Query 022209
Match_columns 301
No_of_seqs 182 out of 480
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.7 7.1E-16 1.5E-20 132.2 11.1 81 1-85 33-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.6E-14 3.4E-19 136.5 10.0 76 3-82 270-348 (352)
3 PLN03120 nucleic acid binding 99.5 2.4E-14 5.2E-19 133.8 10.0 77 1-82 3-79 (260)
4 PF00076 RRM_1: RNA recognitio 99.5 2.2E-14 4.9E-19 104.2 7.6 68 5-76 1-70 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.2E-13 2.5E-18 130.5 9.5 94 3-111 4-100 (352)
6 KOG0149 Predicted RNA-binding 99.5 8.5E-14 1.8E-18 127.8 7.4 82 3-91 13-97 (247)
7 PF14259 RRM_6: RNA recognitio 99.5 2.1E-13 4.5E-18 100.7 8.1 68 5-76 1-70 (70)
8 TIGR01659 sex-lethal sex-letha 99.4 3.2E-13 7E-18 130.9 9.6 76 3-82 108-186 (346)
9 PLN03213 repressor of silencin 99.4 4.2E-13 9.2E-18 133.7 8.7 79 2-85 10-90 (759)
10 smart00362 RRM_2 RNA recogniti 99.4 2.2E-12 4.7E-17 91.7 9.1 71 4-78 1-72 (72)
11 KOG0988 RNA-directed RNA polym 99.4 9.2E-14 2E-18 148.5 2.1 243 2-252 10-299 (1145)
12 TIGR01645 half-pint poly-U bin 99.4 3.3E-12 7.1E-17 131.7 11.1 75 2-80 107-184 (612)
13 TIGR01645 half-pint poly-U bin 99.4 2.4E-12 5.1E-17 132.8 10.0 79 3-85 205-286 (612)
14 smart00360 RRM RNA recognition 99.3 4.8E-12 1E-16 89.4 7.8 68 7-78 1-71 (71)
15 TIGR01659 sex-lethal sex-letha 99.3 4.1E-12 8.9E-17 123.2 10.0 79 3-84 194-276 (346)
16 PLN03121 nucleic acid binding 99.3 4.4E-12 9.5E-17 117.4 9.3 75 3-82 6-80 (243)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 8.9E-12 1.9E-16 124.8 11.6 78 2-85 275-353 (481)
18 KOG0125 Ataxin 2-binding prote 99.3 3.6E-12 7.9E-17 121.8 8.3 105 3-112 97-202 (376)
19 COG0724 RNA-binding proteins ( 99.3 8.8E-12 1.9E-16 107.7 9.4 76 3-82 116-194 (306)
20 TIGR01622 SF-CC1 splicing fact 99.3 1.3E-11 2.9E-16 121.0 11.6 77 2-83 89-168 (457)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.3E-11 2.9E-16 123.5 11.6 78 2-85 2-80 (481)
22 TIGR01628 PABP-1234 polyadenyl 99.3 8E-12 1.7E-16 126.4 10.0 79 2-84 285-365 (562)
23 TIGR01648 hnRNP-R-Q heterogene 99.3 8.8E-12 1.9E-16 128.0 8.8 74 3-79 59-134 (578)
24 cd00590 RRM RRM (RNA recogniti 99.3 4.2E-11 9.2E-16 85.4 9.4 71 4-78 1-73 (74)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.7E-11 3.6E-16 121.7 9.8 77 3-83 296-375 (509)
26 TIGR01628 PABP-1234 polyadenyl 99.3 2.4E-11 5.1E-16 123.0 10.9 79 3-85 1-82 (562)
27 TIGR01622 SF-CC1 splicing fact 99.2 2.7E-11 5.9E-16 118.8 10.0 77 3-83 187-266 (457)
28 KOG0122 Translation initiation 99.2 3.2E-11 6.9E-16 111.6 8.7 77 2-82 189-268 (270)
29 KOG0117 Heterogeneous nuclear 99.2 7.1E-11 1.5E-15 116.6 7.9 74 3-79 84-160 (506)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 3.1E-10 6.6E-15 116.8 9.9 74 3-83 234-307 (578)
31 smart00361 RRM_1 RNA recogniti 99.1 3E-10 6.5E-15 85.4 7.3 59 16-78 2-70 (70)
32 KOG4207 Predicted splicing fac 99.1 1.4E-10 2.9E-15 105.6 5.8 77 3-83 14-93 (256)
33 KOG0108 mRNA cleavage and poly 99.1 2.3E-10 5E-15 114.1 8.0 78 3-84 19-99 (435)
34 KOG0131 Splicing factor 3b, su 99.0 3.1E-10 6.6E-15 101.4 6.3 79 2-84 9-90 (203)
35 KOG0111 Cyclophilin-type pepti 99.0 1.7E-10 3.7E-15 105.9 4.4 79 3-85 11-92 (298)
36 KOG0107 Alternative splicing f 99.0 6.6E-10 1.4E-14 98.8 7.7 78 1-84 9-86 (195)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.0 5E-10 1.1E-14 111.2 7.7 74 2-80 175-257 (509)
38 KOG0148 Apoptosis-promoting RN 99.0 8E-10 1.7E-14 103.8 6.4 77 5-85 65-144 (321)
39 KOG0105 Alternative splicing f 99.0 1E-09 2.2E-14 98.6 6.4 77 2-82 6-82 (241)
40 KOG0148 Apoptosis-promoting RN 98.9 2.3E-09 5.1E-14 100.7 7.6 74 3-83 165-238 (321)
41 KOG0127 Nucleolar protein fibr 98.9 1.6E-09 3.6E-14 109.3 6.9 130 3-137 6-163 (678)
42 KOG0109 RNA-binding protein LA 98.9 1.4E-09 3E-14 103.1 6.0 74 1-83 1-74 (346)
43 KOG0123 Polyadenylate-binding 98.9 3.4E-09 7.4E-14 103.9 7.7 119 5-129 79-201 (369)
44 PF13893 RRM_5: RNA recognitio 98.9 9.6E-09 2.1E-13 73.4 7.9 56 19-80 1-56 (56)
45 KOG0113 U1 small nuclear ribon 98.9 7E-09 1.5E-13 98.5 8.0 79 3-85 102-183 (335)
46 KOG4212 RNA-binding protein hn 98.8 7.4E-09 1.6E-13 102.6 8.2 77 4-83 46-124 (608)
47 KOG0127 Nucleolar protein fibr 98.8 8.2E-09 1.8E-13 104.4 8.2 78 2-82 292-377 (678)
48 KOG0144 RNA-binding protein CU 98.8 3.9E-09 8.5E-14 104.2 5.3 124 4-140 36-172 (510)
49 KOG0145 RNA-binding protein EL 98.8 2.5E-08 5.4E-13 93.7 8.5 72 4-79 280-354 (360)
50 KOG4205 RNA-binding protein mu 98.7 1.4E-08 3E-13 97.6 6.0 78 2-84 6-86 (311)
51 KOG0145 RNA-binding protein EL 98.7 3.4E-08 7.4E-13 92.8 8.3 75 4-82 43-120 (360)
52 KOG4208 Nucleolar RNA-binding 98.7 3.1E-08 6.7E-13 90.0 7.5 76 5-83 52-130 (214)
53 KOG0114 Predicted RNA-binding 98.7 7.1E-08 1.5E-12 79.8 8.3 73 3-79 19-91 (124)
54 KOG0126 Predicted RNA-binding 98.7 2.5E-09 5.4E-14 95.8 -0.6 95 2-106 35-132 (219)
55 KOG0121 Nuclear cap-binding pr 98.7 5.4E-08 1.2E-12 83.1 6.9 74 2-79 36-112 (153)
56 KOG4205 RNA-binding protein mu 98.7 2.2E-08 4.8E-13 96.2 4.9 79 2-85 97-178 (311)
57 KOG0144 RNA-binding protein CU 98.6 2.3E-08 5E-13 98.9 4.8 79 3-84 125-207 (510)
58 KOG0117 Heterogeneous nuclear 98.6 9.7E-08 2.1E-12 94.8 7.6 72 3-83 260-331 (506)
59 KOG0130 RNA-binding protein RB 98.5 1.1E-07 2.4E-12 82.0 5.7 76 4-83 74-152 (170)
60 KOG0147 Transcriptional coacti 98.5 8.6E-08 1.9E-12 96.9 5.4 77 5-85 281-360 (549)
61 KOG0146 RNA-binding protein ET 98.5 1.4E-07 2.9E-12 89.1 5.5 79 3-85 286-367 (371)
62 KOG0110 RNA-binding protein (R 98.5 2.4E-07 5.3E-12 96.0 7.6 73 5-81 518-596 (725)
63 KOG0109 RNA-binding protein LA 98.5 1.2E-07 2.6E-12 90.1 4.9 74 2-84 78-151 (346)
64 KOG0124 Polypyrimidine tract-b 98.5 1.6E-07 3.5E-12 91.6 5.1 73 3-79 114-189 (544)
65 KOG0153 Predicted RNA-binding 98.4 3.8E-07 8.2E-12 88.3 7.0 74 3-82 229-302 (377)
66 KOG0124 Polypyrimidine tract-b 98.4 4.2E-07 9.1E-12 88.8 7.1 77 3-83 211-290 (544)
67 KOG4661 Hsp27-ERE-TATA-binding 98.4 6E-07 1.3E-11 91.6 7.3 80 2-85 405-487 (940)
68 KOG0132 RNA polymerase II C-te 98.4 6.9E-07 1.5E-11 93.5 7.3 71 2-79 421-491 (894)
69 KOG4206 Spliceosomal protein s 98.4 1E-06 2.2E-11 80.9 7.4 76 4-83 11-90 (221)
70 KOG0123 Polyadenylate-binding 98.3 7.8E-07 1.7E-11 87.4 5.5 79 3-85 271-351 (369)
71 KOG0116 RasGAP SH3 binding pro 98.3 1.3E-06 2.8E-11 87.1 6.6 78 2-84 288-368 (419)
72 KOG4454 RNA binding protein (R 98.2 5.7E-07 1.2E-11 82.8 1.9 74 1-79 8-83 (267)
73 KOG4209 Splicing factor RNPS1, 98.2 2.8E-06 6.1E-11 78.7 6.1 78 3-85 102-182 (231)
74 KOG0533 RRM motif-containing p 98.2 6.4E-06 1.4E-10 76.9 8.5 79 3-85 84-164 (243)
75 KOG4211 Splicing factor hnRNP- 98.1 6.4E-06 1.4E-10 82.8 8.1 74 4-83 12-86 (510)
76 KOG0110 RNA-binding protein (R 98.0 6.4E-06 1.4E-10 85.7 5.4 78 3-84 614-694 (725)
77 KOG0131 Splicing factor 3b, su 98.0 8.5E-06 1.8E-10 73.2 5.3 77 2-82 96-176 (203)
78 KOG0106 Alternative splicing f 97.9 8.2E-06 1.8E-10 75.0 3.8 70 3-81 2-71 (216)
79 KOG4212 RNA-binding protein hn 97.9 2.9E-05 6.2E-10 77.6 6.6 70 3-78 537-606 (608)
80 PF00098 zf-CCHC: Zinc knuckle 97.7 1E-05 2.2E-10 46.8 0.8 18 275-292 1-18 (18)
81 KOG0146 RNA-binding protein ET 97.7 5.5E-05 1.2E-09 71.8 5.7 80 3-85 20-103 (371)
82 KOG0415 Predicted peptidyl pro 97.6 7E-05 1.5E-09 73.3 5.5 71 4-78 241-314 (479)
83 KOG1457 RNA binding protein (c 97.6 0.00023 5.1E-09 66.1 8.3 79 3-85 35-120 (284)
84 KOG4211 Splicing factor hnRNP- 97.5 0.00021 4.6E-09 72.1 6.5 73 4-81 105-180 (510)
85 KOG0151 Predicted splicing reg 97.4 0.0004 8.7E-09 72.8 7.5 79 1-83 173-257 (877)
86 KOG4660 Protein Mei2, essentia 97.3 0.00016 3.5E-09 73.7 3.9 68 3-76 76-143 (549)
87 KOG1190 Polypyrimidine tract-b 97.2 0.0019 4.1E-08 64.4 9.7 125 4-134 299-454 (492)
88 KOG0129 Predicted RNA-binding 97.2 0.00094 2E-08 67.9 7.6 61 2-64 370-433 (520)
89 PF04059 RRM_2: RNA recognitio 97.1 0.0018 3.9E-08 52.7 7.3 64 3-67 2-68 (97)
90 KOG1548 Transcription elongati 97.1 0.0018 4E-08 63.2 8.0 76 3-82 135-220 (382)
91 KOG0147 Transcriptional coacti 97.0 0.00023 5E-09 72.6 1.3 117 3-129 180-314 (549)
92 KOG4210 Nuclear localization s 97.0 0.00047 1E-08 65.8 3.0 77 3-84 185-265 (285)
93 PF11608 Limkain-b1: Limkain b 97.0 0.0051 1.1E-07 49.3 8.2 67 4-80 4-74 (90)
94 KOG0226 RNA-binding proteins [ 96.9 0.0008 1.7E-08 63.4 4.0 72 4-79 192-266 (290)
95 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0023 4.9E-08 46.3 5.5 53 2-61 1-53 (53)
96 PF08777 RRM_3: RNA binding mo 96.9 0.004 8.6E-08 51.1 7.0 70 3-78 2-75 (105)
97 KOG0120 Splicing factor U2AF, 96.8 0.001 2.2E-08 67.9 3.6 77 4-84 291-370 (500)
98 KOG0106 Alternative splicing f 96.8 0.0009 2E-08 61.7 2.8 66 4-78 101-166 (216)
99 KOG1995 Conserved Zn-finger pr 96.6 0.002 4.3E-08 63.0 4.3 78 3-84 67-155 (351)
100 PF13696 zf-CCHC_2: Zinc knuck 96.6 0.0012 2.5E-08 43.7 1.5 24 269-292 3-26 (32)
101 KOG1190 Polypyrimidine tract-b 96.4 0.0073 1.6E-07 60.3 6.5 78 2-83 414-491 (492)
102 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.033 7.2E-07 45.6 7.2 70 4-79 8-88 (100)
103 KOG1365 RNA-binding protein Fu 95.8 0.012 2.6E-07 58.5 5.0 72 4-77 163-237 (508)
104 KOG4206 Spliceosomal protein s 95.8 0.032 6.9E-07 51.7 7.1 59 3-66 147-205 (221)
105 KOG0105 Alternative splicing f 95.7 0.046 1E-06 49.9 7.8 73 4-83 117-192 (241)
106 KOG0129 Predicted RNA-binding 95.7 0.024 5.3E-07 57.9 6.7 70 2-79 259-339 (520)
107 KOG1548 Transcription elongati 95.6 0.03 6.6E-07 54.9 6.8 60 18-82 292-351 (382)
108 KOG1365 RNA-binding protein Fu 95.4 0.017 3.6E-07 57.6 4.3 75 5-82 283-361 (508)
109 KOG1457 RNA binding protein (c 95.4 0.015 3.2E-07 54.3 3.8 59 3-65 211-269 (284)
110 KOG4676 Splicing factor, argin 94.9 0.032 7E-07 55.6 4.6 77 4-85 9-91 (479)
111 KOG2202 U2 snRNP splicing fact 94.8 0.016 3.6E-07 54.6 2.2 62 17-82 83-147 (260)
112 COG5175 MOT2 Transcriptional r 94.6 0.082 1.8E-06 52.1 6.5 73 5-82 117-202 (480)
113 KOG4307 RNA binding protein RB 94.6 0.085 1.8E-06 56.0 6.8 72 4-78 869-942 (944)
114 KOG4849 mRNA cleavage factor I 94.0 0.043 9.3E-07 54.2 3.2 73 5-79 83-158 (498)
115 KOG1855 Predicted RNA-binding 93.4 0.089 1.9E-06 53.0 4.1 61 2-65 231-307 (484)
116 KOG3152 TBP-binding protein, a 93.1 0.064 1.4E-06 50.8 2.5 75 5-85 77-166 (278)
117 KOG4307 RNA binding protein RB 93.0 0.13 2.8E-06 54.7 4.7 70 1-77 1-71 (944)
118 smart00343 ZnF_C2HC zinc finge 93.0 0.04 8.7E-07 33.9 0.7 18 276-293 1-18 (26)
119 KOG0120 Splicing factor U2AF, 92.5 0.31 6.7E-06 50.2 6.7 58 27-85 431-494 (500)
120 KOG1996 mRNA splicing factor [ 91.4 0.47 1E-05 46.1 6.1 62 16-81 300-365 (378)
121 PF08952 DUF1866: Domain of un 90.5 0.99 2.1E-05 39.5 6.8 58 18-85 52-109 (146)
122 KOG2314 Translation initiation 90.3 0.46 9.9E-06 49.6 5.3 74 5-81 61-142 (698)
123 PF10309 DUF2414: Protein of u 90.0 1.4 3E-05 33.2 6.4 56 4-64 7-62 (62)
124 KOG1456 Heterogeneous nuclear 89.6 1.8 3.9E-05 43.4 8.6 121 4-137 289-412 (494)
125 KOG0128 RNA-binding protein SA 89.6 0.16 3.4E-06 54.8 1.4 72 4-79 738-811 (881)
126 KOG0115 RNA-binding protein p5 89.1 0.47 1E-05 45.1 4.0 77 1-80 30-111 (275)
127 KOG0128 RNA-binding protein SA 88.4 0.053 1.1E-06 58.3 -3.1 59 4-65 669-730 (881)
128 KOG4210 Nuclear localization s 87.5 0.48 1E-05 45.4 3.1 60 3-65 89-151 (285)
129 PF14392 zf-CCHC_4: Zinc knuck 87.0 0.21 4.5E-06 35.4 0.2 21 272-292 29-49 (49)
130 KOG2193 IGF-II mRNA-binding pr 86.2 0.85 1.9E-05 46.3 4.0 68 3-79 2-72 (584)
131 KOG0112 Large RNA-binding prot 83.6 0.29 6.3E-06 53.2 -0.6 61 2-65 372-434 (975)
132 KOG2253 U1 snRNP complex, subu 81.4 0.95 2.1E-05 47.9 2.2 73 1-83 39-111 (668)
133 COG5082 AIR1 Arginine methyltr 81.3 0.66 1.4E-05 42.2 0.9 20 272-291 58-77 (190)
134 PTZ00368 universal minicircle 81.1 0.82 1.8E-05 39.0 1.4 21 272-292 127-147 (148)
135 PF03880 DbpA: DbpA RNA bindin 80.7 6.9 0.00015 29.6 6.3 62 12-80 11-74 (74)
136 COG5222 Uncharacterized conser 79.2 0.9 1.9E-05 44.3 1.1 21 272-292 174-194 (427)
137 PF13917 zf-CCHC_3: Zinc knuck 77.5 1.2 2.6E-05 31.1 1.1 20 273-292 3-22 (42)
138 PF07292 NID: Nmi/IFP 35 domai 74.4 9 0.00019 30.8 5.5 58 47-117 1-58 (88)
139 KOG2416 Acinus (induces apopto 74.4 2.9 6.3E-05 44.1 3.3 77 2-83 444-522 (718)
140 KOG1456 Heterogeneous nuclear 73.5 8.5 0.00018 38.8 6.1 75 4-84 33-109 (494)
141 PF02714 DUF221: Domain of unk 73.3 3.9 8.4E-05 38.7 3.7 33 47-82 1-33 (325)
142 PF15288 zf-CCHC_6: Zinc knuck 72.5 1.8 3.9E-05 30.1 0.9 20 275-294 2-23 (40)
143 PF07576 BRAP2: BRCA1-associat 72.0 24 0.00053 29.3 7.7 61 4-66 15-76 (110)
144 KOG0112 Large RNA-binding prot 71.6 9 0.0002 42.2 6.3 102 3-111 456-563 (975)
145 PF14787 zf-CCHC_5: GAG-polypr 67.4 2.2 4.8E-05 29.0 0.5 19 274-292 2-20 (36)
146 COG5082 AIR1 Arginine methyltr 64.7 2.8 6.1E-05 38.2 0.8 17 275-291 98-114 (190)
147 COG5179 TAF1 Transcription ini 63.1 3 6.5E-05 44.4 0.7 21 274-294 937-959 (968)
148 KOG4660 Protein Mei2, essentia 62.6 11 0.00024 39.4 4.6 65 5-71 391-460 (549)
149 KOG2135 Proteins containing th 58.9 4.6 0.0001 41.5 1.2 60 15-82 386-445 (526)
150 KOG2068 MOT2 transcription fac 58.7 5.8 0.00013 39.0 1.8 75 5-83 80-163 (327)
151 PTZ00368 universal minicircle 58.5 5.6 0.00012 33.8 1.5 20 274-293 52-71 (148)
152 KOG0314 Predicted E3 ubiquitin 58.1 7 0.00015 40.0 2.3 55 245-299 129-183 (448)
153 KOG4574 RNA-binding protein (c 57.7 7 0.00015 42.9 2.3 76 4-85 300-376 (1007)
154 KOG2591 c-Mpl binding protein, 54.9 20 0.00043 37.9 4.9 74 5-83 178-252 (684)
155 KOG4400 E3 ubiquitin ligase in 53.6 7.1 0.00015 36.4 1.4 17 275-291 144-160 (261)
156 PF15023 DUF4523: Protein of u 52.3 32 0.00069 30.6 5.1 55 4-65 88-146 (166)
157 PF04847 Calcipressin: Calcipr 50.7 46 0.00099 30.1 6.1 62 15-82 8-70 (184)
158 PF05310 Tenui_NS3: Tenuivirus 47.8 6.3 0.00014 35.8 0.1 25 269-293 93-117 (186)
159 KOG4410 5-formyltetrahydrofola 46.8 12 0.00027 36.5 1.9 50 4-59 332-382 (396)
160 PF06880 DUF1262: Protein of u 43.8 38 0.00083 28.2 4.1 38 243-280 60-104 (104)
161 PF03467 Smg4_UPF3: Smg-4/UPF3 43.7 23 0.0005 31.5 3.0 61 4-66 9-77 (176)
162 PF04896 AmoC: Ammonia monooxy 42.8 6.7 0.00014 37.1 -0.6 12 188-199 134-145 (251)
163 TIGR03078 CH4_NH3mon_ox_C meth 42.3 9.4 0.0002 35.5 0.3 14 187-200 121-134 (229)
164 PF03468 XS: XS domain; Inter 35.9 38 0.00081 28.3 3.0 50 4-57 10-69 (116)
165 PF07292 NID: Nmi/IFP 35 domai 35.1 19 0.00041 28.9 1.0 23 2-24 52-74 (88)
166 PF08675 RNA_bind: RNA binding 35.0 1.8E+02 0.0039 23.5 6.5 51 6-65 13-63 (87)
167 PF12353 eIF3g: Eukaryotic tra 34.1 23 0.00049 30.2 1.4 25 267-292 99-123 (128)
168 KOG3563 Forkhead/HNF-3-related 34.1 15 0.00034 36.8 0.4 78 198-279 185-263 (454)
169 COG5193 LHP1 La protein, small 33.8 17 0.00036 36.9 0.6 62 1-63 173-245 (438)
170 CHL00123 rps6 ribosomal protei 32.8 85 0.0018 25.2 4.5 54 10-63 14-81 (97)
171 PRK08559 nusG transcription an 32.0 2.8E+02 0.0061 23.9 7.9 48 16-66 18-68 (153)
172 KOG4400 E3 ubiquitin ligase in 30.5 24 0.00051 32.9 1.0 21 273-293 163-183 (261)
173 PRK11558 putative ssRNA endonu 29.0 1E+02 0.0023 25.2 4.4 63 3-77 28-90 (97)
174 KOG2318 Uncharacterized conser 28.5 2.4E+02 0.0052 30.3 7.8 83 2-85 174-310 (650)
175 KOG4483 Uncharacterized conser 28.3 1.2E+02 0.0027 31.1 5.5 53 5-63 394-446 (528)
176 COG0724 RNA-binding proteins ( 25.9 80 0.0017 26.8 3.4 37 3-42 226-262 (306)
177 COG2608 CopZ Copper chaperone 25.0 2E+02 0.0043 21.5 5.1 57 1-63 2-59 (71)
178 KOG4285 Mitotic phosphoprotein 24.8 2.3E+02 0.0051 28.0 6.6 66 5-79 200-266 (350)
179 KOG0341 DEAD-box protein abstr 24.1 37 0.0008 34.9 1.1 24 273-296 569-592 (610)
180 PF12499 DUF3707: Pherophorin 24.0 2.6E+02 0.0056 22.9 6.1 31 187-219 96-128 (144)
181 COG5594 Uncharacterized integr 23.3 87 0.0019 34.6 3.7 42 44-85 357-398 (827)
182 KOG2193 IGF-II mRNA-binding pr 22.2 7.4 0.00016 39.8 -4.2 78 2-83 80-157 (584)
183 PF15513 DUF4651: Domain of un 21.0 1.6E+02 0.0035 22.3 3.8 19 17-38 9-27 (62)
184 TIGR03636 L23_arch archaeal ri 20.6 2.9E+02 0.0063 21.5 5.3 60 4-64 15-74 (77)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=7.1e-16 Score=132.19 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=74.0
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
++.+|||+|||+.+|++||+++|+++ |+|.+++|+.|+. +||||||+|+++++|+.|++.+++ ..++|+.|+|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~---G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng-~~i~Gr~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHF---GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG-KELNGRHIRV 108 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC---CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEE
Confidence 46789999999999999999999999 9999999999875 899999999999999999999874 5899999999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
..+.....
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 98876543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.55 E-value=1.6e-14 Score=136.51 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+.+++++|+++|+.| |.|.+|+|+.|+. |||||||+|++.++|..||+.+|+ ..++||.|+|.-
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~f---G~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG-~~~~gr~i~V~~ 345 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPF---GAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG-YTLGNRVLQVSF 345 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhC---CCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEE
Confidence 469999999999999999999999 9999999999974 999999999999999999999974 789999999987
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+..
T Consensus 346 ~~~ 348 (352)
T TIGR01661 346 KTN 348 (352)
T ss_pred ccC
Confidence 544
No 3
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=2.4e-14 Score=133.76 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=70.8
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|.++|||||||+.+|++||++||+.+ |+|.+++|..|+.+||||||+|+++++|+.|+. ++ +..++|+.|+|+++
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~---G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-Ln-G~~l~gr~V~Vt~a 77 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFS---GDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LS-GATIVDQSVTITPA 77 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc---CCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hc-CCeeCCceEEEEec
Confidence 56899999999999999999999998 999999999998889999999999999999996 54 46889999999997
Q ss_pred CC
Q 022209 81 QR 82 (301)
Q Consensus 81 ~~ 82 (301)
+.
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 63
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.2e-14 Score=104.18 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=62.9
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
|||+|||..+|+++|+++|+++ |.|..+++..+.. ++|+|||+|++.++|+.|++.+++ ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g-~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF---GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG-KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT---STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHh---hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC-CEECccCcC
Confidence 7999999999999999999999 9999999998633 889999999999999999999874 789999886
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.2e-13 Score=130.54 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=78.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+.+|++||+++|+++ |+|.+|+|+.|+. |||||||+|.++++|+.||+.++ +..++|+.|+|..
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~---G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~-g~~l~g~~i~v~~ 79 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSI---GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN-GLRLQNKTIKVSY 79 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHcc---CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc-cEEECCeeEEEEe
Confidence 579999999999999999999999 9999999998864 99999999999999999999997 4789999999986
Q ss_pred CCCCCCCCCCCCCCCCccCCCceEEecccccC
Q 022209 80 AQRRTPHYAKRGIPHYQLGDDLKLNFGCHISK 111 (301)
Q Consensus 80 a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs~ 111 (301)
+.... ..+ .+..|.+|.+...
T Consensus 80 a~~~~----------~~~-~~~~l~v~~l~~~ 100 (352)
T TIGR01661 80 ARPSS----------DSI-KGANLYVSGLPKT 100 (352)
T ss_pred ecccc----------ccc-ccceEEECCcccc
Confidence 54321 123 4456777766433
No 6
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=8.5e-14 Score=127.80 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=72.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+||||||+|.+..++|++|||+| |+|..+.|++|+. |||||||+|.+.|+|++|....| -.++||.-+++.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqf---GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--piIdGR~aNcnl 87 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQF---GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PIIDGRKANCNL 87 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHh---CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Ccccccccccch
Confidence 369999999999999999999999 9999999999997 99999999999999999998876 578999888888
Q ss_pred CCCCCCCCCCCC
Q 022209 80 AQRRTPHYAKRG 91 (301)
Q Consensus 80 a~~di~~~pRp~ 91 (301)
|.---. |||.
T Consensus 88 A~lg~~--pR~~ 97 (247)
T KOG0149|consen 88 ASLGGK--PRPV 97 (247)
T ss_pred hhhcCc--cCCC
Confidence 776443 5553
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=2.1e-13 Score=100.70 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=61.6
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
|+|+|||++++++||.++|+.+ |.|..+++..++. +||+|||+|.++++|+.|++..+ +..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~---g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~-~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF---GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN-GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS---SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT-TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc---CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC-CcEECCEEcC
Confidence 7999999999999999999999 9999999998875 88999999999999999999986 5789999885
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.44 E-value=3.2e-13 Score=130.87 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=69.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||+++|+++|+++|+.+ |.|.+|+|+.|+. +||||||+|+++++|+.||+.++ +..+.++.|+|..
T Consensus 108 ~~LfVgnLp~~~te~~L~~lF~~~---G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln-G~~l~gr~i~V~~ 183 (346)
T TIGR01659 108 TNLIVNYLPQDMTDRELYALFRTI---GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN-GITVRNKRLKVSY 183 (346)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC-CCccCCceeeeec
Confidence 589999999999999999999998 9999999998865 99999999999999999999987 4688999999987
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 654
No 9
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=4.2e-13 Score=133.73 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=71.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCH--HHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTV--KAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~--eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+++||||||++.++++||.+.|.+| |+|.+|+|+... .||||||+|.++ +++++||+.+| +..+.||.|+|+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeF---GsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLN-GAEWKGR~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPM---GTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYN-GCVWKGGRLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhc-CCeecCceeEEee
Confidence 4689999999999999999999999 999999999333 699999999988 78999999997 4689999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|++...
T Consensus 85 AKP~YL 90 (759)
T PLN03213 85 AKEHYL 90 (759)
T ss_pred ccHHHH
Confidence 988544
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.2e-12 Score=91.66 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=64.7
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+|+|+|||..++++||+++|+++ |.|..+++..+.. ++|+|||+|.+.++|+.|++.+++ ..++|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~---g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~-~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF---GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNG-TKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc---CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCC-cEECCEEEeeC
Confidence 68999999999999999999999 9999999997765 889999999999999999998864 67889998874
No 11
>KOG0988 consensus RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification]
Probab=99.39 E-value=9.2e-14 Score=148.45 Aligned_cols=243 Identities=16% Similarity=0.141 Sum_probs=168.9
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccccee-EEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSY-LKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~-LkV 77 (301)
..++-+++||.+.++.+|.+|.|..+|.++|+..++-+++. .+-|+.++|.+.+.--.++..+...+.|+..+ ++.
T Consensus 10 ~~~~~~~~f~e~~~~~~~~~f~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~l~~~~~~~~~a~v~f~~~~~~~~ 89 (1145)
T KOG0988|consen 10 VEEQDCNGFPESNSAVELGDFLELLIGAITVYLLKMNTTKPYRPNRVYHGSDFTSIALDCSGIETPLAKVYFKHNQGLNP 89 (1145)
T ss_pred eeeeeccCcccchhHHHhhhHHHHHhcchHHHHHhcCCCCCCCCccccccccccccccccccchhhHHHHhhccCCCCCc
Confidence 45788999999999999999999999999999888887765 66889999988765544444332223333333 666
Q ss_pred ecCCC--CCCCCCCCCCCCCccCCCceEEecccccC---CeeEEEeec---cceeeEEecCceeEEEEEEecc-eeeEEe
Q 022209 78 SDAQR--RTPHYAKRGIPHYQLGDDLKLNFGCHISK---DKFSVLWSQ---ENVSVKLCSDIRKFEFFLSYES-VDYKLE 148 (301)
Q Consensus 78 ~~a~~--di~~~pRp~~~~~r~~~~~~l~~G~~vs~---~~f~v~w~~---~~V~~~~~~~~rkl~F~~s~~~-~~yKLE 148 (301)
.++.. +++ +.+...+..+ ..+++++++.-.. -.|..||++ ..|.|...+.++.+.+.+.... -++..|
T Consensus 90 ~e~~~~~~~l--~~~a~~~~~l-~~i~~~~~F~~~~~~t~~~~~~~~~~v~~~v~V~~~~~~~~~~~p~~~~~~~~v~f~ 166 (1145)
T KOG0988|consen 90 WEVETSRRIL--SSLAVIRESL-NQIVLEKVFDKPDGITKTFDCLESYKVNDQVTVRGSPVRRIVESPVVEYCKLCVPFE 166 (1145)
T ss_pred cchhhhhhhc--cccccchHHH-hhHHHhhccCcccceeeeecceEEEeecceEEEeccceeeeeecccccccccccchh
Confidence 66655 444 5544345555 5566666554333 356667777 7777778888888887765533 355555
Q ss_pred eeecceeeeeeeCCCCCC-------------ceEEEEEeecCCeeEEecCC-------------eeeecccCcCCccccc
Q 022209 149 LSYESIWQIELHRPRGHP-------------AKYLVIQLYGVPMIYENEIH-------------RVREVDFAPSSSIEQS 202 (301)
Q Consensus 149 ~~~e~I~ei~~~~~~~~~-------------~~~LLlql~~aP~Iy~r~~~-------------WiRttDFTps~sIG~s 202 (301)
.+++.+-+..-+..+... ..-+.+|.+..|.++...++ |||||||+++.+||++
T Consensus 167 ~~~~~~i~~~~~D~~~~s~~~~~~~~~~~~~G~~k~~~~~~~p~~~~~~~~~~Ef~k~~~~~~~~i~~~~~~~~~~v~~e 246 (1145)
T KOG0988|consen 167 HSCRVLIETVSLDLDKPSIIRYPKSRRYLDNGGSKYFRFAFSPLLLALGDSELEFKKDFLADLLYIRTTDLRSRTGVGIE 246 (1145)
T ss_pred hcchhheeeEEeccCcchhccCcchhhhhhcCccceeecccccHHHhhccceeeeecccccccceeeecceeccccccce
Confidence 555555543322222211 12345667777777766633 9999999999999999
Q ss_pred ceEEEEeCCCCCCcchhhhhhccccc-------CceeEEeCCCcee-cCCceeeeeeC
Q 022209 203 SDICLELPSRAHIPKALKDFFYYKES-------PVQFTLVPGSVFS-CNSDLVHMTHG 252 (301)
Q Consensus 203 ~~~cle~~~~~~~~~~~~~~~yy~e~-------~~~~~l~~g~~f~-~~s~lVPlv~~ 252 (301)
+++|+||+.. +.+++||++++ +..+.+..|..|+ ++..+|||++-
T Consensus 247 ta~~~eI~~~-----i~~~lP~~r~~~~~~~~~~~s~~ir~~~~~~~~~~~~~~l~~~ 299 (1145)
T KOG0988|consen 247 TASCDEIRVP-----IWKDLPYNRYNGSTAEEFRLSVWIRLGSKYDVSSAQLVPLNDE 299 (1145)
T ss_pred eeccceecch-----hhccCCcccccccchhhhhhhhheecccccccccceeeecccc
Confidence 9999999986 56778887775 3367778999887 67779999983
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=3.3e-12 Score=131.73 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=69.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||||||+.+++++|+++|+.| |.|.+|+|+.|+. +||||||+|++.++|+.|++.+| +..++||.|+|+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~f---G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln-G~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN-GQMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcc---CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC-CeEEecceeeec
Confidence 4689999999999999999999999 9999999998865 99999999999999999999997 578999999998
Q ss_pred cC
Q 022209 79 DA 80 (301)
Q Consensus 79 ~a 80 (301)
..
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 53
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.36 E-value=2.4e-12 Score=132.76 Aligned_cols=79 Identities=11% Similarity=0.285 Sum_probs=73.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||..+++++|+++|+.| |.|.+|+|..|.. +||||||+|++.++|+.||+.+| ++.++|+.|+|..
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~F---G~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-g~elgGr~LrV~k 280 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-LFDLGGQYLRVGK 280 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhc---CCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-CCeeCCeEEEEEe
Confidence 589999999999999999999999 9999999999865 89999999999999999999997 5799999999998
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+..++.
T Consensus 281 Ai~pP~ 286 (612)
T TIGR01645 281 CVTPPD 286 (612)
T ss_pred cCCCcc
Confidence 776554
No 14
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=4.8e-12 Score=89.39 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=61.8
Q ss_pred EeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 7 LYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 7 Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
|+|||+.++++||+++|+++ |.|..+++..++. ++|+|||+|.+.++|+.|++.++ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~---g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF---GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh---CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-CCeeCCcEEEeC
Confidence 68999999999999999998 9999999998764 89999999999999999999987 467789998874
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=4.1e-12 Score=123.20 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=69.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCc-cccceeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRL-SYGNSYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l-~~~gr~LkV~ 78 (301)
.+|||+|||+++|++||+++|++| |.|.+++|+.|+. +||||||+|++.++|++||+.+++.. .-.++.|+|.
T Consensus 194 ~~lfV~nLp~~vtee~L~~~F~~f---G~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 194 TNLYVTNLPRTITDDQLDTIFGKY---GQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ceeEEeCCCCcccHHHHHHHHHhc---CCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 479999999999999999999999 9999999998874 89999999999999999999998532 2344799999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.|+...
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 877654
No 16
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=4.4e-12 Score=117.42 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=68.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
.||+|+||++.+|++||++||+.+ |+|.+|+|+.|.+++|||||+|.++++|+.|+.+- +..+.++.|.|.+...
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~---G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLn--Ga~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHC---GAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLS--GATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhc---CCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcC--CCeeCCceEEEEeCcc
Confidence 479999999999999999999998 99999999999888899999999999999999663 4678999999998665
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.32 E-value=8.9e-12 Score=124.78 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=70.0
Q ss_pred CceEEEeCCCc-cccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 2 AKKISLYGFAS-HVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~-~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
+.+|||+|||+ .+|+++|+++|+.| |.|.+|+|+.+ +||||||+|++.++|+.||..+++ ..++|+.|+|+.+
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~y---G~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng-~~l~g~~l~v~~s 348 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVY---GNVERVKFMKN--KKETALIEMADPYQAQLALTHLNG-VKLFGKPLRVCPS 348 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhc---CCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEEc
Confidence 35899999998 69999999999999 99999999876 479999999999999999999975 5789999999987
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
....+
T Consensus 349 ~~~~~ 353 (481)
T TIGR01649 349 KQQNV 353 (481)
T ss_pred ccccc
Confidence 66543
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3.6e-12 Score=121.83 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=83.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
|+|+|+|||+..-+-||+..||+| |.|.+|||+...+ |+|||||+|+++++|++|-+++++ -.+.||.|.|+-|-
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kf---G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHg-t~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKF---GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHG-TVVEGRKIEVNNAT 172 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhh---CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhc-ceeeceEEEEeccc
Confidence 689999999999999999999999 9999999997654 999999999999999999999974 58899999999988
Q ss_pred CCCCCCCCCCCCCCccCCCceEEecccccCC
Q 022209 82 RRTPHYAKRGIPHYQLGDDLKLNFGCHISKD 112 (301)
Q Consensus 82 ~di~~~pRp~~~~~r~~~~~~l~~G~~vs~~ 112 (301)
.++-+ ++-...++-.+-+.-+-.|.+++.+
T Consensus 173 arV~n-~K~~v~p~~~g~~~~~a~~al~~~e 202 (376)
T KOG0125|consen 173 ARVHN-KKKKVLPYPNGWKLLPAVGALYSAE 202 (376)
T ss_pred hhhcc-CCcccCCCccccccccchhhhhchh
Confidence 77543 3332233322133344455555554
No 19
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.31 E-value=8.8e-12 Score=107.68 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=71.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||||||+.+|+++|.++|.++ |.|.++.|..|+. +||||||+|.++++|..|+..++ +..+.|+.|.|..
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~---g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-~~~~~~~~~~v~~ 191 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKF---GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-GKELEGRPLRVQK 191 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-CCeECCceeEeec
Confidence 689999999999999999999999 9999999999973 99999999999999999999997 5799999999998
Q ss_pred CCC
Q 022209 80 AQR 82 (301)
Q Consensus 80 a~~ 82 (301)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.31 E-value=1.3e-11 Score=121.00 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=69.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.+||||+|||+.+++++|+++|+++ |.|.+|+|+.|+. +||||||+|.+.++|++||.+. +..+.|+.|.|.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~---G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~--g~~~~g~~i~v~ 163 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKV---GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALT--GQMLLGRPIIVQ 163 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhC--CCEECCeeeEEe
Confidence 4689999999999999999999998 9999999999865 8999999999999999999853 468899999998
Q ss_pred cCCCC
Q 022209 79 DAQRR 83 (301)
Q Consensus 79 ~a~~d 83 (301)
.+...
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 75543
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.30 E-value=1.3e-11 Score=123.52 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=70.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA 80 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a 80 (301)
+++|||+|||++++++||+++|+++ |+|.+|.|+. +||||||+|++.|+|+.|++.++ +...++|+.|+|..+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~f---G~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPF---GPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 6899999999999999999999999 9999999986 46999999999999999999864 567899999999988
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
...-+
T Consensus 76 ~~~~~ 80 (481)
T TIGR01649 76 TSQEI 80 (481)
T ss_pred CCccc
Confidence 76554
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.30 E-value=8e-12 Score=126.40 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.+|||+|||+++|+++|+++|++| |+|.+|+|+.|.+ +||||||+|++.++|++|+..+++ ..++|+.|.|..
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~---G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g-~~~~gk~l~V~~ 360 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSEC---GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG-RMLGGKPLYVAL 360 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhc---CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC-CeeCCceeEEEe
Confidence 3579999999999999999999999 9999999999865 999999999999999999999975 689999999998
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
|..+-
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 87643
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=8.8e-12 Score=128.00 Aligned_cols=74 Identities=12% Similarity=0.063 Sum_probs=65.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||||||+++++++|+++|+++ |.|.+++|+.|.+ |||||||+|++.|+|++||+.+|+.....|+.|.|..
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~---G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKA---GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhh---CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 589999999999999999999999 9999999999965 9999999999999999999999854334577776654
No 24
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=4.2e-11 Score=85.36 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=64.9
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+|+|+|||+.+++++|+++|+.+ |.|..+.+..+.. ++|+|+|+|.+.++|+.|++.+++ ..++|+.+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~---g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~-~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF---GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNG-KELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc---CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEe
Confidence 58999999999999999999998 9999999998775 789999999999999999999874 45889999876
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=1.7e-11 Score=121.74 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=70.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||||||+.+|+++|+++|+.| |.|..+.|+.+.. ++|||||+|++.++|+.||+.++ +..++|+.|+|..
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~---G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-g~~~~~~~l~v~~ 371 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESF---GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-GKDTGDNKLHVQR 371 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-CCEECCeEEEEEE
Confidence 579999999999999999999999 9999999998864 89999999999999999999997 4689999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 7654
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.26 E-value=2.4e-11 Score=123.00 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=71.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||||||.++|+++|.++|+++ |+|.+|+|..|.. |+|||||+|.+.++|++|++.+++ ..++|+.|+|..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~---G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~-~~i~gk~i~i~~ 76 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPF---GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF-KRLGGKPIRIMW 76 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhc---CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeeEEeec
Confidence 379999999999999999999999 9999999998864 889999999999999999999974 568999999988
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
+..+..
T Consensus 77 s~~~~~ 82 (562)
T TIGR01628 77 SQRDPS 82 (562)
T ss_pred cccccc
Confidence 766543
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=2.7e-11 Score=118.85 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=71.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||+|||..+|+++|+++|+.+ |.|..|.|..+.. +||||||+|.+.++|+.|+..+++ ..++|+.|+|..
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~---G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~i~g~~i~v~~ 262 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPF---GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG-FELAGRPIKVGY 262 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhc---CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC-cEECCEEEEEEE
Confidence 589999999999999999999999 9999999998875 899999999999999999999975 789999999999
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8743
No 28
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.2e-11 Score=111.63 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.||.|.|||.+++++||.++|-.+ |.|.++.|..|++ |||||||+|.+.++|++||+.+| +..|++--|+|.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~f---g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-G~gyd~LILrvE 264 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPF---GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-GYGYDNLILRVE 264 (270)
T ss_pred cceeEEecCccccChhHHHHHhhcc---CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-CcccceEEEEEE
Confidence 3579999999999999999999999 9999999999997 99999999999999999999997 468899999997
Q ss_pred cCCC
Q 022209 79 DAQR 82 (301)
Q Consensus 79 ~a~~ 82 (301)
=+.+
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 6543
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=7.1e-11 Score=116.64 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=68.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
--||||+||.++.++||..+||+. |.||.+||++|+. +||||||+|.+.++|+.||..+||.-.-.|+.|+|+-
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEki---G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKI---GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhc---cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 459999999999999999999998 9999999999975 9999999999999999999999875455899998875
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=3.1e-10 Score=116.76 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=66.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
++|||+|||+++|+++|+++|+++ +.|+|.+|+++ |+||||+|++.++|++|++.+|+ ..++|+.|+|+.|..
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f-~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG-~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEF-KPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNG-KELEGSEIEVTLAKP 306 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhc-CCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEccC
Confidence 579999999999999999999997 45899999875 68999999999999999999974 589999999998865
Q ss_pred C
Q 022209 83 R 83 (301)
Q Consensus 83 d 83 (301)
.
T Consensus 307 ~ 307 (578)
T TIGR01648 307 V 307 (578)
T ss_pred C
Confidence 4
No 31
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3e-10 Score=85.37 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHh----cCCCCceEEEEE-eecCC----C-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 16 ARAVKEFLE----GHTGEGTVSDVE-VGQNK----G-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 16 a~dLk~~Fe----~~~g~G~V~~~~-V~~dr----~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
++||+++|+ .| |+|.++. |..|+ . +||||||+|+++++|+.|+..+++ ..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~f---G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g-~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYF---GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG-RYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhc---CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEeC
Confidence 689999999 88 9999995 76665 2 899999999999999999999985 58999999874
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.08 E-value=1.4e-10 Score=105.61 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=70.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
-+|.|-||-+-+|+++|...||+| |.|-+|.|.-|+- |||||||.|-...+|+.|+++|+ +..++|+.|+|+.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekY---G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-G~~ldgRelrVq~ 89 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKY---GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-GAVLDGRELRVQM 89 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHh---CcccceecccccccccccceeEEEeeecchHHHHHHhhc-ceeeccceeeehh
Confidence 369999999999999999999999 9999999998875 99999999999999999999997 4689999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 7654
No 33
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.08 E-value=2.3e-10 Score=114.10 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=72.6
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
..|||||+|+++++++|.+.|++. |.|.+.+++.|++ +|||||++|++.+.|+.|++.+| +.+++||.|+|+-
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~---g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-g~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV---GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-GAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc---CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-CcccCCceEEeec
Confidence 579999999999999999999998 9999999999997 99999999999999999999997 5799999999987
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
+..+-
T Consensus 95 ~~~~~ 99 (435)
T KOG0108|consen 95 ASNRK 99 (435)
T ss_pred ccccc
Confidence 76654
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.04 E-value=3.1e-10 Score=101.40 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=72.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..||||||||..++++-|.++|-+. |.|.++++..|+- .+|||||+|.++|+|+-||..+| ..-+-||+|+|+
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqa---gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln-~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQA---GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILN-MVKLYGRPIRVN 84 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhc---CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHH-HHHhcCceeEEE
Confidence 3699999999999999999999997 9999999999986 88999999999999999999998 567899999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.+...-
T Consensus 85 kas~~~ 90 (203)
T KOG0131|consen 85 KASAHQ 90 (203)
T ss_pred eccccc
Confidence 988443
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.7e-10 Score=105.89 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=72.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+|||||||.-.|++.=|..-|=.+ |.|.++.+..|.+ .||||||+|+-.|+|.+||+.||+ .++-||.|+|+.
T Consensus 11 rtlYVGGladeVtekvLhaAFIPF---GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne-sEL~GrtirVN~ 86 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPF---GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE-SELFGRTIRVNL 86 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccc---cchhhcccccchhcccccceeEEEeeccchhHHHhhcCch-hhhcceeEEEee
Confidence 479999999999999999999999 9999999999986 899999999999999999999974 588999999999
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
|.+.-+
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 776544
No 36
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6.6e-10 Score=98.75 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|..+||||||+..++..||...|..| |.+..+=|.. .+-|||||+|+++-+|+.|+..+++ -.+.|..++|...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y---G~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG-~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY---GPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDG-KDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc---CcceeEEEee--cCCCceEEeccCcccHHHHHhhcCC-ccccCceEEEEee
Confidence 45689999999999999999999999 9888865554 5779999999999999999999974 5788999999876
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
.-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6553
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.02 E-value=5e-10 Score=111.23 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=59.6
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCC---C------CceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccc
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHT---G------EGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGN 72 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~---g------~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g 72 (301)
+++|||||||+.+|+++|++||.++. | .+.|..+.+.. ++|||||+|.+.|+|+.||+ ++ +..|.|
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~---~kg~afVeF~~~e~A~~Al~-l~-g~~~~g 249 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK---EKNFAFLEFRTVEEATFAMA-LD-SIIYSN 249 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC---CCCEEEEEeCCHHHHhhhhc-CC-CeEeeC
Confidence 46899999999999999999999751 1 13455555433 57999999999999999995 54 578999
Q ss_pred eeEEEecC
Q 022209 73 SYLKASDA 80 (301)
Q Consensus 73 r~LkV~~a 80 (301)
+.|+|...
T Consensus 250 ~~l~v~r~ 257 (509)
T TIGR01642 250 VFLKIRRP 257 (509)
T ss_pred ceeEecCc
Confidence 99999753
No 38
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8e-10 Score=103.83 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
++||-|+..++-++|++-|..+ |+|.+++|+.|-. |+|||||.|.+.++|+.||+.|| +.++++|.||-+=|-
T Consensus 65 vfvgdls~eI~~e~lr~aF~pF---GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-GqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPF---GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-GQWLGRRTIRTNWAT 140 (321)
T ss_pred EEehhcchhcchHHHHHHhccc---cccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-Ceeeccceeeccccc
Confidence 8999999999999999999999 9999999999965 99999999999999999999997 589999999998877
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
+.+.
T Consensus 141 RKp~ 144 (321)
T KOG0148|consen 141 RKPS 144 (321)
T ss_pred cCcc
Confidence 7664
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1e-09 Score=98.64 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=70.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+.+|||||||..+-+.|+.++|-+| |.|..++++.....=+||||+|+++.+|+.||-.-+ +++|+|.-|+|..+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKy---g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRd-GYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKY---GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRD-GYDYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhh---cceEEEEeccCCCCCCeeEEEecCccchhhhhhccc-ccccCcceEEEEecc
Confidence 3589999999999999999999999 999999999887777999999999999999998765 689999999998754
Q ss_pred C
Q 022209 82 R 82 (301)
Q Consensus 82 ~ 82 (301)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.3e-09 Score=100.73 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=68.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
.+||||||+..+|+++|++.|+.| |+|..+||..|+ |||||.|++.|+|.+||-.+|+ .+++|...|-+=.+.
T Consensus 165 tsVY~G~I~~~lte~~mr~~Fs~f---G~I~EVRvFk~q---GYaFVrF~tkEaAahAIv~mNn-tei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 165 TSVYVGNIASGLTEDLMRQTFSPF---GPIQEVRVFKDQ---GYAFVRFETKEAAAHAIVQMNN-TEIGGQLVRCSWGKE 237 (321)
T ss_pred ceEEeCCcCccccHHHHHHhcccC---CcceEEEEeccc---ceEEEEecchhhHHHHHHHhcC-ceeCceEEEEecccc
Confidence 479999999999999999999999 999999999987 9999999999999999999985 689999999876555
Q ss_pred C
Q 022209 83 R 83 (301)
Q Consensus 83 d 83 (301)
.
T Consensus 238 ~ 238 (321)
T KOG0148|consen 238 G 238 (321)
T ss_pred C
Confidence 4
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.6e-09 Score=109.34 Aligned_cols=130 Identities=16% Similarity=0.223 Sum_probs=95.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.||+|++||++++.++|.+||+.. |.|-.|-|+++.. +||||||+|+-.|+++.|+...++ .-|+||.|+|.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~v---GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~-~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYV---GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQ-SKFEGRILNVDP 81 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcc---cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhc-Ccccceeccccc
Confidence 799999999999999999999998 9999999999987 899999999999999999999874 468999999987
Q ss_pred CCCCC----------------CCCCCCCCCCCccCCC---ceEEecccccCCeeEEEeeccc--eee----EEecCceeE
Q 022209 80 AQRRT----------------PHYAKRGIPHYQLGDD---LKLNFGCHISKDKFSVLWSQEN--VSV----KLCSDIRKF 134 (301)
Q Consensus 80 a~~di----------------~~~pRp~~~~~r~~~~---~~l~~G~~vs~~~f~v~w~~~~--V~~----~~~~~~rkl 134 (301)
|.... +..+||....... +. +.=++-|..+++.+-..++.=| |.+ ..++++|.|
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~-~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGF 160 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDL-PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGF 160 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccC-ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccce
Confidence 76532 2113332221121 12 3334556667776666666544 222 234477877
Q ss_pred EEE
Q 022209 135 EFF 137 (301)
Q Consensus 135 ~F~ 137 (301)
-|.
T Consensus 161 aFV 163 (678)
T KOG0127|consen 161 AFV 163 (678)
T ss_pred EEE
Confidence 665
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.92 E-value=1.4e-09 Score=103.07 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=68.2
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|.-++||||||..+++.+|+.+||+| |+|..|.|+ +.|||||+++..+|+.||..++ +.-++|..|+|..+
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~y---gkVlECDIv-----KNYgFVHiEdktaaedairNLh-gYtLhg~nInVeaS 71 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQY---GKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLH-GYTLHGVNINVEAS 71 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhh---CceEeeeee-----cccceEEeecccccHHHHhhcc-cceecceEEEEEec
Confidence 67789999999999999999999999 999999998 6899999999999999999886 57899999999876
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
+-.
T Consensus 72 ksK 74 (346)
T KOG0109|consen 72 KSK 74 (346)
T ss_pred ccc
Confidence 655
No 43
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.4e-09 Score=103.86 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=92.6
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRR 83 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~d 83 (301)
|||-|||.+++.++|.++|+.+ |+|.+|+|.+|.. |+|| ||||+++++|++||+.+|| ..+.|..|-|-.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~---g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng-~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEF---GNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNG-MLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhh---cCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcC-cccCCCeeEEeeccch
Confidence 8999999999999999999999 9999999999998 9999 9999999999999999985 5788888888877776
Q ss_pred CCCCCCCCC-CCCccCCCceEEecccccCCeeEEEeec--cceeeEEec
Q 022209 84 TPHYAKRGI-PHYQLGDDLKLNFGCHISKDKFSVLWSQ--ENVSVKLCS 129 (301)
Q Consensus 84 i~~~pRp~~-~~~r~~~~~~l~~G~~vs~~~f~v~w~~--~~V~~~~~~ 129 (301)
..+ .+|.. ..-+++.-.+.+.....+++.+.-+|+. +-+++.+++
T Consensus 154 ~er-~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~ 201 (369)
T KOG0123|consen 154 EER-EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMR 201 (369)
T ss_pred hhh-cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEee
Confidence 552 22211 1222323355666677777788888875 334555555
No 44
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=9.6e-09 Score=73.39 Aligned_cols=56 Identities=25% Similarity=0.309 Sum_probs=49.0
Q ss_pred HHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 19 VKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 19 Lk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|.++|++| |+|.++.+..+. +|+|||+|.+.++|+.|++.+++ ..++|+.|+|+-|
T Consensus 1 L~~~f~~f---G~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~-~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF---GEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNG-RQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT---S-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTT-SEETTEEEEEEEE
T ss_pred ChHHhCCc---ccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEC
Confidence 68899999 999999997666 79999999999999999999974 5789999999753
No 45
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=7e-09 Score=98.52 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=71.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+||||+-|++.+++++|+..|+.| |.|..++|+.|+. |||||||+|+++.+...|-..++ ++.++|+-+-|.-
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~Y---G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-G~~Idgrri~VDv 177 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKY---GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-GIKIDGRRILVDV 177 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhc---CcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-CceecCcEEEEEe
Confidence 699999999999999999999999 9999999999975 99999999999999999999986 6889999998875
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
-....+
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 444433
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=7.4e-09 Score=102.58 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=72.3
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
.+|+.||||.+.++|||+++.+.+ |+|.=|++..|.+ +||-|.|+|.++|.+++|++.+| ..++.||+|+|.|.+
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekv--Gev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~ln-k~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKV--GEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLN-KYEVNGRELVVKEDH 122 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhc--CceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhh-hccccCceEEEeccC
Confidence 599999999999999999999997 9999999999988 99999999999999999999997 679999999999966
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
+.
T Consensus 123 d~ 124 (608)
T KOG4212|consen 123 DE 124 (608)
T ss_pred ch
Confidence 63
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=8.2e-09 Score=104.40 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=71.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHh----C-CCccccce
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLA----S-VRLSYGNS 73 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~----~-~~l~~~gr 73 (301)
++||||-|||+.+|+++|++.|.++ |.|.-+.|+.++. |.|=|||+|.++.+|+.+|.++ . +++.++||
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskF---G~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKF---GEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhh---ccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 5799999999999999999999999 9999999998876 9999999999999999999998 3 34899999
Q ss_pred eEEEecCCC
Q 022209 74 YLKASDAQR 82 (301)
Q Consensus 74 ~LkV~~a~~ 82 (301)
.|+|..|-.
T Consensus 369 ~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 LLKVTLAVT 377 (678)
T ss_pred EEeeeeccc
Confidence 999987644
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=3.9e-09 Score=104.21 Aligned_cols=124 Identities=16% Similarity=0.198 Sum_probs=97.9
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCC--CccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASV--RLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~--~l~~~gr~LkV~ 78 (301)
++|||-||.+++|.||+++||+| |.|+.|.|+.|+. |||..||.|.+.++|.+||+++.| .+.=+..++.|.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~y---g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKY---GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hheeccCCccccHHHHHHHHHHh---CceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 68999999999999999999999 9999999999986 999999999999999999999975 344455688888
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEecccccCC---eeEEEeec----cceeeEEec-CceeEEEEEEe
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKD---KFSVLWSQ----ENVSVKLCS-DIRKFEFFLSY 140 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs~~---~f~v~w~~----~~V~~~~~~-~~rkl~F~~s~ 140 (301)
.|+...- |. . ++.+|-+|++-..- +..++++. +++.+.-|+ +.+|=+-++.|
T Consensus 113 ~Ad~E~e---r~------~-~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~f 172 (510)
T KOG0144|consen 113 YADGERE---RI------V-EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKF 172 (510)
T ss_pred ccchhhh---cc------c-cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEE
Confidence 7766532 21 2 67788888876543 44444443 778888888 66666666555
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.5e-08 Score=93.70 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=67.8
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
-|||+||+..+.+.-|-++|..+ |.|..++|+.|-+ -+|||||+|++-++|.-||..+| +..+++|.|.|+.
T Consensus 280 ciFvYNLspd~de~~LWQlFgpF---GAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-Gy~lg~rvLQVsF 354 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPF---GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-GYRLGDRVLQVSF 354 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcc---cceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-CccccceEEEEEE
Confidence 48999999999999999999999 9999999999976 88999999999999999999997 5889999999985
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=97.63 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=68.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.+++||+|+|.++++.|+++|.++ |+|..|.|+.|+. ||||+||+|++++...+++..-. +.++|+.+-+-
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~---Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~--h~~dgr~ve~k 80 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQF---GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART--HKLDGRSVEPK 80 (311)
T ss_pred CcceeecCcCccccHHHHHHHhccc---CceeeEEEeccCCCCCcccccceecCCCcchheeecccc--cccCCccccce
Confidence 3589999999999999999999999 9999999999986 99999999999999988887753 56888888877
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
+|-..-
T Consensus 81 ~av~r~ 86 (311)
T KOG4205|consen 81 RAVSRE 86 (311)
T ss_pred eccCcc
Confidence 665543
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3.4e-08 Score=92.80 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=69.3
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
++-|--||...|++||+.+|.+. |+|.+|+++.|+- |-|||||.+.++++|++||+-+| +|.+..+.|+|+-|
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~Si---GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN-GLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSI---GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN-GLRLQNKTIKVSYA 118 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcc---cceeeeeeeeccccccccccceeeecChHHHHHHHhhhc-ceeeccceEEEEec
Confidence 37788899999999999999998 9999999999986 88999999999999999999997 69999999999975
Q ss_pred CC
Q 022209 81 QR 82 (301)
Q Consensus 81 ~~ 82 (301)
++
T Consensus 119 RP 120 (360)
T KOG0145|consen 119 RP 120 (360)
T ss_pred cC
Confidence 44
No 52
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.72 E-value=3.1e-08 Score=89.96 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=69.4
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+||+-+|..+-+.++..||.++. |+|.+.++...+. |||||||+|+++|.|+-|.+.||| +.|+++-|.+.-++
T Consensus 52 ~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN-YLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 52 VYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN-YLLMEHLLECHVMP 128 (214)
T ss_pred eeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh-hhhhhheeeeEEeC
Confidence 68999999999999999999996 9999999966654 999999999999999999999985 78999999999887
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=7.1e-08 Score=79.81 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=68.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+-+||-|||+++|++|.-++|.+| |+|..++|-.++.-||-|||-+++-.+|.+|.+-++ +..+.+++|.|--
T Consensus 19 riLyirNLp~~ITseemydlFGky---g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhls-g~n~~~ryl~vly 91 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKY---GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLS-GYNVDNRYLVVLY 91 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcc---cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhc-ccccCCceEEEEe
Confidence 358999999999999999999999 999999999999999999999999999999999996 5788999999954
No 54
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.5e-09 Score=95.79 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=77.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.=|||||||+..|+.||...|++| |+|+.+.++.|+. |+||||.-+++..+--.|++-+| +.-+.||.|+|.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqy---Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-Giki~gRtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQY---GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-GIKILGRTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeecc---CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-CceecceeEEee
Confidence 3459999999999999999999999 9999999999986 99999999999999999998886 578999999997
Q ss_pred cCCCCCCCCCCCCCCCCccCCCceEEec
Q 022209 79 DAQRRTPHYAKRGIPHYQLGDDLKLNFG 106 (301)
Q Consensus 79 ~a~~di~~~pRp~~~~~r~~~~~~l~~G 106 (301)
-...- +.| .....| ++++.+++
T Consensus 111 Hv~~Y----k~p-k~~E~~-d~~t~~L~ 132 (219)
T KOG0126|consen 111 HVSNY----KKP-KESEEM-DAVTKELQ 132 (219)
T ss_pred ecccc----cCC-chhhhh-hHHHHHHh
Confidence 53332 222 124556 66665543
No 55
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=5.4e-08 Score=83.12 Aligned_cols=74 Identities=11% Similarity=0.103 Sum_probs=65.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
+.|||||||++.++++.+-++|+.. |+|.++-+-.|+. +=||.||+|-+.++|+.|+.-.++ ..++.++|++.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~c---G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg-trLddr~ir~D 111 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKC---GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG-TRLDDRPIRID 111 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhc---cchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc-Ccccccceeee
Confidence 5689999999999999999999997 9999987778876 559999999999999999999874 57788888875
Q ss_pred c
Q 022209 79 D 79 (301)
Q Consensus 79 ~ 79 (301)
-
T Consensus 112 ~ 112 (153)
T KOG0121|consen 112 W 112 (153)
T ss_pred c
Confidence 4
No 56
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.66 E-value=2.2e-08 Score=96.24 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=71.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.++|+|||||.++++++|+++||++ |.|..+.++.|.+ +||||||+|.+++++..+...- -..++|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~---g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~--f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQF---GKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK--FHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhcc---ceeEeeEEeecccccccccceeeEeccccccceecccc--eeeecCceeeEe
Confidence 3689999999999999999999999 9999999999987 8999999999999999887763 358999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.|..+-.
T Consensus 172 rA~pk~~ 178 (311)
T KOG4205|consen 172 RAIPKEV 178 (311)
T ss_pred eccchhh
Confidence 8877655
No 57
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=2.3e-08 Score=98.87 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=71.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccc--eeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGN--SYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g--r~LkV~ 78 (301)
.++|||-|+..+|+.|+++.|.+| |.|.+|.|..|.. |||.|||+|++.|-|..||+++|+..-+.| .+|.|.
T Consensus 125 ~KLFvg~lsK~~te~evr~iFs~f---G~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 125 RKLFVGMLSKQCTENEVREIFSRF---GHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred hhhhhhhccccccHHHHHHHHHhh---CccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 468999999999999999999999 9999999998876 999999999999999999999996555555 489999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
.|++.-
T Consensus 202 FADtqk 207 (510)
T KOG0144|consen 202 FADTQK 207 (510)
T ss_pred ecccCC
Confidence 887754
No 58
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=9.7e-08 Score=94.82 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=66.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
|-|||-||+-++|++-|++.|++| |.|.+|+.+ |-||||||++.++|-+|++.+| +.+++|..|-|..|++
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~---G~veRVkk~-----rDYaFVHf~eR~davkAm~~~n-gkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEF---GKVERVKKP-----RDYAFVHFAEREDAVKAMKETN-GKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhc---cceEEeecc-----cceeEEeecchHHHHHHHHHhc-CceecCceEEEEecCC
Confidence 359999999999999999999999 999999877 4599999999999999999997 5799999999999877
Q ss_pred C
Q 022209 83 R 83 (301)
Q Consensus 83 d 83 (301)
.
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 4
No 59
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=1.1e-07 Score=81.99 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=70.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
-|+|.|+-..+|++|+.+.|..| |.|..+.+-.|+. .+|||.|++++.++|++||+++| ++.+.|..+.|.-+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dy---GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-g~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADY---GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-GAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhc---ccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-chhhhCCceeEEEE
Confidence 48999999999999999999999 9999999999987 99999999999999999999997 57899999999765
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
...
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 444
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.54 E-value=8.6e-08 Score=96.91 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=70.9
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+|||||=+..+|++|+..||.+ |.|..+.+..|-+ ++||||+||.+.+.|..|+..+|+ +++.||.++|.-..
T Consensus 281 l~vgnLHfNite~~lr~ifepf---g~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPF---GKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCc---ccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecCceEEEEEee
Confidence 8999999999999999999999 9999999999863 999999999999999999999986 99999999998765
Q ss_pred CCCC
Q 022209 82 RRTP 85 (301)
Q Consensus 82 ~di~ 85 (301)
+.+.
T Consensus 357 ~r~~ 360 (549)
T KOG0147|consen 357 ERVD 360 (549)
T ss_pred eecc
Confidence 5544
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.4e-07 Score=89.11 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=72.0
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
=+||++-||....+.||-..|-.+ |.|.+++|..||- |+-||||.|+++.+|+.||.+|| +..+|=+.|||..
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PF---GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-GFQIGMKRLKVQL 361 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPF---GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-GFQIGMKRLKVQL 361 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccc---cceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-chhhhhhhhhhhh
Confidence 479999999999999999999999 9999999999986 99999999999999999999997 5788999999987
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
.++.-.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 555444
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=2.4e-07 Score=95.95 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=67.5
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
|||.|+++.+|.++|.+.|... |+|.+++|..-++ |.|||||+|.++++|++|+.+++ +..++|+.|.++
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~---G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-gtvldGH~l~lk 593 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQ---GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-GTVLDGHKLELK 593 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhc---CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhc-CceecCceEEEE
Confidence 9999999999999999999997 9999999997765 77999999999999999999997 468999999998
Q ss_pred cCC
Q 022209 79 DAQ 81 (301)
Q Consensus 79 ~a~ 81 (301)
-++
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 766
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.2e-07 Score=90.13 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=67.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+.+|.||||....+.+||++.||+| |+|..|.|+ |+||||+|+-.+.|..||..++| .+|.|+.|.|...-
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~y---gpviecdiv-----kdy~fvh~d~~eda~~air~l~~-~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKY---GPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDN-TEFQGKRMHVQLST 148 (346)
T ss_pred ccccccCCCCccccCHHHhhhhccc---CCceeeeee-----cceeEEEEeeccchHHHHhcccc-cccccceeeeeeec
Confidence 3479999999999999999999999 999999998 78999999999999999999975 59999999998755
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
-++
T Consensus 149 srl 151 (346)
T KOG0109|consen 149 SRL 151 (346)
T ss_pred ccc
Confidence 544
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=1.6e-07 Score=91.63 Aligned_cols=73 Identities=12% Similarity=0.240 Sum_probs=66.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
-+||||.|++...++.|+.-|..+ |.|.++.+.-|.- .+|||||+++-+|+|+.|++.|| +.-+|||+|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PF---GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMN-g~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPF---GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN-GQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCC---CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhc-cccccCccccccC
Confidence 369999999999999999999999 9999988776643 88999999999999999999997 5789999999973
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=3.8e-07 Score=88.31 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=67.3
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
+|+||||+-..+++.||+++|.+| |.+.++.+...+ |-|||+|++.++|+.|....-+.+.++|+.|+|.=+..
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqy---Geirsi~~~~~~---~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQY---GEIRSIRILPRK---GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhc---CCeeeEEeeccc---ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 689999998899999999999999 999999998755 79999999999999999998778999999999975444
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=4.2e-07 Score=88.81 Aligned_cols=77 Identities=12% Similarity=0.295 Sum_probs=69.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|||..+-.+.+++||+..||.+ |.|..|.+..+-+ .|||||++|++..+-..||..|| -.++||.+|+|-.
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAF---G~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-lFDLGGQyLRVGk 286 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAF---GEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-LFDLGGQYLRVGK 286 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhh---cceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc-hhhcccceEeccc
Confidence 379999999999999999999999 9999999998866 88999999999999999999996 5689999999976
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
.-.+
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 5443
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.40 E-value=6e-07 Score=91.64 Aligned_cols=80 Identities=18% Similarity=0.207 Sum_probs=73.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
++++.|+||+..+-|.||+.+|+.| |.|+-++|++.-. .|-||||+|.+.++|.+-|+-+. +.+++|+.|.|.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy---GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-rTELHGrmISVE 480 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY---GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-RTELHGRMISVE 480 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh---cceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-hhhhcceeeeee
Confidence 5789999999999999999999999 9999999998854 89999999999999999999986 568999999999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.++-.|.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 8877665
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.37 E-value=6.9e-07 Score=93.51 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=64.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
++||+||+||..+++.||++.||+| |.|.++.++. +||+|||.|....+|++|+.++++ .-+.++.+++.=
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef---GeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n-~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF---GEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSN-VKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc---ccceeEeecc---CCceeEEEEeehhHHHHHHHHHhc-ccccceeeEEee
Confidence 6799999999999999999999999 9999998887 569999999999999999999974 567888887754
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.36 E-value=1e-06 Score=80.88 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=70.4
Q ss_pred eEEEeCCCccccHHHHHH----HHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 4 KISLYGFASHVSARAVKE----FLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~----~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
||||-||+-.+..++|+. +|++| |+|.++........||=|||.|.+.++|..|+.+++ +..|-|+++++..
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqf---G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~-gfpFygK~mriqy 86 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQF---GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQ-GFPFYGKPMRIQY 86 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhh---CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhc-CCcccCchhheec
Confidence 899999999999999999 99999 999998887666699999999999999999999886 5899999999998
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
|..|
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 8775
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=7.8e-07 Score=87.39 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=71.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.++||-|++..++.+.|++.|+.+ |+|.+++|..+.. ++|||||.|++.++|..|+..+|+ -.++++.|.|..+
T Consensus 271 ~nl~vknld~~~~~e~L~~~f~~~---GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~-~~i~~k~l~vav~ 346 (369)
T KOG0123|consen 271 ANLYVKNLDETLSDEKLRKIFSSF---GEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNG-RLIGGKPLYVAVA 346 (369)
T ss_pred cccccccCccccchhHHHHHHhcc---cceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhCh-hhhcCCchhhhHH
Confidence 479999999999999999999999 9999999998866 999999999999999999999974 5789999999888
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
.....
T Consensus 347 qr~~~ 351 (369)
T KOG0123|consen 347 QRKED 351 (369)
T ss_pred hhhcc
Confidence 75554
No 71
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.3e-06 Score=87.15 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=67.4
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCC--C-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK--G-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr--~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
..+|||.|||.+++.++|+++|..+ |.|...+|..-. . +-.||||+|++.++++.||.+. .+.++++.|.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F---G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF---GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc---ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEE
Confidence 4579999999999999999999999 999988877543 2 2299999999999999999997 588999999999
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
+-....
T Consensus 363 ek~~~~ 368 (419)
T KOG0116|consen 363 EKRPGF 368 (419)
T ss_pred eccccc
Confidence 865543
No 72
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=5.7e-07 Score=82.82 Aligned_cols=74 Identities=18% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
|.+||||+|+...|+++-|.++|-+. |.|+.+.|..+++ .+ ||||.|+++-+...|++++|+ ..+-++.|++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiqa---GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQA---GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENG-DDLEEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhcc---CceEEEeCCCCccCCCc-eeeeecccccchhhhhhhccc-chhccchhhcc
Confidence 66899999999999999999999997 9999999999887 44 999999999999999999974 56667777765
Q ss_pred c
Q 022209 79 D 79 (301)
Q Consensus 79 ~ 79 (301)
.
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 4
No 73
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.18 E-value=2.8e-06 Score=78.68 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+.++|||+++.+|.+++...|+.+ |+|..+.|..|+. ++|||+|+|.+.+.++.|+. +| +-.+.|+.+.|..
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~C---g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESC---GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-GSEIPGPAIEVTL 176 (231)
T ss_pred ceEEEeccccccccchhhheeecc---CCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-Ccccccccceeee
Confidence 579999999999999999999997 9999999999987 89999999999999999999 55 4588999999998
Q ss_pred CCCCCC
Q 022209 80 AQRRTP 85 (301)
Q Consensus 80 a~~di~ 85 (301)
....+.
T Consensus 177 ~r~~~p 182 (231)
T KOG4209|consen 177 KRTNVP 182 (231)
T ss_pred eeeecC
Confidence 777754
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.18 E-value=6.4e-06 Score=76.95 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=71.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
-+|+|.|||+.|+++||+++|+++ |.+..+-|-.++. |-|-|-|.|+..++|+.|+...++ ..++|+.+++..+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~---~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEF---GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHh---ccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCceeeeEEe
Confidence 369999999999999999999999 8899998888887 679999999999999999999986 8999999999887
Q ss_pred CCCCC
Q 022209 81 QRRTP 85 (301)
Q Consensus 81 ~~di~ 85 (301)
..+..
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 76654
No 75
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=6.4e-06 Score=82.82 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=62.4
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
-|.+-||||++|++||.+||+.. +|.++.+..+.. ..|=|+|+|+++|+++.|+.+ ++..++.|+|-|-.+..
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~----~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNC----GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK--DRESMGHRYIEVFTAGG 85 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcC----ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh--hHHHhCCceEEEEccCC
Confidence 48899999999999999999996 688865554432 779999999999999999998 35678999999987754
Q ss_pred C
Q 022209 83 R 83 (301)
Q Consensus 83 d 83 (301)
+
T Consensus 86 ~ 86 (510)
T KOG4211|consen 86 A 86 (510)
T ss_pred c
Confidence 3
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=6.4e-06 Score=85.68 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=68.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.+|-|-|+|+.++-.+++++|..| |.|.+|+|..-.. +||||||+|-++.+|.+|++++. ..-+-||-|...-
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aF---GqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~-STHlyGRrLVLEw 689 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAF---GQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG-STHLYGRRLVLEW 689 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcc---cceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc-ccceechhhheeh
Confidence 368899999999999999999999 9999999996633 89999999999999999999987 4567788888877
Q ss_pred CCCCC
Q 022209 80 AQRRT 84 (301)
Q Consensus 80 a~~di 84 (301)
|..|-
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 77663
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.00 E-value=8.5e-06 Score=73.25 Aligned_cols=77 Identities=8% Similarity=0.148 Sum_probs=66.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEE-EEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSD-VEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
+.+|+||||+..+.+.-|-+.|+.+ |.+.+ -+|..|.. ++|||||-|++.|++.+||..+| +..+++|.+.|
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsaf---G~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-gq~l~nr~itv 171 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAF---GVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-GQYLCNRPITV 171 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhc---cccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-cchhcCCceEE
Confidence 3579999999999999999999999 77664 46665544 99999999999999999999997 46889999999
Q ss_pred ecCCC
Q 022209 78 SDAQR 82 (301)
Q Consensus 78 ~~a~~ 82 (301)
+-+..
T Consensus 172 ~ya~k 176 (203)
T KOG0131|consen 172 SYAFK 176 (203)
T ss_pred EEEEe
Confidence 87654
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=8.2e-06 Score=75.01 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=60.7
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
..+|||+||+.+.+.||..||..| |.+.+|.++ -|||||+|++..+|..||..+++ -.|+|..+.|..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y---g~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~-~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY---GKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDG-KELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc---cccccceee-----cccceeccCchhhhhcccchhcC-ceecceeeeeeccc
Confidence 568999999999999999999999 999999886 49999999999999999999974 46666666665544
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.85 E-value=2.9e-05 Score=77.63 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=62.6
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
-||+|-|||++.|++-|+|-|.++ |.|.-++|...-.|+| .|.|.++|.|+.|+.++++ ..++||.|+|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~---G~v~yadime~GkskG--VVrF~s~edAEra~a~Mng-s~l~Gr~I~V~ 606 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREI---GHVLYADIMENGKSKG--VVRFFSPEDAERACALMNG-SRLDGRNIKVT 606 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhc---cceehhhhhccCCccc--eEEecCHHHHHHHHHHhcc-CcccCceeeee
Confidence 379999999999999999999998 9999999943333888 9999999999999999974 57899999986
No 80
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=97.74 E-value=1e-05 Score=46.77 Aligned_cols=18 Identities=44% Similarity=1.189 Sum_probs=16.6
Q ss_pred ceeeeccCCCcccccChh
Q 022209 275 VNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~~ 292 (301)
.+||.|++.||+.++||+
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 379999999999999995
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=5.5e-05 Score=71.79 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=70.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCC--ccccceeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVR--LSYGNSYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~--l~~~gr~LkV~ 78 (301)
+++|||=|...-+|+|++.+|..+ |.+.+|.|...-+ |+|-|||.|.+..+|+.||+.+.+. +.=..+.|.|.
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pf---G~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPF---GNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhccc---CCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 579999999999999999999999 9999999997766 9999999999999999999998743 33345689999
Q ss_pred cCCCCCC
Q 022209 79 DAQRRTP 85 (301)
Q Consensus 79 ~a~~di~ 85 (301)
.|+.|--
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 8888753
No 82
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=7e-05 Score=73.29 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=63.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
-+||--|..-+|++||.-.|+.+ |.|.+|+|+.|+. |=-||||+|++.++.++|--.|+| ..++.|.|-|.
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrF---G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIHVD 314 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRF---GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIHVD 314 (479)
T ss_pred eEEEEecCCcccccchhhHHhhc---ccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEEee
Confidence 48999999999999999999999 9999999999986 889999999999999999999975 45566655553
No 83
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.62 E-value=0.00023 Score=66.09 Aligned_cols=79 Identities=18% Similarity=0.232 Sum_probs=63.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEee-cCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccc---ceeE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVG-QNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYG---NSYL 75 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~-~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~---gr~L 75 (301)
+|+||+|||-++...||-.+|..+-| - ..+-|+ +++. -+.+|||+|.+...|++|++++|+ ..|+ ++.|
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~G--Y-EgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stL 110 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHG--Y-EGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTL 110 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCC--c-cceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCcee
Confidence 69999999999999999999999854 2 233444 4443 569999999999999999999974 4554 6789
Q ss_pred EEecCCCCCC
Q 022209 76 KASDAQRRTP 85 (301)
Q Consensus 76 kV~~a~~di~ 85 (301)
++..|+.+.-
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9888877754
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.48 E-value=0.00021 Score=72.12 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=57.6
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEE-EEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSD-VEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~-~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.|.+-||||++|++|+.+||+.. --|.. +-+..|.. +-|=|||||++.|.|+.|+..- +-.++.|++-|-.+
T Consensus 105 vVRLRGLPfscte~dI~~FFaGL---~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh--re~iGhRYIEvF~S 179 (510)
T KOG4211|consen 105 VVRLRGLPFSCTEEDIVEFFAGL---EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH--RENIGHRYIEVFRS 179 (510)
T ss_pred eEEecCCCccCcHHHHHHHhcCC---cccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH--HHhhccceEEeehh
Confidence 48899999999999999999986 23333 33445555 5599999999999999999884 35688999998554
Q ss_pred C
Q 022209 81 Q 81 (301)
Q Consensus 81 ~ 81 (301)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 3
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.39 E-value=0.0004 Score=72.83 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=70.1
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCcccccee
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSY 74 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~ 74 (301)
|.+++|||||+.+++++.|..-|..| |.|.+++|.-.++ .|--|||-|-+..+|++|+..+++ ..+.++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf---gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg-~iv~~~e 248 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF---GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG-IIVMEYE 248 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc---CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc-eeeeeee
Confidence 56789999999999999999999999 9999999999986 668899999999999999999974 6788888
Q ss_pred EEEecCCCC
Q 022209 75 LKASDAQRR 83 (301)
Q Consensus 75 LkV~~a~~d 83 (301)
++.-=++.-
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 887655443
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00016 Score=73.71 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=61.1
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
.+|.|-|+|.+|+.++|...|+.| |+|.. |......||+-||+|=+--.|++|+.+++ +..+.|+.|+
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~y---Geir~--ir~t~~~~~~~~v~FyDvR~A~~Alk~l~-~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAY---GEIRE--IRETPNKRGIVFVEFYDVRDAERALKALN-RREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhh---cchhh--hhcccccCceEEEEEeehHhHHHHHHHHH-HHHhhhhhhc
Confidence 589999999999999999999999 99988 44555589999999999999999999997 5688888888
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.22 E-value=0.0019 Score=64.36 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=92.8
Q ss_pred eEEEeCC-CccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 4 KISLYGF-ASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 4 tI~Vgnl-p~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
.|-|.|+ +..+|.+.|-.+|.-| |+|.+++|...+. -.|-|||.+...|+.|++.+++ ..+-|+.|+|...+.
T Consensus 299 vllvsnln~~~VT~d~LftlFgvY---GdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g-~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVY---GDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEG-HKLYGKKLRVTLSKH 372 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhh---cceEEEEeeecCC--cceeeeecchhHHHHHHHHhhc-ceecCceEEEeeccC
Confidence 4667776 5678999999999999 9999999998774 8899999999999999999974 566679999999888
Q ss_pred CCCCCCCC------------CCCCCcc------------CCCceEEeccc---ccCCeeEEEeecccee---eEEecCce
Q 022209 83 RTPHYAKR------------GIPHYQL------------GDDLKLNFGCH---ISKDKFSVLWSQENVS---VKLCSDIR 132 (301)
Q Consensus 83 di~~~pRp------------~~~~~r~------------~~~~~l~~G~~---vs~~~f~v~w~~~~V~---~~~~~~~r 132 (301)
.-+++||- ..+.+|+ |+-.+||+-.. +++++...+|...|-. +.|.++.+
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~ 452 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDR 452 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCc
Confidence 76655551 1233444 44557777665 4678888888765533 34444444
Q ss_pred eE
Q 022209 133 KF 134 (301)
Q Consensus 133 kl 134 (301)
|+
T Consensus 453 km 454 (492)
T KOG1190|consen 453 KM 454 (492)
T ss_pred ce
Confidence 43
No 88
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.00094 Score=67.87 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=55.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHh
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLA 64 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~ 64 (301)
.+||||||+|--++|+||...||..- |-|.=|-|-+|-+ ++|=|.|+|.+..+=-+||++.
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~ly--GgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLF--GGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhc--CceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 37999999999999999999999442 9999999999955 9999999999999999999983
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.15 E-value=0.0018 Score=52.73 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVR 67 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~ 67 (301)
.||-+-|||...|.++|.+.+++.. .|+..=+.+..|-. .+|||||-|.++++|..-.+..++.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~-~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF-KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc-cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 4789999999999999999999874 68888888888854 8899999999999999999998753
No 90
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.09 E-value=0.0018 Score=63.21 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=65.3
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEE--------EEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccc
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVS--------DVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGN 72 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--------~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~g 72 (301)
..|||+|||..+|-+++.++|..+ |-|- .|++..+.. -+|=|-+.+--.|+.+.|+..++ ...+.|
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKc---GiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilD-e~~~rg 210 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKC---GIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILD-EDELRG 210 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhc---ceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhC-cccccC
Confidence 359999999999999999999997 7665 456665554 88999999999999999999997 357889
Q ss_pred eeEEEecCCC
Q 022209 73 SYLKASDAQR 82 (301)
Q Consensus 73 r~LkV~~a~~ 82 (301)
+.|+|..|.-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998764
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.03 E-value=0.00023 Score=72.55 Aligned_cols=117 Identities=20% Similarity=0.184 Sum_probs=85.4
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+|+++.-++..++..||.+||+.. |.|-.|+|+.|+. |+|-|+|+|-+.++...||.+.+ ..+.|-+|.|..
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~---gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsG--qrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIV---GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSG--QRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhh---cCcceeEeeccccchhhcceeEEEEecccchhhHhhhcC--CcccCceeEecc
Confidence 456667778889999999999998 9999999999987 88999999999999999998864 678999999965
Q ss_pred CCC--CCCCC----CCC--CCCCCccCCCceEEeccc---ccC----CeeEEEeeccceeeEEec
Q 022209 80 AQR--RTPHY----AKR--GIPHYQLGDDLKLNFGCH---ISK----DKFSVLWSQENVSVKLCS 129 (301)
Q Consensus 80 a~~--di~~~----pRp--~~~~~r~~~~~~l~~G~~---vs~----~~f~v~w~~~~V~~~~~~ 129 (301)
.+. +.+.. -++ .+.|+ ..|++|++ +++ ..|.-+|+=+.|....++
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~-----~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPM-----RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred cHHHHHHHHhccccccccccccch-----hhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 433 21100 111 11122 22455544 333 467777777888888886
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.99 E-value=0.00047 Score=65.78 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=65.7
Q ss_pred ceEE-EeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 3 KKIS-LYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 3 ~tI~-Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.+|+ |+|++.+++.++|+.+|... |.|..+++.++.. ++|||+|.|.+...+..|+.. + .-..+++++.+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~---~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSS---GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-TRSIGGRPLRLE 259 (285)
T ss_pred ccceeecccccccchHHHhhhccCc---CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-cCcccCcccccc
Confidence 3677 99999999999999888776 9999999999987 889999999999999998886 3 346788999988
Q ss_pred cCCCCC
Q 022209 79 DAQRRT 84 (301)
Q Consensus 79 ~a~~di 84 (301)
+.+++.
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 766554
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.97 E-value=0.0051 Score=49.34 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred eEEEeCCCccccHHH----HHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 4 KISLYGFASHVSARA----VKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 4 tI~Vgnlp~~vta~d----Lk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|.|||....... |+.+.+... |.|..+ +.|=|+|.|.+.++|+.|..-|++. +.-|+.|.|+.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCG--GkVl~v-------~~~tAilrF~~~~~A~RA~KRmegE-dVfG~kI~v~~ 73 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCG--GKVLSV-------SGGTAILRFPNQEFAERAQKRMEGE-DVFGNKISVSF 73 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT----EEE---------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EEES
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccC--CEEEEE-------eCCEEEEEeCCHHHHHHHHHhhccc-ccccceEEEEE
Confidence 589999999888765 556666876 889887 5689999999999999999999864 45566788876
Q ss_pred C
Q 022209 80 A 80 (301)
Q Consensus 80 a 80 (301)
.
T Consensus 74 ~ 74 (90)
T PF11608_consen 74 S 74 (90)
T ss_dssp S
T ss_pred c
Confidence 5
No 94
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.94 E-value=0.0008 Score=63.45 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=64.1
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+||-|-|...++++-|..-|.+| =+-..++|+.|++ |+|||||-|-+.+++..|+..|++ -..|.|+++.+.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kf---psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g-kyVgsrpiklRk 266 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKF---PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG-KYVGSRPIKLRK 266 (290)
T ss_pred eeecccccccccHHHHHHHHHhc---cchhhccccccccccccccceeeeecCHHHHHHHHHhhcc-cccccchhHhhh
Confidence 68999999999999999999999 6788899998876 999999999999999999999974 467888877654
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.94 E-value=0.0023 Score=46.31 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=43.8
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHH
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIK 61 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai 61 (301)
++.|-|.|+|.+.. +++..+|.++ |+|.+.++. ......+|+|.++.+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~f---GeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASF---GEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhc---CCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 36799999997766 4555688888 999998877 24589999999999999985
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.87 E-value=0.004 Score=51.07 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=42.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-C---CccccceeEEEe
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-V---RLSYGNSYLKAS 78 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~---~l~~~gr~LkV~ 78 (301)
--|.+.|++..++-++|++.|+++ |.|.=|.+.... .-|+|.|.++++|+.|++.+. . .+.+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~---g~V~yVD~~~G~---~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF---GEVAYVDFSRGD---TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc---CCcceEEecCCC---CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357899999999999999999999 888766665433 689999999999999999875 2 344555544443
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.001 Score=67.92 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=70.6
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
.|+|||||...+++.+++.++.+ |...+.+++.|.. |+||||-+|.++.....|++.+| +..++++.|.|..|
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~f---g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-Gm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSF---GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-GMQLGDKKLVVQRA 366 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhc---ccchhheeecccccccccceeeeeeeCCcchhhhhcccc-hhhhcCceeEeehh
Confidence 68999999999999999999999 9999999998876 99999999999999999999997 46889999999887
Q ss_pred CCCC
Q 022209 81 QRRT 84 (301)
Q Consensus 81 ~~di 84 (301)
-.+-
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6653
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.0009 Score=61.70 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=57.2
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
.+.|-|++..+.++||++.|+.+ |.+....+ .+++|||+|++.++|..|+++++ +..+.|+.|.+.
T Consensus 101 r~~~~~~~~r~~~qdl~d~~~~~---g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~-~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 101 RLIVRNLSLRVSWQDLKDHFRPA---GEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLD-GKKLNGRRISVE 166 (216)
T ss_pred eeeeccchhhhhHHHHhhhhccc---CCCchhhh-----hccccceeehhhhhhhhcchhcc-chhhcCceeeec
Confidence 47899999999999999999999 88833322 67999999999999999999997 468899999983
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.64 E-value=0.002 Score=63.01 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=65.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEE--------EEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCcccc
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVS--------DVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYG 71 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--------~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~ 71 (301)
.||||-++|-++++.+|.+||-+. |.|. .+.|-+|++ ++|=|.|+|+++.+|++||.-.+ +..|.
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qc---g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-gkdf~ 142 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQC---GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-GKDFC 142 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhc---ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-ccccc
Confidence 489999999999999999999986 6665 233445544 99999999999999999999886 46889
Q ss_pred ceeEEEecCCCCC
Q 022209 72 NSYLKASDAQRRT 84 (301)
Q Consensus 72 gr~LkV~~a~~di 84 (301)
|..|+|+.|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887654
No 100
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=96.58 E-value=0.0012 Score=43.66 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=20.4
Q ss_pred ccCCCCceeeeccCCCcccccChh
Q 022209 269 KVNKDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 269 ~~~~~~~~C~fc~k~gH~k~~c~~ 292 (301)
+..-+.-.|+-|+++|||.+|||.
T Consensus 3 k~pP~~Y~C~~C~~~GH~i~dCP~ 26 (32)
T PF13696_consen 3 KKPPPGYVCHRCGQKGHWIQDCPT 26 (32)
T ss_pred CCCCCCCEeecCCCCCccHhHCCC
Confidence 344566799999999999999996
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.40 E-value=0.0073 Score=60.35 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=60.1
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
++|+.++|+|.+++++||++.|.+. |-+......-.+ .|-.|.+||++.|+|..|+-.+.+...=.+.-|+|+..+
T Consensus 414 satlHlsnip~svsee~lk~~f~~~---g~~vkafkff~k-d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEP---GGQVKAFKFFQK-DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcC---CceEEeeeecCC-CcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 3589999999999999999999998 444444333333 678999999999999999888865433345589998765
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
-.
T Consensus 490 s~ 491 (492)
T KOG1190|consen 490 ST 491 (492)
T ss_pred cc
Confidence 43
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.95 E-value=0.033 Score=45.58 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=49.6
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCC----------CCCCeEEEEeCCHHHHHHHHHHhCCCccccce
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK----------GSRAHAIVEFTTVKAAELIKCLASVRLSYGNS 73 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr----------~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr 73 (301)
-|-|.|+|.+ ....+.++|+++ |+|.+..-.... .....-.|+|+++.+|++|+.. |+..++|.
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~---G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG~i~~g~ 81 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSF---GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NGTIFSGS 81 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCC---S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TTEEETTC
T ss_pred EEEEEccCHH-HHHHHHHHHHhc---ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CCeEEcCc
Confidence 4889999999 677899999999 999877522221 1458999999999999999888 55677776
Q ss_pred eEE-Eec
Q 022209 74 YLK-ASD 79 (301)
Q Consensus 74 ~Lk-V~~ 79 (301)
.+- |.+
T Consensus 82 ~mvGV~~ 88 (100)
T PF05172_consen 82 LMVGVKP 88 (100)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 554 444
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.84 E-value=0.012 Score=58.55 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=51.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcC--CCCceEEEEEeecCC-CCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 4 KISLYGFASHVSARAVKEFLEGH--TGEGTVSDVEVGQNK-GSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~--~g~G~V~~~~V~~dr-~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
-|++-|||+++++.|+.+||... ++-|++--+-|.... ..-|=|||.|+.++.|+.|+..- +..+|-||+.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~kh--rq~iGqRYIEl 237 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKH--RQNIGQRYIEL 237 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHH--HHHHhHHHHHH
Confidence 37889999999999999999632 233444444444322 26699999999999999999863 23455555543
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.76 E-value=0.032 Score=51.70 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=48.5
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
..+++.|||..++.+.|.++|+++.|-..|. .+..+ .|.|||+|+++..|..|.+.+.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir---~i~~~--~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIR---LIPPR--SGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeE---eccCC--CceeEEecchhhhhHHHhhhhcc
Confidence 4689999999999999999999997655554 33322 49999999999999999888863
No 105
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.71 E-value=0.046 Score=49.93 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=58.7
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCC-Cccccc--eeEEEecC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASV-RLSYGN--SYLKASDA 80 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~-~l~~~g--r~LkV~~a 80 (301)
.|-|.|||.+.+++|||++..+. |.|.=+.|..| |.|.|+|...|+.+-|+..+.+ ...-.| -+++|...
T Consensus 117 RVvVsGLp~SgSWQDLKDHmRea---GdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREA---GDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhh---CCeeeeeeecc----cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 57899999999999999999997 99998888755 7999999999999999998762 222122 36677665
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
..+
T Consensus 190 ~~~ 192 (241)
T KOG0105|consen 190 ENR 192 (241)
T ss_pred CCC
Confidence 444
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.024 Score=57.85 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=54.2
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--------CCC---eEEEEeCCHHHHHHHHHHhCCCccc
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--------SRA---HAIVEFTTVKAAELIKCLASVRLSY 70 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--------SRG---FaFVqF~s~eaA~~Ai~~~~~~l~~ 70 (301)
+.+|+||||||.+++++|.+.|-.+ |+|. |--++. ++| |+|.-|+++.+.+.-+++-. ..-
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~F---Gs~~---VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~--~~~ 330 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQF---GSVK---VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS--EGE 330 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccc---cceE---eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh--hcc
Confidence 5689999999999999999999998 7764 211111 667 99999999999998888753 233
Q ss_pred cceeEEEec
Q 022209 71 GNSYLKASD 79 (301)
Q Consensus 71 ~gr~LkV~~ 79 (301)
++.+|+|+.
T Consensus 331 ~~~yf~vss 339 (520)
T KOG0129|consen 331 GNYYFKVSS 339 (520)
T ss_pred cceEEEEec
Confidence 666777764
No 107
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.64 E-value=0.03 Score=54.92 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 18 AVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 18 dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
||++=-+.+ |.|.++ |+.|+.+.|-+.|.|.+.++|+.+|..|++ -+|+||.|.++.-..
T Consensus 292 dl~eec~K~---G~v~~v-vv~d~hPdGvvtV~f~n~eeA~~ciq~m~G-R~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKF---GQVRKV-VVYDRHPDGVVTVSFRNNEEADQCIQTMDG-RWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHh---CCcceE-EEeccCCCceeEEEeCChHHHHHHHHHhcC-eeecceEEEEEEeCC
Confidence 334444555 999998 455666899999999999999999999975 599999999885443
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.44 E-value=0.017 Score=57.57 Aligned_cols=75 Identities=12% Similarity=0.208 Sum_probs=58.5
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEE--EEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVS--DVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~--~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|++-|||++++-+|+.+||..++ =.|. -+.++.... +-|=|||||.++|+|.+|...-.+. ...+|++.|-+.
T Consensus 283 vRLRGLPy~AtvEdIL~FlgdFa--~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~-~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 283 VRLRGLPYEATVEDILDFLGDFA--TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK-LMKSRYIEVFPC 359 (508)
T ss_pred eEecCCChhhhHHHHHHHHHHHh--hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh-hcccceEEEeec
Confidence 78999999999999999999885 2232 366666555 5599999999999999998886532 345899998665
Q ss_pred CC
Q 022209 81 QR 82 (301)
Q Consensus 81 ~~ 82 (301)
..
T Consensus 360 S~ 361 (508)
T KOG1365|consen 360 SV 361 (508)
T ss_pred cH
Confidence 44
No 109
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=95.44 E-value=0.015 Score=54.35 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=45.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
.|+||.||...+|+++|+.+|..|.| -..++|.. +..-.-|||+|++.|.|..|+.-+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~g---f~~l~~~~-~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPG---FHILKIRA-RGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCC---ceEEEEec-CCCcceEeecHHHHHHHHHHHHHhh
Confidence 37999999999999999999999953 34444442 2244788999988888888877664
No 110
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.94 E-value=0.032 Score=55.60 Aligned_cols=77 Identities=9% Similarity=0.155 Sum_probs=67.4
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
-|.|.||+.++|-+.+..+|... |.|..++|...-+ ..--+||-|.+...+..|-.+.| ..|=++.|-|
T Consensus 9 vIqvanispsat~dqm~tlFg~l---GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn--tvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNL---GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN--TVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhc---cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc--ceeeeeeEEE
Confidence 59999999999999999999998 9999999987433 56789999999999999988876 6788899999
Q ss_pred ecCCCCCC
Q 022209 78 SDAQRRTP 85 (301)
Q Consensus 78 ~~a~~di~ 85 (301)
.++.+..+
T Consensus 84 ~p~~~~~~ 91 (479)
T KOG4676|consen 84 RPYGDEVI 91 (479)
T ss_pred EecCCCCC
Confidence 98776655
No 111
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.85 E-value=0.016 Score=54.59 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHHHHHHh-cCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 17 RAVKEFLE-GHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 17 ~dLk~~Fe-~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
+||-..|+ +| |+|..+.|-.... -+|-+.|+|..+|+|++|++.+|+ -+|+|++|.+...+.
T Consensus 83 Ed~f~E~~~ky---gEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn-Rw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKY---GEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN-RWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHh---hhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC-ccccCCcceeeecCc
Confidence 44555555 67 9999886665554 889999999999999999999986 599999998765443
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.65 E-value=0.082 Score=52.07 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=58.6
Q ss_pred EEEeCCCccccHHHH------HHHHhcCCCCceEEEEEeecCCC-----CCCeE--EEEeCCHHHHHHHHHHhCCCcccc
Q 022209 5 ISLYGFASHVSARAV------KEFLEGHTGEGTVSDVEVGQNKG-----SRAHA--IVEFTTVKAAELIKCLASVRLSYG 71 (301)
Q Consensus 5 I~Vgnlp~~vta~dL------k~~Fe~~~g~G~V~~~~V~~dr~-----SRGFa--FVqF~s~eaA~~Ai~~~~~~l~~~ 71 (301)
+||-|||..+..+++ .+||.+| |.|..+-|- .++ --+|+ +++|.+.|+|..+|+..++ ..++
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQy---GkI~KIvvN-kkt~s~nst~~h~gvYITy~~kedAarcIa~vDg-s~~D 191 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQY---GKIKKIVVN-KKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG-SLLD 191 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhc---cceeEEEec-ccccccccccccceEEEEecchHHHHHHHHHhcc-cccc
Confidence 899999999999883 4799999 999876443 222 22677 9999999999999999974 6899
Q ss_pred ceeEEEecCCC
Q 022209 72 NSYLKASDAQR 82 (301)
Q Consensus 72 gr~LkV~~a~~ 82 (301)
||.|++.-.-.
T Consensus 192 Gr~lkatYGTT 202 (480)
T COG5175 192 GRVLKATYGTT 202 (480)
T ss_pred CceEeeecCch
Confidence 99999975443
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.59 E-value=0.085 Score=55.99 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=55.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEe
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKAS 78 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~ 78 (301)
-|.+-|+|++|+-+|+.+||..|- =.=-++.+....+ .-|=+.|.|++.++|.+|...+++ ..+.+|.+++.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~--~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~-~~i~nr~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYE--PDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDG-QKIRNRVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccc--cCCCceeEeecCCCCcccceeEeecCHHHHHhhhhcccc-CcccceeEEEE
Confidence 478999999999999999999992 1112455554433 779999999999999999888763 45666666554
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.05 E-value=0.043 Score=54.19 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=57.7
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
+|||||-|-+|++||.+.+.+. |--.+.+++....|. |+|||.|-..++++..+.++++- ...++|..=.|-+
T Consensus 83 ~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP-~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 83 CYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP-TKTIHGQSPTVLS 158 (498)
T ss_pred EEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc-cceecCCCCeeec
Confidence 7999999999999999999885 333455556666665 99999999999999999999885 3466776655543
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.38 E-value=0.089 Score=53.01 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=55.3
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCC---C-------------CCCeEEEEeCCHHHHHHHHHHhC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNK---G-------------SRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr---~-------------SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
++||-+-|||-+-.-+.|.++|..+ |.|.+++|-..- . -+-+|+|+|++.++|.+|.++++
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~---G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTV---GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcc---cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5799999999999999999999998 999999999872 1 25789999999999999999997
No 116
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=93.06 E-value=0.064 Score=50.83 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=58.6
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCC--------C-------CeEEEEeCCHHHHHHHHHHhCCCcc
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGS--------R-------AHAIVEFTTVKAAELIKCLASVRLS 69 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~S--------R-------GFaFVqF~s~eaA~~Ai~~~~~~l~ 69 (301)
||++|||....-.-|+++|+.| |.|-++.+.....+ + -=|-|+|.+...|..+.+++|| -.
T Consensus 77 vylS~IPp~m~~~rlReil~~y---GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn-~~ 152 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQY---GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN-TP 152 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhc---cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 9999999999999999999999 99999988865541 1 2267999999999999999985 36
Q ss_pred ccceeEEEecCCCCCC
Q 022209 70 YGNSYLKASDAQRRTP 85 (301)
Q Consensus 70 ~~gr~LkV~~a~~di~ 85 (301)
+||+. -++-..||-
T Consensus 153 Iggkk--~S~~~~dlW 166 (278)
T KOG3152|consen 153 IGGKK--KSPFRDDLW 166 (278)
T ss_pred cCCCC--CCchHHhhh
Confidence 66663 233444544
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=92.99 E-value=0.13 Score=54.71 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=53.5
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCC-CCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHT-GEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~-g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
|+--|++-||||++.+.|++.||+... =.|- |.|+-. --|=|||-|.|.|+|..|+-.. ++-+.|...+.
T Consensus 1 MsVIIRLqnLP~tAga~DIR~FFSGL~IPdGg---VHIIGG--e~GeaFI~FsTDeDARlaM~kd--r~~i~g~~VrL 71 (944)
T KOG4307|consen 1 MSVIIRLQNLPMTAGASDIRTFFSGLKIPDGG---VHIIGG--EEGEAFIGFSTDEDARLAMTKD--RLMIHGAEVRL 71 (944)
T ss_pred CceEEEecCCcccccchHHHHhhcccccCCCc---eEEecc--cccceEEEecccchhhhhhhhc--ccceecceEEE
Confidence 888899999999999999999998763 1232 344433 3499999999999999998874 35556655544
No 118
>smart00343 ZnF_C2HC zinc finger.
Probab=92.99 E-value=0.04 Score=33.93 Aligned_cols=18 Identities=39% Similarity=1.224 Sum_probs=16.1
Q ss_pred eeeeccCCCcccccChhh
Q 022209 276 NCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 276 ~C~fc~k~gH~k~~c~~~ 293 (301)
.|+.|.+.||+.++|++.
T Consensus 1 ~C~~CG~~GH~~~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIARDCPKX 18 (26)
T ss_pred CCccCCCCCcchhhCCcc
Confidence 599999999999999853
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=92.53 E-value=0.31 Score=50.20 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=49.2
Q ss_pred CCCceEEEEEeecC-CC-----CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCC
Q 022209 27 TGEGTVSDVEVGQN-KG-----SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTP 85 (301)
Q Consensus 27 ~g~G~V~~~~V~~d-r~-----SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~ 85 (301)
++.|.|..|+|..+ -+ .=|--||+|++.++++.|.+++. +.-|+||.+..+-.+.|-.
T Consensus 431 ~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~-GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 431 AKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELT-GRKFANRTVVASYYDEDKY 494 (500)
T ss_pred cccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHcc-CceeCCcEEEEEecCHHHh
Confidence 34599999999988 33 55889999999999999999997 4689999999887776654
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.40 E-value=0.47 Score=46.11 Aligned_cols=62 Identities=21% Similarity=0.138 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEeecCCC---CC-CeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 16 ARAVKEFLEGHTGEGTVSDVEVGQNKG---SR-AHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 16 a~dLk~~Fe~~~g~G~V~~~~V~~dr~---SR-GFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
++++++--|+| |+|..|-|..+-. .+ ---||||+..++|.+|+-.+|+ -.||||..++-..+
T Consensus 300 ede~keEceKy---g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG-RyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKY---GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG-RYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhh---cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC-ceecceeeeheecc
Confidence 46677777888 9999998876654 22 4479999999999999999875 58999998876543
No 121
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.52 E-value=0.99 Score=39.53 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCC
Q 022209 18 AVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTP 85 (301)
Q Consensus 18 dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~ 85 (301)
+|.+-|+++ |+|.=+|.+.+ -=.|+|.+.++|-+|+++- +..++|+.|+|+..-+|=+
T Consensus 52 ~ll~~~~~~---GevvLvRfv~~-----~mwVTF~dg~sALaals~d--g~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQY---GEVVLVRFVGD-----TMWVTFRDGQSALAALSLD--GIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCC---S-ECEEEEETT-----CEEEEESSCHHHHHHHHGC--CSEETTEEEEEEE------
T ss_pred HHHHHHHhC---CceEEEEEeCC-----eEEEEECccHHHHHHHccC--CcEECCEEEEEEeCCccHH
Confidence 677788888 99999988864 4789999999999998884 5889999999998777644
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=0.46 Score=49.59 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=59.4
Q ss_pred EEEeCCCccccHH------HHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEE
Q 022209 5 ISLYGFASHVSAR------AVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLK 76 (301)
Q Consensus 5 I~Vgnlp~~vta~------dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~Lk 76 (301)
|.|.|+|---.+. -|...|+++ |.|....+..+-. ++||.|+++++...|+.|+..+||...-..+.+.
T Consensus 61 Vvv~g~PvV~~~rl~klk~vl~kvfsk~---gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 61 VVVDGAPVVGPARLEKLKKVLTKVFSKA---GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred EEECCCcccChhHHHHHHHHHHHHHHhh---ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 7788888654443 356789998 9999998887765 9999999999999999999999875556677788
Q ss_pred EecCC
Q 022209 77 ASDAQ 81 (301)
Q Consensus 77 V~~a~ 81 (301)
|+...
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 87543
No 123
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.95 E-value=1.4 Score=33.25 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=46.0
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHh
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLA 64 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~ 64 (301)
.|+|.|++. .+.+|++.||..|.......+++=+.|. -+=|-|.+++.|.+|+.++
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHHHcC
Confidence 688999865 8889999999999544567788888775 3679999999999998763
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.60 E-value=1.8 Score=43.42 Aligned_cols=121 Identities=16% Similarity=0.101 Sum_probs=83.7
Q ss_pred eEEEeCCCcccc-HHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 4 KISLYGFASHVS-ARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 4 tI~Vgnlp~~vt-a~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
-+-|+||..... -+-|-.+|=.| |.|.+++.+..+. |=|.|||.++.+.++|+.-+||... -|..|.|-.++.
T Consensus 289 VmMVyGLdh~k~N~drlFNl~ClY---GNV~rvkFmkTk~--gtamVemgd~~aver~v~hLnn~~l-fG~kl~v~~SkQ 362 (494)
T KOG1456|consen 289 VMMVYGLDHGKMNCDRLFNLFCLY---GNVERVKFMKTKP--GTAMVEMGDAYAVERAVTHLNNIPL-FGGKLNVCVSKQ 362 (494)
T ss_pred EEEEEeccccccchhhhhhhhhhc---CceeeEEEeeccc--ceeEEEcCcHHHHHHHHHHhccCcc-ccceEEEeeccc
Confidence 356888887654 47889999999 9999999887663 8999999999999999999986444 555677777777
Q ss_pred CCCCCCCCCCCCCccCCCceEEecccccCC--eeEEEeeccceeeEEecCceeEEEE
Q 022209 83 RTPHYAKRGIPHYQLGDDLKLNFGCHISKD--KFSVLWSQENVSVKLCSDIRKFEFF 137 (301)
Q Consensus 83 di~~~pRp~~~~~r~~~~~~l~~G~~vs~~--~f~v~w~~~~V~~~~~~~~rkl~F~ 137 (301)
..+ -|. -+|-+ +|.+..|-..-+.. .|+--.-.+ .=-+.|-.+-|+|+
T Consensus 363 ~~v---~~~-~pflL-pDgSpSfKdys~SkNnRFssp~qAs--KNrIq~Ps~vLHff 412 (494)
T KOG1456|consen 363 NFV---SPV-QPFLL-PDGSPSFKDYSGSKNNRFSSPEQAS--KNRIQPPSNVLHFF 412 (494)
T ss_pred ccc---ccC-Cceec-CCCCcchhhcccccccccCChhHhh--cccccCCcceeEEe
Confidence 766 233 47888 77777665433222 222211111 11245566677776
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=89.60 E-value=0.16 Score=54.81 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=60.2
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
.++|.|.|+..|.++|+..+... |+|.++++++.+. ++|-|+|.|.++..|+.+....+ .+.+.-..+.|+.
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~---gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d-~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKT---GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVD-VAGKRENNGEVQV 811 (881)
T ss_pred hhheeCCCCCCchHHHHhhcccc---CCccccchhhhhccccccceeccCCCcchhhhhcccch-hhhhhhcCccccc
Confidence 57899999999999999999998 9999999999987 99999999999999999888765 2333444444443
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.09 E-value=0.47 Score=45.11 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=61.4
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhC-C--CccccceeE
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLAS-V--RLSYGNSYL 75 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~-~--~l~~~gr~L 75 (301)
|-+-|||-|++..|+-+.|.+-|+.+ |.|.++=++.|.. +-|=++|.|+..-+|..|....+ + .+...+++-
T Consensus 30 ~~a~l~V~nl~~~~sndll~~~f~~f---g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 30 MHAELYVVNLMQGASNDLLEQAFRRF---GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred ccceEEEEecchhhhhHHHHHhhhhc---CccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 44679999999999999999999999 9999887877765 55889999999999999999875 2 223444444
Q ss_pred EEecC
Q 022209 76 KASDA 80 (301)
Q Consensus 76 kV~~a 80 (301)
-|.++
T Consensus 107 ~VeP~ 111 (275)
T KOG0115|consen 107 GVEPM 111 (275)
T ss_pred CCChh
Confidence 44443
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.39 E-value=0.053 Score=58.30 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=49.5
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
+++|.|++......||...|..+ |++..++|..... .||.|+|.|..++.|.+||..-.
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~---~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d 730 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPS---GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD 730 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCcc---chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh
Confidence 67899999999999999999998 5555555553322 99999999999999999998753
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=87.51 E-value=0.48 Score=45.38 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=53.6
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
.+.|+|++.+.+.+.+...++.++ |++..+....... ++|++-|+|++.+.+..|+..+.
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~---g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~ 151 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEA---GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESG 151 (285)
T ss_pred ccccccccccchhhccccccchhh---cCcccchhhhhccccccccceeeccccHHHHHHHHHhhh
Confidence 478999999999999999999998 8888888776554 99999999999999999999874
No 129
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=87.05 E-value=0.21 Score=35.43 Aligned_cols=21 Identities=43% Similarity=0.922 Sum_probs=18.3
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
+-..-|++|+..||..++|||
T Consensus 29 ~lp~~C~~C~~~gH~~~~C~k 49 (49)
T PF14392_consen 29 RLPRFCFHCGRIGHSDKECPK 49 (49)
T ss_pred CcChhhcCCCCcCcCHhHcCC
Confidence 445679999999999999986
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.16 E-value=0.85 Score=46.30 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=56.2
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEec
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASD 79 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~ 79 (301)
..+|+|||...++.+||...|... ++..... --|||||.-.+..-|.+||+.+++...+.|..+.|.-
T Consensus 2 nklyignL~p~~~psdl~svfg~a---------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA---------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc---------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 468999999999999999999765 2333333 3499999999999999999999877888998887743
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=83.59 E-value=0.29 Score=53.22 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=53.7
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC--CCCeEEEEeCCHHHHHHHHHHhC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG--SRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~--SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
..|+++||++..+++.+++.-|+.+ |.|.+|.|.+.+- -=.||||-|.+-.++-.|...+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~---gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDES---GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhh---ccccccccccCCCCcccchhhhhhhccccCcccchhhc
Confidence 3689999999999999999999999 9999999998864 33899999999988888877664
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.43 E-value=0.95 Score=47.86 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=61.8
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
|.-|++|||+.+.+..+=++..++.. |-|.++.... |||.+|.....+..|+.++. .+..+|..|.++.-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~---g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t-~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKS---GFVPSWKRDK------FGFCEFLKHIGDLRASRLLT-ELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhC---Ccchhhhhhh------hcccchhhHHHHHHHHHHhc-ccCCCcchhhccch
Confidence 45689999999999999999999986 9999987773 99999999999999999986 35678888888764
Q ss_pred CCC
Q 022209 81 QRR 83 (301)
Q Consensus 81 ~~d 83 (301)
...
T Consensus 109 ~q~ 111 (668)
T KOG2253|consen 109 EQT 111 (668)
T ss_pred hhh
Confidence 333
No 133
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=81.27 E-value=0.66 Score=42.24 Aligned_cols=20 Identities=35% Similarity=1.107 Sum_probs=18.0
Q ss_pred CCCceeeeccCCCcccccCh
Q 022209 272 KDAVNCFFCKNKGHMKKACP 291 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~ 291 (301)
.+...||.|++.||.++|||
T Consensus 58 ~~~~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 58 EENPVCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccccccchhcccCcccccCC
Confidence 45668999999999999999
No 134
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=81.07 E-value=0.82 Score=39.00 Aligned_cols=21 Identities=29% Similarity=0.947 Sum_probs=16.6
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
.....||.|+..||+-++||+
T Consensus 127 ~~~~~C~~Cg~~gH~~~dCp~ 147 (148)
T PTZ00368 127 GGDKTCYNCGQTGHLSRDCPD 147 (148)
T ss_pred CCCCccccCCCcCcccccCCC
Confidence 445688888888888888886
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.67 E-value=6.9 Score=29.64 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=38.8
Q ss_pred ccccHHHHHHHHhcCCC--CceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecC
Q 022209 12 SHVSARAVKEFLEGHTG--EGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDA 80 (301)
Q Consensus 12 ~~vta~dLk~~Fe~~~g--~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a 80 (301)
..++..+|..++.+.+| ...|-+++|. .-|+||+-.. +.|+.+++.++ +..+.|+.++|++|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~-~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALN-GKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHT-T--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhc-CCCCCCeeEEEEEC
Confidence 45788999999998865 4456677775 4789999966 48889999987 45889999999875
No 136
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.16 E-value=0.9 Score=44.33 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=18.5
Q ss_pred CCCceeeeccCCCcccccChh
Q 022209 272 KDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 272 ~~~~~C~fc~k~gH~k~~c~~ 292 (301)
-+.--||-|..+|||.++||-
T Consensus 174 PpgY~CyRCGqkgHwIqnCpT 194 (427)
T COG5222 174 PPGYVCYRCGQKGHWIQNCPT 194 (427)
T ss_pred CCceeEEecCCCCchhhcCCC
Confidence 456789999999999999984
No 137
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=77.46 E-value=1.2 Score=31.14 Aligned_cols=20 Identities=40% Similarity=0.870 Sum_probs=17.7
Q ss_pred CCceeeeccCCCcccccChh
Q 022209 273 DAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 273 ~~~~C~fc~k~gH~k~~c~~ 292 (301)
....|..|.+.|||--.|+.
T Consensus 3 ~~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 3 ARVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCCcCcccCCCCcchhhCCC
Confidence 45689999999999999994
No 138
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.43 E-value=9 Score=30.81 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=38.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCCCCCCCCCCCCccCCCceEEecccccCCeeEEE
Q 022209 47 AIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTPHYAKRGIPHYQLGDDLKLNFGCHISKDKFSVL 117 (301)
Q Consensus 47 aFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~~~pRp~~~~~r~~~~~~l~~G~~vs~~~f~v~ 117 (301)
|.|+|++++.|++.+..-.-.+.+++..+.|...+-. .. .-.++++-+.+|+....+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~----------~~---~~~k~qv~~~vs~rtVlvs 58 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVT----------LG---HLQKFQVFSGVSKRTVLVS 58 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEe----------cC---CceEEEEEEcccCCEEEEe
Confidence 6799999999999988754335667776666532211 11 2366677777777775554
No 139
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=74.40 E-value=2.9 Score=44.08 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=63.0
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCc--cccceeEEEec
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRL--SYGNSYLKASD 79 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l--~~~gr~LkV~~ 79 (301)
+.-|++.||=--.|...|++++..-+ |.|... .+|+ -+.|.||.+.+.++|.+.+.+++|-. .-+++.|.|-.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtg--g~Vee~--WmDk-IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTG--GNVEEF--WMDK-IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhcc--CchHHH--HHHH-hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 45689999999999999999999874 777766 6676 67899999999999999999998633 35777888876
Q ss_pred CCCC
Q 022209 80 AQRR 83 (301)
Q Consensus 80 a~~d 83 (301)
+..|
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 5554
No 140
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=73.46 E-value=8.5 Score=38.81 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=60.7
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecC-C
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDA-Q 81 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a-~ 81 (301)
-|.|-|+=..+++.||.+-++.+ |+|.-+..+..+ --|.|+|++-+.|+.++..+. +...++|+..-++-+ .
T Consensus 33 vvhvr~l~~~v~eadl~eal~~f---G~i~yvt~~P~~---r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 33 VVHVRGLHQGVVEADLVEALSNF---GPIAYVTCMPHK---RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred eEEEeccccccchhHHHHHHhcC---CceEEEEecccc---ceeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 47889999999999999999999 998877666443 468999999999999999775 556788887777766 4
Q ss_pred CCC
Q 022209 82 RRT 84 (301)
Q Consensus 82 ~di 84 (301)
.+|
T Consensus 107 q~i 109 (494)
T KOG1456|consen 107 QCI 109 (494)
T ss_pred hhh
Confidence 444
No 141
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=73.29 E-value=3.9 Score=38.68 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 47 AIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 47 aFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
|||+|++.++|+.|.+... ...++.+++.+|++
T Consensus 1 aFVtF~~~~~a~~~~q~~~---~~~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL---SKRPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHh---cCCCCCceEeeCCC
Confidence 7999999999999999864 22445567766544
No 142
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=72.49 E-value=1.8 Score=30.08 Aligned_cols=20 Identities=50% Similarity=1.016 Sum_probs=17.8
Q ss_pred ceeeeccCCCccc--ccChhhH
Q 022209 275 VNCFFCKNKGHMK--KACPKYK 294 (301)
Q Consensus 275 ~~C~fc~k~gH~k--~~c~~~~ 294 (301)
.+|--|..-||+. +.||-|.
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~ 23 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYC 23 (40)
T ss_pred ccccccccccccccCccCCCCC
Confidence 5899999999999 7799876
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=72.00 E-value=24 Score=29.27 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=51.8
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
.+-+...|+..+.++|..|.+.+. ..|..++|+.|.. .|=-+-+.|.+.++|..--...||
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~--~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFR--EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhccc--ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCC
Confidence 355778888899999998888885 8899999998877 888899999999999888888763
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=71.62 E-value=9 Score=42.21 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=73.9
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCC-CccccceeEEEecCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASV-RLSYGNSYLKASDAQ 81 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~-~l~~~gr~LkV~~a~ 81 (301)
..++|||++.-....-|..-|..+ |.|..+.+.. --.||.|+.++..+|+.|...|-+ -+.-..+.|+|..|.
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~f---Gpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRF---GPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhcc---Ccceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 468999999999999999999999 9998755543 338999999999999999998752 122244678888776
Q ss_pred CCCCC----C-CCCCCCCCccCCCceEEecccccC
Q 022209 82 RRTPH----Y-AKRGIPHYQLGDDLKLNFGCHISK 111 (301)
Q Consensus 82 ~di~~----~-pRp~~~~~r~~~~~~l~~G~~vs~ 111 (301)
+.-.+ + .+|+.++-.+ ..++..+|--++.
T Consensus 530 ~~~~~Pqq~~~~~p~~~~k~~-~~at~~~~~p~~~ 563 (975)
T KOG0112|consen 530 PPGATPQQNLLTSPPVPPKHY-IEATDTGTHPVSD 563 (975)
T ss_pred CCCCChhhhcccCCCCCCCCc-cccccccCCCCCc
Confidence 64221 1 4554445555 5667777665554
No 145
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=67.36 E-value=2.2 Score=28.97 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=11.6
Q ss_pred CceeeeccCCCcccccChh
Q 022209 274 AVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~ 292 (301)
..-|+-|+|..||-.+|..
T Consensus 2 ~~~CprC~kg~Hwa~~C~s 20 (36)
T PF14787_consen 2 PGLCPRCGKGFHWASECRS 20 (36)
T ss_dssp --C-TTTSSSCS-TTT---
T ss_pred CccCcccCCCcchhhhhhh
Confidence 3579999999999999974
No 146
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=64.69 E-value=2.8 Score=38.21 Aligned_cols=17 Identities=29% Similarity=1.028 Sum_probs=16.0
Q ss_pred ceeeeccCCCcccccCh
Q 022209 275 VNCFFCKNKGHMKKACP 291 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~ 291 (301)
.+|+.|+..||+.++|+
T Consensus 98 ~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 98 KKCYNCGETGHLSRDCN 114 (190)
T ss_pred cccccccccCccccccC
Confidence 79999999999999993
No 147
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=63.12 E-value=3 Score=44.41 Aligned_cols=21 Identities=48% Similarity=0.980 Sum_probs=18.4
Q ss_pred CceeeeccCCCcccc--cChhhH
Q 022209 274 AVNCFFCKNKGHMKK--ACPKYK 294 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~--~c~~~~ 294 (301)
..+|-.|.+.||||. .||+|-
T Consensus 937 tr~C~nCGQvGHmkTNK~CP~f~ 959 (968)
T COG5179 937 TRTCGNCGQVGHMKTNKACPKFS 959 (968)
T ss_pred ceecccccccccccccccCcccc
Confidence 579999999999995 599984
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=62.61 E-value=11 Score=39.42 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=46.6
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHHhCCCc--ccc
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCLASVRL--SYG 71 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~~~~~l--~~~ 71 (301)
+.+-|+|...|..-|.+..|+.. |+-.=+.+..|=. .-|||||.|.+++++..+-++.+|.. .|+
T Consensus 391 ~~iknipNK~T~~ml~~~d~~~~--gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~Fn 460 (549)
T KOG4660|consen 391 LMIKNIPNKYTSKMLLAADEKNK--GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFN 460 (549)
T ss_pred hHhhccCchhhHHhhhhhhcccc--CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhc
Confidence 34556666666666666655543 6666677777743 66999999999999999999998532 366
No 149
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=58.95 E-value=4.6 Score=41.54 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=47.6
Q ss_pred cHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCC
Q 022209 15 SARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQR 82 (301)
Q Consensus 15 ta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~ 82 (301)
|-.+|...|.+| |+|..|.|-... =+|.|+|.+..+|-.|-... +..+++|.|||.=.++
T Consensus 386 t~a~ln~hfA~f---G~i~n~qv~~~~---~~a~vTF~t~aeag~a~~s~--~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQF---GEIENIQVDYSS---LHAVVTFKTRAEAGEAYASH--GAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhc---CccccccccCch---hhheeeeeccccccchhccc--cceecCceeEEEEecC
Confidence 347899999999 999999887663 57999999999886655543 3689999999965444
No 150
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.69 E-value=5.8 Score=38.97 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=56.7
Q ss_pred EEEeCCCccccHHHHH---HHHhcCCCCceEEEEEeecCCC------CCCeEEEEeCCHHHHHHHHHHhCCCccccceeE
Q 022209 5 ISLYGFASHVSARAVK---EFLEGHTGEGTVSDVEVGQNKG------SRAHAIVEFTTVKAAELIKCLASVRLSYGNSYL 75 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk---~~Fe~~~g~G~V~~~~V~~dr~------SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~L 75 (301)
+||-|+|..+..+++. ++|.+| |.|..+.+..+.. .=-.+.|+|+.+|+|..+|+.-+ +..++|+.|
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqy---gki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-g~~~dg~~l 155 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQY---GKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-GFVDDGRAL 155 (327)
T ss_pred hhhhCCCccccchhhhhCccccccc---ccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-hHHhhhhhh
Confidence 5777888777665554 577777 8899888776552 11348999999999999999986 468899999
Q ss_pred EEecCCCC
Q 022209 76 KASDAQRR 83 (301)
Q Consensus 76 kV~~a~~d 83 (301)
++..+...
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 98875553
No 151
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=58.50 E-value=5.6 Score=33.85 Aligned_cols=20 Identities=30% Similarity=0.999 Sum_probs=16.1
Q ss_pred CceeeeccCCCcccccChhh
Q 022209 274 AVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 274 ~~~C~fc~k~gH~k~~c~~~ 293 (301)
...||.|.+.||+.++||+-
T Consensus 52 ~~~C~~Cg~~GH~~~~Cp~~ 71 (148)
T PTZ00368 52 ERSCYNCGKTGHLSRECPEA 71 (148)
T ss_pred CcccCCCCCcCcCcccCCCc
Confidence 45788888888888888863
No 152
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=7 Score=39.98 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=41.8
Q ss_pred ceeeeeeCCCcCccccccccccccccCCCCceeeeccCCCcccccChhhHhHHhh
Q 022209 245 DLVHMTHGKKKDKKRKRKRKASINKVNKDAVNCFFCKNKGHMKKACPKYKTWVVK 299 (301)
Q Consensus 245 ~lVPlv~~~~~~~~~kg~~~~~~~~~~~~~~~C~fc~k~gH~k~~c~~~~~~~~k 299 (301)
.--|..-+...+.+.-+.+....+..+-...+|+-|..+|||-++||--.-|.++
T Consensus 129 t~~~~~~~~~~~~~~~~iq~~~~~g~Pppsy~c~rc~~~g~wikacptv~~~~~~ 183 (448)
T KOG0314|consen 129 TPPPGYVCHRCNSPGHFIQHCSTNGSPPPSYKCVKCPTPGPWIKACPTVSGSYSL 183 (448)
T ss_pred CCcccceeeecccCccccccccccCCCCCCcceecCCCCCccceeccccCCcccc
Confidence 3334444456666667777777777788999999999999999999987776643
No 153
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=57.69 E-value=7 Score=42.87 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=61.7
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCC-CccccceeEEEecCCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASV-RLSYGNSYLKASDAQR 82 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~-~l~~~gr~LkV~~a~~ 82 (301)
+.++-|.+-..+..-|..++.+| |.|.+++...|- .+|.|+|.+-|.|..|.+++.| ....-|-+-+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~y---g~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDY---GSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhh---cchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45667778889999999999999 999888765443 6899999999999999999874 4566777888888776
Q ss_pred CCC
Q 022209 83 RTP 85 (301)
Q Consensus 83 di~ 85 (301)
-..
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 543
No 154
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=54.89 E-value=20 Score=37.91 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=59.5
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecCCCC
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDAQRR 83 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a~~d 83 (301)
|-+--||.++-.+++|.+|... .|=.|.+|+..... -=+|+|+++++|+.|-..+. ....|.|++|.++-....
T Consensus 178 vilREIpettp~e~Vk~lf~~e-ncPk~iscefa~N~----nWyITfesd~DAQqAykylreevk~fqgKpImARIKain 252 (684)
T KOG2591|consen 178 VILREIPETTPIEVVKALFKGE-NCPKVISCEFAHND----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKAIN 252 (684)
T ss_pred EEEeecCCCChHHHHHHHhccC-CCCCceeeeeeecC----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhhhh
Confidence 4567899999999999999874 35789999988553 24899999999999999886 345899999988754433
No 155
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=53.58 E-value=7.1 Score=36.39 Aligned_cols=17 Identities=35% Similarity=1.214 Sum_probs=13.4
Q ss_pred ceeeeccCCCcccccCh
Q 022209 275 VNCFFCKNKGHMKKACP 291 (301)
Q Consensus 275 ~~C~fc~k~gH~k~~c~ 291 (301)
..||-|.+.||+-.+||
T Consensus 144 ~~Cy~Cg~~GH~s~~C~ 160 (261)
T KOG4400|consen 144 AKCYSCGEQGHISDDCP 160 (261)
T ss_pred CccCCCCcCCcchhhCC
Confidence 56888888888888887
No 156
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=52.30 E-value=32 Score=30.59 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=42.1
Q ss_pred eEEEe----CCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 4 KISLY----GFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 4 tI~Vg----nlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
||-|- |+...-+-+.+-..++.+ |+|.++.+- .|--|.|.|.+-.+|=.|+++..
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~f---GpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVF---GPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhc---CCcceeeec----CCceEEEEehhhHHHHHHHHhhc
Confidence 55554 444444445556667777 999998776 77889999999999999999986
No 157
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=50.75 E-value=46 Score=30.05 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=42.2
Q ss_pred cHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC-CCccccceeEEEecCCC
Q 022209 15 SARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS-VRLSYGNSYLKASDAQR 82 (301)
Q Consensus 15 ta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~-~~l~~~gr~LkV~~a~~ 82 (301)
.-+.|+++|..+ +.+........ =+=..|.|.+.++|++|...++ .+..++|..|++-.+..
T Consensus 8 ~~~~l~~l~~~~---~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTY---DPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT----SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhc---CCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 447899999998 77776655532 2557899999999999999986 35689999999977643
No 158
>PF05310 Tenui_NS3: Tenuivirus movement protein; InterPro: IPR007974 This family of ssRNA negative-strand crop plant tenuivirus proteins appears to combine PV2 [], NS2 [], NS3, and PV3 proteins. Plant viruses encode specific proteins known as movement proteins (MPs) to control their spread through plasmodesmata (PD) in walls between cells as well as from leaf to leaf via vascular-dependent transport. During this movement process, the virally encoded MPs interact with viral genomes for transport from the viral replication sites to the PDs in the walls of infected cells along the cytoskeleton and/or endoplasmic reticulum (ER) network. The virus is then thought to move through the PDs in the form of MP-associated ribonucleoprotein complexes or as virions []. The NS3 protein appears to function as an RNA silencing suppressor [].; PDB: 3AJF_A.
Probab=47.77 E-value=6.3 Score=35.75 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=0.0
Q ss_pred ccCCCCceeeeccCCCcccccChhh
Q 022209 269 KVNKDAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 269 ~~~~~~~~C~fc~k~gH~k~~c~~~ 293 (301)
+.+....+||.|+|+.|+.++=-++
T Consensus 93 kp~~~~tKCWlCdk~~~~~t~~L~~ 117 (186)
T PF05310_consen 93 KPRVPKTKCWLCDKPSYQETDNLKF 117 (186)
T ss_dssp -------------------------
T ss_pred cCCCCccceEEecchhhhccCCcce
Confidence 4445888999999999999875554
No 159
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=46.84 E-value=12 Score=36.51 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=39.2
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHHHH
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAAEL 59 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA~~ 59 (301)
-|||+|||.++--.||+.-+.+. |.+ -+..+|. .+|-+|.+|.+..+|-.
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~---~~~---pm~iswkg~~~k~flh~~~~~~~~~ 382 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKR---ECT---PMSISWKGHFGKCFLHFGNRKGVPS 382 (396)
T ss_pred ceeeccCccccchHHHHHHHHhc---CCC---ceeEeeecCCcceeEecCCccCCCC
Confidence 49999999999999999999886 332 2333454 88999999999876543
No 160
>PF06880 DUF1262: Protein of unknown function (DUF1262); InterPro: IPR010683 This family represents a conserved region within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that some family members contain more than one copy of this region.
Probab=43.75 E-value=38 Score=28.17 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCceeeeeeCC----CcCc-cccc--cccccccccCCCCceeeec
Q 022209 243 NSDLVHMTHGK----KKDK-KRKR--KRKASINKVNKDAVNCFFC 280 (301)
Q Consensus 243 ~s~lVPlv~~~----~~~~-~~kg--~~~~~~~~~~~~~~~C~fc 280 (301)
.--++|+++-| .++. +++| |.+.+...++.+..+|-||
T Consensus 60 ~V~FIPVl~QPLSSnrYYvi~~~Gkh~G~a~~~skEeD~~tcCFC 104 (104)
T PF06880_consen 60 PVVFIPVLNQPLSSNRYYVIRRKGKHKGEASACSKEEDMTTCCFC 104 (104)
T ss_pred cEEEEEcCCCcCcCCcEEEEEecccccceeeccccccccceeecC
Confidence 44579999988 2221 3344 5566788899999999999
No 161
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=43.73 E-value=23 Score=31.51 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=38.2
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceE---EEEEeecCCC-----CCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTV---SDVEVGQNKG-----SRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V---~~~~V~~dr~-----SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
+|-|-+||++.|++++.+-+..+. |.- ....=..++. .=.-|.|.|.+.+++..-.+..++
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l--~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWL--PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS----SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhc--ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 688999999999999999666633 222 2222112222 113488999999998888887764
No 162
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=42.85 E-value=6.7 Score=37.12 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=8.6
Q ss_pred eeecccCcCCcc
Q 022209 188 VREVDFAPSSSI 199 (301)
Q Consensus 188 iRttDFTps~sI 199 (301)
||.||||||.-|
T Consensus 134 iRDT~FTPSHii 145 (251)
T PF04896_consen 134 IRDTDFTPSHII 145 (251)
T ss_dssp --SSSTSHHHHH
T ss_pred eecCCCChHHHH
Confidence 899999999654
No 163
>TIGR03078 CH4_NH3mon_ox_C methane monooxygenase/ammonia monooxygenase, subunit C. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit C of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.27 E-value=9.4 Score=35.47 Aligned_cols=14 Identities=57% Similarity=0.859 Sum_probs=11.3
Q ss_pred eeeecccCcCCccc
Q 022209 187 RVREVDFAPSSSIE 200 (301)
Q Consensus 187 WiRttDFTps~sIG 200 (301)
=||.||||||.-|-
T Consensus 121 ~iRDt~FTPsHi~~ 134 (229)
T TIGR03078 121 IVRDTDFTPSHIIE 134 (229)
T ss_pred eeecCCCChHHHHH
Confidence 48999999996543
No 164
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.95 E-value=38 Score=28.32 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=27.6
Q ss_pred eEEEeCCCcc---------ccHHHHHHHHhcCCCCceEEEEEeecCCC-CCCeEEEEeCCHHHH
Q 022209 4 KISLYGFASH---------VSARAVKEFLEGHTGEGTVSDVEVGQNKG-SRAHAIVEFTTVKAA 57 (301)
Q Consensus 4 tI~Vgnlp~~---------vta~dLk~~Fe~~~g~G~V~~~~V~~dr~-SRGFaFVqF~s~eaA 57 (301)
++-|-|+|.. .+.++|++.|..|. .+ .++...++. .+|++.|+|.+.-+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~---p~-kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFN---PL-KVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH------S-EEEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcC---Cc-eeEECcCCCCCcEEEEEEECCChHH
Confidence 3456677554 46789999999983 33 344445554 889999999987554
No 165
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.14 E-value=19 Score=28.93 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=20.9
Q ss_pred CceEEEeCCCccccHHHHHHHHh
Q 022209 2 AKKISLYGFASHVSARAVKEFLE 24 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe 24 (301)
.+||-|.|||....+++|+|.+|
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 36899999999999999999887
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=34.98 E-value=1.8e+02 Score=23.52 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhC
Q 022209 6 SLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLAS 65 (301)
Q Consensus 6 ~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~ 65 (301)
+|+ ||..-...||.++|..+ |.|.-- =+ .-.-|||...+.+.|..|+..++
T Consensus 13 hlt-FPkeWK~~DI~qlFspf---G~I~Vs-Wi----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 13 HLT-FPKEWKTSDIYQLFSPF---GQIYVS-WI----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEE---TT--HHHHHHHCCCC---CCEEEE-EE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEe-CchHhhhhhHHHHhccC---CcEEEE-EE----cCCcEEEEeecHHHHHHHHHHhc
Confidence 344 99999999999999999 877532 22 23569999999999999999875
No 167
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=34.12 E-value=23 Score=30.17 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=20.3
Q ss_pred ccccCCCCceeeeccCCCcccccChh
Q 022209 267 INKVNKDAVNCFFCKNKGHMKKACPK 292 (301)
Q Consensus 267 ~~~~~~~~~~C~fc~k~gH~k~~c~~ 292 (301)
..+.....+.|..|+ -.||-..||-
T Consensus 99 ~~~~~~~~v~CR~Ck-GdH~T~~CPy 123 (128)
T PF12353_consen 99 KKKKGKSKVKCRICK-GDHWTSKCPY 123 (128)
T ss_pred hcccCCceEEeCCCC-CCcccccCCc
Confidence 345566778999996 9999999994
No 168
>KOG3563 consensus Forkhead/HNF-3-related transcription factor [Transcription]
Probab=34.06 E-value=15 Score=36.77 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=58.0
Q ss_pred cccccceEEEEeCCCCCCcchhhhhhcccccCceeEEeCCCceecCCceeeeeeCCCcCcccccccc-ccccccCCCCce
Q 022209 198 SIEQSSDICLELPSRAHIPKALKDFFYYKESPVQFTLVPGSVFSCNSDLVHMTHGKKKDKKRKRKRK-ASINKVNKDAVN 276 (301)
Q Consensus 198 sIG~s~~~cle~~~~~~~~~~~~~~~yy~e~~~~~~l~~g~~f~~~s~lVPlv~~~~~~~~~kg~~~-~~~~~~~~~~~~ 276 (301)
+|-|+.+=-|.|.+-.+| |.+-||||+++...|-=.=.++-|.|-++|=+-+ +++|-|||-+= .-....|-.|+-
T Consensus 185 AIQ~~pskmLTLSEIYqw--IMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaR--SPDKPGKGSfWTLHpdsGNMFENG 260 (454)
T KOG3563|consen 185 AIQQAPSKMLTLSEIYQW--IMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVAR--SPDKPGKGSFWTLHPDSGNMFENG 260 (454)
T ss_pred HHHhCCccceeHHHHHHH--HHHhhhHhhhhHHHHHhhhhhhccccceeeeccC--CCCCCCCccceeecCCcCcccccc
Confidence 677888888888888764 7889999999887764433456667888876644 67888898765 355577788888
Q ss_pred eee
Q 022209 277 CFF 279 (301)
Q Consensus 277 C~f 279 (301)
||-
T Consensus 261 CYL 263 (454)
T KOG3563|consen 261 CYL 263 (454)
T ss_pred hhe
Confidence 864
No 169
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.84 E-value=17 Score=36.88 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCceEEEeCCCccccHH--------HHHHHHhcCCCCceEEEEEeecCCC---CCCeEEEEeCCHHHHHHHHHH
Q 022209 1 MAKKISLYGFASHVSAR--------AVKEFLEGHTGEGTVSDVEVGQNKG---SRAHAIVEFTTVKAAELIKCL 63 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~--------dLk~~Fe~~~g~G~V~~~~V~~dr~---SRGFaFVqF~s~eaA~~Ai~~ 63 (301)
|-+.+|+.+|+...+.+ ++..+|..+ |.|+...++...|+. ++|--||||...+.|+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h-~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPH-YHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCc-ccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 45667888888777666 999999995 458899998888873 999999999999999998764
No 170
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.83 E-value=85 Score=25.18 Aligned_cols=54 Identities=4% Similarity=-0.010 Sum_probs=36.1
Q ss_pred CCccccHHHHHHHHhcCC-----CCceEEEEEeecCCC--------CCC-eEEEEeCCHHHHHHHHHH
Q 022209 10 FASHVSARAVKEFLEGHT-----GEGTVSDVEVGQNKG--------SRA-HAIVEFTTVKAAELIKCL 63 (301)
Q Consensus 10 lp~~vta~dLk~~Fe~~~-----g~G~V~~~~V~~dr~--------SRG-FaFVqF~s~eaA~~Ai~~ 63 (301)
|..+.+++++++..+++. ..|+|..++-.-.+. .+| |-.++|+.+.++-+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 455666666665544431 138999988776665 557 588999887777666665
No 171
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=32.05 E-value=2.8e+02 Score=23.86 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCC---CCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCC
Q 022209 16 ARAVKEFLEGHT---GEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASV 66 (301)
Q Consensus 16 a~dLk~~Fe~~~---g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~ 66 (301)
|..+++.+++.. |.. |.++-+.. .-.||-||+++..+++..+|....+
T Consensus 18 E~~V~~~L~~~~~~~~~~-i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 18 ERNVALMLAMRAKKENLP-IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHHHHhCCCc-EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 444555544432 223 66554443 3679999999988999999987753
No 172
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.45 E-value=24 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.820 Sum_probs=19.1
Q ss_pred CCceeeeccCCCcccccChhh
Q 022209 273 DAVNCFFCKNKGHMKKACPKY 293 (301)
Q Consensus 273 ~~~~C~fc~k~gH~k~~c~~~ 293 (301)
....||.|.+.||.-++||.-
T Consensus 163 ~~~~c~~c~~~~h~~~~C~~~ 183 (261)
T KOG4400|consen 163 KGGTCFRCGKVGHGSRDCPSK 183 (261)
T ss_pred CCCccccCCCcceecccCCcc
Confidence 578999999999999999973
No 173
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.95 E-value=1e+02 Score=25.25 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=40.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEE
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKA 77 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV 77 (301)
.-|||||++..+ .+.|-+..++..+.|.+.-+- .+.+.-||+|-+..+..- .-.+++|-.|..
T Consensus 28 ~GVyVg~~S~rV-Rd~lW~~v~~~~~~G~avmv~--~~~~eqG~~~~t~G~~rr---------~~vD~DGl~Lv~ 90 (97)
T PRK11558 28 AGVYVGDVSRRI-REMIWQQVTQLAEEGNVVMAW--ATNTESGFEFQTFGENRR---------IPVDLDGLRLVS 90 (97)
T ss_pred CCcEEcCCCHHH-HHHHHHHHHHhCCCCcEEEEE--cCCCCCCcEEEecCCCCc---------cEEecCCCEEEE
Confidence 358999876665 566777777777778776654 444433999998866410 113567766654
No 174
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.47 E-value=2.4e+02 Score=30.25 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=63.3
Q ss_pred CceEEEeCCCcc-ccHHHHHHHHhcCCCC-ceEEEEEeecCCC------------C------------------------
Q 022209 2 AKKISLYGFASH-VSARAVKEFLEGHTGE-GTVSDVEVGQNKG------------S------------------------ 43 (301)
Q Consensus 2 ~~tI~Vgnlp~~-vta~dLk~~Fe~~~g~-G~V~~~~V~~dr~------------S------------------------ 43 (301)
+++|=|=|++|. +.+.||--.|.+++-. |.|.+|.|-.+.. +
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 457889999996 7889999999999854 5999999986642 2
Q ss_pred -----C---------CeEEEEeCCHHHHHHHHHHhCCCccccce--eEEEecCCCCCC
Q 022209 44 -----R---------AHAIVEFTTVKAAELIKCLASVRLSYGNS--YLKASDAQRRTP 85 (301)
Q Consensus 44 -----R---------GFaFVqF~s~eaA~~Ai~~~~~~l~~~gr--~LkV~~a~~di~ 85 (301)
| =||.|+|++.+.|..+-...+ |+.|... .|-.+.+++++.
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-G~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-GIEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-cceeccccceeeeeecCCCCc
Confidence 2 389999999999999888875 4666655 444566666554
No 175
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=1.2e+02 Score=31.08 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=41.8
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHH
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCL 63 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~ 63 (301)
|-|+|||...-.+||...|+.|-+.| ++++-+ -+.||+--|.+...|..|+-+
T Consensus 394 lEIydfp~efkteDll~~f~~yq~kg--fdIkWv----DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 394 LEIYDFPDEFKTEDLLKAFETYQNKG--FDIKWV----DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred eEeccCchhhccHHHHHHHHHhhcCC--ceeEEe----ecceeEEeecchHHHHHHhhc
Confidence 77999999999999999999996333 444444 347888899888888777766
No 176
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=25.94 E-value=80 Score=26.85 Aligned_cols=37 Identities=5% Similarity=0.235 Sum_probs=32.8
Q ss_pred ceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCC
Q 022209 3 KKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKG 42 (301)
Q Consensus 3 ~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~ 42 (301)
..++++|++..++..++.+.|... |.+....+.....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 262 (306)
T COG0724 226 DNLYVGNLPLKTAEEELADLFKSR---GDIVRASLPPSKD 262 (306)
T ss_pred ceeeccccccccchhHHHHhcccc---ccceeeeccCCCC
Confidence 468999999999999999999998 9998887777765
No 177
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.03 E-value=2e+02 Score=21.46 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=43.5
Q ss_pred CCceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCH-HHHHHHHHH
Q 022209 1 MAKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTV-KAAELIKCL 63 (301)
Q Consensus 1 M~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~-eaA~~Ai~~ 63 (301)
|..+++|-|+.=.--+..+++-++.. +-|.+++|-.+. |=+.|+|++. ...+..+++
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v---~gv~~v~v~l~~---~~~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEV---DGVASVDVDLEK---GTATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcC---CCeeEEEEEccc---CeEEEEEcCCcCCHHHHHHH
Confidence 55679999999999999999999998 448888887665 5599999983 333333333
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.81 E-value=2.3e+02 Score=28.04 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=47.4
Q ss_pred EEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCcccccee-EEEec
Q 022209 5 ISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSY-LKASD 79 (301)
Q Consensus 5 I~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~-LkV~~ 79 (301)
|-|.|||...+ .-|...|+.+ |+|... ++.+ .=.+-.|.+.+.-+|++||+..+ ..++|-. +-|.+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~c---G~Vvkh--v~~~-ngNwMhirYssr~~A~KALskng--~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRC---GEVVKH--VTPS-NGNWMHIRYSSRTHAQKALSKNG--TIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhh---Ceeeee--ecCC-CCceEEEEecchhHHHHhhhhcC--eeeccceEEeeee
Confidence 66889998765 5677889998 999864 3332 23688899999999999999853 4555543 34444
No 179
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=24.14 E-value=37 Score=34.89 Aligned_cols=24 Identities=29% Similarity=0.720 Sum_probs=20.7
Q ss_pred CCceeeeccCCCcccccChhhHhH
Q 022209 273 DAVNCFFCKNKGHMKKACPKYKTW 296 (301)
Q Consensus 273 ~~~~C~fc~k~gH~k~~c~~~~~~ 296 (301)
.+.-|-||.--||-..+|||+.+.
T Consensus 569 ~~kGCayCgGLGHRItdCPKle~~ 592 (610)
T KOG0341|consen 569 GEKGCAYCGGLGHRITDCPKLEAQ 592 (610)
T ss_pred CccccccccCCCcccccCchhhhh
Confidence 445799999999999999998654
No 180
>PF12499 DUF3707: Pherophorin ; InterPro: IPR024616 This domain is found in a family of proteins that are frequently annotated as pherophorin [, , ]. The domain often occurs twice and is typically between 147 and 160 amino acids in length.
Probab=23.98 E-value=2.6e+02 Score=22.88 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=21.0
Q ss_pred eeeec--ccCcCCcccccceEEEEeCCCCCCcchh
Q 022209 187 RVREV--DFAPSSSIEQSSDICLELPSRAHIPKAL 219 (301)
Q Consensus 187 WiRtt--DFTps~sIG~s~~~cle~~~~~~~~~~~ 219 (301)
|+|-| +++++.+-|. .+||+|.+...+++|-
T Consensus 96 ~lkit~L~~~~~~~~g~--~vCl~l~~c~tl~~lC 128 (144)
T PF12499_consen 96 VLKITNLNWSLSQANGA--EVCLTLKPCTTLSDLC 128 (144)
T ss_pred eEEEEeccCcCCcCCCc--EEEEEECCCCCHHHHh
Confidence 45544 5666666666 8999998666556655
No 181
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.29 E-value=87 Score=34.56 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=30.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCCCCCC
Q 022209 44 RAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQRRTP 85 (301)
Q Consensus 44 RGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~~di~ 85 (301)
-+.|||+|+|...|+-|.+..-....+++....+-+|+.|++
T Consensus 357 ~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~ 398 (827)
T COG5594 357 TKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDII 398 (827)
T ss_pred cccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccc
Confidence 368999999999999988875333455555555666666765
No 182
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=22.20 E-value=7.4 Score=39.81 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=59.5
Q ss_pred CceEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHhCCCccccceeEEEecCC
Q 022209 2 AKKISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLASVRLSYGNSYLKASDAQ 81 (301)
Q Consensus 2 ~~tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~~~~l~~~gr~LkV~~a~ 81 (301)
+++|.+-|+|...-++-|..++.+| |+|..|+++....--.--=|+..+.+.++.||..++ +-.+....|+|.-.+
T Consensus 80 srk~Qirnippql~wevld~Ll~qy---g~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~-g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQY---GTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLN-GPQLENQHLKVGYIP 155 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhcc---CCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhc-chHhhhhhhhcccCc
Confidence 3568899999999999999999999 999999987444311222356667888889999886 456777888887655
Q ss_pred CC
Q 022209 82 RR 83 (301)
Q Consensus 82 ~d 83 (301)
+.
T Consensus 156 de 157 (584)
T KOG2193|consen 156 DE 157 (584)
T ss_pred hh
Confidence 53
No 183
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=20.99 E-value=1.6e+02 Score=22.31 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCceEEEEEee
Q 022209 17 RAVKEFLEGHTGEGTVSDVEVG 38 (301)
Q Consensus 17 ~dLk~~Fe~~~g~G~V~~~~V~ 38 (301)
++|++||++. |+|.-+.|-
T Consensus 9 ~~iR~~fs~l---G~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQL---GEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhc---CcEEEEEEc
Confidence 6899999999 999887775
No 184
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.59 E-value=2.9e+02 Score=21.53 Aligned_cols=60 Identities=17% Similarity=0.067 Sum_probs=44.2
Q ss_pred eEEEeCCCccccHHHHHHHHhcCCCCceEEEEEeecCCCCCCeEEEEeCCHHHHHHHHHHh
Q 022209 4 KISLYGFASHVSARAVKEFLEGHTGEGTVSDVEVGQNKGSRAHAIVEFTTVKAAELIKCLA 64 (301)
Q Consensus 4 tI~Vgnlp~~vta~dLk~~Fe~~~g~G~V~~~~V~~dr~SRGFaFVqF~s~eaA~~Ai~~~ 64 (301)
.-|+-..+..++-.|++..+|..-|. .|.+++...-....==|+|++...+.|..+...+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V-kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV-KVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 46788889999999999999985322 5666666655444456999998887777766554
Done!