCCC---c
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N 218 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~---~ 218 (301)
-..+.++.++.+|.+...|...-.+. ..-..+....++-..++..++.|..+|... -...+..|+.. -
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 88889999999999987776543333 223344455666667788899999888776 33334455521 1
Q ss_pred HHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 219 ILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 219 ~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
+++-+.+.-.++-.+|+ +..+|..+.
T Consensus 209 l~~eL~~i~~~if~~p~-~~S~w~y~r 234 (328)
T COG5536 209 LEKELEYIFDKIFTDPD-NQSVWGYLR 234 (328)
T ss_pred HHHHHHHHHhhhhcCcc-ccchhhHHH
Confidence 45667777777778896 666665443
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.69 E-value=0.84 Score=39.97 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
...+..++.-.|+|..|++.++..- ...+-+..+++.+|-+|+.+++|.+|+++|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999999987531 1112335678899999999999999999999987
No 379
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.60 E-value=12 Score=35.10 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
-|.+...+-.+|..+...|.-++|+.+|-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 466777777788888888888888777654
No 380
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.50 E-value=4.7 Score=38.01 Aligned_cols=120 Identities=15% Similarity=0.062 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSL 179 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~ 179 (301)
+-.++.-|...|+|+-|.+.|.++- .+..-..+|.+.|+|.+|.++-.+... |.. ...|...+.-+-..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEH 837 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhh
Confidence 4456777888899999988887652 223445677788888888777665432 222 22233333333333
Q ss_pred -------------ccHHHHHHHHHHHH----------hhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 180 -------------QMYKQAAFCYEELI----------LSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 180 -------------~~~~~A~~~~~~al----------~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
|..+.|+.+|.+.- +..|+. ...+..+|.-+...|+ .+.|..+|.++-...
T Consensus 838 gkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~---lkaae~~flea~d~k 912 (1636)
T KOG3616|consen 838 GKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD---LKAAEEHFLEAGDFK 912 (1636)
T ss_pred cchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC---hhHHHHHHHhhhhHH
Confidence 44556666665431 112322 3567888988999999 888888887765543
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.45 E-value=16 Score=33.08 Aligned_cols=135 Identities=15% Similarity=-0.034 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------- 127 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------- 127 (301)
-..+..++.++..+ ..+.-..+++++.+.+-++...-..++..|.. ++...+..+|.+++-.
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK 176 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK 176 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 44566677777777 34556677777777776777667777877777 7778888888777641
Q ss_pred ----CCCCHHHH--------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----
Q 022205 128 ----NPLDPVLH--------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----- 178 (301)
Q Consensus 128 ----~p~~~~~~--------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----- 178 (301)
-|++.+.. ...-.-|....++++|+..+.-.++.+..+..+.-++-..+..
T Consensus 177 L~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~ 256 (711)
T COG1747 177 LPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGH 256 (711)
T ss_pred HHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccc
Confidence 13332211 1122334456789999999999999998887777666555544
Q ss_pred ---------------cccHHHHHHHHHHHHhhCCCCH
Q 022205 179 ---------------LQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 179 ---------------~~~~~~A~~~~~~al~~~p~~~ 200 (301)
-.++..|+.-|++.+..+..+.
T Consensus 257 ~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 257 SQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 4567788888888887766553
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.63 E-value=12 Score=30.46 Aligned_cols=162 Identities=18% Similarity=0.150 Sum_probs=81.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCC-chhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAK 143 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~ 143 (301)
+..+|...-+.|+|++++.++++++..+|+ +..=..+++.+|-. .|..-.+...+........... .....+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 345677888899999999999999998763 23333444444422 2334444444444333222210 11111111111
Q ss_pred HcCChhHHHHHHHHHHH-------hcCCCHH----HHHHHHHHHHHc-----c-----cHHHHHHHHHHHHh-----hCC
Q 022205 144 AQGNFPTAIEWLNKYLE-------TFMADHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----SQP 197 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~-------~~p~~~~----~~~~lg~~~~~~-----~-----~~~~A~~~~~~al~-----~~p 197 (301)
.. =.++-...+..++. -...++. .+-..|+.|.-. | -.+.|..+|++|+. +.|
T Consensus 84 ~k-ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 84 KK-IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence 10 01122222333322 2222322 122345444322 2 24688888988884 467
Q ss_pred CCHH---HHHHHHHHHH-HcCCCCcHHHHHHHHHHHhcc
Q 022205 198 TVPL---YHLAYADVLY-TLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 198 ~~~~---~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~ 232 (301)
.+|. ...+++..++ .+|+ .++|+...++++..
T Consensus 163 ~~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 163 THPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFDE 198 (236)
T ss_dssp TSHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHH
Confidence 7775 3445555554 4788 88888888877754
No 383
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=87.72 E-value=15 Score=30.60 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
.+.|...+.+++.++|....+...+-.+--..|.
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fge 148 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGE 148 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCC
Confidence 3677777888888888877777666666555555
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.10 E-value=16 Score=30.22 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----CCchhhHHHHHHHHHHcCCHH-HHHHHHHHHHh------cCCC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----PESKRVGRLEGILLEAKGLWA-EAEKAYSSLLE------DNPL 130 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~------~~p~ 130 (301)
..++++.-+..+++.|++..|.++..-.++.. |.+......+..+......-+ +-..+.+++++ ..-.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 34455555666667777766665554444421 222223233444444332211 12222223322 2234
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHH----------------HHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKY----------------LETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al 193 (301)
++..+..+|..+.+.|++.+|..+|-.. ..-+|...+.+...|.+ |...++...|...+..-+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6778888888888888888777665321 12234555555544443 455677777777665555
Q ss_pred hh----CC-----------CCHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 194 LS----QP-----------TVPLYHL-AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 194 ~~----~p-----------~~~~~~~-~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+. +| ..|...+ .+-......++...|..-.+.|+..++.+|. ....+-.++..|..+.
T Consensus 169 ~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~-~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 169 SKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPS-FKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHH-THHHHHHHHHHHH---
T ss_pred HHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHH-HHHHHHHHHHHHCCCC
Confidence 44 22 2222111 1111122233333355556666666666663 5555555665555543
No 385
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=87.04 E-value=10 Score=35.86 Aligned_cols=168 Identities=16% Similarity=0.068 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHH---cCCHHHHHHHHHHHHhcC-CCCH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEA---KGLWAEAEKAYSSLLEDN-PLDP 132 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~-p~~~ 132 (301)
.+.+..++...|.+..+|+.-+.+.+.+-+. |+. ..+.+..+..+-+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4456667777888889999888887776553 532 2333444444433 378888998888777744 5556
Q ss_pred HHHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCC-----
Q 022205 133 VLHKRRVAIAKA---------QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQP----- 197 (301)
Q Consensus 133 ~~~~~l~~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p----- 197 (301)
+.+...|.+|.. .+..+.|+.+|+++.+..|.. .+-.+++.++...|. |+...+.-+-+.+++.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 677777777754 355678999999999998864 233455655555543 4444444333333321
Q ss_pred CC---HHHHHHHHH---HHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 198 TV---PLYHLAYAD---VLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 198 ~~---~~~~~~la~---~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.. ...|+-.|. +-...++ +.+|+..-+..+++.|.
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd---~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLAND---YQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccC---HHHHHHHHHHHhccCCc
Confidence 11 111222221 1223456 99999999999999885
No 386
>PF12854 PPR_1: PPR repeat
Probab=87.02 E-value=1.8 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNK 157 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (301)
...|..+...+.+.|+.++|.++|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555566666666666665543
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.89 E-value=6.8 Score=32.06 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcc
Q 022205 113 LWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQ 180 (301)
Q Consensus 113 ~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~ 180 (301)
.....++.+.+++..... -..+...+|..|+..|++++|+.+|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344556777777653321 23366689999999999999999999997665433 345567888888899
Q ss_pred cHHHHHHHHHHHH
Q 022205 181 MYKQAAFCYEELI 193 (301)
Q Consensus 181 ~~~~A~~~~~~al 193 (301)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9888877655443
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.89 E-value=9.6 Score=27.52 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=61.8
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcccHHHHH
Q 022205 119 KAYSSLLEDNP---LDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHD-----AWRELAEIYVSLQMYKQAA 186 (301)
Q Consensus 119 ~~~~~al~~~p---~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~-----~~~~lg~~~~~~~~~~~A~ 186 (301)
..|+..+.... +...+|.....-... .|....-..+++++++...+++. -+..+-..|...-. .+.
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~ 83 (126)
T PF08311_consen 6 QEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPR 83 (126)
T ss_dssp HHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHH
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHH
Confidence 34444444322 334455444433322 24555666778888777655421 12222222222222 777
Q ss_pred HHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 187 FCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 187 ~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
.+|..+.. +.-..+..|...|..+...|+ +++|.+.|+.+|
T Consensus 84 ~if~~l~~~~IG~~~A~fY~~wA~~le~~~~---~~~A~~I~~~Gi 126 (126)
T PF08311_consen 84 EIFKFLYSKGIGTKLALFYEEWAEFLEKRGN---FKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhhC
Confidence 77777664 445668888889999999999 999999988765
No 389
>PF12854 PPR_1: PPR repeat
Probab=86.75 E-value=2.1 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
|..+|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777888888888888877764
No 390
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=1.5 Score=37.33 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=37.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
+++.+-...+.+..|+.....+++.++....+++..+..+....++++|+..++.+....|.+..+...+
T Consensus 280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555555555443333
No 391
>PF13041 PPR_2: PPR repeat family
Probab=86.16 E-value=4.8 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 392
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=86.16 E-value=5.7 Score=34.61 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
+|+..++.++..+|.+......+..+|...|-.+.|...|.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444455555544445555555555554444443
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.60 E-value=2.1 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+.||.+|...|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566666666666666666666663
No 394
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.41 E-value=15 Score=33.40 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
....+.+.......|+.+......+.++...|+.+.|+..++..+. +.. ...++.+|.++..+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4556666677778899999999999999999998888999988877 221 2256678888888899999999999
Q ss_pred HHHHhcCCCHHHHHHHH
Q 022205 157 KYLETFMADHDAWRELA 173 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg 173 (301)
.....+.-+...|..++
T Consensus 328 ~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHHhhhhhhHHHHHHHH
Confidence 88887765555555555
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.36 E-value=25 Score=30.90 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHH--HHHHcCChhHHHHHHHHHHHh
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--LHKRRVA--IAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~--~~~~~g~~~~A~~~~~~~l~~ 161 (301)
...+..++..++|..|...+......-|.... .+..++. .+...-++.+|...++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566778889999999999999986344333 3444433 445678899999999988765
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.14 E-value=26 Score=30.80 Aligned_cols=125 Identities=15% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCC-C--------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC-HHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNP-L--------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD-HDAWREL 172 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p-~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~l 172 (301)
+..++++.+|...-+..+.... . ....|+.+..+|...|+...-...+...+.. +... ....+.|
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 3446889998888777665211 1 1336777888888888877666666655543 1111 3344556
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhC--C--CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQ--P--TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~--p--~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
-..|...+.|+.|-+...++.--. . ......+.+|.+..-.++ |..|.+++.+|+...|.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence 777888899999988877765211 1 224567788999999999 99999999999999995
No 397
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=84.95 E-value=38 Score=32.59 Aligned_cols=120 Identities=10% Similarity=0.043 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cccHHHHHHH
Q 022205 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFC 188 (301)
Q Consensus 112 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~ 188 (301)
+..++-+..++.-+..++.+...+..|..++...|++++-...-....++.|.++..|.....-... .+.-..+...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444555666666667777777777777778888888777777777777778777777765544332 2455666677
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHhcc
Q 022205 189 YEELILSQPTVPLYHLAYADVLYTLGG----VDNILLAKKYYASTIDL 232 (301)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~~~~----~~~~~~A~~~~~~al~~ 232 (301)
|++++. +-.++..|...+.....-++ .++++.-...|.+++..
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 777774 23344444444444333322 12267777777777654
No 398
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.86 E-value=17 Score=28.57 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 149 PTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 149 ~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
++|...|-++-.. .-+++...+.||..|. ..+.++|+..+-+++++.+. ++.++..++.+++..|+ ++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~---~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN---YEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc---hhhhh
Confidence 4555555443221 1245778888887776 56778888888888877543 47888888888888888 77764
No 399
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.44 E-value=13 Score=32.46 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C------C
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--L------D 131 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~------~ 131 (301)
....+..++..|...|+++.|+++|.++..-.. .....+...-.+....|+|..-..+-.++...-. . .
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 455677888888888888888888888554332 2233455555666777888777777766655310 0 0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKY 158 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (301)
+.+...-|.+....+++..|..+|-.+
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 113344455556666777777776554
No 400
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.39 E-value=23 Score=33.12 Aligned_cols=112 Identities=15% Similarity=-0.005 Sum_probs=57.1
Q ss_pred HHHHHHcCCHHHHHHHH----------HHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAY----------SSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~----------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
|..+...|+.++|+... +-+-+.+..+.+.+..++..+.....+.-|.+.|.+.-. .-.+..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 44555566666665532 111122333334444444444445555555555544211 112345
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
++...++|++|....++--+.- +.+++..|.-+....+ |++|.+.|.+|=
T Consensus 782 lHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkAG 831 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKAG 831 (1081)
T ss_pred heeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHhc
Confidence 5666788888876655433332 3355556666666666 666666665543
No 401
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.21 E-value=14 Score=35.34 Aligned_cols=52 Identities=21% Similarity=0.145 Sum_probs=28.2
Q ss_pred HHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 126 (301)
.++..-|+-|+.+.+.--. ++ .-..++...|..++..|++++|...|-+.+.
T Consensus 344 L~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 3444555556555433221 12 2234455566667777777777777766654
No 402
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=20 Score=30.44 Aligned_cols=99 Identities=12% Similarity=-0.066 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HD 167 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~ 167 (301)
-..++..+|..|.+.|+-+.|.+.+.+..+..-. -.-...++|..|....-..+.+...+..++...+- -.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 4578899999999999999999999988774422 22245567777766655566666666666554321 11
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.-..-|..++...+|.+|-..|-.++..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 2334577788889999999999888754
No 403
>PF13041 PPR_2: PPR repeat family
Probab=83.83 E-value=6.4 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
...|..+...+.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 345566666666666666666666666654
No 404
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.57 E-value=21 Score=28.58 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=33.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
+...+...+|+...+.-++..|.+......+..++.-.|+|.+|...++-+-++.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344555555555555555556555555555555555666666665555555555544
No 405
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.46 E-value=7.1 Score=31.15 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=52.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
.-+.+.+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|.+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456778889999999999999999988888888999999999999999988888888764
No 406
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.31 E-value=3.2 Score=23.72 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=9.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLL 125 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al 125 (301)
+|..|..+|+.+.|...++.++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444444444444444444444
No 407
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.78 E-value=15 Score=34.92 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=83.1
Q ss_pred CCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205 77 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 146 (301)
-|+-+.|+...-.+++.. |-.+..+.+.|++|-.+ +..+.|+++|+++.+..|.... -.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 478889998877777655 56777888888887554 5667899999999999986433 345666666665
Q ss_pred C-hhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHH---HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205 147 N-FPTAIEWLNKYLETFM-----A---DHDAWRELAEIY---VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (301)
Q Consensus 147 ~-~~~A~~~~~~~l~~~p-----~---~~~~~~~lg~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (301)
+ ++...+.-.-...++. . ....|...|..+ .-.+++.+|+...+..+++.|-.+.....++.+..
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~l 411 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENILL 411 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHHH
Confidence 4 2322222222222221 0 011122222222 23478899999999999998876665555554443
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.74 E-value=5.6 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 112 (301)
...+...+..|++.-|..+++.++..+|++..+..+++.++.+.|
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777777777777776666544
No 409
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.96 E-value=8.5 Score=28.44 Aligned_cols=50 Identities=26% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
.+.....+...+..|++.-|......++..+|++..+....+.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666666666666665554
No 410
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=81.61 E-value=4.3 Score=32.66 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHc------CCCCcHHHHHHHHHHHhcccCC
Q 022205 202 YHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 202 ~~~~la~~~~~~------~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+...|..+... ++.++...|+.++++|+.++|.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 455566666432 2333489999999999999985
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.10 E-value=30 Score=28.60 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=76.2
Q ss_pred hCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCChh-
Q 022205 76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHKRRVAIAKAQGNFP- 149 (301)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~- 149 (301)
..+++++|++++..... .+.+.|++.-|.+...-.++ ..+.+.....+++.+....+.-+
T Consensus 2 ~~kky~eAidLL~~Ga~--------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL--------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HTT-HHHHHHHHHHHHH--------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred ccccHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Confidence 46778888887755443 33444444444333322222 23344444556666666654322
Q ss_pred HHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH----------------HhhCCCCHHHHHHHH
Q 022205 150 TAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEEL----------------ILSQPTVPLYHLAYA 207 (301)
Q Consensus 150 ~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la 207 (301)
+-..+.+++++.. -.+|..+..+|..+.+.|++.+|..+|-.. .+-.|.....+...|
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 3444555555543 145889999999999999999888776321 122355555554444
Q ss_pred HH-HHHcCCCCcHHHHHHHHHHHhcc
Q 022205 208 DV-LYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 208 ~~-~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.+ |...++ ...|...+..-++.
T Consensus 148 VL~yL~l~n---~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGN---LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTB---HHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---HHHHHHHHHHHHHH
Confidence 44 556688 88888877666655
No 412
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.27 E-value=3.4 Score=20.73 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=10.7
Q ss_pred HHHHHHHHHcccHHHHHHHHHHH
Q 022205 170 RELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
..+-..|.+.|++++|...|++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 33444444444555554444443
No 413
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.90 E-value=47 Score=29.58 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh------HHHHHHHHHHcCC--------------HHHHHHHHHHH
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV------GRLEGILLEAKGL--------------WAEAEKAYSSL 124 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~a~~~~~~~~--------------~~~A~~~~~~a 124 (301)
.....+|..++-.|+|+.|...|+.+.+.+..+... .-+.|.+.+..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 355678999999999999999999999877544322 2233444444442 23333334432
Q ss_pred H----hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--cCC-----CHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 125 L----EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--FMA-----DHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 125 l----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
- .....-..+....+.++...|.+.+|...+-+.... ..+ .+-.+-.+|.++ ..+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~ 354 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASL 354 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccc
Confidence 1 111122234555666777788877777766665544 211 122233344444 111
Q ss_pred hh-CC--C-----CHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 194 LS-QP--T-----VPLYH-LAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 194 ~~-~p--~-----~~~~~-~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
.. .| . -...| ..-|.-|...|. ...|..+|.+++..-.
T Consensus 355 ~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~---~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 355 RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQ---KKHALRCYKQALQVYE 401 (414)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhC
Confidence 11 11 1 01122 334677888999 9999999999988754
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.88 E-value=20 Score=33.17 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=60.0
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (301)
...|+++.|...+..+- .......+..+..+|-.++|+ ...++.. ..-.+..+.|+++.|..+
T Consensus 597 vmrrd~~~a~~vLp~I~------k~~rt~va~Fle~~g~~e~AL-------~~s~D~d----~rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP------KEIRTKVAHFLESQGMKEQAL-------ELSTDPD----QRFELALKLGRLDIAFDL 659 (794)
T ss_pred hhhccccccccccccCc------hhhhhhHHhHhhhccchHhhh-------hcCCChh----hhhhhhhhcCcHHHHHHH
Confidence 33456665554332222 122334455556666666554 3333321 223455677888888776
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
..+ .++..-|..||++....+++..|.+||.++-.
T Consensus 660 a~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 660 AVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 554 35677888999999999999999999988753
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=78.77 E-value=16 Score=31.77 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=49.8
Q ss_pred HhcCCCCHHHHHHHHH---HHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 125 LEDNPLDPVLHKRRVA---IAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 125 l~~~p~~~~~~~~l~~---~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
.+..|.+..+....-. .+...++ .-+|+.+++.++..+|.++.....+..+|...|-.+.|...|...
T Consensus 170 te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 170 TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 4555555543333222 2233333 457889999999999999999999999999999999999998753
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=40 Score=28.32 Aligned_cols=99 Identities=10% Similarity=-0.095 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HH
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DA 168 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~ 168 (301)
..++..+|..|.+.++.+.+.+++.+.++..... .+ .-.++|.+|..+.-..+.++.....++...+-- ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 5789999999999999999999999888744221 22 345677777776667788888888887754321 12
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
-...|...+...+|.+|-..+...+...
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2346777888889999988888777543
No 417
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=77.81 E-value=23 Score=25.42 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTV---------------PLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
+..+|+..++.+++-.++-+|++|+.+..+- .....++|..+...|+ .+-.++|++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd---~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGD---SDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCC---hHHHHHHHHHHH
Confidence 3456677777777777777777777442111 1245678888889998 888888886553
No 418
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=2.5 Score=36.00 Aligned_cols=75 Identities=21% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
..++.+-+..+.+..|+.....++..+++...+++..+..+....++++|++.+..+....|++......+..+-
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 335566666666666666666666666666667777777777777777777777777777776665554444443
No 419
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=75.50 E-value=7.6 Score=19.84 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
|..+-..|.+.|++++|...|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444455555556666665555544
No 420
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.34 E-value=14 Score=23.86 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=5.1
Q ss_pred HHhhCCCCHHH
Q 022205 192 LILSQPTVPLY 202 (301)
Q Consensus 192 al~~~p~~~~~ 202 (301)
++...|+++.-
T Consensus 39 ~~~~~pD~~~k 49 (75)
T cd02682 39 IVKNYPDSPTR 49 (75)
T ss_pred HHHhCCChHHH
Confidence 33445555543
No 421
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.14 E-value=29 Score=25.48 Aligned_cols=30 Identities=3% Similarity=-0.239 Sum_probs=17.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCchhhH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
.-.+..|..++..+++.+.....+-...-|
T Consensus 10 K~~ildG~V~qGveii~k~v~Ssni~E~NW 39 (161)
T PF09205_consen 10 KERILDGDVKQGVEIIEKTVNSSNIKEYNW 39 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHS-HHHHTH
T ss_pred HHHHHhchHHHHHHHHHHHcCcCCccccce
Confidence 334556777777777777777655444333
No 422
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=73.98 E-value=6.7 Score=31.60 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=16.2
Q ss_pred HcccHHHHHHHHHHHHhhCCCC
Q 022205 178 SLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~ 199 (301)
..++...|+.++++|+.++|..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCC
Confidence 3456778888888888888764
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.92 E-value=15 Score=28.64 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+...++.++..| ++..+..++.++...|+.++|....+++....|
T Consensus 131 ~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445555555 355555555666666666666666666555555
No 424
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=73.24 E-value=58 Score=27.79 Aligned_cols=171 Identities=11% Similarity=0.002 Sum_probs=98.6
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--C--chhhHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--E--SKRVGRLEGILLEAKGLWAEAEKAYSSLLE---DNP 129 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p 129 (301)
-...|+.....+..|...+..|+|..|-.++-......+ + ...+....-..-.-..+|+.|++.+.+.-+ ..+
T Consensus 122 ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 122 YNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 345888899999999999999999999887655444332 2 222322222233345789999988876644 333
Q ss_pred CCHH-------HHH---HHHHHHHHcCChhHHHHHHH------HHHHhcCCCHHHHHHHHHHHHHc-ccHHHHHHHHHHH
Q 022205 130 LDPV-------LHK---RRVAIAKAQGNFPTAIEWLN------KYLETFMADHDAWRELAEIYVSL-QMYKQAAFCYEEL 192 (301)
Q Consensus 130 ~~~~-------~~~---~l~~~~~~~g~~~~A~~~~~------~~l~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a 192 (301)
-... .|. .+-..+-+-+--+.-+..|- .++ ....|.....|+.+..-. .....+++-+-++
T Consensus 202 f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaI--Qt~cPhllRYLatAvvtnk~~rr~~lkdlvkV 279 (432)
T KOG2758|consen 202 FSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAI--QTSCPHLLRYLATAVVTNKRRRRNRLKDLVKV 279 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHH--HhhCHHHHHHHHHHhhcchHhhHHHHHHHHHH
Confidence 2221 111 11111111111222222211 122 234567777777777665 6677788888888
Q ss_pred HhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 193 ILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 193 l~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
+...... ...-...-.|++-.=+ |+.|.+.++++-+.
T Consensus 280 IqqE~ysYkDPiteFl~clyvn~D---FdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 280 IQQESYSYKDPITEFLECLYVNYD---FDGAQKKLRECEEV 317 (432)
T ss_pred HHHhccccCCcHHHHHHHHhhccc---hHHHHHHHHHHHHH
Confidence 8664321 1122344566677778 99999988887554
No 425
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.91 E-value=76 Score=30.78 Aligned_cols=31 Identities=10% Similarity=-0.145 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (301)
....+....|..++..|++++|...|-+.+.
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 4667788889999999999999999877775
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.66 E-value=57 Score=27.42 Aligned_cols=171 Identities=13% Similarity=0.060 Sum_probs=103.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhC------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHH-
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHK- 136 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~- 136 (301)
.++..+++.|.|.+|+..+..++... |.-..++..-..+|....+..++...+..+-. -.|....+..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 45778889999999999988777643 23345566667778777777777666655433 2243333322
Q ss_pred -HHHHHHHHcCChhHHHHHHHHHHHhcCC---CHHHHHH-----HHHHHHHcccHHHHHHHHHHHHh-hCCCCHHHHHHH
Q 022205 137 -RRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWRE-----LAEIYVSLQMYKQAAFCYEELIL-SQPTVPLYHLAY 206 (301)
Q Consensus 137 -~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~-----lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l 206 (301)
.-|..+..-.+|..|-.+|-++++-+.. +..+... |..+....-.--.++-.-+..++ .+.....+....
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~av 289 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAV 289 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHH
Confidence 2355666778899999999999886532 2333332 33333322222223222223333 334455666667
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhh
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (301)
+.++-... ..+|..|+..|..-+..+| ..|.++
T Consensus 290 aea~~NRs-L~df~~aL~qY~~el~~D~--~iRsHl 322 (421)
T COG5159 290 AEAFGNRS-LKDFSDALAQYSDELHQDS--FIRSHL 322 (421)
T ss_pred HHHhCCCc-HhhHHHHHHHhhHHhccCH--HHHHHH
Confidence 76654321 2339999999999888877 455554
No 427
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.34 E-value=10 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=8.8
Q ss_pred HcccHHHHHHHHHHHHh
Q 022205 178 SLQMYKQAAFCYEELIL 194 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~ 194 (301)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555555543
No 428
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.85 E-value=24 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~a 124 (301)
.|.-+-..|++.+|+.+|+.+
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~a 32 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKA 32 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 334444445555555544443
No 429
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=71.34 E-value=12 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (301)
.|..+..++...|+++.|..+++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355566677777888888777777665
No 430
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=71.19 E-value=60 Score=27.11 Aligned_cols=112 Identities=10% Similarity=-0.010 Sum_probs=66.7
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCC--chhhHHHHHHHH---HHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPE--SKRVGRLEGILL---EAKGL----WAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~---~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
..++..++|++=-..+.+..+.... .....+..+... ..... ...-...++.-+...|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3456677787777777776654321 111111111111 11111 11345666666778888888888777777
Q ss_pred HHc-----C-----------------ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 143 KAQ-----G-----------------NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 143 ~~~-----g-----------------~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
... | -.+.|...+.+++.++|....+...+-.+-...|..+
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 652 1 1567888888999999998888777666665555543
No 431
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.12 E-value=11 Score=24.33 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=6.9
Q ss_pred ccHHHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELI 193 (301)
Q Consensus 180 ~~~~~A~~~~~~al 193 (301)
|++++|+.+|..++
T Consensus 20 gny~eA~~lY~~al 33 (75)
T cd02680 20 GNAEEAIELYTEAV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44455555554444
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.03 E-value=47 Score=25.81 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC--------------hHHHHHHHHHHHHh
Q 022205 28 LCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC--------------LDVAKDCIKVLQKQ 93 (301)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~ 93 (301)
.+.+|.....+........+.++..+............+...+. -...|+ .+.|+.+++.+-+.
T Consensus 21 c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLs--RI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E 98 (200)
T cd00280 21 CRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLS--RIAEGKNLDCQFENDEELTPLESALMVLESIEKE 98 (200)
T ss_pred HHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHH--HHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHh
Confidence 34455555555566666667777553333332222222222222 222332 46788888888877
Q ss_pred CCCchh--------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 94 FPESKR--------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 94 ~p~~~~--------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.|.... +-.....++...|.+++|.+.+++... +|++......|..+-...
T Consensus 99 ~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 99 FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 663211 122334577888999999999999888 777766655555544433
No 433
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.87 E-value=16 Score=34.58 Aligned_cols=98 Identities=20% Similarity=0.111 Sum_probs=53.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 178 (301)
|..++..+++..|.--|..++..-|.+ .....+.+.++.. .|++..++.-..-++...|....+.+..+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 444455555555555555555544422 2233333333332 4566666666666666666666666666666666
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHH
Q 022205 179 LQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 179 ~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
.+.++-|++...-.....|.+..+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchH
Confidence 666666666655555556666443
No 434
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.77 E-value=9.8 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=10.6
Q ss_pred HcCChhHHHHHHHHHHHh
Q 022205 144 AQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~ 161 (301)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 345566666666666554
No 435
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=70.74 E-value=9.3 Score=33.28 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---------CcHHHHHHHHHHHhcccCC
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV---------DNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------~~~~~A~~~~~~al~~~p~ 235 (301)
.-+..|+.++++|.. .++|..|..+|.++..+|+. +-|.+|...+.+|-....+
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~G 394 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNG 394 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 447788888888865 55677888888888888762 2378899888888776543
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.63 E-value=23 Score=27.62 Aligned_cols=49 Identities=24% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+..++..++.+...| ++.++..++.++...|+ .++|.....++..+-|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGD---PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCc
Confidence 344555666666666 46777778888888888 88888888888888884
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.16 E-value=34 Score=23.91 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.+..+|...--....++|..+.+-+-........+...+...+..+|+|++| +.... ....++.--.++.+..+.
T Consensus 8 lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~--~~~~pdL~p~~AL~a~kl 82 (116)
T PF09477_consen 8 LLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQ--CHCYPDLEPWAALCAWKL 82 (116)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHT--TS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcc--cCCCccHHHHHHHHHHhh
Confidence 3445566666667788888887766665444555666777888888999988 22222 223333333455566788
Q ss_pred CChhHHHHHHHH
Q 022205 146 GNFPTAIEWLNK 157 (301)
Q Consensus 146 g~~~~A~~~~~~ 157 (301)
|--+++...+.+
T Consensus 83 GL~~~~e~~l~r 94 (116)
T PF09477_consen 83 GLASALESRLTR 94 (116)
T ss_dssp T-HHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 887777777764
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.47 E-value=36 Score=26.44 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCCcCcCCchhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Q 022205 40 DKVLRHGLSILNDPKKRSALGPDVW-TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE 109 (301)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~ 109 (301)
+.++..+..+-.+......+-...- -+-.+...+|++.|.+++|..++++... +|++......+..+-.
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 5566666655544111111111111 2233456789999999999999999998 7776655544444443
No 439
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=69.26 E-value=41 Score=24.40 Aligned_cols=47 Identities=9% Similarity=-0.149 Sum_probs=27.5
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS 122 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 122 (301)
...+.....+.+++.++..++.++..+..+..++... +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3446677777777777766665565666666666543 3344444444
No 440
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.50 E-value=87 Score=27.91 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHH-------HHHHHHHHccc--------------HHHHHHHHHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR-------ELAEIYVSLQM--------------YKQAAFCYEEL 192 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-------~lg~~~~~~~~--------------~~~A~~~~~~a 192 (301)
....+|.+.+..|+|+-|...|+.+.+-.-++ .+|. ..|.+.+..+. ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 45568889999999999999998887765443 2232 23333333331 34444445442
Q ss_pred H----hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 193 I----LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 193 l----~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
- .....-.......+.++...|. +.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~---~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGG---YWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHH
Confidence 1 1111223455666777778888 87877777776655
No 441
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=68.25 E-value=1e+02 Score=28.72 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=51.3
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 022205 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~ 224 (301)
....+.+....+..+.-...+....+.-+..+...+..++|-.+|++.+..+|+ +.++.++.-+++.|- ...|..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~ 95 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL---AKDAQL 95 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh---hhHHHH
Confidence 344455555555544444444555556666677777778888888888877777 556677777777777 777777
Q ss_pred HHH
Q 022205 225 YYA 227 (301)
Q Consensus 225 ~~~ 227 (301)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 666
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.98 E-value=37 Score=23.38 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (301)
+-.+..+|.+|...|+.+.|...|+.--.++|.+...
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 3355666667777777777777666666666665443
No 443
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.64 E-value=78 Score=27.02 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChhHHHHHHHHHH--HhcCCCHHH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--------DPVLHKRRVAIAKAQGNFPTAIEWLNKYL--ETFMADHDA 168 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~ 168 (301)
.....+|.+|...++|..|-..+.-. ..+.. -...+..+|.+|...++..+|..+.+++- ..+..++..
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 35678899999999999988776543 22221 12367788999999999999998888753 334455544
Q ss_pred HHH----HHHHHHHcccHHHHHHHHHHHH
Q 022205 169 WRE----LAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 169 ~~~----lg~~~~~~~~~~~A~~~~~~al 193 (301)
... .|.++-..++|-+|...|-+..
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3455555677766666665554
No 444
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=67.42 E-value=57 Score=28.39 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=56.7
Q ss_pred HHHHhcCCCCcCcCCch-hHHHHH---HHHHHHHhCCChHHHHHHHHHHHHhC-CCc--------hhhHHHHHHHHHHcC
Q 022205 46 GLSILNDPKKRSALGPD-VWTLYE---QVSIAAMDCQCLDVAKDCIKVLQKQF-PES--------KRVGRLEGILLEAKG 112 (301)
Q Consensus 46 ~~~~~~~~~~~~~~~~~-~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~-p~~--------~~~~~~~a~~~~~~~ 112 (301)
...++.+ ..+.++|. .+.+|+ .+-..|++.++++-+...++...... |+. ...++.+|.++....
T Consensus 157 Fn~il~d--R~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~e 234 (413)
T COG5600 157 FNSILND--RSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNE 234 (413)
T ss_pred HHHhcCC--cCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHH
Confidence 3334444 44445563 444443 44567889999998887776554422 222 245688999999999
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 022205 113 LWAEAEKAYSSLLEDNPL 130 (301)
Q Consensus 113 ~~~~A~~~~~~al~~~p~ 130 (301)
++.+|...+..+....|.
T Consensus 235 n~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 235 NFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred hHHHHHHHHHHHHHhChh
Confidence 999999999999988876
No 445
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=67.30 E-value=82 Score=27.13 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 80 LDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 80 ~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
++++...+.++.... |.--...-.++.++... -+|..-..+|.......|+ +.+-.+.+.......-...++.
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa 350 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLA 350 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHH
Confidence 567788888887754 33333333334444332 3566666666666666665 4444555666555555666776
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 154 WLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 154 ~~~~~l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
..+..... -......+...|..+.+.|+.++|...|++++.+.++.....+...
T Consensus 351 ~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 351 MVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 66665543 1223456677899999999999999999999999888776544443
No 446
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=79 Score=26.59 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=94.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCC--------CchhhHHHHHHHHHHcCCHHHHHHHH---HHHHhcC--CCCHHHH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKAY---SSLLEDN--PLDPVLH 135 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~---~~al~~~--p~~~~~~ 135 (301)
.+|.-....+++++|+..+.+++.... ........++.+|...|++..--+.. +.+.... |....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 456667788999999999999887632 22345677888999998875433322 2222211 1112222
Q ss_pred HHHHHHH-HHcCChhHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHcccHHHHHHHHHHHHhh----C--CCCHHH
Q 022205 136 KRRVAIA-KAQGNFPTAIEWLNKYLETFMADHD------AWRELAEIYVSLQMYKQAAFCYEELILS----Q--PTVPLY 202 (301)
Q Consensus 136 ~~l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~ 202 (301)
..+...+ .....++.-+.+++..++.....-. .-..+..++++.|.|.+|+......+.. + |.-..+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 2222111 1224455666666666654332222 2235678888999999999887766521 1 333456
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
+..-..+|....+ ..++...+..|-
T Consensus 168 hllESKvyh~irn---v~KskaSLTaAr 192 (421)
T COG5159 168 HLLESKVYHEIRN---VSKSKASLTAAR 192 (421)
T ss_pred hhhhHHHHHHHHh---hhhhhhHHHHHH
Confidence 6777788888888 777766666543
No 447
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=65.09 E-value=14 Score=19.82 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
..+++|.++.+....++..+.+..++..++-.
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 34556666666655444555666555555433
No 448
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=64.34 E-value=20 Score=19.07 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=8.8
Q ss_pred cHHHHHHHHHHHhcc
Q 022205 218 NILLAKKYYASTIDL 232 (301)
Q Consensus 218 ~~~~A~~~~~~al~~ 232 (301)
+.++|+.+|+++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 466666666666543
No 449
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.18 E-value=19 Score=18.98 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhC
Q 022205 183 KQAAFCYEELILSQ 196 (301)
Q Consensus 183 ~~A~~~~~~al~~~ 196 (301)
+.|..+|++.+...
T Consensus 4 dRAR~IyeR~v~~h 17 (32)
T PF02184_consen 4 DRARSIYERFVLVH 17 (32)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444443
No 450
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=64.10 E-value=70 Score=25.22 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh-HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV-GRLEGILLEAKGLWAEAEKAYSSLLEDN 128 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~al~~~ 128 (301)
....+..+-..++..||++.|-++|--++...+-+.+. |-.=+.++.+.+.-....++++......
T Consensus 40 Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y 106 (199)
T PF04090_consen 40 HLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFY 106 (199)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 44556677778889999999999999999866544443 4444456666655555445555544433
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.01 E-value=52 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=21.3
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 022205 116 EAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158 (301)
Q Consensus 116 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (301)
.+.+.|.-+.. .....+..|...|..+...|++++|..+|+.+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45555554444 22344445555555555555555555555544
No 452
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.72 E-value=1.1e+02 Score=27.25 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+..|-.++.-.|++ +| -.+.++.+|... .+-+..|-+|+..++|.+|+..|-.++.
T Consensus 238 L~GLlR~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 238 LLGLLRMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566678884 44 445666666542 1226789999999999999999988873
No 453
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.65 E-value=1.4e+02 Score=28.09 Aligned_cols=106 Identities=16% Similarity=-0.036 Sum_probs=65.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A 185 (301)
.+..+.|+++.|.+...++ ++..=|..||.+....|++..|.++|.++.... .|-.++...|+-+.-
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHH
Confidence 3456779999987755543 556778999999999999999999999875432 223333344444322
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
...-..+-+....|.. =.+++..|+ ++++++.+...-++
T Consensus 712 ~~la~~~~~~g~~N~A-----F~~~~l~g~---~~~C~~lLi~t~r~ 750 (794)
T KOG0276|consen 712 AVLASLAKKQGKNNLA-----FLAYFLSGD---YEECLELLISTQRL 750 (794)
T ss_pred HHHHHHHHhhcccchH-----HHHHHHcCC---HHHHHHHHHhcCcC
Confidence 2222222222222211 145677888 88888877665443
No 454
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=62.48 E-value=72 Score=29.73 Aligned_cols=78 Identities=14% Similarity=-0.076 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
....+.+...++.-+.-...+....+..+..+-..+..++|-.+|++.+..+|+ ..+...+.-+.+.|-...|...+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 21 EKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344455555554444333344445556666666677777777778877777777 445566666667776666666655
No 455
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=62.40 E-value=1.1e+02 Score=26.92 Aligned_cols=54 Identities=11% Similarity=-0.042 Sum_probs=39.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCc-----hhhHH--HHHHHHHHcCCHHHHHHHHHH
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGR--LEGILLEAKGLWAEAEKAYSS 123 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~--~~a~~~~~~~~~~~A~~~~~~ 123 (301)
.+..++..++|..|..+|..+....+.. ...+. ..|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3557889999999999999999876421 12223 334455667899999999986
No 456
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.29 E-value=48 Score=29.53 Aligned_cols=95 Identities=16% Similarity=0.024 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHcCC----------HHHHHHHHHHHH
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFP-----------ESKRVGRLEGILLEAKGL----------WAEAEKAYSSLL 125 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----------~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al 125 (301)
+...|.+++....|++|+.++-.+-+.|. +.+....-+..||+...+ ...|...|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 34557888889999999988877766553 222233345567777653 334444444443
Q ss_pred h---------cCCCCHH------HHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 126 E---------DNPLDPV------LHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 126 ~---------~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
. ..+..+. .+..-|.+.+++|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 2 2233333 3444588899999999999999987653
No 457
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.28 E-value=20 Score=18.59 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhc
Q 022205 219 ILLAKKYYASTID 231 (301)
Q Consensus 219 ~~~A~~~~~~al~ 231 (301)
..+|..+|+++.+
T Consensus 21 ~~~A~~~~~~Aa~ 33 (36)
T smart00671 21 LEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=62.24 E-value=51 Score=22.96 Aligned_cols=44 Identities=14% Similarity=-0.035 Sum_probs=23.4
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
.-|.+-+..|++..|.+...++-+..+..+..+..-+.+....|
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34555555666666666666665544443444444445444444
No 459
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=61.67 E-value=16 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=6.6
Q ss_pred ccHHHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELI 193 (301)
Q Consensus 180 ~~~~~A~~~~~~al 193 (301)
|+|++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
No 460
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=61.37 E-value=1.1e+02 Score=26.33 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=66.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
+...|+...|...-... + -.+...|.....++...++|++-..+... ..+|-.|.-...++...|+..+|..
T Consensus 187 li~~~~~k~A~kl~k~F-k--v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEF-K--VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHCCCHHHHHHHHHHc-C--CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 34568777776654432 2 23456777888888899999877665432 2345556666778888899999988
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
+..+ -|+ ......|...|+ +.+|....
T Consensus 259 yI~k----~~~-----~~rv~~y~~~~~---~~~A~~~A 285 (319)
T PF04840_consen 259 YIPK----IPD-----EERVEMYLKCGD---YKEAAQEA 285 (319)
T ss_pred HHHh----CCh-----HHHHHHHHHCCC---HHHHHHHH
Confidence 8877 122 235567778888 88886653
No 461
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=61.07 E-value=64 Score=23.75 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=19.3
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
.+|+-++-...++.....+..+|.....+|.+|.+.|+..+|-..+.+|.
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444444444444443333344444444555544444444444444444
No 462
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.05 E-value=34 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=12.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHh
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQ 93 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~ 93 (301)
|...+..||+..|.+.+.++.+.
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455556666666665555444
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.45 E-value=27 Score=25.06 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=14.1
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.+|..+...|++++|..+|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455555555555555555555555544
No 464
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=60.26 E-value=83 Score=24.81 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHhcC
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV-AIAKAQGNFPTAIEWLNKYLETFM 163 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~~p 163 (301)
-......|+++.|-..|--.+...+-+....-.+| .++...+......++++......|
T Consensus 48 Lh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 48 LHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 33455669999999999999987766665444555 455555555555566666555544
No 465
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=59.88 E-value=55 Score=23.46 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
...+|+.+...|+ +++|..+|-+|+...|.
T Consensus 66 qV~lGE~L~~~G~---~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGD---YEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCC---HHHHHHHHHHHHHhCCC
Confidence 4568999999999 99999999999999995
No 466
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=58.42 E-value=1.6e+02 Score=27.45 Aligned_cols=167 Identities=13% Similarity=0.051 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 79 CLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
.-+++.......-...|+++ .+|..+-.++.. -|+.++|+...++-....+ ........+.+
T Consensus 273 ~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~-~~lpi~~~~~l 351 (547)
T PF14929_consen 273 PQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISST-CALPIRLRAHL 351 (547)
T ss_pred cHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCC-ccchHHHHHHH
Confidence 33444444444445555555 555555555532 2788888887777544332 33334444555
Q ss_pred HHHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHH-cCC
Q 022205 142 AKAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL---ILSQPTVPLYHLAYADVLYT-LGG 215 (301)
Q Consensus 142 ~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~la~~~~~-~~~ 215 (301)
....+ ..+.-..+|+.++..+|........+...+.. ...+...++-. +.+.| .+.+|..++.++.+ .++
T Consensus 352 le~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~~ 427 (547)
T PF14929_consen 352 LEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPSR 427 (547)
T ss_pred HHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhcccc
Confidence 55555 56677888999999999877666555555544 33344444422 23343 46678888888888 444
Q ss_pred CCcHHHHHHHHHHH-------hcccCC-CchhHhhhHHHHHHHHHh
Q 022205 216 VDNILLAKKYYAST-------IDLTGG-KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 216 ~~~~~~A~~~~~~a-------l~~~p~-~~~~~~~~l~~~~~~l~~ 253 (301)
++.-.+....+ +..... .+.++|--+.-...++..
T Consensus 428 ---~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~ 470 (547)
T PF14929_consen 428 ---FEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFD 470 (547)
T ss_pred ---ccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhh
Confidence 44333444444 343333 566777766655554443
No 467
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=58.00 E-value=28 Score=22.50 Aligned_cols=14 Identities=14% Similarity=-0.076 Sum_probs=6.4
Q ss_pred ccHHHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELI 193 (301)
Q Consensus 180 ~~~~~A~~~~~~al 193 (301)
|++++|+.+|..++
T Consensus 20 g~y~eA~~lY~~al 33 (75)
T cd02684 20 GDAAAALSLYCSAL 33 (75)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444444
No 468
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=56.91 E-value=68 Score=30.69 Aligned_cols=103 Identities=17% Similarity=0.055 Sum_probs=78.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHH--cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVS--LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
|..++..+++..+.--|..++.+-|.+ .....+.+.++.. .|+|..++.-..-++...|....++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 445566667777766777777777743 3445566666665 5789999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
.+. ++-|++...-.....|. +..+..-+.
T Consensus 140 l~k---~d~a~rdl~i~~~~~p~-~~~~~eif~ 168 (748)
T KOG4151|consen 140 LNK---LDLAVRDLRIVEKMDPS-NVSASEIFE 168 (748)
T ss_pred HHH---HHHHHHHHHHHhcCCCC-cchHHHHHH
Confidence 999 99999998888888895 644444333
No 469
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.31 E-value=1.5e+02 Score=26.38 Aligned_cols=94 Identities=9% Similarity=-0.038 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-------C-CCHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------P-TVPLY 202 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p-~~~~~ 202 (301)
++..+|.-|...|+++.|++.|.++...+... ...|.++-.+-...|+|-.-..+..++...- + -.+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 77788999999999999999999977665443 4567777777778888887777777766531 0 01223
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
...-|.+...+++ ++.|.++|-.+.
T Consensus 232 ~C~agLa~L~lkk---yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKK---YKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhCC
Confidence 4445566667778 999998887654
No 470
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=54.23 E-value=41 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=5.8
Q ss_pred cccHHHHHHHHHHH
Q 022205 179 LQMYKQAAFCYEEL 192 (301)
Q Consensus 179 ~~~~~~A~~~~~~a 192 (301)
.|++++|+.+|..+
T Consensus 18 ~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 18 AGNYEEALELYKEA 31 (69)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444433
No 471
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=53.24 E-value=2.3e+02 Score=27.70 Aligned_cols=136 Identities=9% Similarity=-0.008 Sum_probs=91.1
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE---AKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
++.....+.+|...+...|++++-...-..+...+|-++..|.....-.. ..+...++...|++++. +-..+..|.
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~ 187 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWE 187 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHH
Confidence 55566677777888888999988877777788888988888775544322 23677888888999887 334455555
Q ss_pred HHHHHHH-------HcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 137 RRVAIAK-------AQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 137 ~l~~~~~-------~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
..+.... ..++++....+|.+++..-... ...+..+...|...-.-++-+..+...+...
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 5554443 3456777888888887653222 3344555566666555577777777777653
No 472
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.93 E-value=2.5e+02 Score=27.84 Aligned_cols=163 Identities=15% Similarity=0.013 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhC----CCchhhHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCHH-H----
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPV-L---- 134 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~-~---- 134 (301)
-|..|+..|...|++++|++++....+.. +.....+-..-.++...+.- +-..++-.-.+..+|.... +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46677888999999999999999988843 22222333333344444443 5555555555555554321 0
Q ss_pred --------HHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--------ccHHHHHHH--HHHHHhh
Q 022205 135 --------HKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYVSL--------QMYKQAAFC--YEELILS 195 (301)
Q Consensus 135 --------~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~--------~~~~~A~~~--~~~al~~ 195 (301)
-.....-+......+-++.+++.++..+.. +...+..+...|... ++-+++.+. .++....
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 001112234556677788888888877655 334444455544432 122233333 2222211
Q ss_pred -------CCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 196 -------QPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 196 -------~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
+|.. ...|...+.++.++|+ .++|+..|-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~k---he~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGK---HEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhh---HHHHHHHHHHHhc
Confidence 1211 3456777888888888 7777777766554
No 473
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=51.43 E-value=1.1e+02 Score=28.36 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 149 PTAIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 149 ~~A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
..++.+|.+++.. +..+.--|..+|..+++.+++.+|+.++-.+-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566665543 11223445667777777777777777776654
No 474
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.41 E-value=1.1e+02 Score=23.53 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=11.2
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 022205 109 EAKGLWAEAEKAYSSLLE 126 (301)
Q Consensus 109 ~~~~~~~~A~~~~~~al~ 126 (301)
...|+|+.++..|.++-.
T Consensus 97 i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHcCcHHHHHHHHHHHHH
Confidence 345666666666666655
No 475
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=51.14 E-value=91 Score=22.51 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=64.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
+...+.....+.+++.++..++.++..+..+..+|...+ ..+.+..+... .+.-+ .-..+..+.+.+.+++++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~--~~~yd---~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNK--SNHYD---IEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhc--cccCC---HHHHHHHHHHcCcHHHHHH
Confidence 345578999999999999988888888888888887653 44555665531 11111 2234555566677777776
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.+.+. .....+ +-.+....++ ++.|++++.+
T Consensus 91 l~~k~----~~~~~A---l~~~l~~~~d---~~~a~~~~~~ 121 (140)
T smart00299 91 LYKKD----GNFKDA---IVTLIEHLGN---YEKAIEYFVK 121 (140)
T ss_pred HHHhh----cCHHHH---HHHHHHcccC---HHHHHHHHHh
Confidence 66553 111111 1111223367 8888888775
No 476
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.41 E-value=68 Score=20.82 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=5.3
Q ss_pred ccHHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEEL 192 (301)
Q Consensus 180 ~~~~~A~~~~~~a 192 (301)
|++++|+.+|..+
T Consensus 20 g~y~eAl~~Y~~a 32 (77)
T cd02683 20 GRFQEALVCYQEG 32 (77)
T ss_pred ccHHHHHHHHHHH
Confidence 4444444444433
No 477
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.06 E-value=59 Score=20.01 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
..-....-..+...|++++|.++.....
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444555555555555555443
No 478
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.83 E-value=1.9e+02 Score=25.80 Aligned_cols=101 Identities=13% Similarity=0.007 Sum_probs=54.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV-------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
-+.+.-.|++ +| -.+.++.+|.... +-+..|.+|..+|++.+|+..|-..+-.-...-......+.++-
T Consensus 242 lR~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d 317 (525)
T KOG3677|consen 242 LRMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYD 317 (525)
T ss_pred HHHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHh
Confidence 3455556884 44 3444555554322 33778999999999999999998876432111111222222222
Q ss_pred H-cccHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q 022205 178 S-LQMYKQAAFCYEELILSQPTV--PLYHLAYADV 209 (301)
Q Consensus 178 ~-~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 209 (301)
. .+.++.--....-++...|.. ...+..++++
T Consensus 318 ~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek 352 (525)
T KOG3677|consen 318 MINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEK 352 (525)
T ss_pred hhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHH
Confidence 2 233445555555566666633 2334444444
No 479
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.41 E-value=1.1e+02 Score=27.30 Aligned_cols=93 Identities=17% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCC-----------CHHHHHHHHHHHHHccc----------HHHHHHHHHHHHh
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMA-----------DHDAWRELAEIYVSLQM----------YKQAAFCYEELIL 194 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-----------~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~ 194 (301)
...|.+.+....|++|+.++-.+-+.+.. .+..-..+.+||+...+ ...|.+.|.++.-
T Consensus 167 hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syG 246 (568)
T KOG2561|consen 167 HEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYG 246 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhh
Confidence 34455556666677777666555443322 12233345566666543 3345555554431
Q ss_pred h---------CCCCHH------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 195 S---------QPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 195 ~---------~p~~~~------~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
. .|..|+ .+..-|.+.|..|+ -++|.++++.+..
T Consensus 247 enl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~---~deAye~le~a~~ 295 (568)
T KOG2561|consen 247 ENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQ---RDEAYEALESAHA 295 (568)
T ss_pred hhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHH
Confidence 1 233332 34556889999999 8999999888754
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=49.04 E-value=60 Score=27.97 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCC---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022205 82 VAKDCIKVLQKQFP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (301)
Q Consensus 82 ~A~~~~~~~~~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 130 (301)
+....+..++..-| ..+..|..+|.+....|.++..+..|++|+..+..
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 44445555555555 23445555566665556665566666666554443
No 481
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.75 E-value=46 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
..|.-.-..|+ +++|+.+|.++++.
T Consensus 10 ~~Av~~D~~g~---~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 10 KKAVEADEAGN---YEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 34444556778 88888888887764
No 482
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=48.61 E-value=71 Score=27.84 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhc-CCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETF-MAD--------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
..+-.+|.+.++++-+...++..-..+ |+. ....+.+|.+|+-..++.+|...+..|+...|.
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 345678889999988877776544322 222 246788999999999999999999999988776
No 483
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.51 E-value=51 Score=21.39 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 022205 185 AAFCYEEL 192 (301)
Q Consensus 185 A~~~~~~a 192 (301)
|+.+..+|
T Consensus 6 a~~l~~~A 13 (77)
T cd02683 6 AKEVLKRA 13 (77)
T ss_pred HHHHHHHH
Confidence 34444333
No 484
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.77 E-value=2.9e+02 Score=27.49 Aligned_cols=111 Identities=15% Similarity=0.062 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHH------
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDA------ 168 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~------ 168 (301)
+..++.+|...|++++|++.+.+.... ++.....+...-..+...+.. +-..++-.-.+..+|...--
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 466788899999999999999998873 333344444555555555554 55555556666666543210
Q ss_pred -----HH--HHHHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 022205 169 -----WR--ELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLY 211 (301)
Q Consensus 169 -----~~--~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 211 (301)
-. ..-.-|......+-++.+++.++..+.. +...+..++..|.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 00 1122245566778889999998877654 4455555555544
No 485
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.70 E-value=39 Score=21.92 Aligned_cols=25 Identities=24% Similarity=0.097 Sum_probs=17.5
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
..|.-+-..|+ +++|+.+|..+++.
T Consensus 11 ~~Ave~D~~g~---y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQRDQEGR---YSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHccC---HHHHHHHHHHHHHH
Confidence 34444556777 88888888887765
No 486
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.64 E-value=2.1e+02 Score=25.19 Aligned_cols=54 Identities=11% Similarity=-0.096 Sum_probs=39.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH--HHHcCChhHHHHHHHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLD-----PVLHKRRVAI--AKAQGNFPTAIEWLNK 157 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 157 (301)
.+..++..++|..|...|..++...++. ...+..++.+ +...-++++|...+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557788899999999999999875422 2234444444 4567888999999986
No 487
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.59 E-value=2.5e+02 Score=25.93 Aligned_cols=206 Identities=12% Similarity=0.036 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhH
Q 022205 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
++.|-++...+....++.+.++......+. .....-..-.++.+|+.+.-..+|..|-..+..+.+...-+...+
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-----~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y 340 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIP-----IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFY 340 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHH
Confidence 355666666666555565555554443222 111111233455778888889999999999999988776444444
Q ss_pred HHHH-HHHHHc--------CCHHHHHHHHHHH---Hhc----CCCCHH----------------------HHHHHHHHHH
Q 022205 102 RLEG-ILLEAK--------GLWAEAEKAYSSL---LED----NPLDPV----------------------LHKRRVAIAK 143 (301)
Q Consensus 102 ~~~a-~~~~~~--------~~~~~A~~~~~~a---l~~----~p~~~~----------------------~~~~l~~~~~ 143 (301)
..++ -|++.. |+-+.|-.+++.. +.. .|-+.. .++.++.++.
T Consensus 341 ~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wn 420 (546)
T KOG3783|consen 341 TYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWN 420 (546)
T ss_pred HHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHh
Confidence 4443 333222 3444443333222 222 111110 1222332222
Q ss_pred HcCC--hhHHHHHHHHHHHh----cCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhh---CCCC----HHHHHHHHHH
Q 022205 144 AQGN--FPTAIEWLNKYLET----FMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILS---QPTV----PLYHLAYADV 209 (301)
Q Consensus 144 ~~g~--~~~A~~~~~~~l~~----~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~la~~ 209 (301)
...+ .++.. -++..++. ++++ .--++.+|.++...|+...|..+|..+++. ...+ |.+++.+|..
T Consensus 421 gf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l 499 (546)
T KOG3783|consen 421 GFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALL 499 (546)
T ss_pred hcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 2111 11222 11111111 1221 223567888999999999999999888732 1122 5688999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 210 LYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++..|. ...++.+++.+|-....+
T Consensus 500 ~~~~~g--~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 500 YWDLGG--GLKEARALLLKAREYASD 523 (546)
T ss_pred HHhccc--ChHHHHHHHHHHHhhccc
Confidence 888775 488999999998887654
No 488
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=45.55 E-value=1e+02 Score=22.40 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=16.6
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
+..-+.+.|.++|+++++.+|++..++..+-.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 33444556666666666666666655544433
No 489
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.55 E-value=2e+02 Score=24.80 Aligned_cols=102 Identities=12% Similarity=-0.010 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH---H
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---L 201 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~ 201 (301)
-.+++.+.+..|.+.|+-+.|.+.+.+..+..-.- .-....+|..|....-..+-++.....++...+-. .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 35689999999999999999999998877654221 22345677777776656666666655555443221 1
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.....|.......+ |.+|...|..++.....
T Consensus 183 lKvY~Gly~msvR~---Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRN---FKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHHcccccc
Confidence 23334555566677 99999999888866543
No 490
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=45.35 E-value=2.6e+02 Score=26.07 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESK--RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
...+...+.+.+++.| .|.-|+-.+-.+.+..|... .... -|.+|+..-+.... ..+...|..
T Consensus 256 ~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~----------l~~~AI~sa~~~Y~--n~HvYPYty 323 (618)
T PF05053_consen 256 LAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLE----------LFNEAISSARTYYN--NHHVYPYTY 323 (618)
T ss_dssp HHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHH----------HHHHHHHHHHHHCT--T--SHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHH----------HHHHHHHHHHHHhc--CCcccccee
Confidence 4445556667777765 56677777777777776321 1110 02344443333322 334567788
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
+|-.+.+.+++.+|+..+-.+-.
T Consensus 324 ~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 324 LGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999888776543
No 491
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=45.10 E-value=1.2e+02 Score=21.99 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH----HhhCCCCH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEEL----ILSQPTVP 200 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~a----l~~~p~~~ 200 (301)
....+||..+...|+.+-.+++++-| +.+-|..+
T Consensus 51 isCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 51 ISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred HHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 34567888999999988888887754 44555544
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.06 E-value=1.7e+02 Score=23.80 Aligned_cols=177 Identities=13% Similarity=0.078 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADH-DAWRELAEIYV 177 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~-~~~~~lg~~~~ 177 (301)
+..+|.+..+.|+|++.+.++++++..+|.-.. -...++.+|.. .|....+...+........... .....+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 456789999999999999999999998775432 33444444432 2444455555554444433321 11111111111
Q ss_pred Hc------ccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCC-------CCcHHHHHHHHHHHhcccCC---Cc
Q 022205 178 SL------QMYKQAAFCYEELILSQPTVPL----YHLAYADVLYTLGG-------VDNILLAKKYYASTIDLTGG---KN 237 (301)
Q Consensus 178 ~~------~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~-------~~~~~~A~~~~~~al~~~p~---~~ 237 (301)
.. .-..+.+......+--...++. .+...|..|...-. .+-.+.|...|++|+.+... +.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 10 1122333333333222222322 22333444432211 11247888889888865211 24
Q ss_pred hhHhhhHHHHHHHHHhhhccCCcccccchHHHHHHHHHHHHHHHhh
Q 022205 238 TKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQR 283 (301)
Q Consensus 238 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (301)
-....|+++-+.-+-- + ...+..+....+...+.+.....
T Consensus 164 ~p~rLgl~LN~svF~y--e----i~~~~~~A~~ia~~afd~a~~~l 203 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYY--E----ILNDPEKAIEIAKQAFDEAISEL 203 (236)
T ss_dssp SHHHHHHHHHHHHHHH--H----TSS-HHHHHHHHHHHHHHHHHGG
T ss_pred CcHHHHHHHHHHHHHH--H----HcCChHHHHHHHHHHHHHHHhhh
Confidence 4456677665554321 0 11334555666666666665544
No 493
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.80 E-value=1.2e+02 Score=22.20 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..+|+.+...|+ ++++..++-.|+.+.|.
T Consensus 85 v~lGE~L~~qg~---~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 85 VQLGEELLAQGN---EEEGAEHLANAIVVCGQ 113 (143)
T ss_pred HHhHHHHHHccC---HHHHHHHHHHHHhhcCC
Confidence 457888888888 88888888888888874
No 494
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.42 E-value=1.1e+02 Score=25.77 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=36.3
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL 103 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 103 (301)
..+.|+....|.+........||+++|+.+++++-+.....++-.+.
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34556777777777788899999999999999999887666554443
No 495
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.97 E-value=4.1e+02 Score=27.36 Aligned_cols=57 Identities=14% Similarity=-0.039 Sum_probs=30.6
Q ss_pred HHHHHHHcccHHHHHHHHHHHH----------hhCCCCHHHH---HHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 172 LAEIYVSLQMYKQAAFCYEELI----------LSQPTVPLYH---LAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al----------~~~p~~~~~~---~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
-|.+|...|+.++|+.+|+.+. ++.+.-.... ..++.-+...++ +-+|-+.....+.
T Consensus 958 Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~k---h~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRK---HYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHccc---chhHHHHHHHHhc
Confidence 3555566666666666665543 1223322322 445555666666 6666666655554
No 496
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=41.92 E-value=2.6e+02 Score=25.15 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVS 178 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~ 178 (301)
........+.+.+...+.+.-. .|... .....+...+...|..++++..+..-+. ++|+ ...++.|-+.++.
T Consensus 73 vn~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D-~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 73 VNNVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD-NFSFNLLMDHFLK 150 (429)
T ss_pred HhhcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC-hhhHHHHHHHHhh
Confidence 3333344455666666665432 22221 1233566677788888888888876544 3565 3445567778888
Q ss_pred cccHHHHHHHHHHHHhh
Q 022205 179 LQMYKQAAFCYEELILS 195 (301)
Q Consensus 179 ~~~~~~A~~~~~~al~~ 195 (301)
.|+|..|.++.......
T Consensus 151 ~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQ 167 (429)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 88888888887766544
No 497
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=41.58 E-value=3.2e+02 Score=26.10 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHh--------------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh------
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQ--------------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------ 126 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~--------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------ 126 (301)
|..+|...++.=+++-|.+.|.++... ....|. -.++|.++...|+|.+|...|.+.-.
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 445566666667777777776555431 112222 34678888888999999888865422
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (301)
...+ .-.+.+++-+...|..++-..+.++
T Consensus 667 myTD--lRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 667 MYTD--LRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHH--HHHHHHHHHHhhcCChHHHHHHHHH
Confidence 1111 0123445555555555554444443
No 498
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=40.43 E-value=2.1e+02 Score=23.51 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=81.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHh-CC--CchhhHHHHHHHHHH-cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQ-FP--ESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAK 143 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~-~p--~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 143 (301)
.+|...-+.++|++.+.+.+++... .| -+..-..++..+|-. .|....+...+...-... .....-...+..-|.
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~yr 85 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKEYR 85 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHHHH
Confidence 4566677789999999999999886 44 234444555555543 366666666655532221 111111111111111
Q ss_pred HcCChhHHHHHHHHHHHh-----cCC--CHH----HHHHHHHHHHHc-----c-----cHHHHHHHHHHHHh-----hCC
Q 022205 144 AQGNFPTAIEWLNKYLET-----FMA--DHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----SQP 197 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~-----~p~--~~~----~~~~lg~~~~~~-----~-----~~~~A~~~~~~al~-----~~p 197 (301)
. .=-++-...+..++.+ -|. ++. .+-..|+.|.-. | -.+.|...|+.|+. +.|
T Consensus 86 ~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~p 164 (244)
T smart00101 86 G-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPP 164 (244)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 1 0012223333333332 122 221 122334444322 2 24688899998885 447
Q ss_pred CCHH---HHHHHHHHHHH-cCCCCcHHHHHHHHHHHhc
Q 022205 198 TVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (301)
Q Consensus 198 ~~~~---~~~~la~~~~~-~~~~~~~~~A~~~~~~al~ 231 (301)
.+|. ...+++..|+. +++ .++|....++++.
T Consensus 165 t~PirLgLaLN~SVF~yEI~~~---~~~A~~lAk~afd 199 (244)
T smart00101 165 THPIRLGLALNFSVFYYEILNS---PDRACNLAKQAFD 199 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 7764 33445555554 577 8888766666654
No 499
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.10 E-value=1.3e+02 Score=20.98 Aligned_cols=74 Identities=18% Similarity=0.042 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
...++|..+.+-+.........+...+...+...|+|++|....+.. + .++.--.++.+..+.|--++....+.
T Consensus 19 HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHHHHHHHH
Confidence 34566665554433322223344455566677778888877665554 1 23333334555566666555554443
No 500
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.71 E-value=4e+02 Score=26.58 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCC
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFP 95 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p 95 (301)
-.+.|+.....|.+.+|+..|+.++-.-|
T Consensus 994 kl~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 994 KLQKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 34557777788999999999988887655
Done!