Query 022205
Match_columns 301
No_of_seqs 403 out of 3683
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 100.0 3.4E-29 1.2E-33 200.6 22.1 193 61-258 2-205 (217)
2 3vtx_A MAMA; tetratricopeptide 100.0 5.3E-28 1.8E-32 188.2 22.6 174 62-239 3-176 (184)
3 2h6f_A Protein farnesyltransfe 100.0 2E-27 6.8E-32 205.4 20.0 192 57-252 90-288 (382)
4 2pl2_A Hypothetical conserved 99.9 1E-25 3.5E-30 180.3 22.0 185 35-230 17-212 (217)
5 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-25 1.1E-29 192.3 26.8 192 60-255 131-322 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.6E-25 1.9E-29 190.8 26.3 234 22-259 118-360 (388)
7 2h6f_A Protein farnesyltransfe 99.9 2.8E-25 9.4E-30 192.0 23.9 218 23-253 98-324 (382)
8 4i17_A Hypothetical protein; T 99.9 2.8E-25 9.6E-30 178.8 22.1 181 63-247 6-223 (228)
9 4abn_A Tetratricopeptide repea 99.9 3.1E-25 1E-29 197.8 24.2 195 60-259 98-313 (474)
10 4eqf_A PEX5-related protein; a 99.9 1.5E-25 5E-30 192.8 21.0 212 36-258 78-301 (365)
11 4gyw_A UDP-N-acetylglucosamine 99.9 1.7E-25 5.8E-30 207.4 22.7 174 59-235 4-177 (723)
12 1fch_A Peroxisomal targeting s 99.9 6.5E-24 2.2E-28 182.3 29.1 212 35-258 76-305 (368)
13 3hym_B Cell division cycle pro 99.9 1.2E-23 4E-28 177.7 29.4 236 35-281 68-315 (330)
14 3hym_B Cell division cycle pro 99.9 1.7E-24 6E-29 182.8 23.4 212 36-258 35-256 (330)
15 2q7f_A YRRB protein; TPR, prot 99.9 2.8E-24 9.7E-29 173.8 22.4 202 37-249 37-238 (243)
16 3uq3_A Heat shock protein STI1 99.9 2.3E-24 8E-29 175.7 21.7 190 61-255 2-224 (258)
17 2vq2_A PILW, putative fimbrial 99.9 1.2E-23 3.9E-28 168.0 24.4 190 60-253 4-197 (225)
18 4eqf_A PEX5-related protein; a 99.9 2.2E-24 7.5E-29 185.5 21.6 228 23-253 83-342 (365)
19 3u4t_A TPR repeat-containing p 99.9 5.6E-24 1.9E-28 175.2 22.8 184 65-253 4-191 (272)
20 2ho1_A Type 4 fimbrial biogene 99.9 9.6E-24 3.3E-28 172.0 23.8 192 58-253 30-224 (252)
21 2q7f_A YRRB protein; TPR, prot 99.9 4.2E-24 1.4E-28 172.8 19.3 187 63-253 22-208 (243)
22 3uq3_A Heat shock protein STI1 99.9 1.1E-23 3.8E-28 171.6 21.7 201 35-247 17-256 (258)
23 3qky_A Outer membrane assembly 99.9 1E-23 3.6E-28 173.2 21.6 197 58-258 9-252 (261)
24 1fch_A Peroxisomal targeting s 99.9 9E-23 3.1E-27 175.2 27.4 217 64-285 64-300 (368)
25 3ieg_A DNAJ homolog subfamily 99.9 1.5E-22 5.1E-27 172.6 28.3 173 60-235 33-220 (359)
26 3ieg_A DNAJ homolog subfamily 99.9 5E-22 1.7E-26 169.4 31.5 190 60-253 150-355 (359)
27 3vtx_A MAMA; tetratricopeptide 99.9 2.2E-23 7.5E-28 162.0 20.7 157 95-255 2-158 (184)
28 3cv0_A Peroxisome targeting si 99.9 2.8E-23 9.5E-28 175.2 22.9 212 35-257 33-259 (327)
29 3cv0_A Peroxisome targeting si 99.9 2.5E-23 8.5E-28 175.5 22.4 196 60-258 85-306 (327)
30 2y4t_A DNAJ homolog subfamily 99.9 4.5E-23 1.5E-27 181.9 23.3 193 60-256 22-229 (450)
31 4gyw_A UDP-N-acetylglucosamine 99.9 1.2E-23 4.2E-28 195.0 20.3 160 93-256 4-163 (723)
32 2y4t_A DNAJ homolog subfamily 99.9 6E-22 2.1E-26 174.7 29.3 172 60-234 56-242 (450)
33 2ho1_A Type 4 fimbrial biogene 99.9 5.2E-22 1.8E-26 161.6 26.8 196 35-241 49-246 (252)
34 2xpi_A Anaphase-promoting comp 99.9 6.7E-22 2.3E-26 180.6 29.6 190 60-253 369-565 (597)
35 3as5_A MAMA; tetratricopeptide 99.9 1.2E-22 4.1E-27 157.0 21.0 171 62-235 6-176 (186)
36 3urz_A Uncharacterized protein 99.9 1E-22 3.6E-27 161.7 20.1 168 64-235 4-189 (208)
37 3u4t_A TPR repeat-containing p 99.9 1.1E-22 3.9E-27 167.4 20.8 212 34-253 14-236 (272)
38 3mkr_A Coatomer subunit epsilo 99.9 4.9E-22 1.7E-26 165.9 24.8 185 60-253 61-249 (291)
39 2vq2_A PILW, putative fimbrial 99.9 1.3E-21 4.4E-26 156.0 25.5 196 35-241 20-219 (225)
40 4ga2_A E3 SUMO-protein ligase 99.9 9E-24 3.1E-28 159.0 11.2 146 70-215 3-149 (150)
41 2xpi_A Anaphase-promoting comp 99.9 1.4E-21 4.9E-26 178.4 27.7 240 36-285 318-565 (597)
42 2pzi_A Probable serine/threoni 99.9 3.5E-23 1.2E-27 192.2 17.0 185 59-251 389-581 (681)
43 3mkr_A Coatomer subunit epsilo 99.9 3.2E-21 1.1E-25 161.0 26.6 190 36-239 78-270 (291)
44 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-21 1.8E-25 157.3 27.7 209 38-257 20-265 (275)
45 4i17_A Hypothetical protein; T 99.9 1.6E-21 5.6E-26 156.6 24.0 156 95-254 4-169 (228)
46 3fp2_A TPR repeat-containing p 99.9 2.5E-22 8.5E-27 181.0 19.6 210 37-258 257-482 (537)
47 2gw1_A Mitochondrial precursor 99.9 3.1E-22 1.1E-26 179.2 19.3 208 37-256 251-467 (514)
48 4ga2_A E3 SUMO-protein ligase 99.9 1.4E-23 4.7E-28 158.0 8.2 143 104-250 3-146 (150)
49 2ond_A Cleavage stimulation fa 99.9 1E-20 3.5E-25 159.2 25.2 191 60-253 46-256 (308)
50 3fp2_A TPR repeat-containing p 99.9 2.4E-21 8.3E-26 174.5 22.2 209 38-251 217-431 (537)
51 2gw1_A Mitochondrial precursor 99.9 6.5E-21 2.2E-25 170.5 24.8 220 22-246 254-491 (514)
52 4abn_A Tetratricopeptide repea 99.9 2.2E-21 7.4E-26 172.9 21.3 183 36-229 115-318 (474)
53 2yhc_A BAMD, UPF0169 lipoprote 99.9 4.1E-21 1.4E-25 154.3 20.9 169 64-235 4-216 (225)
54 4gco_A Protein STI-1; structur 99.9 2.6E-21 9.1E-26 141.0 14.6 115 127-245 8-122 (126)
55 2r5s_A Uncharacterized protein 99.9 1.6E-21 5.6E-26 150.5 13.7 164 64-231 6-172 (176)
56 4gco_A Protein STI-1; structur 99.9 3.6E-21 1.2E-25 140.2 14.6 121 90-210 5-125 (126)
57 3qky_A Outer membrane assembly 99.9 1.3E-19 4.3E-24 148.7 24.7 159 92-253 9-200 (261)
58 3qou_A Protein YBBN; thioredox 99.9 1.6E-20 5.4E-25 156.5 18.6 168 61-231 114-283 (287)
59 1ouv_A Conserved hypothetical 99.9 2.1E-19 7.2E-24 148.2 25.2 176 61-250 3-194 (273)
60 2pzi_A Probable serine/threoni 99.9 6.4E-21 2.2E-25 177.0 17.5 195 34-229 402-602 (681)
61 4g1t_A Interferon-induced prot 99.9 8.2E-19 2.8E-23 155.7 29.8 213 37-253 65-296 (472)
62 2vsy_A XCC0866; transferase, g 99.9 1.7E-20 6E-25 170.8 19.3 165 77-245 2-169 (568)
63 3nf1_A KLC 1, kinesin light ch 99.9 1.7E-20 5.8E-25 156.9 17.4 174 57-233 20-225 (311)
64 3gyz_A Chaperone protein IPGC; 99.8 2.3E-21 7.9E-26 145.5 9.0 116 117-235 21-136 (151)
65 3urz_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 147.1 16.3 156 97-255 3-174 (208)
66 1xnf_A Lipoprotein NLPI; TPR, 99.8 8E-21 2.7E-25 156.3 12.9 165 71-240 12-180 (275)
67 2ond_A Cleavage stimulation fa 99.8 9.2E-19 3.1E-23 147.2 25.5 174 59-235 94-273 (308)
68 1qqe_A Vesicular transport pro 99.8 1.5E-19 5.1E-24 151.0 19.7 169 64-235 37-231 (292)
69 4g1t_A Interferon-induced prot 99.8 2.3E-19 7.8E-24 159.3 21.1 238 23-263 156-455 (472)
70 3as5_A MAMA; tetratricopeptide 99.8 1.9E-19 6.6E-24 138.8 18.1 153 97-253 7-159 (186)
71 3dra_A Protein farnesyltransfe 99.8 2.1E-18 7.2E-23 143.8 25.5 219 23-252 34-272 (306)
72 3edt_B KLC 2, kinesin light ch 99.8 1.6E-19 5.6E-24 148.6 18.1 170 60-232 39-281 (283)
73 1ouv_A Conserved hypothetical 99.8 4E-18 1.4E-22 140.6 26.4 191 37-250 20-230 (273)
74 3dss_A Geranylgeranyl transfer 99.8 5.7E-18 1.9E-22 142.0 27.2 219 24-251 32-285 (331)
75 3gyz_A Chaperone protein IPGC; 99.8 2.3E-20 7.8E-25 140.1 10.1 116 85-200 23-138 (151)
76 4a1s_A PINS, partner of inscut 99.8 2E-19 6.7E-24 156.8 17.6 195 61-258 45-283 (411)
77 3nf1_A KLC 1, kinesin light ch 99.8 2.8E-19 9.6E-24 149.4 17.3 198 35-235 39-310 (311)
78 2vgx_A Chaperone SYCD; alterna 99.8 1.2E-19 4E-24 136.0 12.9 129 118-250 7-135 (148)
79 4a1s_A PINS, partner of inscut 99.8 2E-19 6.8E-24 156.8 15.7 218 35-259 60-324 (411)
80 2r5s_A Uncharacterized protein 99.8 1.9E-19 6.7E-24 138.8 13.4 156 95-254 3-160 (176)
81 3sf4_A G-protein-signaling mod 99.8 4E-19 1.4E-23 154.1 16.6 187 65-255 48-284 (406)
82 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.4E-18 4.6E-23 139.5 17.3 156 97-255 3-201 (225)
83 3qou_A Protein YBBN; thioredox 99.8 1.6E-18 5.3E-23 144.4 18.2 158 92-253 111-270 (287)
84 3ulq_A Response regulator aspa 99.8 8.5E-19 2.9E-23 151.8 17.1 165 67-234 106-295 (383)
85 1qqe_A Vesicular transport pro 99.8 8E-19 2.8E-23 146.5 16.3 183 62-246 75-282 (292)
86 3ro2_A PINS homolog, G-protein 99.8 5.9E-19 2E-23 148.6 15.6 245 34-285 16-318 (338)
87 2xcb_A PCRH, regulatory protei 99.8 6E-19 2E-23 131.2 13.3 130 119-252 5-134 (142)
88 2vgx_A Chaperone SYCD; alterna 99.8 2.5E-19 8.5E-24 134.3 11.2 119 85-203 8-126 (148)
89 3sf4_A G-protein-signaling mod 99.8 1.3E-18 4.5E-23 150.8 17.4 193 63-258 8-247 (406)
90 2fo7_A Synthetic consensus TPR 99.8 5.7E-18 2E-22 123.3 18.3 133 100-235 3-135 (136)
91 3dra_A Protein farnesyltransfe 99.8 2.6E-17 8.7E-22 137.2 24.2 216 69-285 37-273 (306)
92 3ro2_A PINS homolog, G-protein 99.8 1.9E-18 6.5E-23 145.5 17.5 193 63-258 4-243 (338)
93 3edt_B KLC 2, kinesin light ch 99.8 4.8E-19 1.7E-23 145.8 12.3 156 75-233 12-199 (283)
94 2fo7_A Synthetic consensus TPR 99.8 1.7E-17 5.8E-22 120.8 18.8 135 65-199 2-136 (136)
95 1p5q_A FKBP52, FK506-binding p 99.8 2.5E-19 8.5E-24 152.6 10.1 154 76-232 125-294 (336)
96 3ulq_A Response regulator aspa 99.8 6.1E-18 2.1E-22 146.4 18.7 219 34-255 114-356 (383)
97 2xcb_A PCRH, regulatory protei 99.8 6.6E-19 2.2E-23 130.9 10.3 124 86-209 6-129 (142)
98 3upv_A Heat shock protein STI1 99.8 1.2E-17 4.1E-22 121.2 15.6 98 133-233 5-102 (126)
99 2ooe_A Cleavage stimulation fa 99.8 4.5E-17 1.5E-21 147.0 23.0 173 60-235 268-457 (530)
100 3upv_A Heat shock protein STI1 99.8 8.9E-18 3E-22 121.9 14.6 119 95-213 1-125 (126)
101 1hh8_A P67PHOX, NCF-2, neutrop 99.8 4.4E-17 1.5E-21 129.0 19.6 130 100-235 8-153 (213)
102 2vsy_A XCC0866; transferase, g 99.8 1.2E-17 4E-22 152.1 18.2 149 59-207 18-169 (568)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.8 2.9E-17 9.9E-22 130.1 17.9 154 63-234 5-174 (213)
104 3u3w_A Transcriptional activat 99.8 2.2E-16 7.5E-21 131.7 23.6 170 62-234 73-268 (293)
105 2e2e_A Formate-dependent nitri 99.8 1.2E-17 4.1E-22 128.7 14.3 122 111-235 23-147 (177)
106 2e2e_A Formate-dependent nitri 99.8 2.6E-17 9E-22 126.7 15.8 133 74-206 20-155 (177)
107 3sz7_A HSC70 cochaperone (SGT) 99.8 5E-17 1.7E-21 123.6 17.1 124 128-255 7-132 (164)
108 3q7a_A Farnesyltransferase alp 99.8 6.1E-16 2.1E-20 130.3 25.1 193 60-253 50-257 (349)
109 1a17_A Serine/threonine protei 99.8 7.3E-17 2.5E-21 122.3 17.7 132 98-232 13-146 (166)
110 2fbn_A 70 kDa peptidylprolyl i 99.8 2.7E-18 9.1E-23 134.9 9.8 146 75-223 15-176 (198)
111 2qfc_A PLCR protein; TPR, HTH, 99.8 1.7E-16 5.7E-21 132.4 21.1 170 62-234 73-268 (293)
112 3q15_A PSP28, response regulat 99.8 3.7E-17 1.3E-21 141.3 17.6 167 66-235 103-293 (378)
113 2c2l_A CHIP, carboxy terminus 99.7 2.3E-17 7.8E-22 136.9 15.0 180 61-249 1-180 (281)
114 1a17_A Serine/threonine protei 99.7 2.4E-16 8.2E-21 119.4 19.5 134 62-195 11-146 (166)
115 1dce_A Protein (RAB geranylger 99.7 2E-18 6.7E-23 156.4 9.0 201 24-235 31-270 (567)
116 3q15_A PSP28, response regulat 99.7 1.2E-16 4E-21 138.1 19.8 220 33-255 111-353 (378)
117 2lni_A Stress-induced-phosphop 99.7 4.7E-17 1.6E-21 118.6 14.8 111 101-211 19-129 (133)
118 2xm6_A Protein corresponding t 99.7 2E-15 6.8E-20 134.9 28.2 173 64-250 219-411 (490)
119 3rjv_A Putative SEL1 repeat pr 99.7 8.1E-17 2.8E-21 127.9 17.0 167 62-234 16-199 (212)
120 2ifu_A Gamma-SNAP; membrane fu 99.7 8.2E-17 2.8E-21 135.3 17.9 168 63-235 35-226 (307)
121 2fbn_A 70 kDa peptidylprolyl i 99.7 6.5E-18 2.2E-22 132.7 10.2 154 100-257 6-175 (198)
122 2vyi_A SGTA protein; chaperone 99.7 8.3E-17 2.8E-21 116.6 15.2 119 97-215 11-129 (131)
123 3sz7_A HSC70 cochaperone (SGT) 99.7 5.7E-17 1.9E-21 123.3 14.7 114 95-208 8-121 (164)
124 2xm6_A Protein corresponding t 99.7 7.7E-15 2.6E-19 131.1 30.3 173 64-250 111-303 (490)
125 1dce_A Protein (RAB geranylger 99.7 3.6E-16 1.2E-20 141.6 21.5 179 74-253 38-241 (567)
126 2vyi_A SGTA protein; chaperone 99.7 2.2E-16 7.7E-21 114.3 16.4 125 58-182 6-130 (131)
127 3e4b_A ALGK; tetratricopeptide 99.7 7.7E-16 2.6E-20 136.3 22.9 173 66-250 178-366 (452)
128 2lni_A Stress-induced-phosphop 99.7 1.3E-16 4.6E-21 116.1 14.9 122 127-252 11-132 (133)
129 3dss_A Geranylgeranyl transfer 99.7 1.2E-15 4E-20 128.0 22.1 172 72-244 37-233 (331)
130 1p5q_A FKBP52, FK506-binding p 99.7 3.2E-16 1.1E-20 133.3 19.0 136 60-195 143-294 (336)
131 3q7a_A Farnesyltransferase alp 99.7 1.1E-15 3.8E-20 128.7 21.8 185 23-215 55-257 (349)
132 2ooe_A Cleavage stimulation fa 99.7 1.5E-15 5.2E-20 137.0 23.9 174 59-235 316-495 (530)
133 1na0_A Designed protein CTPR3; 99.7 7.1E-16 2.4E-20 110.7 17.4 116 98-213 9-124 (125)
134 3q49_B STIP1 homology and U bo 99.7 5E-16 1.7E-20 114.0 16.7 122 127-251 4-129 (137)
135 3rjv_A Putative SEL1 repeat pr 99.7 2.5E-16 8.7E-21 125.1 16.2 158 81-250 3-174 (212)
136 4gcn_A Protein STI-1; structur 99.7 1.8E-16 6.2E-21 115.4 14.1 99 99-197 9-114 (127)
137 4gcn_A Protein STI-1; structur 99.7 1.3E-16 4.6E-21 116.1 12.3 102 131-235 7-115 (127)
138 2hr2_A Hypothetical protein; a 99.7 1.9E-16 6.4E-21 117.8 13.2 114 134-251 13-149 (159)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.4E-17 4.6E-22 147.7 8.3 151 77-230 247-413 (457)
140 1hxi_A PEX5, peroxisome target 99.7 2.6E-16 9E-21 113.5 13.4 99 101-199 20-118 (121)
141 3q49_B STIP1 homology and U bo 99.7 2.9E-16 9.8E-21 115.3 13.9 120 93-212 4-128 (137)
142 3rkv_A Putative peptidylprolyl 99.7 5.7E-16 2E-20 117.5 15.9 119 134-256 13-150 (162)
143 3gw4_A Uncharacterized protein 99.7 2.7E-16 9.2E-21 123.3 14.2 176 74-254 2-196 (203)
144 1elw_A TPR1-domain of HOP; HOP 99.7 1.2E-15 4.3E-20 108.3 16.4 109 100-208 6-114 (118)
145 1na0_A Designed protein CTPR3; 99.7 1.8E-15 6.2E-20 108.5 16.8 120 128-251 4-124 (125)
146 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.1E-17 7.2E-22 146.4 7.8 142 110-255 246-402 (457)
147 1hxi_A PEX5, peroxisome target 99.7 3.1E-16 1.1E-20 113.1 12.6 99 134-235 19-117 (121)
148 1elw_A TPR1-domain of HOP; HOP 99.7 2.4E-15 8.1E-20 106.8 16.4 114 131-248 3-116 (118)
149 1wao_1 Serine/threonine protei 99.7 2.1E-17 7.2E-22 147.1 6.6 136 97-235 5-153 (477)
150 2ifu_A Gamma-SNAP; membrane fu 99.7 3.2E-16 1.1E-20 131.6 12.8 176 77-256 4-213 (307)
151 3rkv_A Putative peptidylprolyl 99.7 4.2E-16 1.4E-20 118.2 12.2 115 100-214 13-146 (162)
152 2dba_A Smooth muscle cell asso 99.7 2.4E-15 8.2E-20 111.6 15.9 115 95-209 25-142 (148)
153 2hr2_A Hypothetical protein; a 99.7 5.5E-16 1.9E-20 115.3 11.3 107 100-206 13-142 (159)
154 2xev_A YBGF; tetratricopeptide 99.7 6E-15 2.1E-19 107.0 16.4 113 100-212 4-122 (129)
155 4f3v_A ESX-1 secretion system 99.7 4.4E-16 1.5E-20 127.1 11.0 197 35-244 18-247 (282)
156 4f3v_A ESX-1 secretion system 99.7 6.6E-16 2.2E-20 126.1 11.4 208 68-298 11-250 (282)
157 2kck_A TPR repeat; tetratricop 99.6 1.9E-15 6.5E-20 106.4 11.8 105 128-235 2-109 (112)
158 2kck_A TPR repeat; tetratricop 99.6 1.9E-15 6.6E-20 106.3 11.8 107 94-200 2-111 (112)
159 2dba_A Smooth muscle cell asso 99.6 7.7E-15 2.6E-19 108.8 15.3 118 126-247 22-142 (148)
160 1elr_A TPR2A-domain of HOP; HO 99.6 7E-15 2.4E-19 106.4 14.1 116 133-253 5-127 (131)
161 1elr_A TPR2A-domain of HOP; HO 99.6 6.1E-15 2.1E-19 106.7 13.8 120 95-215 1-127 (131)
162 1hz4_A MALT regulatory protein 99.6 1.7E-13 5.9E-18 117.7 24.8 216 34-255 25-270 (373)
163 2if4_A ATFKBP42; FKBP-like, al 99.6 3E-16 1E-20 133.6 7.2 153 63-235 178-331 (338)
164 1zu2_A Mitochondrial import re 99.6 3.2E-15 1.1E-19 110.9 11.1 91 111-201 15-126 (158)
165 1wao_1 Serine/threonine protei 99.6 2.5E-16 8.4E-21 140.2 6.0 137 63-199 5-154 (477)
166 2qfc_A PLCR protein; TPR, HTH, 99.6 4.6E-14 1.6E-18 117.6 19.4 156 95-253 72-251 (293)
167 1hz4_A MALT regulatory protein 99.6 4.7E-14 1.6E-18 121.3 19.7 168 64-234 14-205 (373)
168 2xev_A YBGF; tetratricopeptide 99.6 5.2E-14 1.8E-18 102.0 16.8 115 66-180 4-124 (129)
169 2if4_A ATFKBP42; FKBP-like, al 99.6 1.3E-15 4.4E-20 129.7 9.3 103 99-201 231-334 (338)
170 1zu2_A Mitochondrial import re 99.6 3E-15 1E-19 111.1 9.5 99 144-246 14-133 (158)
171 3k9i_A BH0479 protein; putativ 99.6 1.8E-15 6E-20 108.3 7.6 94 111-204 3-99 (117)
172 3e4b_A ALGK; tetratricopeptide 99.6 5.9E-14 2E-18 124.1 18.4 178 63-250 140-330 (452)
173 1ihg_A Cyclophilin 40; ppiase 99.6 1.6E-14 5.5E-19 124.3 14.0 116 100-215 225-356 (370)
174 2c2l_A CHIP, carboxy terminus 99.6 1.2E-13 4.2E-18 114.4 16.9 106 95-200 1-106 (281)
175 1ihg_A Cyclophilin 40; ppiase 99.6 9.3E-14 3.2E-18 119.5 16.0 126 63-188 222-363 (370)
176 3ro3_A PINS homolog, G-protein 99.5 6.9E-14 2.3E-18 104.8 12.4 131 101-234 12-160 (164)
177 3mv2_B Coatomer subunit epsilo 99.5 8.3E-13 2.8E-17 109.2 19.5 164 83-253 85-270 (310)
178 3mv2_B Coatomer subunit epsilo 99.5 6.7E-13 2.3E-17 109.8 18.8 166 64-238 100-287 (310)
179 3u3w_A Transcriptional activat 99.5 3.4E-13 1.2E-17 112.3 17.0 157 35-195 87-266 (293)
180 3ro3_A PINS homolog, G-protein 99.5 1.5E-13 5E-18 103.0 13.4 137 62-198 7-161 (164)
181 3k9i_A BH0479 protein; putativ 99.5 2.5E-14 8.6E-19 102.2 7.9 95 77-171 3-100 (117)
182 3gw4_A Uncharacterized protein 99.5 4.9E-13 1.7E-17 104.5 15.8 135 62-196 24-177 (203)
183 2kat_A Uncharacterized protein 99.5 2.8E-13 9.4E-18 96.3 11.6 102 149-253 2-104 (115)
184 1b89_A Protein (clathrin heavy 99.5 1.9E-14 6.4E-19 124.2 4.5 201 64-295 32-234 (449)
185 1xi4_A Clathrin heavy chain; a 99.5 5.1E-12 1.8E-16 121.3 21.0 172 62-250 1103-1326(1630)
186 1xi4_A Clathrin heavy chain; a 99.5 4.8E-11 1.6E-15 114.7 26.8 160 70-251 1055-1263(1630)
187 4b4t_Q 26S proteasome regulato 99.4 9.7E-12 3.3E-16 108.8 19.4 166 67-235 7-207 (434)
188 2kat_A Uncharacterized protein 99.4 2.4E-12 8.1E-17 91.4 12.2 96 116-211 3-100 (115)
189 1na3_A Designed protein CTPR2; 99.4 2.5E-12 8.4E-17 86.9 11.4 82 132-213 9-90 (91)
190 2l6j_A TPR repeat-containing p 99.4 1.7E-13 5.9E-18 96.4 5.7 83 167-253 5-93 (111)
191 2l6j_A TPR repeat-containing p 99.4 6E-12 2.1E-16 88.3 12.1 95 131-228 3-103 (111)
192 3ma5_A Tetratricopeptide repea 99.4 3.6E-12 1.2E-16 88.2 10.5 88 161-251 2-90 (100)
193 4e6h_A MRNA 3'-END-processing 99.4 1E-10 3.6E-15 107.6 23.1 173 60-235 339-536 (679)
194 1b89_A Protein (clathrin heavy 99.4 1E-12 3.4E-17 113.4 9.2 167 63-251 60-254 (449)
195 1na3_A Designed protein CTPR2; 99.4 8.1E-12 2.8E-16 84.3 11.7 85 96-180 7-91 (91)
196 4b4t_Q 26S proteasome regulato 99.3 3.5E-11 1.2E-15 105.2 16.1 168 63-233 54-246 (434)
197 3ma5_A Tetratricopeptide repea 99.3 1.8E-11 6.1E-16 84.7 10.2 71 127-197 2-72 (100)
198 2kc7_A BFR218_protein; tetratr 99.3 7.2E-12 2.5E-16 86.3 8.1 89 136-235 4-93 (99)
199 2kc7_A BFR218_protein; tetratr 99.3 7.4E-12 2.5E-16 86.2 7.2 90 102-199 4-94 (99)
200 1klx_A Cysteine rich protein B 99.3 1.7E-10 5.8E-15 84.7 13.7 111 112-233 9-127 (138)
201 4e6h_A MRNA 3'-END-processing 99.2 1.2E-09 4E-14 100.6 21.7 173 60-235 374-573 (679)
202 3ly7_A Transcriptional activat 99.2 6.4E-10 2.2E-14 93.6 18.1 145 87-235 183-342 (372)
203 1klx_A Cysteine rich protein B 99.2 2.9E-10 9.9E-15 83.5 14.2 120 78-207 9-136 (138)
204 3ly7_A Transcriptional activat 99.2 1.4E-09 4.9E-14 91.5 17.0 140 60-201 193-345 (372)
205 3n71_A Histone lysine methyltr 99.2 2.3E-10 7.7E-15 101.5 11.6 126 105-233 316-465 (490)
206 3u64_A Protein TP_0956; tetrat 99.1 1.9E-09 6.3E-14 87.3 15.4 106 127-235 147-272 (301)
207 3n71_A Histone lysine methyltr 99.1 6.2E-10 2.1E-14 98.7 12.9 127 70-196 315-465 (490)
208 3bee_A Putative YFRE protein; 99.1 1.4E-09 4.9E-14 73.7 10.8 71 128-198 2-75 (93)
209 3bee_A Putative YFRE protein; 99.0 3.1E-09 1.1E-13 72.0 9.8 71 162-235 2-75 (93)
210 1pc2_A Mitochondria fission pr 99.0 1.2E-08 4.3E-13 74.7 11.8 97 151-251 17-118 (152)
211 1pc2_A Mitochondria fission pr 98.9 2E-08 6.7E-13 73.6 11.9 96 113-208 13-113 (152)
212 2v5f_A Prolyl 4-hydroxylase su 98.9 5.2E-08 1.8E-12 67.6 11.6 78 165-246 4-88 (104)
213 2v5f_A Prolyl 4-hydroxylase su 98.8 5.9E-08 2E-12 67.2 11.2 74 134-207 7-87 (104)
214 2uy1_A Cleavage stimulation fa 98.8 2.1E-06 7.3E-11 76.4 23.7 160 61-229 210-380 (493)
215 3qww_A SET and MYND domain-con 98.8 9.6E-08 3.3E-12 83.4 13.1 94 110-203 310-424 (433)
216 2uy1_A Cleavage stimulation fa 98.7 1.7E-06 5.9E-11 77.0 20.4 160 81-253 196-369 (493)
217 4g26_A Pentatricopeptide repea 98.7 1.6E-05 5.6E-10 70.8 25.3 164 66-232 28-204 (501)
218 3u64_A Protein TP_0956; tetrat 98.7 1.1E-07 3.9E-12 76.9 10.2 107 93-199 147-273 (301)
219 3qwp_A SET and MYND domain-con 98.7 5.7E-08 1.9E-12 84.9 8.7 95 108-202 297-412 (429)
220 3qww_A SET and MYND domain-con 98.6 9.7E-08 3.3E-12 83.3 8.4 87 144-233 310-412 (433)
221 3qwp_A SET and MYND domain-con 98.6 3.5E-07 1.2E-11 79.9 10.8 91 139-232 294-400 (429)
222 1nzn_A CGI-135 protein, fissio 98.4 4.5E-06 1.5E-10 58.9 10.9 88 116-203 19-111 (126)
223 4h7y_A Dual specificity protei 98.4 1.4E-05 4.9E-10 57.6 13.0 120 127-252 8-141 (161)
224 1nzn_A CGI-135 protein, fissio 98.3 1.7E-05 5.7E-10 56.0 11.1 99 148-250 17-120 (126)
225 4g26_A Pentatricopeptide repea 98.1 0.00026 9.1E-09 63.0 18.9 152 101-255 29-192 (501)
226 4h7y_A Dual specificity protei 98.1 6.7E-05 2.3E-09 54.2 11.1 120 94-215 9-142 (161)
227 3ffl_A Anaphase-promoting comp 98.0 0.00013 4.6E-09 53.7 11.1 134 63-210 20-165 (167)
228 3ffl_A Anaphase-promoting comp 97.8 0.00025 8.6E-09 52.3 10.7 116 99-229 21-148 (167)
229 3o48_A Mitochondria fission 1 97.7 0.001 3.6E-08 47.0 11.4 52 150-201 61-113 (134)
230 1y8m_A FIS1; mitochondria, unk 97.6 0.0028 9.7E-08 45.4 13.3 74 165-242 38-115 (144)
231 1y8m_A FIS1; mitochondria, unk 97.6 0.0043 1.5E-07 44.5 14.0 79 129-207 36-118 (144)
232 3o48_A Mitochondria fission 1 97.6 0.0012 4.1E-08 46.7 10.6 83 165-251 39-125 (134)
233 3txn_A 26S proteasome regulato 97.3 0.057 1.9E-06 46.1 19.7 167 64-233 19-211 (394)
234 4gns_B Protein CSD3, chitin bi 97.3 0.0036 1.2E-07 58.0 13.1 112 114-229 265-397 (754)
235 4gns_B Protein CSD3, chitin bi 97.2 0.0031 1.1E-07 58.4 11.9 116 76-192 260-397 (754)
236 3mkq_B Coatomer subunit alpha; 96.9 0.05 1.7E-06 40.7 14.0 99 75-191 16-114 (177)
237 1ya0_A SMG-7 transcript varian 96.9 0.056 1.9E-06 47.7 16.0 81 168-252 154-234 (497)
238 1ya0_A SMG-7 transcript varian 96.5 0.021 7.3E-07 50.4 10.6 78 100-177 154-231 (497)
239 3mkq_B Coatomer subunit alpha; 96.4 0.16 5.5E-06 37.9 13.6 113 96-232 6-118 (177)
240 3mkq_A Coatomer beta'-subunit; 96.4 0.14 4.7E-06 48.0 16.4 98 74-192 609-707 (814)
241 2ff4_A Probable regulatory pro 96.3 0.12 4E-06 44.3 14.0 61 168-231 173-233 (388)
242 1zbp_A Hypothetical protein VP 96.2 0.15 5E-06 40.8 13.2 118 108-235 7-132 (273)
243 3mkq_A Coatomer beta'-subunit; 96.1 0.15 5E-06 47.8 15.2 105 108-228 662-774 (814)
244 2ff4_A Probable regulatory pro 96.1 0.16 5.5E-06 43.4 14.0 109 73-194 124-233 (388)
245 4b4t_P 26S proteasome regulato 96.0 0.7 2.4E-05 40.2 22.8 166 62-232 54-247 (445)
246 4b4t_R RPN7, 26S proteasome re 95.8 0.12 4E-06 45.0 12.1 98 132-232 131-237 (429)
247 3kae_A CDC27, possible protein 95.7 0.41 1.4E-05 35.4 18.6 160 68-235 37-240 (242)
248 1zbp_A Hypothetical protein VP 95.7 0.38 1.3E-05 38.5 13.3 121 72-199 5-133 (273)
249 3kae_A CDC27, possible protein 95.5 0.49 1.7E-05 35.0 20.5 136 64-199 62-241 (242)
250 4b4t_S RPN3, 26S proteasome re 95.4 0.047 1.6E-06 48.1 7.9 126 72-199 144-303 (523)
251 4fhn_B Nucleoporin NUP120; pro 95.4 0.57 2E-05 46.0 16.4 141 70-215 818-986 (1139)
252 3spa_A Mtrpol, DNA-directed RN 95.4 0.24 8.3E-06 47.4 13.0 98 99-196 128-231 (1134)
253 3spa_A Mtrpol, DNA-directed RN 95.3 0.47 1.6E-05 45.5 14.6 99 64-162 127-231 (1134)
254 4b4t_R RPN7, 26S proteasome re 95.3 0.17 5.9E-06 43.9 11.1 100 97-196 130-238 (429)
255 3txn_A 26S proteasome regulato 95.0 0.52 1.8E-05 40.2 12.9 138 78-215 73-235 (394)
256 4b4t_S RPN3, 26S proteasome re 94.8 0.081 2.8E-06 46.6 7.5 128 103-235 141-302 (523)
257 4b4t_P 26S proteasome regulato 94.3 2.4 8.2E-05 36.8 20.1 98 98-195 137-247 (445)
258 1qsa_A Protein (soluble lytic 91.9 7.2 0.00025 35.4 21.6 138 105-253 221-362 (618)
259 4fhn_B Nucleoporin NUP120; pro 91.0 1.3 4.5E-05 43.5 10.5 116 105-227 819-962 (1139)
260 1qsa_A Protein (soluble lytic 90.2 11 0.00036 34.3 20.9 160 62-227 250-437 (618)
261 4gq2_M Nucleoporin NUP120; bet 89.2 5.8 0.0002 38.2 13.1 35 167-201 898-933 (950)
262 2wpv_A GET4, UPF0363 protein Y 84.3 16 0.00054 29.9 13.4 118 73-190 22-158 (312)
263 4gq2_M Nucleoporin NUP120; bet 84.1 31 0.001 33.2 14.9 105 139-250 817-948 (950)
264 1wy6_A Hypothetical protein ST 81.0 12 0.0004 26.7 7.9 56 140-195 99-154 (172)
265 3ax2_A Mitochondrial import re 78.5 7.2 0.00025 24.2 5.6 29 171-199 22-50 (73)
266 1wy6_A Hypothetical protein ST 78.4 16 0.00054 26.1 14.8 139 71-233 14-155 (172)
267 4ady_A RPN2, 26S proteasome re 78.4 46 0.0016 31.9 13.5 122 68-193 459-587 (963)
268 2wpv_A GET4, UPF0363 protein Y 75.7 32 0.0011 28.2 16.0 27 130-156 132-158 (312)
269 4ady_A RPN2, 26S proteasome re 75.6 37 0.0013 32.5 12.1 160 64-231 413-588 (963)
270 3t5v_B Nuclear mRNA export pro 75.6 13 0.00043 32.4 8.4 64 136-199 180-254 (455)
271 2ijq_A Hypothetical protein; s 73.7 22 0.00074 25.9 8.0 57 138-194 38-103 (161)
272 2ijq_A Hypothetical protein; s 73.6 24 0.00081 25.7 8.5 60 102-161 36-104 (161)
273 3esl_A Checkpoint serine/threo 72.4 29 0.001 26.3 13.0 100 62-162 31-145 (202)
274 2crb_A Nuclear receptor bindin 71.1 8.4 0.00029 25.0 4.6 26 168-193 17-42 (97)
275 1om2_A Protein (mitochondrial 71.0 13 0.00046 24.3 5.7 29 204-235 24-52 (95)
276 3t5v_B Nuclear mRNA export pro 70.9 16 0.00053 31.8 7.9 70 62-131 171-254 (455)
277 2w2u_A Hypothetical P60 katani 70.8 7.5 0.00026 24.8 4.5 16 178-193 31-46 (83)
278 3ax2_A Mitochondrial import re 69.5 15 0.00052 22.7 5.5 28 138-165 23-50 (73)
279 2v6y_A AAA family ATPase, P60 69.3 8.3 0.00028 24.6 4.5 15 179-193 24-38 (83)
280 3t5x_A PCI domain-containing p 68.6 14 0.00048 28.1 6.4 91 133-231 15-110 (203)
281 3t5x_A PCI domain-containing p 67.3 15 0.00052 27.9 6.4 33 100-132 16-48 (203)
282 3lpz_A GET4 (YOR164C homolog); 65.9 56 0.0019 27.0 16.5 64 164-230 134-214 (336)
283 4aez_C MAD3, mitotic spindle c 64.9 28 0.00095 26.9 7.3 74 152-234 97-181 (223)
284 2crb_A Nuclear receptor bindin 64.6 15 0.00051 23.8 4.8 31 62-92 13-43 (97)
285 1om2_A Protein (mitochondrial 64.1 11 0.00038 24.7 4.2 28 171-198 25-52 (95)
286 4aez_C MAD3, mitotic spindle c 63.5 49 0.0017 25.5 10.1 31 166-196 150-180 (223)
287 2wvi_A Mitotic checkpoint seri 62.5 43 0.0015 24.5 10.9 74 152-234 43-127 (164)
288 3re2_A Predicted protein; meni 61.9 44 0.0015 28.0 8.2 64 131-194 254-324 (472)
289 2cwy_A Hypothetical protein TT 59.5 34 0.0011 22.3 6.6 24 105-128 8-31 (94)
290 2p58_C Putative type III secre 56.6 41 0.0014 22.4 10.1 86 66-157 9-94 (116)
291 3lpz_A GET4 (YOR164C homolog); 55.2 88 0.003 25.8 22.4 123 129-251 133-295 (336)
292 2uwj_G Type III export protein 55.1 43 0.0015 22.2 9.4 85 67-157 9-93 (115)
293 3u84_A Menin; MLL, JUND, ledgf 52.2 74 0.0025 27.2 8.2 43 151-193 298-345 (550)
294 2cwy_A Hypothetical protein TT 52.1 46 0.0016 21.6 5.8 54 173-231 8-67 (94)
295 3bqo_A Telomeric repeat-bindin 52.1 74 0.0025 24.0 8.4 63 81-143 95-162 (211)
296 3re2_A Predicted protein; meni 51.8 1.1E+02 0.0036 25.7 10.6 86 63-160 234-324 (472)
297 3u84_A Menin; MLL, JUND, ledgf 51.1 1.2E+02 0.004 26.0 10.6 87 62-160 255-346 (550)
298 3esl_A Checkpoint serine/threo 50.3 80 0.0027 23.9 17.1 79 153-235 58-147 (202)
299 4gq4_A Menin; tumor suppressor 49.9 86 0.0029 26.8 8.2 76 132-207 262-350 (489)
300 3ph0_C ASCG; type III secretio 45.9 43 0.0015 19.5 6.6 50 69-118 11-60 (61)
301 2rpa_A Katanin P60 ATPase-cont 45.7 21 0.00073 22.4 3.2 24 170-193 16-39 (78)
302 4a1g_A Mitotic checkpoint seri 44.8 84 0.0029 22.5 11.1 75 151-234 47-132 (152)
303 2cfu_A SDSA1; SDS-hydrolase, l 44.2 59 0.002 29.7 7.2 49 167-215 450-498 (658)
304 3bqo_A Telomeric repeat-bindin 41.3 38 0.0013 25.6 4.4 39 69-107 122-160 (211)
305 2rpa_A Katanin P60 ATPase-cont 38.9 30 0.001 21.7 3.1 27 203-232 15-41 (78)
306 1wfd_A Hypothetical protein 15 38.9 77 0.0026 20.4 5.8 13 149-161 13-25 (93)
307 2cfu_A SDSA1; SDS-hydrolase, l 38.7 81 0.0028 28.8 7.2 48 134-181 451-498 (658)
308 2w2u_A Hypothetical P60 katani 38.1 41 0.0014 21.3 3.8 22 208-232 27-48 (83)
309 4gq4_A Menin; tumor suppressor 37.5 2E+02 0.0067 24.7 9.8 88 63-160 241-331 (489)
310 3myv_A SUSD superfamily protei 37.5 92 0.0031 26.8 7.2 46 149-194 165-218 (454)
311 3bu8_A Telomeric repeat-bindin 37.4 47 0.0016 25.5 4.4 45 105-149 121-165 (235)
312 4a5x_A MITD1, MIT domain-conta 37.3 65 0.0022 20.5 4.6 15 179-193 29-43 (86)
313 4a1g_A Mitotic checkpoint seri 36.0 1.2E+02 0.0041 21.7 11.5 46 117-162 84-131 (152)
314 2v6y_A AAA family ATPase, P60 35.9 47 0.0016 21.0 3.8 20 210-232 21-40 (83)
315 3kez_A Putative sugar binding 35.7 98 0.0033 26.7 7.0 45 150-194 172-224 (461)
316 3bu8_A Telomeric repeat-bindin 35.4 1.5E+02 0.0051 22.7 13.3 45 137-181 119-163 (235)
317 2dl1_A Spartin; SPG20, MIT, st 34.2 29 0.001 23.6 2.6 18 180-197 17-34 (116)
318 3lew_A SUSD-like carbohydrate 32.6 1.2E+02 0.0041 26.5 7.1 30 166-195 203-232 (495)
319 3myv_A SUSD superfamily protei 32.0 1.2E+02 0.004 26.1 6.9 29 98-126 190-218 (454)
320 2v6x_A Vacuolar protein sortin 31.4 89 0.0031 19.6 4.6 13 180-192 27-39 (85)
321 3mcx_A SUSD superfamily protei 30.7 1.1E+02 0.0038 26.5 6.6 47 149-195 177-231 (477)
322 4b4t_O 26S proteasome regulato 30.7 2.4E+02 0.0082 23.7 11.3 90 105-194 83-197 (393)
323 4abx_A DNA repair protein RECN 30.5 83 0.0028 23.0 5.0 49 184-235 74-122 (175)
324 3lew_A SUSD-like carbohydrate 28.8 1.5E+02 0.0052 25.8 7.2 29 99-127 204-232 (495)
325 3kez_A Putative sugar binding 28.0 1.3E+02 0.0045 25.9 6.6 30 98-127 196-225 (461)
326 2npu_A FKBP12-rapamycin comple 26.9 1.6E+02 0.0054 20.3 6.4 56 69-127 45-103 (126)
327 2cpt_A SKD1 protein, vacuolar 26.7 1.1E+02 0.0036 20.9 4.5 12 149-160 16-27 (117)
328 3mcx_A SUSD superfamily protei 25.4 1.4E+02 0.0048 25.8 6.3 30 98-127 202-231 (477)
329 2qx5_A Nucleoporin NIC96; mRNA 22.7 4.4E+02 0.015 24.1 9.1 21 104-124 449-469 (661)
330 3pmr_A Amyloid-like protein 1; 22.5 2.4E+02 0.0081 21.6 6.0 53 180-235 106-160 (219)
331 3qnk_A Putative lipoprotein; a 21.5 2.4E+02 0.0081 24.7 7.0 30 166-195 182-211 (517)
332 3hdx_A SUSD homolog, SUSD supe 21.2 2.4E+02 0.0084 24.3 7.0 30 98-127 197-226 (478)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=3.4e-29 Score=200.57 Aligned_cols=193 Identities=12% Similarity=-0.006 Sum_probs=179.2
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
|.++.++..+|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 141 IAKAQ-----------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 141 ~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
++... |++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 210 LYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
+...|+ +++|+..|+++++++|+ +..+++.++.++..+++..++.
T Consensus 161 ~~~~g~---~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 161 YLSMGR---LDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHH
Confidence 999999 99999999999999996 9999999999999988865543
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.96 E-value=5.3e-28 Score=188.19 Aligned_cols=174 Identities=17% Similarity=0.056 Sum_probs=168.9
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
+...+|.++|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++..+|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
+...++++.|+..+.+++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++..+|+ +++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL---RDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcccCCCchh
Q 022205 222 AKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 222 A~~~~~~al~~~p~~~~~ 239 (301)
|+.+|+++++++|+ +.+
T Consensus 160 A~~~~~~al~~~p~-~a~ 176 (184)
T 3vtx_A 160 AVKYFKKALEKEEK-KAK 176 (184)
T ss_dssp HHHHHHHHHHTTHH-HHH
T ss_pred HHHHHHHHHhCCcc-CHH
Confidence 99999999999995 543
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2e-27 Score=205.41 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=182.5
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHH
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLH 135 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 135 (301)
..++|....++..++.++...|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|++++..+|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 356888999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cC
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG 214 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~ 214 (301)
..+|.++...|++++|+..|+++++++|+++.+|+++|.++...|++++|+.+|++++.++|++..+|.++|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 55
Q ss_pred CCCcHHHH-----HHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 215 GVDNILLA-----KKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 215 ~~~~~~~A-----~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
. +++| +.+|++++.++|+ +..+|++++.++...+
T Consensus 250 ~---~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 250 Y---NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG 288 (382)
T ss_dssp S---CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC
T ss_pred c---chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccC
Confidence 5 4777 5999999999996 9999999998887754
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1e-25 Score=180.31 Aligned_cols=185 Identities=19% Similarity=0.089 Sum_probs=163.2
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--- 111 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--- 111 (301)
..++.++++......+.. +|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...
T Consensus 17 ~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKE-------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HTTCHHHHHHHHHHHHTT-------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 456677788777777766 8889999999999999999999999999999999999999999999999999
Q ss_pred --------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 112 --------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 112 --------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+ +++.+++.+|.++...|+++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
+|+..|++++.++|+++.++..+|.++...|+ +++|+..|+++-
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence 99999999999999999999999999999999 999999998753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-25 Score=192.29 Aligned_cols=192 Identities=17% Similarity=0.120 Sum_probs=128.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+|+...++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 210 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ +
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~ 287 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS---V 287 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC---H
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---H
Confidence 6666666666666666666666666666666667777667777777777777776666666666667777766666 7
Q ss_pred HHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 220 LLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
++|+..|+++++++|+ +..++..++.++...++..
T Consensus 288 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHH
Confidence 7777777777766664 6666666666666555543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=5.6e-25 Score=190.83 Aligned_cols=234 Identities=15% Similarity=0.058 Sum_probs=197.8
Q ss_pred ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCC---------cCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---------RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (301)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (301)
..|...+.......+........++......+.. ....+|....++..+|.++...|++++|+..+++++.
T Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566666666555554444333333332221110 1122677888999999999999999999999999999
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (301)
.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 277 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+..|+++++++|+ +..+++.++.++...+
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999 99999999999999996 8889999999998888
Q ss_pred hhhccCC
Q 022205 253 QLTKGRN 259 (301)
Q Consensus 253 ~~~~~~~ 259 (301)
+..++..
T Consensus 354 ~~~~A~~ 360 (388)
T 1w3b_A 354 KLQEALM 360 (388)
T ss_dssp CCHHHHH
T ss_pred CHHHHHH
Confidence 7665443
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=2.8e-25 Score=192.00 Aligned_cols=218 Identities=10% Similarity=0.089 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHhCCCchhhH
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
.+|..+..+.. ..++.+.++......+.. +|.+..+|..+|.++...|+ +++|+.++++++..+|++..+|
T Consensus 98 ~a~~~lg~~~~-~~g~~~~Al~~~~~al~l-------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 98 DVYDYFRAVLQ-RDERSERAFKLTRDAIEL-------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp HHHHHHHHHHH-HTCCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHH-HCCChHHHHHHHHHHHHh-------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 35555554443 446677888888877765 88999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cc
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQ 180 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~~ 180 (301)
..+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred cHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 181 MYKQA-----AFCYEELILSQPTVPLYHLAYADVLYTLG--GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 181 ~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.+++| +.+|++++.++|++..+|..+|.++...| + +++|+..+.++ +.+|+ +..++..++.++..+++
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~---~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK---YPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG---CHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc---hHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhc
Confidence 55777 59999999999999999999999999988 6 89999999998 88996 99999999999999874
No 8
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.94 E-value=2.8e-25 Score=178.78 Aligned_cols=181 Identities=11% Similarity=-0.007 Sum_probs=170.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
++..+..+|.+++..|++++|+..|++++...| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 347888999999999999999999999999998 8889999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT 212 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 212 (301)
+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+.+|+++++++|+ ++.++..+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999999998 66999999999999999999999999999999 99999999999999
Q ss_pred cCCCCcH---------------------------HHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205 213 LGGVDNI---------------------------LLAKKYYASTIDLTGGKNTKALFGICLC 247 (301)
Q Consensus 213 ~~~~~~~---------------------------~~A~~~~~~al~~~p~~~~~~~~~l~~~ 247 (301)
.|+ . ++|+.+|+++++++|+ +..+...++.+
T Consensus 166 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 166 NGA---DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHH---HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHH---HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 998 7 9999999999999996 77766655543
No 9
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.94 E-value=3.1e-25 Score=197.76 Aligned_cols=195 Identities=15% Similarity=0.017 Sum_probs=187.3
Q ss_pred CchhHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.|....++..+|.++...|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+ ..++..+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 176 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL 176 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence 667888999999999999999 99999999999999999999999999999999999999999999999999 7999999
Q ss_pred HHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHhhCC---C
Q 022205 139 VAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL--------QMYKQAAFCYEELILSQP---T 198 (301)
Q Consensus 139 ~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~ 198 (301)
|.++... |++++|+..|+++++.+|+++.+|+.+|.++... |++++|+.+|++++.++| .
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 9999999 9999999999999999999999999999999999 999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCC
Q 022205 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRN 259 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~ 259 (301)
++.++.++|.++...|+ +++|+.+|+++++++|+ +..++..++.++..+++..++..
T Consensus 257 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 257 NPDLHLNRATLHKYEES---YGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999996 99999999999999998665443
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=1.5e-25 Score=192.83 Aligned_cols=212 Identities=9% Similarity=0.040 Sum_probs=172.5
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
.++.+.++......+.. +|....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|+++
T Consensus 78 ~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQ-------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 34555666666655544 56677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHH----------HHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHH
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRR----------VAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~ 183 (301)
+|+..|++++..+|++..++..+ |.++...|++++|+..|++++..+|. ++.++..+|.++...|+++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 88888888888777765555444 77888888888888888888888888 8999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
+|+.+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++|+ +..+++.++.++..+++..++.
T Consensus 231 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDR---SEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999 99999999999999996 8999999999999998755543
No 11
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.94 E-value=1.7e-25 Score=207.38 Aligned_cols=174 Identities=14% Similarity=0.065 Sum_probs=169.3
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
..|++..++.++|.++...|++++|+.+|+++++.+|++..++..+|.++..+|++++|+..|+++++.+|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 218 (301)
|.++..+|++++|+..|+++++++|+++.+|+++|.++...|++++|+.+|+++++++|+++.++.++|.++..+|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--- 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--- 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 022205 219 ILLAKKYYASTIDLTGG 235 (301)
Q Consensus 219 ~~~A~~~~~~al~~~p~ 235 (301)
+++|.+.|++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999998764
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=6.5e-24 Score=182.34 Aligned_cols=212 Identities=11% Similarity=0.074 Sum_probs=137.9
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (301)
..++.+.++......+.. +|....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++
T Consensus 76 ~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQ-------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HTTCHHHHHHHHHHHHHS-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 344566666666666544 6667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHH----------------HHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 022205 115 AEAEKAYSSLLEDNPLDPVLHK----------------RRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIY 176 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~ 176 (301)
++|+..+++++..+|.+...+. .++.++ ..|++++|+..|+++++.+|. ++.++..+|.++
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~ 227 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 227 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence 8888888777776666544332 233333 455555555555555555555 555566666666
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++|+ +..+++.++.++..+++..+
T Consensus 228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---SEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666666666666666666666666666 66666666666666653 55566666666665555444
Q ss_pred cC
Q 022205 257 GR 258 (301)
Q Consensus 257 ~~ 258 (301)
+.
T Consensus 304 A~ 305 (368)
T 1fch_A 304 AV 305 (368)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-23 Score=177.70 Aligned_cols=236 Identities=10% Similarity=-0.041 Sum_probs=181.7
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 113 (301)
..++.+.++......+.. +|....++..+|.++...| ++++|+.++++++...|.++.++..+|.++...|+
T Consensus 68 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDL-------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHTCHHHHHHHHHHHHHH-------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred HhhhHHHHHHHHHHHHHh-------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 345667777777776654 5666777888888888888 88888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
+++|+..|++++...|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhC---------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc
Q 022205 194 LSQ---------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE 264 (301)
Q Consensus 194 ~~~---------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 264 (301)
... |..+.++..+|.++...|+ +++|+.+|+++++++|+ +..+++.++.++..+++..++.....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 775 5666788888888888888 88888888888888885 7888888888888888766544333222
Q ss_pred --chHHHHHHHHHHHHHHH
Q 022205 265 --SPELQSLAAAALEKDYK 281 (301)
Q Consensus 265 --~~~~~~~~~~~l~~~~~ 281 (301)
..+-...+...+...+.
T Consensus 297 l~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 297 LGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TTTCSCCHHHHHHHHHHHH
T ss_pred HccCCCchHHHHHHHHHHH
Confidence 11112334455555553
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=182.79 Aligned_cols=212 Identities=9% Similarity=-0.042 Sum_probs=179.5
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LW 114 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~ 114 (301)
.++.+.++.....++.. +|..+..+..++.++...|++++|+..+++++..+|+++.++..+|.++...| ++
T Consensus 35 ~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEK-------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred cCCHHHHHHHHHHHHHc-------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 36777788777777755 55666667777788888889999999999988888888888888898888888 88
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88999999998888888888888999999999999999999999988888888888889999889999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---------CCCchhHhhhHHHHHHHHHhhhccC
Q 022205 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---------GGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
.+|+++.++..+|.++...|+ +++|+.+|+++++.. | ....+++.++.++...++..++.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNEVTVD-KWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCSCTTT-TCCHHHHHHHHHHHHTTCHHHHH
T ss_pred hCCCChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccccccc-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888888889999998888 999999999888876 4 36778888888888887766544
No 15
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=2.8e-24 Score=173.84 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=175.8
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (301)
++.+.++......+.. +|....++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++
T Consensus 37 ~~~~~A~~~~~~~l~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEE-------NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----CCTTHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence 3444444444444543 667788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
|+++.++..+|.++...|+ +++|+.+|+++++++|+ +..+++.++.+..
T Consensus 190 ~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 190 PGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPD-HMLALHAKKLLGH 238 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTT-CHHHHHHHTC---
T ss_pred cccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcc-hHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999996 8888877765443
No 16
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=175.67 Aligned_cols=190 Identities=14% Similarity=0.031 Sum_probs=178.4
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------PV 133 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 133 (301)
+..+..+..+|.+++..|++++|+.+++++++.+ .++.++..+|.++...|++++|+..+++++..+|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4567789999999999999999999999999999 889999999999999999999999999999988876 78
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH--------------------------hcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLE--------------------------TFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--------------------------~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
++..+|.++...|++++|+..|++++. .+|.++.++..+|.++...|++++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999 667778899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhh
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~ 255 (301)
+|++++..+|.++.++..+|.++...|+ +++|+.+|+++++.+|+ +..+++.++.++..+++..
T Consensus 161 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 161 AYTEMIKRAPEDARGYSNRAAALAKLMS---FPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999 99999999999999996 9999999999999988633
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=1.2e-23 Score=167.99 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=179.1
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|..+.++..+|..++..|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205 140 AIAKAQ-GNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 140 ~~~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 216 (301)
.++... |++++|+..++++++ .+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~- 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ- 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC-
Confidence 999999 999999999999999 6677789999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcccC-CCchhHhhhHHHHHHHHHh
Q 022205 217 DNILLAKKYYASTIDLTG-GKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 217 ~~~~~A~~~~~~al~~~p-~~~~~~~~~l~~~~~~l~~ 253 (301)
+++|..+|+++++.+| . +...++.++.++...++
T Consensus 163 --~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 163 --LGDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGN 197 (225)
T ss_dssp --HHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCc
Confidence 9999999999999999 6 77777777766666554
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.2e-24 Score=185.47 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=188.5
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCC---------cCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKK---------RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ 93 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 93 (301)
.|..+++......+.+......++......+.. ...++|....++..+|.++...|++++|+.++++++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 83 VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 455555555555555554444444443322111 12236778889999999999999999999999999999
Q ss_pred CCCchhhHHHH----------HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 94 FPESKRVGRLE----------GILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 94 ~p~~~~~~~~~----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
.|++..++..+ |.++...|++++|+..|++++..+|. ++.++..+|.++...|++++|+..|+++++.
T Consensus 163 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 163 NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99877776655 89999999999999999999999999 8999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----
Q 022205 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K---- 236 (301)
Q Consensus 162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~---- 236 (301)
+|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+|.++...|+ +++|+.+|+++++++|+ .
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999 99999999999999985 1
Q ss_pred ------chhHhhhHHHHHHHHHh
Q 022205 237 ------NTKALFGICLCSSAIAQ 253 (301)
Q Consensus 237 ------~~~~~~~l~~~~~~l~~ 253 (301)
....|..++.++..+++
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp -------CHHHHHHHHHHHHHTC
T ss_pred cchhhhHHHHHHHHHHHHHHcCc
Confidence 26778888888888876
No 19
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=5.6e-24 Score=175.21 Aligned_cols=184 Identities=10% Similarity=0.029 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVA 140 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~ 140 (301)
..+...|.+++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999 4444 345899999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|...+..++ ++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~---~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE---YV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999955555668 99
Q ss_pred HHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 221 LAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+|+..|+++++++|+ +..+++.++.++..+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCc
Confidence 999999999999996 89999999999998876
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=9.6e-24 Score=171.96 Aligned_cols=192 Identities=16% Similarity=0.154 Sum_probs=182.8
Q ss_pred cCCchh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 58 ALGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 58 ~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
..+|.. ..++..+|..+...|++++|+.++++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 446665 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
.+|.++...|++++|+.++++++. .+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 888889999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+ +++|+.+|+++++.+|. +..+++.++.++...++
T Consensus 190 ~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 190 E---YVPARQYYDLFAQGGGQ-NARSLLLGIRLAKVFED 224 (252)
T ss_dssp C---HHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTC
T ss_pred C---HHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHccC
Confidence 9 99999999999999995 88899999988887765
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=4.2e-24 Score=172.81 Aligned_cols=187 Identities=13% Similarity=0.023 Sum_probs=163.3
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+..+|..++..|++++|+.++++++...|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A 222 (301)
...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|+++.++..+|.++...|+ +++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM---LDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 223 KKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 223 ~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+..|++++..+|+ +..+++.++.++...++
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 208 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKEN 208 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccC
Confidence 9999999999996 89999999999988876
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=171.64 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=179.6
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-------hhhHHHHHHH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGIL 107 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~ 107 (301)
..++.+.++......+.. + ....++..+|.++...|++++|+.++++++...|++ +.++..+|.+
T Consensus 17 ~~~~~~~A~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWEL-------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH-------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh-------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 345667777776666654 2 345678889999999999999999999999988865 6889999999
Q ss_pred HHHcCCHHHHHHHHHHHHh--------------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 108 LEAKGLWAEAEKAYSSLLE--------------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
+...|++++|+..|++++. .+|.++.++..+|.++...|++++|+..|++++..
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999999999999999 67777889999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc------CC
Q 022205 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT------GG 235 (301)
Q Consensus 162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~------p~ 235 (301)
+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++ |+
T Consensus 169 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~p~ 245 (258)
T 3uq3_A 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDAEVNNGSS 245 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhChhhcCCCc
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999 74
Q ss_pred CchhHhhhHHHH
Q 022205 236 KNTKALFGICLC 247 (301)
Q Consensus 236 ~~~~~~~~l~~~ 247 (301)
+..++..+..|
T Consensus 246 -~~~~~~~l~~~ 256 (258)
T 3uq3_A 246 -AREIDQLYYKA 256 (258)
T ss_dssp -HHHHHHHHHHT
T ss_pred -hHHHHHHHHHh
Confidence 66666665543
No 23
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.92 E-value=1e-23 Score=173.17 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=176.6
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--- 131 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 131 (301)
.+.|..+..++.+|..++..|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3466778899999999999999999999999999999988 8899999999999999999999999999998855
Q ss_pred HHHHHHHHHHHHH--------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccHHHHH
Q 022205 132 PVLHKRRVAIAKA--------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA 186 (301)
Q Consensus 132 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~~~A~ 186 (301)
+.+++.+|.++.. .|++++|+..|+++++.+|+++.++ +.+|.+|...|++++|+
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5689999999999 9999999999999999999986665 88899999999999999
Q ss_pred HHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCCCcHHHHHHHHHHHhcccCCCc---hhHhhhHHHHHHH
Q 022205 187 FCYEELILSQPT---VPLYHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGGKN---TKALFGICLCSSA 250 (301)
Q Consensus 187 ~~~~~al~~~p~---~~~~~~~la~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~l~~~~~~ 250 (301)
..|++++...|+ .+.+++.+|.++..+ |+ +++|+..|+++++..|+ + ..+...+..+...
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER---YRRAVELYERLLQIFPD-SPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH---HHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch---HHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHH
Confidence 999999999998 467999999999988 66 99999999999999997 4 4555667778888
Q ss_pred HHhhhccC
Q 022205 251 IAQLTKGR 258 (301)
Q Consensus 251 l~~~~~~~ 258 (301)
+++..+..
T Consensus 245 ~~~~~~~~ 252 (261)
T 3qky_A 245 LTELEGDA 252 (261)
T ss_dssp HHHHHTCT
T ss_pred HHHhhhhh
Confidence 88765544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=9e-23 Score=175.21 Aligned_cols=217 Identities=11% Similarity=-0.043 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
...+..+|..++..|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHH----------------HHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWR----------------ELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA 205 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~----------------~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 205 (301)
..|++++|+..+++++..+|.++..+. .+|.++ ..|++++|+.+|++++..+|+ ++.++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999999877665 467766 999999999999999999999 8999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccch--HHHHHHHHHHHHHHHhh
Q 022205 206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP--ELQSLAAAALEKDYKQR 283 (301)
Q Consensus 206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 283 (301)
+|.++...|+ +++|+.+|++++.++|+ +..+++.++.++...++..++.....+... +....+...+..+|...
T Consensus 223 l~~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 223 LGVLFNLSGE---YDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---HHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999 99999999999999996 899999999999998887665433322211 11123344455555555
Q ss_pred CC
Q 022205 284 AP 285 (301)
Q Consensus 284 ~~ 285 (301)
+.
T Consensus 299 g~ 300 (368)
T 1fch_A 299 GA 300 (368)
T ss_dssp TC
T ss_pred CC
Confidence 44
No 25
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.5e-22 Score=172.61 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=94.2
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---LDPVLHK 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~ 136 (301)
+|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+| ++..++.
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 3444445555555555555555555555555555555555555555555555555555555555555555 4444444
Q ss_pred HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
.+ |.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++++...|.++.++.
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 192 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44 355555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+|.++...|+ +++|+..|+++++.+|+
T Consensus 193 ~la~~~~~~~~---~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 193 KISTLYYQLGD---HELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHHHHTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHhhCcc
Confidence 55555555555 55555555555555553
No 26
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5e-22 Score=169.37 Aligned_cols=190 Identities=10% Similarity=-0.067 Sum_probs=138.2
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH---
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK--- 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--- 136 (301)
.|....++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (359)
T 3ieg_A 150 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 55566677777777777777777777777777777777777777777777777777777777777777777766544
Q ss_pred ---------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 137 ---------RRVAIAKAQGNFPTAIEWLNKYLETFMADHD----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 137 ---------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
.+|.++...|++++|+..+++++..+|+++. ++..+|.++...|++++|+.+|++++..+|+++.++
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 2366677777777777777777777777653 345577777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
..+|.++...|+ +++|+.+|+++++++|+ +..++..+..+...+.+
T Consensus 310 ~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 310 KDRAEAYLIEEM---YDEAIQDYEAAQEHNEN-DQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHH
Confidence 777777777777 77777777777777775 67777777766666554
No 27
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=2.2e-23 Score=161.97 Aligned_cols=157 Identities=18% Similarity=0.091 Sum_probs=151.0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
++++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++..+|+++.++..+|.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
++...++++.|+..+.+++..+|.++.++..+|.++...|+ +++|+..|+++++++|. +..+++++|.++..+++.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999 99999999999999996 999999999999998874
Q ss_pred h
Q 022205 255 T 255 (301)
Q Consensus 255 ~ 255 (301)
.
T Consensus 158 ~ 158 (184)
T 3vtx_A 158 D 158 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.8e-23 Score=175.17 Aligned_cols=212 Identities=13% Similarity=0.080 Sum_probs=176.9
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (301)
..++.+.++......+.. +|....++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus 33 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQA-------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 445667777777776654 5667788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 115 AEAEKAYSSLLEDNPLDPVLHKRR--------------VA-IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
++|+..+++++..+|.+..++..+ +. ++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999888887777666 55 677788888999999999988888888899999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhcc
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKG 257 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~ 257 (301)
|++++|+.++++++..+|+++.++..+|.++...|+ +++|+.+|+++++.+|+ +..+++.++.++..+++..++
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR---PQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHH
Confidence 999999999999998889888888999999999998 99999999999988885 888888888888887775543
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=2.5e-23 Score=175.46 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=179.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHH--------------HH-HHHHcCCHHHHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE--------------GI-LLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~a 124 (301)
+|....++..+|.++...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..++++
T Consensus 85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 677788999999999999999999999999999999988888776 66 688889999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 125 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
+..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++...|+++.++.
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 244 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY 244 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC-----------chhHhhhHHHHHHHHHhhhccC
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGK-----------NTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
.+|.++...|+ +++|+.+|++++..+|+. +..++..++.++..+++...+.
T Consensus 245 ~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 245 NMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999 999999999999999942 6788899999999988755443
No 30
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4.5e-23 Score=181.89 Aligned_cols=193 Identities=13% Similarity=0.001 Sum_probs=146.7
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
+|.....+..+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 66677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCH---HHHHHH------------HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADH---DAWREL------------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
.++...|++++|+..|+++++.+|+++ .++..+ |.++...|++++|+.+|++++...|.++.++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 777777777777777777777777776 665544 55577777777777777777777777777777
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
.+|.++...|+ +++|+..|+++++.+|+ +..+++.++.++...++..+
T Consensus 182 ~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 182 LRAECFIKEGE---PRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHHHTTC---GGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 77777777777 77777777777777774 77777777777777666443
No 31
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=1.2e-23 Score=194.96 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=154.0
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (301)
..|+++.++..+|.++..+|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
|.++...|++++|+.+|+++++++|+++.++.++|.++..+|+ +++|+.+|+++++++|+ +..++++++.++..++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 9999999999999999999999999999999999999999999 99999999999999996 9999999999999988
Q ss_pred hhhc
Q 022205 253 QLTK 256 (301)
Q Consensus 253 ~~~~ 256 (301)
+..+
T Consensus 160 ~~~~ 163 (723)
T 4gyw_A 160 DWTD 163 (723)
T ss_dssp CCTT
T ss_pred cHHH
Confidence 7543
No 32
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6e-22 Score=174.68 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=89.1
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK 136 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 136 (301)
+|....++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|++++..+|++. .++.
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 3344445555555555555555555555555555555555555555555555555555555555555555544 3333
Q ss_pred HH------------HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 137 RR------------VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 137 ~l------------~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
.+ |.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 215 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33 333455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 205 AYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
.+|.++...|+ +++|+..|++++.++|
T Consensus 216 ~l~~~~~~~g~---~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 216 KISTLYYQLGD---HELSLSEVRECLKLDQ 242 (450)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 55555555555 5555555555555555
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=5.2e-22 Score=161.62 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=180.4
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (301)
..++.+.++......+.. +|....++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++
T Consensus 49 ~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEI-------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HTTCTGGGHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 345556666666655544 5667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 115 AEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 115 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
++|+..+++++. .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205 193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL 241 (301)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (301)
+...|.++.++..++.++...|+ +++|..++++++++.|+ +....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~ 246 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFED---RDTAASYGLQLKRLYPG-SLEYQ 246 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-SHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHCCC-CHHHH
Confidence 99999999999999999999999 99999999999999996 55443
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.7e-22 Score=180.59 Aligned_cols=190 Identities=13% Similarity=-0.013 Sum_probs=159.4
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
.|....++..++..+...|++++|+.+|++++...|.+..++..+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 45667777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------QPTV-PLYHLAYADVLYT 212 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~ 212 (301)
.++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+.+|++++.. +|++ ..++..+|.++..
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888877 5554 6788888888888
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
.|+ +++|+..|+++++++|+ +..+++.++.++...|+
T Consensus 529 ~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 529 LKM---YDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKI 565 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTC
T ss_pred hcC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCC
Confidence 888 88888888888888885 78888888888887775
No 35
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.91 E-value=1.2e-22 Score=156.98 Aligned_cols=171 Identities=15% Similarity=0.039 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
.....+..+|..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++...|+ +++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR---HEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcccCC
Q 022205 222 AKKYYASTIDLTGG 235 (301)
Q Consensus 222 A~~~~~~al~~~p~ 235 (301)
|..+|+++++.+|+
T Consensus 163 A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 163 ALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCC
Confidence 99999999999986
No 36
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.91 E-value=1e-22 Score=161.67 Aligned_cols=168 Identities=13% Similarity=-0.019 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHH----------------HHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL----------------EGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
...+...|..++..|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|++++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCHHHHHH
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM--YKQAAFCYEELILSQPTVPLYHLA 205 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~ 205 (301)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.+|+..|+ ...+...|++++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 999999999999999999999999999999999999999999999999987764 4567788888764333 2346788
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 206 YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+|.++...|+ +++|+.+|+++++++|+
T Consensus 163 ~g~~~~~~~~---~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTR---YEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccC---HHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999995
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=1.1e-22 Score=167.36 Aligned_cols=212 Identities=17% Similarity=0.162 Sum_probs=184.7
Q ss_pred hccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh----HHHHHHHHH
Q 022205 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV----GRLEGILLE 109 (301)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----~~~~a~~~~ 109 (301)
...++.+.++......+.. +|....++..+|.++...|++++|+..+++++. .|.++.. +..+|.++.
T Consensus 14 ~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAK-------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHT-------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHH
Confidence 3456677777777777765 566666888999999999999999999999999 5544444 899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 189 (301)
..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|...+..+++++|+.+|
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995555566999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---CCC----chhHhhhHHHHHHHHHh
Q 022205 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---GGK----NTKALFGICLCSSAIAQ 253 (301)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~~l~~~~~~l~~ 253 (301)
++++..+|+++.++..+|.++...|+...+++|+..|++++++. |+. ...+++.++.++...++
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999988666788999999999886 421 13567778888877665
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=4.9e-22 Score=165.95 Aligned_cols=185 Identities=10% Similarity=-0.036 Sum_probs=168.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
+|..+.++..++..+...++.++|+..+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~ 135 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM 135 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence 5567788888999999999999999999999876 599999999999999999999999999998 899999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA--EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
+|.++..+|++++|+..|+++++.+|++.......+ .++...|++++|+.+|++++...|+++.++..+|.++..+|+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999875544433 334456899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 216 ~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+++|...|++++.++|+ +..++++++.++..+|+
T Consensus 216 ---~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 216 ---WEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGK 249 (291)
T ss_dssp ---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 99999999999999996 99999999999988775
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1.3e-21 Score=156.01 Aligned_cols=196 Identities=15% Similarity=0.059 Sum_probs=180.3
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc-CC
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-GL 113 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~ 113 (301)
..++.+.++......+.. .|....++..+|.++...|++++|+.++++++...|.+..++..+|.++... |+
T Consensus 20 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKS-------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHhhHHHHHHHHHHHHHh-------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 345667777777766654 5667788999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 114 WAEAEKAYSSLLE--DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 114 ~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
+++|+..+++++. .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999 67777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205 192 LILSQP-TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL 241 (301)
Q Consensus 192 al~~~p-~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (301)
++...| .++.++..++.++...|+ .+.|..+++.+.+.+|+ +..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~ 219 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPY-SEELQ 219 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC-CHHHH
Confidence 999999 999999999999999999 99999999999999996 65544
No 40
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.90 E-value=9e-24 Score=159.00 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=118.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 149 (301)
||..+...|++++|+..+.+++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 56666667888888888888888778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC-YEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
+|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888888888888888888888888888776665 478888888888888888888877775
No 41
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.4e-21 Score=178.39 Aligned_cols=240 Identities=13% Similarity=-0.003 Sum_probs=189.2
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
.++.++++......+.. +|....++..++.++...|++++|+.++++++...|++..++..+|.++...|+++
T Consensus 318 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEI-------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH
T ss_pred hcCHHHHHHHHHHHHHc-------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH
Confidence 44555566555555543 45555667777888888888888888888888888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
+|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++..|.++.+|..+|.+|...|++++|+.+|++++..
T Consensus 391 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc------cCCCchhHhhhHHHHHHHHHhhhccCCcccccch--H
Q 022205 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL------TGGKNTKALFGICLCSSAIAQLTKGRNKEDKESP--E 267 (301)
Q Consensus 196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~ 267 (301)
.|.++.++..+|.++...|+ +++|+..|+++++. +|+....+|..++.++...++..++.....+... .
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFNKSD---MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999 99999999999888 4431267888888888888775544322221110 0
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 022205 268 LQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~ 285 (301)
....+...+..+|...+.
T Consensus 548 ~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKI 565 (597)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHhCC
Confidence 012344456666666655
No 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.90 E-value=3.5e-23 Score=192.18 Aligned_cols=185 Identities=15% Similarity=0.026 Sum_probs=171.7
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ--------KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 130 (301)
++|.++..+...+ +..|++++|+..+++++ ..+|++..++..+|.++...|++++|+..|++++..+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3555555555444 77899999999999999 888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
+..+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++ +.+|+++++++|+++.+++++|.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
..+|+ +++|+..|+++++++|+ +..++++++.++...
T Consensus 545 ~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 545 SAEGD---RVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSG 581 (681)
T ss_dssp HHTTC---HHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC--
T ss_pred HHcCC---HHHHHHHHHhhcccCcc-cHHHHHHHHHHHHcc
Confidence 99999 99999999999999996 999999999887553
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=3.2e-21 Score=161.02 Aligned_cols=190 Identities=11% Similarity=0.008 Sum_probs=166.3
Q ss_pred cCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHH
Q 022205 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (301)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (301)
..+.+.++.....++.. ..+|++..++..+|.++...|++++|+.++++ |+++.++..+|.++..+|+++
T Consensus 78 ~~~~~~A~~~l~~ll~~-----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSR-----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp STTHHHHHHHHHHHHHS-----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHH
T ss_pred CCcHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHH
Confidence 34556666666665543 23578888999999999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHH--HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRV--AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
+|+..|++++..+|++.......+ .++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++
T Consensus 148 ~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 148 LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999875444333 344456899999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhcccCCCchh
Q 022205 194 LSQPTVPLYHLAYADVLYTLGGVDNILL-AKKYYASTIDLTGGKNTK 239 (301)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~ 239 (301)
..+|+++.++.++|.++...|+ ..+ +..+++++++++|+ +..
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~-~~~ 270 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRS-HPF 270 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTT-CHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCC-ChH
Confidence 9999999999999999999999 876 57899999999996 553
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=5.4e-21 Score=157.34 Aligned_cols=209 Identities=15% Similarity=0.029 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (301)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (301)
+.+.++......+... ...+|..+.++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|
T Consensus 20 ~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 20 QQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 3455666666666441 1124578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.....++.+ ...|++++|+.++++++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998766655544 667999999999988887766
Q ss_pred CC-------------------------------------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205 198 TV-------------------------------------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (301)
Q Consensus 198 ~~-------------------------------------~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (301)
.+ +.++..+|.++...|+ +++|+.+|++++..+|+ +..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~- 250 (275)
T 1xnf_A 176 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD---LDSATALFKLAVANNVH-NFV- 250 (275)
T ss_dssp CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCT-TCH-
T ss_pred cchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCch-hHH-
Confidence 54 4566677777777777 77777777777777774 322
Q ss_pred hhhHHHHHHHHHhhhcc
Q 022205 241 LFGICLCSSAIAQLTKG 257 (301)
Q Consensus 241 ~~~l~~~~~~l~~~~~~ 257 (301)
..+.++..+++..++
T Consensus 251 --~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 251 --EHRYALLELSLLGQD 265 (275)
T ss_dssp --HHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhh
Confidence 224455555554443
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.6e-21 Score=156.63 Aligned_cols=156 Identities=18% Similarity=0.141 Sum_probs=149.3
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP-LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 173 (301)
+.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC--chhHhhhH
Q 022205 174 EIYVSLQMYKQAAFCYEELILSQPTVP-------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGK--NTKALFGI 244 (301)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~l 244 (301)
.++...|++++|+.+|++++.++|+++ .++..+|.++...|+ +++|+.+|+++++++| . +..+++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN---IEKAEENYKHATDVTS-KKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc---HHHHHHHHHHHHhcCC-CcccHHHHHHH
Confidence 999999999999999999999999999 669999999999999 9999999999999999 6 78999999
Q ss_pred HHHHHHHHhh
Q 022205 245 CLCSSAIAQL 254 (301)
Q Consensus 245 ~~~~~~l~~~ 254 (301)
+.++...++.
T Consensus 160 ~~~~~~~~~~ 169 (228)
T 4i17_A 160 GVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988875
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.5e-22 Score=180.97 Aligned_cols=210 Identities=13% Similarity=0.033 Sum_probs=184.7
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (301)
++.+.++......+.. +|. ...+..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++
T Consensus 257 ~~~~~A~~~~~~~~~~-------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL-------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp TCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHhc-------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 3444455544444433 566 77888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|++++...
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCHH------HHHHHHHHHHHc----------CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccC
Q 022205 197 PTVPL------YHLAYADVLYTL----------GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGR 258 (301)
Q Consensus 197 p~~~~------~~~~la~~~~~~----------~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~ 258 (301)
|+++. .+..+|.++... |+ +++|+.+|+++++.+|+ +..+++.++.++..+++..++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHH
Confidence 76543 356678888888 88 99999999999999996 8899999999999988765543
No 47
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-22 Score=179.16 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=171.5
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHH
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (301)
++.+.++......+.. +|. ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 251 ~~~~~A~~~~~~~l~~-------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIEL-------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp SCHHHHHHHHHHHHHH-------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred CCHHHHHHHHHHHHhh-------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3444444444444433 455 77788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCHH------HHHHHHHHHHH---cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhc
Q 022205 197 PTVPL------YHLAYADVLYT---LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 197 p~~~~------~~~~la~~~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~ 256 (301)
|+++. ++..+|.++.. .|+ +++|+..|++++..+|+ +..+++.++.++...++..+
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHH
Confidence 87754 88888888888 888 88888888888888885 88888888888888776544
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.89 E-value=1.4e-23 Score=158.00 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=129.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~ 183 (301)
+|.++...|++++|+..+++++..+|+++.+++.+|.+|...|++++|+..|+++++.+|+++.+|+.+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 67888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHhcccCCCchhHhhhHHHHHHH
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY-YASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
+|+.+|+++++++|+++.++..+|.++...|+ +++|... ++++++++|+ +..++...+.+...
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 9877765 5899999996 88777665554433
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1e-20 Score=159.20 Aligned_cols=191 Identities=14% Similarity=0.056 Sum_probs=170.5
Q ss_pred CchhHHHHHHHHHHHHh-------CCCh-------HHHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMD-------CQCL-------DVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~-------~~~~-------~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 124 (301)
+|..+.+|..+|..+.. .|++ ++|+.+|++++. ..|++..+|..+|.++...|++++|...|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 67788888888887763 5886 899999999999 69999999999999999999999999999999
Q ss_pred HhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCCHHH
Q 022205 125 LEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 125 l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
+..+|.++. +|..+|.++...|++++|+..|+++++.+|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 999999987 999999999999999999999999999999998888877766544 799999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc---cCCCchhHhhhHHHHHHHHHh
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL---TGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|..+|.++...|+ +++|+..|++++.. .|+.....|..++......|+
T Consensus 206 ~~~~~~~~~~~g~---~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 206 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHHHHHHHTTCC---HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999 99999999999996 443356677777776666665
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.4e-21 Score=174.50 Aligned_cols=209 Identities=17% Similarity=0.066 Sum_probs=180.2
Q ss_pred ChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH
Q 022205 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (301)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (301)
+.+.++......+..........+....++..+|..+...|++++|+..+++++...|+ +.++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 34555666666665400000001112446778899999999999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|++++..+|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH------hhhHHHHHHHH
Q 022205 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA------LFGICLCSSAI 251 (301)
Q Consensus 198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------~~~l~~~~~~l 251 (301)
+++.++..+|.++...|+ +++|+..|+++++++|+ +... ++.++.++...
T Consensus 376 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEEV-QEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CSSCSSTTHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999885 3333 34455667666
No 51
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.5e-21 Score=170.55 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=194.8
Q ss_pred ccHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCc---------CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKR---------SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (301)
Q Consensus 22 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (301)
..|..++.......+. ......++......+... ...+|....++..+|.++...|++++|+..+++++.
T Consensus 254 ~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3677777777766666 555555555554433221 223677788899999999999999999999999999
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-----
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD----- 167 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----- 167 (301)
..|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHH---cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205 168 -AWRELAEIYVS---LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (301)
Q Consensus 168 -~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 243 (301)
++..+|.++.. .|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++|+ +..++..
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~-~~~~~~~ 488 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLART-MEEKLQA 488 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSS-HHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhccc-cHHHHHH
Confidence 99999999999 9999999999999999999999999999999999999 99999999999999996 7777666
Q ss_pred HHH
Q 022205 244 ICL 246 (301)
Q Consensus 244 l~~ 246 (301)
+..
T Consensus 489 ~~~ 491 (514)
T 2gw1_A 489 ITF 491 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=2.2e-21 Score=172.89 Aligned_cols=183 Identities=10% Similarity=-0.050 Sum_probs=169.2
Q ss_pred cCCh-HHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc---
Q 022205 36 VRRP-DKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--- 111 (301)
Q Consensus 36 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--- 111 (301)
.++. ++++......+.. +|....++..+|.++...|++++|+.+|++++..+|+ ..++..+|.++...
T Consensus 115 ~g~~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 115 TPDYSPEAEVLLSKAVKL-------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp SSSCCHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS
T ss_pred ccccHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC
Confidence 3444 5555555555544 7888899999999999999999999999999999999 69999999999999
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CChhHHHHHHHHHHHhcC---CCHHHHHHHHH
Q 022205 112 ------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFM---ADHDAWRELAE 174 (301)
Q Consensus 112 ------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~lg~ 174 (301)
|++++|+..|++++..+|+++.+|..+|.++... |++++|+..|+++++.+| .++.+|+++|.
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 9999999999999999999999999999999999 999999999999999999 99999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
+|...|++++|+.+|++++.++|+++.++..++.++..+|+ +++|+..+.+.
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~ 318 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT 318 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence 99999999999999999999999999999999999999999 99999877553
No 53
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.88 E-value=4.1e-21 Score=154.27 Aligned_cols=169 Identities=12% Similarity=0.001 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKR 137 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 137 (301)
+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|++++..+|+++. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 45788889999999999999999999999999764 68999999999999999999999999999999875 7889
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHcccH
Q 022205 138 RVAIAKA------------------QGNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMY 182 (301)
Q Consensus 138 l~~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~lg~~~~~~~~~ 182 (301)
+|.++.. .|++++|+..|+++++.+|+++.++ ..+|.++...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 9998876 5789999999999999999997554 5789999999999
Q ss_pred HHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 183 KQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 183 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++|+..|+++++..|+++ .++..+|.++..+|+ +++|+..++++....|+
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~---~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM---NAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhhCCC
Confidence 999999999999999986 679999999999999 99999999999998886
No 54
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=2.6e-21 Score=140.95 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=51.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
.+|+.+.++..+|..++..|++++|+..|+++++.+|.++.+|+++|.++...|++++|+..|+++++++|+++.++..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHH
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~ 245 (301)
|.++..+|+ +++|+..|+++++++|+ +..++.+++
T Consensus 88 g~~~~~~~~---~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 88 AACLVAMRE---WSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 444444444 44444444444444442 444444443
No 55
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.87 E-value=1.6e-21 Score=150.52 Aligned_cols=164 Identities=12% Similarity=0.029 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
...+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 345677899999999999999999999999999999999999999999999999999999999999 8877666665533
Q ss_pred -HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCcHH
Q 022205 144 -AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 144 -~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~~~ 220 (301)
..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|+. +.++..+|.++...|+ .+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~---~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ---GN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS---SC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC---CC
Confidence 33455578999999999999999999999999999999999999999999999876 6699999999999999 99
Q ss_pred HHHHHHHHHhc
Q 022205 221 LAKKYYASTID 231 (301)
Q Consensus 221 ~A~~~~~~al~ 231 (301)
+|+..|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999999875
No 56
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.87 E-value=3.6e-21 Score=140.23 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=115.6
Q ss_pred HHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 022205 90 LQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169 (301)
Q Consensus 90 ~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (301)
+..++|+.+..+..+|..++..|+|++|+..|++++..+|.++.++..+|.++..+|++++|+..|+++++++|+++.+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
+.+|.++...|++++|+.+|+++++++|+++.++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.3e-19 Score=148.69 Aligned_cols=159 Identities=14% Similarity=0.060 Sum_probs=147.0
Q ss_pred HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 022205 92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD--- 165 (301)
Q Consensus 92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--- 165 (301)
...|.++..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4568899999999999999999999999999999999999 8899999999999999999999999999998865
Q ss_pred HHHHHHHHHHHHH--------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCCCCcHH
Q 022205 166 HDAWRELAEIYVS--------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNIL 220 (301)
Q Consensus 166 ~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~~~ 220 (301)
+.+++.+|.++.. .|++++|+..|++++...|+++.+. +.+|.++...|+ ++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~---~~ 165 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL---YE 165 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---HH
Confidence 6789999999999 9999999999999999999987655 888999999999 99
Q ss_pred HHHHHHHHHhcccCC--CchhHhhhHHHHHHHHHh
Q 022205 221 LAKKYYASTIDLTGG--KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 221 ~A~~~~~~al~~~p~--~~~~~~~~l~~~~~~l~~ 253 (301)
+|+..|+++++..|+ ....+++.++.++..+|+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999996 246789999999999976
No 58
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.86 E-value=1.6e-20 Score=156.50 Aligned_cols=168 Identities=14% Similarity=-0.004 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
|.....+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999977777777777
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCCCc
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDN 218 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~ 218 (301)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..++..++.++...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~--- 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT--- 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT---
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC---
Confidence 78888889999999999999999999999999999999999999999999999999988 8889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 022205 219 ILLAKKYYASTID 231 (301)
Q Consensus 219 ~~~A~~~~~~al~ 231 (301)
.++|...|++++.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998875
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=2.1e-19 Score=148.25 Aligned_cols=176 Identities=11% Similarity=-0.014 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
|.++.++..+|..+...|++++|+.+|+++++ |+++.++..+|.++.. .+++++|+.+|++++..+ ++.++.
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 78 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH 78 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 44555666667777777777777777777666 5666666777777777 677777777777776654 566667
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 137 RRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 137 ~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+|.. .+++++|+.+|++++..+ ++.++..+|.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 77777776 777777777777776653 56667777777776 677777777777776654 4566666777
Q ss_pred HHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 209 VLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 209 ~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
++.. .++ +++|+.+|+++++.. +..+++.++.++..
T Consensus 155 ~~~~~~~~~~~---~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 155 LYDAGRGTPKD---LKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCC---HHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 7666 666 777777777766652 34566666666655
No 60
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=6.4e-21 Score=177.00 Aligned_cols=195 Identities=14% Similarity=-0.002 Sum_probs=166.7
Q ss_pred hccCChHHHHHHHHHHhcC-CCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC
Q 022205 34 LKVRRPDKVLRHGLSILND-PKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112 (301)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 112 (301)
...++.++++......+.. .......+|+...++..+|.+++..|++++|+..++++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 4556667777776666611 011223478888899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.+|+++.+|+++|.++...|++++|+.+|+++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHH
Q 022205 193 ILSQPTVPLYHLAYADVLYTLGG-----VDNILLAKKYYAST 229 (301)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~~~-----~~~~~~A~~~~~~a 229 (301)
++++|++..++.++|.++...++ .+.+++|...+...
T Consensus 561 l~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 561 PPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp CTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred cccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 99999999999999999877654 12255555555443
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.2e-19 Score=155.67 Aligned_cols=213 Identities=12% Similarity=-0.005 Sum_probs=175.8
Q ss_pred CChHHHHHHHHHHhc--CCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHH
Q 022205 37 RRPDKVLRHGLSILN--DPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGI 106 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~ 106 (301)
++.++++......+. ........+|.....|.++|.++...|++++|+.++++++... +..+.++..+|.
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 455555554444321 1012233466778889999999999999999999999998863 245677777787
Q ss_pred HHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Q 022205 107 LLEAK--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL-- 179 (301)
Q Consensus 107 ~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-- 179 (301)
++... +++++|+.+|++++..+|+++.++..++.++.. .++.++|+..++++++++|+++.++..+|..+...
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 66654 579999999999999999999999999988654 57788999999999999999999999998777654
Q ss_pred --ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 180 --QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 180 --~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
|++++|+.++++++..+|+++.++..+|.++...|+ +++|+..|.++++.+|+ +..+++.++.++.....
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999 99999999999999996 99999999999876554
No 62
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.86 E-value=1.7e-20 Score=170.79 Aligned_cols=165 Identities=12% Similarity=-0.049 Sum_probs=139.8
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
.|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHhccc
Q 022205 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL---GGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~~~~A~~~~~~al~~~ 233 (301)
++++.+|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++... |+ +++|...|+++++.+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999 77 999999999999999
Q ss_pred CCCchhHhhhHH
Q 022205 234 GGKNTKALFGIC 245 (301)
Q Consensus 234 p~~~~~~~~~l~ 245 (301)
|. +...++.++
T Consensus 159 p~-~~~~~~~l~ 169 (568)
T 2vsy_A 159 VG-AVEPFAFLS 169 (568)
T ss_dssp CC-CSCHHHHTT
T ss_pred Cc-ccChHHHhC
Confidence 96 665554443
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=156.90 Aligned_cols=174 Identities=13% Similarity=0.139 Sum_probs=157.7
Q ss_pred CcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh--------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 022205 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (301)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 127 (301)
..-.|..+.++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999995 5677788999999999999999999999999986
Q ss_pred -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
+|....++..+|.++...|++++|+.+++++++.. |....++..+|.++...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567799999999999999999999999999885 555678999999999999999999999999
Q ss_pred Hhh--------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 193 ILS--------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 193 l~~--------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
+.. .|....++..+|.++...|+ +++|+.+|+++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGK---FKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 988 66667889999999999999 999999999999764
No 64
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=2.3e-21 Score=145.51 Aligned_cols=116 Identities=14% Similarity=-0.040 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 117 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
+-..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|+++|.++...|++++|+.+|++++.++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 197 p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|+++.+++++|.++..+|+ +++|+.+|++++++.|+
T Consensus 101 P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSND 136 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 99999999999999986
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.85 E-value=3.3e-20 Score=147.14 Aligned_cols=156 Identities=13% Similarity=0.008 Sum_probs=136.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR----------------RVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
++..++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999 99999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (301)
Q Consensus 161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (301)
.+|+++.+++.+|.++...|++++|+.+|+++++++|+++.++..+|.+++..|+. ....+...|.+++..+| ...+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~a 159 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ-EKKKLETDYKKLSSPTK--MQYA 159 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CCCH--HHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCCCc--hhHH
Confidence 99999999999999999999999999999999999999999999999999887641 15667888888775544 4457
Q ss_pred hhhHHHHHHHHHhhh
Q 022205 241 LFGICLCSSAIAQLT 255 (301)
Q Consensus 241 ~~~l~~~~~~l~~~~ 255 (301)
++.++.++..+++..
T Consensus 160 ~~~~g~~~~~~~~~~ 174 (208)
T 3urz_A 160 RYRDGLSKLFTTRYE 174 (208)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHccCHH
Confidence 788888888877643
No 66
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.85 E-value=8e-21 Score=156.32 Aligned_cols=165 Identities=16% Similarity=0.037 Sum_probs=148.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhC----CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 146 (301)
+......|++++|+..+++++... |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 333445688999999999999874 4677899999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++.++|+++.....++.+ ...|+ +++|+..|
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~ 167 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVL 167 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776666544 66688 99999999
Q ss_pred HHHhcccCCCchhH
Q 022205 227 ASTIDLTGGKNTKA 240 (301)
Q Consensus 227 ~~al~~~p~~~~~~ 240 (301)
.+++...|+ +...
T Consensus 168 ~~~~~~~~~-~~~~ 180 (275)
T 1xnf_A 168 KQHFEKSDK-EQWG 180 (275)
T ss_dssp HHHHHHSCC-CSTH
T ss_pred HHHHhcCCc-chHH
Confidence 999998885 4433
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=9.2e-19 Score=147.24 Aligned_cols=174 Identities=9% Similarity=-0.060 Sum_probs=162.0
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR-VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
++|+...+|..+|..+...|++++|..+|+++++..|.++. +|..+|.++...|++++|+..|++++..+|.+..++..
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 47788889999999999999999999999999999999886 89999999999999999999999999999999888887
Q ss_pred HHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHHHH
Q 022205 138 RVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QP-TVPLYHLAYADVLYT 212 (301)
Q Consensus 138 l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~ 212 (301)
.+.+... .|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+.+|++++.. .| +...+|..++..+..
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 7766544 799999999999999999999999999999999999999999999999995 55 378899999999999
Q ss_pred cCCCCcHHHHHHHHHHHhcccCC
Q 022205 213 LGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.|+ ++.|...+.++++..|+
T Consensus 254 ~g~---~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 254 IGD---LASILKVEKRRFTAFRE 273 (308)
T ss_dssp HSC---HHHHHHHHHHHHHHTTT
T ss_pred cCC---HHHHHHHHHHHHHHccc
Confidence 999 99999999999999996
No 68
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=1.5e-19 Score=150.95 Aligned_cols=169 Identities=14% Similarity=0.034 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 131 (301)
...|...+.++...|++++|+.++.+++...+ ....++..+|.++...|++++|+.+|++++...|..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34566778888999999999999999998753 225688999999999999999999999999977643
Q ss_pred HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH---
Q 022205 132 PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL--- 201 (301)
Q Consensus 132 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 201 (301)
..++..+|.+|... |++++|+.+|++++++.|.+ ..++..+|.++...|++++|+.+|++++.+.|+++.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 45889999999996 99999999999999998865 567899999999999999999999999999987653
Q ss_pred ----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 202 ----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 202 ----~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++.++|.++..+|+ +++|+.+|++++.++|+
T Consensus 197 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATD---AVAAARTLQEGQSEDPN 231 (292)
T ss_dssp GHHHHHHHHHHHHHHTTC---HHHHHHHHHGGGCC---
T ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 67899999999999 99999999999999996
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.3e-19 Score=159.29 Aligned_cols=238 Identities=15% Similarity=0.119 Sum_probs=177.1
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHh-----cCCC-------CcCcCCchhHHHHHHHHHHHHh----CCChHHHHHH
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSIL-----NDPK-------KRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDC 86 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~ 86 (301)
.|+.++++....++.+++....++.... .... ....++|....++..++..+.. .|++++|+.+
T Consensus 156 ~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~ 235 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235 (472)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5777777777777777765555444321 1111 1123467777777777766554 3677889999
Q ss_pred HHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------------------CC
Q 022205 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-------------------GN 147 (301)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-------------------g~ 147 (301)
+++++...|+.+.++..+|.++...|++++|+..|++++..+|+++.++..+|.+|... +.
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~ 315 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL 315 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999887643 33
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH---HHHHHHHH-HHHcCCCCcHHHHH
Q 022205 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL---YHLAYADV-LYTLGGVDNILLAK 223 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~~~~~~~~~A~ 223 (301)
+++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.++|++.. ++..+|.+ +...|+ +++|+
T Consensus 316 ~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Ai 392 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC---EDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC---HHHHH
T ss_pred HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence 678899999999999999999999999999999999999999999999887654 45666654 456788 99999
Q ss_pred HHHHHHhcccCC-----------------------CchhHhhhHHHHHHHHHhhhccCCcccc
Q 022205 224 KYYASTIDLTGG-----------------------KNTKALFGICLCSSAIAQLTKGRNKEDK 263 (301)
Q Consensus 224 ~~~~~al~~~p~-----------------------~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 263 (301)
.+|+++++++|. .+..+++.+|.++...|+..++.....+
T Consensus 393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998877543 2556777788888877776655544433
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.9e-19 Score=138.77 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=146.9
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
....+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
...|++++|+.++++++...|.++.++..+|.++...|+ +++|+.+|+++++.+|. +..+++.++.++...++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999 99999999999999996 89999999999988775
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=2.1e-18 Score=143.76 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=190.8
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHhCCCchhh
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ--CLDVAKDCIKVLQKQFPESKRV 100 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~ 100 (301)
.+..+++..+..+ ..+++++.....++.- +|+..++|...+.++...| ++++++.+++.++..+|++..+
T Consensus 34 ~~~~~~~a~~~~~-e~s~~aL~~t~~~L~~-------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 34 QIMGLLLALMKAE-EYSERALHITELGINE-------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp HHHHHHHHHHHTT-CCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 3555666555544 5556788888877766 8999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHH----HHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHhcCCCHHHHHH
Q 022205 101 GRLEGILL----EAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--TAIEWLNKYLETFMADHDAWRE 171 (301)
Q Consensus 101 ~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~l~~~p~~~~~~~~ 171 (301)
|..++.++ ... +++++++.++.+++..+|.+..+|...+.+....|.++ +++.++.++++.+|.+..+|..
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~ 185 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSH 185 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999 766 78999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHccc------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc---CCCchhHhh
Q 022205 172 LAEIYVSLQM------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT---GGKNTKALF 242 (301)
Q Consensus 172 lg~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~ 242 (301)
.+.+....+. +++++.++.+++..+|.+..+|..++.++...|+ ..+....++.+++.++ | .+..++.
T Consensus 186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~--~~~~~~~~~~~~~~~~~~~~-~s~~al~ 262 (306)
T 3dra_A 186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR--SITQLEEFSLQFVDLEKDQV-TSSFALE 262 (306)
T ss_dssp HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--CGGGGHHHHHTTEEGGGTEE-SCHHHHH
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC--ChHHHHHHHHHHHhccCCCC-CCHHHHH
Confidence 9999999887 9999999999999999999999999999999987 2344556888888876 6 4888888
Q ss_pred hHHHHHHHHH
Q 022205 243 GICLCSSAIA 252 (301)
Q Consensus 243 ~l~~~~~~l~ 252 (301)
.++.++.+.+
T Consensus 263 ~la~~~~~~~ 272 (306)
T 3dra_A 263 TLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHccC
Confidence 8988887544
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.84 E-value=1.6e-19 Score=148.61 Aligned_cols=170 Identities=18% Similarity=0.148 Sum_probs=152.0
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---- 127 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 127 (301)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+..|++++..
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999873 566778999999999999999999999999987
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 128 ----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 128 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
+|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667789999999999999999999999999998 6667789999999999999999999999999976
Q ss_pred C-------------------------------------------------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 022205 196 Q-------------------------------------------------PTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 196 ~-------------------------------------------------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~ 226 (301)
. |..+.++..+|.++...|+ +++|+.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~ 275 (283)
T 3edt_B 199 AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLE 275 (283)
T ss_dssp HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 2 3445578888888888888 88898888
Q ss_pred HHHhcc
Q 022205 227 ASTIDL 232 (301)
Q Consensus 227 ~~al~~ 232 (301)
+++++.
T Consensus 276 ~~al~~ 281 (283)
T 3edt_B 276 DCASRN 281 (283)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 888875
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=4e-18 Score=140.56 Aligned_cols=191 Identities=13% Similarity=0.001 Sum_probs=169.1
Q ss_pred CChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH--
Q 022205 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-- 110 (301)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-- 110 (301)
.+.+.++......+. |....++..+|.++.. .+++++|+.+++++++.. ++.++..+|.++..
T Consensus 20 ~~~~~A~~~~~~a~~---------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~ 88 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD---------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQ 88 (273)
T ss_dssp TCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCC
Confidence 466666666665554 2445788899999999 999999999999999864 78899999999999
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cc
Q 022205 111 --KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQ 180 (301)
Q Consensus 111 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~ 180 (301)
.+++++|+.+|++++..+ ++.++..+|.++.. .+++++|+.+|+++++.+ ++.++..+|.++.. .+
T Consensus 89 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 89 GVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred CcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999874 88999999999999 999999999999999976 68899999999999 99
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
++++|+.+|++++.. .++.++..+|.++.. .++ +++|+.+|+++++..| ..+++.++.++..
T Consensus 165 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 165 DLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN---FKEALARYSKACELEN---GGGCFNLGAMQYN 230 (273)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC---HHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHHhCCC---HHHHHHHHHHHHc
Confidence 999999999999987 468899999999999 899 9999999999999865 5678888887765
No 74
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.83 E-value=5.7e-18 Score=142.02 Aligned_cols=219 Identities=14% Similarity=0.098 Sum_probs=184.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHh
Q 022205 24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQ 93 (301)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~ 93 (301)
+...+...+. ....+++++.....++.. +|++.++|...+.+....+. +++++.+++.++..
T Consensus 32 ~~~~~~~~~~-~~e~s~eaL~~t~~~L~~-------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 32 ATQAVFQKRQ-AGELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHH-TTCCSHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 3333433333 345667788888888877 89999999888877766654 68999999999999
Q ss_pred CCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHH
Q 022205 94 FPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWR 170 (301)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~ 170 (301)
+|++..+|..++.++...+ .+++++.++.+++..+|.|..+|...+.+....|. +++++.++.++++.+|.+..+|.
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999998 49999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCC-------CcHHHHHHHHHH
Q 022205 171 ELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGV-------DNILLAKKYYAS 228 (301)
Q Consensus 171 ~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~-------~~~~~A~~~~~~ 228 (301)
.++.++... +.+++++.++.+++..+|++..+|+.+..++... |.. +-++++++.+.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 999999887 6799999999999999999999998666555554 210 228999999999
Q ss_pred HhcccCCCchhHhhhHHHHHHHH
Q 022205 229 TIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 229 al~~~p~~~~~~~~~l~~~~~~l 251 (301)
++++.|+ +.+.+.++++....+
T Consensus 264 lle~~pd-~~w~l~~~~~~~~~~ 285 (331)
T 3dss_A 264 LQELEPE-NKWCLLTIILLMRAL 285 (331)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHhhCcc-cchHHHHHHHHHHhh
Confidence 9999997 777666666544443
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=2.3e-20 Score=140.06 Aligned_cols=116 Identities=15% Similarity=0.002 Sum_probs=101.6
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (301)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (301)
..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 34566677788888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
++.+|+++|.++...|++++|+.+|++++.+.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999888765
No 76
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=2e-19 Score=156.80 Aligned_cols=195 Identities=11% Similarity=-0.001 Sum_probs=161.2
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPL 130 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~ 130 (301)
+.....+..+|..++..|++++|+.++++++...|+++ .++..+|.++...|++++|+..|++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45666777889999999999999999999999998876 57888999999999999999999999886 566
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHccc-----------------HHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQM-----------------YKQAAF 187 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~~~-----------------~~~A~~ 187 (301)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6778999999999999999999999999888 45557788999999999999 999999
Q ss_pred HHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-Cc----hhHhhhHHHHHHHHHhhhc
Q 022205 188 CYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KN----TKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 188 ~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~----~~~~~~l~~~~~~l~~~~~ 256 (301)
++++++.+. |....++..+|.++...|+ +++|+.+|++++++.|. .+ ..+++.++.++...++..+
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD---FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 999988763 2334578889999999999 99999999999988774 11 2367778887777776554
Q ss_pred cC
Q 022205 257 GR 258 (301)
Q Consensus 257 ~~ 258 (301)
+.
T Consensus 282 A~ 283 (411)
T 4a1s_A 282 AA 283 (411)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.8e-19 Score=149.44 Aligned_cols=198 Identities=18% Similarity=0.144 Sum_probs=165.4
Q ss_pred ccCChHHHHHHHHHHhcCCC-CcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC--------CCchhhHHHHH
Q 022205 35 KVRRPDKVLRHGLSILNDPK-KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEG 105 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a 105 (301)
..++.+.++......+.... ......|....++..+|.++...|++++|+.++++++... |....++..+|
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34566666666666553100 0011256788899999999999999999999999999873 56677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAW 169 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~ 169 (301)
.++...|++++|+..+++++... |....++..+|.++...|++++|+.++++++.. .|..+.++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999863 556678999999999999999999999999998 66667889
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhh-------------------------------------------------CCCCH
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELILS-------------------------------------------------QPTVP 200 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~ 200 (301)
..+|.++...|++++|+.+|++++.. .|..+
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 278 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence 99999999999999999999999974 35556
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 201 ~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.++..+|.++...|+ +++|+.+|++++++.|.
T Consensus 279 ~~~~~la~~~~~~g~---~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 279 TTLKNLGALYRRQGK---FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhc
Confidence 788889999999999 99999999999988773
No 78
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.82 E-value=1.2e-19 Score=136.02 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 118 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 198 ~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
+++.+++.+|.++..+|+ +++|+.+|+++++++|+ +.........+...
T Consensus 87 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIAN-XPEFXELSTRVSSM 135 (148)
T ss_dssp TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC-CCcchHHHHHHHHH
Confidence 999999999999999999 99999999999999885 54443333333333
No 79
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=2e-19 Score=156.76 Aligned_cols=218 Identities=13% Similarity=0.049 Sum_probs=171.5
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCch-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGIL 107 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~ 107 (301)
..++.+.++......+.. .+.++. ...++..+|.++...|++++|+.++++++.. .|....++..+|.+
T Consensus 60 ~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 455667777776666643 111222 3357888899999999999999999999887 45667788899999
Q ss_pred HHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHhc--
Q 022205 108 LEAKGLWAEAEKAYSSLLED------NPLDPVLHKRRVAIAKAQGN-----------------FPTAIEWLNKYLETF-- 162 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~-- 162 (301)
+...|++++|+..|++++.. .|....++..+|.++...|+ +++|+.+++++++..
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886 55566788999999999999 999999999888764
Q ss_pred ----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 163 ----MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 163 ----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
|....++..+|.++...|++++|+.+|++++.+.|.... ++..+|.++...|+ +++|+.+|++++.+
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ---FEDAAEHYKRTLAL 292 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence 233558889999999999999999999999987764332 78889999999999 99999999999988
Q ss_pred cCC-----CchhHhhhHHHHHHHHHhhhccCC
Q 022205 233 TGG-----KNTKALFGICLCSSAIAQLTKGRN 259 (301)
Q Consensus 233 ~p~-----~~~~~~~~l~~~~~~l~~~~~~~~ 259 (301)
.|. ....+++.++.++...++..++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIE 324 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 774 125677788888888777555443
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.82 E-value=1.9e-19 Score=138.81 Aligned_cols=156 Identities=13% Similarity=-0.007 Sum_probs=137.9
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
|......+.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 445567888999999999999999999999999999999999999999999999999999999999999 8887766665
Q ss_pred HHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-CchhHhhhHHHHHHHHH
Q 022205 175 IYV-SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLCSSAIA 252 (301)
Q Consensus 175 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~l~~~~~~l~ 252 (301)
+.. ..+....|+..+++++..+|+++.+++.+|.++...|+ +++|+..|+++++.+|+ .+..+++.++.++..+|
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 543 33344568999999999999999999999999999999 99999999999999996 34669999999999988
Q ss_pred hh
Q 022205 253 QL 254 (301)
Q Consensus 253 ~~ 254 (301)
+.
T Consensus 159 ~~ 160 (176)
T 2r5s_A 159 QG 160 (176)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 81
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=154.07 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhC------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------H
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P 132 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 132 (301)
.++..+|.+++..|++++|+.++++++... |....++..+|.++...|++++|+..+++++...|.. .
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 455555666666666666666666555442 2234455555666666666666666666655543322 2
Q ss_pred HHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcccHHHHH
Q 022205 133 VLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAA 186 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~lg~~~~~~~~~~~A~ 186 (301)
.++..+|.++...|+ +++|+..+++++.. .|....++..+|.++...|++++|+
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 355555666666666 55666655555554 2222345555566666666666666
Q ss_pred HHHHHHHhhCCCCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc------hhHhhhHHHHHHHHHhh
Q 022205 187 FCYEELILSQPTVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN------TKALFGICLCSSAIAQL 254 (301)
Q Consensus 187 ~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~l~~~~~~l~~~ 254 (301)
.++++++.+.|... .++..+|.++...|+ +++|+.+|++++.+.|. . ..++..++.++...++.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLARQ-LKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHh-CcCchHHHHHHHHHHHHHHHhCcH
Confidence 66666555443322 255555666666666 66666666665555442 1 34445555555554443
Q ss_pred h
Q 022205 255 T 255 (301)
Q Consensus 255 ~ 255 (301)
.
T Consensus 284 ~ 284 (406)
T 3sf4_A 284 E 284 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=1.4e-18 Score=139.51 Aligned_cols=156 Identities=10% Similarity=0.048 Sum_probs=139.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR 170 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 170 (301)
++..++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456788999999999999999999999999998874 68999999999999999999999999999999864 789
Q ss_pred HHHHHHHH------------------cccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHcCC
Q 022205 171 ELAEIYVS------------------LQMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGG 215 (301)
Q Consensus 171 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~ 215 (301)
.+|.++.. .|++++|+..|++++...|+++.++ ..+|.+++..|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999886 5799999999999999999987554 578999999999
Q ss_pred CCcHHHHHHHHHHHhcccCCC--chhHhhhHHHHHHHHHhhh
Q 022205 216 VDNILLAKKYYASTIDLTGGK--NTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 216 ~~~~~~A~~~~~~al~~~p~~--~~~~~~~l~~~~~~l~~~~ 255 (301)
+++|+..|+++++..|+. ...+++.++.++..+++..
T Consensus 163 ---~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 163 ---WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 999999999999999961 2378999999999998733
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.81 E-value=1.6e-18 Score=144.42 Aligned_cols=158 Identities=8% Similarity=-0.081 Sum_probs=149.5
Q ss_pred HhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 022205 92 KQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (301)
Q Consensus 92 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (301)
...|++...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+....+..
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999977777778
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc--hhHhhhHHHHHH
Q 022205 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN--TKALFGICLCSS 249 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~l~~~~~ 249 (301)
.+..+...++.++|+..|++++..+|+++.+++.+|.++...|+ +++|+..|+++++.+|+ + ..++..++.++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLT-AADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccc-cccchHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999 99999999999999997 5 889999999999
Q ss_pred HHHh
Q 022205 250 AIAQ 253 (301)
Q Consensus 250 ~l~~ 253 (301)
.+|+
T Consensus 267 ~~g~ 270 (287)
T 3qou_A 267 ALGT 270 (287)
T ss_dssp HHCT
T ss_pred HcCC
Confidence 9886
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.81 E-value=8.5e-19 Score=151.78 Aligned_cols=165 Identities=13% Similarity=0.002 Sum_probs=146.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhC---C---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF---P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DPV 133 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~---p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~ 133 (301)
+...|..++..|++++|+.++++++... | ..+.++..+|.++...|++++|+.++++++...+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3347999999999999999999999862 3 34578999999999999999999999999986433 345
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hC-CCCHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQ-PTVPL 201 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~ 201 (301)
++..+|.++...|++++|+.+|+++++..|.. ..++.++|.+|...|++++|+.+|++++. .+ |..+.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 89999999999999999999999999886644 25899999999999999999999999998 46 77788
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
++..+|.++...|+ +++|..+|++++.+.+
T Consensus 266 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 266 AYFLITQIHYKLGK---IDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999854
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=8e-19 Score=146.50 Aligned_cols=183 Identities=14% Similarity=0.039 Sum_probs=149.7
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC---
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD--- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~--- 131 (301)
....++.++|.++...|++++|+.++++++...|.. ..++..+|.++... |++++|+.+|++++...|.+
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 356789999999999999999999999999987632 45788999999996 99999999999999987754
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
..++..+|.++...|++++|+.+|+++++..|.++. ++..+|.++...|++++|+.+|++++.++|+.+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 457899999999999999999999999999987653 6789999999999999999999999999998765
Q ss_pred H-----HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 202 Y-----HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 202 ~-----~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
. +..++..+ ..++.+.+++|+..|.+++.++|. +...+..+-.
T Consensus 235 ~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l~~~-~~~~~~~~k~ 282 (292)
T 1qqe_A 235 SRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRLDKW-KITILNKIKE 282 (292)
T ss_dssp ---HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCCCHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCccHHH-HHHHHHHHHH
Confidence 3 34455544 334445599999999999999995 5555544443
No 86
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=5.9e-19 Score=148.59 Aligned_cols=245 Identities=14% Similarity=0.069 Sum_probs=177.5
Q ss_pred hccCChHHHHHHHHHHhcCCCCcCcCCch-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHH
Q 022205 34 LKVRRPDKVLRHGLSILNDPKKRSALGPD-VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGI 106 (301)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~ 106 (301)
...++.+.++......+.. .+.++. ...++..+|.++...|++++|+.++++++.. .|....++..+|.
T Consensus 16 ~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3455666666666666543 111222 3567888899999999999999999988876 2345667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHH
Q 022205 107 LLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLE 160 (301)
Q Consensus 107 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~ 160 (301)
++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|+..+++++.
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998865433 3388889999999999 8999999988887
Q ss_pred hc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 161 TF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 161 ~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.. |..+.++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|+ +++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 248 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE---FETASEYYKK 248 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 62 3335678889999999999999999999998775433 2378889999999999 9999999999
Q ss_pred HhcccCC-C----chhHhhhHHHHHHHHHhhhccCCcccccchH--------HHHHHHHHHHHHHHhhCC
Q 022205 229 TIDLTGG-K----NTKALFGICLCSSAIAQLTKGRNKEDKESPE--------LQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 229 al~~~p~-~----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~ 285 (301)
++.+.|. . ...++..++.++...++..++.....+.... ....+...+..+|...+.
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9988664 1 1667778888888777755543332222111 112234456666666655
No 87
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.80 E-value=6e-19 Score=131.16 Aligned_cols=130 Identities=15% Similarity=0.016 Sum_probs=109.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 119 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
..|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 199 ~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
++.+++.+|.++..+|+ +++|+.+|+++++++|+ +.........+...+.
T Consensus 85 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD---LDGAESGFYSARALAAA-QPAHEALAARAGAMLE 134 (142)
T ss_dssp CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT-CGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999985 5544444444444333
No 88
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=2.5e-19 Score=134.25 Aligned_cols=119 Identities=13% Similarity=-0.003 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 022205 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (301)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (301)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45778888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 203 (301)
++.+++.+|.++...|++++|+.+|++++.++|+++...
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999999999999999999999999999999998876553
No 89
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=150.81 Aligned_cols=193 Identities=12% Similarity=-0.029 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDP 132 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~ 132 (301)
....+...|..++..|++++|+.++++++...|.++ .++..+|.++...|++++|+..+++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 455778889999999999999999999999999874 57889999999999999999999999875 34456
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHccc--------------------HHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAA 186 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~--------------------~~~A~ 186 (301)
.++..+|.++...|++++|+..+++++...|.. +.++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999987643 4589999999999999 99999
Q ss_pred HHHHHHHhh------CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----chhHhhhHHHHHHHHHhhh
Q 022205 187 FCYEELILS------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 187 ~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~~l~~~~~~l~~~~ 255 (301)
.++++++.+ .|....++..+|.++...|+ +++|+.+|++++++.|. . ...++..++.++..+++..
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876 33345689999999999999 99999999999998764 1 1337788888888888765
Q ss_pred ccC
Q 022205 256 KGR 258 (301)
Q Consensus 256 ~~~ 258 (301)
++.
T Consensus 245 ~A~ 247 (406)
T 3sf4_A 245 TAS 247 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.80 E-value=5.7e-18 Score=123.35 Aligned_cols=133 Identities=23% Similarity=0.261 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|++++|+.++++++...|.++.++..+|.++...|+ +++|..+|.+++..+|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 888888888888888888888888888888888888 88888888888887774
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=2.6e-17 Score=137.23 Aligned_cols=216 Identities=11% Similarity=0.015 Sum_probs=183.1
Q ss_pred HHHHHHHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---
Q 022205 69 QVSIAAMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIA--- 142 (301)
Q Consensus 69 ~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--- 142 (301)
......+..|.+ ++|+.++.+++..+|++..+|..++.++...| ++++++..+..++..+|.+..+|...+.++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 334445556665 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred -HHc---CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC
Q 022205 143 -KAQ---GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--QAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (301)
Q Consensus 143 -~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 216 (301)
... +++++++.++.++++.+|.+..+|...+.+....|.++ +++.++.+++..+|.|..+|...+.+....+..
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence 777 78999999999999999999999999999999999998 999999999999999999999999999887641
Q ss_pred ---CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCccccc------chHHHHHHHHHHHHHHHhhCC
Q 022205 217 ---DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKE------SPELQSLAAAALEKDYKQRAP 285 (301)
Q Consensus 217 ---~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 285 (301)
+.++++++++.+++..+|. +..+|+.++.+...++............ ...-+..+...+.++|.+.+.
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 1289999999999999996 9999999998888876532211111011 012345677888888886655
No 92
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=1.9e-18 Score=145.46 Aligned_cols=193 Identities=12% Similarity=-0.036 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLED------NPLDP 132 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~ 132 (301)
....+...|..++..|++++|+.++++++...|+++ .++..+|.++...|++++|+..+++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344567789999999999999999999999999874 67889999999999999999999999876 44556
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHccc--------------------HHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQM--------------------YKQAA 186 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~--------------------~~~A~ 186 (301)
.++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999987644 3488999999999999 99999
Q ss_pred HHHHHHHhhC------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-C----chhHhhhHHHHHHHHHhhh
Q 022205 187 FCYEELILSQ------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-K----NTKALFGICLCSSAIAQLT 255 (301)
Q Consensus 187 ~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~----~~~~~~~l~~~~~~l~~~~ 255 (301)
.++++++.+. |....++..+|.++...|+ +++|+.+|++++++.|. . ...++..++.++...++..
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 9999998762 3335688999999999999 99999999999988664 1 2347788888888888765
Q ss_pred ccC
Q 022205 256 KGR 258 (301)
Q Consensus 256 ~~~ 258 (301)
.+.
T Consensus 241 ~A~ 243 (338)
T 3ro2_A 241 TAS 243 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=4.8e-19 Score=145.75 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=139.0
Q ss_pred HhCCChHHHHHHHHHHHHhC--------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDPVLHKRR 138 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 138 (301)
...|++++|+.++++++... |....++..+|.++...|++++|+..|++++.. +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45688888888888888742 556788999999999999999999999999976 46667799999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--------CCCCHHH
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--------QPTVPLY 202 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 202 (301)
|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++.+ .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999998 4666789999999999999999999999999998 6667789
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
+..+|.++...|+ +++|+.+|++++++.
T Consensus 172 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 172 KNNLASCYLKQGK---YQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999873
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.79 E-value=1.7e-17 Score=120.82 Aligned_cols=135 Identities=21% Similarity=0.193 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 022205 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (301)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 144 (301)
.++..+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
.|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++..+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999998863
No 95
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.79 E-value=2.5e-19 Score=152.58 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=142.6
Q ss_pred hCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 022205 76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVA 140 (301)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~ 140 (301)
..+++++|+..++.++...|..+.++..+|.+++..|++++|+..|++++..+|++ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888889999999999999999999999999999999999998 689999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+.+|++++.++|++..++..+|.++...|+ ++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~ 281 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QL 281 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HH-HHHHHHHhcc
Q 022205 221 LA-KKYYASTIDL 232 (301)
Q Consensus 221 ~A-~~~~~~al~~ 232 (301)
+| ...|.+++..
T Consensus 282 ~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 282 AREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 88 5577777654
No 96
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=6.1e-18 Score=146.38 Aligned_cols=219 Identities=8% Similarity=-0.057 Sum_probs=173.3
Q ss_pred hccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc-------hhhHHHHHH
Q 022205 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-------KRVGRLEGI 106 (301)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~ 106 (301)
...++.+.++......+...... .-.+....++..+|.++...|+++.|+.++.+++...+.. ..++..+|.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45567777777777766431111 1133477889999999999999999999999999986533 357889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hc-CCCHHHHHHHHH
Q 022205 107 LLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TF-MADHDAWRELAE 174 (301)
Q Consensus 107 ~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~-p~~~~~~~~lg~ 174 (301)
++...|++++|+..|++++...+.. ..++.++|.++...|++++|+.+++++++ .+ |..+.++..+|.
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 9999999999999999999865433 24899999999999999999999999999 45 777889999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQ-----PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
++...|++++|+.++++++.+. |.....+..+|.++...|+.+.+++|+..+++. ...| ....++..++.++.
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~-~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA-DLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH-HHHHHHHHHHHHHH
Confidence 9999999999999999999874 333334567899998888744466777777766 3334 35667778888888
Q ss_pred HHHhhh
Q 022205 250 AIAQLT 255 (301)
Q Consensus 250 ~l~~~~ 255 (301)
..++..
T Consensus 351 ~~g~~~ 356 (383)
T 3ulq_A 351 ERKNFQ 356 (383)
T ss_dssp HTTCHH
T ss_pred HCCCHH
Confidence 877633
No 97
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.78 E-value=6.6e-19 Score=130.93 Aligned_cols=124 Identities=14% Similarity=0.029 Sum_probs=85.7
Q ss_pred HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 86 CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 86 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
.+.+++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45555666666667777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
+.+++.+|.++...|++++|+.+|++++.++|+++........+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 77777777777777777777777777777777665544443333
No 98
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-17 Score=121.25 Aligned_cols=98 Identities=10% Similarity=0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
..+..+|..+...|++++|+..|+++++.+|+++.+|.++|.++...|++++|+.+|++++.++|+++.+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCcHHHHHHHHHHHhccc
Q 022205 213 LGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~ 233 (301)
+|+ +++|+..|+++++++
T Consensus 85 ~~~---~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKE---YASALETLDAARTKD 102 (126)
T ss_dssp TTC---HHHHHHHHHHHHHHH
T ss_pred HhC---HHHHHHHHHHHHHhC
Confidence 555 555555555555555
No 99
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=4.5e-17 Score=147.03 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=158.6
Q ss_pred CchhHHHHHHHHHHHHh-------CCChH-------HHHHHHHHHHH-hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMD-------CQCLD-------VAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 124 (301)
.|..+.+|..+|..+.. .|+++ +|+.++++++. ..|++..+|..+|.++...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56778888888888775 79987 99999999997 78999999999999999999999999999999
Q ss_pred HhcCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 125 LEDNPLDP-VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 125 l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
+..+|.++ .+|..+|.++...|++++|+.+|+++++..|.+...+...+.+ +...|++++|..+|+++++..|+++.+
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence 99999986 6999999999999999999999999999999888877776665 346899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|..++.++...|+ +++|...|++++...|.
T Consensus 428 ~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 428 VLAYIDYLSHLNE---DNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHTTTTC---HHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCCC---HhhHHHHHHHHHhccCC
Confidence 9999999999999 99999999999998764
No 100
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.9e-18 Score=121.93 Aligned_cols=119 Identities=22% Similarity=0.182 Sum_probs=112.9
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
|..+..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHc
Q 022205 175 IYVSLQMYKQAAFCYEELILSQ------PTVPLYHLAYADVLYTL 213 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 213 (301)
++...|++++|+.+|++++.++ |.+..++..++.+...+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999988876543
No 101
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.77 E-value=4.4e-17 Score=129.05 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
.++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 34566677777777777777777664 22 5667777777777777777777777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 180 QMYKQAAFCYEELILSQPTVP----------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|++++|+.+|++++...|.+. .++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCcc
Confidence 777777777777777666554 677777777777777 77777777777777775
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.2e-17 Score=152.14 Aligned_cols=149 Identities=9% Similarity=-0.046 Sum_probs=141.9
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.+|....++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|++..++..+
T Consensus 18 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 97 (568)
T 2vsy_A 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97 (568)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---ccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL---QMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..|++++..+|.+...+..++
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 99999999999999999999999999999999999999999 9999999999999999999887777766
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.77 E-value=2.9e-17 Score=130.10 Aligned_cols=154 Identities=16% Similarity=0.038 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+..+|..++..|++++|+..+++++ +.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34457788999999999999999999985 337889999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADH----------------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+.+|++++.++|++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR------ 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG------
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc------
Confidence 999999999999999999888766 9999999999999999999999999999999862
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
.+. .+.|+..+.+.....|
T Consensus 156 ------~~~---~~~a~~~~~~~~~~~~ 174 (213)
T 1hh8_A 156 ------HSK---IDKAMECVWKQKLYEP 174 (213)
T ss_dssp ------GGH---HHHHHHHHHTTCCCCC
T ss_pred ------cch---HHHHHHHHHhcccccc
Confidence 234 6677777766555444
No 104
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.77 E-value=2.2e-16 Score=131.70 Aligned_cols=170 Identities=9% Similarity=-0.008 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh------hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 131 (301)
+....+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+..|++++...+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 34455556678899999999999999999997775544 33357888888899999999999999854332
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC---
Q 022205 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--- 199 (301)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--- 199 (301)
..++..+|.+|...|++++|+.+|+++++.. +..+.+++++|.+|...|++++|+.++++++.+.+..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 3378999999999999999999999999532 2224588999999999999999999999999876433
Q ss_pred ---HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcccC
Q 022205 200 ---PLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 200 ---~~~~~~la~~~~~~~-~~~~~~~A~~~~~~al~~~p 234 (301)
+.++..+|.++..+| + +++|+.+|++|+.+..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~---~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYE---EAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHH
Confidence 789999999999999 5 6999999999998754
No 105
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.76 E-value=1.2e-17 Score=128.65 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcccH--HHHHH
Q 022205 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMY--KQAAF 187 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~~~~--~~A~~ 187 (301)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555555555 4455555 55555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+|++++..+|+++.++..+|.++...|+ +++|+.+|+++++++|+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC
Confidence 5555555555555555555555555555 55555555555555554
No 106
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.76 E-value=2.6e-17 Score=126.69 Aligned_cols=133 Identities=12% Similarity=-0.013 Sum_probs=121.4
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--hH
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNF--PT 150 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~g~~--~~ 150 (301)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
|+..+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.....+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999886544333
No 107
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.76 E-value=5e-17 Score=123.65 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=106.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
++.++..+..+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh--hhHHHHHHHHHhhh
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL--FGICLCSSAIAQLT 255 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~l~~~~~~l~~~~ 255 (301)
.++..+|+ +++|+.+|+++++++|+ +..++ .++..+...+.+..
T Consensus 87 ~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 87 LARFDMAD---YKGAKEAYEKGIEAEGN-GGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999996 66644 45555666666544
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.76 E-value=6.1e-16 Score=130.27 Aligned_cols=193 Identities=11% Similarity=0.011 Sum_probs=169.8
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.|+...++..+.......+..++|+.++.+++..+|++..+|..++.++...| .+++++..+..++..+|.+..+|...
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34445555555555555566689999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHc-C-ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHH--------HHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 139 VAIAKAQ-G-NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK--------QAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 139 ~~~~~~~-g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ +++.++.+++..+|.|..+|...+.
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~ 209 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998 8 9999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred HHHHcCCC----CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 209 VLYTLGGV----DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 209 ~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
++...+.. ..+++++.++.+++.++|+ +..+|+.+.-+....+.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 99988751 1268999999999999996 99999776665555443
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.76 E-value=7.3e-17 Score=122.29 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=88.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34556666666666777777777777766666666667777777777777777777777777777777777777777777
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYA--DVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
..|++++|+.+|++++..+|.++.++..++ ..+...|+ +++|+..+.++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 777777777777777777776666653333 33566666 77777776665544
No 110
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.76 E-value=2.7e-18 Score=134.91 Aligned_cols=146 Identities=14% Similarity=0.003 Sum_probs=94.2
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----------------VLHKRR 138 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l 138 (301)
...|+++.+...+.......+.....+..+|.++...|++++|+..|++++...|.++ .++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3445566665555554444445556666677777777777777777777777666665 666677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCc
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 218 (301)
|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.++...++
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--- 171 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE--- 171 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHHHH
Q 022205 219 ILLAK 223 (301)
Q Consensus 219 ~~~A~ 223 (301)
..++.
T Consensus 172 ~~~~~ 176 (198)
T 2fbn_A 172 ARKKD 176 (198)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 55444
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.75 E-value=1.7e-16 Score=132.40 Aligned_cols=170 Identities=9% Similarity=0.000 Sum_probs=144.7
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 131 (301)
.....+...+..++..|++++|+..+.+++...|... ..++.+|.++...|++++|+..+++++...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3444556778889999999999999999999877543 345678889999999999999999999865443
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHH---HhcCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC----
Q 022205 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYL---ETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPT---- 198 (301)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l---~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---- 198 (301)
..++..+|.+|...|++++|+.+|++++ +..|++. .+++++|.+|...|++++|+.++++++.+.+.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 5589999999999999999999999999 5566643 68999999999999999999999999987542
Q ss_pred --CHHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHhcccC
Q 022205 199 --VPLYHLAYADVLYTLGGVDNILLA-KKYYASTIDLTG 234 (301)
Q Consensus 199 --~~~~~~~la~~~~~~~~~~~~~~A-~~~~~~al~~~p 234 (301)
...++.++|.++..+|+ +++| ..+|++++.+..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFD 268 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHH
Confidence 26789999999999999 9999 888999998754
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=3.7e-17 Score=141.25 Aligned_cols=167 Identities=11% Similarity=-0.054 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP 132 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 132 (301)
.+...|..++..|++++|+..+++++...+ ....++..+|.++...|+++.|+..+++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 455779999999999999999999998643 34568899999999999999999999999985432 24
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh-----hCCCCHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELIL-----SQPTVPL 201 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~ 201 (301)
.++..+|.++...|++++|+..|+++++..+. ...++.++|.+|...|++++|+.+|++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57889999999999999999999999987542 245789999999999999999999999998 7788889
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
++..+|.++...|+ +++|+.++++++++.+.
T Consensus 263 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 263 VLFGLSWTLCKAGQ---TQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999998654
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=2.3e-17 Score=136.92 Aligned_cols=180 Identities=6% Similarity=-0.151 Sum_probs=141.7
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
|.....+..+|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
++...|++++|+..|+++++.+|+++..+......... ..++...........|.++.+...++.+. .|+ ++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~---~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAE---RE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH---HH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH---HH
Confidence 99999999999999999999999764322212222111 12222233333455677777777776654 577 88
Q ss_pred HHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 221 LAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 221 ~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
+|++.|+++++++|+ +......+.....
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEA 180 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHH
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHH
Confidence 888888888888885 6555555544333
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.75 E-value=2.4e-16 Score=119.42 Aligned_cols=134 Identities=13% Similarity=-0.024 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
.....+..+|..++..|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcccHHHHHHHHHHHHhh
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~ 195 (301)
+...|++++|+..|++++..+|.++.++..++.+ +...|++++|+.++.++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999988555544 88899999999999987654
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2e-18 Score=156.39 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHh
Q 022205 24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC----------LDVAKDCIKVLQKQ 93 (301)
Q Consensus 24 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~~~~ 93 (301)
+...+...+. .....++++.....++.. +|+...+|...+.+....|+ +++++.++++++..
T Consensus 31 ~~~~~~~~~~-~~~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 102 (567)
T 1dce_A 31 ATQAVFQKRQ-AGELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102 (567)
T ss_dssp HHHHHHHHHH-TTCCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence 3344444333 345667788888888866 89999999999999888888 99999999999999
Q ss_pred CCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCCHHHHH
Q 022205 94 FPESKRVGRLEGILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTAIEWLNKYLETFMADHDAWR 170 (301)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~ 170 (301)
+|++..+|..++.++...+ ++++++..+.++++.+|.+..+|...+.+....| .+++++.++.++++.+|.+..+|.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 9999999999999999999 7799999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHc--------------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH------------HHH
Q 022205 171 ELAEIYVSL--------------QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL------------AKK 224 (301)
Q Consensus 171 ~lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~------------A~~ 224 (301)
..|.++... +.+++|++++.+++.++|++..+|+.++.++...++ +++ |+.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~---~~~~~~~~~~~~~~~~~~ 259 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP---HDVLCCVHVSREEACLSV 259 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC---CSCEEEEEEETTTTEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC---ccceeeeeeccCCceEEE
Confidence 999999885 778999999999999999999999999999999888 655 666
Q ss_pred HHHHHhcccCC
Q 022205 225 YYASTIDLTGG 235 (301)
Q Consensus 225 ~~~~al~~~p~ 235 (301)
+|.+++.++|.
T Consensus 260 ~f~~~i~~~~~ 270 (567)
T 1dce_A 260 CFSRPLTVGSR 270 (567)
T ss_dssp EEEEEECTTBT
T ss_pred Eeccceecccc
Confidence 78888887764
No 116
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.75 E-value=1.2e-16 Score=138.14 Aligned_cols=220 Identities=9% Similarity=-0.097 Sum_probs=172.2
Q ss_pred HhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC-------chhhHHHHH
Q 022205 33 KLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-------SKRVGRLEG 105 (301)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------~~~~~~~~a 105 (301)
....++.+.++......+...... .-.+....++..+|.++...|+++.|+.++.+++..++. ...++..+|
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 345677777877777766442111 113467788999999999999999999999999987652 245678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----hcCCCHHHHHHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLEDNP------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-----TFMADHDAWRELAE 174 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~lg~ 174 (301)
.++...|++++|+..|++++...+ ....++.++|.++...|++++|+.++++++. .+|..+.++..+|.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 999999999999999999998532 2245889999999999999999999999999 78888899999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQP-----TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
++...|++++|+.++++++.+.+ .....+..++.++...++.+.+.+|+.++++. ...|. ....+..++.++.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~-~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAY-IEACARSAAAVFE 347 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHH-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhH-HHHHHHHHHHHHH
Confidence 99999999999999999998854 33445666777777776644467777777762 23332 5566678888888
Q ss_pred HHHhhh
Q 022205 250 AIAQLT 255 (301)
Q Consensus 250 ~l~~~~ 255 (301)
..++..
T Consensus 348 ~~g~~~ 353 (378)
T 3q15_A 348 SSCHFE 353 (378)
T ss_dssp HTTCHH
T ss_pred HCCCHH
Confidence 877643
No 117
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-17 Score=118.56 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333444443344
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (301)
++++|+.+|++++..+|.+..++..++.++.
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 99 DYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 4444444444443333333333333333333
No 118
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=2e-15 Score=134.94 Aligned_cols=173 Identities=14% Similarity=-0.001 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205 64 WTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLH 135 (301)
Q Consensus 64 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 135 (301)
+..+..+|..+.. .+++++|+.+++++... .++.+++.+|.++.. .+++++|+.+|+++.+. .++.++
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~ 294 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQ 294 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHH
Confidence 4455556666664 56666666666666653 445566666666666 66677777777766554 456666
Q ss_pred HHHHHHHHHc-----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 136 KRRVAIAKAQ-----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 136 ~~l~~~~~~~-----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
+.+|.++... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++. .++.+++.+|
T Consensus 295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg 370 (490)
T 2xm6_A 295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLG 370 (490)
T ss_dssp HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 6677776666 6677777777766654 35666667777766644 666777777777665 4566677777
Q ss_pred HHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 208 DVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 208 ~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
.+|.. .++ +++|+.+|+++++.. +..+++.++.++..
T Consensus 371 ~~y~~g~g~~~~---~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 371 NALLQGKGVKKD---EQQAAIWMRKAAEQG---LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHTSSSCCC---HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCC---HHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 77666 555 777777777766642 45566666666654
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.74 E-value=8.1e-17 Score=127.94 Aligned_cols=167 Identities=11% Similarity=-0.120 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
.++.++..+|..+...+++++|+.+|+++.+ +.++.+++.+|.++.. + ++++|+.+|+++.. +.++.+++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 4577888999999999999999999999987 4688999999999998 7 99999999999965 568999999
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 138 RVAIAKA----QGNFPTAIEWLNKYLETFM--ADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 138 l~~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
+|.+|.. .+++++|+.+|+++++..| .++.+++.||.+|.. .+++++|+.+|++++.. |.++.+++.+|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg 169 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAG 169 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 9999998 8999999999999999887 348999999999999 88999999999999998 77788999999
Q ss_pred HHHHHc-C--CCCcHHHHHHHHHHHhcccC
Q 022205 208 DVLYTL-G--GVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 208 ~~~~~~-~--~~~~~~~A~~~~~~al~~~p 234 (301)
.+|... | -..++++|+.+|+++++..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999865 3 12239999999999998854
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.74 E-value=8.2e-17 Score=135.27 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCC------chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C---
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--D--- 131 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~--- 131 (301)
....|...+.++...|++++|+..+.+++...+. ...++..+|.++...|++++|+.+|++++...+. +
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4556777788999999999999999999987652 2457888999999999999999999999986432 2
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205 132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----- 199 (301)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 199 (301)
..++..+|.+|.. |++++|+.+|++++.+.|.. ..++.++|.++...|++++|+.+|++++.+.|.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 4588899999999 99999999999999998754 5788999999999999999999999999986644
Q ss_pred -HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 200 -PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 200 -~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..++..+|.++..+|+ +++|+.+|++++ ++|.
T Consensus 194 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCC
Confidence 3478889999999999 999999999999 9996
No 121
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.74 E-value=6.5e-18 Score=132.69 Aligned_cols=154 Identities=14% Similarity=0.011 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------------
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------- 166 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------- 166 (301)
.....+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344456666778888888888877777777788999999999999999999999999999999887
Q ss_pred ---HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhh
Q 022205 167 ---DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFG 243 (301)
Q Consensus 167 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 243 (301)
.++.++|.++...|++++|+.+|++++.++|+++.+++.+|.++..+|+ +++|+.+|+++++++|+ +..++..
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~ 161 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPN-NLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 8999999999999999999999999999999999999999999999999 99999999999999996 9999999
Q ss_pred HHHHHHHHHhhhcc
Q 022205 244 ICLCSSAIAQLTKG 257 (301)
Q Consensus 244 l~~~~~~l~~~~~~ 257 (301)
++.++..+++..+.
T Consensus 162 l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 162 YELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998875543
No 122
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.74 E-value=8.3e-17 Score=116.63 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
...|++++|+.+|++++..+|+++.++..+|.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555544
No 123
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.74 E-value=5.7e-17 Score=123.33 Aligned_cols=114 Identities=20% Similarity=0.143 Sum_probs=85.4
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
+.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+|+.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
++...|++++|+.+|++++.++|+++.++...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 7777777777777777777777777665555443
No 124
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=7.7e-15 Score=131.10 Aligned_cols=173 Identities=12% Similarity=0.063 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHh----CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 022205 64 WTLYEQVSIAAMD----CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLDPVLH 135 (301)
Q Consensus 64 ~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 135 (301)
...+..+|..+.. .+++++|+.+++++.. ++++.+++.+|.+|.. .+++++|+.+|++++.. .++.++
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE--QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3444455555555 4555555555555544 2345555555555554 45555555555555543 345555
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 136 KRRVAIAKA----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 136 ~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
..+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|++++.. .++.+++.+|
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 262 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLG 262 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 555555555 55555555555555543 244555555555554 45555555555555443 3445555555
Q ss_pred HHHHH----cCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 208 DVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 208 ~~~~~----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
.++.. .++ +++|+.+|+++++.. +..+++.++.++..
T Consensus 263 ~~y~~g~~~~~d---~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 263 YILEQGLAGAKE---PLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTTTSSCC---HHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCC---HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 55554 444 555555555555431 34455555554443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=3.6e-16 Score=141.62 Aligned_cols=179 Identities=11% Similarity=-0.001 Sum_probs=162.9
Q ss_pred HHhCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 74 AMDCQCL-DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 74 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....|++ ++|+..+++++..+|++..+|..++.++...|+ +++++..+.+++..+|.+..+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445554 678999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC---
Q 022205 143 KAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV--- 216 (301)
Q Consensus 143 ~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--- 216 (301)
...| ++++++..+.++++.+|.+..+|...+.+....| .+++++.++.++++.+|.+..+|...+.++..+++.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 6699999999999999999999999999999999 999999999999999999999999999999986221
Q ss_pred --------CcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 217 --------DNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 217 --------~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+.+++|++++.+++.++|+ +..+|+.+..+....+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 2389999999999999996 88999888877765443
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.73 E-value=2.2e-16 Score=114.31 Aligned_cols=125 Identities=11% Similarity=-0.033 Sum_probs=119.4
Q ss_pred cCCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
..+|.....+..+|..++..|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~ 182 (301)
+|.++...|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988875
No 127
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=7.7e-16 Score=136.26 Aligned_cols=173 Identities=12% Similarity=-0.013 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 66 LYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 66 ~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
++..+|.++...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 7888999999999 999999999999999998888889999999765 79999999999998 8999999999
Q ss_pred HHH-H--HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 139 VAI-A--KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-----MYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 139 ~~~-~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
|.+ + ...+++++|+.+|+++.+. .++.++++||.+|. .| ++++|+.+|+++. |.++.+++++|.+|
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 998 4 5689999999999999865 58999999999998 55 9999999999998 89999999999988
Q ss_pred HHc-CCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 211 YTL-GGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 211 ~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
..- |-..++++|+.+|+++.+. + +..+++.|+.++..
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~--g-~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN--G-QNSADFAIAQLFSQ 366 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT--T-CTTHHHHHHHHHHS
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh--C-hHHHHHHHHHHHHh
Confidence 872 1122399999999999874 2 67788888887764
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-16 Score=116.12 Aligned_cols=122 Identities=21% Similarity=0.195 Sum_probs=115.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
..|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
|.++...|+ +++|+.+|++++.++|. +..+++.++.++...+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 999999999 99999999999999996 8899999998887654
No 129
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.73 E-value=1.2e-15 Score=128.02 Aligned_cols=172 Identities=12% Similarity=0.018 Sum_probs=155.6
Q ss_pred HHHHhCCChH-HHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 022205 72 IAAMDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLEAKGL----------WAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (301)
Q Consensus 72 ~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~ 140 (301)
......|+++ +|+.++..++..+|++..+|..++.++...+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345667776 79999999999999999999999999988776 789999999999999999999999999
Q ss_pred HHHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCC-
Q 022205 141 IAKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM-YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV- 216 (301)
Q Consensus 141 ~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~- 216 (301)
++...|+ +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.|..+|...+.++...+..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999995 8999999999999999999999999999999998 69999999999999999999999999999887210
Q ss_pred ----------CcHHHHHHHHHHHhcccCCCchhHhhhH
Q 022205 217 ----------DNILLAKKYYASTIDLTGGKNTKALFGI 244 (301)
Q Consensus 217 ----------~~~~~A~~~~~~al~~~p~~~~~~~~~l 244 (301)
+.++++++++.+++..+|+ +..+|+.+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~ 233 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYH 233 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 2389999999999999996 88888644
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=3.2e-16 Score=133.31 Aligned_cols=136 Identities=13% Similarity=-0.025 Sum_probs=128.4
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc---------------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---------------KRVGRLEGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 124 (301)
.|.....+..+|..++..|++++|+..|++++...|.+ ..++..+|.++...|++++|+..|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778899999999999999999999999999999988 589999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHH-HHHHHHHHhh
Q 022205 125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA-AFCYEELILS 195 (301)
Q Consensus 125 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~ 195 (301)
+..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++| ...|++++..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 5567777643
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=1.1e-15 Score=128.68 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=169.7
Q ss_pred cHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHhCCCchhhH
Q 022205 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG 101 (301)
Q Consensus 23 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 101 (301)
.++.+++....... .++.++.....++.. +|++.++|...+.++...| .+++++.+++.++..+|++..+|
T Consensus 55 ~~~~~~r~~~~~~e-~se~AL~lt~~~L~~-------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW 126 (349)
T 3q7a_A 55 DAMDYFRAIAAKEE-KSERALELTEIIVRM-------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126 (349)
T ss_dssp HHHHHHHHHHHTTC-CSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHh-------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHH
Confidence 46777777766655 455688888888866 8999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHHhcCCCHHHHHH
Q 022205 102 RLEGILLEAK-G-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP--------TAIEWLNKYLETFMADHDAWRE 171 (301)
Q Consensus 102 ~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~ 171 (301)
..++.++... + ++++++.++.+++..+|.+..+|...+.+....|.++ +++.++.++++.+|.+..+|..
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~ 206 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999998 7 9999999999999999999999999999999999888 9999999999999999999999
Q ss_pred HHHHHHHccc-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 172 LAEIYVSLQM-------YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 172 lg~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
.+.++...+. +++++.++.+++.++|++..+|..+..++...|+
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999886 7999999999999999999999999999888887
No 132
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.5e-15 Score=136.99 Aligned_cols=174 Identities=9% Similarity=-0.065 Sum_probs=159.1
Q ss_pred CCchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
..|+...+|..++..+...|++++|..+|++++...|.++ .+|...|.++.+.|++++|...|++++...|.....+..
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 4678889999999999999999999999999999999875 689999999999999999999999999999988887777
Q ss_pred HHHH-HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHH
Q 022205 138 RVAI-AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYT 212 (301)
Q Consensus 138 l~~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~ 212 (301)
.+.+ +...|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|..++.....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 6665 346899999999999999999999999999999999999999999999999998776654 88888888889
Q ss_pred cCCCCcHHHHHHHHHHHhcccCC
Q 022205 213 LGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.|+ .+.+..++.++++..|+
T Consensus 476 ~G~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 476 IGD---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp SSC---HHHHHHHHHHHHHHTHH
T ss_pred cCC---HHHHHHHHHHHHHHCch
Confidence 999 99999999999999984
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.72 E-value=7.1e-16 Score=110.69 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
..|++++|+.+|++++..+|+++.++..+|.++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666555443
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.72 E-value=5e-16 Score=114.04 Aligned_cols=122 Identities=9% Similarity=-0.036 Sum_probs=99.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
.+|.++..+..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.++|+++.++..+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46777888888899999999999999999999999998888899999999999999999999999999999988899999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCC----chhHhhhHHHHHHHH
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGK----NTKALFGICLCSSAI 251 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~l~~~~~~l 251 (301)
|.++...|+ +++|+.+|++++.++|+. +...+..+..+....
T Consensus 84 ~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 84 GQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 999999999999888741 344444444444443
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.72 E-value=2.5e-16 Score=125.06 Aligned_cols=158 Identities=11% Similarity=0.017 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChhHHHHHHH
Q 022205 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLN 156 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 156 (301)
.+|+..|+++.+. .++.+++.+|.++...+++++|+.+|++++.. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888874 78999999999999999999999999999875 579999999999998 7 8999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCCCcHHHHHHHH
Q 022205 157 KYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYT----LGGVDNILLAKKYY 226 (301)
Q Consensus 157 ~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~~~~A~~~~ 226 (301)
++.+ +.++.+++.||.+|.. .+++++|+.+|++++...| .++.+++.+|.+|.. .++ +++|+.+|
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 9965 6789999999999998 8899999999999999988 358999999999998 677 99999999
Q ss_pred HHHhcccCCCchhHhhhHHHHHHH
Q 022205 227 ASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 227 ~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
++++++ |+ +..+++.|+.++..
T Consensus 153 ~~A~~~-~~-~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 153 KGSSSL-SR-TGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHT-SC-TTHHHHHHHHHHHH
T ss_pred HHHHHc-CC-CHHHHHHHHHHHHc
Confidence 999998 53 77789999988865
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.72 E-value=1.8e-16 Score=115.36 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRE 171 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~ 171 (301)
.++..+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++ .++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555554432 24445
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 172 LAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
+|.++...|++++|+.+|++++...|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 55555555555555555555555544
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.71 E-value=1.3e-16 Score=116.05 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-------HHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-------LYH 203 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~ 203 (301)
.+.++..+|..++..|++++|+..|+++++++|+++.+|.++|.+|...|++++|+..|+++++++|+++ .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3557889999999999999999999999999999999999999999999999999999999999987653 478
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.++|.++..+|+ +++|+.+|++++...|+
T Consensus 87 ~~lg~~~~~~~~---~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQND---LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHhhCcC
Confidence 899999999999 99999999999998885
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.71 E-value=1.9e-16 Score=117.78 Aligned_cols=114 Identities=14% Similarity=0.059 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------C-----HHHHHHHHHHHHHcccHHHHHHHHHHHHhh------
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-------D-----HDAWRELAEIYVSLQMYKQAAFCYEELILS------ 195 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-------~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------ 195 (301)
.+...|..++..|++++|+..|+++++.+|+ + ..+|.++|.++..+|+|++|+.+|.+++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4455566666666666666666666666665 3 349999999999999999999999999999
Q ss_pred -CCCCHHHH----HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 196 -QPTVPLYH----LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 196 -~p~~~~~~----~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
+|+++.+| +++|.++..+|+ +++|+..|+++++++|+ +....-.+..+...+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~-d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEE-RKGETPGKERMMEVA 149 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH-CCSCCTTHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH
Confidence 99999999 999999999999 99999999999999996 666665665554443
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.71 E-value=1.4e-17 Score=147.66 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=125.2
Q ss_pred CCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---------------PVLHKRRVAI 141 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~ 141 (301)
.+++++|+..+..++...|.....+..+|.+++..|+|++|+..|++++..+|.+ ..++.++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777778888889999999999999999999999999988888 6788899999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
+..+|++++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..++.++..+++ +++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999988888 877
Q ss_pred HHHH-HHHHh
Q 022205 222 AKKY-YASTI 230 (301)
Q Consensus 222 A~~~-~~~al 230 (301)
|... |.+.+
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 6643 44433
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.71 E-value=2.6e-16 Score=113.46 Aligned_cols=99 Identities=19% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cHHHHHHHHHHHHhhCCCC
Q 022205 181 MYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~ 199 (301)
++++|+.+|++++.++|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555544
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.71 E-value=2.9e-16 Score=115.34 Aligned_cols=120 Identities=16% Similarity=0.009 Sum_probs=93.8
Q ss_pred hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH
Q 022205 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 172 (301)
..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+|+.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPT-----VPLYHLAYADVLYT 212 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~ 212 (301)
|.++...|++++|+.+|++++.++|+ +..+...+..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887776 55555555555443
No 142
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.70 E-value=5.7e-16 Score=117.48 Aligned_cols=119 Identities=9% Similarity=0.005 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLET------------------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.+...|..++..|++++|+..|.+++.. +|.++.+|+++|.++...|++++|+.++++++.+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555 6777889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch-hHhhhHHHHHHHHHhhhc
Q 022205 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT-KALFGICLCSSAIAQLTK 256 (301)
Q Consensus 196 ~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~l~~~~~~l~~~~~ 256 (301)
+|+++.+++.+|.++..+|+ +++|+..|++++.++|+ +. .....+..+...+.+...
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~-~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPA-AASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999996 66 556677777777766443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.70 E-value=2.7e-16 Score=123.29 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=140.7
Q ss_pred HHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCC
Q 022205 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE------DNPLDPVLHKRRVAIAKAQGN 147 (301)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~ 147 (301)
.+..|++++|...++.+....+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 35679999999966555543336788999999999999999999999999998 445566789999999999999
Q ss_pred hhHHHHHHHHHHHh---cCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcC
Q 022205 148 FPTAIEWLNKYLET---FMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TV----PLYHLAYADVLYTLG 214 (301)
Q Consensus 148 ~~~A~~~~~~~l~~---~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~ 214 (301)
+++|+..+++++.. .+++ ..++..+|.++...|++++|+.++++++.+.+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999999988 4433 45788999999999999999999999997642 22 235689999999999
Q ss_pred CCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
+ +++|..++++++++... ....++.+.+...++..
T Consensus 162 ~---~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 162 N---LLEAQQHWLRARDIFAE--LEDSEAVNELMTRLNGL 196 (203)
T ss_dssp C---HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTT
T ss_pred C---HHHHHHHHHHHHHHHHH--cCCHHHHHHHHhcccch
Confidence 9 99999999999998663 33345666666666653
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.70 E-value=1.2e-15 Score=108.31 Aligned_cols=109 Identities=19% Similarity=0.160 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 179 (301)
.+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (301)
|++++|+.+|++++..+|+++.++..++.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44444444444444444444444444443
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.70 E-value=1.8e-15 Score=108.52 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=111.2
Q ss_pred CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 128 NPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 128 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
+|.. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 5555 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 207 a~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
|.++...|+ +++|..+|++++..+|+ +..++..++.++...
T Consensus 84 a~~~~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 84 GNAYYKQGD---YDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 999999999 99999999999999996 888999888877654
No 146
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.69 E-value=2.1e-17 Score=146.41 Aligned_cols=142 Identities=13% Similarity=0.184 Sum_probs=130.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---------------HHHHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---------------HDAWRELAE 174 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg~ 174 (301)
..+++++|+..|+.++..+|.....+..+|.+++..|++++|+..|+++++.+|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888899999999999999999999999999999999999998 689999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHhh
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQL 254 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~ 254 (301)
++...|++++|+.+|++++.++|+++.+++++|.++..+|+ +++|+.+|+++++++|+ +..++..++.++..+++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~---~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE---FESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999996 899999999999998874
Q ss_pred h
Q 022205 255 T 255 (301)
Q Consensus 255 ~ 255 (301)
.
T Consensus 402 ~ 402 (457)
T 1kt0_A 402 N 402 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.69 E-value=3.1e-16 Score=113.07 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHhcccCC
Q 022205 214 GGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 214 ~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|+ +++|+..|+++++++|+
T Consensus 99 g~---~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HN---ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred CC---HHHHHHHHHHHHHhCcC
Confidence 99 99999999999999996
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.69 E-value=2.4e-15 Score=106.85 Aligned_cols=114 Identities=16% Similarity=0.049 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205 211 YTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS 248 (301)
Q Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~ 248 (301)
...|+ +++|..+|+++++.+|+ +..++..++.+.
T Consensus 83 ~~~~~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNR---FEEAKRTYEEGLKHEAN-NPQLKEGLQNME 116 (118)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTT-CHHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHcCCC-CHHHHHHHHHhh
Confidence 99999 99999999999999996 888888877654
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.69 E-value=2.1e-17 Score=147.09 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=117.1
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 176 (301)
.+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++++|.+|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556677888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCCCcHHHHHHHHH-----------HHhcccCC
Q 022205 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADV--LYTLGGVDNILLAKKYYA-----------STIDLTGG 235 (301)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~~~~A~~~~~-----------~al~~~p~ 235 (301)
...|++++|+.+|+++++++|+++.++..++.+ +...|+ +++|+..++ +++.++|+
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhcccccc
Confidence 999999999999999999999998888888888 888888 999999999 88888875
No 150
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.68 E-value=3.2e-16 Score=131.62 Aligned_cols=176 Identities=11% Similarity=0.043 Sum_probs=138.0
Q ss_pred CCChHHHHHHHHHHHHhCCC--------c---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQFPE--------S---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRV 139 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~--------~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~ 139 (301)
.|++++|..+++++.+..+. . ...+...|.++...|++++|+..|.+++...+.. ..++..+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555666666655543321 0 1123344778899999999999999999875432 45889999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYA 207 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 207 (301)
.++...|++++|+.+|++++++.+.. ..++.++|.+|.. |++++|+.+|++++.+.|.. ..++.++|
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999986532 4678899999999 99999999999999987643 56889999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcccCCC-----chhHhhhHHHHHHHHHhhhc
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLTGGK-----NTKALFGICLCSSAIAQLTK 256 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~l~~~~~~l~~~~~ 256 (301)
.++..+|+ +++|+.+|++++.+.|.. ...++.+++.++..+++...
T Consensus 163 ~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 163 RLLVRQQK---FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCC---HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999 999999999999987741 13467788888877666443
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.68 E-value=4.2e-16 Score=118.21 Aligned_cols=115 Identities=17% Similarity=0.048 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLED------------------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
.+...|..++..|+|++|+..|++++.. +|.+..++.++|.++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3344444445555555555555555444 5666678888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcC
Q 022205 162 FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP-LYHLAYADVLYTLG 214 (301)
Q Consensus 162 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~ 214 (301)
+|+++.+|+.+|.++...|++++|+.+|++++.++|+++ .+...++.+....+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888887 55666666655443
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-15 Score=111.56 Aligned_cols=115 Identities=22% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (301)
|.+...+..+|..+...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3444455555555555555555555555555555554 5555556666666666666666666666666666666666
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
+|.++...|++++|+.+|++++.++|+++.++..++.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66666666666666666666666666665555555544
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.67 E-value=5.5e-16 Score=115.28 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHh------
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------DP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLET------ 161 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------ 161 (301)
.+...|..++..|+|++|+..|++++..+|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445555566666666666666666666555 33 38888888888888888888888888888
Q ss_pred -cCCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 162 -FMADHDAW----RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 162 -~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999988775543333
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.66 E-value=6e-15 Score=106.99 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELA 173 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg 173 (301)
.++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 455666666667777777777777776666666 566667777777777777777777777777766 66677777
Q ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 022205 174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (301)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (301)
.++...|++++|+..|++++...|+++.+......+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 777777777777777777777777666655555444433
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.66 E-value=4.4e-16 Score=127.14 Aligned_cols=197 Identities=10% Similarity=-0.095 Sum_probs=166.9
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchhHHHHHHH-------HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHH----
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQV-------SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL---- 103 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~---- 103 (301)
.+.+...+.......+.. +|....+|..+ +.++...++..+++..+.+.+.+.|.....++.
T Consensus 18 ~~~d~~~A~~~F~~a~~~-------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHh-------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 467777788777777766 88889999988 778888888889999999999988765544443
Q ss_pred -----------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-C
Q 022205 104 -----------------EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-D 165 (301)
Q Consensus 104 -----------------~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~ 165 (301)
++.++...|+|++|...|..++..+|.+. +.+.+|.++...+++++|+..|+.+....+. .
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 78889999999999999999999999888 9999999999999999999999977664311 1
Q ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHh
Q 022205 166 -HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL 241 (301)
Q Consensus 166 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (301)
..+++.+|.++...|++++|+.+|++++.-. |. .+.+++.+|.++..+|+ .++|...|++++..+|+ ..++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~--~~~~ 244 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE--PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC--HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc--HHHH
Confidence 3589999999999999999999999998544 55 56799999999999999 99999999999999994 5444
Q ss_pred hhH
Q 022205 242 FGI 244 (301)
Q Consensus 242 ~~l 244 (301)
..|
T Consensus 245 ~aL 247 (282)
T 4f3v_A 245 AAL 247 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=6.6e-16 Score=126.13 Aligned_cols=208 Identities=12% Similarity=-0.060 Sum_probs=171.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCHH-------
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE-------GILLEAKGLWAEAEKAYSSLLEDNPLDPV------- 133 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 133 (301)
+..|..+ ..++...|...|.+++..+|+...+|..+ +.++...+++.+++..+++.+...|....
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3445554 68999999999999999999999999999 89999999999999999999997775433
Q ss_pred --------------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 134 --------------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 134 --------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
+...++.++...|++++|...|...+...|.+. ..+.+|.+++..++|++|+.+|+.+....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 445588999999999999999999999999888 99999999999999999999999887643221
Q ss_pred --HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc--CCCchhHhhhHHHHHHHHHhhhccCCcccccchHHHHHHHHH
Q 022205 200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT--GGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAA 275 (301)
Q Consensus 200 --~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (301)
..+++.+|.++..+|+ +++|+.+|++++... |.....+++.+++|+..+|+.. .|...
T Consensus 169 ~~~~a~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d---------------eA~~~ 230 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLAL---FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES---------------AAVAL 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH---------------HHHHH
T ss_pred cHHHHHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH---------------HHHHH
Confidence 3489999999999999 999999999998654 4225678999999999999733 35555
Q ss_pred HHHHHHhhCChhhhHHHHHHhhc
Q 022205 276 LEKDYKQRAPAKLLLLTSALKSL 298 (301)
Q Consensus 276 l~~~~~~~~~~~~~~~~~~~~~~ 298 (301)
+.+++... |+ +++...|..+
T Consensus 231 l~~a~a~~-P~--~~~~~aL~~~ 250 (282)
T 4f3v_A 231 LEWLQTTH-PE--PKVAAALKDP 250 (282)
T ss_dssp HHHHHHHS-CC--HHHHHHHHCT
T ss_pred HHHHHhcC-Cc--HHHHHHHhCC
Confidence 66665544 33 6666666554
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.65 E-value=1.9e-15 Score=106.39 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHH
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLA 205 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 205 (301)
+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++..+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666 6666666
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHhcccCC
Q 022205 206 YADVLYTL-GGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 206 la~~~~~~-~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+|.++... |+ +++|+.++++++...|.
T Consensus 82 l~~~~~~~~~~---~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGK---EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSC---SHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHhhcccC
Confidence 66666666 66 66666666666666653
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.65 E-value=1.9e-15 Score=106.34 Aligned_cols=107 Identities=13% Similarity=0.164 Sum_probs=103.5
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHH
Q 022205 94 FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRE 171 (301)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~ 171 (301)
+|+++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|. ++.++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-ccHHHHHHHHHHHHhhCCCCH
Q 022205 172 LAEIYVSL-QMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 172 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~ 200 (301)
+|.++... |++++|+.++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999998753
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-15 Score=108.80 Aligned_cols=118 Identities=13% Similarity=-0.035 Sum_probs=109.9
Q ss_pred hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Q 022205 126 EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (301)
Q Consensus 126 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 202 (301)
..+|.+...+..+|..+...|++++|+..|+++++.+|++ +.++..+|.++...|++++|+.+|++++..+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3567889999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC 247 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~ 247 (301)
+..+|.++...|+ +++|+.+|++++.++|+ +..++..+..+
T Consensus 102 ~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGR---LDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTC---HHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 9999999999999 99999999999999996 77777666543
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.64 E-value=7e-15 Score=106.41 Aligned_cols=116 Identities=13% Similarity=0.046 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLA 205 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~ 205 (301)
..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555555555555555555555554443 445555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 206 YADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 206 la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+|.++...|+ +++|+.+|+++++..| +...+..++.+...+++
T Consensus 85 la~~~~~~~~---~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 85 IGNSYFKEEK---YKDAIHFYNKSLAEHR--TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHH
Confidence 5555555555 5555555555555544 24444444444444443
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.64 E-value=6.1e-15 Score=106.72 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=110.8
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HD 167 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~ 167 (301)
|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|.+ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
+++.+|.++...|++++|+.+|++++...| ++..+..++.+....++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68888888887765543
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=1.7e-13 Score=117.74 Aligned_cols=216 Identities=10% Similarity=-0.040 Sum_probs=159.3
Q ss_pred hccCChHHHHHHHHHHhcCCCCcCcCCc-hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHH
Q 022205 34 LKVRRPDKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGI 106 (301)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~ 106 (301)
....+.+.+.......+... . ..++ ....++..+|.++...|++++|...+.+++...|... .++..+|.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL--P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC--C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC--C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34566777777777666541 1 1112 1334677889999999999999999999998765322 33677899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHH
Q 022205 107 LLEAKGLWAEAEKAYSSLLEDN--------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELA 173 (301)
Q Consensus 107 ~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~lg 173 (301)
++...|++++|+..+++++... |....++..+|.++...|++++|...+++++...|.. ..++..+|
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 9999999999999999998854 3345577889999999999999999999999987653 46788999
Q ss_pred HHHHHcccHHHHHHHHHHHHhhCC--CCHHHHH-----HHHHHHHHcCCCCcHHHHHHHHHHHhcccCCC-c--hhHhhh
Q 022205 174 EIYVSLQMYKQAAFCYEELILSQP--TVPLYHL-----AYADVLYTLGGVDNILLAKKYYASTIDLTGGK-N--TKALFG 243 (301)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~--~~~~~~ 243 (301)
.++...|++++|..++++++.+.+ ..+..+. ..+.++...|+ +++|..++++++...|.. . ...+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD---KAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC---HHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 999999999999999999987632 2211111 34456888999 999999999999877641 1 223455
Q ss_pred HHHHHHHHHhhh
Q 022205 244 ICLCSSAIAQLT 255 (301)
Q Consensus 244 l~~~~~~l~~~~ 255 (301)
++.++...++..
T Consensus 259 la~~~~~~g~~~ 270 (373)
T 1hz4_A 259 IARAQILLGEFE 270 (373)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHHcCCHH
Confidence 666666555533
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.63 E-value=3e-16 Score=133.60 Aligned_cols=153 Identities=10% Similarity=-0.037 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+..+|..++..|++++|+..|++++...|++.. +...+++.++...+. ..++.++|.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4455566666666666666666666666666665431 112233333333221 13789999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCCCcHHH
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY-TLGGVDNILL 221 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~~~~ 221 (301)
...|++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+.+|++++.++|+++.++..++.+.. ..+. .+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998844 4456 788
Q ss_pred HHHHHHHHhcccCC
Q 022205 222 AKKYYASTIDLTGG 235 (301)
Q Consensus 222 A~~~~~~al~~~p~ 235 (301)
+...|.+++...|+
T Consensus 318 a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 318 QKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------
T ss_pred HHHHHHHhhCCCCC
Confidence 89999999999885
No 164
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.62 E-value=3.2e-15 Score=110.88 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF----------PTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
.+.|++|+..+++++..+|+++.+|.++|.++...+++ ++|+..|+++++++|+++.+|+++|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34566666666666666666666666666666666554 47777777777777777777777777776654
Q ss_pred -----------cHHHHHHHHHHHHhhCCCCHH
Q 022205 181 -----------MYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 181 -----------~~~~A~~~~~~al~~~p~~~~ 201 (301)
++++|+.+|++|++++|++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 666666666666666666543
No 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.62 E-value=2.5e-16 Score=140.21 Aligned_cols=137 Identities=14% Similarity=-0.005 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 142 (301)
....+..+|..++..|++++|+..++++++.+|+++.++..+|.++..+|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455667788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--HHHcccHHHHHHHHH-----------HHHhhCCCC
Q 022205 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEI--YVSLQMYKQAAFCYE-----------ELILSQPTV 199 (301)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~ 199 (301)
..+|++++|+..|+++++.+|+++.++..++.+ +...|++++|+..++ +++.++|+.
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999999999998 889999999999999 888777654
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=4.6e-14 Score=117.58 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=131.1
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD--- 165 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~--- 165 (301)
|.....+...+..+...|++++|+..+.+++...|.... .+..+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 344455667788899999999999999999998876543 45678899999999999999999999876544
Q ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 166 ---HDAWRELAEIYVSLQMYKQAAFCYEELI---LSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 166 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..++..+|.+|...|++++|+.+|++++ ...|++. .++.++|.+|..+|+ +++|+.+|++++++.+.
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999 5566643 589999999999999 99999999999988652
Q ss_pred -----CchhHhhhHHHHHHHHHh
Q 022205 236 -----KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 236 -----~~~~~~~~l~~~~~~l~~ 253 (301)
....+++.+|.++..+++
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTC
T ss_pred cCcHHHHHHHHHHHHHHHHHcCC
Confidence 126677888888888876
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=4.7e-14 Score=121.31 Aligned_cols=168 Identities=15% Similarity=0.018 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP------ 132 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------ 132 (301)
..++..+|..++..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44566778889999999999999999999887543 2567889999999999999999999998654332
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-----
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----- 199 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 199 (301)
.++..+|.++...|++++|+..+++++...+ ....++..+|.++...|++++|..++++++.+.|..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 3477899999999999999999999998763 335677889999999999999999999999987753
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 200 ~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
..++..+|.++...|+ +++|..++++++.+.+
T Consensus 174 ~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGD---LDNARSQLNRLENLLG 205 (373)
T ss_dssp HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHh
Confidence 4678899999999999 9999999999998754
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.61 E-value=5.2e-14 Score=101.99 Aligned_cols=115 Identities=13% Similarity=0.031 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRV 139 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~ 139 (301)
.+..+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 456789999999999999999999999999888 799999999999999999999999999999999 88999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
.++...|++++|+..|++++..+|+++.+......+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887766655544333
No 169
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.61 E-value=1.3e-15 Score=129.71 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH-H
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY-V 177 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~-~ 177 (301)
.++..+|.++...|++++|+..|++++..+|++..+++++|.++...|++++|+..|+++++++|+++.++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HcccHHHHHHHHHHHHhhCCCCHH
Q 022205 178 SLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
..+..+.+...|.+++...|.++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788999999999999987754
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.61 E-value=3e-15 Score=111.06 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=88.8
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY----------KQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (301)
+.+.+++|+..++++++++|+++.+|+++|.++...+++ ++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445689999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CCCcHHHHHHHHHHHhcccCCCchhHhhhHHH
Q 022205 214 G-----------GVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (301)
Q Consensus 214 ~-----------~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~ 246 (301)
| + +++|+.+|++|++++|+ +...+..+..
T Consensus 94 g~l~P~~~~a~g~---~~eA~~~~~kAl~l~P~-~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHN---FDLATQFFQQAVDEQPD-NTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHH---HHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cccCcchhhhhcc---HHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 5 7 99999999999999996 6655544443
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.60 E-value=1.8e-15 Score=108.32 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 111 KGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 111 ~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
+|++++|+..|++++.. +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777777776 466666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCCHHHHH
Q 022205 188 CYEELILSQPTVPLYHL 204 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~ 204 (301)
+|++++...|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 77777777777666543
No 172
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=5.9e-14 Score=124.13 Aligned_cols=178 Identities=13% Similarity=0.034 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l 138 (301)
.+.++..+|..+...+.++.+........+.. +.++.+++.+|.++...| ++++|+.+|+++...+|.....++.+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567778888888886655554433333221 345559999999999999 99999999999999999999999999
Q ss_pred HHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHH-H--HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205 139 VAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEI-Y--VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (301)
Q Consensus 139 ~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (301)
|.+|... +++++|+.+|+++. |.++.+++.||.+ + ...+++++|+.+|+++... .++.+++.+|.+|.
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 9999765 79999999999998 8999999999999 4 4689999999999999864 58999999999998
Q ss_pred HcCC--CCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 212 TLGG--VDNILLAKKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 212 ~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
.|. ..++++|+.+|+++. |+ +..+++.++.++..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRR 330 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHC
Confidence 551 122999999999999 74 89999999988775
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.59 E-value=1.6e-14 Score=124.28 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLE----------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (301)
.+..+|..+...|++++|+..|++++. .+|.+..++.++|.++...|++++|+.+++++++.+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 455667777777777777777777766 3344444444444444444555555555555544444
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 164 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.++...++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 4444444445554444555555555555544444444444444444444444
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.57 E-value=1.2e-13 Score=114.36 Aligned_cols=106 Identities=17% Similarity=0.071 Sum_probs=96.3
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022205 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (301)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~ 174 (301)
|.++..+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhCCCCH
Q 022205 175 IYVSLQMYKQAAFCYEELILSQPTVP 200 (301)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (301)
++...|++++|+..|++++.++|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999888764
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.56 E-value=9.3e-14 Score=119.53 Aligned_cols=126 Identities=15% Similarity=0.063 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------hCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK----------------QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 126 (301)
....+..+|..++..|++++|+..|++++. ..|.+..++..+|.++..+|++++|+.++++++.
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 455688899999999999999999999998 6677888999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 188 (301)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++++++...
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887653
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.55 E-value=6.9e-14 Score=104.82 Aligned_cols=131 Identities=16% Similarity=0.011 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHH
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDA 168 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~ 168 (301)
+..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3444444444444444444444444432211 1255556666666666666666666666554332 445
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccC
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p 234 (301)
+..+|.++...|++++|+.++++++...+. ...++..+|.++...|+ +++|..++++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHH
Confidence 666777777777777777777777655321 13456677777777777 7777777777776644
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=8.3e-13 Score=109.20 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205 83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
|+..+++.+...+.+..++..+|.++...|++++|+.++.+.+..+| .+..++...+.++..+|+.+.|.+.+++..+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78889888877656667778999999999999999999999999987 8899999999999999999999999999999
Q ss_pred hcCC----CHHHHHHH--HHHHHHcc--cHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 022205 161 TFMA----DHDAWREL--AEIYVSLQ--MYKQAAFCYEELILSQPT--VPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (301)
Q Consensus 161 ~~p~----~~~~~~~l--g~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al 230 (301)
.+|+ +-.....+ |.+.+..| ++.+|..+|+++....|+ .+..+++ ++..+|+ +++|...++.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~---~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN---IAEAQGIVELLL 238 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC---HHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC---HHHHHHHHHHHH
Confidence 9983 23334444 44466666 899999999999888886 2334333 8999999 999999999888
Q ss_pred cc----------cCCCchhHhhhHHHHHHHHHh
Q 022205 231 DL----------TGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 231 ~~----------~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+. +|+ +..++.++..+...+|+
T Consensus 239 ~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 239 SDYYSVEQKENAVLY-KPTFLANQITLALMQGL 270 (310)
T ss_dssp SHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC
T ss_pred HhcccccccccCCCC-CHHHHHHHHHHHHHhCh
Confidence 76 475 89999898888888764
No 178
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=6.7e-13 Score=109.76 Aligned_cols=166 Identities=10% Similarity=-0.061 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----DPVLHKR 137 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 137 (301)
...+..+|.++...|++++|+.++.+.+...| ++..+....+.++..+|+.+.|.+.++++...+|+ +-.+...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 34456889999999999999999999998887 88999999999999999999999999999999983 2223344
Q ss_pred H--HHHHHHcC--ChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh----------CCCCHH
Q 022205 138 R--VAIAKAQG--NFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS----------QPTVPL 201 (301)
Q Consensus 138 l--~~~~~~~g--~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~ 201 (301)
+ +.+....| ++.+|..+|+++....|+ ++..+++ ++..+|++++|...++.+++. +|+++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 4 44466666 999999999999988886 3334444 899999999999999988776 588999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCch
Q 022205 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (301)
Q Consensus 202 ~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 238 (301)
++.+++.+...+|+ +|.+++.++.+.+|+ ++
T Consensus 257 ~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~-hp 287 (310)
T 3mv2_B 257 FLANQITLALMQGL-----DTEDLTNQLVKLDHE-HA 287 (310)
T ss_dssp HHHHHHHHHHHTTC-----TTHHHHHHHHHTTCC-CH
T ss_pred HHHHHHHHHHHhCh-----HHHHHHHHHHHhCCC-Ch
Confidence 99999999999986 678999999999996 54
No 179
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=3.4e-13 Score=112.28 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=124.6
Q ss_pred ccCChHHHHHHHHHHhcCCCCcCcCCchh---HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCc------hhhHHHHH
Q 022205 35 KVRRPDKVLRHGLSILNDPKKRSALGPDV---WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEG 105 (301)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a 105 (301)
..++.+.+.......+.. ....|+. ...+..+|..+...|++++|+.++++++...+.. ..++..+|
T Consensus 87 ~~~~y~~a~~~~~~~l~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKK----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HTTCHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhcc----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345566666666666543 1223332 2344458888888899999999999999965432 23688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHH
Q 022205 106 ILLEAKGLWAEAEKAYSSLLE-------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWREL 172 (301)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~l 172 (301)
.++...|++++|+.+|++++. ..+....++.++|.+|...|++++|+.+++++++..+.. +.+++.+
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999995 222334588999999999999999999999999987544 7899999
Q ss_pred HHHHHHcc-cHHHHHHHHHHHHhh
Q 022205 173 AEIYVSLQ-MYKQAAFCYEELILS 195 (301)
Q Consensus 173 g~~~~~~~-~~~~A~~~~~~al~~ 195 (301)
|.++...| .+++|+.+|++++.+
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999 579999999999865
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.53 E-value=1.5e-13 Score=102.99 Aligned_cols=137 Identities=13% Similarity=-0.080 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 131 (301)
....++..+|..+...|++++|+.++.+++...+... .++..+|.++...|++++|+..+++++...+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 4566888999999999999999999999998765332 478889999999999999999999999865432
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
..++..+|.++...|++++|+..+++++...+.. +.++..+|.++...|++++|+.++++++.+...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5588899999999999999999999999874322 567889999999999999999999999987543
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.52 E-value=2.5e-14 Score=102.24 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=86.9
Q ss_pred CCChHHHHHHHHHHHHh---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 022205 77 CQCLDVAKDCIKVLQKQ---FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (301)
Q Consensus 77 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (301)
.|++++|+.+|++++.. +|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 58899999999999999 588899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHH
Q 022205 154 WLNKYLETFMADHDAWRE 171 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~ 171 (301)
.|++++..+|+++.....
T Consensus 83 ~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHH
Confidence 999999999999876543
No 182
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=4.9e-13 Score=104.49 Aligned_cols=135 Identities=17% Similarity=0.095 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHh------CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCC-
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLD- 131 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~- 131 (301)
....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+..+++++.. .+++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 56788999999999999999999999999984 3455678899999999999999999999999986 4433
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--AD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
..++..+|.++...|++++|+..+++++...+ .+ ..++..+|.++...|++++|+.++++++.+.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999997643 22 2356899999999999999999999999764
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.50 E-value=2.8e-13 Score=96.33 Aligned_cols=102 Identities=13% Similarity=0.074 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ +++|+..|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD---RAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888888888888888888888888 8888888888
Q ss_pred HhcccCC-CchhHhhhHHHHHHHHHh
Q 022205 229 TIDLTGG-KNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 229 al~~~p~-~~~~~~~~l~~~~~~l~~ 253 (301)
++.++|. .+..+...+......+++
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHhcc
Confidence 8888775 344555555555555544
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.47 E-value=1.9e-14 Score=124.16 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
+.+|..+|.+++..|++++|++.|.++ +++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 358889999999999999999999663 45668888888999999999999999988885444 677888999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~ 223 (301)
+.|++.++..+++. |+ ..+|..+|..++..|+|++|+.+|.++ ..|..+|.++..+|+ +++|+
T Consensus 106 Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~---yq~AV 168 (449)
T 1b89_A 106 KTNRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAV 168 (449)
T ss_dssp ---CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC---HHHHH
T ss_pred HhCCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc---HHHHH
Confidence 99999998888853 53 469999999999999999999999977 357889999999999 99999
Q ss_pred HHHHHHhcccCCCchhHhhhHHHHHHHHHhhhccCCcccccchHHHHHHHHHHHHHHHhhCC-h-hhhHHHHHH
Q 022205 224 KYYASTIDLTGGKNTKALFGICLCSSAIAQLTKGRNKEDKESPELQSLAAAALEKDYKQRAP-A-KLLLLTSAL 295 (301)
Q Consensus 224 ~~~~~al~~~p~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~~~~~~~~ 295 (301)
+.|+++ + ++..|-.++.++..++++..+..-... .. ..+.-...+...|++.+. + -+..++..|
T Consensus 169 ea~~KA-----~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 169 DGARKA-----N-STRTWKEVCFACVDGKEFRLAQMCGLH-IV-VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHH-----T-CHHHHHHHHHHHHHTTCHHHHHHTTTT-TT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHc-----C-CchhHHHHHHHHHHcCcHHHHHHHHHH-HH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999998 2 567888888888887765554222221 11 111112246677777765 2 234444443
No 185
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.47 E-value=5.1e-12 Score=121.27 Aligned_cols=172 Identities=11% Similarity=0.005 Sum_probs=139.1
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL----------- 130 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------- 130 (301)
+.+.+|.++|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+.+|..+.+..++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 45778889999999999999999999765 78888899999999999999999999887654432
Q ss_pred ----------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 131 ----------------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 131 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+...+..+|..+...|++++|+.+|.++ ..|..+|.++...|++++|+++++++..
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 2335667888888889999999988885 4788899999999999999999988843
Q ss_pred hCC-------------------------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHH
Q 022205 195 SQP-------------------------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSS 249 (301)
Q Consensus 195 ~~p-------------------------~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~ 249 (301)
..+ .++..+..++..|...|. +++|+.+++.++.++|. +...+..++.++.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~---feEAI~LlE~aL~Lera-H~gmftELaiLya 1325 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccChh-HhHHHHHHHHHHH
Confidence 322 133445567778889999 99999999999999985 8888866666665
Q ss_pred H
Q 022205 250 A 250 (301)
Q Consensus 250 ~ 250 (301)
+
T Consensus 1326 K 1326 (1630)
T 1xi4_A 1326 K 1326 (1630)
T ss_pred h
Confidence 4
No 186
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.46 E-value=4.8e-11 Score=114.73 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=120.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHH--------------------Hh--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQ--------------------KQ--FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~--------------------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
+|..+...|.+++|..+|+++. +. ..+.+.+|..+|..+...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 3666666666666665554331 11 1366788999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------CHHHHHHHHHHHHHcc
Q 022205 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---------------------------DHDAWRELAEIYVSLQ 180 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---------------------------~~~~~~~lg~~~~~~~ 180 (301)
+++..+..+|.++...|++++|+++|..+++..+. +...+..+|..+...|
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999999887755432 2335667888888888
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
+|++|+.+|.++ ..|..+|.++..+|+ +++|++.+++|. +.++|...+.++...
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge---~q~AIEaarKA~------n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGE---YQAAVDGARKAN------STRTWKEVCFACVDG 1263 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCC---HHHHHHHHHHhC------CHHHHHHHHHHHhhh
Confidence 888888888886 367888899999988 999999998882 445666555555433
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=9.7e-12 Score=108.80 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=139.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCch-----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----------------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNP 129 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 129 (301)
....|..+...|++++|+..+..+++..|... .++..+|.+|...|++++|++.+.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34457778889999999999999999887443 2467899999999999999999999988655
Q ss_pred CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-
Q 022205 130 LDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ- 196 (301)
Q Consensus 130 ~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 196 (301)
... .+...+|.++...|++++|+.++++++...+. ...++..+|.++...|+|++|+.++++++...
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 432 25566788888899999999999999876432 26788999999999999999999999998652
Q ss_pred -----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 197 -----PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 197 -----p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|....++..+|.+|...|+ +++|..+|++++...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRN---LAKSKASLTAARTAANS 207 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhhc
Confidence 3335689999999999999 99999999999988664
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.43 E-value=2.4e-12 Score=91.43 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++...|++++|+.+|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC--CHHHHHHHHHHHH
Q 022205 196 QPT--VPLYHLAYADVLY 211 (301)
Q Consensus 196 ~p~--~~~~~~~la~~~~ 211 (301)
.|. +......+...+.
T Consensus 83 ~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHH
Confidence 663 3333344444333
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.42 E-value=2.5e-12 Score=86.91 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (301)
+.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred Hc
Q 022205 212 TL 213 (301)
Q Consensus 212 ~~ 213 (301)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.7e-13 Score=96.36 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc------hhH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN------TKA 240 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~ 240 (301)
.+|..+|.+++..|++++|+.+|++++.++|+++.++.++|.++..+|+ +++|+..|+++++++|+ + ..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE---YTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444 44444444444444443 3 444
Q ss_pred hhhHHHHHHHHHh
Q 022205 241 LFGICLCSSAIAQ 253 (301)
Q Consensus 241 ~~~l~~~~~~l~~ 253 (301)
++.++.++..+++
T Consensus 81 ~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 81 QYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444444
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=6e-12 Score=88.29 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHL 204 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 204 (301)
++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+.+|++++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 205 AYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 205 ~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.+|.++..+|+ ++.|+..+++
T Consensus 83 ~~~~~~~~~~~---~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGS---VQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHC---CCCCSSSSSS
T ss_pred HHHHHHHHHHh---HhhhHhHHHH
Confidence 99999999998 7777665543
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.39 E-value=3.6e-12 Score=88.24 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=61.9
Q ss_pred hcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC-Cchh
Q 022205 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTK 239 (301)
Q Consensus 161 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (301)
.+|+++.+|+.+|.++...|++++|+.+|++++.++|+++.++..+|.++...|+ +++|+..|++++++.|. .+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhcCCchh
Confidence 3577777888888888888888888888888888888887888888888888888 88888888888877664 3444
Q ss_pred HhhhHHHHHHHH
Q 022205 240 ALFGICLCSSAI 251 (301)
Q Consensus 240 ~~~~l~~~~~~l 251 (301)
....+...+...
T Consensus 79 ~~~~l~~~l~~~ 90 (100)
T 3ma5_A 79 DLSELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 444444444433
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1e-10 Score=107.56 Aligned_cols=173 Identities=16% Similarity=0.028 Sum_probs=151.9
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHH-HHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAK-DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------- 127 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------- 127 (301)
.|..+.+|...+......|+.++|. .++++++...|.+...|...+.+....|+++.|...|++++..
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 5566777888788888889999997 9999999999999999999999999999999999999999974
Q ss_pred CCC-----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHh
Q 022205 128 NPL-----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQM-YKQAAFCYEELIL 194 (301)
Q Consensus 128 ~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~ 194 (301)
.|. ...+|...+....+.|..+.|..+|.++++. .+..+..|...|.+....++ ++.|..+|+.+++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 253 3457888899988999999999999999988 55567788888887777654 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..|+++..|..++......|+ .+.|...|++++...|+
T Consensus 499 ~~p~~~~~w~~y~~fe~~~~~---~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 499 YFATDGEYINKYLDFLIYVNE---ESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHTTTSSS
T ss_pred HCCCchHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCC
Confidence 999999999999999999999 99999999999998873
No 194
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=1e-12 Score=113.43 Aligned_cols=167 Identities=13% Similarity=0.104 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchh----------------------------hHHHHHHHHHHcCCH
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR----------------------------VGRLEGILLEAKGLW 114 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~----------------------------~~~~~a~~~~~~~~~ 114 (301)
+...|..++..+...|++++|+.+++.+.+..++ +. +|..+|..+...|+|
T Consensus 60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTCC----------------CT
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Confidence 4446666666777777777777777666653222 33 444444445555555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 115 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
++|..+|.++ ..|..+|.++.++|++++|+..++++ +++.+|..++.++...|+|+.|..+... +.
T Consensus 139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~ 204 (449)
T 1b89_A 139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 204 (449)
T ss_dssp TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence 5555555443 23445555555555555555555555 2455555555555555555555544443 22
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
..| .-...+..+|...|. +++|+.++++++.+++. +...+.+++.++.+.
T Consensus 205 ~~a---d~l~~lv~~Yek~G~---~eEai~lLe~aL~le~a-h~~~ftel~il~~ky 254 (449)
T 1b89_A 205 VHA---DELEELINYYQDRGY---FEELITMLEAALGLERA-HMGMFTELAILYSKF 254 (449)
T ss_dssp TCH---HHHHHHHHHHHHTTC---HHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTT
T ss_pred hCH---hhHHHHHHHHHHCCC---HHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhc
Confidence 223 223356678889999 99999999999999985 999999999888753
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.38 E-value=8.1e-12 Score=84.31 Aligned_cols=85 Identities=22% Similarity=0.154 Sum_probs=66.8
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 175 (301)
.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45567777788888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHcc
Q 022205 176 YVSLQ 180 (301)
Q Consensus 176 ~~~~~ 180 (301)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76543
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.5e-11 Score=105.23 Aligned_cols=168 Identities=10% Similarity=0.007 Sum_probs=139.1
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PL 130 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~ 130 (301)
...++.++|..+...|++++|+.++.+++...+... .+...++.++...|++++|+..++.++... +.
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 345678999999999999999999999988765332 345567888888899999999999998742 33
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC---CC--
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP---TV-- 199 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~-- 199 (301)
...++..+|.++...|++++|+..+++++... |....++..+|.+|...|++++|..++++++...+ +.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 46688999999999999999999999998763 22367899999999999999999999999997643 33
Q ss_pred --HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 200 --PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 200 --~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
...+..+|.++...|+ +.+|..+|.++++..
T Consensus 214 ~~~~~~~~~g~~~~~~~~---y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKD---YKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHh
Confidence 2456778888888899 999999999998763
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.31 E-value=1.8e-11 Score=84.69 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=52.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.+.|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 35777777777777777777777777777777777777777777777777777777777777777776654
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.31 E-value=7.2e-12 Score=86.26 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 214 (301)
+..|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+.+|++++.++|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777788888888888888888888877 88888888888888888888888888888877776543 4
Q ss_pred CCCcHHHHHHHHHHHhcccCC
Q 022205 215 GVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~p~ 235 (301)
. +.+++..|++++..+|+
T Consensus 76 ~---~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 M---VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp H---HHHHHHHHCCTTHHHHC
T ss_pred H---HHHHHHHHHHHhccCcc
Confidence 4 77777777777777775
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.28 E-value=7.4e-12 Score=86.20 Aligned_cols=90 Identities=13% Similarity=0.029 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
+..|.++...|++++|+..|++++..+|+++. ++..+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45678888888888888888888888888888 88888888888888888888888888888888777643 6
Q ss_pred cHHHHHHHHHHHHhhCCCC
Q 022205 181 MYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~ 199 (301)
.+.+++.+|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 6777888888877776654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.26 E-value=1.7e-10 Score=84.74 Aligned_cols=111 Identities=18% Similarity=0.085 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHH
Q 022205 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAF 187 (301)
Q Consensus 112 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~ 187 (301)
+++++|+.+|+++.+..+.... +|.+|...+.+++|+.+|+++.+. .++.++++||.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3567777777777776543333 777777777777777777777765 467777777777777 677777887
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCCCcHHHHHHHHHHHhccc
Q 022205 188 CYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~~~~A~~~~~~al~~~ 233 (301)
+|+++.+. .++.+++++|.+|.. .++ +++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d---~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKN---EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC---HHHHHHHHHHHHHCC
Confidence 77777765 567777777777777 666 788888888777763
No 201
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.2e-09 Score=100.65 Aligned_cols=173 Identities=12% Similarity=-0.015 Sum_probs=151.2
Q ss_pred CchhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhC-----------CC-----------chhhHHHHHHHHHHcCCHHHH
Q 022205 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----------PE-----------SKRVGRLEGILLEAKGLWAEA 117 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----------p~-----------~~~~~~~~a~~~~~~~~~~~A 117 (301)
.|....+|...+......|+++.|..+|++++... |. ...+|...+....+.|+.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 46667778888888889999999999999999752 42 345788888988899999999
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 118 EKAYSSLLED-NPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 118 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
...|.+++.. .+....+|...+.+....|+ ++.|..+|+.+++.+|+++..|...+......|+.+.|...|++++..
T Consensus 454 R~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 454 RKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999987 55557788888888877755 899999999999999999999999999999999999999999999998
Q ss_pred CCC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 196 QPT---VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 196 ~p~---~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.|+ ...+|..+...-...|+ .+.+.+.+.++.+..|+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~---~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGS---LNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCC---SHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Confidence 883 45788888888889999 99999999999999997
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.24 E-value=6.4e-10 Score=93.60 Aligned_cols=145 Identities=13% Similarity=0.011 Sum_probs=112.9
Q ss_pred HHHHHHhCCCchhhH--HHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---C-ChhHHHHHHHH
Q 022205 87 IKVLQKQFPESKRVG--RLEGILLEAKGL---WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ---G-NFPTAIEWLNK 157 (301)
Q Consensus 87 ~~~~~~~~p~~~~~~--~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~ 157 (301)
..++....|.++.++ ++.|..+...++ +.+|+.+|+++++.+|+++.++..++.++... + ........+..
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 344556667776654 566776666544 47899999999999999999888888877532 1 11111121221
Q ss_pred ------HHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 158 ------YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 158 ------~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
++..+|.++.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|+ +++|+..|.+|+.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~---~~eA~e~~~~Alr 338 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM---NREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 23567999999999999999999999999999999999974 7788999999999999 9999999999999
Q ss_pred ccCC
Q 022205 232 LTGG 235 (301)
Q Consensus 232 ~~p~ 235 (301)
++|.
T Consensus 339 L~P~ 342 (372)
T 3ly7_A 339 LRPG 342 (372)
T ss_dssp HSCS
T ss_pred cCCC
Confidence 9996
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.24 E-value=2.9e-10 Score=83.49 Aligned_cols=120 Identities=11% Similarity=-0.131 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChhHHHH
Q 022205 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGNFPTAIE 153 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 153 (301)
+++++|+.+|+++.+..+ +.+. +|.++...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 468899999999998753 3444 999999999999999999999986 688999999999999 899999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 154 WLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .++.+...++
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999986 689999999999999 89999999999999987 3556555554
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.18 E-value=1.4e-09 Score=91.50 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=110.8
Q ss_pred CchhHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCH----H---HHH-HHHH--HHHh
Q 022205 60 GPDVWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW----A---EAE-KAYS--SLLE 126 (301)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~---~A~-~~~~--~al~ 126 (301)
+++.+..|.+ |..++..+ ++.+|+.+|+++++.+|+++.++..++.++.....+ . .++ ..++ .++.
T Consensus 193 ~~~Aydl~Lr-a~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQ-AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHH-HHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 5566666655 55555544 457899999999999999999998888877532111 1 111 1122 2335
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
.+|.++.++..++..+...|++++|+..+++++.++| +..+|..+|.++...|++++|+..|.+|+.++|..+.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 6799999999999999999999999999999999997 4788899999999999999999999999999998754
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.15 E-value=2.3e-10 Score=101.51 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=103.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-----cCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHH
Q 022205 105 GILLEAKGLWAEAEKAYSSLLE-----DNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDA 168 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~-----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~ 168 (301)
+..+..+|+|++|+..+++++. ..|+++ ..+.++|.+|..+|++++|+.++++++.. .|++ ...
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 3446678999999999999987 345554 47889999999999999999999999875 3455 456
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 169 WRELAEIYVSLQMYKQAAFCYEELILS-----QPTVPL---YHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 169 ~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
+++||.+|..+|++++|+..|++|+.+ .|++|. ....++.++..++. +++|...|+++.+..
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~---~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM---FRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 889999999999999999999999964 567765 45688899999999 999999999986543
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.14 E-value=1.9e-09 Score=87.31 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=92.2
Q ss_pred cCCCCHHHHHHHHHHHHH-----cCC------hhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-----ccHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKA-----QGN------FPTAIEWLNKYLETFMA--DHDAWRELAEIYVSL-----QMYKQAAFC 188 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~-----~g~------~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~-----~~~~~A~~~ 188 (301)
.+|+++.+++..|.+... .|. ...|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456778887877776654 233 46899999999999999 677999999999995 999999999
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcccCC
Q 022205 189 YEELILSQPTV-PLYHLAYADVLYT-LGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 189 ~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
|+++++++|+. ..+++.+|..+.. .|+ ++.|..++++++..+|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd---~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNN---RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCCCC
Confidence 99999999975 9999999999988 499 99999999999999885
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.12 E-value=6.2e-10 Score=98.69 Aligned_cols=127 Identities=10% Similarity=-0.007 Sum_probs=106.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhC-----CC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC---HH
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQF-----PE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLD---PV 133 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~---~~ 133 (301)
.+..+...|++++|+..+++++... |+ ...++..+|.+|..+|+|++|+.++++++. ..|++ ..
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3455678899999999999999853 33 446778899999999999999999999997 34554 44
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADHD---AWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
.+.++|.+|..+|++++|+..+++++++ .|++|. ....++.++..++.+++|...|+++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999975 466654 55789999999999999999999987543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.09 E-value=1.4e-09 Score=73.72 Aligned_cols=71 Identities=11% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 128 NPLDPVLHKRRVAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
+|+++.++..+|.++...++ .++|...+++++..+|+++.+++.+|..++..|+|++|+.+|++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555555555555544433 455555555555555555555555555555555555555555555555554
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.00 E-value=3.1e-09 Score=72.02 Aligned_cols=71 Identities=10% Similarity=-0.036 Sum_probs=67.4
Q ss_pred cCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 162 FMADHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 162 ~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
+|+++..+..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+ |++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~---y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR---FQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC
Confidence 68999999999999987665 7999999999999999999999999999999999 99999999999999995
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.95 E-value=1.2e-08 Score=74.69 Aligned_cols=97 Identities=18% Similarity=0.000 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 022205 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILLAKKY 225 (301)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~~~~A~~~ 225 (301)
+...|.+.+..+|.+..+.+++|.++...+ ++++++..++.+++.+ | ++.++++++|..++++|+ |++|+++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---HHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---HHHHHHH
Confidence 344444444444444555555555555444 3445555555555544 3 234455555555555555 5555555
Q ss_pred HHHHhcccCCCchhHhhhHHHHHHHH
Q 022205 226 YASTIDLTGGKNTKALFGICLCSSAI 251 (301)
Q Consensus 226 ~~~al~~~p~~~~~~~~~l~~~~~~l 251 (301)
++++++.+|+ +..+......+...+
T Consensus 94 ~~~lL~ieP~-n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 94 VRGLLQTEPQ-NNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 5555555553 444444444444333
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.92 E-value=2e-08 Score=73.63 Aligned_cols=96 Identities=15% Similarity=-0.005 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcccHHHHHH
Q 022205 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 113 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
....+...|.+.+..+|.+..+.+++|.++.+.+ +.++++..|+.+++.+ | ++.+++++||..+++.|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567888899999999999999999999999988 6779999999999998 7 568899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHH
Q 022205 188 CYEELILSQPTVPLYHLAYAD 208 (301)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~ 208 (301)
+++++++++|++..+....-.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999887655543
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.85 E-value=5.2e-08 Score=67.55 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCc
Q 022205 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN 237 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (301)
++.-++.+|..++..|+|..|+..|+.|+... +..+.++..+|.+++.+|+ ++.|+.+++++++++|+ +
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~---~~~A~~~~~~al~l~P~-~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD---LDKALLLTKKLLELDPE-H 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT-C
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCC-C
Confidence 34556667777777777777777777777542 2345667777777777777 77777777777777775 6
Q ss_pred hhHhhhHHH
Q 022205 238 TKALFGICL 246 (301)
Q Consensus 238 ~~~~~~l~~ 246 (301)
..+..++..
T Consensus 80 ~~~~~n~~~ 88 (104)
T 2v5f_A 80 QRANGNLKY 88 (104)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhHHH
Confidence 666666653
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.82 E-value=5.9e-08 Score=67.23 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 206 (301)
-.+.+|..++..|+|..|+..|+.+++.. +..+.++..+|.++++.|+++.|+.++++++.++|+++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555555555555555555555432 12345555566666666666666666666666666665555544
Q ss_pred H
Q 022205 207 A 207 (301)
Q Consensus 207 a 207 (301)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=2.1e-06 Score=76.39 Aligned_cols=160 Identities=9% Similarity=-0.029 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----------cCCC
Q 022205 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----------DNPL 130 (301)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------~~p~ 130 (301)
|..+.+|...+......|+.+.|..++++++.. |.+...+...+... ..+ +....+..... ..+.
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccc
Confidence 445667777787888899999999999999999 98766655444331 000 00000000000 0000
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQPTVPLYHLAYADV 209 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (301)
...+|...+....+.+..+.|..+|.++ ...+.....|...|.+....+ +.+.|..+|+.+++..|+++..+..++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1123444444444444455555555555 221123334444444433333 35555555555555445544444444444
Q ss_pred HHHcCCCCcHHHHHHHHHHH
Q 022205 210 LYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~a 229 (301)
....|+ .+.|...|+++
T Consensus 364 e~~~~~---~~~aR~l~er~ 380 (493)
T 2uy1_A 364 LLRIGD---EENARALFKRL 380 (493)
T ss_dssp HHHHTC---HHHHHHHHHHS
T ss_pred HHHcCC---HHHHHHHHHHH
Confidence 444454 55555444444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.77 E-value=9.6e-08 Score=83.37 Aligned_cols=94 Identities=11% Similarity=0.095 Sum_probs=74.1
Q ss_pred HcCCHHHHHHHHHHHHh-----cCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCH---HHHHHHH
Q 022205 110 AKGLWAEAEKAYSSLLE-----DNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADH---DAWRELA 173 (301)
Q Consensus 110 ~~~~~~~A~~~~~~al~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg 173 (301)
..|+|++|+..+++++. ..|+++. .+.++|.+|..+|+|++|+.++++++.. .|++| ..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35789999999999887 3455544 6788899999999999999999998875 34444 4678899
Q ss_pred HHHHHcccHHHHHHHHHHHHhh-----CCCCHHHH
Q 022205 174 EIYVSLQMYKQAAFCYEELILS-----QPTVPLYH 203 (301)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 203 (301)
.+|..+|++++|+.+|++|+++ .|++|.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999998864 46666543
No 216
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=1.7e-06 Score=77.00 Aligned_cols=160 Identities=11% Similarity=-0.087 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 022205 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
.....+|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...+... +.++. ++.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~----e~~~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM----DEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT----TCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc----chhHH---HHHHHH
Confidence 44678999999999999999999999999999999999999999999 99988777555441 11111 222221
Q ss_pred h-------------cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHH
Q 022205 161 T-------------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYY 226 (301)
Q Consensus 161 ~-------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~~~~A~~~~ 226 (301)
. .+.....|...+....+.+..+.|...|+++ ...+....+|...|.+.+..+ + .+.|...|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d---~~~ar~if 343 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS---RATPYNIF 343 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC---hHHHHHHH
Confidence 1 1122467888888888889999999999999 443445677777777776665 6 99999999
Q ss_pred HHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 227 ASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 227 ~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+.+++..|+ ....|...+.-...+++
T Consensus 344 e~al~~~~~-~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 344 SSGLLKHPD-STLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCC
Confidence 999998885 55544444433334443
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.69 E-value=1.6e-05 Score=70.80 Aligned_cols=164 Identities=9% Similarity=-0.101 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC-CCCHHH
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDN-PLDPVL 134 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~-p~~~~~ 134 (301)
++..+...|.+.|++++|+.+|+.+.... +-+...+..+-.++... +..+.|...|+...... +-+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45556677889999999999999998864 23444444444444433 34788999999988754 236778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 022205 135 HKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYT 212 (301)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 212 (301)
|..+...+.+.|++++|..+|++..+.. +-+..+|..+-..|.+.|++++|...|+...... .-+...+..+-.++.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999988753 2358889999999999999999999999988654 2356778888999999
Q ss_pred cCCCCcHHHHHHHHHHHhcc
Q 022205 213 LGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 213 ~~~~~~~~~A~~~~~~al~~ 232 (301)
.|+ .++|...|++.-+.
T Consensus 188 ~g~---~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKN---ADKVYKTLQRLRDL 204 (501)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHh
Confidence 999 99999999987654
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=1.1e-07 Score=76.92 Aligned_cols=107 Identities=11% Similarity=-0.065 Sum_probs=91.2
Q ss_pred hCCCchhhHHHHHHHHHH---c--C------CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CChhHHHHH
Q 022205 93 QFPESKRVGRLEGILLEA---K--G------LWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQ-----GNFPTAIEW 154 (301)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~ 154 (301)
..|+++.+++-.|.+... . | ....|...++++++.+|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 446777777766665533 1 3 357899999999999999 566999999999995 999999999
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHH-cccHHHHHHHHHHHHhhCCCC
Q 022205 155 LNKYLETFMAD-HDAWRELAEIYVS-LQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 155 ~~~~l~~~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~ 199 (301)
|+++++++|+. +..++.+|..+.. .|+++.|..++++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999988763
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.67 E-value=5.7e-08 Score=84.86 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCH---HHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLED-----NPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADH---DAWRE 171 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~ 171 (301)
+..+|++++|+..+++++.. .|+++ ..+.++|.+|..+|+|++|+.++++++.. .|++| ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44567888888888888763 34443 36777788888888888888888887764 24443 45777
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhh-----CCCCHHH
Q 022205 172 LAEIYVSLQMYKQAAFCYEELILS-----QPTVPLY 202 (301)
Q Consensus 172 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 202 (301)
||.+|..+|++++|+.+|++|+.+ .|++|.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 888888888888888888887754 4666543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.61 E-value=9.7e-08 Score=83.32 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=75.4
Q ss_pred HcCChhHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCH---HHHHHHH
Q 022205 144 AQGNFPTAIEWLNKYLET-----FMADH---DAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVP---LYHLAYA 207 (301)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la 207 (301)
..|++++|+..++++++. .|+++ .++.+||.+|..+|+|++|+.++++++.+ .|++| ..+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468899999999999985 45554 56889999999999999999999999965 35554 4689999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhccc
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~~ 233 (301)
.+|..+|+ +++|+.+|++|+++.
T Consensus 390 ~~~~~qg~---~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLEN---KAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHhccC---HHHHHHHHHHHHHHH
Confidence 99999999 999999999999873
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.57 E-value=3.5e-07 Score=79.88 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=77.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-----CCCCH---HH
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLET-----FMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILS-----QPTVP---LY 202 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~ 202 (301)
..-+..+|++++|+..++++++. .|++ ..++.++|.+|..+|+|++|+.++++++.+ .|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34456789999999999999975 3455 457889999999999999999999999965 35554 46
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
+.++|.+|..+|+ +++|+.+|++|+++
T Consensus 374 l~nLa~~~~~~g~---~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGM---FPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 8999999999999 99999999999976
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.40 E-value=4.5e-06 Score=58.88 Aligned_cols=88 Identities=16% Similarity=0.030 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT---AIEWLNKYLETF-M-ADHDAWRELAEIYVSLQMYKQAAFCYE 190 (301)
Q Consensus 116 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 190 (301)
.+...|.+.+..++.+..+.+++|.++.+..+... ++..++..+..+ | ..-+..+.||..+++.|+|+.|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444455555555555555555544433 555555555544 3 233455555555555555555555555
Q ss_pred HHHhhCCCCHHHH
Q 022205 191 ELILSQPTVPLYH 203 (301)
Q Consensus 191 ~al~~~p~~~~~~ 203 (301)
.+|+..|++..+.
T Consensus 99 ~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 99 GLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHCTTCHHHH
T ss_pred HHHHhCCCCHHHH
Confidence 5555555554443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.37 E-value=1.4e-05 Score=57.62 Aligned_cols=120 Identities=12% Similarity=0.097 Sum_probs=88.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 127 DNPLDPVLHKRRVAIAKAQGNF------PTAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~l~~~p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
..|.+++.|..........|+. ++-+..|++++..-|-. ...|...|.. ...++.++|..+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4677777777777777777777 77777888877766543 3456666644 5668999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHH
Q 022205 193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIA 252 (301)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~ 252 (301)
+.+....+.+|...|..-.+.|+ ...|.+.+.+++.+.|. ..-+...++.-.+.|
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k--~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAV--PLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCB--CHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCC--cHHHHHHHHHhhhcC
Confidence 88888888899999999999999 99999999999999884 334444444443433
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.26 E-value=1.7e-05 Score=55.99 Aligned_cols=99 Identities=17% Similarity=-0.008 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCCCcHHHH
Q 022205 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ---AAFCYEELILSQ-P-TVPLYHLAYADVLYTLGGVDNILLA 222 (301)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~~~~A 222 (301)
...+...|.+.+..++.+..+.+++|.++....+... ++..++..+..+ | ..-..++.+|..++++|+ |.+|
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~---Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---YEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC---HHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh---HHHH
Confidence 4556777777888788889999999999999877665 999999998876 5 456789999999999999 9999
Q ss_pred HHHHHHHhcccCCCchhHhhhHHHHHHH
Q 022205 223 KKYYASTIDLTGGKNTKALFGICLCSSA 250 (301)
Q Consensus 223 ~~~~~~al~~~p~~~~~~~~~l~~~~~~ 250 (301)
+.+++.+++..|+ |..+.--...+..+
T Consensus 94 ~~~~~~lL~~eP~-n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ-NNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999999996 76665544443333
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.13 E-value=0.00026 Score=62.99 Aligned_cols=152 Identities=9% Similarity=-0.052 Sum_probs=117.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHhc-CCCHHHH
Q 022205 101 GRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGN---------FPTAIEWLNKYLETF-MADHDAW 169 (301)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~l~~~-p~~~~~~ 169 (301)
+...-..+.+.|++++|+..|++..... +-+...|..+..++...+. .++|..+|++..... +-+..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444466778999999999999998754 2356677777777765544 678999999887653 2257889
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS 248 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~ 248 (301)
..+-..|.+.|++++|...|++..... +-+...|..+-..|.+.|+ +++|.+.|.+..+..-.++...+..+..++
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~---~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD---ADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999988653 2357778888899999999 999999999988753334677777777777
Q ss_pred HHHHhhh
Q 022205 249 SAIAQLT 255 (301)
Q Consensus 249 ~~l~~~~ 255 (301)
.+.++..
T Consensus 186 ~~~g~~d 192 (501)
T 4g26_A 186 MDTKNAD 192 (501)
T ss_dssp HHTTCHH
T ss_pred hhCCCHH
Confidence 7766533
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.08 E-value=6.7e-05 Score=54.18 Aligned_cols=120 Identities=14% Similarity=-0.002 Sum_probs=77.5
Q ss_pred CCCchhhHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 022205 94 FPESKRVGRLEGILLEAKGLW------AEAEKAYSSLLEDNPLD--------PVLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (301)
Q Consensus 94 ~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (301)
.|.+++.|..........|+. ++-++.|++++..-|-. ...|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 366666666666666666666 66666666666654432 2244445543 44577888888888887
Q ss_pred HhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 160 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
..+...+.+|...|..-.++|+...|.+.+.+++...|..... ...|..-...|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~ 142 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQK 142 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence 7766667778888888888888888888888888877765543 233333344443
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.96 E-value=0.00013 Score=53.73 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCch---------hhHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q 022205 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---------RVGRLEGILLEAKGLWAEAEKAYSSLLEDN---PL 130 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~ 130 (301)
.|.++.+ ...++..|.|+.|+-....++....+++ .+...+|..++..++|..|...|++++... +.
T Consensus 20 ~~~l~dq-ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 20 HMNVIDH-VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp -CCHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 6678899999999999888776543322 367889999999999999999999997632 22
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 022205 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (301)
+......++. ..... .... .+.+.+..+.++.||...+++++|+..++.+-. .-..+.+...+|..|
T Consensus 99 ~~s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp -----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CCCccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 2221111110 00000 0011 134567778888888888888888888765321 234566667777654
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.83 E-value=0.00025 Score=52.28 Aligned_cols=116 Identities=13% Similarity=-0.061 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CCH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFM---ADH 166 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~ 166 (301)
.+++--...+...|.|+.|+-....++....+++ .++..+|.+++..|+|..|...|++++.... ..+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455556666777777777666554322211 2556677777777777777777777665432 222
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
.....++. ...... ... .+.+.++.+.++.||..+++ +++|+..++..
T Consensus 101 s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~---~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ---DKDAIAILDGI 148 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTC---HHHHHHHHHTS
T ss_pred Cccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC---HHHHHHHHhcC
Confidence 11111110 000000 011 13455788999999999999 99999998753
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.67 E-value=0.001 Score=47.00 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 150 TAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
+++..++..++.+|. .-+.++.||..+++.|+|+.|..+.+.+++..|+|..
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 344444444444432 2334444444444444444444444444444444433
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.63 E-value=0.0028 Score=45.37 Aligned_cols=74 Identities=11% Similarity=0.003 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205 165 DHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (301)
++.+.+++|.++....+ ..+++..++..+...|. .-+.++.+|..++++|+ |.+|+.+.+..++..|+ |..+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~---Y~~Ar~y~d~lL~~eP~-n~QA 113 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQV 113 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTCCC-CHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHH
Confidence 34445555555544432 23455555555554442 23344555555555555 55555555555555553 4444
Q ss_pred hh
Q 022205 241 LF 242 (301)
Q Consensus 241 ~~ 242 (301)
.-
T Consensus 114 ~~ 115 (144)
T 1y8m_A 114 GA 115 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.61 E-value=0.0043 Score=44.46 Aligned_cols=79 Identities=8% Similarity=-0.098 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Q 022205 129 PLDPVLHKRRVAIAKAQGNF---PTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 204 (301)
+-...+.++++.++.+..+. .+++.+++..+...|. .-+..+.||..+++.|+|+.|..+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 55678899999999988764 5799999999998885 4678899999999999999999999999999999987655
Q ss_pred HHH
Q 022205 205 AYA 207 (301)
Q Consensus 205 ~la 207 (301)
...
T Consensus 116 Lk~ 118 (144)
T 1y8m_A 116 LKS 118 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.57 E-value=0.0012 Score=46.67 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhH
Q 022205 165 DHDAWRELAEIYVSLQM---YKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (301)
Q Consensus 165 ~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (301)
++.+.+++|.++....+ ...++..++..+..+|.. -+.++.+|..++++|+ |.+|+++...+++..|+ |..+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgd---Y~~Ar~y~d~lL~~eP~-N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGE---YSMAKRYVDTLFEHERN-NKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTCTT-CHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhhCCC-CHHH
Confidence 58899999999988764 458999999999988854 6789999999999999 99999999999999996 7766
Q ss_pred hhhHHHHHHHH
Q 022205 241 LFGICLCSSAI 251 (301)
Q Consensus 241 ~~~l~~~~~~l 251 (301)
.--...+..++
T Consensus 115 ~~Lk~~Ie~ki 125 (134)
T 3o48_A 115 GALKSMVEDKI 125 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.30 E-value=0.057 Score=46.13 Aligned_cols=167 Identities=12% Similarity=-0.031 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhh-----HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHH----
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV-----GRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPV---- 133 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~---- 133 (301)
-.....+|..+...|+.++-..++.......+.-+.+ ...+-..+.. -+..+.-++.+..+++...+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999998888887665544332222 1122222222 35556666667766653322211
Q ss_pred --HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--C----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC---CCCHH-
Q 022205 134 --LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--D----HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL- 201 (301)
Q Consensus 134 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~- 201 (301)
.-..+|..|...|+|.+|.+.+.+.++.... + .+.+..-..+|...+++.++...+.++.... +.+|.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2347899999999999999999988875432 2 3556677888999999999999999987543 23443
Q ss_pred ---HHHHHHHHHH-HcCCCCcHHHHHHHHHHHhccc
Q 022205 202 ---YHLAYADVLY-TLGGVDNILLAKKYYASTIDLT 233 (301)
Q Consensus 202 ---~~~~la~~~~-~~~~~~~~~~A~~~~~~al~~~ 233 (301)
....-|..+. ..++ |..|..+|-++++-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rd---yk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERD---FKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccC---HHHHHHHHHHHHhcc
Confidence 3445577788 7899 999999999998543
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0036 Score=57.99 Aligned_cols=112 Identities=13% Similarity=-0.053 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChhHHHHHHHHHHHh--------cCCC----------HHHHHHH
Q 022205 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAK--AQ-GNFPTAIEWLNKYLET--------FMAD----------HDAWREL 172 (301)
Q Consensus 114 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~~l~~--------~p~~----------~~~~~~l 172 (301)
++.|+..+++....+|.....+. .+.+.. .. .+--+|++.+.+.++. .+.+ ...+..-
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~-~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYK-TAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 46677777777777765443222 222111 11 2233566666666532 1222 1233444
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~a 229 (301)
+..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+ |+.|+-.+.-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence 6666677778888888888888888888888888888888888 77777666554
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0031 Score=58.42 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=83.3
Q ss_pred hCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHHH--Hc-CCHHHHHHHHHHHHh--------cCCCCH----------H
Q 022205 76 DCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILLE--AK-GLWAEAEKAYSSLLE--------DNPLDP----------V 133 (301)
Q Consensus 76 ~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~--~~-~~~~~A~~~~~~al~--------~~p~~~----------~ 133 (301)
..++ ++.|+.+++++...+|.....+ ..+.+.. .. .+--+|+....+.++ ..+.+. .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 5889999999999988654322 2222222 11 233457777776664 123332 2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
.+..-+..+...|+++-|+.+.++++...|.+..+|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33444566677999999999999999999999999999999999999999999776654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.05 Score=40.69 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=66.3
Q ss_pred HhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 022205 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (301)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (301)
++.|+++.|..+.+.+ ++...|..+|......|+++-|..+|+++-. +..+..+|...|+.+.-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 6678888888887654 5677888888888888888888888887632 23455566677776655544
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 022205 155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (301)
Q Consensus 155 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 191 (301)
.+.+.... + +.....+++..|+++++++.|.+
T Consensus 83 a~iA~~~g-~----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTRE-D----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTT-C----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCc-c----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443332 1 22334556677888888777754
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.056 Score=47.72 Aligned_cols=81 Identities=17% Similarity=0.024 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHH
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLC 247 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~ 247 (301)
.+..||++......+..|..+|.+|..+.|+++..+..+|.+....|+ .-+|+-+|.+++.... +...+.-++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~---~l~a~y~y~rsl~~~~-Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD---HLTTIFYYCRSIAVKF-PFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSSB-CCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccc---cHHHHHHHHHHHhcCC-CChhHHHHHHHH
Confidence 455677777777777888888888888888888888888888888777 7778888888877655 367777777766
Q ss_pred HHHHH
Q 022205 248 SSAIA 252 (301)
Q Consensus 248 ~~~l~ 252 (301)
.....
T Consensus 230 f~~~~ 234 (497)
T 1ya0_A 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65543
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.46 E-value=0.021 Score=50.39 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 177 (301)
.+..+|++......+..|..+|.+|....|++..++..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 344566666666777777777777777777777777777777777777777777777777665556667766666554
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.16 Score=37.93 Aligned_cols=113 Identities=13% Similarity=-0.008 Sum_probs=76.5
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 022205 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (301)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~ 175 (301)
.++...+.+ ....|+++.|.+..+.. ++...|..+|......|+++-|+.+|.++- + +..+..+
T Consensus 6 ~D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~L 69 (177)
T 3mkq_B 6 QDPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFL 69 (177)
T ss_dssp SCHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHH
T ss_pred CChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHH
Confidence 344444443 46779999999887765 568899999999999999999999998753 3 2234455
Q ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 176 YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
|...|+.+.-.+.-+.+..... +.....+++.+|+ ++++++.|.+.=+.
T Consensus 70 y~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGd---v~~~i~lL~~~~r~ 118 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNS---TKERSSIFAEGGSL 118 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTC---HHHHHHHHHHTTCH
T ss_pred HHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCC---HHHHHHHHHHCCCh
Confidence 5666776655555544443322 1223455778888 88888888665443
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.14 Score=47.95 Aligned_cols=98 Identities=16% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHhCCChHHHHH-HHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 022205 74 AMDCQCLDVAKD-CIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (301)
Q Consensus 74 ~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (301)
.+..+++++|.. ++.. -|+ ..........+...|.+++|+...+ ++... .......|++++|.
T Consensus 609 ~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLAR 672 (814)
T ss_dssp HHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHH
Confidence 356778887766 4310 110 1111344455556666666654432 11111 22344566666666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 022205 153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (301)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 192 (301)
+..+. .+++..|..+|..+...++++.|..+|.++
T Consensus 673 ~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 673 DLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 65432 345666666666666666666666666654
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.27 E-value=0.12 Score=44.28 Aligned_cols=61 Identities=15% Similarity=-0.002 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
+...++..+...|++.+|+..+..++..+|-+-.+|..+-.+++..|+ ..+|+..|+++-+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 345677888889999999999999999999999999999999999999 9999999888654
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.24 E-value=0.15 Score=40.82 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=71.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHH
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 187 (301)
+++.|+.++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|.....-..+..+ -.|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHH
Confidence 45567788888888888888888888888888888888888888888888888887754322111111 01111
Q ss_pred HHHHHHh--hCC---CCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 188 CYEELIL--SQP---TVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 188 ~~~~al~--~~p---~~~---~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.=..++. ..| ..+ .....-+......|+ .++|...-.++++..|.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~---~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCcc
Confidence 1111111 111 112 223333455556677 88888888888777664
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.14 E-value=0.15 Score=47.76 Aligned_cols=105 Identities=14% Similarity=0.001 Sum_probs=61.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHc
Q 022205 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY--------LETFMADHDAWRELAEIYVSL 179 (301)
Q Consensus 108 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------l~~~p~~~~~~~~lg~~~~~~ 179 (301)
....|++++|.+..+ ..++...|..+|..+...|+++.|+.+|.++ +.....+...+..++......
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345567777766543 3345666777777777777777777776663 112244555566666666667
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
|++..|..+|.+. .++ .....+|...++ +++|+..-++
T Consensus 737 ~~~~~A~~~~~~~-----g~~---~~a~~~~~~~~~---~~~A~~lA~~ 774 (814)
T 3mkq_A 737 GKFNLAFNAYWIA-----GDI---QGAKDLLIKSQR---FSEAAFLGST 774 (814)
T ss_dssp TCHHHHHHHHHHH-----TCH---HHHHHHHHHTTC---HHHHHHHHHH
T ss_pred CchHHHHHHHHHc-----CCH---HHHHHHHHHcCC---hHHHHHHHHH
Confidence 7777766665432 111 123355666666 7777665543
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.11 E-value=0.16 Score=43.41 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=73.5
Q ss_pred HHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205 73 AAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA-EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 151 (301)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 151 (301)
.....|+.+.|...+..++......+-.-.. ...|-.+ ...++.. ...+...++..+...|++.++
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-------~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQFVEPFATALVED------KVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-------chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHH
Confidence 3445677777888888887766432211000 0111111 1111111 112445677888899999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+..+..++..+|.+-.+|..+-.++...|+..+|+..|+++-.
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987654
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.7 Score=40.22 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHH-H--HH-HcCCHHHHHHHHHHHHhcC------CC-
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-L--LE-AKGLWAEAEKAYSSLLEDN------PL- 130 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~--~~-~~~~~~~A~~~~~~al~~~------p~- 130 (301)
....+...+...+...|+++.....+..+.+..+....+...+.. + +. .....+. ......+..- --
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchH
Confidence 345667777788888899988877776666554433222211111 1 11 1122111 1111222211 00
Q ss_pred ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-C-CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHh---hCC
Q 022205 131 ----DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-M-AD----HDAWRELAEIYVSLQMYKQAAFCYEELIL---SQP 197 (301)
Q Consensus 131 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p-~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p 197 (301)
.......|+.++...|++.+|...+.....-. . .+ .+.+.....+|...+++..|...+.++.. ..+
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 23456789999999999999999999876432 1 11 46778889999999999999999998742 234
Q ss_pred CCH----HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 198 TVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 198 ~~~----~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.++ ..+...|.++...++ |.+|..+|..++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~---y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKRE---YLEVAQYLQEIYQT 247 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhc
Confidence 444 356677888999999 99999999999875
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.12 Score=44.96 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCHH----H
Q 022205 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQ--PTVPL----Y 202 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~----~ 202 (301)
..++..+|..|...|+++.|.+.|.++....... .+.+..+..++...++|..+..++.++-... ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3467778888888888888888888877765433 5677777788888888888888888876442 22222 3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
....|.++...++ |..|..+|..++.-
T Consensus 211 k~~~gl~~l~~r~---f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRN---FKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh---HHHHHHHHHHHhcc
Confidence 3344666667777 88888888887654
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.71 E-value=0.41 Score=35.37 Aligned_cols=160 Identities=14% Similarity=0.017 Sum_probs=99.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHh----c-------------CCC
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE----D-------------NPL 130 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~-------------~p~ 130 (301)
.-++..++-.|.+..++-++.. -+...+.+..+.|+...++|..|+..+++.+. . +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 3456777778888887766532 34555667778888888889999888888883 1 233
Q ss_pred CHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH-----------HHH------HcccHHHHHH-----
Q 022205 131 DPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE-----------IYV------SLQMYKQAAF----- 187 (301)
Q Consensus 131 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~-----------~~~------~~~~~~~A~~----- 187 (301)
+.+ .+..+|.++...|+-++|+.++.......|-.+.+-..+-. +.. +...+....+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~ 191 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESL 191 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhc
Confidence 444 45567888888888888888888888887754433211100 000 0011111111
Q ss_pred ---HHHHHHhhCCCCHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 188 ---CYEELILSQPTVPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 188 ---~~~~al~~~p~~~~~-~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..++-...-|.-... ....+.-++.+|- .+++...|...-+.+|.
T Consensus 192 s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~---~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 192 SPSLVKKYMEHVPGIGSYFISNAARRYFNLGM---NDKSKACFELVRRKDPM 240 (242)
T ss_dssp CHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCC
Confidence 122222233444332 3345677888888 89999998888888873
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.69 E-value=0.38 Score=38.46 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=86.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 022205 72 IAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 151 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 151 (301)
...++.|+.++|+..+...++..|.+......+..++.-.|+++.|...++.+.+.+|+.......+..+ =.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3467889999999999999999999999999999999999999999999999999999865532111110 011
Q ss_pred HHHHHHHHH-----hcCCCHHHHH---HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 152 IEWLNKYLE-----TFMADHDAWR---ELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 152 ~~~~~~~l~-----~~p~~~~~~~---~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
...=.+.+. ..+..+..|. .-+......|+.++|...-..+++..|..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111111111 1123334443 33555566799999999999999888764
No 249
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.54 E-value=0.49 Score=35.00 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----C-------------CCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----F-------------PES-KRVGRLEGILLEAKGLWAEAEKAYSSLL 125 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~-------------p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al 125 (301)
.+..+..+.|+...+++..|+.+++.++.- + |.+ .-.+..+|.++...|+.++|+.++....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 344444588999999999999999999932 1 222 2345678999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHH--H--------HHcCChhHHHHHHH---------------HHHHhcCCCHHH-HHHHHHHHHHc
Q 022205 126 EDNPLDPVLHKRRVAI--A--------KAQGNFPTAIEWLN---------------KYLETFMADHDA-WRELAEIYVSL 179 (301)
Q Consensus 126 ~~~p~~~~~~~~l~~~--~--------~~~g~~~~A~~~~~---------------~~l~~~p~~~~~-~~~lg~~~~~~ 179 (301)
..+|-.+.+-..+-.- . ...|+-.--.+.+. +..+.-|.-... ....+..|+..
T Consensus 142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l 221 (242)
T 3kae_A 142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL 221 (242)
T ss_dssp HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence 9998765543221110 0 00111111111122 222222333222 23567788999
Q ss_pred ccHHHHHHHHHHHHhhCCCC
Q 022205 180 QMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~ 199 (301)
|..++...+|...-..+|..
T Consensus 222 g~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 222 GMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp TCHHHHHHHHHHHHHHSTTT
T ss_pred ccchhHHHHHHHHHhcCCCc
Confidence 99999999999998888853
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.047 Score=48.05 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=59.2
Q ss_pred HHHHhCCChHHHHHHHHHHHH--h---------CCCchhhHHHHHHHHHHcCCHHHHH----------HHHHHHHh----
Q 022205 72 IAAMDCQCLDVAKDCIKVLQK--Q---------FPESKRVGRLEGILLEAKGLWAEAE----------KAYSSLLE---- 126 (301)
Q Consensus 72 ~~~~~~~~~~~A~~~~~~~~~--~---------~p~~~~~~~~~a~~~~~~~~~~~A~----------~~~~~al~---- 126 (301)
..+++.+++++|..+...++. . ++-...+|+..+.++...|+..... ..+-.+++
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l 223 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL 223 (523)
T ss_dssp -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence 446677899998888765551 1 2234556777777777777665432 22222222
Q ss_pred -cCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Q 022205 127 -DNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (301)
Q Consensus 127 -~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 197 (301)
.|+. ....+..+-..|...+.+++|..+..++. +|.+ ...++.+|.++.-+++|.+|..++..|+...|
T Consensus 224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 2222 24477788899999999999999999885 5533 45677899999999999999999999998877
Q ss_pred CC
Q 022205 198 TV 199 (301)
Q Consensus 198 ~~ 199 (301)
.+
T Consensus 302 ~~ 303 (523)
T 4b4t_S 302 HN 303 (523)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.42 E-value=0.57 Score=46.03 Aligned_cols=141 Identities=10% Similarity=-0.009 Sum_probs=97.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------
Q 022205 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---------------------- 127 (301)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------- 127 (301)
+...++..+.++.+.. .....|.++...+++|.++...|++++|..+|+++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444555666655543 34456778888899999999999999999999887321
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC-CCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHH
Q 022205 128 -NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-ADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (301)
Q Consensus 128 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (301)
....+..|..+..++...|.++.+++..+.+++..+ ++. ..|..+-..+...|+|++|...+...-.. ..-..
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~ 972 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKS 972 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHH
Confidence 111234677888899999999999999999998764 333 26788889999999999998776543211 12234
Q ss_pred HHHHHHHHHHHcCC
Q 022205 202 YHLAYADVLYTLGG 215 (301)
Q Consensus 202 ~~~~la~~~~~~~~ 215 (301)
.+..+-......|.
T Consensus 973 cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 44445444444444
No 252
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.40 E-value=0.24 Score=47.36 Aligned_cols=98 Identities=9% Similarity=-0.123 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-CCCHHHHHHHH
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF-MADHDAWRELA 173 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg 173 (301)
..+..+-..+.+.|+.++|...|...-.. -.-+...|..+...+.+.|++++|..+|++..+.. .-|..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34566677788889999999888665432 23357788888888899999999999998887653 22577788888
Q ss_pred HHHHHccc-HHHHHHHHHHHHhhC
Q 022205 174 EIYVSLQM-YKQAAFCYEELILSQ 196 (301)
Q Consensus 174 ~~~~~~~~-~~~A~~~~~~al~~~ 196 (301)
.++.+.|+ .++|..+|++.....
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888887 477888888887654
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.34 E-value=0.47 Score=45.50 Aligned_cols=99 Identities=10% Similarity=-0.085 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHh----CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR 138 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 138 (301)
-..|..+...+.+.|+.++|..+|...... ..-+...|..+-..+.+.|++++|.+.|+...... .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345777788899999999999999776532 23466677788888999999999999999998754 2357778888
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHHhc
Q 022205 139 VAIAKAQGNF-PTAIEWLNKYLETF 162 (301)
Q Consensus 139 ~~~~~~~g~~-~~A~~~~~~~l~~~ 162 (301)
..++.+.|+. ++|..+|++..+..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8899999985 78889999988764
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.17 Score=43.88 Aligned_cols=100 Identities=12% Similarity=-0.056 Sum_probs=79.2
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCH----H
Q 022205 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP---LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADH----D 167 (301)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~----~ 167 (301)
-..++..+|..+...|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++..... .++ .
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 445788999999999999999999999887433 2356788888999999999999999999876532 222 2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
.....|.++...++|..|...|-.++...
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34456777788899999999999887654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.96 E-value=0.52 Score=40.19 Aligned_cols=138 Identities=15% Similarity=-0.035 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHhCCCchhh------HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHc
Q 022205 78 QCLDVAKDCIKVLQKQFPESKRV------GRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQ 145 (301)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~------~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~ 145 (301)
+..+.-+.++...++........ -..+|..|+..|+|.+|...+.+....- .++ .+++..-..+|...
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~ 152 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 152 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh
Confidence 44455555555555533222222 2368999999999999999998887732 122 33666778889999
Q ss_pred CChhHHHHHHHHHHHhc---CCCHH----HHHHHHHHHH-HcccHHHHHHHHHHHHhhCCC--CH---HHHHHHHHHHHH
Q 022205 146 GNFPTAIEWLNKYLETF---MADHD----AWRELAEIYV-SLQMYKQAAFCYEELILSQPT--VP---LYHLAYADVLYT 212 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~---p~~~~----~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~--~~---~~~~~la~~~~~ 212 (301)
|++.++...+.++.... +.+|. ....-|.++. ..++|..|..+|-.++.-... ++ .+...++.+...
T Consensus 153 ~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 153 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM 232 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 99999999999887653 23333 3455688888 899999999999988743321 12 233445555555
Q ss_pred cCC
Q 022205 213 LGG 215 (301)
Q Consensus 213 ~~~ 215 (301)
.++
T Consensus 233 ~~~ 235 (394)
T 3txn_A 233 LGQ 235 (394)
T ss_dssp TTC
T ss_pred cCC
Confidence 565
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.081 Score=46.57 Aligned_cols=128 Identities=11% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHcCChhHHH----------HHHHHHHH-
Q 022205 103 LEGILLEAKGLWAEAEKAYSSLLE-----------DNPLDPVLHKRRVAIAKAQGNFPTAI----------EWLNKYLE- 160 (301)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~al~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~l~- 160 (301)
+.-..+...+++++|.++....+. .|+-...+|+.++.++...|+..... ..+-.+++
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt 220 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI 220 (523)
T ss_dssp --------------------------------------------------------------CHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Confidence 334445667889998888776651 23444557888888887777765532 22222222
Q ss_pred ----hcCCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 022205 161 ----TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (301)
Q Consensus 161 ----~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~~~~A~~~~~~ 228 (301)
.++.. ...+..+-..|...+.+++|.....++. .|.. ...++.+|.++...++ |.+|.+++..
T Consensus 221 a~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~~ 295 (523)
T 4b4t_S 221 ASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYIIA 295 (523)
T ss_dssp CCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHH
Confidence 12221 4567788899999999999999999885 3422 3467788999999999 9999999999
Q ss_pred HhcccCC
Q 022205 229 TIDLTGG 235 (301)
Q Consensus 229 al~~~p~ 235 (301)
|++..|.
T Consensus 296 A~rkap~ 302 (523)
T 4b4t_S 296 AIRKAPH 302 (523)
T ss_dssp HTSSCSC
T ss_pred HHHhCCc
Confidence 9999885
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=2.4 Score=36.82 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH---hcCCCH--
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE---TFMADH-- 166 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~-- 166 (301)
.+....++.++...|++.+|...+....... ..+ ..++.....++...+++.+|...++++.. ..+.++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3455778999999999999999999876421 122 34777788899999999999999998743 233343
Q ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 167 --DAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 167 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
..+...|.++...++|.+|..+|..++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35567888899999999999999998854
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.90 E-value=7.2 Score=35.44 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=88.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~ 180 (301)
+.......+.+.|...+.......+-+.. .+..++.-....+...++...+.+.....+++.......+ ..+..|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHHHCC
Confidence 44444456888899888877654433333 2222332333344366777888776654443333333334 445679
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHHHHHHh
Q 022205 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCSSAIAQ 253 (301)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~~~l~~ 253 (301)
+++.|...|...-...+..+...+.+|.++..+|+ .++|..+|+++.. +. .+||+. +...+|.
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~---~~~a~~~~~~~a~--~~----~fYg~l-Aa~~Lg~ 362 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR---EAEAKEILHQLMQ--QR----GFYPMV-AAQRIGE 362 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT--SC----SHHHHH-HHHHTTC
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC---HHHHHHHHHHHhc--CC----ChHHHH-HHHHcCC
Confidence 99999999977655334567788999999999999 9999999999875 32 355543 4455554
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.04 E-value=1.3 Score=43.51 Aligned_cols=116 Identities=10% Similarity=-0.107 Sum_probs=78.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------------------c--
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------------------F-- 162 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------------------~-- 162 (301)
...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.- .
T Consensus 819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 334455566655543 33456677777788899999999999999998875210 0
Q ss_pred -CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 163 -MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP-TVPL----YHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 163 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~----~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
..-+..|..+..++...+.++.+++..+.|+...+ ++.. .|.++=..+..+|+ |++|...+.
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~ 962 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALM 962 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHH
Confidence 11134566677778888888888888888887654 3332 56666677788888 888866664
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.20 E-value=11 Score=34.35 Aligned_cols=160 Identities=10% Similarity=-0.034 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 141 (301)
+.+.....++...+..+...++...+.......+++.... -++...++.|++..|..++..+-...+......+.+|..
T Consensus 250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra 328 (618)
T 1qsa_A 250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADL 328 (618)
T ss_dssp HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH-HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHH
Confidence 3444555666666666645666777776655444333332 333345567999999998887655444567778889999
Q ss_pred HHHcCChhHHHHHHHHHHHhc--------------------CC---C-----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 142 AKAQGNFPTAIEWLNKYLETF--------------------MA---D-----HDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~--------------------p~---~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
+...|+.++|..+|..+.... +. . ...-...+..+...|....|...+..++
T Consensus 329 ~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~ 408 (618)
T 1qsa_A 329 LLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV 408 (618)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 999999999999888865411 00 0 0012345566777888888888887776
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
... ++.-...++.+....|. +..++....
T Consensus 409 ~~~--~~~~~~~la~~a~~~~~---~~~~v~~~~ 437 (618)
T 1qsa_A 409 KSK--SKTEQAQLARYAFNNQW---WDLSVQATI 437 (618)
T ss_dssp TTC--CHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred hcC--CHHHHHHHHHHHHHCCC---hHHHHHHHH
Confidence 532 24444566777777777 766665443
No 261
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=89.23 E-value=5.8 Score=38.16 Aligned_cols=35 Identities=11% Similarity=-0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCCHH
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTVPL 201 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 201 (301)
..|.....++...+-++.++...+.|+.. .++++.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 46677888888888999999999998864 345544
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.25 E-value=16 Score=29.95 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=64.7
Q ss_pred HHHhCCChHHHHHHHHHHHHhC----C--CchhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHH
Q 022205 73 AAMDCQCLDVAKDCIKVLQKQF----P--ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-----DNPLDPVLHKRRVAI 141 (301)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~ 141 (301)
..+..|+|=+|.+.++.+..+. . +.....+.-+..+...|++.-|.+...-.++ ..|-+......+..+
T Consensus 22 ~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455566666666665555432 1 1222334445555666776666554333332 123344455556655
Q ss_pred HHHcCChh-HHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 022205 142 AKAQGNFP-TAIEWLNKYLETF-------MADHDAWRELAEIYVSLQMYKQAAFCYE 190 (301)
Q Consensus 142 ~~~~g~~~-~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 190 (301)
+......+ .=..+.++++... -.+|..+..+|..|...|++.+|..+|-
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 55433211 2234445554432 1467888888888888888888888774
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.06 E-value=31 Score=33.19 Aligned_cols=105 Identities=12% Similarity=0.025 Sum_probs=60.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------------hhCC
Q 022205 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI---------------------LSQP 197 (301)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------------------~~~p 197 (301)
...+...|.++-+ ...+...|.++..-+.+|.++...|++++|..+|++|- ...+
T Consensus 817 ~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 817 VEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence 3344444544432 22334445555555555555555555555555555432 0112
Q ss_pred CC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccc-CC---CchhHhhhHHHHHHH
Q 022205 198 TV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT-GG---KNTKALFGICLCSSA 250 (301)
Q Consensus 198 ~~--~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~~l~~~~~~ 250 (301)
.. ..+|.....++...+- ++-++.+.+.|+..- ++ .....|..+..++..
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a---~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESA---YIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 22 3478888999999999 999999999999753 32 223455555554443
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.98 E-value=12 Score=26.74 Aligned_cols=56 Identities=14% Similarity=-0.023 Sum_probs=38.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
.....+|+-++-.+.+...+..++-+|+....+|.+|.+.|+..+|-..+.+|.+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34556677777777777766666666777777777777777777777777777654
No 265
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=78.49 E-value=7.2 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=15.0
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCC
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (301)
.+|..+...|++++|..+|-+|+...|.-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 34555555555555555555555555443
No 266
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=78.44 E-value=16 Score=26.09 Aligned_cols=139 Identities=11% Similarity=-0.044 Sum_probs=84.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHcCCh
Q 022205 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA--KAQGNF 148 (301)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--~~~g~~ 148 (301)
|.-.+..|..++..+++.+.....|-...-|+.--.+- . -+-+--.+.++.. |.++ ...|+.
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD-~-a~C~y~v~vLd~I--------------GkiFDis~C~Nl 77 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLE-S-IDCRYMFQVLDKI--------------GSYFDLDKCQNL 77 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHH-H-CCHHHHHHHHHHH--------------GGGSCGGGCSCT
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecch-h-hchhHHHHHHHHH--------------hhhcCcHhhhcH
Confidence 44456678888898888888887665554444322111 1 1111112222221 1111 123455
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 022205 149 PTAIEWLNKYLETFMADHDAWRELA-EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~ 227 (301)
..-+.++-+. +.. .. ++.+| .....+|+-++--+.+...+.-++-+|..+..+|.+|.+.|+ ..+|.+.+.
T Consensus 78 KrVi~C~~~~---n~~-se-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~---~r~a~eLl~ 149 (172)
T 1wy6_A 78 KSVVECGVIN---NTL-NE-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD---ERDATTLLI 149 (172)
T ss_dssp HHHHHHHHHT---TCC-CH-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHh---cch-HH-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc---hhhHHHHHH
Confidence 5555554432 221 12 23333 445677888888888888777777889999999999999999 999999999
Q ss_pred HHhccc
Q 022205 228 STIDLT 233 (301)
Q Consensus 228 ~al~~~ 233 (301)
+|.+.-
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 998763
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.43 E-value=46 Score=31.87 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESK--RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.-+|.+++-.++ +++...+..++..+.... .+-+.+|.++...|+-+-....+..+.+...+...-...+|..+...
T Consensus 459 LGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 459 LGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 345555555554 456666666665332211 23456677777788876666666666654433333333444445567
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHcccHHHHHH-HHHHHH
Q 022205 146 GNFPTAIEWLNKYLETFMADHDAW----RELAEIYVSLQMYKQAAF-CYEELI 193 (301)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~----~~lg~~~~~~~~~~~A~~-~~~~al 193 (301)
|+.+.+....+.... . .++... +.+|.+|...|+. .|++ .+..+.
T Consensus 538 g~~e~~~~li~~L~~-~-~dp~vRygaa~alglAyaGTGn~-~aIq~LL~~~~ 587 (963)
T 4ady_A 538 GRQELADDLITKMLA-S-DESLLRYGGAFTIALAYAGTGNN-SAVKRLLHVAV 587 (963)
T ss_dssp TCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHHHHTTTSCCH-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh-C-CCHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHhc
Confidence 777766666665443 2 234333 3467777788885 4444 444444
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.67 E-value=32 Score=28.17 Aligned_cols=27 Identities=19% Similarity=0.055 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 022205 130 LDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (301)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (301)
.++..+..+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467788888888888888888877765
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.64 E-value=37 Score=32.48 Aligned_cols=160 Identities=9% Similarity=-0.042 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHhCC---C---ch----hhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 022205 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP---E---SK----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP- 132 (301)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~---~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~- 132 (301)
..+..-+|.++ .|...+++..+...+.... . +. .+...+|.++...++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 34444555544 4555578887777775432 0 11 234456666665555 467777777776443222
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHH----HHHHH
Q 022205 133 -VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY----HLAYA 207 (301)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~la 207 (301)
.+-..+|.++...|+.+-....+..+.+...++..-...+|..+...|+.+.+-...+.... . .++.. -..+|
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~-~-~dp~vRygaa~alg 567 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA-S-DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH-C-SCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh-C-CCHHHHHHHHHHHH
Confidence 24556788888888876666666665553322222223444445556666655544444333 2 33433 23456
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 208 DVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
.+|...|+ ...-...+..+..
T Consensus 568 lAyaGTGn---~~aIq~LL~~~~~ 588 (963)
T 4ady_A 568 LAYAGTGN---NSAVKRLLHVAVS 588 (963)
T ss_dssp HHTTTSCC---HHHHHHHHHHHHH
T ss_pred HHhcCCCC---HHHHHHHHHHhcc
Confidence 66777887 4433335554443
No 270
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=75.58 E-value=13 Score=32.38 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC--------CC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCC
Q 022205 136 KRRVAIAKAQGNFPTAIEWLNKYLETFM--------AD--HDAWRELAEIYVSLQMYKQAAFCYEELILS-QPTV 199 (301)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~ 199 (301)
..+..+|++.|+..-+...++..-...+ .. ....+.+|..++..++|.+|..++..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3455677777777777777765433221 11 345667788887788888888888877776 5543
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.70 E-value=22 Score=25.94 Aligned_cols=57 Identities=5% Similarity=-0.059 Sum_probs=31.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCC---HH-----HH-HHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMAD---HD-----AW-RELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-----~~-~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
-+..++..|+|=+|-.+++.+....+.. -. +. ...|..+...|+...|...+.+++.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555566666666666666554332 11 11 2233444556777777777777764
No 272
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.60 E-value=24 Score=25.73 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HH-----HH-HHHHHHHHHcCChhHHHHHHHHHHHh
Q 022205 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PV-----LH-KRRVAIAKAQGNFPTAIEWLNKYLET 161 (301)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~-----~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (301)
+..+..++..|+|-+|-+.++.+....+.. .. +. ...|..+...|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555666677777777777776655433 11 22 23344556678888888888888764
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.43 E-value=29 Score=26.30 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHhCCCh--HH-HH-HHHHHHHHhCCC------ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 022205 62 DVWTLYEQVSIAAMDCQCL--DV-AK-DCIKVLQKQFPE------SK---RVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~--~~-A~-~~~~~~~~~~p~------~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 127 (301)
+.|.-|.....-.+-.|.- +. -. .++++++..+.+ ++ .+|...+..+ ..+...++..+|.-+...
T Consensus 31 ~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~ 109 (202)
T 3esl_A 31 DLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKG 109 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCC
Confidence 3455555444444434433 22 22 466666665432 22 2333333332 123355666666655553
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205 128 -NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (301)
Q Consensus 128 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (301)
....+..|...|..+...|++.+|..+|+..++..
T Consensus 110 IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 110 IGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455566666666666777777777777766654
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=71.10 E-value=8.4 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 168 AWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 168 ~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
.+...+..+...|+|++||+|.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44456677777777777777766654
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.04 E-value=13 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 204 ~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
..+|..+...|+ ++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~---~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGD---YEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHHcCC
Confidence 457888888888 88888888888888774
No 276
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=70.86 E-value=16 Score=31.80 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=53.9
Q ss_pred hhHHHHH---HHHHHHHhCCChHHHHHHHHHHHHhCC----------CchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 022205 62 DVWTLYE---QVSIAAMDCQCLDVAKDCIKVLQKQFP----------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (301)
Q Consensus 62 ~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 127 (301)
..+.+++ ++-..|++.++..-+..+++.+-...+ ......+.+|.++...++|.+|.+.+..|+..
T Consensus 171 kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~l 250 (455)
T 3t5v_B 171 KQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSL 250 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4555554 556789999999999999877655432 12345778999999999999999999999998
Q ss_pred CCCC
Q 022205 128 NPLD 131 (301)
Q Consensus 128 ~p~~ 131 (301)
.|..
T Consensus 251 cp~~ 254 (455)
T 3t5v_B 251 LNLP 254 (455)
T ss_dssp HHCC
T ss_pred CCcc
Confidence 6654
No 277
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=70.80 E-value=7.5 Score=24.79 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=7.5
Q ss_pred HcccHHHHHHHHHHHH
Q 022205 178 SLQMYKQAAFCYEELI 193 (301)
Q Consensus 178 ~~~~~~~A~~~~~~al 193 (301)
..|++++|+.+|..++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445555554444444
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.49 E-value=15 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=14.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (301)
+|..+...|++++|..+|-+|+..+|.-
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4555555555555555555555555543
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=69.35 E-value=8.3 Score=24.55 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=7.0
Q ss_pred cccHHHHHHHHHHHH
Q 022205 179 LQMYKQAAFCYEELI 193 (301)
Q Consensus 179 ~~~~~~A~~~~~~al 193 (301)
.|++++|+.+|..++
T Consensus 24 ~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 24 EGKVEDAITYYKKAI 38 (83)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444443
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=68.60 E-value=14 Score=28.11 Aligned_cols=91 Identities=11% Similarity=-0.051 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 022205 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA-----WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (301)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 207 (301)
...+.+|.++...++|.+|...|..++...|.+... +..|--+-+-.|++.. ...+++ .+. ..+..+.
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L~ 87 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEVT 87 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHHH
Confidence 467789999999999999999999999998876432 2233333345566543 222321 111 1344554
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 208 DVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
. ..+.|+...++++++.++..+.
T Consensus 88 ~-Avr~Gdl~~f~~~l~~~~~~f~ 110 (203)
T 3t5x_A 88 R-AVSEGNLLLLHEALAKHEAFFI 110 (203)
T ss_dssp H-HHHHTCHHHHHHHHHHTHHHHH
T ss_pred H-HHHhCCHHHHHHHHHHhHHHHH
Confidence 4 4577774445555555544433
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.31 E-value=15 Score=27.91 Aligned_cols=33 Identities=15% Similarity=-0.023 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 022205 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP 132 (301)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 132 (301)
..+.+|.++...++|.+|.+.+..|+...|...
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 445566666666666666666666666655543
No 282
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.88 E-value=56 Score=27.01 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHH-------HH---------hhCCCCHHHHHHHHH-HHHHcCCCCcHHHHHHHH
Q 022205 164 ADHDAWRELAEIYVSLQMYKQAAFCYEE-------LI---------LSQPTVPLYHLAYAD-VLYTLGGVDNILLAKKYY 226 (301)
Q Consensus 164 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~-------al---------~~~p~~~~~~~~la~-~~~~~~~~~~~~~A~~~~ 226 (301)
.+|..+..+|..|.+.+++.+|..+|-- .+ +..|.....+...|. .|...++ ...|...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n---~~~A~~~~ 210 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVAN---VRAANTAY 210 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCC---HHHHHHHH
Confidence 5688899999999999999988777621 00 112333333333333 3567777 88887765
Q ss_pred HHHh
Q 022205 227 ASTI 230 (301)
Q Consensus 227 ~~al 230 (301)
....
T Consensus 211 ~~f~ 214 (336)
T 3lpz_A 211 RIFT 214 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.88 E-value=28 Score=26.89 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCC---------HHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 152 IEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 152 ~~~~~~~l~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
..++++++..+.++ ...|..++.. .+++..+|.-... +.-..+..|..+|..+...|+ +.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~ 167 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGL---FQ 167 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCC---HH
Confidence 45666666554333 2344444442 2355566666554 345667778888888888888 88
Q ss_pred HHHHHHHHHhcccC
Q 022205 221 LAKKYYASTIDLTG 234 (301)
Q Consensus 221 ~A~~~~~~al~~~p 234 (301)
+|...|+.+++..-
T Consensus 168 ~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 168 KADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 88888888887654
No 284
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=64.57 E-value=15 Score=23.83 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (301)
..+..+...+..++..|.|++|+.+..++..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3566777888999999999999888776654
No 285
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=64.08 E-value=11 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=19.8
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCC
Q 022205 171 ELAEIYVSLQMYKQAAFCYEELILSQPT 198 (301)
Q Consensus 171 ~lg~~~~~~~~~~~A~~~~~~al~~~p~ 198 (301)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4677777777777777777777766654
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.53 E-value=49 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 196 (301)
+..|...|..+...|++.+|..+|+.++...
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444455555555555555555555555443
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.48 E-value=43 Score=24.46 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCC---------HHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcHH
Q 022205 152 IEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNIL 220 (301)
Q Consensus 152 ~~~~~~~l~~~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~~ 220 (301)
..++++++....++ ...|..++... +.+..+|..... +....+..|...|..+...|+ +.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~---~~ 113 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEAREN---FR 113 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTC---HH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC---HH
Confidence 44566666554332 33455555443 335556666554 445667788888888888888 99
Q ss_pred HHHHHHHHHhcccC
Q 022205 221 LAKKYYASTIDLTG 234 (301)
Q Consensus 221 ~A~~~~~~al~~~p 234 (301)
+|...|+.+++...
T Consensus 114 ~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 114 KADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999888754
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=61.94 E-value=44 Score=27.96 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 131 DPVLHKRRVAIAKAQGN--FPTAIEWLNKYLETF-----MADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 131 ~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~~-----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
.|.++.+||.+.-..-. -..++.+|.+++... ..+.--+..+|..+++.+++.+|+.++-.+-.
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 34455555554443211 122666677666531 23345567788888899999999988877653
No 289
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=59.48 E-value=34 Score=22.30 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=12.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDN 128 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~ 128 (301)
|..++..|+|-+|-+.++......
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC
Confidence 444444455555555555555444
No 290
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=56.56 E-value=41 Score=22.39 Aligned_cols=86 Identities=17% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 022205 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (301)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 145 (301)
.+..+|..---....++|..+.+-+.. .++..-+...+...+...|+|++|....+... .++.--.++.+..+.
T Consensus 9 lLAE~AL~gTG~H~HqEA~tIAdwL~~-~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rl 82 (116)
T 2p58_C 9 LLAEIALIGTGNHYHEEANCIAEWLHL-KGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRL 82 (116)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhc
Confidence 344455555555667777766654443 44455555666777788888888877665432 333333455566677
Q ss_pred CChhHHHHHHHH
Q 022205 146 GNFPTAIEWLNK 157 (301)
Q Consensus 146 g~~~~A~~~~~~ 157 (301)
|--+++...+.+
T Consensus 83 Gl~s~le~rL~~ 94 (116)
T 2p58_C 83 GLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 777776666533
No 291
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.20 E-value=88 Score=25.82 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHH----------------HHHhcCCCHHHHHHHHHH-HHHcccHHHHHHHHHH
Q 022205 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNK----------------YLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEE 191 (301)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~l~~~p~~~~~~~~lg~~-~~~~~~~~~A~~~~~~ 191 (301)
-.++..+..+|..+...+++.+|..+|-- ..+..|...+.+...|.+ |...++...|...+..
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45677777888888887777777666521 001123444544444443 5667888888776554
Q ss_pred HHh----hCC------------------CCHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCCCchhHhhhHHHHH
Q 022205 192 LIL----SQP------------------TVPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLCS 248 (301)
Q Consensus 192 al~----~~p------------------~~~~~-~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l~~~~ 248 (301)
-++ .+| ..|.. ...+.......+....|..-...|...++.+|......+-.++..|
T Consensus 213 f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~Y 292 (336)
T 3lpz_A 213 FTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMY 292 (336)
T ss_dssp HHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHH
T ss_pred HHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 442 222 23321 1222233344554334666777777777777621444445555555
Q ss_pred HHH
Q 022205 249 SAI 251 (301)
Q Consensus 249 ~~l 251 (301)
..+
T Consensus 293 Fgi 295 (336)
T 3lpz_A 293 FGI 295 (336)
T ss_dssp HCC
T ss_pred cCC
Confidence 543
No 292
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.07 E-value=43 Score=22.23 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=53.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 022205 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (301)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 146 (301)
+..+|..---....++|..+.+-+.. .++...+...+...+...|+|++|....+... .++.--.++.+..+.|
T Consensus 9 LAE~AL~gTG~H~HqEA~tIAdwL~~-~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlG 82 (115)
T 2uwj_G 9 LAELALAGSGQHCHEEALCIAEWLER-LGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLG 82 (115)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcc
Confidence 33445544555677888766655443 45555556666777888899988876554432 3444444566777888
Q ss_pred ChhHHHHHHHH
Q 022205 147 NFPTAIEWLNK 157 (301)
Q Consensus 147 ~~~~A~~~~~~ 157 (301)
--+++...+.+
T Consensus 83 l~s~le~rL~~ 93 (115)
T 2uwj_G 83 LGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 87777776644
No 293
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.22 E-value=74 Score=27.22 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=25.8
Q ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 022205 151 AIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 151 A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
++.+|.+++.. ...+.--|..+|..+++.+++.+|+.++-.+-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 45555555542 12234445667777777777777777776654
No 294
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=52.10 E-value=46 Score=21.63 Aligned_cols=54 Identities=15% Similarity=-0.055 Sum_probs=24.9
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 022205 173 AEIYVSLQMYKQAAFCYEELILSQPTVP------LYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (301)
Q Consensus 173 g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~~~~A~~~~~~al~ 231 (301)
|..++..|+|=+|-++++.+....|+.. .+....|..+...|+ . |...+.+++.
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn---~--a~~ll~~a~~ 67 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGR---P--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTC---C--CHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCc---H--HHHHHHHHHH
Confidence 3344444555555555555554443211 122223344444555 4 6666666654
No 295
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.06 E-value=74 Score=24.02 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCch-h----hHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 022205 81 DVAKDCIKVLQKQFPESK-R----VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (301)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~-~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 143 (301)
+.|+.+++.+-...+.-. . +-.....++...|.+++|.+.+++....++++......|..+-.
T Consensus 95 ESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 566666665554443111 0 11233457788899999999999998888776665554444433
No 296
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=51.78 E-value=1.1e+02 Score=25.74 Aligned_cols=86 Identities=12% Similarity=-0.050 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 137 (301)
......++.+.+++.| +|.-|+..+-.+-+.+|.. +....+ |.+|+..-+... +..+...|..
T Consensus 234 l~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L----------~~~AI~sa~~yY--~n~HvYPYty 301 (472)
T 3re2_A 234 LSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEEL----------FKEAITVAKREY--SDHHIYPYTY 301 (472)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHH----------HHHHHHHHHHHS--TTCCSHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHH----------HHHHHHHHHHHh--ccCCccchhh
Confidence 4445567778888876 5677888888887777632 221110 234444433332 2345667788
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 022205 138 RVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
+|-.+.+.+++.+|+..+-.+-.
T Consensus 302 lgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 302 LGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHHHHH
Confidence 89999999999999998877654
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.11 E-value=1.2e+02 Score=26.03 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 022205 62 DVWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (301)
Q Consensus 62 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 136 (301)
+......++.+.+++.| +|.-|+..+-.+-+.+|.. +....+ |.+|+..-+... ...+...|.
T Consensus 255 el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L----------~~~AI~sa~~~Y--~n~HvYPYt 322 (550)
T 3u84_A 255 ELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTL----------YHKGIASAKTYY--RDEHIYPYM 322 (550)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHH----------HHHHHHHHHHHS--TTCCSHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHH----------HHHHHHHHHHHh--ccCCcccee
Confidence 34555567788888876 5677888888888887732 221110 234444433332 234566788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~ 160 (301)
.+|-.+.+.+++.+|+..+-.+-.
T Consensus 323 YlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 323 YLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ecchhhhhcchHHHHHHHHHHHHH
Confidence 889999999999999988877654
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.29 E-value=80 Score=23.89 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCC------C---HHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcHHH
Q 022205 153 EWLNKYLETFMA------D---HDAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNILL 221 (301)
Q Consensus 153 ~~~~~~l~~~p~------~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~~~ 221 (301)
.++++++....+ | ...|...+..+ ..++..++..+|.-... +.-..+..|...|..+...|+ +.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~ 133 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF---FLE 133 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC---HHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---HHH
Confidence 567777765432 3 34566666654 23346677788877764 445668888899999999999 999
Q ss_pred HHHHHHHHhcccCC
Q 022205 222 AKKYYASTIDLTGG 235 (301)
Q Consensus 222 A~~~~~~al~~~p~ 235 (301)
|...|+.+++..-.
T Consensus 134 A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 134 AKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999987543
No 299
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=49.95 E-value=86 Score=26.81 Aligned_cols=76 Identities=8% Similarity=-0.003 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCC--hhHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh------CCC
Q 022205 132 PVLHKRRVAIAKAQGN--FPTAIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS------QPT 198 (301)
Q Consensus 132 ~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~ 198 (301)
|.++.+||.+....-. .+.++.+|++++.. ...+...|..+|..+++.+++.+|+.++-.+-.. ..+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 4455555554433211 12356666666653 1233455667788888888888888887776532 234
Q ss_pred CHHHHHHHH
Q 022205 199 VPLYHLAYA 207 (301)
Q Consensus 199 ~~~~~~~la 207 (301)
+...|..+-
T Consensus 342 DeEiYke~~ 350 (489)
T 4gq4_A 342 DEEIYKEFF 350 (489)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 455554443
No 300
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=45.86 E-value=43 Score=19.45 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=22.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE 118 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 118 (301)
.+|...--....++|..+.+-+.........+...+...+...|+|++|+
T Consensus 11 e~AL~~TG~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 11 ELALAGTGHHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHccchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 33444444456677766555444332223344455566677777777764
No 301
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.68 E-value=21 Score=22.36 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=13.6
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Q 022205 170 RELAEIYVSLQMYKQAAFCYEELI 193 (301)
Q Consensus 170 ~~lg~~~~~~~~~~~A~~~~~~al 193 (301)
..+|+=|...|+|+.|+.+|+.++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH
Confidence 344555555566666666665555
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.79 E-value=84 Score=22.54 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCC------CH---HHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCCCcH
Q 022205 151 AIEWLNKYLETFMA------DH---DAWRELAEIYVSLQMYKQAAFCYEELIL--SQPTVPLYHLAYADVLYTLGGVDNI 219 (301)
Q Consensus 151 A~~~~~~~l~~~p~------~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~~ 219 (301)
-..++++++....+ |+ ..|...+... +++..+|.-... +....+..|...|..+...|+ +
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~ 117 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGE---L 117 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTC---H
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---H
Confidence 34556666655433 32 3444444432 336777776664 445667888889999999999 9
Q ss_pred HHHHHHHHHHhcccC
Q 022205 220 LLAKKYYASTIDLTG 234 (301)
Q Consensus 220 ~~A~~~~~~al~~~p 234 (301)
.+|...|+.+++...
T Consensus 118 ~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 118 QHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998754
No 303
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=44.22 E-value=59 Score=29.72 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 022205 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (301)
Q Consensus 167 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 215 (301)
......|...+..|+|.-|......++..+|++..+...++.+|..+|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999999999999999988885
No 304
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.25 E-value=38 Score=25.56 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=26.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGIL 107 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~ 107 (301)
+...+|++.|.+++|..++++....++.+......+..+
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 446789999999999999999998877666555444443
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=38.88 E-value=30 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 203 HLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 203 ~~~la~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
...+|.-+...|+ |+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~Gn---Ydta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGN---YDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---hHHHHHHHHHHHHH
Confidence 4567888999999 99999999998875
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.87 E-value=77 Score=20.43 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 022205 149 PTAIEWLNKYLET 161 (301)
Q Consensus 149 ~~A~~~~~~~l~~ 161 (301)
+.|+.++.++++.
T Consensus 13 ~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 13 TAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554443
No 307
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=38.73 E-value=81 Score=28.80 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc
Q 022205 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (301)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~ 181 (301)
.....+...+..|+|.-|.++++.++..+|++..+...++.+|.++|.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 455667777889999999999999999999999999999999888764
No 308
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=38.06 E-value=41 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhcc
Q 022205 208 DVLYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 208 ~~~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.-.-..|+ +++|+.+|..+++.
T Consensus 27 ve~D~~g~---y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 27 VKADKEGN---AEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHhcc---HHHHHHHHHHHHHH
Confidence 33456677 77777777777654
No 309
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=37.51 E-value=2e+02 Score=24.70 Aligned_cols=88 Identities=11% Similarity=0.010 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 022205 63 VWTLYEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (301)
Q Consensus 63 ~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 139 (301)
...+...+.+.+++.| .|.-|+..+-.+.+..|.....-.. .-|.+|+..-++... ......|..+|
T Consensus 241 l~~lQq~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~grp~~~--------~Lf~~AI~~ar~~Y~--~~hvYPYtYlg 310 (489)
T 4gq4_A 241 LLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPL--------TLYHKGIASAKTYYR--DEHIYPYMYLA 310 (489)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTSCCHH--------HHHHHHHHHHHHHST--TCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhcchhhhcccCHhhcCCCCCCCCHH--------HHHHHHHHHHHHhcc--cCcccceeecc
Confidence 4455556677777765 5777888888887777643221000 013444444444333 33466788889
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 022205 140 AIAKAQGNFPTAIEWLNKYLE 160 (301)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~ 160 (301)
-.+.+.+++.+|+..+..+-.
T Consensus 311 G~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 311 GYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHhhhhhh
Confidence 999999999999999887654
No 310
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=37.51 E-value=92 Score=26.81 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 149 PTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
+..+..++.++..-|. -..++..+|.+|+..|+|++|+...++++.
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3445555555554443 245778899999999999999999999885
No 311
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.39 E-value=47 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 149 (301)
..++...|.|++|.+.+++....+|++......|..+-...+-+.
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H 165 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAH 165 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCccc
Confidence 445667788888888888887776666666666666665555433
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.29 E-value=65 Score=20.49 Aligned_cols=15 Identities=47% Similarity=0.691 Sum_probs=6.9
Q ss_pred cccHHHHHHHHHHHH
Q 022205 179 LQMYKQAAFCYEELI 193 (301)
Q Consensus 179 ~~~~~~A~~~~~~al 193 (301)
.|++++|+.+|..++
T Consensus 29 ~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 29 ESRYPQALVCYQEGI 43 (86)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 444444444444443
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.95 E-value=1.2e+02 Score=21.74 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=22.0
Q ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 022205 117 AEKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (301)
Q Consensus 117 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (301)
+...|.-+... ....+..|...|..+...|++.+|..+|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44444444432 23334444455555555555555555555555543
No 314
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.92 E-value=47 Score=20.97 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHcCCCCcHHHHHHHHHHHhcc
Q 022205 210 LYTLGGVDNILLAKKYYASTIDL 232 (301)
Q Consensus 210 ~~~~~~~~~~~~A~~~~~~al~~ 232 (301)
.-..|+ +++|+.+|..+++.
T Consensus 21 ~D~~g~---y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 21 ADKEGK---VEDAITYYKKAIEV 40 (83)
T ss_dssp HHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHhcc---HHHHHHHHHHHHHH
Confidence 356666 77777777666654
No 315
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=35.70 E-value=98 Score=26.71 Aligned_cols=45 Identities=24% Similarity=0.213 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 150 TAIEWLNKYLETFMAD--------HDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 150 ~A~~~~~~~l~~~p~~--------~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
..+..++.++..-|.. ..++..+|.+|+..|+|++|+...++++.
T Consensus 172 ~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 172 EIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3444555555544432 56788899999999999999999999885
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.37 E-value=1.5e+02 Score=22.74 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccc
Q 022205 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (301)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~ 181 (301)
....++...|.|++|...+++....+|.+-.....|..+-...+-
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 344567889999999999999998877776666777666655544
No 317
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.18 E-value=29 Score=23.60 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=11.6
Q ss_pred ccHHHHHHHHHHHHhhCC
Q 022205 180 QMYKQAAFCYEELILSQP 197 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p 197 (301)
..+++|..+..++|.++.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 345677777777776653
No 318
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=32.58 E-value=1.2e+02 Score=26.45 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
..++..+|.+|+..++|++|+.+.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 457788999999999999999999999864
No 319
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.00 E-value=1.2e+02 Score=26.11 Aligned_cols=29 Identities=10% Similarity=-0.102 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 126 (301)
..+..++|++++..|+|++|....++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45677889999999999999999998886
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=31.39 E-value=89 Score=19.59 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=5.4
Q ss_pred ccHHHHHHHHHHH
Q 022205 180 QMYKQAAFCYEEL 192 (301)
Q Consensus 180 ~~~~~A~~~~~~a 192 (301)
|++++|+.+|..+
T Consensus 27 g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 27 TQYEEAYTAYYNG 39 (85)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444333
No 321
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.69 E-value=1.1e+02 Score=26.48 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 149 PTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 149 ~~A~~~~~~~l~~~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
+..++.++.++..-|. -..++..+|.+|+..|+|++|+...++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3445555555554443 2457888999999999999999999999864
No 322
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.66 E-value=2.4e+02 Score=23.66 Aligned_cols=90 Identities=8% Similarity=-0.012 Sum_probs=58.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh---c--
Q 022205 105 GILLEAKGLWAEAEKAYSSLLEDN-----------------PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET---F-- 162 (301)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~-- 162 (301)
..+.....+.++|++.++.....- -....+...++..|...|+.++|...++++-.. .
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 334556678888888887664311 011235667788888899999999888887643 1
Q ss_pred CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 022205 163 MA---DHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (301)
Q Consensus 163 p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 194 (301)
++ ....+...+..+...+++..+...+-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 11 123444556667778888887777666664
No 323
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=30.50 E-value=83 Score=23.01 Aligned_cols=49 Identities=12% Similarity=-0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcccCC
Q 022205 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.|...+..+...+|....+.-.+..++....+ ....+..|...+..+|.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d---~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQA---IAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCHH
Confidence 44455555555666555666677777777777 77777777777777774
No 324
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=28.85 E-value=1.5e+02 Score=25.78 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 99 RVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
.++.++|++++..++|++|....++++..
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45667778888888888888888777764
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=28.01 E-value=1.3e+02 Score=25.86 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
..++.++|++++..|+|++|....++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 456788899999999999999999988863
No 326
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=26.92 E-value=1.6e+02 Score=20.35 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=35.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHH---HHhCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 69 QVSIAAMDCQCLDVAKDCIKVL---QKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~---~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
.....++..++.+..+..+..+ +...|.+. .-.......-.+..+|..++++....
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~t 103 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMKS 103 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3344566889999999888776 33445433 33333334445677888888877643
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.67 E-value=1.1e+02 Score=20.85 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHH
Q 022205 149 PTAIEWLNKYLE 160 (301)
Q Consensus 149 ~~A~~~~~~~l~ 160 (301)
+.|+.++.++++
T Consensus 16 ~kAi~lv~~Ave 27 (117)
T 2cpt_A 16 QKAIDLASKAAQ 27 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555543
No 328
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.41 E-value=1.4e+02 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
..++.++|++++..|+|++|....++++..
T Consensus 202 ~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 202 WAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 356788999999999999999999999874
No 329
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.74 E-value=4.4e+02 Score=24.06 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=12.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 022205 104 EGILLEAKGLWAEAEKAYSSL 124 (301)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~a 124 (301)
.|.-....|++++|+..|.-+
T Consensus 449 aA~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 449 AARRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 344555666666666655544
No 330
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.47 E-value=2.4e+02 Score=21.59 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhcccCC
Q 022205 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL--GGVDNILLAKKYYASTIDLTGG 235 (301)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~~~~A~~~~~~al~~~p~ 235 (301)
.+-..|+.+|..++...|.++.-....-.-|... .+ -.-.+.+|+.+...+|.
T Consensus 106 ~rrr~Ale~y~~ALq~~pP~~~~vl~aLk~yirae~KD---R~Htl~hf~Hv~~~dpe 160 (219)
T 3pmr_A 106 DQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKE---QRHTLRHYQHVAAVDPE 160 (219)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHccCHH
Confidence 3457899999999998877765333322323322 24 56688889998888885
No 331
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.52 E-value=2.4e+02 Score=24.69 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 022205 166 HDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (301)
Q Consensus 166 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 195 (301)
..++..+|.+|+..++|++|+...++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888999999999999999999999853
No 332
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.16 E-value=2.4e+02 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 022205 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (301)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 127 (301)
..+..++|++++..|+|++|....++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 346788999999999999999999999864
Done!