BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022209
(301 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 170/263 (64%), Gaps = 17/263 (6%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
MAK ISLYGF + +KEFLE ++GEGTV V V Q K GSR +AIVEFTT +AA+
Sbjct: 1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQ 60
Query: 59 LIKC--LASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
IK L L YGNSYLKA D R T K Y + D++ L+FGC +SK+KFSV
Sbjct: 61 NIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYSM-DNITLHFGCQVSKEKFSV 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LW+Q++VSVK ++RKF FFL++ S +YKLELSYE+I+QIELHRPRG KYL++Q+ G
Sbjct: 120 LWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLG 179
Query: 177 VPMIYENEIHR------------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFY 224
P I++ + + +R+VDF+PS I QSS +CLELP + +P ++F
Sbjct: 180 GPKIFKKDTSKLSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVC 239
Query: 225 YKESPVQFTLVPGSVFSCNSDLV 247
YKE F L GS F C SDLV
Sbjct: 240 YKEDEGHFILEKGSTFCCKSDLV 262
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/271 (44%), Positives = 155/271 (57%), Gaps = 28/271 (10%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQ--NKGSRAHAIVEFTTVKAAE 58
M+K + + GF S +A AV+ FLE HTG GTV +++ + G+R +AIV+FTT +AAE
Sbjct: 1 MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRT-PHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVL 117
I LA+ RL YG+SYL A R P R H + + L+FG SK+KFS +
Sbjct: 61 QIISLANPRLWYGHSYLNARPMDRDIIPQ--PRSFLHTM--ESVTLHFGYQTSKEKFSAV 116
Query: 118 WSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGV 177
WS NVSV +RK FFLS+ +YKL L +E+IWQIELHRPRG KYL+IQLYG
Sbjct: 117 WSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGA 176
Query: 178 PMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHIP 216
P IYE ++ VR DF PS I SS +CLELP+ +P
Sbjct: 177 PRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLP 236
Query: 217 KALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
++FFYYKE+ F L G FS N DLV
Sbjct: 237 NFNENFFYYKENEGTFVLESGLTFSRNPDLV 267
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/273 (43%), Positives = 157/273 (57%), Gaps = 29/273 (10%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAE 58
M K I LYGF + V+ VK F+E +TGEGTV +++ KG RA AI++FTT +A
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60
Query: 59 LIKCLASV---RLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFS 115
+ A+ L YG SYLKA + +R R DD+KL+FGC ISK +FS
Sbjct: 61 SMMSRANNILRTLRYGTSYLKAREMERDI---VPRPRVFLHSLDDVKLSFGCQISKGRFS 117
Query: 116 VLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLY 175
VLW +++V V S +RK F S+ +V YKLELSYE+IW+IELHRPR +YL+IQL
Sbjct: 118 VLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLL 177
Query: 176 GVPMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAH 214
G P ++EN++ +R +DF P S I QSS ICLELP+
Sbjct: 178 GAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQ 237
Query: 215 IPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
+P ++F YY+ES Q+TL G FS N LV
Sbjct: 238 LPNFRENFAYYEESERQYTLQTGVPFSQNWGLV 270
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 157/262 (59%), Gaps = 18/262 (6%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M+K I +YGF S VSA +KEFLE +TGEGT+ +E+ Q + S HA V+FT+ + AE
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
I L ++ YG +YLKA + R H D + L+FGC +S ++F VLW
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIP-KPRAFLHSM--DRITLHFGCQMSDERFCVLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
NVSVK S +RKF FFLS+ S +YKLELSYE+IWQI+L PRG K+L+IQL G P
Sbjct: 118 KAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAP 177
Query: 179 MIYENEI-------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYY 225
IYE ++ VRE+DF PS I QS +CLELP + +P ++F YY
Sbjct: 178 QIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYY 237
Query: 226 KESPVQFTLVPGSVFSCNSDLV 247
KE+ +F L GS +S N LV
Sbjct: 238 KENDGKFILESGSSYSHNLHLV 259
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/261 (45%), Positives = 156/261 (59%), Gaps = 18/261 (6%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAE 58
M K I +YG S+VSA +KEFLE +TGEGT+ +E+ Q K S HA V+FT+++ AE
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI LA +L YG +YLKA + R H D + L+FG +S ++F VLW
Sbjct: 61 LIISLAK-QLWYGGNYLKAREMDLDIIP-KPRTFLHSM--DRITLHFGYQMSNERFCVLW 116
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
NVSVK +RKF FFLS+ S +YKLELS E+IWQI+L PRG K+L+IQL P
Sbjct: 117 KAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAP 176
Query: 179 MIYENEI------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IYE ++ VRE+DF PS SI QSS +CLELP + +P ++F YK
Sbjct: 177 QIYEKDVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYK 236
Query: 227 ESPVQFTLVPGSVFSCNSDLV 247
E+ +F L G+ FS N LV
Sbjct: 237 ENDRKFILESGASFSGNLHLV 257
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 152/273 (55%), Gaps = 33/273 (12%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS--RAHAIVEFTTVKAAE 58
M K I L+GF S V +VK F+EG TG GT+ + ++KG R +AI++FT + A+
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGD----DLKLNFGCHISKDKF 114
I A+ RL YG SYLKA + + +P + D L+L+ GC ISK+ F
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDI-------LPDPLVFDYNFKALRLHLGCQISKESF 113
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
SVLW++ NVSV ++RK FF+SY VDY L L YE+IWQ+ELH+P G YL+IQL
Sbjct: 114 SVLWTESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQL 173
Query: 175 YGVPMIYEN--------------------EIHRVREVDFAPSSSIEQSSDICLELPSRAH 214
+G P IYE + R DF PS SI QS+ +CLE+P
Sbjct: 174 FGAPRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQ 233
Query: 215 IPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
+P F Y+KE +FTLV GS +S N +LV
Sbjct: 234 LPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLV 266
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 157/269 (58%), Gaps = 25/269 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS-RAHAIVEFTTVKAAEL 59
M K I +YGF S VSA VK FLEG+TG TV +++ Q+K S RA AIV+FT A L
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LA+ RL YG SYLKA + + T K + + + + + +NF CH+S++KF VLW
Sbjct: 61 IIRLANQRLYYGRSYLKAREME--TDIVPKPRVFLHTM-ERVTVNFDCHVSEEKFYVLWK 117
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
+NV++ + +RK EF LSY S YKLEL YE+IWQIEL P +K+L+IQL+G P
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 180 IYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKA 218
IYE E+ VR DF S+ I QSS +CLELP +P
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNF 237
Query: 219 LKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
++F YYKE+ + L GS +SCN LV
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLV 266
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 151/273 (55%), Gaps = 33/273 (12%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS--RAHAIVEFTTVKAAE 58
M K I L+GF S V +VK F+EG TG GT+ + ++KG R +AI++FT + A+
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGD----DLKLNFGCHISKDKF 114
I A+ RL YG SYLKA + + +P + D L+L+ GC ISK+ F
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDI-------LPDPLVFDYNFKALRLHLGCQISKESF 113
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
SVLW++ NVSV D+RK FF+SY VDY L L YE+IWQ+ELH+P G YL+IQL
Sbjct: 114 SVLWTESNVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQL 173
Query: 175 YGVPMIYEN--------------------EIHRVREVDFAPSSSIEQSSDICLELPSRAH 214
+G P IYE + R DF PS SI QS+ +CLE+
Sbjct: 174 FGAPRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQ 233
Query: 215 IPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
+P F Y+KE +FTLV GS +S N +LV
Sbjct: 234 LPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLV 266
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/276 (44%), Positives = 160/276 (57%), Gaps = 35/276 (12%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSR-AHAIVEFTTVKAAEL 59
M K I ++GF +SA AVK FLE HTG GTV +EV Q+KG R + A V+F + K+AEL
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRSFARVQFASNKSAEL 60
Query: 60 IKCLASVRLSYGNSYLKASD-----AQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKF 114
I LAS+ L YG SYLKA + Q RT + Q D + LNFGC IS KF
Sbjct: 61 IIDLASMGLYYGPSYLKAWEMNTDIVQPRT---------YVQHMDGVTLNFGCQISDKKF 111
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
+VL S++ VS+K ++K FFLSY S DYKL+LSYE+IWQ+ LHRP G A++L++QL
Sbjct: 112 AVLGSKD-VSIKFGIGLKKIYFFLSYGSSDYKLQLSYENIWQVVLHRPYGQKAQFLLLQL 170
Query: 175 YGVPMIYEN-------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKD 221
+G P IY+ + VR DF P S I SS +CLE + +P +
Sbjct: 171 FGAPRIYKRLEESCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGIRLPNFRES 229
Query: 222 FFYYKESPVQFTLVPGSVFSCNSDL-----VHMTHG 252
FFYYKES Q L G FS + L VH+ +G
Sbjct: 230 FFYYKESGNQVILRTGFTFSFSQKLALVPIVHLPNG 265
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 156/269 (57%), Gaps = 25/269 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS-RAHAIVEFTTVKAAEL 59
M K I +YGF S VSA VK FLEG+TG TV +++ Q+K S RA AIV+FT A L
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LA+ RL YG SYLKA + + T K + + + + + +NFGC +S++KF VLW
Sbjct: 61 IIRLANQRLYYGRSYLKAREME--TDIVPKPRVFLHTM-ERVTVNFGCQVSEEKFYVLWK 117
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
+NV++ + +RK EF LSY S YKLEL YE+IWQIEL P +K+L+IQL+G P
Sbjct: 118 ADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPR 177
Query: 180 IYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKA 218
IYE E+ VR DF S+ I QSS + LELP +P
Sbjct: 178 IYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNF 237
Query: 219 LKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
++F YYKE+ + L GS +SCN LV
Sbjct: 238 RENFAYYKENEGRLVLESGSSYSCNLSLV 266
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 123/276 (44%), Positives = 158/276 (57%), Gaps = 35/276 (12%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSR-AHAIVEFTTVKAAEL 59
M K I ++GF +SA AVK+FLE HTG GTV +EV Q+KG R A A V+F K+AE
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60
Query: 60 IKCLASVRLSYGNSYLKASD-----AQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKF 114
I LAS L YG SYLKA + Q RT + + D + LNFGC IS KF
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMKTDIVQPRT---------YVEHMDGVTLNFGCQISDKKF 111
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
+VL S++ VS+K ++K FFLS+ S DYKL+LSYE+IWQ+ LHRP G A++L++QL
Sbjct: 112 AVLGSKD-VSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQL 170
Query: 175 YGVPMIYEN-------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKD 221
+G P IY+ + VR DF P S I SS +CLE + +P +
Sbjct: 171 FGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFRNGVQLPNFSES 229
Query: 222 FFYYKESPVQFTLVPGSVFSCNSDL-----VHMTHG 252
FFYYKES QF L G FS + L VH+ G
Sbjct: 230 FFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEG 265
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 150/250 (60%), Gaps = 16/250 (6%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQ--NKGSRAHAIVEFTTVKAAEL 59
K ISLY F + ++ +KEFLE ++G+GTV V+V Q ++GSR A V+FTT +AA+
Sbjct: 41 GKTISLYRFRTVETSEDIKEFLEEYSGDGTVVSVDVDQTISEGSRTKAKVQFTTSEAAQK 100
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
+K SYLK D R Y + D++ L+FGC +SK+KF LW+
Sbjct: 101 VKL---------RSYLKVRDMDYDI--VPTRMAAEYTI-DNITLHFGCQVSKEKFYALWN 148
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
+ENVSVK RK FL+Y S YKLELSYE+IWQIELHRPRG K+L++Q+ G
Sbjct: 149 KENVSVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQAKKFLIVQMLGAAK 208
Query: 180 IY--ENEIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYKESPVQFTLVPG 237
I + + VR+VDF+PS I QSS +CLELP +P ++F YKE +F L G
Sbjct: 209 ILKKDTDDQWVRDVDFSPSYCIGQSSALCLELPRSGQLPNFQENFPCYKEDEGRFFLEVG 268
Query: 238 SVFSCNSDLV 247
S F SDLV
Sbjct: 269 STFCRVSDLV 278
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 155/272 (56%), Gaps = 26/272 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSR-AHAIVEFTTVKAAEL 59
M K I ++GF +SA AVK FLE HTG GTV +EV Q+KG R A A V+F K+AE+
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS L YG SYLKA + + Y + + Q D + LNFGC IS KF+VL S
Sbjct: 61 IIDLASKGLYYGPSYLKAWEMKT----YIVQPRTYVQHMDGVTLNFGCQISDKKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
+ VS+K ++K FFLSY S DYKL+LSYE+IWQ+ LHRP G A++L++QL G P
Sbjct: 117 KV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPR 175
Query: 180 IYEN-------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY+ + VR DF P S I SS +CLE + +P + FFYYK
Sbjct: 176 IYKRLEDSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGVRLPNFSESFFYYK 234
Query: 227 ESPVQFTLVPGSVFSCNS------DLVHMTHG 252
ES Q L G FS + +VH+ G
Sbjct: 235 ESANQVILQTGFTFSFSQKKLALVPIVHLPEG 266
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/254 (46%), Positives = 149/254 (58%), Gaps = 20/254 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF +SA VK FLE HTG GTV +EV Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + + H D + LNFGC IS DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQL-RAYVDHM---DGITLNFGCQISDDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS+K ++KF FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P
Sbjct: 117 TE-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DFAP S I SS +CL+ H+P + FF+Y
Sbjct: 176 IYKRLENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYT 234
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 235 ERENNITLQTGFTF 248
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 150/254 (59%), Gaps = 20/254 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I ++GF + +SA VK FLE HTG GT+ +EV Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + + H D + LNFGC IS+DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQL-RAYVDHM---DGITLNFGCQISEDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS+K ++KF FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P
Sbjct: 117 TE-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DF P S I SS +CL+ H+P + FF+Y
Sbjct: 176 IYKRLENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYA 234
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 235 ERENNITLQTGFTF 248
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 146/254 (57%), Gaps = 20/254 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF +SA VK FLE HTG GTV +EV Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + H D + LNFGC IS DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWELETDIVQLWAY-VDHM---DGITLNFGCQISDDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS+K ++ F FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P
Sbjct: 117 TE-VSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DF P S I SS +CL+ H+P + FF+Y
Sbjct: 176 IYKRLENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYA 234
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 235 ERENNITLQTGFTF 248
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 147/254 (57%), Gaps = 21/254 (8%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF + A VK FLE HTG GTV ++V Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + A + H D + LNFGC IS DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQVAY--VDHM---DGITLNFGCQISDDKFAVLGS 115
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS+K ++K FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P
Sbjct: 116 TE-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 174
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DFAP S I SS +CL+ H+P + FF+Y
Sbjct: 175 IYKRLENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYA 233
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 234 ERENNITLQTGFTF 247
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 147/253 (58%), Gaps = 31/253 (12%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSR-AHAIVEFTTVKAAEL 59
M K I ++GF +SA AVK FLE HTG GTV +EV Q+KG R A A V+F K+AEL
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEL 60
Query: 60 IKCLASVRLSYGNSYLKASD-----AQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKF 114
I LAS L YG SYL+A + Q RT + Q D + LNFGC IS KF
Sbjct: 61 IMDLASEGLYYGPSYLQAWEMKTDIVQPRT---------YVQHMDGVTLNFGCQISDKKF 111
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
+VL S++ VS+K ++K FFLSY S DYKL+LSYE+IWQ+ LH P G A++L++QL
Sbjct: 112 AVLGSKD-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCPYGQKAQFLLLQL 170
Query: 175 YGVPMIYEN-------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKD 221
+G P I++ + VR DF P S I SS +CLE + +P
Sbjct: 171 FGAPRIHKRLEDSCNSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLEFHNGVRLPNFSGS 229
Query: 222 FFYYKES-PVQFT 233
FFYYKES P FT
Sbjct: 230 FFYYKESGPSYFT 242
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 145/262 (55%), Gaps = 19/262 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS-RAHAIVEFTTVKAAEL 59
M+K I ++GF S+VSA VK+FLE HTG TV VEV Q+KG H V+FT K+ E
Sbjct: 1 MSKTIQMHGFQSNVSAEEVKKFLEKHTGHQTVHAVEVWQHKGDPTTHVDVQFTDRKSVET 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAK-RGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
I L + LSY + L A++ + K R PH DD+ ++FGC SKDK SVLW
Sbjct: 61 ILLLVTQHLSYSDYVLNATEINHDI--FPKPRNFPHRM--DDIVVHFGCQTSKDKLSVLW 116
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
NVSVK S +RK F +Y ++DYKL++S ESI +IEL K+L+ QL G P
Sbjct: 117 EHPNVSVKFGSRLRKMYIFFNYLTMDYKLQISSESISRIELRHSDDLTKKFLLFQLRGAP 176
Query: 179 MIYENEI------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
MIYE ++ H R VDF PSSSI QSS +C ELP +PK + + Y
Sbjct: 177 MIYEKDVSKSKYFKEACDNHWFRGVDFTPSSSIGQSSTLCFELPQSIEVPKFNQHYRNYS 236
Query: 227 E-SPVQFTLVPGSVFSCNSDLV 247
E FTL FS N V
Sbjct: 237 EVDDSIFTLEKHLGFSSNFKFV 258
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 147/254 (57%), Gaps = 20/254 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I ++GF +SA VK FLE +TG GTV +EV Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LA+ RL +G+SYLKA + +T R + D + LNFGC IS DKF+VL S
Sbjct: 61 IITLANNRLYFGSSYLKA--WEMKTDIVQLRA--YVDQMDGITLNFGCQISDDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS++ ++KF FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P
Sbjct: 117 TE-VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPR 175
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DF P S I SS +CL+ +P + FF+Y
Sbjct: 176 IYKRLENSCYSFFKETPDDQWVRTTDFPP-SWIGLSSSLCLQFRRGVRLPNFEESFFHYA 234
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 235 ERENNITLQTGFTF 248
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 148/269 (55%), Gaps = 25/269 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R +AIV+FT+ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI A+ RL YG SYLKA + ++ + + H G LK+ FGC +S KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASL-HTISG--LKMFFGCQVSTKKFLTLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
S ++V V +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ+ G P
Sbjct: 118 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 179 MIYENEIHR-------------------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
I+E E +R DF SS I QS+ CLELP ++P
Sbjct: 178 KIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 237
Query: 220 KDFFYYKE-SPVQFTLVPGSVFSCNSDLV 247
++F Y E F + GS +S N++ +
Sbjct: 238 ENFANYAEHRASSFLIESGSSYSSNANTL 266
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 148/269 (55%), Gaps = 25/269 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R +AIV+FT+ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI A+ RL YG SYLKA + ++ + + H G LK+ FGC +S KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASL-HTISG--LKMFFGCQVSTKKFLTLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
S ++V V +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ+ G P
Sbjct: 118 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 179 MIYENEIHR-------------------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
I+E E +R DF SS I QS+ CLELP ++P
Sbjct: 178 KIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 237
Query: 220 KDFFYYKE-SPVQFTLVPGSVFSCNSDLV 247
++F Y E F + GS +S N++ +
Sbjct: 238 ENFANYAEHRASSFLIESGSSYSSNANTL 266
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 146/258 (56%), Gaps = 26/258 (10%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M K I + GF SHV+A AVK FLEGHTG GTV ++V K G R +AIV+FT+ AE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI LA+ RL YG+SYLKA + K Y L ++L L FGC +S +KF VLW
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDI--VPKPRTYMYTL-EELLLCFGCQVSTEKFRVLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
V +RK F L Y+SV+Y+LELSYE IWQI+LH PR KYL+IQL G P
Sbjct: 118 EGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAP 177
Query: 179 MIYE---------------------NEIHRVREVDFAPSSSIEQSSDICLELPSRAHIPK 217
IY+ ++ VR DF S SI QSS +CL+LP+ +P
Sbjct: 178 RIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPP 237
Query: 218 ALKDFFYYKESPVQFTLV 235
++F YY+E +F L+
Sbjct: 238 FKQNFAYYEEFEHEFRLI 255
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 146/271 (53%), Gaps = 32/271 (11%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVK-AA 57
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R AIV+FT + A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 58 ELIKCLASVRLSYGNSYLKASDA-QRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
++I A RL YG SYL A + Q P R H G LK+ FGC +S KF
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVDQDIVPK--PRASLHNISG--LKMYFGCQVSTQKFLT 116
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LWS ++V V +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ+ G
Sbjct: 117 LWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIG 176
Query: 177 VPMIYENEIHR-------------------VREVDFAPSSSIEQSSDICLELPSRAHIPK 217
P I+E E +R DF SS I QS+ CLELP ++P
Sbjct: 177 APKIFEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 236
Query: 218 ALKDFFYYKE---SPVQFTLVPGSVFSCNSD 245
++F Y E SP F + GS +S N++
Sbjct: 237 FRENFANYAEHRASP--FLIESGSSYSSNAN 265
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 144/268 (53%), Gaps = 26/268 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTT-VKAA 57
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R AIV+FT + A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYAR 60
Query: 58 ELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVL 117
++I A RL YG SYL A + ++ + + H G LK+ FGC +S L
Sbjct: 61 QIITGAAERRLYYGRSYLNAFEVEQDIVPKPRASL-HNISG--LKMYFGCQVSTQTLLTL 117
Query: 118 WSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGV 177
WS ++VSV +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ+ G
Sbjct: 118 WSAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 177
Query: 178 PMIYENEIHR-------------------VREVDFAPSSSIEQSSDICLELPSRAHIPKA 218
P I+E E +R DF SS I QS+ CLELP ++P
Sbjct: 178 PKIFEKEDQPINLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDF 237
Query: 219 LKDFFYYKESPVQFTLV-PGSVFSCNSD 245
++F Y E L+ GS +S N++
Sbjct: 238 RENFANYAEHRASTYLIESGSSYSSNAN 265
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 146/260 (56%), Gaps = 20/260 (7%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVK-AA 57
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R AIV+FT + A
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYAR 60
Query: 58 ELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVL 117
++I A L YG SYL A + ++ + + H G LK+ FGC +S KF L
Sbjct: 61 QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASL-HNISG--LKMYFGCQVSTQKFLTL 117
Query: 118 WSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQ---- 173
WS ++V V +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ
Sbjct: 118 WSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQKKKP 177
Query: 174 ---LYGVPMIYEN--EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYKE- 227
L+G+ Y + + +R DF SS I QS+ CLELP ++P ++F Y E
Sbjct: 178 INLLFGMMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRENFANYAEH 237
Query: 228 --SPVQFTLVPGSVFSCNSD 245
SP F + GS +S N++
Sbjct: 238 RASP--FLIESGSSYSSNAN 255
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 147/275 (53%), Gaps = 31/275 (11%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKA 56
+ + I ++GFA SA +VKEFLE +G GT+ +++ + SRA AIV+F + ++
Sbjct: 2 VGRTIQVHGFALTDSAESVKEFLERISGAGTIYALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 AELIKCLASVRLS-YGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFS 115
A L++ + G YLK A R + IP + L D + L+ GC + ++ S
Sbjct: 62 ASLVEDVVQRNAPRIGRFYLKTRPADRDI--VPRPRIPMFSLEDTV-LHLGCLVKENILS 118
Query: 116 VLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPA--KYLVIQ 173
L++ NVSV+ D++K F+LSY + YKLELSYESIW+I+LHRP + + K+L+IQ
Sbjct: 119 ALFTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLLIQ 178
Query: 174 LYGVPMIYENEIHR---------------------VREVDFAPSSSIEQSSDICLELPSR 212
+ P IYE R R +DF PS SI QSS CLE+P +
Sbjct: 179 VQAAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVPQQ 238
Query: 213 AHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
+P+ F YYKE + F G +SC + LV
Sbjct: 239 CELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLV 273
>gi|113205191|gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
Length = 190
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 6/176 (3%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I ++GF + +SA VK FLE HTG GT+ +EV Q+KG SRA A V+F +A+
Sbjct: 1 MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + + H D + LNFGC IS+DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVQ-LRAYVDHM---DGITLNFGCQISEDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLY 175
E VS+K ++KF FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQ++
Sbjct: 117 TE-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQVF 171
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 138/272 (50%), Gaps = 29/272 (10%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GF S V+A VK+ LE G G V V++ K SR+ AIV+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 58 ELIKCLASVR-LSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+ A L G+ YLKA A+R + I + Q KL+FGC + + SV
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQ---GAKLHFGCLLKERVLSV 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LWS NVSV+ +++ +F L Y S YKLELSYESIW+I+LHRP G K+L+IQ+
Sbjct: 120 LWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179
Query: 177 VPMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHI 215
P IYE I R DF PS+SI QS +CLELP ++
Sbjct: 180 APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHICYL 239
Query: 216 PKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
P + F YY+ F L PG +S N+ V
Sbjct: 240 PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFV 271
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 139/289 (48%), Gaps = 46/289 (15%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAH---AIVEFTTVKAA 57
M K I +YGF V+ VKEFLE HTG+GTVS V + + K + V F + AA
Sbjct: 1 MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60
Query: 58 ELIKCLASV---RLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKF 114
E I A+ +L + +SYLKA + +++ A G P + +D+K G ISKDK
Sbjct: 61 EYIVAKATTEEKKLWFESSYLKAREVEKK----ATSGGPEMERMEDVKGQLGSMISKDKM 116
Query: 115 SVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
V+W E +V+ + +RK F+LSYE DYK+EL +E+I +E P P+K+ +IQ+
Sbjct: 117 RVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQV 176
Query: 175 YG---------------------VPMIYE---------------NEIHRVREVDFAPSSS 198
P I+ N +R+VDF PSS
Sbjct: 177 SSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSC 236
Query: 199 IEQSSDICLELPSRAHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
I QS +CL+ H+P + YK + F L GS F NS+LV
Sbjct: 237 IGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLV 285
>gi|113205255|gb|ABI34312.1| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 241
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 116/181 (64%), Gaps = 9/181 (4%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF + A VK FLE HTG GTV ++V Q+KG SRA A V+F +A+
Sbjct: 66 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 125
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + A + H D + LNFGC IS DKF+VL S
Sbjct: 126 IINLASKRLYFGSSYLKAWEMKTDIVQVAY--VDHM---DGITLNFGCQISDDKFAVLGS 180
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E VS+K ++K FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQ++ P+
Sbjct: 181 TE-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQVF--PI 237
Query: 180 I 180
I
Sbjct: 238 I 238
>gi|113205404|gb|ABI34379.1| RNA-directed RNA polymerase-like, putative [Solanum tuberosum]
Length = 274
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 113/176 (64%), Gaps = 7/176 (3%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF + A VK FLE HTG GTV ++V Q+KG SRA A V+F +A+
Sbjct: 86 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 145
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + A + H D + LNFGC IS DKF+VL S
Sbjct: 146 IINLASKRLYFGSSYLKAWEMKTDIVQVAY--VDHM---DGITLNFGCQISDDKFAVLGS 200
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLY 175
E VS+K ++K FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQ++
Sbjct: 201 TE-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQVF 255
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 133/261 (50%), Gaps = 51/261 (19%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAE 58
M K I +YG S+VSA +KEFLE +TGEGT+ +E+ Q K S HA V+FT+++ AE
Sbjct: 1 MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI LA +L YG +YLKA + R H D + L+FG +S ++F
Sbjct: 61 LIISLAK-QLWYGGNYLKAREMDLDIIP-KPRTFLHSM--DRITLHFGYQMSNERFC--- 113
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
LS E+IWQI+L PRG K+L+IQL P
Sbjct: 114 ------------------------------LSCENIWQIQLREPRGQNTKFLLIQLLDAP 143
Query: 179 MIYENEI------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IYE ++ VRE+DF PS SI QSS +CLELP + +P ++F YK
Sbjct: 144 QIYEKDVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYK 203
Query: 227 ESPVQFTLVPGSVFSCNSDLV 247
E+ +F L G+ FS N LV
Sbjct: 204 ENDRKFILESGASFSGNLHLV 224
>gi|113205315|gb|ABI34338.1| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 215
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 112/176 (63%), Gaps = 7/176 (3%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59
M K I +YGF + A VK FLE HTG GTV ++V Q+KG SRA A V+F +A+
Sbjct: 27 MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 86
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + A + H D + LNFGC IS DKF+VL S
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKTDIVQVAY--VDHM---DGITLNFGCQISDDKFAVLGS 141
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLY 175
E VS+K ++K FFLS S DYKL+LSYE+IWQ+ LHRP G A+ L+IQ++
Sbjct: 142 TE-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQSLLIQVF 196
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 137/272 (50%), Gaps = 29/272 (10%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GF S V+A VK+ LE G G V V++ K SR+ AIV+F + A
Sbjct: 3 GKTLQVSGFPSTVNADHVKDLLEQIVGTGNVFAVKLRPPKNISANSRSFAIVQFQSEAHA 62
Query: 58 ELIKCLASVR-LSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+ A L G+ YLKA A+R + I + Q KL+FGC + + SV
Sbjct: 63 SLVLNAAQRNALRSGSHYLKARYAERDIVPRPRTTIFNLQ---GAKLHFGCLLKERVLSV 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LWS +VSV+ +++ +F L Y S YKLELSYESIW+I+LHRP G K+L+IQ+
Sbjct: 120 LWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQVQA 179
Query: 177 VPMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHI 215
P IYE I R DF PS+SI QS + LELP ++
Sbjct: 180 APKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHICYL 239
Query: 216 PKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
P + F YY+ F L PG +S N+ V
Sbjct: 240 PNIREYFVYYEVHNDIFNLQPGYSYSSNTCFV 271
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 128/262 (48%), Gaps = 54/262 (20%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M+K I +YGF S VSA +KEFLE +TGEGT+ +E+ Q + S HA V+FT+ + AE
Sbjct: 1 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
I L ++ YG +YLKA + R H D + L+FGC +S ++F VLW
Sbjct: 61 FIITLCKKKVWYGRNYLKAREMDLDIIP-KPRAFLHSM--DRITLHFGCQMSDERFCVLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
NVS PRG K+L+IQL G P
Sbjct: 118 KAINVS------------------------------------HPRGQITKFLLIQLLGAP 141
Query: 179 MIYENEI-------------HRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYY 225
IYE ++ VRE+DF PS I QS +CLELP + +P ++F YY
Sbjct: 142 QIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYY 201
Query: 226 KESPVQFTLVPGSVFSCNSDLV 247
KE+ +F L GS +S N LV
Sbjct: 202 KENDGKFILESGSSYSHNLHLV 223
>gi|167405748|gb|ABZ79701.1| RNA-dependent RNA polymerase [Solanum lycopersicum]
Length = 163
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/168 (49%), Positives = 109/168 (64%), Gaps = 6/168 (3%)
Query: 14 VSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGN 72
+SA V FLE +TG GT +EV Q+KG SRA A V+F +A+ I LA+ RL +G+
Sbjct: 1 LSAEVVLSFLEKYTGYGTSCALEVKQSKGGSRAFAKVQFADNISADKIITLANNRLYFGS 60
Query: 73 SYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKLCSDIR 132
SYLKA + +T R + D + LNFGC IS DKF+VL S E VS++ ++
Sbjct: 61 SYLKA--WEMKTDIVQLR--AYVDQMDGITLNFGCQISDDKFAVLGSTE-VSIQFGIGLK 115
Query: 133 KFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMI 180
KF FFLS S DYKL+LSYE+IWQ+ LHRP G A++L+IQL+G P I
Sbjct: 116 KFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 163
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 131/254 (51%), Gaps = 31/254 (12%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GFA SA VK+ LE G G V V++ K SRA+AIV+F T + A
Sbjct: 3 VKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHA 62
Query: 58 ELIKCLASVR-LSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+K A + L G+ YLK + R + + ++L +D+ L+FGC + + S
Sbjct: 63 SLVKNAAQRKILRRGHYYLKVHPSDRDI--VPRPRVSMFKL-EDVTLHFGCLLKETILSA 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSY--ESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
LWS+ VSV+ +++K F+L S++YKLELSYESIW+I+L RP K+L+IQ+
Sbjct: 120 LWSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLLIQV 179
Query: 175 YGVPMIYENEIHR---------------------VREVDFAPSSSIEQSSDICLELPSRA 213
P IYE R R DF SSSI QS +CLE+P R
Sbjct: 180 QAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRC 239
Query: 214 HIPKALKDFFYYKE 227
+P FFYY E
Sbjct: 240 DLPNIRDYFFYYHE 253
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 135/272 (49%), Gaps = 29/272 (10%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GF + V+ VK+ LE G G V V++ K SR+ AIV+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 ELIKCLA-SVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+ A L G++YLK A+R + + + L +D L+FGC + + SV
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTAL--FNL-EDATLHFGCLLRERVLSV 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LWS VSV+ ++K +F L+Y YKLELSYESIW+I+L+ P G K+L+IQ+
Sbjct: 120 LWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMA 179
Query: 177 VPMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHI 215
P IYE + R DF P +SI QS +CLELP+ ++
Sbjct: 180 APKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYL 239
Query: 216 PKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
P + F YYK F + G +S NS V
Sbjct: 240 PNIREYFVYYKNHNHDFHCMRGHSYSSNSCFV 271
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 135/272 (49%), Gaps = 29/272 (10%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GF + V+ VK+ LE G G V V++ K SR+ AIV+F T A
Sbjct: 3 GKTLQVSGFPATVNVHHVKDLLEQIVGLGKVCAVKLRPPKNISANSRSFAIVQFETEAHA 62
Query: 58 ELIKCLA-SVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+ A L G++YLK A+R + + + L +D L+FGC + + SV
Sbjct: 63 SLVVNAARGNALRSGSNYLKVRPAERDIILKPRTAL--FNL-EDATLHFGCLLRERVLSV 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
LWS VSV+ ++K +F L+Y YKLELSYESIW+I+L+ P G K+L+IQ+
Sbjct: 120 LWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQVMA 179
Query: 177 VPMIYENEI---------------------HRVREVDFAPSSSIEQSSDICLELPSRAHI 215
P IYE + R DF P +SI QS +CLELP+ ++
Sbjct: 180 APKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPADCYL 239
Query: 216 PKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
P + F YYK F + G +S NS V
Sbjct: 240 PNIREYFAYYKNHNHDFHCMRGHSYSSNSCFV 271
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 138/275 (50%), Gaps = 31/275 (11%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKA 56
+ + I + GFA SA VK FLE G GT+ +++ + SRA AI +F + ++
Sbjct: 2 VGRTIQVQGFALTDSAEPVKLFLERIAGAGTICALKLRHPRNISANSRAFAIAQFQSQES 61
Query: 57 AELIK-CLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFS 115
A L++ + L G YL+ A R + IP + L +D+ L+ GC + ++ S
Sbjct: 62 ASLVENATQRLVLKIGRFYLRTRPADRDI--VPRPRIPMFSL-EDIVLHLGCLVKENILS 118
Query: 116 VLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAK--YLVIQ 173
L+ NVSV+ D++K F+LSY +KLELSYESIW+++LHRP + ++ +L+IQ
Sbjct: 119 ALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQ 178
Query: 174 LYGVPMIY---------------------ENEIHRVREVDFAPSSSIEQSSDICLELPSR 212
+ P IY E + R +DF PS+SI QSS +
Sbjct: 179 VQAAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQQQ 238
Query: 213 AHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
+P+ F YYKE + F G +SC S LV
Sbjct: 239 CELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLV 273
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 132/254 (51%), Gaps = 31/254 (12%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKAA 57
K + + GFA SA VK+ LE G G V V++ K SRA+AIV+F T + A
Sbjct: 3 VKTLQVSGFALDDSADYVKDLLERIVGCGNVYAVKLRHPKNVTATSRAYAIVQFQTEEHA 62
Query: 58 ELIKCLASVR-LSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSV 116
L+K A + L G+ YLK + R + + ++L +D+ L+FGC + + S
Sbjct: 63 SLVKNAAQRKILRRGHYYLKVHPSDRDI--VPRPRVSMFKL-EDVTLHFGCLLKETILSA 119
Query: 117 LWSQENVSVKLCSDIRKFEFFLSY--ESVDYKLELSYESIWQIELHRPRGHPAKYLVIQL 174
LWS++ VSV+ +++K F+L S++YKLELS+ESIW+I+L RP K+L+IQ+
Sbjct: 120 LWSRKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRPPKSQTKFLLIQV 179
Query: 175 YGVPMIYENEIHR---------------------VREVDFAPSSSIEQSSDICLELPSRA 213
P IYE R R DF SSSI QS +CLE+P R
Sbjct: 180 QAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVPRRC 239
Query: 214 HIPKALKDFFYYKE 227
+P FFYY E
Sbjct: 240 DLPNIRDYFFYYHE 253
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 124/254 (48%), Gaps = 54/254 (21%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK-GSRAHAIVEFTTVKAAEL 59
M K I +YGF +SA VK FLE HTG GTV +EV Q+K GSRA A V+F +A+
Sbjct: 1 MGKTIQVYGFPYLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + H + + H D + LNFGC IS DKF+VL S
Sbjct: 61 IINLASKRLYFGSSYLKAWEMKTDIVHL-RAYVDHM---DGITLNFGCQISDDKFAVLGS 116
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E V LHRP G A++L+IQL+G P
Sbjct: 117 TEVV-----------------------------------LHRPYGQNAQFLLIQLFGAPR 141
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DFAP S I SS +CL+ H+P + FF+Y
Sbjct: 142 IYKRLENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQEIFFHYT 200
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 201 ERENNITLQTGFTF 214
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 123/254 (48%), Gaps = 54/254 (21%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK-GSRAHAIVEFTTVKAAEL 59
M K I +YGF +SA VK FLE HTG GTV +EV Q+K GSRA A V+F +A+
Sbjct: 27 MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKRGSRAFAKVQFVDNISADK 86
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + + H D + LNFGC IS DKF+VL S
Sbjct: 87 IINLASKRLYFGSSYLKAWEMKADIVQL-RAYVDHM---DGITLNFGCQISDDKFAVLGS 142
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E V LHRP G A++L+IQL+G P
Sbjct: 143 TEVV-----------------------------------LHRPYGQNAQFLLIQLFGAPR 167
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DFAP S I SS +CL+ H+P + FF+Y
Sbjct: 168 IYKRLENSCYSFFKETPDDQWVRTTDFAP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYT 226
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 227 ERENNITLQTGFTF 240
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 121/254 (47%), Gaps = 54/254 (21%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK-GSRAHAIVEFTTVKAAEL 59
M K I +YGF +SA VK FLE HTG GTV +EV Q+K GSRA A V+F +A+
Sbjct: 71 MGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 130
Query: 60 IKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWS 119
I LAS RL +G+SYLKA + + + H D + LNFGC IS DKF+VL S
Sbjct: 131 IINLASKRLYFGSSYLKAWELETDIVQLWAY-VDHM---DGITLNFGCQISDDKFAVLGS 186
Query: 120 QENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPM 179
E V LHRP G A++L+IQL+G P
Sbjct: 187 TEVV-----------------------------------LHRPYGQNAQFLLIQLFGAPR 211
Query: 180 IY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYK 226
IY EN + VR DF P S I SS +CL+ H+P + FF+Y
Sbjct: 212 IYKRLENSCYSFFKETPDDQWVRTTDFTP-SWIGLSSSLCLQFRRGVHLPNFQESFFHYA 270
Query: 227 ESPVQFTLVPGSVF 240
E TL G F
Sbjct: 271 ERENNITLQTGFTF 284
>gi|413938755|gb|AFW73306.1| hypothetical protein ZEAMMB73_707398 [Zea mays]
Length = 208
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 13/190 (6%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG----SRAHAIVEFTTVKA 56
+ + I + GFA SA +VK FLE G GT+ +++ + SRA AIV+F + ++
Sbjct: 2 VGRTIQVQGFALTDSAESVKLFLERIAGAGTICALKLRHPRNISANSRAFAIVQFQSQES 61
Query: 57 AELIKCLASVR-LSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFS 115
A L++ A + L G YL+ A R + IP + L +D+ L+ GC + ++ S
Sbjct: 62 ASLVENAAQRQVLKIGRFYLRTRPADRDI--VPRPRIPMFSL-EDIVLHLGCLVKENILS 118
Query: 116 VLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAK--YLVIQ 173
L+ NVSV+ D++K F+LSY +KLELSYESIW+++LHRP + ++ +L+IQ
Sbjct: 119 ALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLIQ 178
Query: 174 L---YGVPMI 180
+ Y +P +
Sbjct: 179 VGFSYNLPFL 188
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 110/283 (38%), Gaps = 61/283 (21%)
Query: 16 ARAVKEFLEGHTGEGTVSDVEVGQ---NKGSRAHAIVEFTTVKAAELIKCLASVRLSYGN 72
A + E LE G GTV + N SR +A V+F T +A++L LA+ N
Sbjct: 14 ASELVECLESVCGRGTVVSCSIDTAHANWMSRGYAFVQFATAEASQLASQLAA-----EN 68
Query: 73 SYLKASDAQRRTPHYAKRGIPHYQL-GDD----LKLNFGCHISKDKFSVLWSQENVSVKL 127
+ L A R H +G+ H + GD+ + L G + LWS V+ +
Sbjct: 69 ALLFYGRALRIQAH---KGVTHGPIRGDERVEGIVLTMGFARGESGIDCLWSCSGVAAEF 125
Query: 128 CSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIYEN---- 183
C + L ++ VDYKLEL + ++ ++ A +L++QL+ P++++
Sbjct: 126 CFGSCQLNLLLQHDGVDYKLELLFRNLRFVDAFVETSQ-ASHLLLQLFRPPLVFQGLPSP 184
Query: 184 -----------------------------------EIHRVREVDFAPSSSIEQSSDICLE 208
E R DF P +I QS CLE
Sbjct: 185 SEQGNPVLDTPLAILRHFKAVRANSYNYKYSKFAKEPTWTRSTDFTPGKAISQSLVYCLE 244
Query: 209 LPSRAHIPKAL---KDFFYYKESPVQ--FTLVPGSVFSCNSDL 246
PS +AL K Y S + TLV G ++ +L
Sbjct: 245 FPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQEL 287
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 31/230 (13%)
Query: 43 SRAHAIVEFTTVKAAELIKCLAS--VRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDD 100
SR +A V+F T +A++L LA+ L YG + A++ H RG +
Sbjct: 2 SRGYAFVQFATAEASQLASQLAAENALLFYGRAL--RIQARKAVTHGPIRGDERVE---G 56
Query: 101 LKLNFGCHISKDKFSVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELH 160
+ L G + LWS V+ + C + L ++ VDYKLEL + ++ ++
Sbjct: 57 IVLTMGFARGESGIDCLWSCSGVAAEFCFGSCQLNLLLQHDGVDYKLELLFRNLRFVDAF 116
Query: 161 RPRGHPAKYLVIQLYGVPMI-------------------YENEIHRVREVDFAPSSSIEQ 201
+ L+ + P+ + E R DF P +I Q
Sbjct: 117 VETSQASHLLLQVMLDTPLAILRHFKAVRSNSYNYKYSKFAKEPTWTRSTDFTPGKAISQ 176
Query: 202 SSDICLELPSRAHIPKAL---KDFFYYKESPVQ--FTLVPGSVFSCNSDL 246
S CLE PS +AL K Y S + TLV G ++ +L
Sbjct: 177 SLVYCLEFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQEL 226
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 37/264 (14%)
Query: 16 ARAVKEFLEGHTGEGTVSDVEV---GQNKGSRAHAIVEFTTVKA-AELIKCLASVRLSYG 71
A+ + FL G +V +E+ +N SR V+FTT++A A+ + L +G
Sbjct: 20 AQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMSLSVQNSLVFG 79
Query: 72 NSYLKAS----DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKL 127
L+ S D R H R ++ L+ G + +++ SVL S E V +
Sbjct: 80 TQNLRFSLINDDIVVRPVHATNRT-------ENGVLHVGFMLKEERMSVLESWEGVKAWI 132
Query: 128 CSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIYE----- 182
+ R+ EF++ +E YKLE+ +E I + H L+++L P IY+
Sbjct: 133 MPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISGS 192
Query: 183 NEIHR-----------------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYY 225
N R VR +F+P S+ QS+ C E+ F +Y
Sbjct: 193 NMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFY 252
Query: 226 KESPVQFTLVPGSVFSCNSDLVHM 249
KE+ L G F S++V +
Sbjct: 253 KETQKDIVLEDGEEFCSTSEIVPL 276
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 110/264 (41%), Gaps = 37/264 (14%)
Query: 16 ARAVKEFLEGHTGEGTVSDVEV---GQNKGSRAHAIVEFTTVKA-AELIKCLASVRLSYG 71
A+ + FL G +V +E+ +N SR V+FTT++A A+ + L +G
Sbjct: 20 AQDLLNFLNSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLEAKAKAMSLSVQNSLVFG 79
Query: 72 NSYLKAS----DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKL 127
L+ S D R H R ++ L+ G + +++ SVL S E V +
Sbjct: 80 TQNLRFSLINDDIVVRPVHATNRT-------ENGVLHVGFMLKEERMSVLESWEGVKAWI 132
Query: 128 CSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIYE----- 182
+ R+ EF++ +E YKLE+ +E I + H L+++L P IY+
Sbjct: 133 MPERRRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKKISGS 192
Query: 183 NEIHR-----------------VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYY 225
N R VR +F+P S+ QS+ C E+ F +Y
Sbjct: 193 NMASRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFY 252
Query: 226 KESPVQFTLVPGSVFSCNSDLVHM 249
KE+ L G F S++V +
Sbjct: 253 KETQKDIVLEDGEEFCSTSEIVPL 276
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 188 VREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLV 247
R +DF PS+SI QSS +CLE+P + +P+ F YYKE + F G +SC S+LV
Sbjct: 39 TRTIDFTPSASIGQSSILCLEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLV 98
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 33/268 (12%)
Query: 14 VSARAVKEFLEGHTGEGTVSDVEVGQNKGS---RAHAIVEFTTVKAAELIKCLAS-VRLS 69
+ A + FLE H GE TV +E+ + + R A V+FTT++ + L+S +L
Sbjct: 21 IVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLL 80
Query: 70 YGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDK-FSVLWSQENVSVKLC 128
+ L+ S+A R + + DD+ L G S +K F L + V +
Sbjct: 81 FKTHNLRLSEAY---DDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWDGVRCWIL 137
Query: 129 SDIRKFEFFLSYESVD-YKLELSYESIWQIELHRPRGHPAK---YLVIQLYGVPMIYENE 184
++ R+ EF++ +ES D YK+E+ +E I + G ++ +L+ YG +
Sbjct: 138 TEKRRVEFWV-WESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVT 196
Query: 185 IH--------------------RVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFY 224
+H +R DF+ S SI S+ CLE+ + + + Y
Sbjct: 197 VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPY 256
Query: 225 YKESPVQFTLVPGSVFSCNSDLVHMTHG 252
Y+E + T V G F+ + +V + +
Sbjct: 257 YREDTLSLTYVDGKTFASAAQIVPLLNA 284
>gi|147768380|emb|CAN71521.1| hypothetical protein VITISV_037359 [Vitis vinifera]
Length = 374
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 265 ASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
S+N VNK + CFFCKNKGH+KK+ PK+K W+ KE
Sbjct: 32 TSLNHVNKGDIKCFFCKNKGHIKKSYPKFKVWLEKE 67
>gi|356570187|ref|XP_003553272.1| PREDICTED: uncharacterized protein LOC100806272 [Glycine max]
Length = 105
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 34/54 (62%)
Query: 247 VHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
V + GKKK+ + K K K S V K CFFCK KGHMKK C K+KTW+ K+
Sbjct: 41 VRVAGGKKKEDQAKNKGKISAQLVIKKESKCFFCKKKGHMKKDCSKFKTWLDKK 94
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 113/269 (42%), Gaps = 34/269 (12%)
Query: 14 VSARAVKEFLEGHTGEGTVSDVEVGQNKGS---RAHAIVEFTTVKAAELIKCLAS-VRLS 69
+ A + FLE + GE TV +E+ + + R A V+FTT++ + L+S +L
Sbjct: 21 IVADELLRFLELNLGEDTVFALEILTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLL 80
Query: 70 YGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDK-FSVLWSQENVSVKLC 128
+ L+ S+A R + + DD+ L G S +K F L + V +
Sbjct: 81 FKTHNLRLSEAY---DDIIPRPVDPRRRLDDIVLTVGFPESDEKRFCALEKWDGVRCWIL 137
Query: 129 SDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAK---YLVIQLYGVPMIYEN-- 183
+ R+ EF++ YK+E+ +E I + G ++ +L+ YG P +++
Sbjct: 138 EEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASETNAFLLKLKYG-PKVFKRVS 196
Query: 184 --------------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFF 223
+ +R DF+ SI S+ CLE+ + + +
Sbjct: 197 GPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTCFCLEVHNGSTMLDVFSGLP 256
Query: 224 YYKESPVQFTLVPGSVFSCNSDLVHMTHG 252
YY+E + T V G F+ S +V + +
Sbjct: 257 YYREETLSLTFVDGKNFASVSQIVPLLNA 285
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 111/283 (39%), Gaps = 45/283 (15%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEV---GQNKGSRAHAIVEFTTVKAA 57
++ + + +A+ + +FLE G TV +E+ N SR V+F T+ A
Sbjct: 9 LSNTVRVSNIPQSATAKDLLDFLESTVGPSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 68
Query: 58 ELIKCLASVR-LSYGNSYLKASDAQR----RTPHYAKRGIPHYQLGDDLKLNFGCHISKD 112
L+ + L + +L+ S+ R H G+ L G +S
Sbjct: 69 SRALSLSQLNHLLFHRHFLRLSETDADIIFRPQHRLHNGV----------LYAGFVLSDH 118
Query: 113 KFSVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHR-PRGHPAKY-- 169
+ SVL S E V+ + ++ +F++ + Y+LE +E I +E H G AK
Sbjct: 119 RMSVLESWEGVAGWVLPLRKRLDFWVWHNGDCYRLEFLFEDI--LESHGYCLGEDAKLNA 176
Query: 170 LVIQLYGVPMIYEN----------------------EIHRVREVDFAPSSSIEQSSDICL 207
L++++ P IY+ E VR DF+P SI S+ C
Sbjct: 177 LLLKMKFGPRIYKKKTGADVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCW 236
Query: 208 ELPSRAHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLVHMT 250
E+ K F YKE+ L G F +++ V +
Sbjct: 237 EIVEEHLALDVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLV 279
>gi|356519190|ref|XP_003528256.1| PREDICTED: uncharacterized protein LOC100788513 [Glycine max]
Length = 586
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 12/65 (18%)
Query: 244 SDLVHMTHGKKKDKKRKRKRK--------ASINKVNKDAVNCFFCKNKGHMKKACPKYKT 295
S L+ T+GK K K + +K A I KV K CFFCK KGHMKK CP ++
Sbjct: 491 SALLTTTYGKNKAIKSQAYQKGNGKIPPQADIKKVAK----CFFCKKKGHMKKNCPGFQK 546
Query: 296 WVVKE 300
W+ K+
Sbjct: 547 WLEKK 551
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 34/263 (12%)
Query: 16 ARAVKEFLEGHTGEGTVSDVEVG---QNKGSRAHAIVEFTTV---KAAELIKCLASVRLS 69
A+ + FLE G T+ +E+ +N SR V+F T+ +AA+L+ L
Sbjct: 20 AKELWSFLESKLGPNTIYALEIATEHKNWKSRGFGRVQFETLQAKRAADLLSLQGD--LV 77
Query: 70 YGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKLCS 129
+ S L S R + D L+ G + D VL S E V +
Sbjct: 78 FRGSSLSISAT---FDDIIVRPVEPRNQVDSGVLHVGFLVEDDCMLVLESWEGVKTLVMP 134
Query: 130 DIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIYEN------ 183
+ + EF++ + YKLE+ ++ + + G L+++L P I++
Sbjct: 135 ERNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYAPKIFQKFAGPNI 194
Query: 184 ----------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYKE 227
E +R DF+ S+ QS+ C E+ F YYK+
Sbjct: 195 ASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFPALDIFASFPYYKD 254
Query: 228 SPVQFTLVPGSVFSCNSDLVHMT 250
+ TL G F +S LV +
Sbjct: 255 L-TELTLEQGEGFCSDSGLVPLV 276
>gi|147861988|emb|CAN78764.1| hypothetical protein VITISV_003317 [Vitis vinifera]
Length = 1375
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L +HG +KKRKR K V+ + + CFFCK GHMKK C KY
Sbjct: 210 LASTSHGFGTNKKRKRDNKGKQTAVSGTSKQKVQKKQBKEITCFFCKKVGHMKKTCTKYA 269
Query: 295 TWVVKE 300
W K+
Sbjct: 270 AWXEKK 275
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 113/271 (41%), Gaps = 41/271 (15%)
Query: 11 ASHVSARAVKEFLEGHTGEGTVSDVE-VGQNKG--SRAHAIVEFTTVKAAE-LIKCLASV 66
AS ++A + F T G E V ++G SR H V+F + AA I +S
Sbjct: 21 ASAIAAELLAFFDSAVTIAGATFACEIVAAHRGWLSRGHGFVQFDSSAAATHAIDLASSG 80
Query: 67 RLS-YGNSYLKASDAQR----RTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQE 121
RL + S L S A+ R P + R L G +++ + V +S +
Sbjct: 81 RLPPFLGSCLSVSPARADLLPRAPDLSLRAA-------SASLILGNRVAERELEVAYSCD 133
Query: 122 NVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIY 181
V ++ +R+ + +L ++S YKLE+ +E I + G A +++QL P I+
Sbjct: 134 GVRAEVIPRMRRVDLYLKHDSQSYKLEVLFEDINECFGCHLDGTGA--ILLQLTYAPRIH 191
Query: 182 -------------ENEIHR---------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
++ H VR +DF P+SS + S + L+L A + L
Sbjct: 192 IAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYIL 251
Query: 220 KDFFYYKESPVQFTLVPGSVFSCNSDLVHMT 250
+ + E + + VF +S++V +
Sbjct: 252 ESLPFSGELG-ELAIASMDVFGSSSNVVPLV 281
>gi|147799313|emb|CAN72447.1| hypothetical protein VITISV_027001 [Vitis vinifera]
Length = 1051
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V+K + + CFFCK GHMKK C KY
Sbjct: 139 LASTSQGFGANKKRKRDNKGKQTAVSKTSKQKVQKKQDKEITCFFCKKAGHMKKTCTKYA 198
Query: 295 TWVVKE 300
TW K+
Sbjct: 199 TWCEKK 204
>gi|147845269|emb|CAN83369.1| hypothetical protein VITISV_011463 [Vitis vinifera]
Length = 1156
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V++ + + CFFCK GHMKK C KY
Sbjct: 174 LASTSQGFGANKKRKRDNKGKQTAVSETSKQKVQKKQDKEITCFFCKKTGHMKKTCTKYT 233
Query: 295 TW 296
W
Sbjct: 234 AW 235
>gi|147839923|emb|CAN61695.1| hypothetical protein VITISV_029441 [Vitis vinifera]
Length = 1581
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V+ + + CFFCK GHMKK C KY
Sbjct: 618 LASTSQGFGTNKKRKRDNKGKQTAVSGTSKQKEQKKQDKEITCFFCKKAGHMKKTCTKYA 677
Query: 295 TW 296
W
Sbjct: 678 AW 679
>gi|321455107|gb|EFX66250.1| hypothetical protein DAPPUDRAFT_116580 [Daphnia pulex]
Length = 455
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCKNKGH+K+AC KY+ W
Sbjct: 407 ITCFFCKNKGHIKRACRKYQRW 428
>gi|147800456|emb|CAN62045.1| hypothetical protein VITISV_040357 [Vitis vinifera]
Length = 1290
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V+ + + CFFCK GHMKK C KY
Sbjct: 209 LASTSQGFGTNKKRKRDNKGKQTTVSGTSKQKEQKKQDKEITCFFCKKAGHMKKTCTKYA 268
Query: 295 TW 296
W
Sbjct: 269 AW 270
>gi|147826545|emb|CAN64073.1| hypothetical protein VITISV_038270 [Vitis vinifera]
Length = 1181
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V+ + + CFFCK GHMKK C KY
Sbjct: 65 LASTSQGFGTNKKRKRDNKGKQTAVSGTSKQKEQKKQDKEITCFFCKKAGHMKKTCTKYA 124
Query: 295 TW 296
W
Sbjct: 125 AW 126
>gi|207367152|dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
Length = 1321
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 244 SDLVHMTHGKKKDKKRKRKRK--------ASINKVNKDAVNCFFCKNKGHMKKACPKYKT 295
S L+ +GK K K + +K A I KV K CFFCK KGHMKK CP ++
Sbjct: 171 SALLTTAYGKNKAIKSQAYQKGNGKIPPQADIKKVAK----CFFCKKKGHMKKNCPGFQK 226
Query: 296 WVVKE 300
W+ K+
Sbjct: 227 WLEKK 231
>gi|356495011|ref|XP_003516374.1| PREDICTED: uncharacterized protein LOC100804793 [Glycine max]
Length = 587
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 12/64 (18%)
Query: 244 SDLVHMTHGKKKDKKRKRKRK--------ASINKVNKDAVNCFFCKNKGHMKKACPKYKT 295
S L+ +GK K K + +K A I KV K CFFCK KGHMKK CP ++
Sbjct: 378 SALLTTAYGKNKTIKSQAYQKGNGKIPPQADIKKVAK----CFFCKKKGHMKKNCPGFQK 433
Query: 296 WVVK 299
W+ K
Sbjct: 434 WLEK 437
>gi|356577394|ref|XP_003556811.1| PREDICTED: LOW QUALITY PROTEIN: CBL-interacting
serine/threonine-protein kinase 3-like [Glycine max]
Length = 498
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 244 SDLVHMTHGKKKDKKRKRKRK--------ASINKVNKDAVNCFFCKNKGHMKKACPKYKT 295
S L+ +GK K K + +K A I KV K CFFCK KGHMKK CP ++
Sbjct: 419 SALLTTAYGKNKAIKSQANQKGNGKIPPQADIKKVAK----CFFCKKKGHMKKNCPGFQK 474
Query: 296 WVVKE 300
W+ K+
Sbjct: 475 WLEKK 479
>gi|321465013|gb|EFX76017.1| hypothetical protein DAPPUDRAFT_249618 [Daphnia pulex]
Length = 620
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 277 CFFCKNKGHMKKACPKYKTWVVK 299
C+FCKNKGH+K+AC KY+ W V+
Sbjct: 574 CYFCKNKGHIKRACRKYQRWRVE 596
>gi|321450160|gb|EFX62293.1| hypothetical protein DAPPUDRAFT_337150 [Daphnia pulex]
Length = 495
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 272 KDAVNCFFCKNKGHMKKACPKYKTW 296
+D C+FCKNKGH+K+AC KY+ W
Sbjct: 444 RDDRTCYFCKNKGHIKRACRKYQRW 468
>gi|321448741|gb|EFX61567.1| hypothetical protein DAPPUDRAFT_338954 [Daphnia pulex]
Length = 300
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 254 CFFCKNKGHIKRACRKYQRW 273
>gi|321454124|gb|EFX65309.1| hypothetical protein DAPPUDRAFT_117387 [Daphnia pulex]
Length = 561
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 515 CFFCKNKGHIKRACRKYQRW 534
>gi|321456436|gb|EFX67544.1| hypothetical protein DAPPUDRAFT_115370 [Daphnia pulex]
Length = 298
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 272 KDAVNCFFCKNKGHMKKACPKYKTW 296
+D C+FCKN+GH+K+AC KY+ W
Sbjct: 247 RDDRTCYFCKNRGHIKRACRKYQRW 271
>gi|321462405|gb|EFX73429.1| hypothetical protein DAPPUDRAFT_325300 [Daphnia pulex]
Length = 595
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 549 CFFCKNKGHIKRACRKYQRW 568
>gi|321451209|gb|EFX62938.1| hypothetical protein DAPPUDRAFT_119702 [Daphnia pulex]
Length = 561
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 515 CFFCKNKGHIKRACRKYQRW 534
>gi|321451240|gb|EFX62960.1| hypothetical protein DAPPUDRAFT_336146 [Daphnia pulex]
Length = 382
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 336 CFFCKNKGHIKRACRKYQRW 355
>gi|321453795|gb|EFX64998.1| hypothetical protein DAPPUDRAFT_333628 [Daphnia pulex]
Length = 384
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 338 CFFCKNKGHIKRACRKYQRW 357
>gi|321446649|gb|EFX60908.1| hypothetical protein DAPPUDRAFT_341033 [Daphnia pulex]
Length = 481
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 435 CFFCKNKGHIKRACRKYQRW 454
>gi|147799247|emb|CAN77003.1| hypothetical protein VITISV_028505 [Vitis vinifera]
Length = 507
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 4/37 (10%)
Query: 264 KASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
+ I KVN+ CFFCK KGHMKK C K++ W+ K+
Sbjct: 320 QGGIKKVNR----CFFCKKKGHMKKGCTKFQKWLEKK 352
>gi|147864970|emb|CAN83623.1| hypothetical protein VITISV_010870 [Vitis vinifera]
Length = 1601
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 244 SDLVHMTHGKKKDKKRKRKRKASIN---KVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
++ H+ K KRK K AS K K V CFFC GH KK C KY W VK+
Sbjct: 552 TESAHLASTSKDKGKRKNKVAASNGPEQKKXKVEVTCFFCNKPGHTKKECTKYAAWRVKK 611
>gi|321464833|gb|EFX75838.1| hypothetical protein DAPPUDRAFT_322911 [Daphnia pulex]
Length = 286
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 272 KDAVNCFFCKNKGHMKKACPKYKTW 296
+D C+FCKN+GH+K+AC KY+ W
Sbjct: 235 RDDRTCYFCKNRGHIKRACRKYQKW 259
>gi|321473418|gb|EFX84385.1| hypothetical protein DAPPUDRAFT_314649 [Daphnia pulex]
Length = 229
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 183 CFFCKNKGHIKRACRKYQRW 202
>gi|321461188|gb|EFX72222.1| hypothetical protein DAPPUDRAFT_110963 [Daphnia pulex]
Length = 420
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 374 CFFCKNKGHIKRACRKYQRW 393
>gi|321463862|gb|EFX74874.1| hypothetical protein DAPPUDRAFT_108329 [Daphnia pulex]
Length = 626
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 272 KDAVNCFFCKNKGHMKKACPKYKTW 296
+D C+FCKN+GH+K+AC KY+ W
Sbjct: 575 RDDRTCYFCKNRGHIKRACRKYQRW 599
>gi|321464029|gb|EFX75040.1| hypothetical protein DAPPUDRAFT_108301 [Daphnia pulex]
Length = 900
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKNKGH+K+AC KY+ W
Sbjct: 119 CFFCKNKGHIKRACRKYQRW 138
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 103/261 (39%), Gaps = 45/261 (17%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEV---GQNKGSRAHAIVEFTTVKA- 56
++ + + +A+ + +FLE G TV +E+ N SR V+F T+ A
Sbjct: 8 LSHTVRVSNIPQSATAKDLLDFLESTLGSSTVFALEIFSDNPNWKSRGFGRVQFETLDAR 67
Query: 57 AELIKCLASVRLSYGNSYLKASDAQR----RTPHYAKRGIPHYQLGDDLKLNFGCHISKD 112
+ + +L + +L+ S+ R H + G+ L G +S
Sbjct: 68 SRALSLSQLNQLLFNRHFLRLSETDSDIIFRPQHRLQNGV----------LYAGFMLSDH 117
Query: 113 KFSVLWSQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHR-PRGHPAKY-- 169
+ SVL S E ++ + ++ +F++ + Y+LE +E I +E H G A+
Sbjct: 118 RMSVLESWEGIAGWVLPQRKRLDFWVWHNGDCYRLEFLFEDI--LESHGYCLGEDARLNA 175
Query: 170 LVIQLYGVPMIYEN----------------------EIHRVREVDFAPSSSIEQSSDICL 207
L++++ P IY+ E VR DF+P SI S+ C
Sbjct: 176 LLLKMKFGPRIYKKKTGTDVAANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCW 235
Query: 208 ELPSRAHIPKALKDFFYYKES 228
E+ F YKE+
Sbjct: 236 EIVEEHLASDVFTSFPLYKEN 256
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 28/262 (10%)
Query: 15 SARAVKEFLEGHTGEGTVSDVEVGQ---NKGSRAHAIVEFTTVKAAELIKCLASVRLSYG 71
+A + +LE G +V +E+ N SR V+F T++A LA +
Sbjct: 21 TANDLLRYLETTVGRSSVFALEIFSDYTNWKSRGVGRVQFETLEAKSKALTLAENKKLLL 80
Query: 72 NSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKLCSDI 131
+S+ DA + +P ++ + L G I D SVL S E V + +
Sbjct: 81 SSHFLCLDASSDDI-IPRPALPRNRINNG-ALYAGFPIGPDCMSVLQSWEGVRGWVMPER 138
Query: 132 RKFEFFLSYESVDYKLELSYESIWQIELH-RPRGHPAKYLVIQLYGVPMIYEN------- 183
++ +F++++ +KLE+ +E+I + + + G L+++L P IY+
Sbjct: 139 QRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLKLRYGPRIYQKMAGPNVA 198
Query: 184 ---------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFYYKES 228
E VR DF+ SI S+ E+ + + F Y+E+
Sbjct: 199 AKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIVEESFDSDVFRSFPLYREN 258
Query: 229 PVQFTLVPGSVFSCNSDLVHMT 250
+L G F ++ V +
Sbjct: 259 LKDLSLEDGEKFCSPTETVPLV 280
>gi|147837097|emb|CAN61558.1| hypothetical protein VITISV_035098 [Vitis vinifera]
Length = 320
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GHMKK C KY TW
Sbjct: 254 ITCFFCKKAGHMKKTCTKYATW 275
>gi|356546178|ref|XP_003541508.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38,
chloroplastic-like [Glycine max]
Length = 775
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 244 SDLVHMTHGKKKDKKRKRKRK--------ASINKVNKDAVNCFFCKNKGHMKKACPKYKT 295
S L+ +GK K K + +K A+I KV K CFFCK GH KK CP ++
Sbjct: 256 SALLTTAYGKNKVTKSQANQKGNDKIPPQANIKKVAK----CFFCKKNGHKKKNCPGFQK 311
Query: 296 WVVKE 300
W+ K+
Sbjct: 312 WLEKK 316
>gi|147777135|emb|CAN63402.1| hypothetical protein VITISV_030427 [Vitis vinifera]
Length = 1403
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GHMKK C KY TW
Sbjct: 570 ITCFFCKKAGHMKKTCTKYATW 591
>gi|147781115|emb|CAN74042.1| hypothetical protein VITISV_012948 [Vitis vinifera]
Length = 702
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 243 NSDLVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACP 291
N+ L + G KKRKR K + + + CFFCK GHMKK C
Sbjct: 84 NAHLASTSQGFGTSKKRKRDNKGKQTAFSGTSKQKVQKKQDKEITCFFCKKVGHMKKTCT 143
Query: 292 KYKTW 296
KY W
Sbjct: 144 KYTAW 148
>gi|147821001|emb|CAN75389.1| hypothetical protein VITISV_011070 [Vitis vinifera]
Length = 987
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L ++ G +KKRKR K ++ + + CFFCK HMKK C KY
Sbjct: 255 LASISQGFGTNKKRKRDNKGKQTAFSRTSKQKVQKKQDKKITCFFCKKASHMKKTCTKYT 314
Query: 295 TWVVKE 300
W K+
Sbjct: 315 AWCEKK 320
>gi|147772126|emb|CAN69052.1| hypothetical protein VITISV_007852 [Vitis vinifera]
Length = 1104
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G KKRK K V++ + + CFFCK GHMKK C KY
Sbjct: 209 LASTSQGFGAKKKRKMDNKGKQTAVSETSKQKVQKKQDKKITCFFCKKTGHMKKTCTKYA 268
Query: 295 TW 296
W
Sbjct: 269 AW 270
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 34/265 (12%)
Query: 14 VSARAVKEFLEGHTGEGTVSDVEVG---QNKGSRAHAIVEFTTVKAAELIKCLASVRLSY 70
++A+ + ++L G+ +V +E+ +N SR V+F++++ ++ LS
Sbjct: 19 ITAKEILQYLVAQLGKDSVFAIEISTVRKNWNSRGFGRVQFSSLEVKH-----EALSLSL 73
Query: 71 GNSYLKASDAQRRTPHY---AKRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENVSVKL 127
N + S + + Y R + ++ L G + VL E V
Sbjct: 74 KNKLVLKSQNLKLSETYDDIIPRPVKDQNRMENGVLYVGFMKKETTLCVLEYWEGVRGWF 133
Query: 128 CSDIRKFEFFLSY-ESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIYEN--- 183
+ R+ EF++ + YKL + +E I + + G +V++L P IY+
Sbjct: 134 MPERRRIEFWIRVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVLKLRYGPRIYQKISG 193
Query: 184 -------------------EIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFY 224
+ VR D + SI QS+ C E+ ++F Y
Sbjct: 194 PGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEIGEGLEASDTFRNFPY 253
Query: 225 YKESPVQFTLVPGSVFSCNSDLVHM 249
Y+E + L G F S+ V +
Sbjct: 254 YQEDMNRLDLEDGEEFCSASETVPL 278
>gi|147768268|emb|CAN73613.1| hypothetical protein VITISV_023299 [Vitis vinifera]
Length = 1815
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 252 GKKKDKKRK-RKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
GK+K+K K K K V CFFC GH KK C KY W VK+
Sbjct: 266 GKRKNKDNKVAXSNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKK 315
>gi|147816553|emb|CAN61880.1| hypothetical protein VITISV_018026 [Vitis vinifera]
Length = 1001
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRK---RKASINKVNKD--------AVNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR ++ +++ +K + CFFCK GHMKK C KY
Sbjct: 209 LASTSQGFGTNKKRKRDNIGKQTAVSGTSKQNEQKKQDKEITCFFCKKVGHMKKTCTKYA 268
Query: 295 TW 296
W
Sbjct: 269 AW 270
>gi|147845375|emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
Length = 1354
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 252 GKKKDKKRK-RKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
GK+K+K K K K V CFFC GH KK C KY W VK+
Sbjct: 266 GKRKNKDNKVAASNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKK 315
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 173 QLYGVPMIY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
QL+G P IY EN + VR DF PS I SS +CL+ H+P
Sbjct: 17 QLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 220 KDFFYYKESPVQFTLVPGSVF 240
+ FF+Y E TL G F
Sbjct: 76 ESFFHYAERENNITLQTGFTF 96
>gi|147769971|emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
Length = 1356
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 252 GKKKDKKRK-RKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
GK+K+K K K K V CFFC GH KK C KY W VK+
Sbjct: 221 GKRKNKDNKVAASNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKK 270
>gi|321454792|gb|EFX65947.1| hypothetical protein DAPPUDRAFT_332669 [Daphnia pulex]
Length = 739
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCK KGH+K+AC KY+ W
Sbjct: 564 CFFCKKKGHIKRACRKYQRW 583
>gi|147815251|emb|CAN74421.1| hypothetical protein VITISV_010977 [Vitis vinifera]
Length = 972
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 244 SDLVHMTHGKKKDKKRKRK--RKASIN----KVNKDAVNCFFCKNKGHMKKACPKYKTWV 297
++ H+ K KRK K + A+ N K K V CFFC GH KK C KY W
Sbjct: 155 TESAHLASTSKDKGKRKNKDNKVATSNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWR 214
Query: 298 VKE 300
VK+
Sbjct: 215 VKK 217
>gi|147770377|emb|CAN78154.1| hypothetical protein VITISV_032622 [Vitis vinifera]
Length = 1250
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 258 KRKRKRKASINKV----------NKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
K K KRK NKV K V CFFC GH KK C KY W VK+
Sbjct: 185 KDKGKRKNKDNKVAASNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWRVKK 237
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 173 QLYGVPMIY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
+L+G P IY EN + VR DFAPS I SS +CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 220 KDFFYYKESPVQFTLVPGSVF 240
+ FF+Y E TL G F
Sbjct: 76 ESFFHYAERENNITLQTGFTF 96
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 173 QLYGVPMIY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
+L+G P IY EN + VR DFAPS I SS +CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 220 KDFFYYKESPVQFTLVPGSVF 240
+ FF+Y E TL G F
Sbjct: 76 ESFFHYAERENNITLQTGFTF 96
>gi|147789088|emb|CAN71426.1| hypothetical protein VITISV_002521 [Vitis vinifera]
Length = 1489
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GHMKK C KY W
Sbjct: 593 ITCFFCKKAGHMKKTCTKYAAW 614
>gi|147802450|emb|CAN61645.1| hypothetical protein VITISV_036929 [Vitis vinifera]
Length = 1014
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 244 SDLVHMTHGKKKDKKRKRK--RKASIN----KVNKDAVNCFFCKNKGHMKKACPKYKTWV 297
++ H+ K KRK K + A+ N K K V CFFC GH KK C KY W
Sbjct: 211 TESAHLASTSKDKGKRKNKDNKVAASNGPEQKKQKVEVTCFFCNKPGHTKKECTKYAAWR 270
Query: 298 VKE 300
VK+
Sbjct: 271 VKK 273
>gi|147810529|emb|CAN67457.1| hypothetical protein VITISV_039473 [Vitis vinifera]
Length = 558
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GH+KK C KY TW
Sbjct: 262 ITCFFCKKTGHIKKTCTKYATW 283
>gi|147862476|emb|CAN84004.1| hypothetical protein VITISV_021420 [Vitis vinifera]
Length = 532
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GHMKK C KY W
Sbjct: 262 ITCFFCKKAGHMKKTCTKYAAW 283
>gi|147856247|emb|CAN81793.1| hypothetical protein VITISV_020571 [Vitis vinifera]
Length = 1193
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDA-----------VNCFFCKNKGHMKKACPKYK 294
L + G +KKRKR K V+ + + CFF K GHMKK C KY
Sbjct: 72 LASTSQGFGTNKKRKRDNKGKQTAVSGTSKQKEQKKQDKEITCFFYKKAGHMKKTCTKYA 131
Query: 295 TW 296
W
Sbjct: 132 AW 133
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 173 QLYGVPMIY---ENEIHR----------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
+L+G P IY EN + VR DFAPS I SS +CL+ H+P
Sbjct: 17 RLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSW-IGLSSSLCLQFRRGVHLPNFQ 75
Query: 220 KDFFYYKESPVQFTLVPGSVF 240
+ FF+Y E TL G F
Sbjct: 76 EKFFHYAERENNITLQTGFTF 96
>gi|147803319|emb|CAN75475.1| hypothetical protein VITISV_006889 [Vitis vinifera]
Length = 1028
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK GHMKK C KY W
Sbjct: 209 ITCFFCKKAGHMKKTCTKYAAW 230
>gi|147861593|emb|CAN79309.1| hypothetical protein VITISV_020559 [Vitis vinifera]
Length = 1851
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 264 KASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
+ I KVNK CFF K KGHMKK C K++ W+ K+
Sbjct: 228 QGGIKKVNK----CFFYKKKGHMKKGCTKFQKWLEKK 260
>gi|321456996|gb|EFX68091.1| hypothetical protein DAPPUDRAFT_260582 [Daphnia pulex]
Length = 609
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 277 CFFCKNKGHMKKACPKYKTW 296
CFFCKN+ H+K+AC KY+ W
Sbjct: 563 CFFCKNREHIKRACRKYQRW 582
>gi|31432368|gb|AAP54011.1| transposon protein, putative, unclassified [Oryza sativa Japonica
Group]
Length = 417
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 256 DKKRKRKRKASINKVNKDAVN------CFFCKNKGHMKKACPKYKTWVVK 299
+KKRK K + K N C+FCK +GHMKK C KY W K
Sbjct: 221 NKKRKSKEAVDVQPPLKKRENNCGEEPCYFCKKEGHMKKNCTKYHAWRAK 270
>gi|147810308|emb|CAN66883.1| hypothetical protein VITISV_000960 [Vitis vinifera]
Length = 691
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 254 KKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYK 294
KK K K ++ I K N+ CFFCK KGHMKK C K++
Sbjct: 174 KKKGKSKILSQSGIKKTNR----CFFCKKKGHMKKGCTKFQ 210
>gi|147765833|emb|CAN62431.1| hypothetical protein VITISV_015835 [Vitis vinifera]
Length = 1217
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 269 KVNKDAVNCFFCKNKGHMKKACPKYKTWVVKE 300
K K V CFFC GH KK C KY W VK+
Sbjct: 240 KKQKVEVTCFFCNKPGHTKKECTKYAAWRVKK 271
>gi|222612917|gb|EEE51049.1| hypothetical protein OsJ_31709 [Oryza sativa Japonica Group]
Length = 357
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 256 DKKRKRKRKASINKVNKDAVN------CFFCKNKGHMKKACPKYKTWVVK 299
+KKRK K + K N C+FCK +GHMKK C KY W K
Sbjct: 221 NKKRKSKEAVDVQPPLKKRENNCGEEPCYFCKKEGHMKKNCTKYHAWRAK 270
>gi|218184639|gb|EEC67066.1| hypothetical protein OsI_33824 [Oryza sativa Indica Group]
Length = 516
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 245 DLVHMTHGKKKDKKRKRKRKASIN--------KVNKDAVNCFFCKNKGHMKKACPKYKTW 296
D + H +KRK K +++ + N+ C+FC+ +GHMKK C KY W
Sbjct: 63 DRIESAHLSMTSNNKKRKSKEAVDVQPPLKKRENNRGEDPCYFCQKEGHMKKNCTKYHAW 122
Query: 297 VVK 299
K
Sbjct: 123 RAK 125
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 256 DKKRKRKRKASINKVNKDAVN------CFFCKNKGHMKKACPKYKTWVVK 299
+KKRK K + K N C+FCK +GHMKK C KY W K
Sbjct: 342 NKKRKSKEAVDVQPPLKKRENNCGEELCYFCKKEGHMKKNCTKYHAWRAK 391
>gi|405961574|gb|EKC27358.1| hypothetical protein CGI_10003587 [Crassostrea gigas]
Length = 328
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 236 PGSVFSCNSDLVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACP---K 292
PGS ++C + K+ R + S N NCF CK +GH K CP K
Sbjct: 195 PGSCYTCGEPGHYSPDCPTKENNRGSTSQQSTNYSRPSNNNCFICKKEGHWMKDCPENLK 254
Query: 293 YKTWVVKE 300
K W +E
Sbjct: 255 NKYWADQE 262
>gi|385301729|gb|EIF45898.1| retrotransposon ty1-copia subclass [Dekkera bruxellensis AWRI1499]
Length = 517
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 249 MTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTW 296
+T GK+ K++ + + K + CFFCK +GH KK C +YK W
Sbjct: 142 VTQGKRGSKRKSDNSEEHPKR--KKKLVCFFCKREGHFKKECSEYKKW 187
>gi|405954050|gb|EKC21588.1| hypothetical protein CGI_10003680 [Crassostrea gigas]
Length = 241
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 236 PGSVFSCNSDLVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACP---K 292
PGS ++C + K+ R + S N NCF CK +GH K CP K
Sbjct: 97 PGSCYTCGEPGHYSPDCPTKENNRGLTSQQSTNYSRPSNNNCFICKKEGHWMKDCPENLK 156
Query: 293 YKTWVVKE 300
K W +E
Sbjct: 157 NKYWADQE 164
>gi|328698203|ref|XP_003240576.1| PREDICTED: hypothetical protein LOC100570031 [Acyrthosiphon pisum]
Length = 1029
Score = 38.5 bits (88), Expect = 3.6, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 270 VNKDAVNCFFCKNKGHMKKACPKYKTWVVK 299
+N D V CF CK KGH+ CP KT +V+
Sbjct: 923 INDDMVTCFHCKLKGHISNQCPNLKTQLVQ 952
>gi|409051610|gb|EKM61086.1| hypothetical protein PHACADRAFT_247456 [Phanerochaete carnosa
HHB-10118-sp]
Length = 584
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 22/259 (8%)
Query: 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAH---AIVEFTTVKAAE 58
A+ + + A+ ++AR + F E GEG V D + ++ SR VEF T++ E
Sbjct: 253 ARSVFVSQLAARLTARDLGYFFEDKLGEGAVMDSRIVTDRISRRSKGIGYVEFRTIELVE 312
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
L+ + ++ ++A+R H GD L L G +
Sbjct: 313 KAIGLSGTIVMGLPIQVQHTEAERNRTH----------AGDSLHLPPGVSSHHGGMQLYV 362
Query: 119 SQENVSVKLCSDIRK-FEFFLSYESVD-YKLELSYESIWQIELHRPRGHPAKYLVIQLYG 176
+ ++ SDIR+ FE F E VD ++ ++ S + RG AK + Q+ G
Sbjct: 363 GSLHFNL-TESDIRQVFEPFGELEFVDLHRDPMTGRSKGYAFVQYKRGEDAKMALEQMEG 421
Query: 177 VPM----IYENEIHRVREVDFAPSSSIEQSSDICLELPSRAHIPKAL--KDFFYYKESPV 230
+ + N +H V + P S++ + L SR + + L D + P+
Sbjct: 422 FELAGRTLRVNTVHEKGNVRYTPQESLDDTGGGNLNAASRQALMQKLARTDQPAARPQPI 481
Query: 231 QFTLVPGSVFSCNSDLVHM 249
+P S+ S + L +M
Sbjct: 482 MKPNIPQSMQSKSVLLKNM 500
>gi|388852481|emb|CCF53883.1| related to RNA-binding region containing protein 2 [Ustilago
hordei]
Length = 678
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 10 FASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLS 69
++ +S R + EF E H GEG V DV + ++ +R V + A EL+ ++ LS
Sbjct: 281 LSARLSQRDLGEFFEDHLGEGAVQDVRIVMDRLTRRSKGVGYVEFAARELVP--KAIELS 338
Query: 70 YGNSY-----LKASDAQRRTPHYAKRG 91
+ + ++ +DA R P YA G
Sbjct: 339 GKDLFGIPIIVQRTDAPRNGPAYAGPG 365
>gi|302142823|emb|CBI20118.3| unnamed protein product [Vitis vinifera]
Length = 1354
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 258 KRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVK 299
K+ + S N K V+C+FC KGH+KK C K K W K
Sbjct: 600 KKSGPGEGSQNHDGKFTVSCYFCGKKGHVKKDCIKRKAWFEK 641
>gi|147866780|emb|CAN83070.1| hypothetical protein VITISV_008961 [Vitis vinifera]
Length = 466
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 275 VNCFFCKNKGHMKKACPKYKTW 296
+ CFFCK HMKK C KY W
Sbjct: 174 ITCFFCKKVDHMKKICTKYVAW 195
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,728,861,999
Number of Sequences: 23463169
Number of extensions: 191393367
Number of successful extensions: 510409
Number of sequences better than 100.0: 274
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 510079
Number of HSP's gapped (non-prelim): 307
length of query: 301
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 160
effective length of database: 9,050,888,538
effective search space: 1448142166080
effective search space used: 1448142166080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)