BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022209
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 148/269 (55%), Gaps = 25/269 (9%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--GSRAHAIVEFTTVKAAE 58
M K I ++GF + VSA VK+FLE TG GTV ++V Q K G R +AIV+FT+ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 59 LIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVLW 118
LI A+ RL YG SYLKA + ++ + + H G LK+ FGC +S KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASL-HTISG--LKMFFGCQVSTKKFLTLW 117
Query: 119 SQENVSVKLCSDIRKFEFFLSYESVDYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVP 178
S ++V V +RK F S+ DY+LELSYE+IWQI+LH P+G +K+LVIQ+ G P
Sbjct: 118 SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 177
Query: 179 MIYENEIHR-------------------VREVDFAPSSSIEQSSDICLELPSRAHIPKAL 219
I+E E +R DF SS I QS+ CLELP ++P
Sbjct: 178 KIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 237
Query: 220 KDFFYYKE-SPVQFTLVPGSVFSCNSDLV 247
++F Y E F + GS +S N++ +
Sbjct: 238 ENFANYAEHRASSFLIESGSSYSSNANTL 266
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 33/268 (12%)
Query: 14 VSARAVKEFLEGHTGEGTVSDVEVGQNKGS---RAHAIVEFTTVKAAELIKCLAS-VRLS 69
+ A + FLE H GE TV +E+ + + R A V+FTT++ + L+S +L
Sbjct: 21 IVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRAQLLSSQSKLL 80
Query: 70 YGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDK-FSVLWSQENVSVKLC 128
+ L+ S+A R + + DD+ L G S +K F L + V +
Sbjct: 81 FKTHNLRLSEAY---DDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWDGVRCWIL 137
Query: 129 SDIRKFEFFLSYESVD-YKLELSYESIWQIELHRPRGHPAK---YLVIQLYGVPMIYENE 184
++ R+ EF++ +ES D YK+E+ +E I + G ++ +L+ YG +
Sbjct: 138 TEKRRVEFWV-WESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVT 196
Query: 185 IH--------------------RVREVDFAPSSSIEQSSDICLELPSRAHIPKALKDFFY 224
+H +R DF+ S SI S+ CLE+ + + + Y
Sbjct: 197 VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDIFSGLPY 256
Query: 225 YKESPVQFTLVPGSVFSCNSDLVHMTHG 252
Y+E + T V G F+ + +V + +
Sbjct: 257 YREDTLSLTYVDGKTFASAAQIVPLLNA 284
>sp|Q7TM95|TIGD3_MOUSE Tigger transposable element-derived protein 3 OS=Mus musculus
GN=Tigd3 PE=2 SV=1
Length = 470
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 209 LPSRAHIPKALKDF-----FYYKESPVQFTLVPGSVFSCNSDLVHMTHGKKKDKKRK 260
LPS+A P +LKDF F E P+ + VPG VF C+ V + + +KR+
Sbjct: 154 LPSQAQPPLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRR 210
>sp|P27460|GAG_MLVCB Gag polyprotein OS=Cas-Br-E murine leukemia virus GN=gag PE=3 SV=3
Length = 536
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+K+D++ +R+ ++K C +CK KGH K CPK
Sbjct: 476 LATVVSGQKQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|P03355|POL_MLVMS Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate
Shinnick) GN=gag-pol PE=1 SV=4
Length = 1738
Score = 37.7 bits (86), Expect = 0.12, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+K+D++ +R++ + D C +CK KGH K CPK
Sbjct: 478 LATVVSGQKQDRQGGERRRSQL-----DRDQCAYCKEKGHWAKDCPK 519
>sp|P03332|GAG_MLVMS Gag polyprotein OS=Moloney murine leukemia virus (isolate Shinnick)
GN=gag PE=1 SV=4
Length = 538
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+K+D++ +R++ + D C +CK KGH K CPK
Sbjct: 478 LATVVSGQKQDRQGGERRRSQL-----DRDQCAYCKEKGHWAKDCPK 519
>sp|P03336|GAG_MLVAV Gag polyprotein OS=AKV murine leukemia virus GN=gag PE=1 SV=3
Length = 537
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 477 LATVVSGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 518
>sp|P29167|GAG_MLVBM Gag polyprotein OS=Murine leukemia virus (strain BM5 eco) GN=gag
PE=3 SV=3
Length = 537
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 477 LATVVTGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 518
>sp|P21435|GAG_MLVHO Gag polyprotein OS=Hortulanus murine leukemia virus GN=gag PE=3
SV=3
Length = 540
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 480 LATVVSGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 521
>sp|Q8UN02|GAG80_MLVMN Glycosylated Gag polyprotein OS=Moloney murine leukemia virus
(strain neuropathogenic variant ts1-92b) GN=gag PE=3
SV=1
Length = 626
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R++ + D C +CK KGH K CPK
Sbjct: 566 LATVVSGQRQDRQGGERRRSQL-----DRDQCAYCKEKGHWAKDCPK 607
>sp|Q2F7J2|GAG_XMRV3 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP35)
GN=gag PE=3 SV=1
Length = 536
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 476 LATVVIGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|Q27ID9|GAG_XMRV6 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag PE=3 SV=1
Length = 536
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 476 LATVVIGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|Q2F7I9|GAG_XMRV4 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag PE=3 SV=1
Length = 536
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 476 LATVVIGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|P29168|GAG_MLVDE Gag polyprotein OS=Murine leukemia virus (strain DEF27) GN=gag PE=3
SV=3
Length = 536
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 476 LATVVTGQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
Length = 529
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ + D C +CK KGH K CPK
Sbjct: 469 LATVVTGQRQDRQGGERRRPQL-----DEDQCAYCKEKGHWAKDCPK 510
>sp|Q2F7J0|POL_XMRV4 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42)
GN=gag-pol PE=3 SV=1
Length = 1733
Score = 35.8 bits (81), Expect = 0.38, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 252 GKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 482 GQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|A1Z651|POL_XMRV6 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 35.8 bits (81), Expect = 0.40, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 252 GKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 482 GQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|Q2F7J3|POL_XMRV3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35)
GN=gag-pol PE=1 SV=1
Length = 1733
Score = 35.8 bits (81), Expect = 0.40, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 252 GKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
G+++D++ +R+ ++K C +CK KGH K CPK
Sbjct: 482 GQRQDRQGGERRRPQLDKDQ-----CAYCKEKGHWAKDCPK 517
>sp|P11269|GAG_MLVRD Gag polyprotein OS=Radiation murine leukemia virus GN=gag PE=1 SV=3
Length = 537
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +++ ++K C +CK KGH K CPK
Sbjct: 477 LATVVTGQRQDRQGGERKRPQLDKDQ-----CAYCKEKGHWAKDCPK 518
>sp|P26805|GAG_MLVFP Gag polyprotein OS=Friend murine leukemia virus (isolate PVC-211)
GN=gag PE=3 SV=3
Length = 538
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ + D C +CK KGH + CPK
Sbjct: 478 LATVVSGQRQDRQGGERRRPQL-----DHDQCAYCKEKGHWARDCPK 519
>sp|P26806|GAG_MLVFF Gag polyprotein OS=Friend murine leukemia virus (isolate FB29)
GN=gag PE=1 SV=3
Length = 538
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ + D C +CK KGH + CPK
Sbjct: 478 LATVVSGQRQDRQGGERRRPQL-----DHDQCAYCKEKGHWARDCPK 519
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 85/229 (37%), Gaps = 60/229 (26%)
Query: 1 MAKKISLYGFASHVSARAVKEFLEGHTG-------------EGTVSDVEVGQN------- 40
+ ++S+ GF +A+ + ++LE G G+ + E+
Sbjct: 11 VVTQVSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEIADTSNIPSID 70
Query: 41 --KGSRAHAIVEFTTVKAA----------ELIKCLASVRLSYGNSYLKASDAQRRTPHYA 88
K HA V F ++A LI +++S G + + +RRT
Sbjct: 71 EYKKVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVSLGPKNPYSLNQRRRT---- 126
Query: 89 KRGIPHYQLGDDLKLNFGCHISKDKFSVLWSQENV---------SVKLCSDIRKFEFFLS 139
+P+ G + L G +S+D F V W E V + K C RK F
Sbjct: 127 --TVPYKLAG--ITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFC--FRKSTAFSF 180
Query: 140 YESV-------DYKLELSYESIWQIELHRPRGHPAKYLVIQLYGVPMIY 181
++V DYKLEL I + ++ L++QL P ++
Sbjct: 181 KDAVMHAVINCDYKLELLVRDIQTVRQYKTLH--GFVLILQLASSPRVW 227
>sp|P26807|GAG_MLVF5 Gag polyprotein OS=Friend murine leukemia virus (isolate 57) GN=gag
PE=3 SV=3
Length = 539
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
L + G+++D++ +R+ + D C +CK KGH + CPK
Sbjct: 479 LATVISGQRQDRQGGERRRPQL-----DHDQCAYCKEKGHWARDCPK 520
>sp|P14380|YTX1_XENLA Transposon TX1 uncharacterized 82 kDa protein OS=Xenopus laevis
PE=4 SV=1
Length = 775
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 273 DAVNCFFCKNKGHMKKACPK 292
+ V CF CKN GH +++CPK
Sbjct: 238 EEVRCFLCKNLGHTRQSCPK 257
>sp|Q6B0B8|TIGD3_HUMAN Tigger transposable element-derived protein 3 OS=Homo sapiens
GN=TIGD3 PE=1 SV=1
Length = 471
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 209 LPSRAHIPKALKDF-----FYYKESPVQFTLVPGSVFSCNSDLVHMTHGKKKDKKRKRKR 263
L S+A +P +LKDF F E P+ + VPGS +C+ V + + +KR+
Sbjct: 154 LTSQAQLPLSLKDFSPEDVFGCAELPLLYRAVPGSFGACDQVQVLLCANSRGTEKRR--- 210
Query: 264 KASINKVNKDAVNCFF 279
+ + A CFF
Sbjct: 211 --VLLGGLQAAPRCFF 224
>sp|B3PL12|SYFA_CELJU Phenylalanine--tRNA ligase alpha subunit OS=Cellvibrio japonicus
(strain Ueda107) GN=pheS PE=3 SV=1
Length = 337
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 28/91 (30%)
Query: 185 IHRVREVDFAPSSSIEQSSDI--------CLELPSRAHIPKALKDFFYYKE--------S 228
+ R+ E+ A S+E+ +I L +PS H +A+ D FY + S
Sbjct: 113 LQRIEEIFAAVGYSVEEGPEIEDDYHNFEALNIPSH-HPARAMHDTFYVDDTHVLRTHTS 171
Query: 229 PVQF-----------TLVPGSVFSCNSDLVH 248
PVQ + PG V+ C+SD+ H
Sbjct: 172 PVQVRTMENKKPPIRVICPGRVYRCDSDMTH 202
>sp|A1U2B9|SYFA_MARAV Phenylalanine--tRNA ligase alpha subunit OS=Marinobacter aquaeolei
(strain ATCC 700491 / DSM 11845 / VT8) GN=pheS PE=3 SV=1
Length = 332
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 28/91 (30%)
Query: 185 IHRVREVDFAPSSSIEQSSDI--------CLELPSRAHIPKALKDFFYYK--------ES 228
+ R+ E+ S+EQ +I L +P H +A+ D FY+ S
Sbjct: 113 LQRIEEIFARAGYSVEQGPEIEDDYHNFEALNIPGH-HPARAMHDTFYFNPGTLLRTHTS 171
Query: 229 PVQF-----------TLVPGSVFSCNSDLVH 248
PVQ + PG V+ C+SD+ H
Sbjct: 172 PVQIRTMEAGKPPFRMICPGRVYRCDSDMTH 202
>sp|P10262|GAG_FLV Gag polyprotein OS=Feline leukemia virus GN=gag PE=3 SV=1
Length = 580
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 252 GKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPK 292
+ +DK R+ + K+ C +CK KGH + CPK
Sbjct: 524 AQNRDKDREENKLGDQRKIPLGKDQCAYCKEKGHWVRDCPK 564
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 254 KKDKKRKRKRK-ASINKVNKDAVN--CFFCKNKGHMKKACPKYKTWVV 298
+ D KR + R+ A++N +D N C C NKGH CP+ + W
Sbjct: 344 ENDHKRNQLRELAALNGTLRDDENQLCKNCGNKGHRAFECPEQRNWTA 391
>sp|Q9HFF2|YL92_SCHPO Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC683.02c PE=4 SV=1
Length = 218
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 253 KKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWV 297
++K K+ + +R IN+ N+D CF C+ +GH+ + CP+ K V
Sbjct: 56 RQKKKRSEYRRLRRINQRNRDKF-CFACRQQGHIVQDCPEAKDNV 99
>sp|Q60AZ0|SYFA_METCA Phenylalanine--tRNA ligase alpha subunit OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=pheS PE=3 SV=1
Length = 341
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 24/83 (28%)
Query: 189 REVDFAPSSSIEQSSDI----CLELPSRAHIPKALKDFFYYKE--------SPVQF---- 232
R V F+ E D L +P+ H +A+ D FY+ E SPVQ
Sbjct: 122 RSVGFSVVEGPEIEDDFHNFEALNIPAH-HPARAMHDTFYFSEHLLLRTHTSPVQIRVME 180
Query: 233 -------TLVPGSVFSCNSDLVH 248
+ PG V+ C+SDL H
Sbjct: 181 SGQPPLRVIAPGRVYRCDSDLTH 203
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 277 CFFCKNKGHMKKACPKYK 294
CF C +GH+KK CP++K
Sbjct: 1449 CFICGREGHIKKECPQFK 1466
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 263 RKASINKVNKDAVNCFFCKNKGHMKKACPK 292
RK + K V C CK +GH+KK CP+
Sbjct: 947 RKLTFTKGKSPTVVCSLCKREGHLKKDCPE 976
>sp|B5Z8J6|RL7_HELPG 50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain G27)
GN=rplL PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 50 EFTTVKA---AELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGI 92
EF + A AE IK + VR G +A DA +TPH K G+
Sbjct: 58 EFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGV 103
>sp|B6JN38|RL7_HELP2 50S ribosomal protein L7/L12 OS=Helicobacter pylori (strain P12)
GN=rplL PE=3 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 50 EFTTVKA---AELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGI 92
EF + A AE IK + VR G +A DA +TPH K G+
Sbjct: 58 EFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGV 103
>sp|P03341|GAG_BAEVM Gag polyprotein OS=Baboon endogenous virus (strain M7) GN=gag PE=3
SV=4
Length = 537
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 269 KVNKDAVNCFFCKNKGHMKKACPK 292
KV+KD C +CK +GH K CPK
Sbjct: 497 KVDKD--QCAYCKERGHWIKDCPK 518
>sp|P03334|GAG_MSVMO Gag polyprotein OS=Moloney murine sarcoma virus GN=gag PE=1 SV=3
Length = 538
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 246 LVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKAC 290
L + G+++D++ +R++ + D C +C+ +GH K C
Sbjct: 478 LATVVSGQRQDRQEGERRRSQL-----DCDQCTYCEEQGHWAKDC 517
>sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum
lycopersicum GN=ACS2 PE=1 SV=2
Length = 485
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 242 CNSDLVHMTHGKKKDKKRKRKRKASINKVNKDAVNC 277
CN DLVH+ + KD R I N D VNC
Sbjct: 265 CNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNC 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,042,343
Number of Sequences: 539616
Number of extensions: 4688869
Number of successful extensions: 12432
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 12399
Number of HSP's gapped (non-prelim): 65
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)